# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0288/ # command:# Making conformation for sequence T0288 numbered 1 through 93 Created new target T0288 from T0288.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0288/ # command:# reading script from file T0288.t04.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g9oA/T0288-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1g9oA/T0288-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g9oA read from 1g9oA/T0288-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g9oA in training set T0288 2 :MVPGKVTLQKDAQN 1g9oA 10 :MLPRLCCLEKGPNG # choosing archetypes in rotamer library T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=4 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_820697697.pdb -s /var/tmp/to_scwrl_820697697.seq -o /var/tmp/from_scwrl_820697697.pdb > /var/tmp/scwrl_820697697.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_820697697.pdb Number of alignments=1 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fe5A/T0288-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2fe5A expands to /projects/compbio/data/pdb/2fe5.pdb.gz 2fe5A:Skipped atom 9, because occupancy 0.3 <= existing 0.700 in 2fe5A Skipped atom 13, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 15, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 17, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 19, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 42, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 44, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 47, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 51, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 53, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 55, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 57, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 59, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 294, because occupancy 0.400 <= existing 0.600 in 2fe5A Skipped atom 296, because occupancy 0.400 <= existing 0.600 in 2fe5A Skipped atom 298, because occupancy 0.400 <= existing 0.600 in 2fe5A Skipped atom 300, because occupancy 0.400 <= existing 0.600 in 2fe5A Skipped atom 302, because occupancy 0.400 <= existing 0.600 in 2fe5A Skipped atom 317, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 320, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 431, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 433, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 435, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 437, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 439, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 441, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 443, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 593, because occupancy 0.250 <= existing 0.750 in 2fe5A Skipped atom 597, because occupancy 0.250 <= existing 0.750 in 2fe5A Skipped atom 599, because occupancy 0.250 <= existing 0.750 in 2fe5A Skipped atom 618, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 620, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 622, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 624, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 626, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 628, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 630, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 632, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 634, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 636, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 638, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 640, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 642, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 644, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 646, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 648, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 650, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 652, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 654, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 656, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 660, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 662, because occupancy 0.500 <= existing 0.500 in 2fe5A # T0288 read from 2fe5A/T0288-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fe5A read from 2fe5A/T0288-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2fe5A to template set # found chain 2fe5A in template set T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=7 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_655858699.pdb -s /var/tmp/to_scwrl_655858699.seq -o /var/tmp/from_scwrl_655858699.pdb > /var/tmp/scwrl_655858699.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_655858699.pdb Number of alignments=2 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tp5A/T0288-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1tp5A expands to /projects/compbio/data/pdb/1tp5.pdb.gz 1tp5A:# T0288 read from 1tp5A/T0288-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tp5A read from 1tp5A/T0288-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1tp5A to template set # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 1 :SMVPGKVTLQKDAQN 1tp5A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1tp5A 323 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKL 1tp5A 390 :AQYK Number of specific fragments extracted= 4 number of extra gaps= 1 total=11 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1583571042.pdb -s /var/tmp/to_scwrl_1583571042.seq -o /var/tmp/from_scwrl_1583571042.pdb > /var/tmp/scwrl_1583571042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1583571042.pdb Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fcfA/T0288-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2fcfA expands to /projects/compbio/data/pdb/2fcf.pdb.gz 2fcfA:Skipped atom 598, because occupancy 0.500 <= existing 0.500 in 2fcfA Skipped atom 602, because occupancy 0.500 <= existing 0.500 in 2fcfA Skipped atom 604, because occupancy 0.500 <= existing 0.500 in 2fcfA Skipped atom 606, because occupancy 0.500 <= existing 0.500 in 2fcfA # T0288 read from 2fcfA/T0288-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fcfA read from 2fcfA/T0288-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2fcfA to template set # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=14 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_559301039.pdb -s /var/tmp/to_scwrl_559301039.seq -o /var/tmp/from_scwrl_559301039.pdb > /var/tmp/scwrl_559301039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_559301039.pdb Number of alignments=4 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qavA/T0288-1qavA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1qavA expands to /projects/compbio/data/pdb/1qav.pdb.gz 1qavA:# T0288 read from 1qavA/T0288-1qavA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qavA read from 1qavA/T0288-1qavA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1qavA to template set # found chain 1qavA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=15 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1395132001.pdb -s /var/tmp/to_scwrl_1395132001.seq -o /var/tmp/from_scwrl_1395132001.pdb > /var/tmp/scwrl_1395132001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1395132001.pdb Number of alignments=5 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f0aA/T0288-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2f0aA expands to /projects/compbio/data/pdb/2f0a.pdb.gz 2f0aA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0288 read from 2f0aA/T0288-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f0aA read from 2f0aA/T0288-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2f0aA to template set # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQ 2f0aA 252 :IITVTLN T0288 16 :LIGISIGG 2f0aA 264 :FLGISIVG T0288 24 :GAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 274 :NERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=19 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1186090427.pdb -s /var/tmp/to_scwrl_1186090427.seq -o /var/tmp/from_scwrl_1186090427.pdb > /var/tmp/scwrl_1186090427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1186090427.pdb Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wf7A/T0288-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wf7A expands to /projects/compbio/data/pdb/1wf7.pdb.gz 1wf7A:# T0288 read from 1wf7A/T0288-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1wf7A read from 1wf7A/T0288-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1wf7A to template set # found chain 1wf7A in template set T0288 2 :MVPGKVTLQ 1wf7A 4 :GSSGSVSLV T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=22 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1974806402.pdb -s /var/tmp/to_scwrl_1974806402.seq -o /var/tmp/from_scwrl_1974806402.pdb > /var/tmp/scwrl_1974806402.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1974806402.pdb Number of alignments=7 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f5yA/T0288-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2f5yA expands to /projects/compbio/data/pdb/2f5y.pdb.gz 2f5yA:Skipped atom 397, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 401, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 403, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 405, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 407, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 409, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 411, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 413, because occupancy 0.500 <= existing 0.500 in 2f5yA # T0288 read from 2f5yA/T0288-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f5yA read from 2f5yA/T0288-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2f5yA to template set # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f5yA)V95 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGG 2f5yA 28 :FGFTICC T0288 28 :CPCLYIVQVFDNTPAALDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 5 number of extra gaps= 1 total=27 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1473144499.pdb -s /var/tmp/to_scwrl_1473144499.seq -o /var/tmp/from_scwrl_1473144499.pdb > /var/tmp/scwrl_1473144499.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1473144499.pdb Number of alignments=8 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i16/T0288-1i16-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1i16 expands to /projects/compbio/data/pdb/1i16.pdb.gz 1i16:Warning: there is no chain 1i16 will retry with 1i16A # T0288 read from 1i16/T0288-1i16-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1i16 read from 1i16/T0288-1i16-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1i16 to template set # found chain 1i16 in template set T0288 2 :MVPGKVTLQKDAQN 1i16 28 :ATVCTVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIHYNKLQYY 1i16 107 :DGPVTIVIRRKSLQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=31 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1739000680.pdb -s /var/tmp/to_scwrl_1739000680.seq -o /var/tmp/from_scwrl_1739000680.pdb > /var/tmp/scwrl_1739000680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1739000680.pdb Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fc6A/T0288-1fc6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1fc6A/T0288-1fc6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fc6A read from 1fc6A/T0288-1fc6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fc6A in training set T0288 15 :NLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 161 :TGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMI 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0288 77 :VKGEVTIHYNKLQY 1fc6A 223 :ADSQVEVVLHAPGA Number of specific fragments extracted= 3 number of extra gaps= 0 total=34 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1498617646.pdb -s /var/tmp/to_scwrl_1498617646.seq -o /var/tmp/from_scwrl_1498617646.pdb > /var/tmp/scwrl_1498617646.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1498617646.pdb Number of alignments=10 # command:# reading script from file T0288.t06.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g9oA/T0288-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1g9oA/T0288-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g9oA read from 1g9oA/T0288-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL T0288 85 :YNKL 1g9oA 93 :PETD Number of specific fragments extracted= 5 number of extra gaps= 0 total=39 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_669908538.pdb -s /var/tmp/to_scwrl_669908538.seq -o /var/tmp/from_scwrl_669908538.pdb > /var/tmp/scwrl_669908538.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_669908538.pdb Number of alignments=11 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fc6A/T0288-1fc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1fc6A/T0288-1fc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fc6A read from 1fc6A/T0288-1fc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fc6A in training set T0288 15 :NLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 161 :TGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMI 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0288 77 :VKGEVTIH 1fc6A 223 :ADSQVEVV T0288 85 :YNKLQY 1fc6A 237 :PSNTRT Number of specific fragments extracted= 4 number of extra gaps= 0 total=43 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1387036158.pdb -s /var/tmp/to_scwrl_1387036158.seq -o /var/tmp/from_scwrl_1387036158.pdb > /var/tmp/scwrl_1387036158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1387036158.pdb Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fcfA/T0288-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2fcfA/T0288-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fcfA read from 2fcfA/T0288-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYK 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTR Number of specific fragments extracted= 3 number of extra gaps= 1 total=46 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_12895151.pdb -s /var/tmp/to_scwrl_12895151.seq -o /var/tmp/from_scwrl_12895151.pdb > /var/tmp/scwrl_12895151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_12895151.pdb Number of alignments=13 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tp5A/T0288-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1tp5A/T0288-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tp5A read from 1tp5A/T0288-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 1 :SMVPGKVTLQKDAQN 1tp5A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQY 1tp5A 323 :LGFNIVGGEDG T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT Number of specific fragments extracted= 3 number of extra gaps= 1 total=49 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1144522534.pdb -s /var/tmp/to_scwrl_1144522534.seq -o /var/tmp/from_scwrl_1144522534.pdb > /var/tmp/scwrl_1144522534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1144522534.pdb Number of alignments=14 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fneA/T0288-2fneA-t06-global-adpstyle1.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2fneA expands to /projects/compbio/data/pdb/2fne.pdb.gz 2fneA:Skipped atom 15, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 19, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 21, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 23, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 25, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 27, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 662, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 664, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 666, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 668, because occupancy 0.500 <= existing 0.500 in 2fneA # T0288 read from 2fneA/T0288-2fneA-t06-global-adpstyle1.a2m # 2fneA read from 2fneA/T0288-2fneA-t06-global-adpstyle1.a2m # adding 2fneA to template set # found chain 2fneA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2fneA)M1954 Warning: unaligning (T0288)K92 because last residue in template chain is (2fneA)V2048 T0288 4 :P 2fneA 1955 :P T0288 5 :GKVTLQKDAQN 2fneA 1958 :KSITLERGPDG T0288 17 :IGISIGGGAQYCP 2fneA 1969 :LGFSIVGGYGSPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fneA 1985 :PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLM T0288 85 :YNKLQYY 2fneA 2041 :LSSDETS Number of specific fragments extracted= 5 number of extra gaps= 0 total=54 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1812282133.pdb -s /var/tmp/to_scwrl_1812282133.seq -o /var/tmp/from_scwrl_1812282133.pdb > /var/tmp/scwrl_1812282133.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1812282133.pdb Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fe5A/T0288-2fe5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2fe5A/T0288-2fe5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fe5A read from 2fe5A/T0288-2fe5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fe5A in template set T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK Number of specific fragments extracted= 3 number of extra gaps= 0 total=57 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1328104338.pdb -s /var/tmp/to_scwrl_1328104338.seq -o /var/tmp/from_scwrl_1328104338.pdb > /var/tmp/scwrl_1328104338.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1328104338.pdb Number of alignments=16 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zokA/T0288-1zokA-t06-global-adpstyle1.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zokA expands to /projects/compbio/data/pdb/1zok.pdb.gz 1zokA:# T0288 read from 1zokA/T0288-1zokA-t06-global-adpstyle1.a2m # 1zokA read from 1zokA/T0288-1zokA-t06-global-adpstyle1.a2m # adding 1zokA to template set # found chain 1zokA in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1zokA)F313 T0288 1 :SMV 1zokA 221 :EYE T0288 6 :KVTLQKDAQN 1zokA 224 :EITLERGNSG T0288 17 :IGISIGGGAQYCP 1zokA 234 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1zokA 252 :SIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 4 number of extra gaps= 0 total=61 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1380171691.pdb -s /var/tmp/to_scwrl_1380171691.seq -o /var/tmp/from_scwrl_1380171691.pdb > /var/tmp/scwrl_1380171691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1380171691.pdb Number of alignments=17 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bygA/T0288-2bygA-t06-global-adpstyle1.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bygA expands to /projects/compbio/data/pdb/2byg.pdb.gz 2bygA:# T0288 read from 2bygA/T0288-2bygA-t06-global-adpstyle1.a2m # 2bygA read from 2bygA/T0288-2bygA-t06-global-adpstyle1.a2m # adding 2bygA to template set # found chain 2bygA in template set Warning: unaligning (T0288)K92 because last residue in template chain is (2bygA)Y283 T0288 1 :SMVPGKVTLQKDAQN 2bygA 188 :SMTVVEIKLFKGPKG T0288 17 :IGISIGGGAQYCP 2bygA 203 :LGFSIAGGVGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 2bygA 221 :SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=64 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1113502214.pdb -s /var/tmp/to_scwrl_1113502214.seq -o /var/tmp/from_scwrl_1113502214.pdb > /var/tmp/scwrl_1113502214.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1113502214.pdb Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wfvA/T0288-1wfvA-t06-global-adpstyle1.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wfvA expands to /projects/compbio/data/pdb/1wfv.pdb.gz 1wfvA:# T0288 read from 1wfvA/T0288-1wfvA-t06-global-adpstyle1.a2m # 1wfvA read from 1wfvA/T0288-1wfvA-t06-global-adpstyle1.a2m # adding 1wfvA to template set # found chain 1wfvA in template set Warning: unaligning (T0288)L88 because last residue in template chain is (1wfvA)G103 T0288 1 :SMVPGKVTLQKDAQN 1wfvA 9 :DFDYFTVDMEKGAKG T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1wfvA 24 :FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLL T0288 85 :YNK 1wfvA 100 :PSS Number of specific fragments extracted= 3 number of extra gaps= 0 total=67 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_860516127.pdb -s /var/tmp/to_scwrl_860516127.seq -o /var/tmp/from_scwrl_860516127.pdb > /var/tmp/scwrl_860516127.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_860516127.pdb Number of alignments=19 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vj6A/T0288-1vj6A-t06-global-adpstyle1.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vj6A expands to /projects/compbio/data/pdb/1vj6.pdb.gz 1vj6A:# T0288 read from 1vj6A/T0288-1vj6A-t06-global-adpstyle1.a2m # 1vj6A read from 1vj6A/T0288-1vj6A-t06-global-adpstyle1.a2m # adding 1vj6A to template set # found chain 1vj6A in template set Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0288)D45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 Warning: unaligning (T0288)Y91 because last residue in template chain is (1vj6A)P102 T0288 1 :SMVPGKVTLQKDAQN 1vj6A 10 :PGDTFEVELAKTDGS T0288 17 :IGISIGGGAQYCP 1vj6A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFD 1vj6A 41 :GIYVKAIIP T0288 41 :PAA 1vj6A 52 :AAE T0288 46 :GT 1vj6A 57 :GR T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 6 number of extra gaps= 3 total=73 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_777720504.pdb -s /var/tmp/to_scwrl_777720504.seq -o /var/tmp/from_scwrl_777720504.pdb > /var/tmp/scwrl_777720504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_777720504.pdb Number of alignments=20 # command:# reading script from file T0288.t2k.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fe5A/T0288-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2fe5A/T0288-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fe5A read from 2fe5A/T0288-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fe5A in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=75 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1543755628.pdb -s /var/tmp/to_scwrl_1543755628.seq -o /var/tmp/from_scwrl_1543755628.pdb > /var/tmp/scwrl_1543755628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1543755628.pdb Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g9oA/T0288-1g9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1g9oA/T0288-1g9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g9oA read from 1g9oA/T0288-1g9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g9oA in training set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=78 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1722060048.pdb -s /var/tmp/to_scwrl_1722060048.seq -o /var/tmp/from_scwrl_1722060048.pdb > /var/tmp/scwrl_1722060048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1722060048.pdb Number of alignments=22 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tp5A/T0288-1tp5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1tp5A/T0288-1tp5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tp5A read from 1tp5A/T0288-1tp5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNK 1tp5A 390 :AQY Number of specific fragments extracted= 3 number of extra gaps= 1 total=81 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1455590963.pdb -s /var/tmp/to_scwrl_1455590963.seq -o /var/tmp/from_scwrl_1455590963.pdb > /var/tmp/scwrl_1455590963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1455590963.pdb Number of alignments=23 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fcfA/T0288-2fcfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2fcfA/T0288-2fcfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fcfA read from 2fcfA/T0288-2fcfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 4 :PGKVTLQKD 2fcfA 1149 :PRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=84 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_328298285.pdb -s /var/tmp/to_scwrl_328298285.seq -o /var/tmp/from_scwrl_328298285.pdb > /var/tmp/scwrl_328298285.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_328298285.pdb Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n99A/T0288-1n99A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1n99A expands to /projects/compbio/data/pdb/1n99.pdb.gz 1n99A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0288 read from 1n99A/T0288-1n99A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1n99A read from 1n99A/T0288-1n99A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1n99A to template set # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE T0288 81 :VTI 1n99A 186 :ITM T0288 86 :NKLQYYK 1n99A 191 :RDRPFER Number of specific fragments extracted= 5 number of extra gaps= 1 total=89 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_70636429.pdb -s /var/tmp/to_scwrl_70636429.seq -o /var/tmp/from_scwrl_70636429.pdb > /var/tmp/scwrl_70636429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_70636429.pdb Number of alignments=25 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f0aA/T0288-2f0aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2f0aA/T0288-2f0aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f0aA read from 2f0aA/T0288-2f0aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f0aA in template set Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 3 number of extra gaps= 1 total=92 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_136495343.pdb -s /var/tmp/to_scwrl_136495343.seq -o /var/tmp/from_scwrl_136495343.pdb > /var/tmp/scwrl_136495343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_136495343.pdb Number of alignments=26 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i16/T0288-1i16-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1i16/T0288-1i16-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1i16 read from 1i16/T0288-1i16-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1i16 in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1i16 28 :ATVCTVTLEKMSAGLGFSLEGGKG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0288 81 :VTIHY 1i16 110 :VTIVI T0288 87 :KLQYYK 1i16 115 :RRKSLQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=96 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1472576334.pdb -s /var/tmp/to_scwrl_1472576334.seq -o /var/tmp/from_scwrl_1472576334.pdb > /var/tmp/scwrl_1472576334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1472576334.pdb Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wf7A/T0288-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1wf7A/T0288-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1wf7A read from 1wf7A/T0288-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1wf7A in template set T0288 7 :VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 7 :GSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA Number of specific fragments extracted= 2 number of extra gaps= 0 total=98 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_402903177.pdb -s /var/tmp/to_scwrl_402903177.seq -o /var/tmp/from_scwrl_402903177.pdb > /var/tmp/scwrl_402903177.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_402903177.pdb Number of alignments=28 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f5yA/T0288-2f5yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2f5yA/T0288-2f5yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f5yA read from 2f5yA/T0288-2f5yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f5yA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)P4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 5 :GKVTLQKDAQNLIGISIGGG 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0288 29 :PCLYIVQVFDNTPAALDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=102 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1329202899.pdb -s /var/tmp/to_scwrl_1329202899.seq -o /var/tmp/from_scwrl_1329202899.pdb > /var/tmp/scwrl_1329202899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1329202899.pdb Number of alignments=29 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fc6A/T0288-1fc6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1fc6A/T0288-1fc6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fc6A read from 1fc6A/T0288-1fc6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fc6A in training set T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 159 :SVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMI 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0288 77 :VKGEVTIHYNKLQY 1fc6A 223 :ADSQVEVVLHAPGA Number of specific fragments extracted= 3 number of extra gaps= 0 total=105 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1503885237.pdb -s /var/tmp/to_scwrl_1503885237.seq -o /var/tmp/from_scwrl_1503885237.pdb > /var/tmp/scwrl_1503885237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1503885237.pdb Number of alignments=30 # command:# reading script from file T0288.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g9oA/T0288-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1g9oA/T0288-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g9oA read from 1g9oA/T0288-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g9oA in training set T0288 2 :MVPGKVTLQKDAQN 1g9oA 10 :MLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=109 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1219407970.pdb -s /var/tmp/to_scwrl_1219407970.seq -o /var/tmp/from_scwrl_1219407970.pdb > /var/tmp/scwrl_1219407970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1219407970.pdb Number of alignments=31 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fe5A/T0288-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2fe5A/T0288-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fe5A read from 2fe5A/T0288-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fe5A in template set T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=112 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_2416949.pdb -s /var/tmp/to_scwrl_2416949.seq -o /var/tmp/from_scwrl_2416949.pdb > /var/tmp/scwrl_2416949.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2416949.pdb Number of alignments=32 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tp5A/T0288-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1tp5A/T0288-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tp5A read from 1tp5A/T0288-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 1 :SMVPGKVTLQKDAQN 1tp5A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1tp5A 323 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKL 1tp5A 390 :AQYK Number of specific fragments extracted= 4 number of extra gaps= 1 total=116 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_12260289.pdb -s /var/tmp/to_scwrl_12260289.seq -o /var/tmp/from_scwrl_12260289.pdb > /var/tmp/scwrl_12260289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_12260289.pdb Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fcfA/T0288-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2fcfA/T0288-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fcfA read from 2fcfA/T0288-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=119 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_655495367.pdb -s /var/tmp/to_scwrl_655495367.seq -o /var/tmp/from_scwrl_655495367.pdb > /var/tmp/scwrl_655495367.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_655495367.pdb Number of alignments=34 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f0aA/T0288-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2f0aA/T0288-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f0aA read from 2f0aA/T0288-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQ 2f0aA 252 :IITVTLN T0288 16 :LIGISIGG 2f0aA 264 :FLGISIVG T0288 24 :GAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 274 :NERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=123 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_561717988.pdb -s /var/tmp/to_scwrl_561717988.seq -o /var/tmp/from_scwrl_561717988.pdb > /var/tmp/scwrl_561717988.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_561717988.pdb Number of alignments=35 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wf7A/T0288-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1wf7A/T0288-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1wf7A read from 1wf7A/T0288-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1wf7A in template set T0288 2 :MVPGKVTLQ 1wf7A 4 :GSSGSVSLV T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=126 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1407392291.pdb -s /var/tmp/to_scwrl_1407392291.seq -o /var/tmp/from_scwrl_1407392291.pdb > /var/tmp/scwrl_1407392291.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1407392291.pdb Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fc6A/T0288-1fc6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1fc6A/T0288-1fc6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fc6A read from 1fc6A/T0288-1fc6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fc6A in training set T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 159 :SVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMI 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0288 77 :VKGEVTIHYNKLQY 1fc6A 223 :ADSQVEVVLHAPGA Number of specific fragments extracted= 3 number of extra gaps= 0 total=129 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1841585794.pdb -s /var/tmp/to_scwrl_1841585794.seq -o /var/tmp/from_scwrl_1841585794.pdb > /var/tmp/scwrl_1841585794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1841585794.pdb Number of alignments=37 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f5yA/T0288-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2f5yA/T0288-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f5yA read from 2f5yA/T0288-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f5yA)V95 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGG 2f5yA 28 :FGFTICC T0288 28 :CPCLYIVQVFDNTPAALDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 5 number of extra gaps= 1 total=134 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_389040743.pdb -s /var/tmp/to_scwrl_389040743.seq -o /var/tmp/from_scwrl_389040743.pdb > /var/tmp/scwrl_389040743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_389040743.pdb Number of alignments=38 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i16/T0288-1i16-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1i16/T0288-1i16-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1i16 read from 1i16/T0288-1i16-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1i16 in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1i16 28 :ATVCTVTLEKMSAGLGFSLEGGKG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0288 81 :VTIHY 1i16 110 :VTIVI T0288 87 :KLQYYK 1i16 115 :RRKSLQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=138 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_733053144.pdb -s /var/tmp/to_scwrl_733053144.seq -o /var/tmp/from_scwrl_733053144.pdb > /var/tmp/scwrl_733053144.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_733053144.pdb Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n99A/T0288-1n99A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1n99A/T0288-1n99A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1n99A read from 1n99A/T0288-1n99A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 86 :NKLQYY 1n99A 191 :RDRPFE Number of specific fragments extracted= 5 number of extra gaps= 1 total=143 # request to SCWRL produces command: ulimit -t 84 ; scwrl3 -i /var/tmp/to_scwrl_1433102828.pdb -s /var/tmp/to_scwrl_1433102828.seq -o /var/tmp/from_scwrl_1433102828.pdb > /var/tmp/scwrl_1433102828.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1433102828.pdb Number of alignments=40 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0288//projects/compbio/experiments/protein-predict/casp7/constraints/T0288/manyalignments.under or /projects/compbio/experiments/protein-predict/casp7/T0288//projects/compbio/experiments/protein-predict/casp7/constraints/T0288/manyalignments.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints/T0288/manyalignments.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints/T0288/manyalignments.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vj6A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1vj6A/merged-a2m # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0288)D45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0288 17 :IGISIGGGAQYC 1vj6A 25 :LGISVTGGVNTS T0288 29 :PCLYIVQVFD 1vj6A 40 :GGIYVKAIIP T0288 41 :PAA 1vj6A 52 :AAE T0288 46 :GT 1vj6A 57 :GR T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ Number of specific fragments extracted= 5 number of extra gaps= 3 total=148 Number of alignments=41 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0288)D45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0288 15 :NLIGISIGGGAQYC 1vj6A 23 :GSLGISVTGGVNTS T0288 29 :PCLYIVQVFD 1vj6A 40 :GGIYVKAIIP T0288 41 :PAA 1vj6A 52 :AAE T0288 46 :GT 1vj6A 57 :GR T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQ 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLR Number of specific fragments extracted= 5 number of extra gaps= 3 total=153 Number of alignments=42 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0288)D45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 Warning: unaligning (T0288)Y91 because last residue in template chain is (1vj6A)P102 T0288 1 :SMVPGKVTLQKDAQN 1vj6A 10 :PGDTFEVELAKTDGS T0288 17 :IGISIGGGAQYCP 1vj6A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFD 1vj6A 41 :GIYVKAIIP T0288 41 :PAA 1vj6A 52 :AAE T0288 46 :GT 1vj6A 57 :GR T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 6 number of extra gaps= 3 total=159 Number of alignments=43 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0288)D45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 Warning: unaligning (T0288)Y91 because last residue in template chain is (1vj6A)P102 T0288 1 :S 1vj6A 10 :P T0288 5 :GKVTLQKDAQN 1vj6A 14 :FEVELAKTDGS T0288 17 :IGISIGGGAQYCP 1vj6A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFD 1vj6A 41 :GIYVKAIIP T0288 41 :PAA 1vj6A 52 :AAE T0288 46 :GT 1vj6A 57 :GR T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 7 number of extra gaps= 3 total=166 Number of alignments=44 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0288)D45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 Warning: unaligning (T0288)Y91 because last residue in template chain is (1vj6A)P102 T0288 5 :GKVTLQKDAQN 1vj6A 14 :FEVELAKTDGS T0288 17 :IGISIGGGAQYCP 1vj6A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFD 1vj6A 41 :GIYVKAIIP T0288 41 :PAA 1vj6A 52 :AAE T0288 46 :GT 1vj6A 57 :GR T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 6 number of extra gaps= 3 total=172 Number of alignments=45 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0288)D45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0288 4 :PGKVTLQKDAQN 1vj6A 13 :TFEVELAKTDGS T0288 17 :IGISIGGGAQYCP 1vj6A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFD 1vj6A 41 :GIYVKAIIP T0288 41 :PAA 1vj6A 52 :AAE T0288 46 :GT 1vj6A 57 :GR T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG Number of specific fragments extracted= 6 number of extra gaps= 3 total=178 Number of alignments=46 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0288)D45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 Warning: unaligning (T0288)Y91 because last residue in template chain is (1vj6A)P102 T0288 1 :SMVPGKVTLQKDAQN 1vj6A 10 :PGDTFEVELAKTDGS T0288 17 :IGISIGGGAQYCP 1vj6A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFD 1vj6A 41 :GIYVKAIIP T0288 41 :PAA 1vj6A 52 :AAE T0288 46 :GT 1vj6A 57 :GR T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 6 number of extra gaps= 3 total=184 Number of alignments=47 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0288)D45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 Warning: unaligning (T0288)Y91 because last residue in template chain is (1vj6A)P102 T0288 4 :P 1vj6A 10 :P T0288 5 :GKVTLQKDAQN 1vj6A 14 :FEVELAKTDGS T0288 17 :IGISIGGGAQYCP 1vj6A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFD 1vj6A 41 :GIYVKAIIP T0288 41 :PAA 1vj6A 52 :AAE T0288 46 :GT 1vj6A 57 :GR T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 7 number of extra gaps= 3 total=191 Number of alignments=48 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0288)D45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0288 6 :KVTLQKDAQN 1vj6A 15 :EVELAKTDGS T0288 17 :IGISIGGGAQYCP 1vj6A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFD 1vj6A 41 :GIYVKAIIP T0288 41 :PAA 1vj6A 52 :AAE T0288 46 :GT 1vj6A 57 :GR T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLL Number of specific fragments extracted= 6 number of extra gaps= 3 total=197 Number of alignments=49 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0288)D45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0288 5 :GKVTLQKDAQN 1vj6A 14 :FEVELAKTDGS T0288 17 :IGISIGGGAQYCP 1vj6A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFD 1vj6A 41 :GIYVKAIIP T0288 41 :PAA 1vj6A 52 :AAE T0288 46 :GT 1vj6A 57 :GR T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLE Number of specific fragments extracted= 6 number of extra gaps= 3 total=203 Number of alignments=50 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0288)D45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 Warning: unaligning (T0288)Y91 because last residue in template chain is (1vj6A)P102 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1vj6A 9 :KPGDTFEVELAKTDGSLGISVTGGVN T0288 27 :YCPCLYIVQVFD 1vj6A 38 :RHGGIYVKAIIP T0288 41 :PAA 1vj6A 52 :AAE T0288 46 :GT 1vj6A 57 :GR T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 5 number of extra gaps= 3 total=208 Number of alignments=51 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0288)D45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 Warning: unaligning (T0288)Y91 because last residue in template chain is (1vj6A)P102 T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1vj6A 10 :PGDTFEVELAKTDGSLGISVTGGVN T0288 27 :YCPCLYIVQVFD 1vj6A 38 :RHGGIYVKAIIP T0288 41 :PAA 1vj6A 52 :AAE T0288 46 :GT 1vj6A 57 :GR T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 5 number of extra gaps= 3 total=213 Number of alignments=52 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0288)D45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1vj6A 9 :KPGDTFEVELAKTDGSLGISVTGGVN T0288 27 :YCPCLYIVQVFD 1vj6A 38 :RHGGIYVKAIIP T0288 41 :PAA 1vj6A 52 :AAE T0288 46 :GT 1vj6A 57 :GR T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHL Number of specific fragments extracted= 5 number of extra gaps= 3 total=218 Number of alignments=53 # 1vj6A read from 1vj6A/merged-a2m # found chain 1vj6A in template set Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)G51 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)G51 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)D56 Warning: unaligning (T0288)D45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)D56 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vj6A)H60 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vj6A)H60 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1vj6A 13 :TFEVELAKTDGSLGISVTGGVN T0288 27 :YCPCLYIVQVFD 1vj6A 38 :RHGGIYVKAIIP T0288 41 :PAA 1vj6A 52 :AAE T0288 46 :GT 1vj6A 57 :GR T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1vj6A 61 :KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL Number of specific fragments extracted= 5 number of extra gaps= 3 total=223 Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fneA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2fneA/merged-a2m # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2fneA 1986 :IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=224 Number of alignments=55 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0288 9 :LQKD 2fneA 1962 :LERG T0288 14 :QNLIGISIGGGAQYC 2fneA 1966 :PDGLGFSIVGGYGSP T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2fneA 1984 :LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTL Number of specific fragments extracted= 3 number of extra gaps= 0 total=227 Number of alignments=56 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2fneA)M1954 T0288 4 :P 2fneA 1955 :P T0288 5 :GKVTLQKDAQN 2fneA 1958 :KSITLERGPDG T0288 17 :IGISIGGGAQYCP 2fneA 1969 :LGFSIVGGYGSPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fneA 1985 :PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=231 Number of alignments=57 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2fneA)M1954 T0288 4 :P 2fneA 1955 :P T0288 5 :GKVTLQKDAQN 2fneA 1958 :KSITLERGPDG T0288 17 :IGISIGGGAQYCP 2fneA 1969 :LGFSIVGGYGSPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fneA 1985 :PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=235 Number of alignments=58 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0288 7 :VTLQKDAQN 2fneA 1960 :ITLERGPDG T0288 17 :IGISIGGGAQYCP 2fneA 1969 :LGFSIVGGYGSPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 2fneA 1985 :PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS Number of specific fragments extracted= 3 number of extra gaps= 0 total=238 Number of alignments=59 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0288 5 :GKVTLQKDAQN 2fneA 1958 :KSITLERGPDG T0288 17 :IGISIGGGAQYCP 2fneA 1969 :LGFSIVGGYGSPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 2fneA 1985 :PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS Number of specific fragments extracted= 3 number of extra gaps= 0 total=241 Number of alignments=60 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2fneA)M1954 Warning: unaligning (T0288)K92 because last residue in template chain is (2fneA)V2048 T0288 4 :P 2fneA 1955 :P T0288 5 :GKVTLQKDAQN 2fneA 1958 :KSITLERGPDG T0288 17 :IGISIGGGAQYCP 2fneA 1969 :LGFSIVGGYGSPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fneA 1985 :PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLM T0288 85 :YNKLQYY 2fneA 2041 :LSSDETS Number of specific fragments extracted= 5 number of extra gaps= 0 total=246 Number of alignments=61 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2fneA)M1954 T0288 4 :P 2fneA 1955 :P T0288 5 :GKVTLQKDAQN 2fneA 1958 :KSITLERGPDG T0288 17 :IGISIGGGAQYCP 2fneA 1969 :LGFSIVGGYGSPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fneA 1985 :PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLM T0288 87 :KLQY 2fneA 2043 :SDET T0288 92 :KV 2fneA 2047 :SV Number of specific fragments extracted= 6 number of extra gaps= 0 total=252 Number of alignments=62 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0288 5 :GKVTLQKDAQN 2fneA 1958 :KSITLERGPDG T0288 17 :IGISIGGGAQYCP 2fneA 1969 :LGFSIVGGYGSPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fneA 1985 :PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLM Number of specific fragments extracted= 3 number of extra gaps= 0 total=255 Number of alignments=63 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0288 5 :GKVTLQKDAQN 2fneA 1958 :KSITLERGPDG T0288 17 :IGISIGGGAQYCP 2fneA 1969 :LGFSIVGGYGSPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fneA 1985 :PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLM Number of specific fragments extracted= 3 number of extra gaps= 0 total=258 Number of alignments=64 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2fneA)M1954 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fneA 1982 :GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=260 Number of alignments=65 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2fneA)M1954 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fneA 1982 :GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETSV Number of specific fragments extracted= 2 number of extra gaps= 0 total=262 Number of alignments=66 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2fneA)M1954 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2fneA 1982 :GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTL Number of specific fragments extracted= 2 number of extra gaps= 0 total=264 Number of alignments=67 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 2fneA 1957 :CKSITLERGPDGLGFSIVGGYG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 2fneA 1982 :GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV Number of specific fragments extracted= 2 number of extra gaps= 0 total=266 Number of alignments=68 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bygA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2bygA/merged-a2m # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 2bygA 222 :IYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=267 Number of alignments=69 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0288 17 :IGISIGGGA 2bygA 203 :LGFSIAGGV T0288 26 :QYCP 2bygA 214 :QHIP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2bygA 221 :SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT Number of specific fragments extracted= 3 number of extra gaps= 0 total=270 Number of alignments=70 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0288 1 :SMVPGKVTLQKDAQN 2bygA 188 :SMTVVEIKLFKGPKG T0288 17 :IGISIGGGAQYCP 2bygA 203 :LGFSIAGGVGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 2bygA 221 :SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=273 Number of alignments=71 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0288 1 :SMVPGKVTLQKDAQN 2bygA 188 :SMTVVEIKLFKGPKG T0288 17 :IGISIGGGAQYCP 2bygA 203 :LGFSIAGGVGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 2bygA 221 :SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=276 Number of alignments=72 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0288 1 :SMVPGKVTLQKDAQN 2bygA 188 :SMTVVEIKLFKGPKG T0288 17 :IGISIGGGAQYCP 2bygA 203 :LGFSIAGGVGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 2bygA 221 :SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=279 Number of alignments=73 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0288 3 :VPGKVTLQKDAQN 2bygA 190 :TVVEIKLFKGPKG T0288 17 :IGISIGGGAQYCP 2bygA 203 :LGFSIAGGVGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 2bygA 221 :SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=282 Number of alignments=74 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set Warning: unaligning (T0288)K92 because last residue in template chain is (2bygA)Y283 T0288 1 :SMVPGKVTLQKDAQN 2bygA 188 :SMTVVEIKLFKGPKG T0288 17 :IGISIGGGAQYCP 2bygA 203 :LGFSIAGGVGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 2bygA 221 :SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=285 Number of alignments=75 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set Warning: unaligning (T0288)K92 because last residue in template chain is (2bygA)Y283 T0288 1 :SMVPGKVTLQKDAQN 2bygA 188 :SMTVVEIKLFKGPKG T0288 17 :IGISIGGGAQYCP 2bygA 203 :LGFSIAGGVGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2bygA 221 :SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLK T0288 86 :NKLQYY 2bygA 277 :GKPTTI Number of specific fragments extracted= 4 number of extra gaps= 0 total=289 Number of alignments=76 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0288 1 :SMVPGKVTLQKDAQN 2bygA 188 :SMTVVEIKLFKGPKG T0288 17 :IGISIGGGAQYCP 2bygA 203 :LGFSIAGGVGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2bygA 221 :SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLK Number of specific fragments extracted= 3 number of extra gaps= 0 total=292 Number of alignments=77 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0288 4 :PGKVTLQKDAQN 2bygA 191 :VVEIKLFKGPKG T0288 17 :IGISIGGGAQYCP 2bygA 203 :LGFSIAGGVGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2bygA 221 :SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLK T0288 86 :NK 2bygA 277 :GK Number of specific fragments extracted= 4 number of extra gaps= 0 total=296 Number of alignments=78 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set Warning: unaligning (T0288)K92 because last residue in template chain is (2bygA)Y283 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 2bygA 187 :QSMTVVEIKLFKGPKGLGFSIAGGVG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 2bygA 218 :GDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=298 Number of alignments=79 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set Warning: unaligning (T0288)K92 because last residue in template chain is (2bygA)Y283 T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 2bygA 188 :SMTVVEIKLFKGPKGLGFSIAGGVG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 2bygA 218 :GDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=300 Number of alignments=80 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 2bygA 191 :VVEIKLFKGPKGLGFSIAGGVG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2bygA 218 :GDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYL Number of specific fragments extracted= 2 number of extra gaps= 0 total=302 Number of alignments=81 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 2bygA 191 :VVEIKLFKGPKGLGFSIAGGVG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 2bygA 218 :GDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV Number of specific fragments extracted= 2 number of extra gaps= 0 total=304 Number of alignments=82 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1y8tA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1y8tA expands to /projects/compbio/data/pdb/1y8t.pdb.gz 1y8tA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0288 read from 1y8tA/merged-a2m # 1y8tA read from 1y8tA/merged-a2m # adding 1y8tA to template set # found chain 1y8tA in template set Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0288)K78 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 Warning: unaligning (T0288)Y91 because last residue in template chain is (1y8tA)A314 T0288 1 :SMVPGKVTLQK 1y8tA 97 :VSGLTPISLGS T0288 12 :DAQNLIGISIGG 1y8tA 176 :MNAQLVGVNSAI T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 79 :GEVTIHYNKLQY 1y8tA 302 :GGSRTVQVTLGK Number of specific fragments extracted= 7 number of extra gaps= 5 total=311 Number of alignments=83 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)P4 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S7 Warning: unaligning (T0288)K6 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0288)K78 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 Warning: unaligning (T0288)Y91 because last residue in template chain is (1y8tA)A314 T0288 5 :G 1y8tA 8 :V T0288 8 :TLQ 1y8tA 21 :MLE T0288 11 :KDAQNLIGISIGG 1y8tA 175 :NMNAQLVGVNSAI T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 79 :GEVTIHYNKLQY 1y8tA 302 :GGSRTVQVTLGK Number of specific fragments extracted= 8 number of extra gaps= 7 total=319 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 T0288 31 :LYIVQVFDN 1y8tA 244 :AKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 78 :KGEVTIHY 1y8tA 290 :GATVALTF Number of specific fragments extracted= 5 number of extra gaps= 4 total=324 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 T0288 16 :LIGISIGG 1y8tA 180 :LVGVNSAI T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 78 :KGEVTIH 1y8tA 290 :GATVALT Number of specific fragments extracted= 6 number of extra gaps= 4 total=330 Number of alignments=84 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)L9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)A83 Warning: unaligning (T0288)Q10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)A83 Warning: unaligning (T0288)K11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)D84 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S87 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S87 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)D88 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 T0288 1 :SMVPGKVT 1y8tA 74 :RTAPFTVV T0288 12 :D 1y8tA 85 :P T0288 16 :LIGISIGGGAQYCP 1y8tA 89 :IAVVRVQGVSGLTP T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 78 :KGEVTIHY 1y8tA 290 :GATVALTF T0288 86 :NKLQYYKV 1y8tA 302 :GGSRTVQV Number of specific fragments extracted= 9 number of extra gaps= 6 total=339 Number of alignments=85 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)K6 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A55 Warning: unaligning (T0288)L9 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L173 Warning: unaligning (T0288)G24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)T189 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T189 Warning: unaligning (T0288)Q26 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1y8tA)Q198 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 T0288 1 :SMVPG 1y8tA 49 :HVIAA T0288 7 :VT 1y8tA 80 :VV T0288 10 :QKDAQNLIGISIGG 1y8tA 174 :VNMNAQLVGVNSAI T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 78 :KGEVTIHY 1y8tA 290 :GATVALTF T0288 86 :NKLQYYKV 1y8tA 302 :GGSRTVQV Number of specific fragments extracted= 9 number of extra gaps= 8 total=348 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 T0288 31 :LYIVQVFDN 1y8tA 244 :AKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 78 :KGEVTIHY 1y8tA 290 :GATVALTF Number of specific fragments extracted= 5 number of extra gaps= 4 total=353 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 78 :KGEVTIHY 1y8tA 290 :GATVALTF Number of specific fragments extracted= 5 number of extra gaps= 4 total=358 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set T0288 39 :NTPAALDGTVAAG 1y8tA 121 :GSPLGLEGTVTTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=359 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set T0288 41 :PAALDGTVAAG 1y8tA 123 :PLGLEGTVTTG Number of specific fragments extracted= 1 number of extra gaps= 0 total=360 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)M2 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0288)T8 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0288)L9 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0288)L16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0288)I17 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0288)K87 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0288)L88 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0288)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0288 1 :S 1y8tA 18 :S T0288 4 :PGKV 1y8tA 21 :MLET T0288 15 :N 1y8tA 32 :E T0288 18 :GISIGGGAQYCP 1y8tA 35 :GIILSAEGLILT T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 78 :KGEVTIHYN 1y8tA 290 :GATVALTFQ T0288 90 :YY 1y8tA 302 :GG Number of specific fragments extracted= 10 number of extra gaps= 8 total=370 Number of alignments=86 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)M2 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0288)T8 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0288)L9 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0288)L16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0288)I17 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0288)K87 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0288)L88 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0288)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0288 1 :S 1y8tA 18 :S T0288 4 :PGKV 1y8tA 21 :MLET T0288 15 :N 1y8tA 32 :E T0288 18 :GISIGGGAQ 1y8tA 35 :GIILSAEGL T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 78 :KGEVTIHYN 1y8tA 290 :GATVALTFQ T0288 90 :YY 1y8tA 302 :GG Number of specific fragments extracted= 10 number of extra gaps= 8 total=380 Number of alignments=87 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0288)D12 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0288)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)K87 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0288)L88 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0288)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0288 8 :TLQK 1y8tA 21 :MLET T0288 17 :I 1y8tA 32 :E T0288 20 :SIGGGAQ 1y8tA 35 :GIILSAE T0288 28 :CP 1y8tA 42 :GL T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKG 1y8tA 274 :INS T0288 67 :KVEVAKMIQEV 1y8tA 277 :ADALVAAVRSK T0288 78 :KGEVTIHYN 1y8tA 290 :GATVALTFQ T0288 90 :YY 1y8tA 302 :GG Number of specific fragments extracted= 11 number of extra gaps= 7 total=391 Number of alignments=88 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1y8tA)G6 Warning: unaligning (T0288)P4 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S7 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0288)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)K87 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0288)L88 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0288)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0288 8 :TLQK 1y8tA 21 :MLET T0288 17 :I 1y8tA 32 :E T0288 20 :SIGGGAQ 1y8tA 35 :GIILSAE T0288 28 :CP 1y8tA 42 :GL T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKG 1y8tA 274 :INS T0288 67 :KVEVAKMIQEV 1y8tA 277 :ADALVAAVRSK T0288 78 :KGEVTIHYN 1y8tA 290 :GATVALTFQ T0288 90 :YY 1y8tA 302 :GG Number of specific fragments extracted= 11 number of extra gaps= 6 total=402 Number of alignments=89 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)K11 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0288)D12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0288)A13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0288)A25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0288)Q26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0288)Y27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0288)K87 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0288)L88 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 T0288 14 :QNLIGISIG 1y8tA 228 :HASLGVQVT T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 78 :KGEVTIHYN 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 6 number of extra gaps= 7 total=408 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)K11 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0288)D12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0288)A13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0288)A25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0288)Q26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0288)Y27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0288)K87 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0288)L88 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 T0288 14 :QNLIGISIG 1y8tA 228 :HASLGVQVT T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 78 :KGEVTIHYN 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 6 number of extra gaps= 7 total=414 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0288)A25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0288)Q26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0288)Y27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)K87 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0288)L88 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0288)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0288 16 :LIGISIG 1y8tA 230 :SLGVQVT T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKG 1y8tA 274 :INS T0288 67 :KVEVAKMIQEV 1y8tA 277 :ADALVAAVRSK T0288 78 :KGEVTIHYN 1y8tA 290 :GATVALTFQ T0288 90 :YY 1y8tA 302 :GG Number of specific fragments extracted= 8 number of extra gaps= 5 total=422 Number of alignments=90 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0288)A25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0288)Q26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0288)Y27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)K87 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0288)L88 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0288)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0288 16 :LIGISIG 1y8tA 230 :SLGVQVT T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKG 1y8tA 274 :INS T0288 67 :KVEVAKMIQEV 1y8tA 277 :ADALVAAVRSK T0288 78 :KGEVTIHYN 1y8tA 290 :GATVALTFQ T0288 90 :YY 1y8tA 302 :GG Number of specific fragments extracted= 8 number of extra gaps= 5 total=430 Number of alignments=91 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)M2 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0288)T8 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0288)L9 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0288)L16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0288)I17 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 T0288 1 :S 1y8tA 18 :S T0288 4 :PGKV 1y8tA 21 :MLET T0288 15 :N 1y8tA 32 :E T0288 18 :GISIGGGAQYCP 1y8tA 35 :GIILSAEGLILT T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 78 :KGEVTIH 1y8tA 290 :GATVALT Number of specific fragments extracted= 9 number of extra gaps= 7 total=439 Number of alignments=92 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)K6 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0288)L16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0288)I17 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 T0288 1 :SMVPG 1y8tA 14 :KVVPS T0288 8 :TLQ 1y8tA 21 :MLE T0288 15 :N 1y8tA 32 :E T0288 18 :GISIGGGA 1y8tA 35 :GIILSAEG T0288 29 :P 1y8tA 43 :L T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 78 :KGEVTIH 1y8tA 290 :GATVALT Number of specific fragments extracted= 10 number of extra gaps= 6 total=449 Number of alignments=93 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)G5 because first residue in template chain is (1y8tA)G6 Warning: unaligning (T0288)K6 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0288)D12 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0288)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 T0288 8 :TLQK 1y8tA 21 :MLET T0288 17 :I 1y8tA 32 :E T0288 20 :SIGGGAQ 1y8tA 35 :GIILSAE T0288 28 :CP 1y8tA 42 :GL T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKG 1y8tA 274 :INS T0288 67 :KVEVAKMIQEV 1y8tA 277 :ADALVAAVRSK T0288 78 :KGEVTIH 1y8tA 290 :GATVALT Number of specific fragments extracted= 10 number of extra gaps= 6 total=459 Number of alignments=94 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)G5 because first residue in template chain is (1y8tA)G6 Warning: unaligning (T0288)K6 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S7 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0288)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 T0288 8 :TLQK 1y8tA 21 :MLET T0288 17 :I 1y8tA 32 :E T0288 20 :SIGGGAQ 1y8tA 35 :GIILSAE T0288 28 :CP 1y8tA 42 :GL T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKG 1y8tA 274 :INS T0288 67 :KVEVAKMIQEV 1y8tA 277 :ADALVAAVRSK T0288 78 :KGEVTIH 1y8tA 290 :GATVALT Number of specific fragments extracted= 10 number of extra gaps= 5 total=469 Number of alignments=95 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)K11 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0288)D12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0288)A13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0288)A25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0288)Q26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 T0288 14 :QNLIGISIG 1y8tA 228 :HASLGVQVT T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 78 :KGEVTIH 1y8tA 290 :GATVALT Number of specific fragments extracted= 6 number of extra gaps= 6 total=475 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)K11 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0288)D12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0288)A13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0288)A25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0288)Q26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 T0288 14 :QNLIGISIG 1y8tA 228 :HASLGVQVT T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 78 :KGEVTIH 1y8tA 290 :GATVALT Number of specific fragments extracted= 6 number of extra gaps= 6 total=481 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0288)A25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0288)Q26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0288 16 :LIGISIG 1y8tA 230 :SLGVQVT T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKG 1y8tA 274 :INS T0288 67 :KVEVAKMIQEV 1y8tA 277 :ADALVAAVRSK T0288 78 :KGEVTIH 1y8tA 290 :GATVALT T0288 87 :K 1y8tA 302 :G Number of specific fragments extracted= 8 number of extra gaps= 5 total=489 Number of alignments=96 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0288)A25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0288)Q26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 T0288 16 :LIGISIG 1y8tA 230 :SLGVQVT T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKG 1y8tA 274 :INS T0288 67 :KVEVAKMIQEV 1y8tA 277 :ADALVAAVRSK T0288 78 :KGEVTIH 1y8tA 290 :GATVALT T0288 89 :Q 1y8tA 304 :S Number of specific fragments extracted= 8 number of extra gaps= 4 total=497 Number of alignments=97 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)M2 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0288)T8 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0288)L9 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0288)L16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0288)I17 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0288)Y27 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0288)K87 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0288)L88 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0288)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0288 1 :S 1y8tA 18 :S T0288 4 :PGKV 1y8tA 21 :MLET T0288 15 :N 1y8tA 32 :E T0288 18 :GISIGGGAQ 1y8tA 35 :GIILSAEGL T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTKVEVAKMIQ 1y8tA 274 :INSADALVAAVRSK T0288 78 :KGEVTIHYN 1y8tA 290 :GATVALTFQ T0288 90 :YYKV 1y8tA 302 :GGSR Number of specific fragments extracted= 10 number of extra gaps= 9 total=507 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)T8 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0288)L9 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0288)L16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0288)I17 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0288)E80 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1y8tA)N152 T0288 5 :GKV 1y8tA 22 :LET T0288 15 :N 1y8tA 32 :E T0288 18 :GISIGGGAQ 1y8tA 35 :GIILSAEGL T0288 27 :YCPCLYIVQVFDNTPAALDG 1y8tA 91 :VVRVQGVSGLTPISLGSSSD T0288 48 :VAAGDEITGVNG 1y8tA 111 :LRVGQPVLAIGS T0288 60 :RSIKGKTKVEVAKMIQEVKG 1y8tA 124 :LGLEGTVTTGIVSALNRPVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=513 Number of alignments=98 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)G5 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0288)Q10 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0288)K11 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0288)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0288)Y27 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0288)K87 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0288)L88 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0288)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0288 6 :KVTL 1y8tA 21 :MLET T0288 17 :I 1y8tA 32 :E T0288 20 :SIGGGAQ 1y8tA 35 :GIILSAE T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKG 1y8tA 274 :INS T0288 67 :KVEVAKMIQE 1y8tA 277 :ADALVAAVRS T0288 78 :KGEVTIHYN 1y8tA 290 :GATVALTFQ T0288 90 :YYKV 1y8tA 302 :GGSR Number of specific fragments extracted= 10 number of extra gaps= 9 total=523 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)G5 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0288)Q10 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0288)K11 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0288)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0288)Y27 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)K78 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0288)Q89 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0288 6 :KVTL 1y8tA 21 :MLET T0288 17 :I 1y8tA 32 :E T0288 20 :SIGGGAQ 1y8tA 35 :GIILSAE T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKG 1y8tA 274 :INS T0288 67 :KVEVAKMIQEV 1y8tA 277 :ADALVAAVRSK T0288 80 :EVTIHYNKL 1y8tA 290 :GATVALTFQ T0288 92 :KV 1y8tA 302 :GG Number of specific fragments extracted= 10 number of extra gaps= 9 total=533 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)K11 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0288)D12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0288)A13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0288)A25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0288)Q26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 T0288 14 :QNLIGISIG 1y8tA 228 :HASLGVQVT T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :I 1y8tA 274 :I Number of specific fragments extracted= 5 number of extra gaps= 5 total=538 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)Q10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)G224 Warning: unaligning (T0288)K11 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0288)D12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0288)A13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0288)A25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0288)Q26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 T0288 14 :QNLIGISIG 1y8tA 228 :HASLGVQVT T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKGKTK 1y8tA 274 :INSADA Number of specific fragments extracted= 5 number of extra gaps= 5 total=543 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0288)A25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0288)Q26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)V77 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0288)K87 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0288)L88 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0288)Q89 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0288 16 :LIGISIG 1y8tA 230 :SLGVQVT T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKG 1y8tA 274 :INS T0288 67 :KVEVAKMIQE 1y8tA 277 :ADALVAAVRS T0288 78 :KGEVTIHYN 1y8tA 290 :GATVALTFQ T0288 90 :YYK 1y8tA 302 :GGS Number of specific fragments extracted= 8 number of extra gaps= 6 total=551 Number of alignments=99 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0288)A25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0288)Q26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0288)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0288)P41 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0288)L44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0288)G46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0288)G59 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0288)R60 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0288)S61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0288)K78 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0288)Q89 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0288 16 :LIGISIG 1y8tA 230 :SLGVQVT T0288 30 :CLYIVQVFDN 1y8tA 243 :GAKIVEVVAG T0288 42 :AA 1y8tA 255 :AA T0288 49 :AAGDEITGVN 1y8tA 261 :PKGVVVTKVD T0288 62 :IKG 1y8tA 274 :INS T0288 67 :KVEVAKMIQEV 1y8tA 277 :ADALVAAVRSK T0288 80 :EVTIHYNKL 1y8tA 290 :GATVALTFQ T0288 92 :K 1y8tA 302 :G Number of specific fragments extracted= 8 number of extra gaps= 6 total=559 Number of alignments=100 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qauA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1qauA/merged-a2m # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1qauA)N14 T0288 4 :PGKVTLQKDAQNLIGISIGGG 1qauA 15 :VISVRLFKRKVGGLGFLVKER T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1qauA 36 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0288 79 :GEVTIHYNKLQ 1qauA 91 :THVVLILRGPE T0288 90 :YYKV 1qauA 122 :VTQP Number of specific fragments extracted= 4 number of extra gaps= 0 total=563 Number of alignments=101 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 6 :KVTLQKDAQNLIGISIGGG 1qauA 17 :SVRLFKRKVGGLGFLVKER T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1qauA 36 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0288 79 :GEVTIHY 1qauA 91 :THVVLIL Number of specific fragments extracted= 3 number of extra gaps= 0 total=566 Number of alignments=102 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1qauA)N14 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1qauA 15 :VISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYYKV 1qauA 90 :ETHVVLILRGPEGFTT Number of specific fragments extracted= 3 number of extra gaps= 0 total=569 Number of alignments=103 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1qauA)N14 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1qauA 15 :VISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYYKV 1qauA 90 :ETHVVLILRGPEGFTT Number of specific fragments extracted= 3 number of extra gaps= 0 total=572 Number of alignments=104 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1qauA 18 :VRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTI 1qauA 90 :ETHVVL Number of specific fragments extracted= 3 number of extra gaps= 0 total=575 Number of alignments=105 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1qauA 17 :SVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qauA 90 :ETHVVLI Number of specific fragments extracted= 3 number of extra gaps= 0 total=578 Number of alignments=106 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1qauA)N14 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1qauA 15 :VISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 2 number of extra gaps= 0 total=580 Number of alignments=107 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1qauA)N14 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1qauA 15 :VISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 2 number of extra gaps= 0 total=582 Number of alignments=108 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1qauA 18 :VRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV Number of specific fragments extracted= 2 number of extra gaps= 0 total=584 Number of alignments=109 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1qauA 17 :SVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL Number of specific fragments extracted= 2 number of extra gaps= 0 total=586 Number of alignments=110 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 1 :SMV 1qauA 14 :NVI T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1qauA 17 :SVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=589 Number of alignments=111 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 1 :SMV 1qauA 14 :NVI T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1qauA 17 :SVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=592 Number of alignments=112 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1qauA 17 :SVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV Number of specific fragments extracted= 2 number of extra gaps= 0 total=594 Number of alignments=113 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1qauA 17 :SVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV Number of specific fragments extracted= 2 number of extra gaps= 0 total=596 Number of alignments=114 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 1qauA 39 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=597 Number of alignments=115 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 1qauA 39 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=598 Number of alignments=116 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 1 :SMV 1qauA 14 :NVI T0288 6 :KVTLQKDAQNLIGISIGGGAQYC 1qauA 17 :SVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 40 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1qauA 90 :ETHVVLILRGPEGF T0288 92 :KV 1qauA 124 :QP Number of specific fragments extracted= 5 number of extra gaps= 0 total=603 Number of alignments=117 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 1 :SM 1qauA 14 :NV T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1qauA 16 :ISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1qauA 90 :ETHVVLILRGPEGF T0288 92 :KV 1qauA 124 :QP Number of specific fragments extracted= 5 number of extra gaps= 0 total=608 Number of alignments=118 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1qauA)N14 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYC 1qauA 15 :VISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 40 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1qauA 90 :ETHVVLILRGPEGF T0288 92 :KV 1qauA 124 :QP Number of specific fragments extracted= 4 number of extra gaps= 0 total=612 Number of alignments=119 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1qauA)N14 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYC 1qauA 15 :VISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 40 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1qauA 90 :ETHVVLILRGPEGF T0288 92 :KV 1qauA 124 :QP Number of specific fragments extracted= 4 number of extra gaps= 0 total=616 Number of alignments=120 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYC 1qauA 15 :VISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 40 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1qauA 90 :ETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=619 Number of alignments=121 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1qauA 16 :ISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKL 1qauA 90 :ETHVVLILRGP Number of specific fragments extracted= 3 number of extra gaps= 0 total=622 Number of alignments=122 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYC 1qauA 15 :VISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 40 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1qauA 90 :ETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=625 Number of alignments=123 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1qauA)N14 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYC 1qauA 15 :VISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 40 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1qauA 90 :ETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=628 Number of alignments=124 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 1 :SMV 1qauA 14 :NVI T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1qauA 17 :SVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qauA 90 :ETHVVLI T0288 85 :YNKLQYYKV 1qauA 117 :PKTIRVTQP Number of specific fragments extracted= 5 number of extra gaps= 0 total=633 Number of alignments=125 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 1 :SMV 1qauA 14 :NVI T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1qauA 17 :SVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qauA 90 :ETHVVLI T0288 85 :YNKLQYYKV 1qauA 117 :PKTIRVTQP Number of specific fragments extracted= 5 number of extra gaps= 0 total=638 Number of alignments=126 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 1 :SMV 1qauA 14 :NVI T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1qauA 17 :SVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qauA 90 :ETHVVLI T0288 85 :YNKLQYYKV 1qauA 117 :PKTIRVTQP Number of specific fragments extracted= 5 number of extra gaps= 0 total=643 Number of alignments=127 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 1 :SM 1qauA 14 :NV T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1qauA 16 :ISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qauA 90 :ETHVVLI T0288 85 :YNKLQYYKV 1qauA 117 :PKTIRVTQP Number of specific fragments extracted= 5 number of extra gaps= 0 total=648 Number of alignments=128 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1qauA 18 :VRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qauA 90 :ETHVVLI Number of specific fragments extracted= 3 number of extra gaps= 0 total=651 Number of alignments=129 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1qauA 17 :SVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qauA 90 :ETHVVLI T0288 85 :Y 1qauA 100 :P Number of specific fragments extracted= 4 number of extra gaps= 0 total=655 Number of alignments=130 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1qauA 15 :VISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qauA 90 :ETHVVLI T0288 85 :YNKLQY 1qauA 107 :LETTFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=659 Number of alignments=131 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1qauA 15 :VISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qauA 90 :ETHVVLI T0288 85 :YNKLQY 1qauA 105 :THLETT Number of specific fragments extracted= 4 number of extra gaps= 0 total=663 Number of alignments=132 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1qauA)N14 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1qauA 15 :VISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 2 number of extra gaps= 0 total=665 Number of alignments=133 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1qauA)N14 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1qauA 15 :VISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 2 number of extra gaps= 0 total=667 Number of alignments=134 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1qauA)N14 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1qauA 15 :VISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS T0288 80 :EVTIHYNKLQYYKV 1qauA 92 :HVVLILRGPEGFTT Number of specific fragments extracted= 3 number of extra gaps= 0 total=670 Number of alignments=135 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 1 :SMV 1qauA 14 :NVI T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1qauA 17 :SVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0288 79 :GEVTIHYNKLQYYKV 1qauA 91 :THVVLILRGPEGFTT Number of specific fragments extracted= 4 number of extra gaps= 0 total=674 Number of alignments=136 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1qauA 18 :VRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV Number of specific fragments extracted= 2 number of extra gaps= 0 total=676 Number of alignments=137 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1qauA 18 :VRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL Number of specific fragments extracted= 2 number of extra gaps= 0 total=678 Number of alignments=138 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1qauA 15 :VISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS T0288 80 :EVTIHYNKLQYY 1qauA 92 :HVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=681 Number of alignments=139 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1qauA 15 :VISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1qauA 38 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0288 79 :GEVTIHYNKLQYYKV 1qauA 91 :THVVLILRGPEGFTT Number of specific fragments extracted= 3 number of extra gaps= 0 total=684 Number of alignments=140 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i16/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1i16/merged-a2m # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 2 :MVPGKVTLQKDAQNL 1i16 28 :ATVCTVTLEKMSAGL T0288 18 :GISIGGGAQ 1i16 43 :GFSLEGGKG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP T0288 79 :GEVTIHYNKLQYYKV 1i16 108 :GPVTIVIRRKSLQSK Number of specific fragments extracted= 4 number of extra gaps= 0 total=688 Number of alignments=141 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 4 :PGKVTLQKDAQNL 1i16 30 :VCTVTLEKMSAGL T0288 18 :GISIGGGAQ 1i16 43 :GFSLEGGKG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP T0288 79 :GEVTIH 1i16 108 :GPVTIV Number of specific fragments extracted= 4 number of extra gaps= 0 total=692 Number of alignments=142 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SMVPGKVTLQKDA 1i16 27 :EATVCTVTLEKMS T0288 15 :NLIGISIGGGAQY 1i16 40 :AGLGFSLEGGKGS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 1i16 56 :DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0288 81 :VTIHYNKLQYYKV 1i16 112 :IVIRRKSLQSKET Number of specific fragments extracted= 4 number of extra gaps= 0 total=696 Number of alignments=143 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SMVPGKVTLQKDA 1i16 27 :EATVCTVTLEKMS T0288 15 :NLIGISIGGGAQY 1i16 40 :AGLGFSLEGGKGS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 1i16 56 :DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0288 81 :VTI 1i16 110 :VTI T0288 84 :HYNKLQYYKV 1i16 115 :RRKSLQSKET Number of specific fragments extracted= 5 number of extra gaps= 0 total=701 Number of alignments=144 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 7 :VTLQKDA 1i16 33 :VTLEKMS T0288 15 :NLIGISIGGGAQY 1i16 40 :AGLGFSLEGGKGS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 1i16 56 :DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0288 81 :VTI 1i16 110 :VTI Number of specific fragments extracted= 4 number of extra gaps= 0 total=705 Number of alignments=145 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 6 :KVTLQKDA 1i16 32 :TVTLEKMS T0288 15 :NLIGISIGGGAQY 1i16 40 :AGLGFSLEGGKGS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 1i16 56 :DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0288 81 :VTI 1i16 110 :VTI Number of specific fragments extracted= 4 number of extra gaps= 0 total=709 Number of alignments=146 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 59 :LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTI 1i16 107 :DGPVTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=711 Number of alignments=147 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 17 :IGISIGGGAQYC 1i16 42 :LGFSLEGGKGSL T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 57 :KPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTI 1i16 107 :DGPVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=714 Number of alignments=148 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SMVPGKVTLQKDAQN 1i16 27 :EATVCTVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIHYNKLQYY 1i16 107 :DGPVTIVIRRKSLQ T0288 92 :KV 1i16 129 :DS Number of specific fragments extracted= 5 number of extra gaps= 0 total=719 Number of alignments=149 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SMVPGKVTLQKDAQN 1i16 27 :EATVCTVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIHYNKLQYY 1i16 107 :DGPVTIVIRRKSLQ T0288 92 :KV 1i16 129 :DS Number of specific fragments extracted= 5 number of extra gaps= 0 total=724 Number of alignments=150 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SMVP 1i16 1 :MPDL T0288 5 :GKVTLQKDAQN 1i16 31 :CTVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIHYNKLQYY 1i16 107 :DGPVTIVIRRKSLQ T0288 92 :KV 1i16 129 :DS Number of specific fragments extracted= 6 number of extra gaps= 0 total=730 Number of alignments=151 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SM 1i16 1 :MP T0288 5 :GKVTLQKDAQN 1i16 31 :CTVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIHYNKLQYY 1i16 107 :DGPVTIVIRRKSLQ T0288 92 :KV 1i16 129 :DS Number of specific fragments extracted= 6 number of extra gaps= 0 total=736 Number of alignments=152 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SMVPGKVTLQKDAQN 1i16 27 :EATVCTVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIHYNKL 1i16 107 :DGPVTIVIRRK Number of specific fragments extracted= 4 number of extra gaps= 0 total=740 Number of alignments=153 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 4 :PGKVTLQKDAQN 1i16 30 :VCTVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIHYNKL 1i16 107 :DGPVTIVIRRK Number of specific fragments extracted= 4 number of extra gaps= 0 total=744 Number of alignments=154 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SMVPGKVTLQKDAQN 1i16 27 :EATVCTVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIHYNKLQYYKV 1i16 107 :DGPVTIVIRRKSLQSK Number of specific fragments extracted= 4 number of extra gaps= 0 total=748 Number of alignments=155 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 2 :MVPGKVTLQKDAQN 1i16 28 :ATVCTVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIHYNKLQYY 1i16 107 :DGPVTIVIRRKSLQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=752 Number of alignments=156 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SMVPGKVTLQKDAQN 1i16 27 :EATVCTVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIH 1i16 107 :DGPVTIV T0288 85 :YNKLQYYKV 1i16 122 :KETTAAGDS Number of specific fragments extracted= 5 number of extra gaps= 0 total=757 Number of alignments=157 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SMVPGKVTLQKDAQN 1i16 27 :EATVCTVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIH 1i16 107 :DGPVTIV T0288 85 :YNKLQYYKV 1i16 122 :KETTAAGDS Number of specific fragments extracted= 5 number of extra gaps= 0 total=762 Number of alignments=158 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SMVP 1i16 1 :MPDL T0288 6 :KVTLQKDAQN 1i16 32 :TVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIH 1i16 107 :DGPVTIV T0288 85 :YNKLQYYKV 1i16 122 :KETTAAGDS Number of specific fragments extracted= 6 number of extra gaps= 0 total=768 Number of alignments=159 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SMVP 1i16 1 :MPDL T0288 6 :KVTLQKDAQN 1i16 32 :TVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIH 1i16 107 :DGPVTIV T0288 85 :YNKLQYYKV 1i16 122 :KETTAAGDS Number of specific fragments extracted= 6 number of extra gaps= 0 total=774 Number of alignments=160 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SMVPGKVTLQKDAQN 1i16 27 :EATVCTVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIH 1i16 107 :DGPVTIV Number of specific fragments extracted= 4 number of extra gaps= 0 total=778 Number of alignments=161 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 4 :PGKVTLQKDAQN 1i16 30 :VCTVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIH 1i16 107 :DGPVTIV Number of specific fragments extracted= 4 number of extra gaps= 0 total=782 Number of alignments=162 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SMVPGKVTLQKDAQN 1i16 27 :EATVCTVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIH 1i16 107 :DGPVTIV T0288 87 :KLQYYK 1i16 117 :KSLQSK Number of specific fragments extracted= 5 number of extra gaps= 0 total=787 Number of alignments=163 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 2 :MVPGKVTLQKDAQN 1i16 28 :ATVCTVTLEKMSAG T0288 17 :IGISIGGGAQYCP 1i16 42 :LGFSLEGGKGSLH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i16 58 :PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0288 78 :KGEVTIH 1i16 107 :DGPVTIV T0288 85 :YNKLQYYK 1i16 115 :RRKSLQSK Number of specific fragments extracted= 5 number of extra gaps= 0 total=792 Number of alignments=164 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1i16 26 :AEATVCTVTLEKMSAGLGFSLEGGKG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQS Number of specific fragments extracted= 2 number of extra gaps= 0 total=794 Number of alignments=165 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :S 1i16 1 :M T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1i16 27 :EATVCTVTLEKMSAGLGFSLEGGKG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQS Number of specific fragments extracted= 3 number of extra gaps= 0 total=797 Number of alignments=166 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :SMV 1i16 1 :MPD T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1i16 30 :VCTVTLEKMSAGLGFSLEGGKG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQS Number of specific fragments extracted= 3 number of extra gaps= 0 total=800 Number of alignments=167 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 1 :S 1i16 1 :M T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1i16 28 :ATVCTVTLEKMSAGLGFSLEGGKG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0288 81 :VTIHYN 1i16 110 :VTIVIR T0288 88 :LQYYKV 1i16 116 :RKSLQS Number of specific fragments extracted= 5 number of extra gaps= 0 total=805 Number of alignments=168 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1i16 30 :VCTVTLEKMSAGLGFSLEGGKG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVT Number of specific fragments extracted= 2 number of extra gaps= 0 total=807 Number of alignments=169 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1i16 30 :VCTVTLEKMSAGLGFSLEGGKG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIV Number of specific fragments extracted= 2 number of extra gaps= 0 total=809 Number of alignments=170 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1i16 27 :EATVCTVTLEKMSAGLGFSLEGGKG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQS Number of specific fragments extracted= 2 number of extra gaps= 0 total=811 Number of alignments=171 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1i16 28 :ATVCTVTLEKMSAGLGFSLEGGKG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 1i16 55 :GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0288 81 :VTIHY 1i16 110 :VTIVI T0288 87 :KLQYYK 1i16 115 :RRKSLQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=815 Number of alignments=172 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1v5lA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1v5lA expands to /projects/compbio/data/pdb/1v5l.pdb.gz 1v5lA:# T0288 read from 1v5lA/merged-a2m # 1v5lA read from 1v5lA/merged-a2m # adding 1v5lA to template set # found chain 1v5lA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLW Number of specific fragments extracted= 2 number of extra gaps= 0 total=817 Number of alignments=173 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLW Number of specific fragments extracted= 2 number of extra gaps= 0 total=819 Number of alignments=174 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 7 :VTL 1v5lA 9 :VVL T0288 11 :KDAQN 1v5lA 12 :PGPAP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 17 :WGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCL Number of specific fragments extracted= 4 number of extra gaps= 0 total=823 Number of alignments=175 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 6 :KVTL 1v5lA 8 :NVVL T0288 11 :KDAQN 1v5lA 12 :PGPAP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 17 :WGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLK Number of specific fragments extracted= 4 number of extra gaps= 0 total=827 Number of alignments=176 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI T0288 86 :NKLQYYKV 1v5lA 88 :ETRLWSPQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=830 Number of alignments=177 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI T0288 86 :NKLQYYKV 1v5lA 88 :ETRLWSPQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=833 Number of alignments=178 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 9 :LQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 9 :VVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCL Number of specific fragments extracted= 2 number of extra gaps= 0 total=835 Number of alignments=179 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 10 :QKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 10 :VLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCL Number of specific fragments extracted= 2 number of extra gaps= 0 total=837 Number of alignments=180 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 18 :GISIGGGAQYCPCLYIVQVFDNTPAAL 1v5lA 18 :GFRLSGGIDFNQPLVITRITPGSKAAA T0288 46 :GTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 1v5lA 45 :ANLCPGDVILAIDGFGTESMTHADAQDRIK Number of specific fragments extracted= 2 number of extra gaps= 0 total=839 Number of alignments=181 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 16 :LIGISIGGGAQYCPCLYIVQVFDNTPAAL 1v5lA 16 :PWGFRLSGGIDFNQPLVITRITPGSKAAA T0288 46 :GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1v5lA 45 :ANLCPGDVILAIDGFGTESMTHADAQDRIKAA Number of specific fragments extracted= 2 number of extra gaps= 0 total=841 Number of alignments=182 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR T0288 92 :KV 1v5lA 102 :SG Number of specific fragments extracted= 3 number of extra gaps= 0 total=844 Number of alignments=183 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 1 :SMVPGKVTL 1v5lA 3 :SGSSGNVVL T0288 12 :DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 12 :PGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR T0288 92 :KV 1v5lA 102 :SG Number of specific fragments extracted= 4 number of extra gaps= 0 total=848 Number of alignments=184 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR T0288 92 :KV 1v5lA 102 :SG Number of specific fragments extracted= 3 number of extra gaps= 0 total=851 Number of alignments=185 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 1 :SMVPGK 1v5lA 1 :GSSGSS T0288 7 :VTL 1v5lA 9 :VVL T0288 12 :DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 12 :PGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR T0288 92 :KV 1v5lA 102 :SG Number of specific fragments extracted= 5 number of extra gaps= 0 total=856 Number of alignments=186 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 9 :LQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 9 :VVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDR Number of specific fragments extracted= 2 number of extra gaps= 0 total=858 Number of alignments=187 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 12 :DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 12 :PGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRA Number of specific fragments extracted= 2 number of extra gaps= 0 total=860 Number of alignments=188 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 7 :VT 1v5lA 9 :VV T0288 11 :KDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 11 :LPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR Number of specific fragments extracted= 3 number of extra gaps= 0 total=863 Number of alignments=189 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 6 :KVTL 1v5lA 8 :NVVL T0288 12 :DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 12 :PGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR Number of specific fragments extracted= 3 number of extra gaps= 0 total=866 Number of alignments=190 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set Warning: unaligning (T0288)L88 because last residue in template chain is (1v5lA)G103 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLK T0288 85 :YNK 1v5lA 100 :PSS Number of specific fragments extracted= 3 number of extra gaps= 0 total=869 Number of alignments=191 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 1 :SMVPGKVTLQ 1v5lA 3 :SGSSGNVVLP T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 13 :GPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLK Number of specific fragments extracted= 3 number of extra gaps= 0 total=872 Number of alignments=192 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLK T0288 87 :KLQ 1v5lA 96 :VSS Number of specific fragments extracted= 3 number of extra gaps= 0 total=875 Number of alignments=193 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 1 :SMVPGK 1v5lA 1 :GSSGSS T0288 7 :VTLQ 1v5lA 9 :VVLP T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 13 :GPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLK T0288 88 :LQ 1v5lA 99 :GP T0288 91 :YKV 1v5lA 101 :SSG Number of specific fragments extracted= 6 number of extra gaps= 0 total=881 Number of alignments=194 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 9 :LQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 9 :VVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR Number of specific fragments extracted= 2 number of extra gaps= 0 total=883 Number of alignments=195 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 12 :DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 12 :PGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLK T0288 86 :NKLQ 1v5lA 85 :DRAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=886 Number of alignments=196 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 6 :KVTL 1v5lA 8 :NVVL T0288 12 :DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 12 :PGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLK T0288 85 :YNKLQYY 1v5lA 87 :AETRLWS Number of specific fragments extracted= 4 number of extra gaps= 0 total=890 Number of alignments=197 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 4 :PGKVTLQ 1v5lA 6 :SGNVVLP T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 13 :GPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLK T0288 87 :KLQYY 1v5lA 87 :AETRL Number of specific fragments extracted= 4 number of extra gaps= 0 total=894 Number of alignments=198 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLW Number of specific fragments extracted= 2 number of extra gaps= 0 total=896 Number of alignments=199 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLW Number of specific fragments extracted= 2 number of extra gaps= 0 total=898 Number of alignments=200 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET T0288 91 :YKV 1v5lA 101 :SSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=901 Number of alignments=201 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET T0288 91 :YKV 1v5lA 101 :SSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=904 Number of alignments=202 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 9 :LQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 9 :VVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCL Number of specific fragments extracted= 2 number of extra gaps= 0 total=906 Number of alignments=203 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 10 :QKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 10 :VLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI Number of specific fragments extracted= 2 number of extra gaps= 0 total=908 Number of alignments=204 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 10 :QKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 10 :VLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR Number of specific fragments extracted= 2 number of extra gaps= 0 total=910 Number of alignments=205 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0288 10 :QKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1v5lA 10 :VLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1v5lA 47 :LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET Number of specific fragments extracted= 2 number of extra gaps= 0 total=912 Number of alignments=206 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tp5A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1tp5A/merged-a2m # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 1 :SMVPGKVTLQKDAQN 1tp5A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1tp5A 323 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKLQYYKV 1tp5A 390 :AQYKPEEYS Number of specific fragments extracted= 4 number of extra gaps= 1 total=916 Number of alignments=207 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 2 :MVPGKVTLQKDAQN 1tp5A 309 :REPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1tp5A 323 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKLQ 1tp5A 390 :AQYKP T0288 90 :YYKV 1tp5A 412 :IVTD Number of specific fragments extracted= 5 number of extra gaps= 1 total=921 Number of alignments=208 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 T0288 7 :VTLQKDAQN 1tp5A 314 :IVIHRGSTG T0288 17 :IGISIGGGAQ 1tp5A 323 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT Number of specific fragments extracted= 3 number of extra gaps= 1 total=924 Number of alignments=209 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 6 :KVTLQKDAQN 1tp5A 313 :RIVIHRGSTG T0288 17 :IGISIGGGAQ 1tp5A 323 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT Number of specific fragments extracted= 3 number of extra gaps= 1 total=927 Number of alignments=210 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKLQYYKV 1tp5A 390 :AQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 1 total=930 Number of alignments=211 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKLQYYKV 1tp5A 390 :AQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 1 total=933 Number of alignments=212 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1tp5A 312 :RRIVIHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=935 Number of alignments=213 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1tp5A 312 :RRIVIHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=937 Number of alignments=214 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 336 :IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT Number of specific fragments extracted= 1 number of extra gaps= 1 total=938 Number of alignments=215 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 T0288 17 :IGISIGGGAQ 1tp5A 323 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=940 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 1 :SMVPGKVTLQKDAQN 1tp5A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1tp5A 323 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKLQYY 1tp5A 390 :AQYKPEE T0288 92 :KV 1tp5A 414 :TD Number of specific fragments extracted= 5 number of extra gaps= 1 total=945 Number of alignments=216 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 1 :SMVPGKVTLQKDAQN 1tp5A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1tp5A 323 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKLQYY 1tp5A 390 :AQYKPEE T0288 92 :KV 1tp5A 414 :TD Number of specific fragments extracted= 5 number of extra gaps= 1 total=950 Number of alignments=217 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 2 :MVPGKVTLQKDAQN 1tp5A 309 :REPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1tp5A 323 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YN 1tp5A 390 :AQ T0288 92 :KV 1tp5A 414 :TD Number of specific fragments extracted= 5 number of extra gaps= 1 total=955 Number of alignments=218 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 3 :VPGKVTLQKDAQN 1tp5A 310 :EPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1tp5A 323 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKL 1tp5A 390 :AQYK T0288 92 :KV 1tp5A 414 :TD Number of specific fragments extracted= 5 number of extra gaps= 1 total=960 Number of alignments=219 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 1 :SMVPGKVTLQKDAQN 1tp5A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1tp5A 323 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKLQY 1tp5A 390 :AQYKPE Number of specific fragments extracted= 4 number of extra gaps= 1 total=964 Number of alignments=220 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 3 :VPGKVTLQKDAQN 1tp5A 310 :EPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1tp5A 323 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKL 1tp5A 390 :AQYK Number of specific fragments extracted= 4 number of extra gaps= 1 total=968 Number of alignments=221 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 2 :MVPGKVTLQKDAQN 1tp5A 309 :REPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1tp5A 323 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNK 1tp5A 390 :AQY Number of specific fragments extracted= 4 number of extra gaps= 1 total=972 Number of alignments=222 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 1 :SMVPGKVTLQKDAQN 1tp5A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1tp5A 323 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKL 1tp5A 390 :AQYK Number of specific fragments extracted= 4 number of extra gaps= 1 total=976 Number of alignments=223 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 1 :SMVPGKVTLQKDAQN 1tp5A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1tp5A 323 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKLQYYKV 1tp5A 407 :DSSGRIVTD Number of specific fragments extracted= 4 number of extra gaps= 1 total=980 Number of alignments=224 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 1 :SMVPGKVTLQKDAQN 1tp5A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1tp5A 323 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 86 :NKLQYYKV 1tp5A 408 :SSGRIVTD Number of specific fragments extracted= 4 number of extra gaps= 1 total=984 Number of alignments=225 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 2 :MVPGKVTLQKDAQN 1tp5A 309 :REPRRIVIHRGSTG T0288 17 :IGISIGGGAQY 1tp5A 323 :LGFNIVGGEDG T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKLQYYKV 1tp5A 407 :DSSGRIVTD Number of specific fragments extracted= 4 number of extra gaps= 1 total=988 Number of alignments=226 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 3 :VPGKVTLQKDAQN 1tp5A 310 :EPRRIVIHRGSTG T0288 17 :IGISIGGGAQY 1tp5A 323 :LGFNIVGGEDG T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKLQYYKV 1tp5A 407 :DSSGRIVTD Number of specific fragments extracted= 4 number of extra gaps= 1 total=992 Number of alignments=227 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 1 :SMVPGKVTLQKDAQN 1tp5A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1tp5A 323 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKLQYY 1tp5A 394 :PEEYSRF Number of specific fragments extracted= 4 number of extra gaps= 1 total=996 Number of alignments=228 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 3 :VPGKVTLQKDAQN 1tp5A 310 :EPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1tp5A 323 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNK 1tp5A 394 :PEE Number of specific fragments extracted= 4 number of extra gaps= 1 total=1000 Number of alignments=229 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 2 :MVPGKVTLQKDAQN 1tp5A 309 :REPRRIVIHRGSTG T0288 17 :IGISIGGGAQY 1tp5A 323 :LGFNIVGGEDG T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT Number of specific fragments extracted= 3 number of extra gaps= 1 total=1003 Number of alignments=230 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 1 :SMVPGKVTLQKDAQN 1tp5A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQY 1tp5A 323 :LGFNIVGGEDG T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT Number of specific fragments extracted= 3 number of extra gaps= 1 total=1006 Number of alignments=231 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)G5 because first residue in template chain is (1tp5A)F301 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1tp5A 312 :RRIVIHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKLQYYKV 1tp5A 390 :AQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 1 total=1009 Number of alignments=232 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)G5 because first residue in template chain is (1tp5A)F301 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1tp5A 312 :RRIVIHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKLQYYKV 1tp5A 390 :AQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 1 total=1012 Number of alignments=233 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNK 1tp5A 390 :AQY Number of specific fragments extracted= 3 number of extra gaps= 1 total=1015 Number of alignments=234 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNKL 1tp5A 390 :AQYK T0288 89 :QYYK 1tp5A 402 :ANSR Number of specific fragments extracted= 4 number of extra gaps= 1 total=1019 Number of alignments=235 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 T0288 8 :TLQKDAQNLIGISIGGGAQ 1tp5A 314 :IVIHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT Number of specific fragments extracted= 2 number of extra gaps= 1 total=1021 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1tp5A 312 :RRIVIHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :Y 1tp5A 390 :A Number of specific fragments extracted= 3 number of extra gaps= 1 total=1024 Number of alignments=236 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1tp5A 309 :REPRRIVIHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNK 1tp5A 390 :AQY Number of specific fragments extracted= 3 number of extra gaps= 1 total=1027 Number of alignments=237 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1tp5A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0288 85 :YNK 1tp5A 390 :AQY Number of specific fragments extracted= 3 number of extra gaps= 1 total=1030 Number of alignments=238 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i92A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1i92A expands to /projects/compbio/data/pdb/1i92.pdb.gz 1i92A:Skipped atom 533, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 543, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 545, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 547, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 549, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 551, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 553, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 555, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 557, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 561, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 563, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 565, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 567, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 569, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 577, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 581, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 1i92A # T0288 read from 1i92A/merged-a2m # 1i92A read from 1i92A/merged-a2m # adding 1i92A to template set # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVP 1i92A 9 :GMLP T0288 6 :KVTLQKDAQNLIGISIGGGA 1i92A 13 :RLCCLEKGPNGYGFHLHGEK T0288 27 :YCPCLYIVQVFDNTPAALDG 1i92A 33 :GKLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQYYKV 1i92A 85 :AVRLLVVDPEQDTR Number of specific fragments extracted= 5 number of extra gaps= 1 total=1035 Number of alignments=239 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVP 1i92A 9 :GMLP T0288 6 :KVTLQKDAQNLIGISIGGGA 1i92A 13 :RLCCLEKGPNGYGFHLHGEK T0288 27 :YCPCLYIVQVFDNTPAALDG 1i92A 33 :GKLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQ 1i92A 85 :AVRLLVVDPE T0288 90 :YYKV 1i92A 96 :DTRL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1041 Number of alignments=240 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 6 :KVTLQKDAQNLIGISIGGGA 1i92A 13 :RLCCLEKGPNGYGFHLHGEK T0288 27 :YCPCLYIVQVFDNTPAALDG 1i92A 33 :GKLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTI 1i92A 85 :AVRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1045 Number of alignments=241 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 7 :VTLQKDAQNLIGISIGGGA 1i92A 14 :LCCLEKGPNGYGFHLHGEK T0288 27 :YCPCLYIVQVFDNTPAALDG 1i92A 33 :GKLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIH 1i92A 85 :AVRLL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1049 Number of alignments=242 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVPGKVTLQK 1i92A 9 :GMLPRLCCLEK T0288 13 :AQNLIGISIGGGAQ 1i92A 20 :GPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALD 1i92A 34 :KLGQYIRLVEPGSPAEKA T0288 47 :TVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 52 :GLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQY 1i92A 85 :AVRLLVVDPEQ T0288 91 :YKV 1i92A 97 :TRL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1055 Number of alignments=243 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 4 :PGKVTLQK 1i92A 12 :PRLCCLEK T0288 13 :AQNLIGISIGGGAQ 1i92A 20 :GPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALD 1i92A 34 :KLGQYIRLVEPGSPAEKA T0288 47 :TVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 52 :GLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHY 1i92A 85 :AVRLLV Number of specific fragments extracted= 5 number of extra gaps= 1 total=1060 Number of alignments=244 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set T0288 32 :YIVQVFDNTPAALDG 1i92A 38 :YIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQ 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1062 Number of alignments=245 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set T0288 31 :LYIVQVFDNTPAALDG 1i92A 37 :QYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1064 Number of alignments=246 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVPGKVTLQKDAQN 1i92A 9 :GMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQYY 1i92A 85 :AVRLLVVDPEQD T0288 92 :KV 1i92A 98 :RL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1070 Number of alignments=247 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVPGKVTLQKDAQN 1i92A 9 :GMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQYY 1i92A 85 :AVRLLVVDPEQD T0288 92 :KV 1i92A 98 :RL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1076 Number of alignments=248 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVPGKVTLQKDAQN 1i92A 9 :GMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQYY 1i92A 85 :AVRLLVVDPEQD T0288 92 :KV 1i92A 98 :RL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1082 Number of alignments=249 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVPGKVTLQKDAQN 1i92A 9 :GMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQYY 1i92A 85 :AVRLLVVDPEQD T0288 92 :KV 1i92A 98 :RL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1088 Number of alignments=250 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVPGKVTLQKDAQN 1i92A 9 :GMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQYY 1i92A 85 :AVRLLVVDPEQD Number of specific fragments extracted= 5 number of extra gaps= 1 total=1093 Number of alignments=251 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 2 :MVPGKVTLQKDAQN 1i92A 10 :MLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKL 1i92A 85 :AVRLLVVDP Number of specific fragments extracted= 5 number of extra gaps= 1 total=1098 Number of alignments=252 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVPGKVTLQKDAQN 1i92A 9 :GMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQYYKV 1i92A 85 :AVRLLVVDPEQDTR Number of specific fragments extracted= 5 number of extra gaps= 1 total=1103 Number of alignments=253 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVPGKVTLQKDAQN 1i92A 9 :GMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQYYKV 1i92A 85 :AVRLLVVDPEQDTR Number of specific fragments extracted= 5 number of extra gaps= 1 total=1108 Number of alignments=254 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVPGKVTLQKDAQN 1i92A 9 :GMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIH 1i92A 85 :AVRLL T0288 85 :YNKLQYYKV 1i92A 91 :VDPEQDTRL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1114 Number of alignments=255 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVPGKVTLQKDAQN 1i92A 9 :GMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIH 1i92A 85 :AVRLL T0288 85 :YNKLQYYKV 1i92A 91 :VDPEQDTRL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1120 Number of alignments=256 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVPGKVTLQKDAQN 1i92A 9 :GMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIH 1i92A 85 :AVRLL T0288 85 :YNKLQYYKV 1i92A 91 :VDPEQDTRL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1126 Number of alignments=257 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVPGKVTLQKDAQN 1i92A 9 :GMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIH 1i92A 85 :AVRLL T0288 85 :YNKLQYYKV 1i92A 91 :VDPEQDTRL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1132 Number of alignments=258 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVPGKVTLQKDAQN 1i92A 9 :GMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIH 1i92A 85 :AVRLL T0288 85 :YN 1i92A 93 :PE Number of specific fragments extracted= 6 number of extra gaps= 1 total=1138 Number of alignments=259 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 2 :MVPGKVTLQKDAQN 1i92A 10 :MLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIH 1i92A 85 :AVRLL T0288 87 :KL 1i92A 93 :PE Number of specific fragments extracted= 6 number of extra gaps= 1 total=1144 Number of alignments=260 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVPGKVTLQKDAQN 1i92A 9 :GMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIH 1i92A 85 :AVRLL T0288 85 :YNKLQYYKV 1i92A 91 :VDPEQDTRL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1150 Number of alignments=261 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVPGKVTLQKDAQN 1i92A 9 :GMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1i92A 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIH 1i92A 85 :AVRLL T0288 85 :YN 1i92A 93 :PE Number of specific fragments extracted= 6 number of extra gaps= 1 total=1156 Number of alignments=262 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQYY 1i92A 85 :AVRLLVVDPEQD T0288 92 :KV 1i92A 98 :RL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1161 Number of alignments=263 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMVP 1i92A 9 :GMLP T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1i92A 13 :RLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQYY 1i92A 85 :AVRLLVVDPEQD T0288 92 :KV 1i92A 98 :RL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1167 Number of alignments=264 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 1 :SMV 1i92A 9 :GML T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1i92A 12 :PRLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQYY 1i92A 85 :AVRLLVVDPEQD T0288 92 :KV 1i92A 98 :RL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1173 Number of alignments=265 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQYYK 1i92A 85 :AVRLLVVDPEQDT Number of specific fragments extracted= 4 number of extra gaps= 1 total=1177 Number of alignments=266 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 7 :VTLQKDAQNLIGISIGGGAQ 1i92A 14 :LCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTI 1i92A 85 :AVRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1181 Number of alignments=267 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1i92A 13 :RLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHY 1i92A 85 :AVRLLV Number of specific fragments extracted= 4 number of extra gaps= 1 total=1185 Number of alignments=268 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQYYKV 1i92A 85 :AVRLLVVDPEQDTR Number of specific fragments extracted= 4 number of extra gaps= 1 total=1189 Number of alignments=269 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0288)G79 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1i92A 11 :LPRLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1i92A 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1i92A 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA T0288 80 :EVTIHYNKLQYYKV 1i92A 85 :AVRLLVVDPEQDTR Number of specific fragments extracted= 4 number of extra gaps= 1 total=1193 Number of alignments=270 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bfeA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bfeA expands to /projects/compbio/data/pdb/1bfe.pdb.gz 1bfeA:# T0288 read from 1bfeA/merged-a2m # 1bfeA read from 1bfeA/merged-a2m # adding 1bfeA to template set # found chain 1bfeA in template set T0288 1 :SMVPGKVTLQKDAQ 1bfeA 308 :PREPRRIVIHRGST T0288 16 :LIGISIGGGAQ 1bfeA 322 :GLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1196 Number of alignments=271 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 1 :SMVPGKVTLQKDAQ 1bfeA 308 :PREPRRIVIHRGST T0288 16 :LIGISIGGGAQ 1bfeA 322 :GLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP T0288 90 :YYKV 1bfeA 412 :IVTN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1200 Number of alignments=272 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 7 :VTLQKDAQ 1bfeA 314 :IVIHRGST T0288 16 :LIGISIGGGAQ 1bfeA 322 :GLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=1203 Number of alignments=273 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 5 :GKVTLQKDAQ 1bfeA 312 :RRIVIHRGST T0288 16 :LIGISIGGGAQ 1bfeA 322 :GLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=1206 Number of alignments=274 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 1 :SMVPGKVTLQK 1bfeA 308 :PREPRRIVIHR T0288 13 :AQNLIGISIGGGAQ 1bfeA 319 :GSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE T0288 91 :Y 1bfeA 400 :F Number of specific fragments extracted= 4 number of extra gaps= 0 total=1210 Number of alignments=275 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 4 :PGKVTLQK 1bfeA 311 :PRRIVIHR T0288 13 :AQNLIGISIGGGAQ 1bfeA 319 :GSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1213 Number of alignments=276 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1bfeA 336 :IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=1214 Number of alignments=277 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 17 :IGISIGGGAQ 1bfeA 323 :LGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=1216 Number of alignments=278 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 1 :SMVPGKVTLQKDAQN 1bfeA 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1bfeA 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1bfeA 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEE T0288 92 :KV 1bfeA 414 :TN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1220 Number of alignments=279 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 1 :SMVPGKVTLQKDAQN 1bfeA 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1bfeA 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1bfeA 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEE T0288 92 :KV 1bfeA 414 :TN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1224 Number of alignments=280 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 1 :SMVP 1bfeA 306 :DIPR T0288 5 :GKVTLQKDAQN 1bfeA 312 :RRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1bfeA 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 1bfeA 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQ T0288 92 :KV 1bfeA 414 :TN Number of specific fragments extracted= 5 number of extra gaps= 0 total=1229 Number of alignments=281 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1bfeA)D306 T0288 3 :VP 1bfeA 307 :IP T0288 5 :GKVTLQKDAQN 1bfeA 312 :RRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1bfeA 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1bfeA 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0288 92 :KV 1bfeA 414 :TN Number of specific fragments extracted= 5 number of extra gaps= 0 total=1234 Number of alignments=282 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 1 :SMVPGKVTLQKDAQN 1bfeA 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1bfeA 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1bfeA 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE Number of specific fragments extracted= 3 number of extra gaps= 0 total=1237 Number of alignments=283 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 3 :VPGKVTLQKDAQN 1bfeA 310 :EPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1bfeA 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1bfeA 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1240 Number of alignments=284 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 1 :SMVPGKVTLQKDAQN 1bfeA 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1bfeA 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1bfeA 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 3 number of extra gaps= 0 total=1243 Number of alignments=285 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 2 :MVPGKVTLQKDAQN 1bfeA 309 :REPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1bfeA 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1bfeA 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1246 Number of alignments=286 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 1 :SMVPGKVTLQKDAQN 1bfeA 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1bfeA 323 :LGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII T0288 85 :YNKLQYYKV 1bfeA 407 :NSSGRIVTN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1250 Number of alignments=287 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 1 :SMVPGKVTLQKDAQN 1bfeA 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1bfeA 323 :LGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII T0288 85 :YNKLQYYKV 1bfeA 407 :NSSGRIVTN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1254 Number of alignments=288 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 1 :SMVP 1bfeA 306 :DIPR T0288 5 :GKVTLQKDAQN 1bfeA 312 :RRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1bfeA 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1bfeA 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII T0288 85 :YNKLQYYKV 1bfeA 407 :NSSGRIVTN Number of specific fragments extracted= 5 number of extra gaps= 0 total=1259 Number of alignments=289 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1bfeA)D306 T0288 3 :VP 1bfeA 307 :IP T0288 5 :GKVTLQKDAQN 1bfeA 312 :RRIVIHRGSTG T0288 17 :IGISIGGGAQY 1bfeA 323 :LGFNIIGGEDG T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1bfeA 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII T0288 85 :YNKLQYYKV 1bfeA 407 :NSSGRIVTN Number of specific fragments extracted= 5 number of extra gaps= 0 total=1264 Number of alignments=290 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 1 :SMVPGKVTLQKDAQN 1bfeA 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1bfeA 323 :LGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII T0288 85 :YNKLQYY 1bfeA 394 :PEEYSRF Number of specific fragments extracted= 4 number of extra gaps= 0 total=1268 Number of alignments=291 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 3 :VPGKVTLQKDAQN 1bfeA 310 :EPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1bfeA 323 :LGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII T0288 85 :YNK 1bfeA 394 :PEE Number of specific fragments extracted= 4 number of extra gaps= 0 total=1272 Number of alignments=292 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 1 :SMVPGKVTLQKDAQN 1bfeA 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1bfeA 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1bfeA 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII Number of specific fragments extracted= 3 number of extra gaps= 0 total=1275 Number of alignments=293 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 2 :MVPGKVTLQKDAQN 1bfeA 309 :REPRRIVIHRGSTG T0288 17 :IGISIGGGAQY 1bfeA 323 :LGFNIIGGEDG T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1bfeA 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII Number of specific fragments extracted= 3 number of extra gaps= 0 total=1278 Number of alignments=294 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1bfeA 312 :RRIVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1280 Number of alignments=295 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1bfeA 312 :RRIVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1282 Number of alignments=296 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1284 Number of alignments=297 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0288 89 :QYYK 1bfeA 408 :SSGR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1287 Number of alignments=298 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 8 :TLQKDAQNLIGISIGGGAQ 1bfeA 314 :IVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=1289 Number of alignments=299 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1bfeA 312 :RRIVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1291 Number of alignments=300 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1293 Number of alignments=301 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1bfeA 309 :REPRRIVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1bfeA 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1295 Number of alignments=302 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fc6A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1fc6A/merged-a2m # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 10 :QKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALD 1fc6A 156 :TAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKA T0288 47 :TVAAGDEITGVNGRSIKGKTKVEVAK 1fc6A 192 :GARAGDVIVTVDGTAVKGMSLYDVSD T0288 73 :MIQE 1fc6A 329 :MLVD T0288 77 :VKG 1fc6A 358 :SAT T0288 80 :EVTIHYNKLQY 1fc6A 414 :VTVARYQTPAG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1300 Number of alignments=303 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALD 1fc6A 163 :VGLEITYDGGSGKDVVVLTPAPGGPAEKA T0288 47 :TVAAGDEITGVNGRSIKGKTKVEVAKMIQE 1fc6A 192 :GARAGDVIVTVDGTAVKGMSLYDVSDLLQG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1302 Number of alignments=304 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1fc6A 149 :LAALRRGTAGSVTGVGLEITYDGGSG T0288 29 :PCLYIVQVFDNTPAALDG 1fc6A 175 :KDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0288 78 :KGEVTIHYN 1fc6A 224 :DSQVEVVLH T0288 87 :KLQYYKV 1fc6A 276 :QLGYVRL Number of specific fragments extracted= 5 number of extra gaps= 0 total=1307 Number of alignments=305 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1fc6A 149 :LAALRRGTAGSVTGVGLEITYDGGSG T0288 29 :PCLYIVQVFDNTPAALDG 1fc6A 175 :KDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0288 78 :KGEVTIHYNKLQ 1fc6A 224 :DSQVEVVLHAPG T0288 90 :YYKV 1fc6A 279 :YVRL Number of specific fragments extracted= 5 number of extra gaps= 0 total=1312 Number of alignments=306 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1fc6A 155 :GTAGSVTGVGLEITYDGGSG T0288 29 :PCLYIVQVFDNTPAALDG 1fc6A 175 :KDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0288 78 :KGEVTI 1fc6A 224 :DSQVEV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1316 Number of alignments=307 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1fc6A 154 :RGTAGSVTGVGLEITYDGGSG T0288 29 :PCLYIVQVFDNTPAALDG 1fc6A 175 :KDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0288 78 :KGEVTI 1fc6A 224 :DSQVEV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1320 Number of alignments=308 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 1 :SMVPGKVTLQKDAQN 1fc6A 148 :RLAALRRGTAGSVTG T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 163 :VGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQ 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQ T0288 76 :EVKGEVTIHY 1fc6A 222 :EADSQVEVVL T0288 86 :NKLQYYKV 1fc6A 262 :NVAAAALP Number of specific fragments extracted= 5 number of extra gaps= 0 total=1325 Number of alignments=309 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 3 :VPGKVTLQKDAQN 1fc6A 150 :AALRRGTAGSVTG T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 163 :VGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQ 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQ T0288 76 :EVKGEVTIHYNKLQ 1fc6A 222 :EADSQVEVVLHAPG T0288 90 :YYKV 1fc6A 265 :AAAL Number of specific fragments extracted= 5 number of extra gaps= 0 total=1330 Number of alignments=310 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 6 :KVTLQKDAQN 1fc6A 153 :RRGTAGSVTG T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 163 :VGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQ 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQ T0288 76 :EVKGEVTI 1fc6A 222 :EADSQVEV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1334 Number of alignments=311 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 6 :KVTLQKDAQN 1fc6A 153 :RRGTAGSVTG T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 163 :VGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQ 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQ T0288 76 :EVKGEVTIH 1fc6A 222 :EADSQVEVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1338 Number of alignments=312 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 147 :SRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQE 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0288 77 :VKGEVTIHYNK 1fc6A 223 :ADSQVEVVLHA T0288 88 :LQYYKV 1fc6A 238 :SNTRTL Number of specific fragments extracted= 4 number of extra gaps= 0 total=1342 Number of alignments=313 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 1 :SMVPG 1fc6A 145 :EPSRL T0288 6 :KVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 152 :LRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQE 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0288 77 :VKGEVTIHYNKLQ 1fc6A 223 :ADSQVEVVLHAPG T0288 90 :YYKV 1fc6A 450 :VCRV Number of specific fragments extracted= 5 number of extra gaps= 0 total=1347 Number of alignments=314 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 163 :VGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQE 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0288 77 :VKGEVTI 1fc6A 223 :ADSQVEV Number of specific fragments extracted= 3 number of extra gaps= 0 total=1350 Number of alignments=315 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 11 :KDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 157 :AGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQE 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0288 77 :VKGEVTI 1fc6A 223 :ADSQVEV Number of specific fragments extracted= 3 number of extra gaps= 0 total=1353 Number of alignments=316 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 50 :AGDEITGVNGRSIKGKTKVEVAKMIQ 1fc6A 195 :AGDVIVTVDGTAVKGMSLYDVSDLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=1354 Number of alignments=317 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 47 :TVAAGDEITGVNGRSIKGKTKVEVAKMIQE 1fc6A 192 :GARAGDVIVTVDGTAVKGMSLYDVSDLLQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1355 Number of alignments=318 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCP 1fc6A 89 :WRAVDRAYVDKSFNGQSWFKLRETYLKKE T0288 30 :CLYIVQVFDNTPAALDG 1fc6A 176 :DVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0288 78 :KGEVTIHYNKLQYY 1fc6A 224 :DSQVEVVLHAPGAP T0288 92 :KV 1fc6A 239 :NT Number of specific fragments extracted= 5 number of extra gaps= 0 total=1360 Number of alignments=319 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1fc6A 89 :WRAVDRAYVDKSFNGQSWFKLRETY T0288 30 :CLYIVQVFDNTPAALDG 1fc6A 176 :DVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0288 78 :KGEVTIHYNKLQYY 1fc6A 224 :DSQVEVVLHAPGAP Number of specific fragments extracted= 4 number of extra gaps= 0 total=1364 Number of alignments=320 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1fc6A)V78 T0288 3 :V 1fc6A 79 :T T0288 22 :GGGAQYC 1fc6A 98 :DKSFNGQ T0288 30 :CLYIVQVFDNTPAALDG 1fc6A 176 :DVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMI 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0288 75 :QEVKGEVTIHYNKLQYY 1fc6A 221 :GEADSQVEVVLHAPGAP Number of specific fragments extracted= 5 number of extra gaps= 0 total=1369 Number of alignments=321 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1fc6A)V78 T0288 3 :V 1fc6A 79 :T T0288 7 :VTLQK 1fc6A 141 :TRFLE T0288 12 :DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 158 :GSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMI 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0288 77 :VKGEVTIHYNKLQYY 1fc6A 223 :ADSQVEVVLHAPGAP Number of specific fragments extracted= 5 number of extra gaps= 0 total=1374 Number of alignments=322 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 16 :LIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 162 :GVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQE 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1376 Number of alignments=323 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 14 :QNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 160 :VTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0288 78 :KGEVTIHY 1fc6A 224 :DSQVEVVL Number of specific fragments extracted= 3 number of extra gaps= 0 total=1379 Number of alignments=324 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 12 :DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 158 :GSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMI 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0288 75 :QEVKGEVTIHYNKLQYY 1fc6A 221 :GEADSQVEVVLHAPGAP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1382 Number of alignments=325 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 15 :NLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 161 :TGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMI 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0288 77 :VKGEVTIHYNKLQY 1fc6A 223 :ADSQVEVVLHAPGA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1385 Number of alignments=326 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0288)K92 because last residue in template chain is (1fc6A)F463 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCP 1fc6A 89 :WRAVDRAYVDKSFNGQSWFKLRETYLKKE T0288 30 :CLYIVQVFDNTPAALDG 1fc6A 176 :DVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0288 78 :KGEVTIH 1fc6A 224 :DSQVEVV T0288 85 :YNKLQYY 1fc6A 456 :SDAAPRL Number of specific fragments extracted= 5 number of extra gaps= 0 total=1390 Number of alignments=327 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0288)K92 because last residue in template chain is (1fc6A)F463 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1fc6A 93 :DRAYVDKSFNGQSWFKLRETYL T0288 30 :CLYIVQVFDNTPAALDG 1fc6A 176 :DVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0288 78 :KGEVTIH 1fc6A 224 :DSQVEVV T0288 85 :YNKLQYY 1fc6A 456 :SDAAPRL Number of specific fragments extracted= 5 number of extra gaps= 0 total=1395 Number of alignments=328 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1fc6A)V78 Warning: unaligning (T0288)K92 because last residue in template chain is (1fc6A)F463 T0288 3 :V 1fc6A 79 :T T0288 23 :GGAQYCP 1fc6A 97 :VDKSFNG T0288 30 :CLYIVQVFDNTPAALDG 1fc6A 176 :DVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMI 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0288 75 :QEVKGEVTIH 1fc6A 221 :GEADSQVEVV T0288 85 :YNKLQYY 1fc6A 456 :SDAAPRL Number of specific fragments extracted= 6 number of extra gaps= 0 total=1401 Number of alignments=329 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1fc6A)V78 Warning: unaligning (T0288)K92 because last residue in template chain is (1fc6A)F463 T0288 3 :V 1fc6A 79 :T T0288 7 :VTLQK 1fc6A 141 :TRFLE T0288 12 :DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 158 :GSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMI 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0288 77 :VKGEVTIH 1fc6A 223 :ADSQVEVV T0288 85 :YNKLQYY 1fc6A 456 :SDAAPRL Number of specific fragments extracted= 6 number of extra gaps= 0 total=1407 Number of alignments=330 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 16 :LIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 162 :GVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQE 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1409 Number of alignments=331 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 159 :SVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0288 78 :KGEVTI 1fc6A 224 :DSQVEV Number of specific fragments extracted= 3 number of extra gaps= 0 total=1412 Number of alignments=332 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 12 :DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 158 :GSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMI 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0288 75 :QEVKGEVTIH 1fc6A 221 :GEADSQVEVV T0288 85 :YNKL 1fc6A 237 :PSNT Number of specific fragments extracted= 4 number of extra gaps= 0 total=1416 Number of alignments=333 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 15 :NLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 161 :TGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMI 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0288 77 :VKGEVTIH 1fc6A 223 :ADSQVEVV T0288 85 :YNKLQY 1fc6A 237 :PSNTRT Number of specific fragments extracted= 4 number of extra gaps= 0 total=1420 Number of alignments=334 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1fc6A)V78 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1fc6A 79 :TSEQLLFLEAWRAVDRAYVDKSFN T0288 27 :YCPCLYIVQVFDNTPAALDG 1fc6A 173 :SGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1423 Number of alignments=335 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1fc6A)V78 T0288 3 :VPGKVTLQK 1fc6A 79 :TSEQLLFLE T0288 12 :DAQNLIGISIGGG 1fc6A 97 :VDKSFNGQSWFKL T0288 27 :YCPCLYIVQVFDNTPAALDG 1fc6A 173 :SGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPS Number of specific fragments extracted= 4 number of extra gaps= 0 total=1427 Number of alignments=336 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1fc6A)V78 T0288 3 :V 1fc6A 79 :T T0288 11 :KDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 157 :AGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQE 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0288 77 :VKGEVTIHYNKLQYYKV 1fc6A 223 :ADSQVEVVLHAPGAPSN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1431 Number of alignments=337 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1fc6A)V78 T0288 3 :V 1fc6A 79 :T T0288 5 :GKVT 1fc6A 141 :TRFL T0288 12 :DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 158 :GSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMI 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0288 77 :VKGEVTIHYNKLQYYKV 1fc6A 223 :ADSQVEVVLHAPGAPSN Number of specific fragments extracted= 5 number of extra gaps= 0 total=1436 Number of alignments=338 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 16 :LIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 162 :GVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1438 Number of alignments=339 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 14 :QNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 160 :VTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1440 Number of alignments=340 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 12 :DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 158 :GSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQE 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0288 77 :VKGEVTIHYNKLQYYK 1fc6A 223 :ADSQVEVVLHAPGAPS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1443 Number of alignments=341 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1fc6A 159 :SVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMI 1fc6A 193 :ARAGDVIVTVDGTAVKGMSLYDVSDLL T0288 77 :VKGEVTIHYNKLQY 1fc6A 223 :ADSQVEVVLHAPGA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1446 Number of alignments=342 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1t2mA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0288/1t2mA/merged-a2m or /projects/compbio/experiments/protein-predict/casp7/T0288/1t2mA/merged-a2m.gz for input Trying 1t2mA/merged-a2m Error: Couldn't open file 1t2mA/merged-a2m or 1t2mA/merged-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gm1A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gm1A expands to /projects/compbio/data/pdb/1gm1.pdb.gz 1gm1A:# T0288 read from 1gm1A/merged-a2m # 1gm1A read from 1gm1A/merged-a2m # adding 1gm1A to template set # found chain 1gm1A in template set T0288 17 :IGISIGGGAQYC 1gm1A 25 :LGISVTGGVNTS T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 1gm1A 40 :GGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=1448 Number of alignments=343 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set T0288 15 :NLIGISIGGGAQYC 1gm1A 23 :GSLGISVTGGVNTS T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 1gm1A 40 :GGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1450 Number of alignments=344 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1gm1A)P102 T0288 1 :SMVPGKVTLQKDAQN 1gm1A 10 :PGDTFEVELAKTDGS T0288 17 :IGISIGGGAQYCP 1gm1A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1gm1A 41 :GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 3 number of extra gaps= 0 total=1453 Number of alignments=345 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1gm1A)P102 T0288 1 :SMVPGKVTLQKDAQN 1gm1A 10 :PGDTFEVELAKTDGS T0288 17 :IGISIGGGAQYCP 1gm1A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1gm1A 41 :GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 3 number of extra gaps= 0 total=1456 Number of alignments=346 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1gm1A)P102 T0288 5 :GKVTLQKDAQN 1gm1A 14 :FEVELAKTDGS T0288 17 :IGISIGGGAQYCP 1gm1A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1gm1A 41 :GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 3 number of extra gaps= 0 total=1459 Number of alignments=347 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set T0288 4 :PGKVTLQKDAQN 1gm1A 13 :TFEVELAKTDGS T0288 17 :IGISIGGGAQYCP 1gm1A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1gm1A 41 :GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1462 Number of alignments=348 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1gm1A)P102 T0288 1 :SMVPGKVTLQKDAQN 1gm1A 10 :PGDTFEVELAKTDGS T0288 17 :IGISIGGGAQYCP 1gm1A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1gm1A 41 :GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 3 number of extra gaps= 0 total=1465 Number of alignments=349 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1gm1A)P102 T0288 1 :SMVPGKVTLQKDAQN 1gm1A 10 :PGDTFEVELAKTDGS T0288 17 :IGISIGGGAQYCP 1gm1A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1gm1A 41 :GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 3 number of extra gaps= 0 total=1468 Number of alignments=350 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set T0288 6 :KVTLQKDAQN 1gm1A 15 :EVELAKTDGS T0288 17 :IGISIGGGAQYCP 1gm1A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1gm1A 41 :GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLL Number of specific fragments extracted= 3 number of extra gaps= 0 total=1471 Number of alignments=351 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set T0288 5 :GKVTLQKDAQN 1gm1A 14 :FEVELAKTDGS T0288 17 :IGISIGGGAQYCP 1gm1A 25 :LGISVTGGVNTSV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 1gm1A 41 :GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLE Number of specific fragments extracted= 3 number of extra gaps= 0 total=1474 Number of alignments=352 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1gm1A)P102 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1gm1A 9 :KPGDTFEVELAKTDGSLGISVTGGVN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1gm1A 38 :RHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1476 Number of alignments=353 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1gm1A)P102 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1gm1A 9 :KPGDTFEVELAKTDGSLGISVTGGVN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1gm1A 38 :RHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1478 Number of alignments=354 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1gm1A 10 :PGDTFEVELAKTDGSLGISVTGGVN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1gm1A 38 :RHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1480 Number of alignments=355 # 1gm1A read from 1gm1A/merged-a2m # found chain 1gm1A in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1gm1A 13 :TFEVELAKTDGSLGISVTGGVN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1gm1A 38 :RHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1482 Number of alignments=356 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kefA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kefA expands to /projects/compbio/data/pdb/1kef.pdb.gz 1kefA:# T0288 read from 1kefA/merged-a2m # 1kefA read from 1kefA/merged-a2m # adding 1kefA to template set # found chain 1kefA in template set T0288 17 :IGISIGGGAQYC 1kefA 14 :LGFSIAGGTDNP T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kefA 31 :PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1484 Number of alignments=357 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set T0288 15 :NLIGISIGGGAQY 1kefA 12 :SGLGFSIAGGTDN T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1kefA 31 :PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1486 Number of alignments=358 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1kefA)P93 T0288 1 :SMV 1kefA 1 :EYE T0288 6 :KVTLQKDAQN 1kefA 4 :EITLERGNSG T0288 17 :IGISIGGGAQYCP 1kefA 14 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1kefA 32 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 4 number of extra gaps= 0 total=1490 Number of alignments=359 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1kefA)P93 T0288 1 :SMV 1kefA 1 :EYE T0288 6 :KVTLQKDAQN 1kefA 4 :EITLERGNSG T0288 17 :IGISIGGGAQYCP 1kefA 14 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1kefA 32 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 4 number of extra gaps= 0 total=1494 Number of alignments=360 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kefA)E1 Warning: unaligning (T0288)Y91 because last residue in template chain is (1kefA)P93 T0288 4 :PGKVTLQKDAQN 1kefA 2 :YEEITLERGNSG T0288 17 :IGISIGGGAQYCP 1kefA 14 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1kefA 32 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1497 Number of alignments=361 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set T0288 5 :GKVTLQKDAQN 1kefA 3 :EEITLERGNSG T0288 17 :IGISIGGGAQYCP 1kefA 14 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1kefA 32 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1500 Number of alignments=362 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0288)N86 because last residue in template chain is (1kefA)P93 T0288 1 :SMV 1kefA 1 :EYE T0288 6 :KVTLQKDAQN 1kefA 4 :EITLERGNSG T0288 17 :IGISIGGGAQYCP 1kefA 14 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kefA 32 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY T0288 85 :Y 1kefA 92 :P Number of specific fragments extracted= 5 number of extra gaps= 0 total=1505 Number of alignments=363 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0288)N86 because last residue in template chain is (1kefA)P93 T0288 1 :SMV 1kefA 1 :EYE T0288 6 :KVTLQKDAQN 1kefA 4 :EITLERGNSG T0288 17 :IGISIGGGAQYCP 1kefA 14 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kefA 32 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY T0288 85 :Y 1kefA 92 :P Number of specific fragments extracted= 5 number of extra gaps= 0 total=1510 Number of alignments=364 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set T0288 4 :PGKVTLQKDAQN 1kefA 2 :YEEITLERGNSG T0288 17 :IGISIGGGAQYCP 1kefA 14 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kefA 32 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY Number of specific fragments extracted= 3 number of extra gaps= 0 total=1513 Number of alignments=365 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set T0288 5 :GKVTLQKDAQN 1kefA 3 :EEITLERGNSG T0288 17 :IGISIGGGAQYCP 1kefA 14 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kefA 32 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY Number of specific fragments extracted= 3 number of extra gaps= 0 total=1516 Number of alignments=366 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1kefA)E1 Warning: unaligning (T0288)Y91 because last residue in template chain is (1kefA)P93 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1kefA 2 :YEEITLERGNSGLGFSIAGGTD T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1kefA 29 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1518 Number of alignments=367 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1kefA)E1 Warning: unaligning (T0288)Y91 because last residue in template chain is (1kefA)P93 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1kefA 2 :YEEITLERGNSGLGFSIAGGTD T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1kefA 29 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1520 Number of alignments=368 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1kefA)E1 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1kefA 2 :YEEITLERGNSGLGFSIAGGTD T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1kefA 29 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1522 Number of alignments=369 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1kefA 3 :EEITLERGNSGLGFSIAGGTD T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1kefA 29 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1524 Number of alignments=370 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nf3C/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nf3C expands to /projects/compbio/data/pdb/1nf3.pdb.gz 1nf3C:# T0288 read from 1nf3C/merged-a2m # 1nf3C read from 1nf3C/merged-a2m # adding 1nf3C to template set # found chain 1nf3C in template set Warning: unaligning (T0288)K92 because last residue in template chain is (1nf3C)N253 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1nf3C 153 :ETHRRVRLCKYGTEKPLGFYIRDGSS T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1526 Number of alignments=371 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0288)K92 because last residue in template chain is (1nf3C)N253 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1nf3C 153 :ETHRRVRLCKYGTEKPLGFYIRDGSS T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1528 Number of alignments=372 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 17 :IGISIGGGAQYCP 1nf3C 179 :VRVTPHGLEKVPG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1nf3C 192 :IFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLII Number of specific fragments extracted= 2 number of extra gaps= 0 total=1530 Number of alignments=373 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 14 :QNLIGISIGGGAQ 1nf3C 166 :EKPLGFYIRDGSS T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIIT Number of specific fragments extracted= 2 number of extra gaps= 0 total=1532 Number of alignments=374 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 1 :SMVPGKVTLQK 1nf3C 152 :PETHRRVRLCK T0288 12 :DAQNLIGISIGGGAQ 1nf3C 164 :GTEKPLGFYIRDGSS T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLII T0288 92 :KV 1nf3C 245 :TV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1536 Number of alignments=375 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 1 :SMVPGKVTLQK 1nf3C 152 :PETHRRVRLCK T0288 12 :DAQNLIGISIGGGAQ 1nf3C 164 :GTEKPLGFYIRDGSS T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPAN T0288 91 :YKV 1nf3C 251 :QRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1540 Number of alignments=376 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 7 :VTLQK 1nf3C 158 :VRLCK T0288 12 :DAQNLIGISIGGGAQ 1nf3C 164 :GTEKPLGFYIRDGSS T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLII Number of specific fragments extracted= 3 number of extra gaps= 0 total=1543 Number of alignments=377 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 5 :GKVTLQK 1nf3C 156 :RRVRLCK T0288 12 :DAQNLIGISIGGGAQ 1nf3C 164 :GTEKPLGFYIRDGSS T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLII Number of specific fragments extracted= 3 number of extra gaps= 0 total=1546 Number of alignments=378 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 24 :GAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI 1nf3C 185 :GLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=1547 Number of alignments=379 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 24 :GAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI 1nf3C 185 :GLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMM Number of specific fragments extracted= 1 number of extra gaps= 0 total=1548 Number of alignments=380 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 1 :SMVPGKVTLQK 1nf3C 152 :PETHRRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1551 Number of alignments=381 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 1 :S 1nf3C 152 :P T0288 5 :GKVTLQK 1nf3C 156 :RRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1555 Number of alignments=382 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1nf3C)I131 T0288 3 :VP 1nf3C 132 :VI T0288 5 :GKVTLQK 1nf3C 156 :RRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1559 Number of alignments=383 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1nf3C)I131 T0288 3 :VP 1nf3C 132 :VI T0288 5 :GKVTLQK 1nf3C 156 :RRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1563 Number of alignments=384 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 5 :GKVTLQK 1nf3C 156 :RRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1566 Number of alignments=385 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 5 :GKVTLQK 1nf3C 156 :RRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1569 Number of alignments=386 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0288)K92 because last residue in template chain is (1nf3C)N253 T0288 4 :P 1nf3C 152 :P T0288 5 :GKVTLQK 1nf3C 156 :RRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1573 Number of alignments=387 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0288)K92 because last residue in template chain is (1nf3C)N253 T0288 2 :MVPGKVTLQK 1nf3C 153 :ETHRRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1576 Number of alignments=388 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0288)K92 because last residue in template chain is (1nf3C)N253 T0288 1 :SMVP 1nf3C 149 :DILP T0288 5 :GKVTLQK 1nf3C 156 :RRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1580 Number of alignments=389 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0288)K92 because last residue in template chain is (1nf3C)N253 T0288 1 :SMVP 1nf3C 149 :DILP T0288 5 :GKVTLQK 1nf3C 156 :RRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIIT T0288 86 :NKLQYY 1nf3C 247 :RPANQR Number of specific fragments extracted= 5 number of extra gaps= 0 total=1585 Number of alignments=390 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1nf3C)I131 T0288 3 :VP 1nf3C 132 :VI T0288 5 :GKVTLQK 1nf3C 156 :RRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIIT T0288 86 :NKL 1nf3C 249 :ANQ T0288 92 :KV 1nf3C 252 :RN Number of specific fragments extracted= 6 number of extra gaps= 0 total=1591 Number of alignments=391 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1nf3C)N253 T0288 1 :SMV 1nf3C 131 :IVI T0288 5 :GKVTLQK 1nf3C 156 :RRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIIT T0288 85 :YNKL 1nf3C 249 :ANQR Number of specific fragments extracted= 5 number of extra gaps= 0 total=1596 Number of alignments=392 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 5 :GKVTLQK 1nf3C 156 :RRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIIT Number of specific fragments extracted= 3 number of extra gaps= 0 total=1599 Number of alignments=393 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 5 :GKVTLQK 1nf3C 156 :RRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIIT Number of specific fragments extracted= 3 number of extra gaps= 0 total=1602 Number of alignments=394 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 4 :P 1nf3C 152 :P T0288 5 :GKVTLQK 1nf3C 156 :RRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIIT T0288 85 :YNK 1nf3C 248 :PAN Number of specific fragments extracted= 5 number of extra gaps= 0 total=1607 Number of alignments=395 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 2 :MVPGKVTLQK 1nf3C 153 :ETHRRVRLCK T0288 12 :DAQNLIGISIGGGAQYCP 1nf3C 164 :GTEKPLGFYIRDGSSVRV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nf3C 191 :GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIIT T0288 85 :YNK 1nf3C 249 :ANQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1611 Number of alignments=396 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0288)K6 because first residue in template chain is (1nf3C)I131 Warning: unaligning (T0288)K92 because last residue in template chain is (1nf3C)N253 T0288 7 :VT 1nf3C 132 :VI T0288 9 :LQKDAQNLIGISIGGGAQ 1nf3C 161 :CKYGTEKPLGFYIRDGSS T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1614 Number of alignments=397 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0288)K6 because first residue in template chain is (1nf3C)I131 Warning: unaligning (T0288)K92 because last residue in template chain is (1nf3C)N253 T0288 7 :VT 1nf3C 132 :VI T0288 9 :LQKDAQNLIGISIGGGAQ 1nf3C 161 :CKYGTEKPLGFYIRDGSS T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1617 Number of alignments=398 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0288)K92 because last residue in template chain is (1nf3C)N253 T0288 2 :MVPGKVTLQK 1nf3C 136 :PQDFRPVSSI T0288 12 :DAQNLIGISIGGGAQ 1nf3C 164 :GTEKPLGFYIRDGSS T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1620 Number of alignments=399 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0288)K92 because last residue in template chain is (1nf3C)N253 T0288 2 :MVPGKVTLQK 1nf3C 136 :PQDFRPVSSI T0288 12 :DAQNLIGISIGGGAQ 1nf3C 164 :GTEKPLGFYIRDGSS T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1623 Number of alignments=400 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 8 :TLQKDAQNLIGISIGGGAQ 1nf3C 160 :LCKYGTEKPLGFYIRDGSS T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLII Number of specific fragments extracted= 2 number of extra gaps= 0 total=1625 Number of alignments=401 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0288 8 :TLQKDAQNLIGISIGGGAQ 1nf3C 160 :LCKYGTEKPLGFYIRDGSS T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1627 Number of alignments=402 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0288)K92 because last residue in template chain is (1nf3C)N253 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1nf3C 155 :HRRVRLCKYGTEKPLGFYIRDGSS T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1629 Number of alignments=403 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0288)K92 because last residue in template chain is (1nf3C)N253 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1nf3C 155 :HRRVRLCKYGTEKPLGFYIRDGSS T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1nf3C 188 :KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1631 Number of alignments=404 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wf7A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1wf7A/merged-a2m # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQKD 1wf7A 3 :SGSSGSVSLVGP T0288 15 :NLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 15 :APWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1634 Number of alignments=405 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQKD 1wf7A 3 :SGSSGSVSLVGP T0288 15 :NLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 15 :APWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYK 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1637 Number of alignments=406 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 7 :VTLQKD 1wf7A 9 :VSLVGP T0288 15 :NLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 15 :APWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNM Number of specific fragments extracted= 3 number of extra gaps= 0 total=1640 Number of alignments=407 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 6 :KVTLQKD 1wf7A 8 :SVSLVGP T0288 15 :NLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 15 :APWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMT Number of specific fragments extracted= 3 number of extra gaps= 0 total=1643 Number of alignments=408 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1645 Number of alignments=409 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQ T0288 87 :KLQYYKV 1wf7A 97 :SSGPSSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1648 Number of alignments=410 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNM Number of specific fragments extracted= 2 number of extra gaps= 0 total=1650 Number of alignments=411 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNM Number of specific fragments extracted= 2 number of extra gaps= 0 total=1652 Number of alignments=412 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 18 :GISIGGGAQYCPCLYIVQVFDNTPAA 1wf7A 18 :GFRLQGGKDFNMPLTISSLKDGGKAS T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1wf7A 44 :QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNM Number of specific fragments extracted= 2 number of extra gaps= 0 total=1654 Number of alignments=413 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPA 1wf7A 17 :WGFRLQGGKDFNMPLTISSLKDGGKA T0288 44 :LDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1wf7A 43 :SQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNM Number of specific fragments extracted= 2 number of extra gaps= 0 total=1656 Number of alignments=414 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQ 1wf7A 3 :SGSSGSVSLV T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA T0288 92 :KV 1wf7A 102 :SG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1660 Number of alignments=415 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQ 1wf7A 3 :SGSSGSVSLV T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA T0288 92 :KV 1wf7A 102 :SG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1664 Number of alignments=416 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVP 1wf7A 1 :GSSG T0288 5 :GKVTLQ 1wf7A 7 :GSVSLV T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA T0288 92 :KV 1wf7A 102 :SG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1669 Number of alignments=417 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA T0288 92 :KV 1wf7A 102 :SG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1672 Number of alignments=418 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1674 Number of alignments=419 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1676 Number of alignments=420 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQ 1wf7A 3 :SGSSGSVSLV T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1679 Number of alignments=421 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 2 :MVPGKVTLQ 1wf7A 4 :GSSGSVSLV T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1682 Number of alignments=422 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQ 1wf7A 3 :SGSSGSVSLV T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMT T0288 85 :YNKLQYYKV 1wf7A 95 :PVSSGPSSG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1686 Number of alignments=423 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQ 1wf7A 3 :SGSSGSVSLV T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMT T0288 88 :LQYYKV 1wf7A 98 :SGPSSG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1690 Number of alignments=424 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVP 1wf7A 1 :GSSG T0288 5 :GKVTLQ 1wf7A 7 :GSVSLV T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMT T0288 85 :YNKLQYYKV 1wf7A 95 :PVSSGPSSG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1695 Number of alignments=425 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPG 1wf7A 1 :GSSGS T0288 6 :KVTLQ 1wf7A 8 :SVSLV T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMT T0288 85 :YNKLQYYKV 1wf7A 95 :PVSSGPSSG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1700 Number of alignments=426 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMT Number of specific fragments extracted= 2 number of extra gaps= 0 total=1702 Number of alignments=427 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMT Number of specific fragments extracted= 2 number of extra gaps= 0 total=1704 Number of alignments=428 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQ 1wf7A 3 :SGSSGSVSLV T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMT T0288 90 :YY 1wf7A 92 :KS Number of specific fragments extracted= 4 number of extra gaps= 0 total=1708 Number of alignments=429 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQ 1wf7A 3 :SGSSGSVSLV T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMT Number of specific fragments extracted= 3 number of extra gaps= 0 total=1711 Number of alignments=430 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1713 Number of alignments=431 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1715 Number of alignments=432 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1717 Number of alignments=433 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS T0288 90 :YYKV 1wf7A 100 :PSSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1720 Number of alignments=434 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNM Number of specific fragments extracted= 2 number of extra gaps= 0 total=1722 Number of alignments=435 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 13 :GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1724 Number of alignments=436 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 2 :SSGSSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1726 Number of alignments=437 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0288 7 :VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1wf7A 7 :GSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1wf7A 47 :VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1728 Number of alignments=438 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1um7A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1um7A expands to /projects/compbio/data/pdb/1um7.pdb.gz 1um7A:# T0288 read from 1um7A/merged-a2m # 1um7A read from 1um7A/merged-a2m # adding 1um7A to template set # found chain 1um7A in template set T0288 4 :PGKVTLQKDAQNL 1um7A 16 :PRKIILHKGSTGL T0288 18 :GISIGGGAQ 1um7A 29 :GFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=1731 Number of alignments=439 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0288 4 :PGKVTLQKDAQN 1um7A 16 :PRKIILHKGSTG T0288 17 :IGISIGGGAQ 1um7A 28 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=1734 Number of alignments=440 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0288 1 :SMVPGKVTLQKDAQN 1um7A 13 :AREPRKIILHKGSTG T0288 17 :IGISIGGGAQYC 1um7A 28 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1um7A 40 :GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEE T0288 92 :KV 1um7A 112 :SG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1738 Number of alignments=441 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0288 1 :SMVPGKVTLQKDAQN 1um7A 13 :AREPRKIILHKGSTG T0288 17 :IGISIGGGAQYC 1um7A 28 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1um7A 40 :GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEE T0288 92 :KV 1um7A 112 :SG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1742 Number of alignments=442 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0288 3 :VPGKVTLQKDAQN 1um7A 15 :EPRKIILHKGSTG T0288 17 :IGISIGGGAQYC 1um7A 28 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1um7A 40 :GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE Number of specific fragments extracted= 3 number of extra gaps= 0 total=1745 Number of alignments=443 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0288 3 :VPGKVTLQKDAQN 1um7A 15 :EPRKIILHKGSTG T0288 17 :IGISIGGGAQYC 1um7A 28 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1um7A 40 :GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1748 Number of alignments=444 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0288 1 :SMVPGKVTLQKDAQN 1um7A 13 :AREPRKIILHKGSTG T0288 17 :IGISIGGGAQ 1um7A 28 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIV T0288 85 :YNKLQYYKV 1um7A 105 :FESSGPSSG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1752 Number of alignments=445 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0288 1 :SMVPGKVTLQKDAQN 1um7A 13 :AREPRKIILHKGSTG T0288 17 :IGISIGGGAQ 1um7A 28 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIV T0288 85 :YNKLQYYKV 1um7A 105 :FESSGPSSG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1756 Number of alignments=446 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0288 4 :PGKVTLQKDAQN 1um7A 16 :PRKIILHKGSTG T0288 17 :IGISIGGGAQ 1um7A 28 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIV Number of specific fragments extracted= 3 number of extra gaps= 0 total=1759 Number of alignments=447 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0288 3 :VPGKVTLQKDAQN 1um7A 15 :EPRKIILHKGSTG T0288 17 :IGISIGGGAQ 1um7A 28 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIV T0288 85 :YN 1um7A 99 :PE Number of specific fragments extracted= 4 number of extra gaps= 0 total=1763 Number of alignments=448 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0288 1 :S 1um7A 1 :G T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1um7A 13 :AREPRKIILHKGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1766 Number of alignments=449 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0288 1 :S 1um7A 1 :G T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1um7A 13 :AREPRKIILHKGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1769 Number of alignments=450 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0288 8 :TLQKDAQNLIGISIGGGAQ 1um7A 19 :IILHKGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=1771 Number of alignments=451 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1um7A 17 :RKIILHKGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1um7A 38 :GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1773 Number of alignments=452 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f0aA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2f0aA/merged-a2m # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQKDA 2f0aA 252 :IITVTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1777 Number of alignments=453 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQKDA 2f0aA 252 :IITVTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1781 Number of alignments=454 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0288 7 :VTLQKDA 2f0aA 255 :VTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHY 2f0aA 331 :PGPIVLTV Number of specific fragments extracted= 4 number of extra gaps= 1 total=1785 Number of alignments=455 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0288 5 :GKVTLQKDA 2f0aA 253 :ITVTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYN 2f0aA 331 :PGPIVLTVA Number of specific fragments extracted= 4 number of extra gaps= 1 total=1789 Number of alignments=456 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)K92 because last residue in template chain is (2f0aA)E342 T0288 1 :SMV 2f0aA 251 :MII T0288 6 :KVTLQKDA 2f0aA 254 :TVTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1793 Number of alignments=457 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0288 1 :SMV 2f0aA 251 :MII T0288 6 :KVTLQKDA 2f0aA 254 :TVTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTV Number of specific fragments extracted= 4 number of extra gaps= 1 total=1797 Number of alignments=458 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0288 7 :VTLQKDA 2f0aA 255 :VTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI Number of specific fragments extracted= 3 number of extra gaps= 1 total=1800 Number of alignments=459 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0288 7 :VTLQKDA 2f0aA 255 :VTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGP Number of specific fragments extracted= 3 number of extra gaps= 1 total=1803 Number of alignments=460 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0288 7 :VTLQKDA 2f0aA 255 :VTLNMEK T0288 16 :LIGISIGG 2f0aA 264 :FLGISIVG T0288 24 :GAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 274 :NERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI Number of specific fragments extracted= 3 number of extra gaps= 1 total=1806 Number of alignments=461 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 7 :VTLQKDA 2f0aA 255 :VTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFEN T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f0aA 318 :DDAVRVLRDIVHKPGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1810 Number of alignments=462 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQKDA 2f0aA 252 :IITVTLNMEK T0288 16 :LIGISIGGGAQYCP 2f0aA 264 :FLGISIVGQSNERG T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 280 :GIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1814 Number of alignments=463 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQKDA 2f0aA 252 :IITVTLNMEK T0288 16 :LIGISIGGGAQYCP 2f0aA 264 :FLGISIVGQSNERG T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 280 :GIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1818 Number of alignments=464 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQKDA 2f0aA 252 :IITVTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1822 Number of alignments=465 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQ 2f0aA 252 :IITVTLN T0288 16 :LIGISIGG 2f0aA 264 :FLGISIVG T0288 24 :GAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 274 :NERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1826 Number of alignments=466 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQKDA 2f0aA 252 :IITVTLNMEK T0288 16 :LIGISIGGGAQYCP 2f0aA 264 :FLGISIVGQSNERG T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 280 :GIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1830 Number of alignments=467 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0288 4 :PGKVTLQKDA 2f0aA 252 :IITVTLNMEK T0288 16 :LIGISIGGGAQYCP 2f0aA 264 :FLGISIVGQSNERG T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 280 :GIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1834 Number of alignments=468 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQKDA 2f0aA 252 :IITVTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1838 Number of alignments=469 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQ 2f0aA 252 :IITVTLN T0288 16 :LIGISIGG 2f0aA 264 :FLGISIVG T0288 24 :GAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 274 :NERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1842 Number of alignments=470 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)N86 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQKDA 2f0aA 252 :IITVTLNMEK T0288 16 :LIGISIGGGAQYCP 2f0aA 264 :FLGISIVGQSNERG T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 280 :GIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIH 2f0aA 331 :PGPIVLT T0288 85 :Y 2f0aA 341 :L Number of specific fragments extracted= 5 number of extra gaps= 1 total=1847 Number of alignments=471 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)N86 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQKDA 2f0aA 252 :IITVTLNMEK T0288 16 :LIGISIGGGAQYCP 2f0aA 264 :FLGISIVGQSNERG T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 280 :GIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIH 2f0aA 331 :PGPIVLT T0288 85 :Y 2f0aA 341 :L Number of specific fragments extracted= 5 number of extra gaps= 1 total=1852 Number of alignments=472 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)N86 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQKDA 2f0aA 252 :IITVTLNMEK T0288 16 :LIGISIGGGAQY 2f0aA 264 :FLGISIVGQSNE T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 278 :DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIH 2f0aA 331 :PGPIVLT T0288 85 :Y 2f0aA 341 :L Number of specific fragments extracted= 5 number of extra gaps= 1 total=1857 Number of alignments=473 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)N86 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQ 2f0aA 252 :IITVTLN T0288 16 :LIGISIGG 2f0aA 264 :FLGISIVG T0288 24 :GAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 274 :NERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIH 2f0aA 331 :PGPIVLT T0288 85 :Y 2f0aA 341 :L Number of specific fragments extracted= 5 number of extra gaps= 1 total=1862 Number of alignments=474 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0288 6 :KVTLQKDA 2f0aA 254 :TVTLNMEK T0288 16 :LIGISIGGGAQYCP 2f0aA 264 :FLGISIVGQSNERG T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 280 :GIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIH 2f0aA 331 :PGPIVLT Number of specific fragments extracted= 4 number of extra gaps= 1 total=1866 Number of alignments=475 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0288 5 :GKVTLQKDA 2f0aA 253 :ITVTLNMEK T0288 16 :LIGISIGGGAQYCP 2f0aA 264 :FLGISIVGQSNERG T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 280 :GIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIH 2f0aA 331 :PGPIVLT Number of specific fragments extracted= 4 number of extra gaps= 1 total=1870 Number of alignments=476 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)L88 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQKDA 2f0aA 252 :IITVTLNMEK T0288 16 :LIGISIGGGAQY 2f0aA 264 :FLGISIVGQSNE T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 278 :DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIH 2f0aA 331 :PGPIVLT T0288 87 :K 2f0aA 341 :L Number of specific fragments extracted= 5 number of extra gaps= 1 total=1875 Number of alignments=477 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)N86 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQ 2f0aA 252 :IITVTLN T0288 16 :LIGISIGG 2f0aA 264 :FLGISIVG T0288 24 :GAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 274 :NERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIH 2f0aA 331 :PGPIVLT T0288 85 :Y 2f0aA 341 :L Number of specific fragments extracted= 5 number of extra gaps= 1 total=1880 Number of alignments=478 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQKDA 2f0aA 252 :IITVTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1884 Number of alignments=479 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQKDA 2f0aA 252 :IITVTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1888 Number of alignments=480 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 1 :SMV 2f0aA 251 :MII T0288 6 :KVTLQKDA 2f0aA 254 :TVTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1893 Number of alignments=481 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 1 :SMVPGKV 2f0aA 251 :MIITVTL T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1897 Number of alignments=482 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0288 5 :GKVTLQKDA 2f0aA 253 :ITVTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI Number of specific fragments extracted= 3 number of extra gaps= 1 total=1900 Number of alignments=483 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0288 6 :KVTLQKDA 2f0aA 254 :TVTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKP Number of specific fragments extracted= 3 number of extra gaps= 1 total=1903 Number of alignments=484 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 4 :PGKVTLQKDA 2f0aA 252 :IITVTLNMEK T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1907 Number of alignments=485 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f0aA)E342 T0288 16 :LIGISIGGGAQ 2f0aA 264 :FLGISIVGQSN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 2f0aA 277 :GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI T0288 78 :KGEVTIHYNKL 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 3 number of extra gaps= 1 total=1910 Number of alignments=486 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n7eA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1n7eA expands to /projects/compbio/data/pdb/1n7e.pdb.gz 1n7eA:# T0288 read from 1n7eA/merged-a2m # 1n7eA read from 1n7eA/merged-a2m # adding 1n7eA to template set # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQKDAQN 1n7eA 667 :GAIIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1n7eA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1912 Number of alignments=487 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQKDAQN 1n7eA 667 :GAIIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7eA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK T0288 88 :LQYYKV 1n7eA 756 :AQPASS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1915 Number of alignments=488 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQKDAQN 1n7eA 667 :GAIIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1n7eA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1917 Number of alignments=489 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 4 :PGKVTLQKDAQN 1n7eA 670 :IYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7eA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1919 Number of alignments=490 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7eA)G667 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKI T0288 86 :NKLQYYKV 1n7eA 754 :TDAQPASS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1921 Number of alignments=491 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 2 :M 1n7eA 668 :A T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 1n7eA 669 :IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIK T0288 87 :KLQYYKV 1n7eA 755 :DAQPASS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1924 Number of alignments=492 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 7 :VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1n7eA 672 :TVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1925 Number of alignments=493 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1n7eA 671 :YTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1926 Number of alignments=494 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7eA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=1927 Number of alignments=495 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 15 :NLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7eA 680 :GPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=1928 Number of alignments=496 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQKDAQN 1n7eA 667 :GAIIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1n7eA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDA T0288 92 :KV 1n7eA 760 :SS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1931 Number of alignments=497 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQKDAQN 1n7eA 667 :GAIIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1n7eA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDA T0288 92 :KV 1n7eA 760 :SS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1934 Number of alignments=498 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQK 1n7eA 667 :GAIIYTVELKR T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1n7eA 678 :YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDA T0288 92 :KV 1n7eA 760 :SS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1937 Number of alignments=499 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQKDAQN 1n7eA 667 :GAIIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1n7eA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDA T0288 92 :KV 1n7eA 760 :SS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1940 Number of alignments=500 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQKDAQN 1n7eA 667 :GAIIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1n7eA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD Number of specific fragments extracted= 2 number of extra gaps= 0 total=1942 Number of alignments=501 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 3 :VPGKVTLQKDAQ 1n7eA 669 :IIYTVELKRYGG T0288 16 :LIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1n7eA 681 :PLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=1944 Number of alignments=502 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQK 1n7eA 667 :GAIIYTVELKR T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1n7eA 678 :YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1946 Number of alignments=503 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQKDAQN 1n7eA 667 :GAIIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1n7eA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1948 Number of alignments=504 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQKDAQN 1n7eA 667 :GAIIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7eA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK T0288 85 :YNKLQYYKV 1n7eA 753 :QTDAQPASS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1951 Number of alignments=505 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQKDAQN 1n7eA 667 :GAIIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7eA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK T0288 88 :LQYYKV 1n7eA 756 :AQPASS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1954 Number of alignments=506 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQK 1n7eA 667 :GAIIYTVELKR T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7eA 678 :YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK T0288 85 :YNKLQYYKV 1n7eA 753 :QTDAQPASS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1957 Number of alignments=507 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQKDAQN 1n7eA 667 :GAIIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7eA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK T0288 85 :YNKLQYYKV 1n7eA 753 :QTDAQPASS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1960 Number of alignments=508 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQKDAQN 1n7eA 667 :GAIIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7eA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1962 Number of alignments=509 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 4 :PGKVTLQKDA 1n7eA 670 :IYTVELKRYG T0288 15 :NLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7eA 680 :GPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1964 Number of alignments=510 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQK 1n7eA 667 :GAIIYTVELKR T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7eA 678 :YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK T0288 85 :YNKLQY 1n7eA 754 :TDAQPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1967 Number of alignments=511 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 1 :SMVPGKVTLQKDAQN 1n7eA 667 :GAIIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7eA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK T0288 87 :KL 1n7eA 756 :AQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1970 Number of alignments=512 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1n7eA)G667 T0288 4 :P 1n7eA 668 :A T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1n7eA 670 :IYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1972 Number of alignments=513 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1n7eA)G667 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1n7eA 669 :IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=1973 Number of alignments=514 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7eA)G667 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=1974 Number of alignments=515 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7eA)G667 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=1975 Number of alignments=516 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1n7eA 670 :IYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1976 Number of alignments=517 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1n7eA 670 :IYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=1977 Number of alignments=518 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7eA)G667 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=1978 Number of alignments=519 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQP Number of specific fragments extracted= 1 number of extra gaps= 0 total=1979 Number of alignments=520 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ky9A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ky9A expands to /projects/compbio/data/pdb/1ky9.pdb.gz 1ky9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0288 read from 1ky9A/merged-a2m # 1ky9A read from 1ky9A/merged-a2m # adding 1ky9A to template set # found chain 1ky9A in template set Warning: unaligning (T0288)K6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9A)G79 T0288 1 :SMVPG 1ky9A 46 :FQQFF T0288 10 :QKDAQNLIGISIGGG 1ky9A 82 :QKFMALGSGVIIDAD T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1ky9A 282 :VDAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGL T0288 86 :NKLQYYKV 1ky9A 345 :GKQVNVNL Number of specific fragments extracted= 5 number of extra gaps= 0 total=1984 Number of alignments=521 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0288)K6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9A)G79 T0288 1 :SMVPG 1ky9A 46 :FQQFF T0288 10 :QKDAQNLIGISIGGG 1ky9A 82 :QKFMALGSGVIIDAD T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1ky9A 282 :VDAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGL T0288 86 :NKLQYYKV 1ky9A 345 :GKQVNVNL Number of specific fragments extracted= 5 number of extra gaps= 0 total=1989 Number of alignments=522 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1ky9A)P231 T0288 15 :NLIGISIGGG 1ky9A 220 :ELIGINTAIL T0288 26 :QYCPCLYIVQVFDNTPAALDG 1ky9A 283 :DAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTL Number of specific fragments extracted= 3 number of extra gaps= 1 total=1992 Number of alignments=523 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1ky9A)P231 T0288 17 :IGISIGGG 1ky9A 222 :IGINTAIL T0288 26 :QYCPCLYIVQVFDNTPAALDG 1ky9A 283 :DAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLG Number of specific fragments extracted= 3 number of extra gaps= 1 total=1995 Number of alignments=524 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 32 :YIVQVFDNTPAALDG 1ky9A 289 :FVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSI 1ky9A 304 :IKAGDVITSLNGKPI Number of specific fragments extracted= 2 number of extra gaps= 0 total=1997 Number of alignments=525 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 32 :YIVQVFDNTPAALDG 1ky9A 289 :FVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKG 1ky9A 304 :IKAGDVITSLNGKPISS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1999 Number of alignments=526 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCP 1ky9A 11 :QMPSLAPMLEKVMPSVVSINVEGSTTVNT Number of specific fragments extracted= 1 number of extra gaps= 0 total=2000 Number of alignments=527 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1ky9A)Q11 T0288 3 :VP 1ky9A 12 :MP T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1ky9A 15 :LAPMLEKVMPSVVSINVEGSTTVNT Number of specific fragments extracted= 2 number of extra gaps= 0 total=2002 Number of alignments=528 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1ky9A)Q11 T0288 3 :VPGK 1ky9A 12 :MPSL T0288 16 :LIGISIGGGAQYCP 1ky9A 26 :VVSINVEGSTTVNT T0288 30 :CLYIVQVFDNTPAALDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGK 1ky9A 304 :IKAGDVITSLNGKPISSF T0288 72 :KMIQEV 1ky9A 322 :AALRAQ T0288 78 :KGEVTIHYNKLQYY 1ky9A 334 :GSKLTLGLLRDGKQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=2008 Number of alignments=529 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 1 :SMVP 1ky9A 11 :QMPS T0288 15 :NLIGISIGG 1ky9A 25 :SVVSINVEG T0288 24 :GAQY 1ky9A 39 :TPRM T0288 30 :CLYIVQVFDNTPAALDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGK 1ky9A 304 :IKAGDVITSLNGKPISSF T0288 68 :VEVAKMIQEV 1ky9A 322 :AALRAQVGTM T0288 78 :KGEVTIHYNKLQYY 1ky9A 334 :GSKLTLGLLRDGKQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=2015 Number of alignments=530 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 24 :GAQYCPCLYIVQVFDNTPAALDG 1ky9A 281 :KVDAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2017 Number of alignments=531 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 30 :CLYIVQVFDNTPAALDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRD Number of specific fragments extracted= 2 number of extra gaps= 0 total=2019 Number of alignments=532 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 24 :GAQYCPCLYIVQVFDNTPAALDG 1ky9A 281 :KVDAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGK 1ky9A 304 :IKAGDVITSLNGKPISSF T0288 72 :KMIQEV 1ky9A 322 :AALRAQ T0288 78 :KGEVTIHYNKLQY 1ky9A 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 4 number of extra gaps= 0 total=2023 Number of alignments=533 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 30 :CLYIVQVFDNTPAALDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGK 1ky9A 304 :IKAGDVITSLNGKPISSF T0288 68 :VEVAKMIQEV 1ky9A 322 :AALRAQVGTM T0288 78 :KGEVTIHYNKLQY 1ky9A 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 4 number of extra gaps= 0 total=2027 Number of alignments=534 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCP 1ky9A 11 :QMPSLAPMLEKVMPSVVSINVEGSTTVNT T0288 30 :CLYIVQVFDNTPAALDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2030 Number of alignments=535 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1ky9A)Q11 T0288 3 :VP 1ky9A 12 :MP T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1ky9A 15 :LAPMLEKVMPSVVSINVEGSTTVNT T0288 30 :CLYIVQVFDNTPAALDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2034 Number of alignments=536 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1ky9A)Q11 T0288 3 :VPGK 1ky9A 12 :MPSL T0288 16 :LIGISIGGGAQYCP 1ky9A 26 :VVSINVEGSTTVNT T0288 30 :CLYIVQVFDNTPAALDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGK 1ky9A 304 :IKAGDVITSLNGKPISSF T0288 72 :KMIQEV 1ky9A 322 :AALRAQ T0288 78 :KGEVTIH 1ky9A 334 :GSKLTLG Number of specific fragments extracted= 6 number of extra gaps= 0 total=2040 Number of alignments=537 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 1 :SMVP 1ky9A 11 :QMPS T0288 15 :NLIGISIGG 1ky9A 25 :SVVSINVEG T0288 24 :GAQYC 1ky9A 39 :TPRMP T0288 30 :CLYIVQVFDNTPAALDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGK 1ky9A 304 :IKAGDVITSLNGKPISSF T0288 68 :VEVAKMIQEV 1ky9A 322 :AALRAQVGTM T0288 78 :KGEVTIH 1ky9A 334 :GSKLTLG Number of specific fragments extracted= 7 number of extra gaps= 0 total=2047 Number of alignments=538 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 24 :GAQYCPCLYIVQVFDNTPAALDG 1ky9A 281 :KVDAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVA 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=2049 Number of alignments=539 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 26 :QYCPCLYIVQVFDNTPAALDG 1ky9A 283 :DAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVA 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=2051 Number of alignments=540 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 24 :GAQYCPCLYIVQVFDNTPAALDG 1ky9A 281 :KVDAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGK 1ky9A 304 :IKAGDVITSLNGKPISSF T0288 72 :KMIQEV 1ky9A 322 :AALRAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=2054 Number of alignments=541 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1ky9A)P231 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1ky9A)P231 T0288 10 :QKDAQNLIGISIGGG 1ky9A 215 :VNLNGELIGINTAIL T0288 27 :YCP 1ky9A 232 :DGG T0288 30 :CLYIVQVFDNTPAALDG 1ky9A 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGK 1ky9A 304 :IKAGDVITSLNGKPISSF T0288 68 :VEVAKMIQEV 1ky9A 322 :AALRAQVGTM T0288 78 :KGEVTIH 1ky9A 334 :GSKLTLG T0288 85 :YNKLQ 1ky9A 343 :RDGKQ Number of specific fragments extracted= 7 number of extra gaps= 1 total=2061 Number of alignments=542 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0288)A13 because first residue in template chain is (1ky9A)Q11 T0288 14 :QNLIGISIGGGAQ 1ky9A 12 :MPSLAPMLEKVMP T0288 27 :YCPCLYIVQVFDNTPAALDG 1ky9A 284 :AQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVN Number of specific fragments extracted= 3 number of extra gaps= 0 total=2064 Number of alignments=543 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1ky9A 14 :SLAPMLEKVMPSVVSINVEGSTT T0288 27 :YCPCLYIVQVFDNTPAALDG 1ky9A 284 :AQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYK 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV Number of specific fragments extracted= 3 number of extra gaps= 0 total=2067 Number of alignments=544 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 5 :GKVTL 1ky9A 34 :STTVN T0288 10 :QKDAQNLIGISIGGGAQ 1ky9A 80 :QQQKFMALGSGVIIDAD T0288 27 :YCPCLYIVQVFDNTPAALDG 1ky9A 284 :AQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGK 1ky9A 304 :IKAGDVITSLNGKPISSF T0288 72 :KMIQEVKGEV 1ky9A 322 :AALRAQVGTM T0288 82 :TIHYNKLQYYKV 1ky9A 336 :KLTLGLLRDGKQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=2073 Number of alignments=545 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 16 :LIGISIGGGAQ 1ky9A 87 :LGSGVIIDADK T0288 27 :YCPCLYIVQVFDNTPAALDG 1ky9A 284 :AQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGK 1ky9A 304 :IKAGDVITSLNGKPISSF T0288 68 :VEVAKMIQEVKGEVTIHYNKLQYYKV 1ky9A 322 :AALRAQVGTMPVGSKLTLGLLRDGKQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=2077 Number of alignments=546 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0288)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1ky9A)I267 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE at template residue (1ky9A)I267 T0288 15 :NLI 1ky9A 263 :GEL T0288 20 :SIGGGAQ 1ky9A 268 :MGTELNS T0288 27 :YCPCLYIVQVFDNTPAALDG 1ky9A 284 :AQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVA 1ky9A 304 :IKAGDVITSLNGKPISSFAALRAQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=2081 Number of alignments=547 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 27 :YCPCLYIVQVFDNTPAALDG 1ky9A 284 :AQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTK 1ky9A 304 :IKAGDVITSLNGKPISSFAA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2083 Number of alignments=548 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1ky9A 282 :VDAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGK 1ky9A 304 :IKAGDVITSLNGKPISSF T0288 72 :KMIQEVKGE 1ky9A 322 :AALRAQVGT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2086 Number of alignments=549 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0288 24 :GAQYCPCLYIVQVFDNTPAALDG 1ky9A 281 :KVDAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGK 1ky9A 304 :IKAGDVITSLNGKPISSF T0288 68 :VEVAKMIQEVKGEVTIHYNKLQYY 1ky9A 322 :AALRAQVGTMPVGSKLTLGLLRDG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2089 Number of alignments=550 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ky9B/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ky9B expands to /projects/compbio/data/pdb/1ky9.pdb.gz 1ky9B:# T0288 read from 1ky9B/merged-a2m # 1ky9B read from 1ky9B/merged-a2m # adding 1ky9B to template set # found chain 1ky9B in template set Warning: unaligning (T0288)K6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G79 Warning: unaligning (T0288)D12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)A86 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)A86 Warning: unaligning (T0288)I74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0288)E76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0288 1 :SMVPG 1ky9B 46 :FQQFF T0288 8 :TLQK 1ky9B 80 :QQQK T0288 15 :NLIGISIGGG 1ky9B 87 :LGSGVIIDAD T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1ky9B 282 :VDAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKM 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0288 77 :VKGEVTIHYNK 1ky9B 333 :VGSKLTLGLLR Number of specific fragments extracted= 6 number of extra gaps= 0 total=2095 Number of alignments=551 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)K6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G79 Warning: unaligning (T0288)D12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)A86 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)A86 Warning: unaligning (T0288)I74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0288)E76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0288 1 :SMVPG 1ky9B 46 :FQQFF T0288 8 :TLQK 1ky9B 80 :QQQK T0288 15 :NLIGISIGGG 1ky9B 87 :LGSGVIIDAD T0288 25 :A 1ky9B 282 :V T0288 29 :PCLYIVQVFDNTPAALDG 1ky9B 286 :RGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKM 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0288 77 :VKGEVTIHYNK 1ky9B 333 :VGSKLTLGLLR T0288 93 :V 1ky9B 352 :L Number of specific fragments extracted= 8 number of extra gaps= 0 total=2103 Number of alignments=552 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1ky9B)P231 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1ky9B)P231 Warning: unaligning (T0288)I74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0288)E76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0288 14 :QNLIGISIGGG 1ky9B 219 :GELIGINTAIL T0288 27 :YC 1ky9B 232 :DG T0288 29 :PCLYIVQVFDNTPAALDG 1ky9B 286 :RGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKM 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0288 77 :VKGEVTI 1ky9B 333 :VGSKLTL Number of specific fragments extracted= 5 number of extra gaps= 1 total=2108 Number of alignments=553 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)D12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)A86 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)A86 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1ky9B)P231 Warning: unaligning (T0288)I74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0288)E76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0288 10 :QK 1ky9B 82 :QK T0288 15 :NLIGISIGGG 1ky9B 87 :LGSGVIIDAD T0288 29 :PCLYIVQVFDNTPAALDG 1ky9B 286 :RGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKM 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0288 77 :VKGEVTIH 1ky9B 333 :VGSKLTLG Number of specific fragments extracted= 5 number of extra gaps= 1 total=2113 Number of alignments=554 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set T0288 32 :YIVQVFDNTPAALDG 1ky9B 289 :FVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSI 1ky9B 304 :IKAGDVITSLNGKPI Number of specific fragments extracted= 2 number of extra gaps= 0 total=2115 Number of alignments=555 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set T0288 32 :YIVQVFDNTPAALDG 1ky9B 289 :FVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKG 1ky9B 304 :IKAGDVITSLNGKPISS Number of specific fragments extracted= 2 number of extra gaps= 0 total=2117 Number of alignments=556 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)V3 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0288)V7 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)L19 Warning: unaligning (T0288)L9 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)L19 Warning: unaligning (T0288)D12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P24 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P24 T0288 4 :PGK 1ky9B 14 :SLA T0288 10 :QK 1ky9B 20 :EK T0288 15 :NLIGISIGGGAQYCP 1ky9B 25 :SVVSINVEGSTTVNT T0288 30 :CLYIVQVFDNTPAALDG 1ky9B 384 :GVVVNNVKTGTPAAQIG T0288 48 :VAAGDEITGVNGRSIKG 1ky9B 401 :LKKGDVIIGANQQAVKN T0288 67 :KVEVAKMIQEVKGEVTIHYNKLQYY 1ky9B 418 :IAELRKVLDSKPSVLALNIQRGDST Number of specific fragments extracted= 6 number of extra gaps= 0 total=2123 Number of alignments=557 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)P4 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0288)V7 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)L19 Warning: unaligning (T0288)L9 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)L19 Warning: unaligning (T0288)D12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P24 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P24 T0288 5 :GK 1ky9B 15 :LA T0288 10 :QK 1ky9B 20 :EK T0288 15 :NLIGISIGGGAQYCP 1ky9B 25 :SVVSINVEGSTTVNT T0288 30 :CLYIVQVFDNTPAALDG 1ky9B 384 :GVVVNNVKTGTPAAQIG T0288 48 :VAAGDEITGVNGRSIKG 1ky9B 401 :LKKGDVIIGANQQAVKN T0288 67 :KVEVAKMIQEVKGEVTIHYNKLQYY 1ky9B 418 :IAELRKVLDSKPSVLALNIQRGDST Number of specific fragments extracted= 6 number of extra gaps= 0 total=2129 Number of alignments=558 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)P4 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 T0288 5 :GK 1ky9B 14 :SL T0288 16 :LIGISIGGGAQYCP 1ky9B 26 :VVSINVEGSTTVNT T0288 30 :CLYIVQVFDNTPAALDG 1ky9B 384 :GVVVNNVKTGTPAAQIG T0288 48 :VAAGDEITGVNGRSIKG 1ky9B 401 :LKKGDVIIGANQQAVKN T0288 67 :KVEVAKMIQEVKGEVTIHYNKLQYY 1ky9B 418 :IAELRKVLDSKPSVLALNIQRGDST Number of specific fragments extracted= 5 number of extra gaps= 0 total=2134 Number of alignments=559 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)V3 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P43 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P43 T0288 4 :P 1ky9B 14 :S T0288 15 :NLIGISIGG 1ky9B 25 :SVVSINVEG T0288 24 :GA 1ky9B 39 :TP T0288 29 :P 1ky9B 44 :R T0288 30 :CLYIVQVFDNTPAALDG 1ky9B 384 :GVVVNNVKTGTPAAQIG T0288 48 :VAAGDEITGVNGRSIKG 1ky9B 401 :LKKGDVIIGANQQAVKN T0288 67 :KVEVAKMIQEVKGEVTIHYNKLQYY 1ky9B 418 :IAELRKVLDSKPSVLALNIQRGDST Number of specific fragments extracted= 7 number of extra gaps= 0 total=2141 Number of alignments=560 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)K281 Warning: unaligning (T0288)I74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0288)E76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1ky9B 282 :VDAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKM 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0288 77 :VKGEVTIHYNKLQ 1ky9B 333 :VGSKLTLGLLRDG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2144 Number of alignments=561 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)I74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0288)E76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0288 30 :CLYIVQVFDNTPAALDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKM 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0288 77 :VKGEVTIHYNKL 1ky9B 333 :VGSKLTLGLLRD Number of specific fragments extracted= 3 number of extra gaps= 0 total=2147 Number of alignments=562 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)K281 T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1ky9B 282 :VDAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKG 1ky9B 304 :IKAGDVITSLNGKPISS T0288 71 :AKMIQEV 1ky9B 321 :FAALRAQ T0288 78 :KGEVTIHYNKLQY 1ky9B 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 4 number of extra gaps= 0 total=2151 Number of alignments=563 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)E76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0288 30 :CLYIVQVFDNTPAALDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKG 1ky9B 304 :IKAGDVITSLNGKPISS T0288 67 :KVEVAKMIQ 1ky9B 321 :FAALRAQVG T0288 78 :KGEVTIHYNKLQY 1ky9B 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 4 number of extra gaps= 0 total=2155 Number of alignments=564 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)V3 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0288)V7 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)L19 Warning: unaligning (T0288)L9 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)L19 Warning: unaligning (T0288)D12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P24 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P24 Warning: unaligning (T0288)I74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0288)E76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 Warning: unaligning (T0288)Y91 because last residue in template chain is (1ky9B)L446 T0288 4 :PGK 1ky9B 14 :SLA T0288 10 :QK 1ky9B 20 :EK T0288 15 :NLIGISIGGGAQYCP 1ky9B 25 :SVVSINVEGSTTVNT T0288 30 :CLYIVQVFDNTPAALDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKM 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0288 77 :VKGEVTIH 1ky9B 333 :VGSKLTLG T0288 85 :YNKLQY 1ky9B 440 :DSTIYL Number of specific fragments extracted= 7 number of extra gaps= 0 total=2162 Number of alignments=565 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)P4 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0288)V7 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)L19 Warning: unaligning (T0288)L9 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)L19 Warning: unaligning (T0288)D12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P24 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P24 Warning: unaligning (T0288)I74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0288)E76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 Warning: unaligning (T0288)Y91 because last residue in template chain is (1ky9B)L446 T0288 5 :GK 1ky9B 15 :LA T0288 10 :QK 1ky9B 20 :EK T0288 15 :NLIGISIGGGAQYCP 1ky9B 25 :SVVSINVEGSTTVNT T0288 30 :CLYIVQVFDNTPAALDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKM 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0288 77 :VKGEVTIH 1ky9B 333 :VGSKLTLG T0288 85 :YNKLQY 1ky9B 440 :DSTIYL Number of specific fragments extracted= 7 number of extra gaps= 0 total=2169 Number of alignments=566 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)P4 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0288)Y91 because last residue in template chain is (1ky9B)L446 T0288 5 :GK 1ky9B 14 :SL T0288 16 :LIGISIGGGAQYCP 1ky9B 26 :VVSINVEGSTTVNT T0288 30 :CLYIVQVFDNTPAALDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKG 1ky9B 304 :IKAGDVITSLNGKPISS T0288 71 :AKMIQEV 1ky9B 321 :FAALRAQ T0288 78 :KGEVTIH 1ky9B 334 :GSKLTLG T0288 85 :YNKLQY 1ky9B 440 :DSTIYL Number of specific fragments extracted= 7 number of extra gaps= 0 total=2176 Number of alignments=567 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)P4 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P24 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P43 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P43 Warning: unaligning (T0288)E76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0288)Y91 because last residue in template chain is (1ky9B)L446 T0288 5 :G 1ky9B 14 :S T0288 15 :NLIGISIGG 1ky9B 25 :SVVSINVEG T0288 24 :GA 1ky9B 39 :TP T0288 29 :P 1ky9B 44 :R T0288 30 :CLYIVQVFDNTPAALDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKG 1ky9B 304 :IKAGDVITSLNGKPISS T0288 67 :KVEVAKMIQ 1ky9B 321 :FAALRAQVG T0288 78 :KGEVTIH 1ky9B 334 :GSKLTLG T0288 85 :YNKLQY 1ky9B 440 :DSTIYL Number of specific fragments extracted= 9 number of extra gaps= 0 total=2185 Number of alignments=568 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)K281 T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1ky9B 282 :VDAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVA 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=2187 Number of alignments=569 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set T0288 26 :QYCPCLYIVQVFDNTPAALDG 1ky9B 283 :DAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVA 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=2189 Number of alignments=570 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)K281 T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1ky9B 282 :VDAQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKG 1ky9B 304 :IKAGDVITSLNGKPISS T0288 71 :AKMIQEV 1ky9B 321 :FAALRAQ T0288 78 :KGEVTIH 1ky9B 334 :GSKLTLG T0288 85 :YNK 1ky9B 343 :RDG Number of specific fragments extracted= 5 number of extra gaps= 0 total=2194 Number of alignments=571 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1ky9B)P231 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1ky9B)P231 Warning: unaligning (T0288)E76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0288 11 :KDAQNLIGISIGGG 1ky9B 216 :NLNGELIGINTAIL T0288 27 :YCP 1ky9B 232 :DGG T0288 30 :CLYIVQVFDNTPAALDG 1ky9B 287 :GAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKG 1ky9B 304 :IKAGDVITSLNGKPISS T0288 67 :KVEVAKMIQ 1ky9B 321 :FAALRAQVG T0288 78 :KGEVTIH 1ky9B 334 :GSKLTLG T0288 85 :YNKLQYY 1ky9B 342 :LRDGKQV Number of specific fragments extracted= 7 number of extra gaps= 1 total=2201 Number of alignments=572 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)N15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0288)I19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)L19 Warning: unaligning (T0288)I21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)L19 Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P24 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P24 Warning: unaligning (T0288)I74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0288)E76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0288 16 :LIG 1ky9B 14 :SLA T0288 22 :GG 1ky9B 20 :EK T0288 27 :YCPCLYIVQVFDNTPAALDG 1ky9B 284 :AQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKM 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0288 77 :VKGEVTIHYNKLQYYKV 1ky9B 333 :VGSKLTLGLLRDGKQVN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2206 Number of alignments=573 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)V7 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)L19 Warning: unaligning (T0288)L9 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)L19 Warning: unaligning (T0288)D12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P24 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P24 Warning: unaligning (T0288)I74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0288)E76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0288 4 :PGK 1ky9B 14 :SLA T0288 10 :QK 1ky9B 20 :EK T0288 15 :NLIGISIGGGAQ 1ky9B 25 :SVVSINVEGSTT T0288 27 :YCPCLYIVQVFDNTPAALDG 1ky9B 284 :AQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKM 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQVG T0288 77 :VKGEVTIHYNKLQYYK 1ky9B 333 :VGSKLTLGLLRDGKQV Number of specific fragments extracted= 6 number of extra gaps= 0 total=2212 Number of alignments=574 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)A86 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)A86 T0288 5 :GKVT 1ky9B 34 :STTV T0288 10 :QKDA 1ky9B 80 :QQQK T0288 17 :IGISIGGGAQ 1ky9B 87 :LGSGVIIDAD T0288 27 :YCPCLYIVQVFDNTPAALDG 1ky9B 284 :AQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKG 1ky9B 304 :IKAGDVITSLNGKPISS T0288 67 :K 1ky9B 321 :F T0288 72 :KMIQE 1ky9B 322 :AALRA T0288 77 :VKGEVTIHYNK 1ky9B 333 :VGSKLTLGLLR T0288 90 :YYKV 1ky9B 344 :DGKQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=2221 Number of alignments=575 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)E76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0288 2 :MVPGKVTLQKDAQN 1ky9B 26 :VVSINVEGSTTVNT T0288 16 :LIGISIGGGAQ 1ky9B 87 :LGSGVIIDADK T0288 27 :YCPCLYIVQVFDNTPAALDG 1ky9B 284 :AQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKG 1ky9B 304 :IKAGDVITSLNGKPISS T0288 67 :KVEVAKMIQ 1ky9B 321 :FAALRAQVG T0288 77 :VKGEVTIHYNKLQYY 1ky9B 333 :VGSKLTLGLLRDGKQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=2227 Number of alignments=576 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)I19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G269 Warning: unaligning (T0288)I21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)G269 T0288 15 :NLIG 1ky9B 263 :GELG T0288 22 :GGGAQ 1ky9B 270 :TELNS T0288 27 :YCPCLYIVQVFDNTPAALDG 1ky9B 284 :AQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVA 1ky9B 304 :IKAGDVITSLNGKPISSFAALRAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=2231 Number of alignments=577 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set T0288 27 :YCPCLYIVQVFDNTPAALDG 1ky9B 284 :AQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKGKTK 1ky9B 304 :IKAGDVITSLNGKPISSFAA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2233 Number of alignments=578 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)I19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G269 Warning: unaligning (T0288)I21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)G269 T0288 16 :LIG 1ky9B 264 :ELG T0288 22 :GGGAQ 1ky9B 270 :TELNS T0288 27 :YCPCLYIVQVFDNTPAALDG 1ky9B 284 :AQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKG 1ky9B 304 :IKAGDVITSLNGKPISS T0288 71 :AKMIQ 1ky9B 321 :FAALR Number of specific fragments extracted= 5 number of extra gaps= 0 total=2238 Number of alignments=579 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0288)I19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G269 Warning: unaligning (T0288)I21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)G269 T0288 16 :LIG 1ky9B 264 :ELG T0288 22 :GGGAQ 1ky9B 270 :TELNS T0288 27 :YCPCLYIVQVFDNTPAALDG 1ky9B 284 :AQRGAFVSQVLPNSSAAKAG T0288 48 :VAAGDEITGVNGRSIKG 1ky9B 304 :IKAGDVITSLNGKPISS T0288 67 :KVEVAKM 1ky9B 321 :FAALRAQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=2243 Number of alignments=580 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zokA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1zokA/merged-a2m # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1zokA 253 :IFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLY Number of specific fragments extracted= 1 number of extra gaps= 0 total=2244 Number of alignments=581 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set T0288 15 :NLIGISIGGGAQYC 1zokA 232 :SGLGFSIAGGTDNP T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1zokA 251 :SSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2246 Number of alignments=582 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1zokA)F313 T0288 1 :SMV 1zokA 221 :EYE T0288 6 :KVTLQKDAQN 1zokA 224 :EITLERGNSG T0288 17 :IGISIGGGAQYCP 1zokA 234 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1zokA 252 :SIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2250 Number of alignments=583 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1zokA)F313 T0288 1 :SMV 1zokA 221 :EYE T0288 6 :KVTLQKDAQN 1zokA 224 :EITLERGNSG T0288 17 :IGISIGGGAQYCP 1zokA 234 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1zokA 252 :SIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2254 Number of alignments=584 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1zokA)E221 Warning: unaligning (T0288)Y91 because last residue in template chain is (1zokA)F313 T0288 4 :PGKVTLQKDAQN 1zokA 222 :YEEITLERGNSG T0288 17 :IGISIGGGAQYCP 1zokA 234 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1zokA 252 :SIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2257 Number of alignments=585 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set T0288 5 :GKVTLQKDAQN 1zokA 223 :EEITLERGNSG T0288 17 :IGISIGGGAQYCP 1zokA 234 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1zokA 252 :SIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRR Number of specific fragments extracted= 3 number of extra gaps= 0 total=2260 Number of alignments=586 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1zokA)F313 T0288 1 :SMV 1zokA 221 :EYE T0288 6 :KVTLQKDAQN 1zokA 224 :EITLERGNSG T0288 17 :IGISIGGGAQYCP 1zokA 234 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1zokA 252 :SIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2264 Number of alignments=587 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1zokA)F313 T0288 1 :SMV 1zokA 221 :EYE T0288 6 :KVTLQKDAQN 1zokA 224 :EITLERGNSG T0288 17 :IGISIGGGAQYCP 1zokA 234 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1zokA 252 :SIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2268 Number of alignments=588 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set T0288 4 :PGKVTLQKDAQN 1zokA 222 :YEEITLERGNSG T0288 17 :IGISIGGGAQYCP 1zokA 234 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1zokA 252 :SIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLY Number of specific fragments extracted= 3 number of extra gaps= 0 total=2271 Number of alignments=589 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set T0288 5 :GKVTLQKDAQN 1zokA 223 :EEITLERGNSG T0288 17 :IGISIGGGAQYCP 1zokA 234 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1zokA 252 :SIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYV Number of specific fragments extracted= 3 number of extra gaps= 0 total=2274 Number of alignments=590 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1zokA)E221 Warning: unaligning (T0288)Y91 because last residue in template chain is (1zokA)F313 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1zokA 222 :YEEITLERGNSGLGFSIAGGTD T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1zokA 249 :DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2276 Number of alignments=591 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1zokA)E221 Warning: unaligning (T0288)Y91 because last residue in template chain is (1zokA)F313 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1zokA 222 :YEEITLERGNSGLGFSIAGGTD T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1zokA 249 :DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2278 Number of alignments=592 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1zokA)E221 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1zokA 222 :YEEITLERGNSGLGFSIAGGTD T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1zokA 249 :DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2280 Number of alignments=593 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1zokA 223 :EEITLERGNSGLGFSIAGGTD T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1zokA 249 :DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYV Number of specific fragments extracted= 2 number of extra gaps= 0 total=2282 Number of alignments=594 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xz9A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0288/1xz9A/merged-a2m or /projects/compbio/experiments/protein-predict/casp7/T0288/1xz9A/merged-a2m.gz for input Trying 1xz9A/merged-a2m Error: Couldn't open file 1xz9A/merged-a2m or 1xz9A/merged-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1mfgA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1mfgA/merged-a2m # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)Y91 because last residue in template chain is (1mfgA)S1371 T0288 1 :SMVPGKVTLQKDA 1mfgA 1277 :GSMEIRVRVEKDP T0288 16 :LIGISIGGGAQ 1mfgA 1290 :ELGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2288 Number of alignments=595 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)Y91 because last residue in template chain is (1mfgA)S1371 T0288 1 :SMVPGKVTLQKDA 1mfgA 1277 :GSMEIRVRVEKDP T0288 16 :LIGISIGGGAQ 1mfgA 1290 :ELGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2294 Number of alignments=596 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 T0288 7 :VTLQKDAQNLIGISIGGGAQ 1mfgA 1281 :IRVRVEKDPELGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE Number of specific fragments extracted= 4 number of extra gaps= 2 total=2298 Number of alignments=597 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0288 7 :VTLQKDAQNLIGISIGGGAQ 1mfgA 1281 :IRVRVEKDPELGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE Number of specific fragments extracted= 4 number of extra gaps= 2 total=2302 Number of alignments=598 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)Y91 because last residue in template chain is (1mfgA)S1371 T0288 1 :SMVPGKVTLQKDAQ 1mfgA 1277 :GSMEIRVRVEKDPE T0288 17 :IGISIGGGAQ 1mfgA 1291 :LGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2308 Number of alignments=599 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)Y91 because last residue in template chain is (1mfgA)S1371 T0288 1 :SMVPGKVTLQKDAQ 1mfgA 1277 :GSMEIRVRVEKDPE T0288 17 :IGISIGGGAQ 1mfgA 1291 :LGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2314 Number of alignments=600 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 T0288 7 :VTLQKDAQ 1mfgA 1283 :VRVEKDPE T0288 17 :IGISIGGGAQ 1mfgA 1291 :LGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE Number of specific fragments extracted= 5 number of extra gaps= 2 total=2319 Number of alignments=601 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0288 5 :GKVTLQKDAQ 1mfgA 1281 :IRVRVEKDPE T0288 17 :IGISIGGGAQ 1mfgA 1291 :LGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE Number of specific fragments extracted= 5 number of extra gaps= 2 total=2324 Number of alignments=602 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0288 1 :SMV 1mfgA 1277 :GSM T0288 6 :KVTLQKDAQNLIGISIGGGAQY 1mfgA 1280 :EIRVRVEKDPELGFSISGGVGG T0288 28 :CPCLYIVQVFDNTPA 1mfgA 1310 :DDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNK 1mfgA 1365 :IVR T0288 90 :YYKV 1mfgA 1368 :EVSS Number of specific fragments extracted= 7 number of extra gaps= 2 total=2331 Number of alignments=603 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0288 1 :SMV 1mfgA 1277 :GSM T0288 6 :KVTLQKDAQNLIGISIGGGAQY 1mfgA 1280 :EIRVRVEKDPELGFSISGGVGG T0288 28 :CPCLYIVQVFDNTPA 1mfgA 1310 :DDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKL 1mfgA 1365 :IVRE T0288 91 :YKV 1mfgA 1369 :VSS Number of specific fragments extracted= 7 number of extra gaps= 2 total=2338 Number of alignments=604 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 T0288 7 :VTLQKDAQNLIGISIGGGAQY 1mfgA 1281 :IRVRVEKDPELGFSISGGVGG T0288 28 :CPCLYIVQVFDNTPA 1mfgA 1310 :DDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE Number of specific fragments extracted= 4 number of extra gaps= 2 total=2342 Number of alignments=605 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 T0288 7 :VTLQKDAQNLIGISIGGGAQY 1mfgA 1281 :IRVRVEKDPELGFSISGGVGG T0288 28 :CPCLYIVQVFDNTPA 1mfgA 1310 :DDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE Number of specific fragments extracted= 4 number of extra gaps= 2 total=2346 Number of alignments=606 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set T0288 4 :PGKVTLQKDAQNLIGISIG 1mfgA 1330 :PGDKIIQANGYSFINIEHG Number of specific fragments extracted= 1 number of extra gaps= 0 total=2347 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set T0288 8 :TLQKDAQNLIGISIGGGAQYCP 1mfgA 1284 :RVEKDPELGFSISGGVGGRGNP T0288 30 :CLYIVQVFDNTPAA 1mfgA 1312 :GIFVTRVQPEGPAS T0288 46 :GTVAAGDEITGVNGRSIKG 1mfgA 1326 :KLLQPGDKIIQANGYSFIN Number of specific fragments extracted= 3 number of extra gaps= 0 total=2350 Number of alignments=607 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)Y91 because last residue in template chain is (1mfgA)S1371 T0288 1 :SMVPGKVTLQKDAQ 1mfgA 1277 :GSMEIRVRVEKDPE T0288 17 :IGISIGGGAQYCP 1mfgA 1291 :LGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPA 1mfgA 1312 :GIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2356 Number of alignments=608 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)Y91 because last residue in template chain is (1mfgA)S1371 T0288 1 :SMVPGKVTLQKDAQ 1mfgA 1277 :GSMEIRVRVEKDPE T0288 17 :IGISIGGGAQYCP 1mfgA 1291 :LGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPAA 1mfgA 1312 :GIFVTRVQPEGPAS T0288 46 :GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2362 Number of alignments=609 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)Y91 because last residue in template chain is (1mfgA)S1371 T0288 1 :SMVPGKVTLQKDAQ 1mfgA 1277 :GSMEIRVRVEKDPE T0288 17 :IGISIGGGAQYCP 1mfgA 1291 :LGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPA 1mfgA 1312 :GIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2368 Number of alignments=610 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0288 1 :SMVPGKVTLQKDAQ 1mfgA 1277 :GSMEIRVRVEKDPE T0288 17 :IGISIGGGAQYCP 1mfgA 1291 :LGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPA 1mfgA 1312 :GIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2374 Number of alignments=611 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1mfgA 1279 :MEIRVRVEKDPELGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPA 1mfgA 1312 :GIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNK 1mfgA 1365 :IVR Number of specific fragments extracted= 5 number of extra gaps= 2 total=2379 Number of alignments=612 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0288 5 :GKVTLQK 1mfgA 1281 :IRVRVEK T0288 14 :QNLIGISIGGGAQYCP 1mfgA 1288 :DPELGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPAA 1mfgA 1312 :GIFVTRVQPEGPAS T0288 46 :GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKL 1mfgA 1365 :IVRE Number of specific fragments extracted= 6 number of extra gaps= 2 total=2385 Number of alignments=613 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)Y91 because last residue in template chain is (1mfgA)S1371 T0288 1 :SMVPGKVTLQKDAQ 1mfgA 1277 :GSMEIRVRVEKDPE T0288 17 :IGISIGGGAQYCP 1mfgA 1291 :LGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPA 1mfgA 1312 :GIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2391 Number of alignments=614 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)Y91 because last residue in template chain is (1mfgA)S1371 T0288 1 :SMVPGKVTLQKDAQ 1mfgA 1277 :GSMEIRVRVEKDPE T0288 17 :IGISIGGGAQYCP 1mfgA 1291 :LGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPA 1mfgA 1312 :GIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2397 Number of alignments=615 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)Q89 because last residue in template chain is (1mfgA)S1371 T0288 1 :SMVPGKVTLQKDAQ 1mfgA 1277 :GSMEIRVRVEKDPE T0288 17 :IGISIGGGAQYCP 1mfgA 1291 :LGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPA 1mfgA 1312 :GIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKL 1mfgA 1367 :REVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2403 Number of alignments=616 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)Q89 because last residue in template chain is (1mfgA)S1371 T0288 1 :SMVPGKVTLQKDAQ 1mfgA 1277 :GSMEIRVRVEKDPE T0288 17 :IGISIGGGAQYCP 1mfgA 1291 :LGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPAA 1mfgA 1312 :GIFVTRVQPEGPAS T0288 46 :GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 87 :KL 1mfgA 1369 :VS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2409 Number of alignments=617 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0288 1 :SMVPGKVTLQKDAQ 1mfgA 1277 :GSMEIRVRVEKDPE T0288 17 :IGISIGGGAQYCP 1mfgA 1291 :LGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPA 1mfgA 1312 :GIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 86 :NKLQ 1mfgA 1367 :REVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2415 Number of alignments=618 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)K87 because last residue in template chain is (1mfgA)S1371 T0288 1 :SMVPGKVTLQKDAQ 1mfgA 1277 :GSMEIRVRVEKDPE T0288 17 :IGISIGGGAQYCP 1mfgA 1291 :LGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPA 1mfgA 1312 :GIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YN 1mfgA 1369 :VS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2421 Number of alignments=619 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1mfgA 1279 :MEIRVRVEKDPELGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPA 1mfgA 1312 :GIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE Number of specific fragments extracted= 4 number of extra gaps= 2 total=2425 Number of alignments=620 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0288 7 :VTLQKDAQNLIGISIGGGAQYCP 1mfgA 1281 :IRVRVEKDPELGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPAA 1mfgA 1312 :GIFVTRVQPEGPAS T0288 46 :GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE Number of specific fragments extracted= 4 number of extra gaps= 2 total=2429 Number of alignments=621 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0288 1 :SMVPGKVTLQKDAQ 1mfgA 1277 :GSMEIRVRVEKDPE T0288 17 :IGISIGGGAQYCP 1mfgA 1291 :LGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPA 1mfgA 1312 :GIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 86 :NKL 1mfgA 1367 :REV Number of specific fragments extracted= 6 number of extra gaps= 2 total=2435 Number of alignments=622 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0288 1 :SMVPGKVTLQKDAQ 1mfgA 1277 :GSMEIRVRVEKDPE T0288 17 :IGISIGGGAQYCP 1mfgA 1291 :LGFSISGGVGGRG T0288 30 :CLYIVQVFDNTPA 1mfgA 1312 :GIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :Y 1mfgA 1369 :V Number of specific fragments extracted= 6 number of extra gaps= 2 total=2441 Number of alignments=623 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)Y91 because last residue in template chain is (1mfgA)S1371 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1mfgA 1278 :SMEIRVRVEKDPELGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 5 number of extra gaps= 2 total=2446 Number of alignments=624 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)Y91 because last residue in template chain is (1mfgA)S1371 T0288 1 :SMV 1mfgA 1277 :GSM T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1mfgA 1280 :EIRVRVEKDPELGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPAA 1mfgA 1309 :DDDGIFVTRVQPEGPAS T0288 46 :GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2452 Number of alignments=625 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)Y91 because last residue in template chain is (1mfgA)S1371 T0288 1 :SMVPGKV 1mfgA 1277 :GSMEIRV T0288 10 :QKDAQNLIGISIGGGAQ 1mfgA 1284 :RVEKDPELGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2458 Number of alignments=626 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0288)Y91 because last residue in template chain is (1mfgA)S1371 T0288 1 :SMVPGK 1mfgA 1277 :GSMEIR T0288 9 :LQKDAQNLIGISIGGGAQ 1mfgA 1283 :VRVEKDPELGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2464 Number of alignments=627 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1mfgA 1279 :MEIRVRVEKDPELGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE Number of specific fragments extracted= 4 number of extra gaps= 2 total=2468 Number of alignments=628 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0288 8 :TLQKDAQNLIGISIGGGAQ 1mfgA 1282 :RVRVEKDPELGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPAA 1mfgA 1309 :DDDGIFVTRVQPEGPAS T0288 46 :GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1326 :KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :Y 1mfgA 1365 :I Number of specific fragments extracted= 5 number of extra gaps= 2 total=2473 Number of alignments=629 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1mfgA 1278 :SMEIRVRVEKDPELGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 5 number of extra gaps= 2 total=2478 Number of alignments=630 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0288)G79 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0288)E80 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0288)I83 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0288)H84 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1mfgA 1278 :SMEIRVRVEKDPELGFSISGGVG T0288 27 :YCPCLYIVQVFDNTPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0288 45 :DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0288 81 :VT 1mfgA 1361 :VE T0288 85 :YNKLQY 1mfgA 1365 :IVREVS Number of specific fragments extracted= 5 number of extra gaps= 2 total=2483 Number of alignments=631 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b8qA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1b8qA expands to /projects/compbio/data/pdb/1b8q.pdb.gz 1b8qA:# T0288 read from 1b8qA/merged-a2m # 1b8qA read from 1b8qA/merged-a2m # adding 1b8qA to template set # found chain 1b8qA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1b8qA 6 :EPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYYKV 1b8qA 84 :ETHVVLILRGPEGFTT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2486 Number of alignments=632 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1b8qA 6 :EPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQY 1b8qA 84 :ETHVVLILRGPEG T0288 91 :YKV 1b8qA 100 :HLE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2490 Number of alignments=633 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1b8qA 12 :VRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1b8qA 84 :ETHVVLI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2493 Number of alignments=634 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1b8qA 11 :SVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1b8qA 84 :ETHVVLI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2496 Number of alignments=635 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGG 1b8qA 8 :NVISVRLFKRKVGGLGFLVKER T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1b8qA 30 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0288 79 :GEVTIHYNKLQ 1b8qA 85 :THVVLILRGPE T0288 90 :YYKV 1b8qA 116 :VTQP Number of specific fragments extracted= 4 number of extra gaps= 0 total=2500 Number of alignments=636 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 6 :KVTLQKDAQNLIGISIGGG 1b8qA 11 :SVRLFKRKVGGLGFLVKER T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1b8qA 30 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0288 79 :GEVTIHY 1b8qA 85 :THVVLIL Number of specific fragments extracted= 3 number of extra gaps= 0 total=2503 Number of alignments=637 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 1b8qA 33 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=2504 Number of alignments=638 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 1b8qA 33 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=2505 Number of alignments=639 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYC 1b8qA 6 :EPNVISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 34 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1b8qA 84 :ETHVVLILRGPEGF T0288 92 :KV 1b8qA 126 :AV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2509 Number of alignments=640 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1b8qA 6 :EPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1b8qA 84 :ETHVVLILRGPEGF T0288 92 :KV 1b8qA 126 :AV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2513 Number of alignments=641 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 1 :SMVP 1b8qA 1 :GSHM T0288 5 :GKVTLQKDAQNLIGISIGGGAQYC 1b8qA 10 :ISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 34 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1b8qA 84 :ETHVVLILRGPEGF T0288 92 :KV 1b8qA 126 :AV Number of specific fragments extracted= 5 number of extra gaps= 0 total=2518 Number of alignments=642 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 1 :SMVP 1b8qA 1 :GSHM T0288 5 :GKVTLQKDAQNLIGISIGGGAQYC 1b8qA 10 :ISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 34 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1b8qA 84 :ETHVVLILRGPEGF T0288 92 :KV 1b8qA 126 :AV Number of specific fragments extracted= 5 number of extra gaps= 0 total=2523 Number of alignments=643 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYC 1b8qA 6 :EPNVISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 34 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1b8qA 84 :ETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=2526 Number of alignments=644 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1b8qA 9 :VISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKL 1b8qA 84 :ETHVVLILRGP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2529 Number of alignments=645 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQYC 1b8qA 10 :ISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 34 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1b8qA 84 :ETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=2532 Number of alignments=646 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQYC 1b8qA 10 :ISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 34 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1b8qA 84 :ETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=2535 Number of alignments=647 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1b8qA 6 :EPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1b8qA 84 :ETHVVLI T0288 85 :YNKLQYYKV 1b8qA 119 :PLGPPTKAV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2539 Number of alignments=648 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1b8qA 6 :EPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1b8qA 84 :ETHVVLI T0288 88 :LQYYKV 1b8qA 122 :PPTKAV Number of specific fragments extracted= 4 number of extra gaps= 0 total=2543 Number of alignments=649 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 1 :SMVP 1b8qA 1 :GSHM T0288 5 :GKVTLQKDAQNLIGISIGGGAQY 1b8qA 10 :ISVRLFKRKVGGLGFLVKERVSK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 33 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1b8qA 84 :ETHVVLI T0288 85 :YNKLQYYKV 1b8qA 119 :PLGPPTKAV Number of specific fragments extracted= 5 number of extra gaps= 0 total=2548 Number of alignments=650 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 1 :SMVP 1b8qA 1 :GSHM T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1b8qA 10 :ISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1b8qA 84 :ETHVVLI T0288 85 :YNKLQYYKV 1b8qA 119 :PLGPPTKAV Number of specific fragments extracted= 5 number of extra gaps= 0 total=2553 Number of alignments=651 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1b8qA 12 :VRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1b8qA 84 :ETHVVLI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2556 Number of alignments=652 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1b8qA 10 :ISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1b8qA 84 :ETHVVLI T0288 85 :Y 1b8qA 94 :P Number of specific fragments extracted= 4 number of extra gaps= 0 total=2560 Number of alignments=653 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQY 1b8qA 10 :ISVRLFKRKVGGLGFLVKERVSK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 33 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1b8qA 84 :ETHVVLI T0288 85 :YNKLQYYK 1b8qA 94 :PEGFTTHL Number of specific fragments extracted= 4 number of extra gaps= 0 total=2564 Number of alignments=654 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1b8qA 10 :ISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1b8qA 84 :ETHVVLI T0288 86 :NKLQYY 1b8qA 94 :PEGFTT Number of specific fragments extracted= 4 number of extra gaps= 0 total=2568 Number of alignments=655 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 1 :S 1b8qA 1 :G T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1b8qA 7 :PNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=2571 Number of alignments=656 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 1 :SMV 1b8qA 1 :GSH T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1b8qA 9 :VISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=2574 Number of alignments=657 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 1 :SMVP 1b8qA 1 :GSHM T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1b8qA 10 :ISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=2577 Number of alignments=658 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 1 :SM 1b8qA 1 :GS T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1b8qA 8 :NVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=2580 Number of alignments=659 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1b8qA 12 :VRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV Number of specific fragments extracted= 2 number of extra gaps= 0 total=2582 Number of alignments=660 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1b8qA 11 :SVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2584 Number of alignments=661 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1b8qA 9 :VISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 2 number of extra gaps= 0 total=2586 Number of alignments=662 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1b8qA 8 :NVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYK 1b8qA 32 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2588 Number of alignments=663 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nteA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nteA expands to /projects/compbio/data/pdb/1nte.pdb.gz 1nteA:Skipped atom 107, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 281, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 283, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 285, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 287, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 289, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 291, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 332, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 334, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 336, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 338, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 340, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 373, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 595, because occupancy 0.300 <= existing 0.700 in 1nteA Skipped atom 597, because occupancy 0.300 <= existing 0.700 in 1nteA Skipped atom 599, because occupancy 0.300 <= existing 0.700 in 1nteA Skipped atom 601, because occupancy 0.300 <= existing 0.700 in 1nteA # T0288 read from 1nteA/merged-a2m # 1nteA read from 1nteA/merged-a2m # adding 1nteA to template set # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0288)Q89 because last residue in template chain is (1nteA)F273 T0288 1 :S 1nteA 193 :A T0288 4 :PGKVTLQKDAQNLIGISIGGG 1nteA 196 :PRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1nteA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2592 Number of alignments=664 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0288)Q89 because last residue in template chain is (1nteA)F273 T0288 1 :S 1nteA 193 :A T0288 4 :PGKVTLQKDAQNLIGISIGGG 1nteA 196 :PRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1nteA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2596 Number of alignments=665 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set T0288 7 :VTLQKDAQNLIGISIGGG 1nteA 199 :ITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1nteA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2599 Number of alignments=666 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set T0288 5 :GKVTLQKDAQNLIGISIGGG 1nteA 197 :RTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1nteA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2602 Number of alignments=667 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0288 1 :S 1nteA 193 :A T0288 4 :PGKVTLQKDAQNLIGISIGG 1nteA 196 :PRTITMHKDSTGHVGFIFKN T0288 31 :LYIVQVFDNTPAALDG 1nteA 216 :GKITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP T0288 92 :KV 1nteA 272 :AF Number of specific fragments extracted= 5 number of extra gaps= 1 total=2607 Number of alignments=668 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0288 1 :S 1nteA 193 :A T0288 4 :PGKVTLQKDAQNLIGISIGG 1nteA 196 :PRTITMHKDSTGHVGFIFKN T0288 31 :LYIVQVFDNTPAALDG 1nteA 216 :GKITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP T0288 92 :KV 1nteA 272 :AF Number of specific fragments extracted= 5 number of extra gaps= 1 total=2612 Number of alignments=669 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set T0288 7 :VTLQKDAQNLIGISIGG 1nteA 199 :ITMHKDSTGHVGFIFKN T0288 31 :LYIVQVFDNTPAALDG 1nteA 216 :GKITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2615 Number of alignments=670 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set T0288 6 :KVTLQKDAQNLIGISIGG 1nteA 198 :TITMHKDSTGHVGFIFKN T0288 31 :LYIVQVFDNTPAALDG 1nteA 216 :GKITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2618 Number of alignments=671 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDGTVAAGD 1nteA 218 :ITSIVKDSSAARNGLLTEHN T0288 54 :ITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1nteA 238 :ICEINGQNVIGLKDSQIADILSTSGTVVTI Number of specific fragments extracted= 3 number of extra gaps= 1 total=2621 Number of alignments=672 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDGTVAA 1nteA 218 :ITSIVKDSSAARNGLLTE T0288 52 :DEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1nteA 236 :HNICEINGQNVIGLKDSQIADILSTSGTVVTI Number of specific fragments extracted= 3 number of extra gaps= 1 total=2624 Number of alignments=673 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0288)Q89 because last residue in template chain is (1nteA)F273 T0288 1 :S 1nteA 193 :A T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2628 Number of alignments=674 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0288)Q89 because last residue in template chain is (1nteA)F273 T0288 1 :S 1nteA 193 :A T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2632 Number of alignments=675 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0288)Q89 because last residue in template chain is (1nteA)F273 T0288 1 :S 1nteA 192 :G T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2636 Number of alignments=676 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0288)Q89 because last residue in template chain is (1nteA)F273 T0288 1 :S 1nteA 192 :G T0288 4 :PGKVTLQKDAQNLIGISIGGG 1nteA 196 :PRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1nteA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2640 Number of alignments=677 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 1 total=2643 Number of alignments=678 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 1 total=2646 Number of alignments=679 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0288)Q89 because last residue in template chain is (1nteA)F273 T0288 1 :S 1nteA 193 :A T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2650 Number of alignments=680 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0288 1 :S 1nteA 193 :A T0288 4 :PGKVTLQKDAQNLIGISIGGG 1nteA 196 :PRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1nteA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2654 Number of alignments=681 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0288)K87 because last residue in template chain is (1nteA)F273 T0288 1 :S 1nteA 193 :A T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT T0288 85 :YN 1nteA 271 :PA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2659 Number of alignments=682 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0288)K87 because last residue in template chain is (1nteA)F273 T0288 1 :S 1nteA 193 :A T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT T0288 85 :YN 1nteA 271 :PA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2664 Number of alignments=683 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)P4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0288)K87 because last residue in template chain is (1nteA)F273 T0288 1 :SM 1nteA 192 :GA T0288 5 :GKVTLQKDAQNLIGISIGGGA 1nteA 197 :RTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT T0288 85 :YN 1nteA 271 :PA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2669 Number of alignments=684 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0288)Q89 because last residue in template chain is (1nteA)F273 T0288 1 :SM 1nteA 192 :GA T0288 4 :PGKVTLQKDAQNLIGISIGGG 1nteA 196 :PRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1nteA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT T0288 86 :NKL 1nteA 270 :MPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2674 Number of alignments=685 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2677 Number of alignments=686 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT Number of specific fragments extracted= 3 number of extra gaps= 1 total=2680 Number of alignments=687 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT T0288 85 :YN 1nteA 271 :PA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2684 Number of alignments=688 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0288 1 :S 1nteA 193 :A T0288 4 :PGKVTLQKDAQNLIGISIGGG 1nteA 196 :PRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1nteA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT Number of specific fragments extracted= 4 number of extra gaps= 1 total=2688 Number of alignments=689 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0288)Q89 because last residue in template chain is (1nteA)F273 T0288 1 :S 1nteA 192 :G T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2692 Number of alignments=690 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)Q89 because last residue in template chain is (1nteA)F273 T0288 1 :SM 1nteA 192 :GA T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2696 Number of alignments=691 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)P4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0288)Q89 because last residue in template chain is (1nteA)F273 T0288 1 :SM 1nteA 192 :GA T0288 5 :GKVTL 1nteA 196 :PRTIT T0288 10 :QKDAQNLIGISIGGG 1nteA 202 :HKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1nteA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2701 Number of alignments=692 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)P4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0288)Q89 because last residue in template chain is (1nteA)F273 T0288 1 :SM 1nteA 192 :GA T0288 5 :GKVTL 1nteA 196 :PRTIT T0288 10 :QKDAQNLIGISIGGG 1nteA 202 :HKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1nteA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2706 Number of alignments=693 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0288 1 :S 1nteA 193 :A T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1nteA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTI Number of specific fragments extracted= 4 number of extra gaps= 1 total=2710 Number of alignments=694 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set T0288 5 :GKVTLQKDAQNLIGISIGGGA 1nteA 197 :RTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1nteA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2713 Number of alignments=695 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0288 4 :PGKVTLQKDAQNLIGISIGGG 1nteA 196 :PRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1nteA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 1 total=2716 Number of alignments=696 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0288 4 :PGKVTLQKDAQNLIGISIGGG 1nteA 196 :PRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1nteA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1nteA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 1 total=2719 Number of alignments=697 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fe5A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2fe5A/merged-a2m # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2722 Number of alignments=698 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2725 Number of alignments=699 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 7 :VTLQKDAQN 2fe5A 227 :VNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYL Number of specific fragments extracted= 3 number of extra gaps= 0 total=2728 Number of alignments=700 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 6 :KVTLQKDAQN 2fe5A 226 :EVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2731 Number of alignments=701 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 1 :SMVPGKVTLQKDAQNL 2fe5A 221 :SMTIMEVNLLKGPKGL T0288 18 :GISIGGGAQ 2fe5A 237 :GFSIAGGIG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYL T0288 87 :KLQYYKV 2fe5A 308 :KVAKPGS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2735 Number of alignments=702 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 1 :SMVP 2fe5A 221 :SMTI T0288 6 :KVTLQKDAQNLIGISIGGGAQ 2fe5A 225 :MEVNLLKGPKGLGFSIAGGIG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYL T0288 87 :KLQYYKV 2fe5A 308 :KVAKPGS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2739 Number of alignments=703 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 7 :VTLQKDAQNLIGISIGGGAQ 2fe5A 226 :EVNLLKGPKGLGFSIAGGIG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2741 Number of alignments=704 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 2fe5A 225 :MEVNLLKGPKGLGFSIAGGIG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2743 Number of alignments=705 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 2fe5A 255 :IYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=2744 Number of alignments=706 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 8 :TLQKDAQN 2fe5A 228 :NLLKGPKG T0288 17 :IGISIGGGA 2fe5A 236 :LGFSIAGGI T0288 26 :QYCP 2fe5A 247 :QHIP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2748 Number of alignments=707 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0288)Y90 because last residue in template chain is (2fe5A)S314 T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2751 Number of alignments=708 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0288)Y90 because last residue in template chain is (2fe5A)S314 T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2754 Number of alignments=709 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2757 Number of alignments=710 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2760 Number of alignments=711 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2763 Number of alignments=712 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 3 :VPGKVTLQKDAQN 2fe5A 223 :TIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2766 Number of alignments=713 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0288)Y90 because last residue in template chain is (2fe5A)S314 T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2769 Number of alignments=714 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2772 Number of alignments=715 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0288)K87 because last residue in template chain is (2fe5A)S314 T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK T0288 85 :YN 2fe5A 312 :PG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2776 Number of alignments=716 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0288)K87 because last residue in template chain is (2fe5A)S314 T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK T0288 85 :YN 2fe5A 312 :PG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2780 Number of alignments=717 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0288)K87 because last residue in template chain is (2fe5A)S314 T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK T0288 85 :YN 2fe5A 312 :PG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2784 Number of alignments=718 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0288)K87 because last residue in template chain is (2fe5A)S314 T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK T0288 85 :YN 2fe5A 312 :PG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2788 Number of alignments=719 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2791 Number of alignments=720 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 4 :PGKVTLQKDAQN 2fe5A 224 :IMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2794 Number of alignments=721 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK T0288 85 :YN 2fe5A 312 :PG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2798 Number of alignments=722 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 1 :SMVPGKVTLQKDAQN 2fe5A 221 :SMTIMEVNLLKGPKG T0288 17 :IGISIGGGAQYCP 2fe5A 236 :LGFSIAGGIGNQH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fe5A 254 :SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2801 Number of alignments=723 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0288)Y90 because last residue in template chain is (2fe5A)S314 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2803 Number of alignments=724 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0288)Y90 because last residue in template chain is (2fe5A)S314 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2805 Number of alignments=725 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0288)Y90 because last residue in template chain is (2fe5A)S314 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2807 Number of alignments=726 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0288)Y90 because last residue in template chain is (2fe5A)S314 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2809 Number of alignments=727 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 2fe5A 224 :IMEVNLLKGPKGLGFSIAGGIG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2811 Number of alignments=728 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 2fe5A 224 :IMEVNLLKGPKGLGFSIAGGIG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKV Number of specific fragments extracted= 2 number of extra gaps= 0 total=2813 Number of alignments=729 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2815 Number of alignments=730 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 2fe5A 251 :GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2817 Number of alignments=731 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1r6jA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1r6jA/merged-a2m # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0288)Q89 because last residue in template chain is (1r6jA)F273 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGG 1r6jA 193 :AMDPRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2820 Number of alignments=732 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0288)Q89 because last residue in template chain is (1r6jA)F273 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGG 1r6jA 193 :AMDPRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2823 Number of alignments=733 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 7 :VTLQKDAQNLIGISIGGG 1r6jA 199 :ITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2826 Number of alignments=734 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 5 :GKVTLQKDAQNLIGISIGGG 1r6jA 197 :RTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2829 Number of alignments=735 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGG 1r6jA 193 :AMDPRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2832 Number of alignments=736 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGG 1r6jA 193 :AMDPRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2835 Number of alignments=737 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 7 :VTLQKDAQNLIGISIGGG 1r6jA 199 :ITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2838 Number of alignments=738 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 5 :GKVTLQKDAQNLIGISIGGG 1r6jA 197 :RTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2841 Number of alignments=739 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 1 :SMVPGKVTLQKDAQNLIGISIGG 1r6jA 193 :AMDPRTITMHKDSTGHVGFIFKN T0288 31 :LYIVQVFDNTPAALDG 1r6jA 216 :GKITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP T0288 92 :KV 1r6jA 272 :AF Number of specific fragments extracted= 4 number of extra gaps= 0 total=2845 Number of alignments=740 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 1 :SMVPGKVTLQKDAQNLIGISIGG 1r6jA 193 :AMDPRTITMHKDSTGHVGFIFKN T0288 31 :LYIVQVFDNTPAALDG 1r6jA 216 :GKITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP T0288 92 :KV 1r6jA 272 :AF Number of specific fragments extracted= 4 number of extra gaps= 0 total=2849 Number of alignments=741 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 7 :VTLQKDAQNLIGISIGG 1r6jA 199 :ITMHKDSTGHVGFIFKN T0288 31 :LYIVQVFDNTPAALDG 1r6jA 216 :GKITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2852 Number of alignments=742 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 6 :KVTLQKDAQNLIGISIGG 1r6jA 198 :TITMHKDSTGHVGFIFKN T0288 31 :LYIVQVFDNTPAALDG 1r6jA 216 :GKITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2855 Number of alignments=743 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGA 1r6jA 194 :MDPRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDGTVAAGD 1r6jA 218 :ITSIVKDSSAARNGLLTEHN T0288 54 :ITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1r6jA 238 :ICEINGQNVIGLKDSQIADILSTSGTVVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2858 Number of alignments=744 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGA 1r6jA 194 :MDPRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDGTVAA 1r6jA 218 :ITSIVKDSSAARNGLLTE T0288 52 :DEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1r6jA 236 :HNICEINGQNVIGLKDSQIADILSTSGTVVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2861 Number of alignments=745 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0288)Q89 because last residue in template chain is (1r6jA)F273 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1r6jA 193 :AMDPRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2864 Number of alignments=746 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0288)Q89 because last residue in template chain is (1r6jA)F273 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1r6jA 193 :AMDPRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2867 Number of alignments=747 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0288)Q89 because last residue in template chain is (1r6jA)F273 T0288 1 :SMVP 1r6jA 192 :GAMD T0288 5 :GKVTLQKDAQNLIGISIGGGA 1r6jA 197 :RTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2871 Number of alignments=748 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0288)Q89 because last residue in template chain is (1r6jA)F273 T0288 1 :SMVP 1r6jA 192 :GAMD T0288 5 :GKVTLQKDAQNLIGISIGGG 1r6jA 197 :RTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2875 Number of alignments=749 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGA 1r6jA 194 :MDPRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2878 Number of alignments=750 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 3 :VPGKVTLQKDAQNLIGISIGGGA 1r6jA 195 :DPRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2881 Number of alignments=751 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0288)Q89 because last residue in template chain is (1r6jA)F273 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1r6jA 193 :AMDPRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2884 Number of alignments=752 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGG 1r6jA 193 :AMDPRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2887 Number of alignments=753 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0288)K87 because last residue in template chain is (1r6jA)F273 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1r6jA 193 :AMDPRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT T0288 85 :YN 1r6jA 271 :PA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2891 Number of alignments=754 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0288)K87 because last residue in template chain is (1r6jA)F273 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1r6jA 193 :AMDPRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT T0288 85 :YN 1r6jA 271 :PA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2895 Number of alignments=755 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0288)K87 because last residue in template chain is (1r6jA)F273 T0288 1 :SMVP 1r6jA 192 :GAMD T0288 5 :GKVTLQKDAQNLIGISIGGGA 1r6jA 197 :RTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT T0288 85 :YN 1r6jA 271 :PA Number of specific fragments extracted= 5 number of extra gaps= 0 total=2900 Number of alignments=756 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0288)Q89 because last residue in template chain is (1r6jA)F273 T0288 1 :SMVP 1r6jA 192 :GAMD T0288 5 :GKVTLQKDAQNLIGISIGGG 1r6jA 197 :RTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT T0288 87 :KL 1r6jA 271 :PA Number of specific fragments extracted= 5 number of extra gaps= 0 total=2905 Number of alignments=757 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1r6jA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2908 Number of alignments=758 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 3 :VPGKVTLQKDAQNLIGISIGGGA 1r6jA 195 :DPRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2911 Number of alignments=759 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGA 1r6jA 194 :MDPRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT T0288 85 :YN 1r6jA 271 :PA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2915 Number of alignments=760 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGG 1r6jA 193 :AMDPRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2918 Number of alignments=761 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0288)Q89 because last residue in template chain is (1r6jA)F273 T0288 1 :S 1r6jA 192 :G T0288 2 :MVPGKVTLQKDAQNLIGISIGGGA 1r6jA 194 :MDPRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2922 Number of alignments=762 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0288)Q89 because last residue in template chain is (1r6jA)F273 T0288 1 :SMV 1r6jA 192 :GAM T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1r6jA 196 :PRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2926 Number of alignments=763 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0288)Q89 because last residue in template chain is (1r6jA)F273 T0288 1 :SMVPGKVTL 1r6jA 192 :GAMDPRTIT T0288 10 :QKDAQNLIGISIGGG 1r6jA 202 :HKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2930 Number of alignments=764 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0288)Q89 because last residue in template chain is (1r6jA)F273 T0288 1 :SM 1r6jA 192 :GA T0288 3 :VPGKVTLQKDAQNLIGISIGGG 1r6jA 195 :DPRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2934 Number of alignments=765 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1r6jA 193 :AMDPRTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2937 Number of alignments=766 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 5 :GKVTLQKDAQNLIGISIGGGA 1r6jA 197 :RTITMHKDSTGHVGFIFKNGK T0288 33 :IVQVFDNTPAALDG 1r6jA 218 :ITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2940 Number of alignments=767 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGG 1r6jA 193 :AMDPRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2943 Number of alignments=768 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0288 2 :MVPGKVTLQKDAQNLIGISIGGG 1r6jA 194 :MDPRTITMHKDSTGHVGFIFKNG T0288 32 :YIVQVFDNTPAALDG 1r6jA 217 :KITSIVKDSSAARNG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1r6jA 232 :LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2946 Number of alignments=769 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qavA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1qavA/merged-a2m # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1qavA)K164 T0288 3 :VPGKVTLQKDAQNLIGISIGGG 1qavA 78 :QRRRVTVRKADAGGLGISIKGG T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 101 :ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 2 number of extra gaps= 0 total=2948 Number of alignments=770 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 6 :KVTLQKDAQNLIGISIGGG 1qavA 81 :RVTVRKADAGGLGISIKGG T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1qavA 101 :ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV Number of specific fragments extracted= 2 number of extra gaps= 0 total=2950 Number of alignments=771 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1qavA)K164 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=2951 Number of alignments=772 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1qavA)K164 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=2952 Number of alignments=773 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 7 :VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1qavA 82 :VTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=2953 Number of alignments=774 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1qavA 80 :RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLE Number of specific fragments extracted= 1 number of extra gaps= 0 total=2954 Number of alignments=775 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVL T0288 92 :KV 1qavA 159 :EV Number of specific fragments extracted= 2 number of extra gaps= 0 total=2956 Number of alignments=776 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=2957 Number of alignments=777 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 7 :VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1qavA 82 :VTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=2958 Number of alignments=778 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1qavA 81 :RVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=2959 Number of alignments=779 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=2960 Number of alignments=780 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1qavA 80 :RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=2961 Number of alignments=781 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1qavA)K164 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=2962 Number of alignments=782 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1qavA)K164 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=2963 Number of alignments=783 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1qavA)K164 T0288 1 :SMVP 1qavA 75 :GSLQ T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 80 :RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 2 number of extra gaps= 0 total=2965 Number of alignments=784 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1qavA)K164 T0288 1 :SMVP 1qavA 75 :GSLQ T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 80 :RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 2 number of extra gaps= 0 total=2967 Number of alignments=785 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=2968 Number of alignments=786 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1qavA 78 :QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=2969 Number of alignments=787 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=2970 Number of alignments=788 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=2971 Number of alignments=789 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1qavA)K164 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=2972 Number of alignments=790 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1qavA)K164 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=2973 Number of alignments=791 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1qavA)K164 T0288 1 :SMVP 1qavA 75 :GSLQ T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 80 :RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 2 number of extra gaps= 0 total=2975 Number of alignments=792 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1qavA)K164 T0288 1 :SMVP 1qavA 75 :GSLQ T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 80 :RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 2 number of extra gaps= 0 total=2977 Number of alignments=793 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=2978 Number of alignments=794 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1qavA 78 :QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2979 Number of alignments=795 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=2980 Number of alignments=796 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=2981 Number of alignments=797 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1qavA)K164 T0288 1 :S 1qavA 75 :G T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 77 :LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 2 number of extra gaps= 0 total=2983 Number of alignments=798 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1qavA)K164 T0288 1 :SMVP 1qavA 75 :GSLQ T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 80 :RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 2 number of extra gaps= 0 total=2985 Number of alignments=799 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1qavA)K164 T0288 1 :SMVPGKVTLQKD 1qavA 75 :GSLQRRRVTVRK T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 88 :DAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 2 number of extra gaps= 0 total=2987 Number of alignments=800 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1qavA)K164 T0288 1 :SMVPGKVTLQK 1qavA 75 :GSLQRRRVTVR T0288 12 :DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 87 :ADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 2 number of extra gaps= 0 total=2989 Number of alignments=801 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 7 :VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1qavA 82 :VTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=2990 Number of alignments=802 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1qavA 81 :RVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2991 Number of alignments=803 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 76 :SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=2992 Number of alignments=804 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1qavA 78 :QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 1 number of extra gaps= 0 total=2993 Number of alignments=805 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wfvA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1wfvA/merged-a2m # 1wfvA read from 1wfvA/merged-a2m # found chain 1wfvA in template set T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 1wfvA 24 :FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2994 Number of alignments=806 # 1wfvA read from 1wfvA/merged-a2m # found chain 1wfvA in template set T0288 10 :QKDAQN 1wfvA 18 :EKGAKG T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1wfvA 24 :FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2996 Number of alignments=807 # 1wfvA read from 1wfvA/merged-a2m # found chain 1wfvA in template set T0288 1 :SMVPGKVTLQKDAQN 1wfvA 9 :DFDYFTVDMEKGAKG T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1wfvA 24 :FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGS T0288 92 :KV 1wfvA 102 :SG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2999 Number of alignments=808 # 1wfvA read from 1wfvA/merged-a2m # found chain 1wfvA in template set T0288 1 :SMVPGKVTLQKDAQN 1wfvA 9 :DFDYFTVDMEKGAKG T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1wfvA 24 :FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGS T0288 92 :KV 1wfvA 102 :SG Number of specific fragments extracted= 3 number of extra gaps= 0 total=3002 Number of alignments=809 # 1wfvA read from 1wfvA/merged-a2m # found chain 1wfvA in template set T0288 1 :SMVPGKVTLQKDAQN 1wfvA 9 :DFDYFTVDMEKGAKG T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1wfvA 24 :FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3004 Number of alignments=810 # 1wfvA read from 1wfvA/merged-a2m # found chain 1wfvA in template set T0288 3 :VPGKVTLQKDAQN 1wfvA 11 :DYFTVDMEKGAKG T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1wfvA 24 :FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3006 Number of alignments=811 # 1wfvA read from 1wfvA/merged-a2m # found chain 1wfvA in template set Warning: unaligning (T0288)L88 because last residue in template chain is (1wfvA)G103 T0288 1 :SMVPGKVTLQKDAQN 1wfvA 9 :DFDYFTVDMEKGAKG T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1wfvA 24 :FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLL T0288 85 :YNK 1wfvA 100 :PSS Number of specific fragments extracted= 3 number of extra gaps= 0 total=3009 Number of alignments=812 # 1wfvA read from 1wfvA/merged-a2m # found chain 1wfvA in template set T0288 1 :SMVPGKVTLQKDAQN 1wfvA 9 :DFDYFTVDMEKGAKG T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1wfvA 24 :FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLL T0288 85 :YNK 1wfvA 100 :PSS Number of specific fragments extracted= 3 number of extra gaps= 0 total=3012 Number of alignments=813 # 1wfvA read from 1wfvA/merged-a2m # found chain 1wfvA in template set T0288 1 :SMVPGKVTLQKDAQN 1wfvA 9 :DFDYFTVDMEKGAKG T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1wfvA 24 :FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=3014 Number of alignments=814 # 1wfvA read from 1wfvA/merged-a2m # found chain 1wfvA in template set T0288 4 :PGKVTLQKDAQN 1wfvA 12 :YFTVDMEKGAKG T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1wfvA 24 :FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=3016 Number of alignments=815 # 1wfvA read from 1wfvA/merged-a2m # found chain 1wfvA in template set T0288 1 :SM 1wfvA 1 :GS T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1wfvA 10 :FDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSGP Number of specific fragments extracted= 2 number of extra gaps= 0 total=3018 Number of alignments=816 # 1wfvA read from 1wfvA/merged-a2m # found chain 1wfvA in template set T0288 1 :SM 1wfvA 1 :GS T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1wfvA 10 :FDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGS T0288 92 :KV 1wfvA 102 :SG Number of specific fragments extracted= 3 number of extra gaps= 0 total=3021 Number of alignments=817 # 1wfvA read from 1wfvA/merged-a2m # found chain 1wfvA in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1wfvA 9 :DFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3022 Number of alignments=818 # 1wfvA read from 1wfvA/merged-a2m # found chain 1wfvA in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1wfvA 12 :YFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3023 Number of alignments=819 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qavB/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1qavB expands to /projects/compbio/data/pdb/1qav.pdb.gz 1qavB:# T0288 read from 1qavB/merged-a2m # 1qavB read from 1qavB/merged-a2m # adding 1qavB to template set # found chain 1qavB in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGG 1qavB 1014 :NVISVRLFKRKVGGLGFLVKER T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1qavB 1036 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0288 79 :GEVTIHYNKLQ 1qavB 1091 :THVVLILRGPE T0288 90 :YYKV 1qavB 1122 :VTQP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3027 Number of alignments=820 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 6 :KVTLQKDAQNLIGISIGGG 1qavB 1017 :SVRLFKRKVGGLGFLVKER T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1qavB 1036 :VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0288 79 :GEVTIHY 1qavB 1091 :THVVLIL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3030 Number of alignments=821 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHY 1qavB 1089 :SETHVVLI T0288 86 :NKLQYYKV 1qavB 1119 :TIRVTQPL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3034 Number of alignments=822 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNK 1qavB 1089 :SETHVVLILR T0288 88 :LQYYKV 1qavB 1121 :RVTQPL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3038 Number of alignments=823 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1qavB 1018 :VRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTI 1qavB 1089 :SETHVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=3041 Number of alignments=824 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1qavB 1017 :SVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qavB 1089 :SETHVVL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3044 Number of alignments=825 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 1qavB 1039 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3045 Number of alignments=826 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 1qavB 1039 :PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=3046 Number of alignments=827 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYC 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1040 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1qavB 1090 :ETHVVLILRGPEGF T0288 92 :KV 1qavB 1125 :PL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3050 Number of alignments=828 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1qavB 1090 :ETHVVLILRGPEGF T0288 92 :KV 1qavB 1125 :PL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3054 Number of alignments=829 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYC 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1040 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1qavB 1090 :ETHVVLILRGPEGF T0288 92 :KV 1qavB 1125 :PL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3058 Number of alignments=830 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYC 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1040 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1qavB 1090 :ETHVVLILRGPEGF T0288 92 :KV 1qavB 1125 :PL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3062 Number of alignments=831 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYC 1qavB 1015 :VISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1040 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1qavB 1090 :ETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=3065 Number of alignments=832 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1qavB 1015 :VISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKL 1qavB 1090 :ETHVVLILRGP Number of specific fragments extracted= 3 number of extra gaps= 0 total=3068 Number of alignments=833 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYC 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1040 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1qavB 1090 :ETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=3071 Number of alignments=834 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQYC 1qavB 1013 :PNVISVRLFKRKVGGLGFLVKERVSKP T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1040 :PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIHYNKLQYY 1qavB 1090 :ETHVVLILRGPEGF Number of specific fragments extracted= 3 number of extra gaps= 0 total=3074 Number of alignments=835 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qavB 1090 :ETHVVLI T0288 85 :YNKLQYYKV 1qavB 1118 :KTIRVTQPL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3078 Number of alignments=836 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qavB 1090 :ETHVVLI T0288 85 :YNKLQYYKV 1qavB 1118 :KTIRVTQPL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3082 Number of alignments=837 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qavB 1090 :ETHVVLI T0288 85 :YNKL 1qavB 1117 :PKTI T0288 89 :QYYKV 1qavB 1122 :VTQPL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3087 Number of alignments=838 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qavB 1090 :ETHVVLI T0288 89 :QYYKV 1qavB 1122 :VTQPL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3091 Number of alignments=839 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1qavB 1018 :VRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qavB 1090 :ETHVVLI Number of specific fragments extracted= 3 number of extra gaps= 0 total=3094 Number of alignments=840 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1qavB 1016 :ISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qavB 1090 :ETHVVLI T0288 85 :Y 1qavB 1100 :P Number of specific fragments extracted= 4 number of extra gaps= 0 total=3098 Number of alignments=841 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1qavB 1013 :PNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qavB 1090 :ETHVVLI T0288 87 :K 1qavB 1107 :L Number of specific fragments extracted= 4 number of extra gaps= 0 total=3102 Number of alignments=842 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1qavB 1013 :PNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI T0288 78 :KGEVTIH 1qavB 1090 :ETHVVLI Number of specific fragments extracted= 3 number of extra gaps= 0 total=3105 Number of alignments=843 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 2 number of extra gaps= 0 total=3107 Number of alignments=844 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF Number of specific fragments extracted= 2 number of extra gaps= 0 total=3109 Number of alignments=845 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS T0288 80 :EVTIHYNKLQY 1qavB 1092 :HVVLILRGPEG T0288 91 :YKV 1qavB 1124 :QPL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3113 Number of alignments=846 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE T0288 81 :VTIHYNKLQYYKV 1qavB 1093 :VVLILRGPEGFTT Number of specific fragments extracted= 3 number of extra gaps= 0 total=3116 Number of alignments=847 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1qavB 1018 :VRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV Number of specific fragments extracted= 2 number of extra gaps= 0 total=3118 Number of alignments=848 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1qavB 1017 :SVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL Number of specific fragments extracted= 2 number of extra gaps= 0 total=3120 Number of alignments=849 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1qavB 1013 :PNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS T0288 80 :EVTIHYNKLQY 1qavB 1092 :HVVLILRGPEG Number of specific fragments extracted= 3 number of extra gaps= 0 total=3123 Number of alignments=850 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1qavB 1013 :PNVISVRLFKRKVGGLGFLVKERVS T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 1qavB 1038 :KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE T0288 81 :VTIHYNKLQY 1qavB 1093 :VVLILRGPEG Number of specific fragments extracted= 3 number of extra gaps= 0 total=3126 Number of alignments=851 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1m5zA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1m5zA expands to /projects/compbio/data/pdb/1m5z.pdb.gz 1m5zA:# T0288 read from 1m5zA/merged-a2m # 1m5zA read from 1m5zA/merged-a2m # adding 1m5zA to template set # found chain 1m5zA in template set T0288 1 :SMVPGKVTLQKDAQ 1m5zA 19 :PVELHKVTLYKDSG T0288 15 :NLIGISIGGGAQ 1m5zA 34 :EDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV T0288 93 :V 1m5zA 102 :I Number of specific fragments extracted= 5 number of extra gaps= 0 total=3131 Number of alignments=852 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 1 :SMVPGKVTLQKDAQ 1m5zA 19 :PVELHKVTLYKDSG T0288 15 :NLIGISIGGGAQ 1m5zA 34 :EDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR Number of specific fragments extracted= 4 number of extra gaps= 0 total=3135 Number of alignments=853 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 4 :PGKVTLQKDAQ 1m5zA 22 :LHKVTLYKDSG T0288 15 :NLIGISIGGGAQ 1m5zA 34 :EDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3139 Number of alignments=854 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 6 :KVTLQKDAQ 1m5zA 24 :KVTLYKDSG T0288 15 :NLIGISIGGGAQ 1m5zA 34 :EDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3143 Number of alignments=855 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 6 :KVTLQKD 1m5zA 24 :KVTLYKD Number of specific fragments extracted= 1 number of extra gaps= 0 total=3144 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 6 :KVTLQKDAQ 1m5zA 24 :KVTLYKDSG T0288 15 :NLIGISIGGGAQY 1m5zA 34 :EDFGFSVADGLLE T0288 29 :PCLYIVQVFDNTPAALDG 1m5zA 47 :KGVYVKNIRPAGPGDLGG Number of specific fragments extracted= 3 number of extra gaps= 0 total=3147 Number of alignments=856 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1m5zA)P106 T0288 1 :SMVPGKVTLQKDAQ 1m5zA 19 :PVELHKVTLYKDSG T0288 15 :NLIGISIGGGA 1m5zA 34 :EDFGFSVADGL T0288 27 :YCPCLYIVQVFDNTPAALDG 1m5zA 45 :LEKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3151 Number of alignments=857 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1m5zA)P106 T0288 1 :SMVPGKVTLQKDAQ 1m5zA 19 :PVELHKVTLYKDSG T0288 15 :NLIGISIGGGA 1m5zA 34 :EDFGFSVADGL T0288 27 :YCPCLYIVQVFDNTPAALDG 1m5zA 45 :LEKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3155 Number of alignments=858 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 1 :SMVP 1m5zA 16 :SPTP T0288 5 :GKVTLQKDAQ 1m5zA 23 :HKVTLYKDSG T0288 15 :NLIGISIGGGAQYC 1m5zA 34 :EDFGFSVADGLLEK T0288 30 :CLYIVQVFDNTPAALDG 1m5zA 48 :GVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=3160 Number of alignments=859 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1m5zA)P106 T0288 1 :SMVP 1m5zA 16 :SPTP T0288 5 :GKVTLQKDAQ 1m5zA 23 :HKVTLYKDSG T0288 15 :NLIGISIGGGAQYC 1m5zA 34 :EDFGFSVADGLLEK T0288 30 :CLYIVQVFDNTPAALDG 1m5zA 48 :GVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=3165 Number of alignments=860 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1m5zA)P106 T0288 1 :SMVPGKVTLQKDAQ 1m5zA 19 :PVELHKVTLYKDSG T0288 15 :NLIGISIGGGA 1m5zA 34 :EDFGFSVADGL T0288 27 :YCPCLYIVQVFDNTPAALDG 1m5zA 45 :LEKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3169 Number of alignments=861 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 3 :VPGKVTLQKDAQ 1m5zA 21 :ELHKVTLYKDSG T0288 15 :NLIGISIGGGA 1m5zA 34 :EDFGFSVADGL T0288 27 :YCPCLYIVQVFDNTPAALDG 1m5zA 45 :LEKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3173 Number of alignments=862 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1m5zA)P106 T0288 1 :SMVPGKVTLQKDAQ 1m5zA 19 :PVELHKVTLYKDSG T0288 15 :NLIGISIGGGAQYC 1m5zA 34 :EDFGFSVADGLLEK T0288 30 :CLYIVQVFDNTPAALDG 1m5zA 48 :GVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3177 Number of alignments=863 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 1 :SMVPGKVTLQKDAQ 1m5zA 19 :PVELHKVTLYKDSG T0288 15 :NLIGISIGGGAQYC 1m5zA 34 :EDFGFSVADGLLEK T0288 30 :CLYIVQVFDNTPAALDG 1m5zA 48 :GVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3181 Number of alignments=864 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1m5zA)P106 T0288 1 :SMVPGKVTLQKDAQ 1m5zA 19 :PVELHKVTLYKDSG T0288 15 :NLIGISIGGGA 1m5zA 34 :EDFGFSVADGL T0288 27 :YCPCLYIVQVFDNTPAALDG 1m5zA 45 :LEKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3185 Number of alignments=865 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1m5zA)P106 T0288 1 :SMVPGKVTLQKDAQ 1m5zA 19 :PVELHKVTLYKDSG T0288 15 :NLIGISIGGGA 1m5zA 34 :EDFGFSVADGL T0288 27 :YCPCLYIVQVFDNTPAALDG 1m5zA 45 :LEKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV T0288 87 :KL 1m5zA 104 :RN Number of specific fragments extracted= 5 number of extra gaps= 0 total=3190 Number of alignments=866 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0288)K87 because last residue in template chain is (1m5zA)P106 T0288 1 :SMVP 1m5zA 16 :SPTP T0288 5 :GKVTLQKDAQ 1m5zA 23 :HKVTLYKDSG T0288 15 :NLIGISIGGGAQ 1m5zA 34 :EDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV T0288 85 :YN 1m5zA 104 :RN Number of specific fragments extracted= 6 number of extra gaps= 0 total=3196 Number of alignments=867 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 1 :SMVP 1m5zA 16 :SPTP T0288 5 :GKVTLQKDAQ 1m5zA 23 :HKVTLYKDSG T0288 15 :NLIGISIGGGAQ 1m5zA 34 :EDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV T0288 92 :KV 1m5zA 105 :NP Number of specific fragments extracted= 6 number of extra gaps= 0 total=3202 Number of alignments=868 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 1 :SMVPGKVTLQKDAQ 1m5zA 19 :PVELHKVTLYKDSG T0288 15 :NLIGISIGGGA 1m5zA 34 :EDFGFSVADGL T0288 27 :YCPCLYIVQVFDNTPAALDG 1m5zA 45 :LEKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3206 Number of alignments=869 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 4 :PGKVTLQKDAQ 1m5zA 22 :LHKVTLYKDSG T0288 15 :NLIGISIGGGA 1m5zA 34 :EDFGFSVADGL T0288 27 :YCPCLYIVQVFDNTPAALDG 1m5zA 45 :LEKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI Number of specific fragments extracted= 4 number of extra gaps= 0 total=3210 Number of alignments=870 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 1 :SMVPGKVTLQKDAQ 1m5zA 19 :PVELHKVTLYKDSG T0288 15 :NLIGISIGGGAQ 1m5zA 34 :EDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3214 Number of alignments=871 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 1 :SMVPGKVTLQKDAQ 1m5zA 19 :PVELHKVTLYKDSG T0288 15 :NLIGISIGGGAQ 1m5zA 34 :EDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3218 Number of alignments=872 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1m5zA)P106 T0288 1 :SMVPG 1m5zA 16 :SPTPV T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1m5zA 25 :VTLYKDSGMEDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3222 Number of alignments=873 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1m5zA)P106 T0288 1 :SMVPG 1m5zA 16 :SPTPV T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1m5zA 25 :VTLYKDSGMEDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3226 Number of alignments=874 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1m5zA)P106 T0288 1 :SMVPGKV 1m5zA 16 :SPTPVEL T0288 8 :TLQK 1m5zA 25 :VTLY T0288 12 :DAQNLIGISIGGGAQ 1m5zA 31 :SGMEDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=3231 Number of alignments=875 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1m5zA)P106 T0288 1 :SM 1m5zA 16 :SP T0288 3 :VPGKVTLQKDAQ 1m5zA 21 :ELHKVTLYKDSG T0288 15 :NLIGISIGGGAQ 1m5zA 34 :EDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=3236 Number of alignments=876 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1m5zA 25 :VTLYKDSGMEDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3239 Number of alignments=877 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1m5zA 26 :TLYKDSGMEDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI Number of specific fragments extracted= 3 number of extra gaps= 0 total=3242 Number of alignments=878 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 2 :MVPGKVTLQKDAQ 1m5zA 19 :PVELHKVTLYKDS T0288 15 :NLIGISIGGGAQ 1m5zA 34 :EDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3246 Number of alignments=879 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0288 2 :MVPGKVTLQKDAQ 1m5zA 20 :VELHKVTLYKDSG T0288 15 :NLIGISIGGGAQ 1m5zA 34 :EDFGFSVADGLL T0288 28 :CPCLYIVQVFDNTPAALDG 1m5zA 46 :EKGVYVKNIRPAGPGDLGG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1m5zA 65 :LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR Number of specific fragments extracted= 4 number of extra gaps= 0 total=3250 Number of alignments=880 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1be9A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1be9A expands to /projects/compbio/data/pdb/1be9.pdb.gz 1be9A:# T0288 read from 1be9A/merged-a2m # 1be9A read from 1be9A/merged-a2m # adding 1be9A to template set # found chain 1be9A in template set T0288 1 :SMVPGKVTLQKDAQN 1be9A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1be9A 323 :LGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 0 total=3253 Number of alignments=881 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 1 :SMVPGKVTLQKDAQN 1be9A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1be9A 323 :LGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 3 number of extra gaps= 0 total=3256 Number of alignments=882 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 7 :VTLQKDAQN 1be9A 314 :IVIHRGSTG T0288 17 :IGISIGGGAQ 1be9A 323 :LGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII Number of specific fragments extracted= 3 number of extra gaps= 0 total=3259 Number of alignments=883 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 5 :GKVTLQKDAQN 1be9A 312 :RRIVIHRGSTG T0288 17 :IGISIGGGAQ 1be9A 323 :LGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII Number of specific fragments extracted= 3 number of extra gaps= 0 total=3262 Number of alignments=884 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 1 :SMVPGKVTLQKDA 1be9A 308 :PREPRRIVIHRGS T0288 15 :NLIGISIGGGAQ 1be9A 321 :TGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA T0288 86 :NKLQYYKV 1be9A 394 :PEEYSRFE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3266 Number of alignments=885 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 1 :SMVPGKVTLQKDA 1be9A 308 :PREPRRIVIHRGS T0288 15 :NLIGISIGGGAQ 1be9A 321 :TGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQ T0288 87 :KLQYYKV 1be9A 395 :EEYSRFE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3270 Number of alignments=886 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 7 :VTLQKDA 1be9A 314 :IVIHRGS T0288 15 :NLIGISIGGGAQ 1be9A 321 :TGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=3273 Number of alignments=887 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 6 :KVTLQKDA 1be9A 313 :RIVIHRGS T0288 15 :NLIGISIGGGAQ 1be9A 321 :TGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII Number of specific fragments extracted= 3 number of extra gaps= 0 total=3276 Number of alignments=888 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 1 :SMVPGKVTLQK 1be9A 308 :PREPRRIVIHR T0288 13 :AQNLIGISIGGGAQ 1be9A 319 :GSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE T0288 91 :Y 1be9A 400 :F Number of specific fragments extracted= 4 number of extra gaps= 0 total=3280 Number of alignments=889 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 4 :PGKVTLQK 1be9A 311 :PRRIVIHR T0288 13 :AQNLIGISIGGGAQ 1be9A 319 :GSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA Number of specific fragments extracted= 3 number of extra gaps= 0 total=3283 Number of alignments=890 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1be9A 336 :IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=3284 Number of alignments=891 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 17 :IGISIGGGAQ 1be9A 323 :LGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=3286 Number of alignments=892 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 1 :SMVPGKVTLQKDAQN 1be9A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1be9A 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1be9A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEE T0288 92 :KV 1be9A 414 :TN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3290 Number of alignments=893 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 1 :SMVPGKVTLQKDAQN 1be9A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1be9A 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1be9A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEE T0288 92 :KV 1be9A 414 :TN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3294 Number of alignments=894 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 2 :MVPGKVTLQKDAQN 1be9A 309 :REPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1be9A 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 1be9A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQ T0288 92 :KV 1be9A 414 :TN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3298 Number of alignments=895 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 3 :VPGKVTLQKDAQN 1be9A 310 :EPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1be9A 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1be9A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0288 92 :KV 1be9A 414 :TN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3302 Number of alignments=896 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 1 :SMVPGKVTLQKDAQN 1be9A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1be9A 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1be9A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE Number of specific fragments extracted= 3 number of extra gaps= 0 total=3305 Number of alignments=897 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 3 :VPGKVTLQKDAQN 1be9A 310 :EPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1be9A 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1be9A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3308 Number of alignments=898 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 2 :MVPGKVTLQKDAQN 1be9A 309 :REPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1be9A 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1be9A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 3 number of extra gaps= 0 total=3311 Number of alignments=899 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 2 :MVPGKVTLQKDAQN 1be9A 309 :REPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1be9A 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1be9A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 3 number of extra gaps= 0 total=3314 Number of alignments=900 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 1 :SMVPGKVTLQKDAQN 1be9A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1be9A 323 :LGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII T0288 85 :YNKLQYYKV 1be9A 407 :NSSGRIVTN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3318 Number of alignments=901 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 1 :SMVPGKVTLQKDAQN 1be9A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1be9A 323 :LGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII T0288 85 :YNKLQYYKV 1be9A 407 :NSSGRIVTN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3322 Number of alignments=902 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 2 :MVPGKVTLQKDAQN 1be9A 309 :REPRRIVIHRGSTG T0288 17 :IGISIGGGAQY 1be9A 323 :LGFNIIGGEDG T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1be9A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII T0288 85 :YNKLQYYKV 1be9A 407 :NSSGRIVTN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3326 Number of alignments=903 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 3 :VPGKVTLQKDAQN 1be9A 310 :EPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1be9A 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1be9A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII T0288 85 :YNKLQYYKV 1be9A 407 :NSSGRIVTN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3330 Number of alignments=904 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 1 :SMVPGKVTLQKDAQN 1be9A 308 :PREPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1be9A 323 :LGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII T0288 85 :YNKLQYY 1be9A 394 :PEEYSRF Number of specific fragments extracted= 4 number of extra gaps= 0 total=3334 Number of alignments=905 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 3 :VPGKVTLQKDAQN 1be9A 310 :EPRRIVIHRGSTG T0288 17 :IGISIGGGAQ 1be9A 323 :LGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII T0288 85 :YNK 1be9A 394 :PEE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3338 Number of alignments=906 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 2 :MVPGKVTLQKDAQN 1be9A 309 :REPRRIVIHRGSTG T0288 17 :IGISIGGGAQY 1be9A 323 :LGFNIIGGEDG T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1be9A 334 :EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII Number of specific fragments extracted= 3 number of extra gaps= 0 total=3341 Number of alignments=907 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 2 :MVPGKVTLQKDAQN 1be9A 309 :REPRRIVIHRGSTG T0288 17 :IGISIGGGAQYC 1be9A 323 :LGFNIIGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1be9A 335 :GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII Number of specific fragments extracted= 3 number of extra gaps= 0 total=3344 Number of alignments=908 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set Warning: unaligning (T0288)G5 because first residue in template chain is (1be9A)F301 T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1be9A 312 :RRIVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=3346 Number of alignments=909 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set Warning: unaligning (T0288)G5 because first residue in template chain is (1be9A)F301 T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1be9A 312 :RRIVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=3348 Number of alignments=910 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3350 Number of alignments=911 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0288 89 :QYY 1be9A 402 :ANS Number of specific fragments extracted= 3 number of extra gaps= 0 total=3353 Number of alignments=912 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 8 :TLQKDAQNLIGISIGGGAQ 1be9A 314 :IVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=3355 Number of alignments=913 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1be9A 312 :RRIVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA Number of specific fragments extracted= 2 number of extra gaps= 0 total=3357 Number of alignments=914 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1be9A 309 :REPRRIVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3359 Number of alignments=915 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1be9A 309 :REPRRIVIHRGSTGLGFNIIGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1be9A 333 :GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3361 Number of alignments=916 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1d5gA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1d5gA expands to /projects/compbio/data/pdb/1d5g.pdb.gz 1d5gA:# T0288 read from 1d5gA/merged-a2m # 1d5gA read from 1d5gA/merged-a2m # adding 1d5gA to template set # found chain 1d5gA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0288)Y27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0288)G79 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0288)E80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0288 16 :LIGISIGGGA 1d5gA 17 :SLGISVTGGV T0288 28 :C 1d5gA 29 :S T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1d5gA 33 :GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0288 81 :VTIHYNKLQ 1d5gA 85 :VHLLLEKGQ Number of specific fragments extracted= 4 number of extra gaps= 3 total=3365 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0288)Y27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 T0288 16 :LIGISIGGGA 1d5gA 17 :SLGISVTGGV T0288 28 :C 1d5gA 29 :S T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 1d5gA 33 :GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR Number of specific fragments extracted= 3 number of extra gaps= 2 total=3368 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0288)A13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0288)Y27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0288)G79 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0288)E80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0288 1 :SMVPGKVTLQKD 1d5gA 3 :PGDIFEVELAKN T0288 15 :N 1d5gA 17 :S T0288 17 :IGISIGGGA 1d5gA 18 :LGISVTGGV T0288 28 :CP 1d5gA 29 :SV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1d5gA 34 :GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0288 81 :VTIHYNKLQYY 1d5gA 85 :VHLLLEKGQSP Number of specific fragments extracted= 6 number of extra gaps= 3 total=3374 Number of alignments=917 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0288)A13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0288)Y27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0288)G79 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0288)E80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0288 1 :SMVPGKVTLQKD 1d5gA 3 :PGDIFEVELAKN T0288 15 :N 1d5gA 17 :S T0288 17 :IGISIGGGA 1d5gA 18 :LGISVTGGV T0288 28 :CP 1d5gA 29 :SV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1d5gA 34 :GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0288 81 :VTIHYNKLQYY 1d5gA 85 :VHLLLEKGQSP Number of specific fragments extracted= 6 number of extra gaps= 3 total=3380 Number of alignments=918 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0288)A13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0288)Y27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0288)G79 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0288)E80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0288 4 :PGKVTLQKD 1d5gA 6 :IFEVELAKN T0288 15 :N 1d5gA 17 :S T0288 17 :IGISIGGGA 1d5gA 18 :LGISVTGGV T0288 28 :CP 1d5gA 29 :SV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1d5gA 34 :GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0288 81 :VTIHYNKLQYY 1d5gA 85 :VHLLLEKGQSP Number of specific fragments extracted= 6 number of extra gaps= 3 total=3386 Number of alignments=919 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0288)A13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0288)Y27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0288)G79 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0288)E80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0288 4 :PGKVTLQKD 1d5gA 6 :IFEVELAKN T0288 15 :N 1d5gA 17 :S T0288 17 :IGISIGGGA 1d5gA 18 :LGISVTGGV T0288 28 :CP 1d5gA 29 :SV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1d5gA 34 :GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0288 81 :VTIHYNKL 1d5gA 85 :VHLLLEKG Number of specific fragments extracted= 6 number of extra gaps= 3 total=3392 Number of alignments=920 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0288)A13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0288)Y27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0288)G79 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0288)E80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 Warning: unaligning (T0288)K92 because last residue in template chain is (1d5gA)T96 T0288 1 :SMVPGKVTLQKD 1d5gA 3 :PGDIFEVELAKN T0288 15 :N 1d5gA 17 :S T0288 17 :IGISIGGGA 1d5gA 18 :LGISVTGGV T0288 28 :CP 1d5gA 29 :SV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1d5gA 34 :GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0288 81 :VTIHYNKLQYY 1d5gA 85 :VHLLLEKGQSP Number of specific fragments extracted= 6 number of extra gaps= 3 total=3398 Number of alignments=921 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0288)A13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0288)Y27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0288)G79 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0288)E80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 Warning: unaligning (T0288)K92 because last residue in template chain is (1d5gA)T96 T0288 1 :SMVPGKVTLQKD 1d5gA 3 :PGDIFEVELAKN T0288 15 :N 1d5gA 17 :S T0288 17 :IGISIGGGA 1d5gA 18 :LGISVTGGV T0288 28 :CP 1d5gA 29 :SV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1d5gA 34 :GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0288 81 :VTIHYNKLQYY 1d5gA 85 :VHLLLEKGQSP Number of specific fragments extracted= 6 number of extra gaps= 3 total=3404 Number of alignments=922 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0288)A13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0288)Y27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0288)G79 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0288)E80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0288 6 :KVTLQKD 1d5gA 8 :EVELAKN T0288 15 :N 1d5gA 17 :S T0288 17 :IGISIGGGA 1d5gA 18 :LGISVTGGV T0288 28 :CP 1d5gA 29 :SV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1d5gA 34 :GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0288 81 :VTIH 1d5gA 85 :VHLL Number of specific fragments extracted= 6 number of extra gaps= 3 total=3410 Number of alignments=923 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0288)A13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0288)Y27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)T28 Warning: unaligning (T0288)G79 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0288)E80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0288 5 :GKVTLQKD 1d5gA 7 :FEVELAKN T0288 15 :N 1d5gA 17 :S T0288 17 :IGISIGGGA 1d5gA 18 :LGISVTGGV T0288 28 :CP 1d5gA 29 :SV T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1d5gA 34 :GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0288 81 :VTIHYNK 1d5gA 85 :VHLLLEK Number of specific fragments extracted= 6 number of extra gaps= 3 total=3416 Number of alignments=924 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0288)G79 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0288)E80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 Warning: unaligning (T0288)K92 because last residue in template chain is (1d5gA)T96 T0288 1 :SMV 1d5gA 1 :PKP T0288 4 :PGKVTLQKDA 1d5gA 5 :DIFEVELAKN T0288 16 :LIGISIGGGA 1d5gA 17 :SLGISVTGGV T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1d5gA 31 :RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0288 81 :VTIHYNKLQYY 1d5gA 85 :VHLLLEKGQSP Number of specific fragments extracted= 5 number of extra gaps= 3 total=3421 Number of alignments=925 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0288)G79 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0288)E80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 Warning: unaligning (T0288)K92 because last residue in template chain is (1d5gA)T96 T0288 1 :SM 1d5gA 1 :PK T0288 3 :VPGKVTLQKDA 1d5gA 4 :GDIFEVELAKN T0288 16 :LIGISIGGGA 1d5gA 17 :SLGISVTGGV T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1d5gA 31 :RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0288 81 :VTIHYNKLQYY 1d5gA 85 :VHLLLEKGQSP Number of specific fragments extracted= 5 number of extra gaps= 3 total=3426 Number of alignments=926 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0288)G79 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0288)E80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0288 1 :SMVPGKVTLQKDA 1d5gA 2 :KPGDIFEVELAKN T0288 16 :LIGISIGGGA 1d5gA 17 :SLGISVTGGV T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1d5gA 31 :RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0288 81 :VTI 1d5gA 85 :VHL Number of specific fragments extracted= 4 number of extra gaps= 3 total=3430 # 1d5gA read from 1d5gA/merged-a2m # found chain 1d5gA in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)N16 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)N16 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)T28 Warning: unaligning (T0288)G79 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1d5gA)V84 Warning: unaligning (T0288)E80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1d5gA)V84 T0288 5 :GKVTLQKDA 1d5gA 6 :IFEVELAKN T0288 16 :LIGISIGGGA 1d5gA 17 :SLGISVTGGV T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 1d5gA 31 :RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG T0288 81 :VTIHY 1d5gA 85 :VHLLL Number of specific fragments extracted= 4 number of extra gaps= 3 total=3434 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1x6dA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0288/1x6dA/merged-a2m or /projects/compbio/experiments/protein-predict/casp7/T0288/1x6dA/merged-a2m.gz for input Trying 1x6dA/merged-a2m Error: Couldn't open file 1x6dA/merged-a2m or 1x6dA/merged-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1te0A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1te0A expands to /projects/compbio/data/pdb/1te0.pdb.gz 1te0A:# T0288 read from 1te0A/merged-a2m # 1te0A read from 1te0A/merged-a2m # adding 1te0A to template set # found chain 1te0A in template set Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0288)P4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0288)T8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0288)L9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)H71 Warning: unaligning (T0288)Q10 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)N72 Warning: unaligning (T0288)K11 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q73 Warning: unaligning (T0288)D12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L74 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0288)K92 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 Warning: unaligning (T0288)V93 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0288 1 :SM 1te0A 63 :NR T0288 5 :GKV 1te0A 67 :NTN T0288 13 :AQN 1te0A 75 :EIR T0288 20 :SIGGGAQYC 1te0A 78 :TLGSGVIMD T0288 31 :LYI 1te0A 282 :IVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GKTKVEVAKMIQEVKGEVTIHYNKLQYY 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 10 number of extra gaps= 9 total=3444 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)I168 Warning: unaligning (T0288)K6 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I173 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I173 Warning: unaligning (T0288)L9 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)L190 Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)S219 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)S219 Warning: unaligning (T0288)G24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)F220 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D221 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)K222 Warning: unaligning (T0288)C28 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D225 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0288)Y90 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 T0288 3 :VPG 1te0A 169 :TQG T0288 8 :T 1te0A 174 :S T0288 10 :Q 1te0A 191 :Q T0288 11 :KDAQNLIGISI 1te0A 207 :NSLGELMGINT T0288 27 :Y 1te0A 223 :S T0288 29 :PCLYI 1te0A 280 :QGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GKTKVEVAKMIQEVKGEVTIHYN 1te0A 314 :SALETMDQVAEIRPGSVIPVVVM T0288 87 :KL 1te0A 350 :EY Number of specific fragments extracted= 12 number of extra gaps= 11 total=3456 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 31 :LYI 1te0A 282 :IVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GKTKVEVAKMIQEVKGEVTIHY 1te0A 314 :SALETMDQVAEIRPGSVIPVVV Number of specific fragments extracted= 6 number of extra gaps= 5 total=3462 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GKTKVEVAKMIQEVKGEVTI 1te0A 314 :SALETMDQVAEIRPGSVIPV Number of specific fragments extracted= 6 number of extra gaps= 5 total=3468 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)T135 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)T135 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)T47 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 Warning: unaligning (T0288)Y90 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0288 1 :SMVPGKVTLQKDAQNLIGISIG 1te0A 112 :RVFEALLVGSDSLTDLAVLIIK T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GKTKVEVAKMIQEVKGEVTIHY 1te0A 314 :SALETMDQVAEIRPGSVIPVVV T0288 86 :NKL 1te0A 339 :DKQ T0288 91 :YKV 1te0A 344 :LQV Number of specific fragments extracted= 9 number of extra gaps= 8 total=3477 Number of alignments=927 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)S219 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)S219 Warning: unaligning (T0288)G24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)F220 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D221 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)T47 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 Warning: unaligning (T0288)Y90 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 T0288 1 :SMVPGKVTLQKDA 1te0A 112 :RVFEALLVGSDSL T0288 14 :QNLIGISI 1te0A 210 :GELMGINT T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GKTKVEVAKMIQEVKGEVTIHY 1te0A 314 :SALETMDQVAEIRPGSVIPVVV T0288 86 :NKL 1te0A 339 :DKQ T0288 91 :YKV 1te0A 344 :LQV Number of specific fragments extracted= 10 number of extra gaps= 8 total=3487 Number of alignments=928 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)T47 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 31 :LYI 1te0A 282 :IVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GKTKVEVAKMIQEVKGEVTIHYNK 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMR Number of specific fragments extracted= 6 number of extra gaps= 5 total=3493 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)T47 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GKTKVEVAKMIQEVKGEVTIH 1te0A 314 :SALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 6 number of extra gaps= 6 total=3499 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA Number of specific fragments extracted= 3 number of extra gaps= 4 total=3502 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3502 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)G18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0288)I19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0288)G24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0288)P29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0288)V81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 Warning: unaligning (T0288)T82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0288)Y91 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0288)K92 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0288)V93 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0288 1 :SMVPGKVTLQKDAQNLI 1te0A 41 :DETPASYNLAVRRAAPA T0288 20 :SIGG 1te0A 60 :NVYN T0288 26 :QYC 1te0A 67 :NTN T0288 30 :CLYI 1te0A 281 :GIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GK 1te0A 314 :SA T0288 66 :TKVEVAKMIQEV 1te0A 318 :TMDQVAEIRPGS T0288 78 :KGE 1te0A 339 :DKQ T0288 83 :IHYNKLQY 1te0A 344 :LQVTIQEY Number of specific fragments extracted= 12 number of extra gaps= 10 total=3514 Number of alignments=929 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)K6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0288)V7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0288)G18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0288)I19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0288)K92 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0288)V93 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0288 1 :SMVPG 1te0A 53 :RAAPA T0288 8 :TLQK 1te0A 60 :NVYN T0288 17 :I 1te0A 64 :R T0288 20 :SIG 1te0A 67 :NTN T0288 30 :CLYI 1te0A 281 :GIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GK 1te0A 314 :SA T0288 66 :TKVEVAKM 1te0A 318 :TMDQVAEI T0288 78 :KGEVTIHYNKLQYY 1te0A 328 :GSVIPVVVMRDDKQ Number of specific fragments extracted= 12 number of extra gaps= 9 total=3526 Number of alignments=930 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)I17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0288)P29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0288)K92 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0288)V93 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0288 1 :SMVP 1te0A 37 :FDST T0288 13 :A 1te0A 44 :P T0288 18 :GISIG 1te0A 60 :NVYNR T0288 26 :QYC 1te0A 67 :NTN T0288 30 :CLYI 1te0A 281 :GIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 66 :TKVEVAKMIQEV 1te0A 314 :SALETMDQVAEI T0288 78 :KGEVTIHYNKLQYY 1te0A 328 :GSVIPVVVMRDDKQ Number of specific fragments extracted= 11 number of extra gaps= 9 total=3537 Number of alignments=931 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)K6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0288)V7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0288)K92 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0288)V93 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0288 1 :SM 1te0A 37 :FD T0288 8 :TLQK 1te0A 60 :NVYN T0288 12 :DAQ 1te0A 67 :NTN T0288 16 :LIGISIGGG 1te0A 78 :TLGSGVIMD T0288 28 :CP 1te0A 89 :GY T0288 30 :CLYI 1te0A 281 :GIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 66 :TKVEVAKMIQEV 1te0A 314 :SALETMDQVAEI T0288 78 :KGEVTIHYNKLQYY 1te0A 328 :GSVIPVVVMRDDKQ Number of specific fragments extracted= 12 number of extra gaps= 9 total=3549 Number of alignments=932 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GK 1te0A 314 :SA Number of specific fragments extracted= 6 number of extra gaps= 6 total=3555 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GK 1te0A 314 :SA T0288 68 :VEVAKMIQEV 1te0A 316 :LETMDQVAEI T0288 78 :KGEVTIHY 1te0A 328 :GSVIPVVV Number of specific fragments extracted= 8 number of extra gaps= 6 total=3563 Number of alignments=933 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 13 :A 1te0A 271 :A T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 66 :TKVEVAKMIQEV 1te0A 314 :SALETMDQVAEI T0288 78 :KGEVTIHYNKLQYY 1te0A 328 :GSVIPVVVMRDDKQ Number of specific fragments extracted= 8 number of extra gaps= 6 total=3571 Number of alignments=934 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 12 :DA 1te0A 270 :HA T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 66 :TKVEVAKMIQEV 1te0A 314 :SALETMDQVAEI T0288 78 :KGEVTIHYNKLQY 1te0A 328 :GSVIPVVVMRDDK Number of specific fragments extracted= 8 number of extra gaps= 6 total=3579 Number of alignments=935 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)G18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0288)I19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0288)G24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0288)P29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0288)V81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 Warning: unaligning (T0288)T82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)T343 Warning: unaligning (T0288)Y91 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0288)K92 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0288)V93 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0288 1 :SMVPGKVTLQKDAQNLI 1te0A 41 :DETPASYNLAVRRAAPA T0288 20 :SIG 1te0A 60 :NVY T0288 23 :G 1te0A 64 :R T0288 26 :QYC 1te0A 67 :NTN T0288 30 :CLYI 1te0A 281 :GIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GK 1te0A 314 :SA T0288 66 :TKVEVAKMIQEV 1te0A 318 :TMDQVAEIRPGS T0288 78 :KGE 1te0A 339 :DKQ T0288 83 :IHYNKLQY 1te0A 344 :LQVTIQEY Number of specific fragments extracted= 13 number of extra gaps= 10 total=3592 Number of alignments=936 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)K6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0288)V7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0288)G18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0288)I19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0288)Y91 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0288)K92 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0288)V93 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0288 1 :SMVPG 1te0A 53 :RAAPA T0288 8 :TLQK 1te0A 60 :NVYN T0288 17 :I 1te0A 64 :R T0288 20 :SIG 1te0A 67 :NTN T0288 30 :CLYI 1te0A 281 :GIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GK 1te0A 314 :SA T0288 66 :TKVEVAKMIQEV 1te0A 318 :TMDQVAEIRPGS T0288 79 :GEV 1te0A 332 :PVV T0288 85 :YNKLQY 1te0A 346 :VTIQEY Number of specific fragments extracted= 13 number of extra gaps= 9 total=3605 Number of alignments=937 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)I17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0288)G24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0288)P29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0288)Y91 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0288)K92 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0288)V93 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0288 1 :SMVP 1te0A 37 :FDST T0288 18 :GISIG 1te0A 60 :NVYNR T0288 26 :QYC 1te0A 67 :NTN T0288 30 :CLYI 1te0A 281 :GIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 66 :TKVEVAKMIQEV 1te0A 314 :SALETMDQVAEI T0288 78 :KGEVTIH 1te0A 328 :GSVIPVV T0288 86 :NKLQY 1te0A 347 :TIQEY Number of specific fragments extracted= 11 number of extra gaps= 9 total=3616 Number of alignments=938 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)V7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0288)Y91 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0288)K92 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0288)V93 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0288 1 :SMVP 1te0A 37 :FDST T0288 8 :TLQK 1te0A 60 :NVYN T0288 13 :AQ 1te0A 68 :TN T0288 16 :LIGISIGGG 1te0A 78 :TLGSGVIMD T0288 28 :CP 1te0A 89 :GY T0288 30 :CLYI 1te0A 281 :GIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 66 :TKVEVAKMIQEV 1te0A 314 :SALETMDQVAEI T0288 78 :KGEVTIH 1te0A 328 :GSVIPVV T0288 86 :NKLQY 1te0A 347 :TIQEY Number of specific fragments extracted= 13 number of extra gaps= 9 total=3629 Number of alignments=939 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GK 1te0A 314 :SA Number of specific fragments extracted= 6 number of extra gaps= 6 total=3635 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GK 1te0A 314 :SA Number of specific fragments extracted= 6 number of extra gaps= 6 total=3641 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0288)Y91 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 T0288 13 :A 1te0A 271 :A T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 66 :TKVEVAKMIQEV 1te0A 314 :SALETMDQVAEI T0288 78 :KGEVTIH 1te0A 328 :GSVIPVV T0288 86 :NKLQY 1te0A 337 :RDDKQ Number of specific fragments extracted= 9 number of extra gaps= 7 total=3650 Number of alignments=940 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0288)Y90 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)T343 T0288 8 :TLQK 1te0A 262 :GGRE T0288 12 :DA 1te0A 270 :HA T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 66 :TKVEVAKMIQEV 1te0A 314 :SALETMDQVAEI T0288 78 :KGEVTIH 1te0A 328 :GSVIPVV T0288 85 :YNKLQ 1te0A 337 :RDDKQ Number of specific fragments extracted= 10 number of extra gaps= 7 total=3660 Number of alignments=941 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)V7 because first residue in template chain is (1te0A)F37 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 8 :TLQKDAQNLIGISIGGGAQ 1te0A 38 :DSTDETPASYNLAVRRAAP T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GK 1te0A 314 :SA T0288 68 :VEVAKMIQEVKGEVTIHYNKLQYYKV 1te0A 316 :LETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 8 number of extra gaps= 5 total=3668 Number of alignments=942 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 1 :SMV 1te0A 37 :FDS T0288 10 :QKDAQNLIGISIGGGAQ 1te0A 40 :TDETPASYNLAVRRAAP T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GK 1te0A 314 :SA T0288 66 :TKVEVAKM 1te0A 318 :TMDQVAEI T0288 78 :KGEVTIHYNKLQYYKV 1te0A 326 :RPGSVIPVVVMRDDKQ Number of specific fragments extracted= 10 number of extra gaps= 5 total=3678 Number of alignments=943 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)Q10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0288)K11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 1 :SMVP 1te0A 37 :FDST T0288 6 :KVTL 1te0A 61 :VYNR T0288 12 :DAQ 1te0A 67 :NTN T0288 16 :LIGISIGGG 1te0A 78 :TLGSGVIMD T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 66 :TKVEVAKMIQEVKGEVTIHYNKLQYYKV 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 10 number of extra gaps= 8 total=3688 Number of alignments=944 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0288)V3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0288)L9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0288)Q10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)H71 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 1 :S 1te0A 37 :F T0288 4 :PGKVT 1te0A 60 :NVYNR T0288 11 :KDA 1te0A 67 :NTN T0288 16 :LIGISIGGG 1te0A 78 :TLGSGVIMD T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 66 :TKVEVAKMIQEVKGEVTIHYNKLQYYKV 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 10 number of extra gaps= 9 total=3698 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP Number of specific fragments extracted= 5 number of extra gaps= 5 total=3703 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 64 :GK 1te0A 314 :SA T0288 68 :VEVAKMIQEV 1te0A 316 :LETMDQVAEI Number of specific fragments extracted= 7 number of extra gaps= 6 total=3710 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 66 :TKVEVAKMIQEVKGEVTIHYNKLQYYKV 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 6 number of extra gaps= 6 total=3716 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0288)Q14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0288)N15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0288)A25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0288)Q26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0288)V34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0288)Q35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0288)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0288)T40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0288)A43 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0288)L44 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0288)D45 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0288)G46 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0288)D52 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0288)E53 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0288)I62 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0288)K63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0288 12 :DA 1te0A 270 :HA T0288 27 :YCPCLYI 1te0A 278 :QLQGIVV T0288 36 :VFD 1te0A 287 :VSP T0288 41 :PA 1te0A 292 :PA T0288 48 :VAAG 1te0A 298 :IQVN T0288 54 :ITGVNGRS 1te0A 304 :IISVDNKP T0288 66 :TKVEVAKMIQEVKGEVTIHYNKLQYYK 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDK Number of specific fragments extracted= 7 number of extra gaps= 6 total=3723 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fcfA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2fcfA/merged-a2m # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)Q14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 15 :N 2fcfA 1161 :S T0288 17 :IGISIGGG 2fcfA 1162 :LGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3727 Number of alignments=945 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)Q14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 15 :N 2fcfA 1161 :S T0288 17 :IGISIGGG 2fcfA 1162 :LGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3731 Number of alignments=946 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)Q14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0288 7 :VTLQKD 2fcfA 1152 :VELWRE T0288 15 :N 2fcfA 1161 :S T0288 17 :IGISIGGG 2fcfA 1162 :LGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVF Number of specific fragments extracted= 4 number of extra gaps= 0 total=3735 Number of alignments=947 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)Q14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0288 6 :KVTLQKD 2fcfA 1151 :RVELWRE T0288 15 :N 2fcfA 1161 :S T0288 17 :IGISIGGG 2fcfA 1162 :LGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS Number of specific fragments extracted= 4 number of extra gaps= 0 total=3739 Number of alignments=948 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)G5 because first residue in template chain is (2fcfA)Q1145 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 6 :K 2fcfA 1146 :S T0288 7 :VTLQKDAQN 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=3742 Number of alignments=949 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :S 2fcfA 1145 :Q T0288 6 :K 2fcfA 1146 :S T0288 7 :VTLQKDAQN 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=3746 Number of alignments=950 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3747 Number of alignments=951 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 15 :N 2fcfA 1169 :G T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVF Number of specific fragments extracted= 2 number of extra gaps= 1 total=3749 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVF Number of specific fragments extracted= 3 number of extra gaps= 0 total=3752 Number of alignments=952 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPV Number of specific fragments extracted= 3 number of extra gaps= 0 total=3755 Number of alignments=953 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=3758 Number of alignments=954 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=3761 Number of alignments=955 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVP 2fcfA 1145 :QSMQ T0288 5 :GKVTLQKD 2fcfA 1150 :RRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=3765 Number of alignments=956 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVP 2fcfA 1145 :QSMQ T0288 5 :GKVTLQKD 2fcfA 1150 :RRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=3769 Number of alignments=957 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS Number of specific fragments extracted= 3 number of extra gaps= 1 total=3772 Number of alignments=958 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 2 :MVPGKVTLQKD 2fcfA 1147 :MQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI Number of specific fragments extracted= 3 number of extra gaps= 1 total=3775 Number of alignments=959 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=3778 Number of alignments=960 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=3781 Number of alignments=961 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=3784 Number of alignments=962 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=3787 Number of alignments=963 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVP 2fcfA 1145 :QSMQ T0288 5 :GKVTLQKD 2fcfA 1150 :RRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=3791 Number of alignments=964 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVP 2fcfA 1145 :QSMQ T0288 5 :GKVTLQKD 2fcfA 1150 :RRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=3795 Number of alignments=965 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFM Number of specific fragments extracted= 3 number of extra gaps= 1 total=3798 Number of alignments=966 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 2 :MVPGKVTLQKD 2fcfA 1147 :MQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS Number of specific fragments extracted= 3 number of extra gaps= 1 total=3801 Number of alignments=967 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=3804 Number of alignments=968 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYK 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTR Number of specific fragments extracted= 3 number of extra gaps= 1 total=3807 Number of alignments=969 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=3810 Number of alignments=970 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMV 2fcfA 1145 :QSM T0288 4 :PGKVTLQKD 2fcfA 1149 :PRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=3814 Number of alignments=971 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQK 2fcfA 1145 :QSMQPRRVELW T0288 12 :D 2fcfA 1157 :E T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=3818 Number of alignments=972 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQK 2fcfA 1145 :QSMQPRRVELW T0288 12 :D 2fcfA 1157 :E T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=3822 Number of alignments=973 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVF Number of specific fragments extracted= 3 number of extra gaps= 1 total=3825 Number of alignments=974 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 5 :GKVTLQKD 2fcfA 1150 :RRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV Number of specific fragments extracted= 3 number of extra gaps= 1 total=3828 Number of alignments=975 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 1 :SMVPGKVTLQKD 2fcfA 1146 :SMQPRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=3831 Number of alignments=976 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0288)A13 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0288)N15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0288)Q26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0288 4 :PGKVTLQKD 2fcfA 1149 :PRRVELWRE T0288 16 :LIGISIGGG 2fcfA 1161 :SLGISIVGG T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 2fcfA 1185 :IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=3834 Number of alignments=977 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rgrA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rgrA expands to /projects/compbio/data/pdb/1rgr.pdb.gz 1rgrA:# T0288 read from 1rgrA/merged-a2m # 1rgrA read from 1rgrA/merged-a2m # adding 1rgrA to template set # found chain 1rgrA in template set Warning: unaligning (T0288)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0288)K65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0288 17 :IGIS 1rgrA 75 :LGFS T0288 24 :GAQY 1rgrA 82 :GTDN T0288 29 :PCLYIVQVFDNTPAALDGT 1rgrA 92 :PSIFITKIIPGGAAAQDGR T0288 50 :AGDEITGVNGRSIKG 1rgrA 113 :VNDSILFVNEVDVRE T0288 67 :KVEVAKMIQEVKGEVTIH 1rgrA 130 :HSAAVEALKEAGSIVRLY Number of specific fragments extracted= 5 number of extra gaps= 4 total=3839 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0288)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0288)K65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0288 15 :NLIGIS 1rgrA 73 :SGLGFS T0288 24 :GAQY 1rgrA 82 :GTDN T0288 29 :PCLYIVQVFDNTPAALDGT 1rgrA 92 :PSIFITKIIPGGAAAQDGR T0288 50 :AGDEITGVNGRSIKG 1rgrA 113 :VNDSILFVNEVDVRE T0288 67 :KVEVAKMIQEV 1rgrA 130 :HSAAVEALKEA Number of specific fragments extracted= 5 number of extra gaps= 3 total=3844 Number of alignments=978 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0288)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0288)P29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0288)K65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 Warning: unaligning (T0288)Y91 because last residue in template chain is (1rgrA)P154 T0288 1 :SMV 1rgrA 62 :EYE T0288 6 :KVTLQKDAQN 1rgrA 65 :EITLERGNSG T0288 17 :IGIS 1rgrA 75 :LGFS T0288 24 :GAQY 1rgrA 82 :GTDN T0288 30 :CLYIVQVFDNTPAALDGT 1rgrA 93 :SIFITKIIPGGAAAQDGR T0288 50 :AGDEITGVNGRSIKG 1rgrA 113 :VNDSILFVNEVDVRE T0288 67 :KVEVAKMIQEVKGEVTIHYNKLQY 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 7 number of extra gaps= 4 total=3851 Number of alignments=979 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0288)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0288)P29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0288)K65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 Warning: unaligning (T0288)Y91 because last residue in template chain is (1rgrA)P154 T0288 1 :SMV 1rgrA 62 :EYE T0288 6 :KVTLQKDAQN 1rgrA 65 :EITLERGNSG T0288 17 :IGIS 1rgrA 75 :LGFS T0288 24 :GAQY 1rgrA 82 :GTDN T0288 30 :CLYIVQVFDNTPAALDGT 1rgrA 93 :SIFITKIIPGGAAAQDGR T0288 50 :AGDEITGVNGRSIKG 1rgrA 113 :VNDSILFVNEVDVRE T0288 67 :KVEVAKMIQEVKGEVTIHYNKLQY 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 7 number of extra gaps= 4 total=3858 Number of alignments=980 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0288)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0288)P29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0288)K65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 Warning: unaligning (T0288)Y91 because last residue in template chain is (1rgrA)P154 T0288 4 :PGKVTLQKDAQN 1rgrA 63 :YEEITLERGNSG T0288 17 :IGIS 1rgrA 75 :LGFS T0288 24 :GAQY 1rgrA 82 :GTDN T0288 30 :CLYIVQVFDNTPAALDGT 1rgrA 93 :SIFITKIIPGGAAAQDGR T0288 50 :AGDEITGVNGRSIKG 1rgrA 113 :VNDSILFVNEVDVRE T0288 67 :KVEVAKMIQEVKGEVTIHYNKLQY 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 6 number of extra gaps= 4 total=3864 Number of alignments=981 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0288)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0288)P29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0288)K65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0288 5 :GKVTLQKDAQN 1rgrA 64 :EEITLERGNSG T0288 17 :IGIS 1rgrA 75 :LGFS T0288 24 :GAQY 1rgrA 82 :GTDN T0288 30 :CLYIVQVFDNTPAALDGT 1rgrA 93 :SIFITKIIPGGAAAQDGR T0288 50 :AGDEITGVNGRSIKG 1rgrA 113 :VNDSILFVNEVDVRE T0288 67 :KVEVAKMIQEVKGEVTIHYNKL 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRR Number of specific fragments extracted= 6 number of extra gaps= 4 total=3870 Number of alignments=982 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0288)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0288)P29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0288)K65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 Warning: unaligning (T0288)K87 because last residue in template chain is (1rgrA)P154 T0288 1 :SMV 1rgrA 62 :EYE T0288 6 :KVTLQKDAQN 1rgrA 65 :EITLERGNSG T0288 17 :IGIS 1rgrA 75 :LGFS T0288 24 :GAQY 1rgrA 82 :GTDN T0288 30 :CLYIVQVFDNTPAALDGT 1rgrA 93 :SIFITKIIPGGAAAQDGR T0288 50 :AGDEITGVNGRSIKG 1rgrA 113 :VNDSILFVNEVDVRE T0288 67 :KVEVAKMIQEVKGEVTIH 1rgrA 130 :HSAAVEALKEAGSIVRLY T0288 85 :YN 1rgrA 152 :KP Number of specific fragments extracted= 8 number of extra gaps= 4 total=3878 Number of alignments=983 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0288)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0288)P29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0288)K65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 Warning: unaligning (T0288)K87 because last residue in template chain is (1rgrA)P154 T0288 1 :SMV 1rgrA 62 :EYE T0288 6 :KVTLQKDAQN 1rgrA 65 :EITLERGNSG T0288 17 :IGIS 1rgrA 75 :LGFS T0288 24 :GAQY 1rgrA 82 :GTDN T0288 30 :CLYIVQVFDNTPAALDGT 1rgrA 93 :SIFITKIIPGGAAAQDGR T0288 50 :AGDEITGVNGRSIKG 1rgrA 113 :VNDSILFVNEVDVRE T0288 67 :KVEVAKMIQEVKGEVTIH 1rgrA 130 :HSAAVEALKEAGSIVRLY T0288 86 :N 1rgrA 153 :P Number of specific fragments extracted= 8 number of extra gaps= 4 total=3886 Number of alignments=984 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0288)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0288)P29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0288)K65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0288 4 :PGKVTLQKDAQN 1rgrA 63 :YEEITLERGNSG T0288 17 :IGIS 1rgrA 75 :LGFS T0288 24 :GAQY 1rgrA 82 :GTDN T0288 30 :CLYIVQVFDNTPAALDGT 1rgrA 93 :SIFITKIIPGGAAAQDGR T0288 50 :AGDEITGVNGRSIKG 1rgrA 113 :VNDSILFVNEVDVRE T0288 67 :KVEVAKMIQEVKGEVTIH 1rgrA 130 :HSAAVEALKEAGSIVRLY Number of specific fragments extracted= 6 number of extra gaps= 4 total=3892 Number of alignments=985 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0288)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0288)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)H87 Warning: unaligning (T0288)P29 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)H87 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0288)K65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0288 5 :GKVTLQKDAQN 1rgrA 64 :EEITLERGNSG T0288 17 :IGIS 1rgrA 75 :LGFS T0288 24 :GAQY 1rgrA 82 :GTDN T0288 30 :CLYIVQVFDNTPAALDGT 1rgrA 93 :SIFITKIIPGGAAAQDGR T0288 50 :AGDEITGVNGRSIKG 1rgrA 113 :VNDSILFVNEVDVRE T0288 67 :KVEVAKMIQEVKGEVTIH 1rgrA 130 :HSAAVEALKEAGSIVRLY Number of specific fragments extracted= 6 number of extra gaps= 4 total=3898 Number of alignments=986 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0288)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0288)K65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 Warning: unaligning (T0288)Y91 because last residue in template chain is (1rgrA)P154 T0288 5 :GKVTLQKDAQNLIGIS 1rgrA 63 :YEEITLERGNSGLGFS T0288 24 :GAQ 1rgrA 82 :GTD T0288 27 :YCPCLYIVQVFDNTPAALDGT 1rgrA 90 :DDPSIFITKIIPGGAAAQDGR T0288 50 :AGDEITGVNGRSIKG 1rgrA 113 :VNDSILFVNEVDVRE T0288 67 :KVEVAKMIQEVKGEVTIHYNKLQY 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 5 number of extra gaps= 3 total=3903 Number of alignments=987 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0288)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0288)K65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 Warning: unaligning (T0288)Y91 because last residue in template chain is (1rgrA)P154 T0288 5 :GKVTLQKDAQNLIGIS 1rgrA 63 :YEEITLERGNSGLGFS T0288 24 :GAQ 1rgrA 82 :GTD T0288 27 :YCPCLYIVQVFDNTPAALDGT 1rgrA 90 :DDPSIFITKIIPGGAAAQDGR T0288 50 :AGDEITGVNGRSIKG 1rgrA 113 :VNDSILFVNEVDVRE T0288 67 :KVEVAKMIQEVKGEVTIHYNKLQY 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 5 number of extra gaps= 3 total=3908 Number of alignments=988 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0288)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0288)K65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0288 5 :GKVTLQKDAQNLIGIS 1rgrA 63 :YEEITLERGNSGLGFS T0288 24 :GAQ 1rgrA 82 :GTD T0288 27 :YCPCLYIVQVFDNTPAALDGT 1rgrA 90 :DDPSIFITKIIPGGAAAQDGR T0288 50 :AGDEITGVNGRSIKG 1rgrA 113 :VNDSILFVNEVDVRE T0288 67 :KVEVAKMIQEVKGEVTI 1rgrA 130 :HSAAVEALKEAGSIVRL Number of specific fragments extracted= 5 number of extra gaps= 3 total=3913 Number of alignments=989 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0288)I21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0288)G22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0288)G23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0288)V48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0288)A49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0288)K65 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0288 6 :KVTLQKDAQNLIGIS 1rgrA 64 :EEITLERGNSGLGFS T0288 24 :GAQ 1rgrA 82 :GTD T0288 27 :YCPCLYIVQVFDNTPAALDGT 1rgrA 90 :DDPSIFITKIIPGGAAAQDGR T0288 50 :AGDEITGVNGRSIKG 1rgrA 113 :VNDSILFVNEVDVRE T0288 67 :KVEVAKMIQEVKGEVTIHY 1rgrA 130 :HSAAVEALKEAGSIVRLYV Number of specific fragments extracted= 5 number of extra gaps= 3 total=3918 Number of alignments=990 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lcyA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1lcyA expands to /projects/compbio/data/pdb/1lcy.pdb.gz 1lcyA:# T0288 read from 1lcyA/merged-a2m # 1lcyA read from 1lcyA/merged-a2m # adding 1lcyA to template set # found chain 1lcyA in template set Warning: unaligning (T0288)K92 because last residue in template chain is (1lcyA)E325 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPC 1lcyA 28 :VVYIEILDRHPFLGREVPISNGSGFVVAAD T0288 31 :LYIVQVFDNTPAALDGTVA 1lcyA 258 :VLIHKVILGSPAHRAGLRP T0288 51 :GDEITGVNGRSIKGKTKV 1lcyA 277 :GDVILAIGEQMVQNAEDV T0288 69 :EVAKMIQEVKGEVTIHYNKLQYY 1lcyA 302 :SQLAVQIRRGRETLTLYVTPEVT Number of specific fragments extracted= 4 number of extra gaps= 0 total=3922 Number of alignments=991 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0288)K92 because last residue in template chain is (1lcyA)E325 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYC 1lcyA 28 :VVYIEILDRHPFLGREVPISNGSGFVVA T0288 29 :PCLYIVQVFDNTPAALDGTVA 1lcyA 256 :HGVLIHKVILGSPAHRAGLRP T0288 51 :GDEITGVNGRSIKGKTKVE 1lcyA 277 :GDVILAIGEQMVQNAEDVY T0288 70 :VAKMIQEVKGEVTIHYNKLQYY 1lcyA 303 :QLAVQIRRGRETLTLYVTPEVT Number of specific fragments extracted= 4 number of extra gaps= 0 total=3926 Number of alignments=992 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 7 :VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVA 1lcyA 234 :LTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRP T0288 51 :GDEITGVNGRSIKGKTKVEVAK 1lcyA 277 :GDVILAIGEQMVQNAEDVYEAV T0288 76 :EVKGEVTIHY 1lcyA 299 :RTQSQLAVQI Number of specific fragments extracted= 3 number of extra gaps= 0 total=3929 Number of alignments=993 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 11 :KDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVA 1lcyA 238 :PSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRP T0288 51 :GDEITGVNGRSIKGKTKVEVAK 1lcyA 277 :GDVILAIGEQMVQNAEDVYEAV T0288 76 :EVKGEVTI 1lcyA 299 :RTQSQLAV Number of specific fragments extracted= 3 number of extra gaps= 0 total=3932 Number of alignments=994 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1lcyA 228 :YIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQ 1lcyA 291 :AEDVYEAVR T0288 77 :VKGEVTIHY 1lcyA 300 :TQSQLAVQI T0288 86 :NKLQYYKV 1lcyA 312 :RETLTLYV Number of specific fragments extracted= 5 number of extra gaps= 0 total=3937 Number of alignments=995 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1lcyA 228 :YIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQ 1lcyA 291 :AEDVYEAVR T0288 77 :VKGEVTIHY 1lcyA 300 :TQSQLAVQI T0288 86 :NKLQYYKV 1lcyA 312 :RETLTLYV Number of specific fragments extracted= 5 number of extra gaps= 0 total=3942 Number of alignments=996 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 7 :VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1lcyA 234 :LTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQ 1lcyA 291 :AEDVYEAVR T0288 77 :VKGEVTIHYNK 1lcyA 300 :TQSQLAVQIRR Number of specific fragments extracted= 4 number of extra gaps= 0 total=3946 Number of alignments=997 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 7 :VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 1lcyA 234 :LTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQ 1lcyA 291 :AEDVYEAVR T0288 77 :VKGEVTIH 1lcyA 300 :TQSQLAVQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=3950 Number of alignments=998 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 39 :NTPAALDGTVAAG 1lcyA 128 :GSPFALQNTITSG Number of specific fragments extracted= 1 number of extra gaps= 0 total=3951 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3951 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1lcyA)E325 T0288 1 :SMVPGKVTLQK 1lcyA 23 :KTAPAVVYIEI T0288 12 :DAQNLIGISIGGGAQYCP 1lcyA 35 :DRHPFLGREVPISNGSGF T0288 30 :CLYIVQVFDNTPAALDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKGK 1lcyA 274 :LRPGDVILAIGEQMVQNA T0288 66 :TKVEVAKMIQEVKGEVTIHYNKLQY 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPEVT Number of specific fragments extracted= 5 number of extra gaps= 0 total=3956 Number of alignments=999 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 1 :SMVPGKVTLQK 1lcyA 23 :KTAPAVVYIEI T0288 12 :DAQNLIGISIGGGAQYCP 1lcyA 35 :DRHPFLGREVPISNGSGF T0288 30 :CLYIVQVFDNTPAALDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKGK 1lcyA 274 :LRPGDVILAIGEQMVQNA T0288 66 :TKVEVAKMIQEVKGEVTIHYNKLQ 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPEV T0288 92 :KV 1lcyA 324 :TE Number of specific fragments extracted= 6 number of extra gaps= 0 total=3962 Number of alignments=1000 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1lcyA)P6 T0288 4 :P 1lcyA 7 :P T0288 6 :KVTLQKDAQ 1lcyA 30 :YIEILDRHP T0288 17 :IGISIGGG 1lcyA 50 :SGFVVAAD T0288 30 :CLYIVQVFDNTPAALDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQEV 1lcyA 291 :AEDVYEAVRTQ T0288 79 :GEVTIHYNKLQYY 1lcyA 302 :SQLAVQIRRGRET T0288 92 :KV 1lcyA 324 :TE Number of specific fragments extracted= 8 number of extra gaps= 0 total=3970 Number of alignments=1001 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 1 :SMVP 1lcyA 6 :PPAS T0288 5 :GKVTLQKDAQN 1lcyA 29 :VYIEILDRHPF T0288 16 :LIGISIGGGA 1lcyA 49 :GSGFVVAADG T0288 26 :QYC 1lcyA 69 :DRR T0288 30 :CLYIVQVFDNTPAALDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQE 1lcyA 291 :AEDVYEAVRT T0288 78 :KGEVTIHYNKLQYY 1lcyA 301 :QSQLAVQIRRGRET Number of specific fragments extracted= 8 number of extra gaps= 0 total=3978 Number of alignments=1002 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 26 :QYCPCLYIVQVFDNTPAALDG 1lcyA 253 :DVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKGK 1lcyA 274 :LRPGDVILAIGEQMVQNA Number of specific fragments extracted= 2 number of extra gaps= 0 total=3980 Number of alignments=1003 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1lcyA 252 :PDVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKGK 1lcyA 274 :LRPGDVILAIGEQMVQNA T0288 68 :VEVAKMIQ 1lcyA 292 :EDVYEAVR Number of specific fragments extracted= 3 number of extra gaps= 0 total=3983 Number of alignments=1004 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1lcyA 252 :PDVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQE 1lcyA 291 :AEDVYEAVRT T0288 78 :KGEVTIHYNKLQY 1lcyA 301 :QSQLAVQIRRGRE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3987 Number of alignments=1005 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 13 :AQ 1lcyA 249 :PS T0288 24 :GAQYCPCLYIVQVFDNTPAALDG 1lcyA 251 :FPDVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQE 1lcyA 291 :AEDVYEAVRT T0288 78 :KGEVTIHYNKLQY 1lcyA 301 :QSQLAVQIRRGRE Number of specific fragments extracted= 5 number of extra gaps= 0 total=3992 Number of alignments=1006 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1lcyA)E325 T0288 1 :SMVPGKVTLQK 1lcyA 23 :KTAPAVVYIEI T0288 12 :DAQNLIGISIGGGAQYCP 1lcyA 35 :DRHPFLGREVPISNGSGF T0288 30 :CLYIVQVFDNTPAALDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKGK 1lcyA 274 :LRPGDVILAIGEQMVQNA T0288 66 :TKVEVAKMIQEVKGEVTIH 1lcyA 300 :TQSQLAVQIRRGRETLTLY T0288 85 :YNKL 1lcyA 321 :PEVT Number of specific fragments extracted= 6 number of extra gaps= 0 total=3998 Number of alignments=1007 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1lcyA)E325 T0288 1 :SMVPGKVTLQK 1lcyA 23 :KTAPAVVYIEI T0288 12 :DAQNLIGISIGGGAQYCP 1lcyA 35 :DRHPFLGREVPISNGSGF T0288 30 :CLYIVQVFDNTPAALDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKGK 1lcyA 274 :LRPGDVILAIGEQMVQNA T0288 66 :TKVEVAKMIQEVKGEVTIH 1lcyA 300 :TQSQLAVQIRRGRETLTLY T0288 85 :YNKL 1lcyA 321 :PEVT Number of specific fragments extracted= 6 number of extra gaps= 0 total=4004 Number of alignments=1008 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1lcyA)E325 T0288 1 :SMVP 1lcyA 6 :PPAS T0288 6 :KVTLQKDAQ 1lcyA 30 :YIEILDRHP T0288 16 :LIGISIGGGA 1lcyA 49 :GSGFVVAADG T0288 30 :CLYIVQVFDNTPAALDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQEV 1lcyA 291 :AEDVYEAVRTQ T0288 78 :KGEVTIH 1lcyA 312 :RETLTLY T0288 85 :YNKL 1lcyA 321 :PEVT Number of specific fragments extracted= 8 number of extra gaps= 0 total=4012 Number of alignments=1009 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0288)Q89 because last residue in template chain is (1lcyA)E325 T0288 1 :SMVP 1lcyA 6 :PPAS T0288 5 :GKVTLQKDAQN 1lcyA 29 :VYIEILDRHPF T0288 16 :LIGISIG 1lcyA 49 :GSGFVVA T0288 26 :QYC 1lcyA 69 :DRR T0288 30 :CLYIVQVFDNTPAALDG 1lcyA 257 :GVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQE 1lcyA 291 :AEDVYEAVRT T0288 78 :KGEVTIH 1lcyA 301 :QSQLAVQ T0288 85 :YNKL 1lcyA 321 :PEVT Number of specific fragments extracted= 9 number of extra gaps= 0 total=4021 Number of alignments=1010 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 26 :QYCPCLYIVQVFDNTPAALDG 1lcyA 253 :DVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKGK 1lcyA 274 :LRPGDVILAIGEQMVQNA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4023 Number of alignments=1011 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1lcyA 252 :PDVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKGK 1lcyA 274 :LRPGDVILAIGEQMVQNA T0288 68 :VEVAKMI 1lcyA 292 :EDVYEAV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4026 Number of alignments=1012 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 13 :AQN 1lcyA 249 :PSF T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1lcyA 252 :PDVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQEVKG 1lcyA 291 :AEDVYEAVRTQSQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=4030 Number of alignments=1013 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 12 :DAQN 1lcyA 248 :EPSF T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1lcyA 252 :PDVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQEV 1lcyA 291 :AEDVYEAVRTQ T0288 79 :GEVTIH 1lcyA 302 :SQLAVQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=4035 Number of alignments=1014 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1lcyA)E325 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1lcyA 30 :YIEILDRHPFLGREVPISNGSG T0288 27 :YCPCLYIVQVFDNTPAALDG 1lcyA 254 :VQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKGK 1lcyA 274 :LRPGDVILAIGEQMVQNA T0288 66 :TKVEVAKMIQEVKGEVTIHYNKLQY 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPEVT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4039 Number of alignments=1015 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0288)Y91 because last residue in template chain is (1lcyA)E325 T0288 5 :GKVTLQKDAQNLIG 1lcyA 28 :VVYIEILDRHPFLG T0288 19 :ISIGGGAQ 1lcyA 44 :VPISNGSG T0288 27 :YCPCLYIVQVFDNTPAALDG 1lcyA 254 :VQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKGK 1lcyA 274 :LRPGDVILAIGEQMVQNA T0288 66 :TKVEVAKMIQEVKGEVTIHYNKLQY 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPEVT Number of specific fragments extracted= 5 number of extra gaps= 0 total=4044 Number of alignments=1016 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 5 :GKVTLQKDAQN 1lcyA 30 :YIEILDRHPFL T0288 16 :LIGISIG 1lcyA 49 :GSGFVVA T0288 25 :AQ 1lcyA 56 :AD T0288 27 :YCPCLYIVQVFDNTPAALDG 1lcyA 254 :VQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQE 1lcyA 291 :AEDVYEAVRT T0288 78 :KGEVTIHYNKLQYYKV 1lcyA 301 :QSQLAVQIRRGRETLT Number of specific fragments extracted= 7 number of extra gaps= 0 total=4051 Number of alignments=1017 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 5 :GKVTLQKDAQN 1lcyA 29 :VYIEILDRHPF T0288 16 :LIGISIGGGAQ 1lcyA 48 :NGSGFVVAADG T0288 27 :YCPCLYIVQVFDNTPAALDG 1lcyA 254 :VQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQEV 1lcyA 291 :AEDVYEAVRTQ T0288 79 :GEVTIHYNKLQYYKV 1lcyA 302 :SQLAVQIRRGRETLT Number of specific fragments extracted= 6 number of extra gaps= 0 total=4057 Number of alignments=1018 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 26 :QYCPCLYIVQVFDNTPAALDG 1lcyA 253 :DVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKGK 1lcyA 274 :LRPGDVILAIGEQMVQNA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4059 Number of alignments=1019 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1lcyA 252 :PDVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKGK 1lcyA 274 :LRPGDVILAIGEQMVQNA T0288 68 :VEVAKMI 1lcyA 292 :EDVYEAV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4062 Number of alignments=1020 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1lcyA 252 :PDVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQE 1lcyA 291 :AEDVYEAVRT T0288 78 :KGEVTIHYNKLQYY 1lcyA 301 :QSQLAVQIRRGRET Number of specific fragments extracted= 4 number of extra gaps= 0 total=4066 Number of alignments=1021 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0288 24 :GAQYCPCLYIVQVFDNTPAALDG 1lcyA 251 :FPDVQHGVLIHKVILGSPAHRAG T0288 48 :VAAGDEITGVNGRSIKG 1lcyA 274 :LRPGDVILAIGEQMVQN T0288 67 :KVEVAKMIQEV 1lcyA 291 :AEDVYEAVRTQ T0288 79 :GEVTIHYNKLQY 1lcyA 302 :SQLAVQIRRGRE Number of specific fragments extracted= 4 number of extra gaps= 0 total=4070 Number of alignments=1022 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sotA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1sotA expands to /projects/compbio/data/pdb/1sot.pdb.gz 1sotA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0288 read from 1sotA/merged-a2m # 1sotA read from 1sotA/merged-a2m # adding 1sotA to template set # found chain 1sotA in template set Warning: unaligning (T0288)Y85 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0288 1 :SMVPGKVTLQKDAQN 1sotA 63 :NRGLNTNSHNQLEIR T0288 20 :SIGGGAQYCPC 1sotA 78 :TLGSGVIMDQR T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1sotA 298 :IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4074 Number of alignments=1023 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)Y85 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0288 1 :SMVPGKVTLQKDA 1sotA 57 :AVVNVYNRGLNTN T0288 14 :QNLIGISIGGGAQYCPC 1sotA 72 :NQLEIRTLGSGVIMDQR T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1sotA 298 :IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4078 Number of alignments=1024 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)Y85 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1sotA 298 :IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 2 number of extra gaps= 0 total=4080 Number of alignments=1025 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)G22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)G281 Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0288 18 :GISI 1sotA 260 :GIGG T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1sotA 298 :IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4083 Number of alignments=1026 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)Y85 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0288)L88 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCP 1sotA 112 :RVFEALLVGSDSLTDLAVLKINATGGLPT T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1sotA 298 :IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV T0288 89 :QYYKV 1sotA 342 :LTLQV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4087 Number of alignments=1027 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)A25 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)E230 Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)Y85 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0288)L88 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0288 1 :SMVPGKVTLQKDAQN 1sotA 112 :RVFEALLVGSDSLTD T0288 16 :LIGISIGGG 1sotA 212 :LMGINTLSF T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1sotA 298 :IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV T0288 89 :QYYKV 1sotA 342 :LTLQV Number of specific fragments extracted= 5 number of extra gaps= 0 total=4092 Number of alignments=1028 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)G22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)G281 Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)Y85 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0288 16 :LIGISI 1sotA 258 :YIGIGG T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1sotA 298 :IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4095 Number of alignments=1029 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)G22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)G281 Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0288 16 :LIGISI 1sotA 258 :YIGIGG T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1sotA 298 :IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4098 Number of alignments=1030 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=4099 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4099 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)E80 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0288 1 :SMVPGKVTLQKDAQN 1sotA 43 :TPASYNLAVRRAAPA T0288 21 :IGGGAQYCP 1sotA 58 :VVNVYNRGL T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGK 1sotA 298 :IQVNDLIISVDNKPAISA T0288 66 :TKVEVAKMIQEV 1sotA 318 :TMDQVAEIRPGS T0288 81 :VTIHYNKLQYY 1sotA 342 :LTLQVTIQEYP Number of specific fragments extracted= 6 number of extra gaps= 0 total=4105 Number of alignments=1031 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)Y85 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0288)Y91 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0288 1 :SMVPGKVTLQK 1sotA 53 :RAAPAVVNVYN T0288 17 :IGISIGGG 1sotA 64 :RGLNTNSH T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGK 1sotA 298 :IQVNDLIISVDNKPAISA T0288 66 :TKVEVAKM 1sotA 318 :TMDQVAEI T0288 78 :KGEVTIH 1sotA 328 :GSVIPVV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4111 Number of alignments=1032 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)Y85 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0288)Y91 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0288 1 :SMVP 1sotA 42 :MTPA T0288 7 :VTL 1sotA 61 :VYN T0288 11 :KDA 1sotA 64 :RGL T0288 26 :QYCP 1sotA 67 :NTNS T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKG 1sotA 298 :IQVNDLIISVDNKPAIS T0288 67 :KVEVAKMIQEV 1sotA 315 :ALETMDQVAEI T0288 78 :KGEVTIH 1sotA 328 :GSVIPVV Number of specific fragments extracted= 8 number of extra gaps= 0 total=4119 Number of alignments=1033 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)K78 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 Warning: unaligning (T0288)Y90 because last residue in template chain is (1sotA)A353 T0288 1 :SMVP 1sotA 42 :MTPA T0288 6 :KVTLQK 1sotA 58 :VVNVYN T0288 12 :DAQN 1sotA 69 :NSHN T0288 16 :LIGISIGGGAQ 1sotA 78 :TLGSGVIMDQR T0288 28 :CP 1sotA 89 :GY T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKG 1sotA 298 :IQVNDLIISVDNKPAIS T0288 67 :KVEVAKMIQEV 1sotA 315 :ALETMDQVAEI T0288 79 :GEVTIHYNKLQ 1sotA 342 :LTLQVTIQEYP Number of specific fragments extracted= 9 number of extra gaps= 0 total=4128 Number of alignments=1034 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGK 1sotA 298 :IQVNDLIISVDNKPAISA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4130 Number of alignments=1035 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)Y85 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGK 1sotA 298 :IQVNDLIISVDNKPAISA T0288 68 :VEVAKMIQEV 1sotA 316 :LETMDQVAEI T0288 78 :KGEVTIH 1sotA 328 :GSVIPVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4134 Number of alignments=1036 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)Y85 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0288)Y91 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKG 1sotA 298 :IQVNDLIISVDNKPAIS T0288 67 :KVEVAKMIQEV 1sotA 315 :ALETMDQVAEI T0288 78 :KGEVTIH 1sotA 328 :GSVIPVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4138 Number of alignments=1037 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKG 1sotA 298 :IQVNDLIISVDNKPAIS T0288 67 :KVEVAKMIQEV 1sotA 315 :ALETMDQVAEI T0288 78 :KGEVTIH 1sotA 328 :GSVIPVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4142 Number of alignments=1038 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)T82 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0288)Y85 because last residue in template chain is (1sotA)A353 T0288 1 :SMVPGKVTLQK 1sotA 53 :RAAPAVVNVYN T0288 17 :IGISIGGGAQYCP 1sotA 64 :RGLNTNSHNQLEI T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGK 1sotA 298 :IQVNDLIISVDNKPAISA T0288 66 :TKVEVAKMIQEV 1sotA 318 :TMDQVAEIRPGS T0288 78 :KGEV 1sotA 331 :IPVV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4148 Number of alignments=1039 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)Y85 because last residue in template chain is (1sotA)A353 T0288 1 :SMVPGKVTLQKD 1sotA 53 :RAAPAVVNVYNR T0288 18 :GISIGGGA 1sotA 65 :GLNTNSHN T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGK 1sotA 298 :IQVNDLIISVDNKPAISA T0288 66 :TKVEVAKMIQEV 1sotA 318 :TMDQVAEIRPGS T0288 78 :KGEV 1sotA 331 :IPVV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4154 Number of alignments=1040 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1sotA)M42 Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)Y85 because last residue in template chain is (1sotA)A353 T0288 3 :VPG 1sotA 43 :TPA T0288 7 :VTLQK 1sotA 61 :VYNRG T0288 14 :QN 1sotA 68 :TN T0288 16 :LIGISIG 1sotA 78 :TLGSGVI T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKG 1sotA 298 :IQVNDLIISVDNKPAIS T0288 67 :KVEVAKMIQEV 1sotA 315 :ALETMDQVAEI T0288 78 :KGEVTIH 1sotA 328 :GSVIPVV Number of specific fragments extracted= 8 number of extra gaps= 0 total=4162 Number of alignments=1041 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)K87 because last residue in template chain is (1sotA)A353 T0288 1 :SMVP 1sotA 42 :MTPA T0288 6 :KVTLQK 1sotA 58 :VVNVYN T0288 12 :DAQN 1sotA 69 :NSHN T0288 16 :LIGISIGGGAQ 1sotA 78 :TLGSGVIMDQR T0288 28 :CP 1sotA 89 :GY T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIK 1sotA 298 :IQVNDLIISVDNKPAI T0288 66 :TKVEVAKMIQEV 1sotA 314 :SALETMDQVAEI T0288 78 :KGEVTIH 1sotA 328 :GSVIPVV T0288 85 :YN 1sotA 351 :YP Number of specific fragments extracted= 10 number of extra gaps= 0 total=4172 Number of alignments=1042 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGK 1sotA 298 :IQVNDLIISVDNKPAISA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4174 Number of alignments=1043 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGK 1sotA 298 :IQVNDLIISVDNKPAISA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4176 Number of alignments=1044 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)N86 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKG 1sotA 298 :IQVNDLIISVDNKPAIS T0288 67 :KVEVAKMIQEV 1sotA 315 :ALETMDQVAEI T0288 78 :KGEVTIH 1sotA 328 :GSVIPVV T0288 87 :K 1sotA 342 :L Number of specific fragments extracted= 5 number of extra gaps= 0 total=4181 Number of alignments=1045 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)N86 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0288 9 :LQKDAQNLIGISIG 1sotA 205 :LVNSLGELMGINTL T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIK 1sotA 298 :IQVNDLIISVDNKPAI T0288 66 :TKVEVAKMIQEV 1sotA 314 :SALETMDQVAEI T0288 78 :KGEVTIH 1sotA 328 :GSVIPVV T0288 87 :KLQYYK 1sotA 342 :LTLQVT Number of specific fragments extracted= 6 number of extra gaps= 0 total=4187 Number of alignments=1046 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)K87 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0288)V93 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1sotA 42 :MTPASYNLAVRRAAPAVVNVYNRGLN T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGK 1sotA 298 :IQVNDLIISVDNKPAISA T0288 68 :VEVAKMIQEVKGEVTIHYN 1sotA 316 :LETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4191 Number of alignments=1047 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)K87 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0288)V93 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1sotA 42 :MTPASYNLAVRRAAPAVVNVYNRGLN T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGK 1sotA 298 :IQVNDLIISVDNKPAISA T0288 68 :VEVAKMIQEVKGEVTIHYN 1sotA 316 :LETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4195 Number of alignments=1048 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)K87 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0288)V93 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0288 1 :SMVPG 1sotA 42 :MTPAS T0288 6 :KVTLQKDAQN 1sotA 61 :VYNRGLNTNS T0288 16 :LIGISIGGGAQ 1sotA 78 :TLGSGVIMDQR T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGK 1sotA 298 :IQVNDLIISVDNKPAISA T0288 68 :VEVAKMIQEVKGEVTIHYN 1sotA 316 :LETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4201 Number of alignments=1049 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)K87 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0288)V93 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0288 1 :S 1sotA 42 :M T0288 17 :IGISIGGGAQ 1sotA 79 :LGSGVIMDQR T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKG 1sotA 298 :IQVNDLIISVDNKPAIS T0288 67 :KVEVAKMIQEVKGEVTIHYN 1sotA 315 :ALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 5 number of extra gaps= 0 total=4206 Number of alignments=1050 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRS 1sotA 298 :IQVNDLIISVDNKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=4208 Number of alignments=1051 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGK 1sotA 298 :IQVNDLIISVDNKPAISA T0288 68 :VEVAKMIQEV 1sotA 316 :LETMDQVAEI Number of specific fragments extracted= 3 number of extra gaps= 0 total=4211 Number of alignments=1052 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)K87 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKGK 1sotA 298 :IQVNDLIISVDNKPAISA T0288 68 :VEVAKMIQEVKGEVTIHYN 1sotA 316 :LETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4214 Number of alignments=1053 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0288)C30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0288)K87 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0288 31 :LYIVQVFDNTPAALDG 1sotA 282 :IVVNEVSPDGPAANAG T0288 48 :VAAGDEITGVNGRSIKG 1sotA 298 :IQVNDLIISVDNKPAIS T0288 67 :KVEVAKMIQEVKGEVTIHYN 1sotA 315 :ALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4217 Number of alignments=1054 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f5yA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 2f5yA/merged-a2m # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f5yA)V95 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGGGA 2f5yA 28 :FGFTICCDS T0288 30 :CLYIVQVFDNTPAALDG 2f5yA 37 :PVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 5 number of extra gaps= 1 total=4222 Number of alignments=1055 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f5yA)V95 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGGGA 2f5yA 28 :FGFTICCDS T0288 30 :CLYIVQVFDNTPAALDG 2f5yA 37 :PVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 5 number of extra gaps= 1 total=4227 Number of alignments=1056 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 7 :VTLQKDAQN 2f5yA 19 :ITIPRGKDG T0288 17 :IGISIGGGA 2f5yA 28 :FGFTICCDS T0288 30 :CLYIVQVFDNTPAALDG 2f5yA 37 :PVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTI 2f5yA 71 :WKCVELAHEIRSCPSEIIL Number of specific fragments extracted= 5 number of extra gaps= 1 total=4232 Number of alignments=1057 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 6 :KVTLQKDAQN 2f5yA 18 :QITIPRGKDG T0288 17 :IGISIGGGA 2f5yA 28 :FGFTICCDS T0288 30 :CLYIVQVFDNTPAALDG 2f5yA 37 :PVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIH 2f5yA 71 :WKCVELAHEIRSCPSEIILL Number of specific fragments extracted= 5 number of extra gaps= 1 total=4237 Number of alignments=1058 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)S1 because of BadResidue code BAD_PEPTIDE in next template residue (2f5yA)R15 Warning: unaligning (T0288)M2 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f5yA)V95 T0288 3 :VPGKVTLQKDAQNLIGISIGGG 2f5yA 16 :YRQITIPRGKDGFGFTICCDSP T0288 31 :LYIVQVFDNTPAALDG 2f5yA 38 :VRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4241 Number of alignments=1059 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)S1 because of BadResidue code BAD_PEPTIDE in next template residue (2f5yA)R15 Warning: unaligning (T0288)M2 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f5yA)V95 T0288 3 :VPGKVTLQKDAQNLIGISIGGG 2f5yA 16 :YRQITIPRGKDGFGFTICCDSP T0288 31 :LYIVQVFDNTPAALDG 2f5yA 38 :VRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4245 Number of alignments=1060 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 21 :IGGGAQYCPCLYIVQVFDNTPAALDG 2f5yA 28 :FGFTICCDSPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTI 2f5yA 71 :WKCVELAHEIRSCPSEIIL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4248 Number of alignments=1061 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 21 :IGGGAQYCPCLYIVQVFDNTPAALDG 2f5yA 28 :FGFTICCDSPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTI 2f5yA 71 :WKCVELAHEIRSCPSEIIL Number of specific fragments extracted= 3 number of extra gaps= 1 total=4251 Number of alignments=1062 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 2f5yA 34 :CDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTI 2f5yA 71 :WKCVELAHEIRSCPSEIIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=4253 Number of alignments=1063 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 2f5yA 33 :CCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTI 2f5yA 71 :WKCVELAHEIRSCPSEIIL Number of specific fragments extracted= 2 number of extra gaps= 1 total=4255 Number of alignments=1064 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f5yA)V95 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGGGA 2f5yA 28 :FGFTICCDS T0288 30 :CLYIVQVFDNTPAALDG 2f5yA 37 :PVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 5 number of extra gaps= 1 total=4260 Number of alignments=1065 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f5yA)V95 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGGG 2f5yA 28 :FGFTICCD T0288 29 :PCLYIVQVFDNTPAALDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 5 number of extra gaps= 1 total=4265 Number of alignments=1066 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f5yA)V95 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGGGA 2f5yA 28 :FGFTICCDS T0288 30 :CLYIVQVFDNTPAALDG 2f5yA 37 :PVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 5 number of extra gaps= 1 total=4270 Number of alignments=1067 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f5yA)V95 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGG 2f5yA 28 :FGFTICC T0288 28 :CPCLYIVQVFDNTPAALDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 5 number of extra gaps= 1 total=4275 Number of alignments=1068 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f5yA)V95 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGGGA 2f5yA 28 :FGFTICCDS T0288 30 :CLYIVQVFDNTPAALDG 2f5yA 37 :PVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 5 number of extra gaps= 1 total=4280 Number of alignments=1069 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGGG 2f5yA 28 :FGFTICCD T0288 29 :PCLYIVQVFDNTPAALDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 5 number of extra gaps= 2 total=4285 Number of alignments=1070 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f5yA)V95 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGGGA 2f5yA 28 :FGFTICCDS T0288 30 :CLYIVQVFDNTPAALDG 2f5yA 37 :PVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 5 number of extra gaps= 1 total=4290 Number of alignments=1071 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f5yA)V95 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGG 2f5yA 28 :FGFTICC T0288 28 :CPCLYIVQVFDNTPAALDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 5 number of extra gaps= 1 total=4295 Number of alignments=1072 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)Y85 because last residue in template chain is (2f5yA)V95 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGGGA 2f5yA 28 :FGFTICCDS T0288 30 :CLYIVQVFDNTPAALDG 2f5yA 37 :PVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIH 2f5yA 71 :WKCVELAHEIRSCPSEIILL Number of specific fragments extracted= 5 number of extra gaps= 1 total=4300 Number of alignments=1073 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGG 2f5yA 28 :FGFTICC T0288 28 :CPCLYIVQVFDNTPAALDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIH 2f5yA 71 :WKCVELAHEIRSCPSEIILL Number of specific fragments extracted= 5 number of extra gaps= 1 total=4305 Number of alignments=1074 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGGG 2f5yA 28 :FGFTICCD T0288 29 :PCLYIVQVFDNTPAALDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIH 2f5yA 71 :WKCVELAHEIRSCPSEIILL Number of specific fragments extracted= 5 number of extra gaps= 1 total=4310 Number of alignments=1075 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGG 2f5yA 28 :FGFTICC T0288 28 :CPCLYIVQVFDNTPAALDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIH 2f5yA 71 :WKCVELAHEIRSCPSEIILL Number of specific fragments extracted= 5 number of extra gaps= 1 total=4315 Number of alignments=1076 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGGGA 2f5yA 28 :FGFTICCDS T0288 30 :CLYIVQVFDNTPAALDG 2f5yA 37 :PVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIH 2f5yA 71 :WKCVELAHEIRSCPSEIILL Number of specific fragments extracted= 5 number of extra gaps= 1 total=4320 Number of alignments=1077 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGG 2f5yA 28 :FGFTICC T0288 28 :CPCLYIVQVFDNTPAALDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIH 2f5yA 71 :WKCVELAHEIRSCPSEIILL Number of specific fragments extracted= 5 number of extra gaps= 2 total=4325 Number of alignments=1078 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)L88 because last residue in template chain is (2f5yA)V95 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGGG 2f5yA 28 :FGFTICCD T0288 29 :PCLYIVQVFDNTPAALDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIH 2f5yA 71 :WKCVELAHEIRSCPSEIILL T0288 85 :YNK 2f5yA 92 :WRM Number of specific fragments extracted= 6 number of extra gaps= 1 total=4331 Number of alignments=1079 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)M2 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)V3 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 4 :PGKVTLQKDAQN 2f5yA 16 :YRQITIPRGKDG T0288 17 :IGISIGG 2f5yA 28 :FGFTICC T0288 28 :CPCLYIVQVFDNTPAALDG 2f5yA 35 :DSPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIH 2f5yA 71 :WKCVELAHEIRSCPSEIILL Number of specific fragments extracted= 5 number of extra gaps= 1 total=4336 Number of alignments=1080 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)P4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 5 :GKVTLQKDAQNLIGISIGGG 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0288 29 :PCLYIVQVFDNTPAALDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4340 Number of alignments=1081 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)P4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 5 :GKVTLQKDAQNLIGISIGGG 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0288 29 :PCLYIVQVFDNTPAALDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4344 Number of alignments=1082 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)P4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 5 :GKVTLQKDAQNLIGISIGGG 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0288 29 :PCLYIVQVFDNTPAALDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4348 Number of alignments=1083 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)P4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 5 :GKVTLQKDAQNLIGISIGGG 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0288 29 :PCLYIVQVFDNTPAALDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4352 Number of alignments=1084 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)P4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 5 :GKVTLQKDAQNLIGISIGGG 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0288 29 :PCLYIVQVFDNTPAALDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTI 2f5yA 71 :WKCVELAHEIRSCPSEIIL Number of specific fragments extracted= 4 number of extra gaps= 2 total=4356 Number of alignments=1085 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 5 :GKVTLQKDAQNLIGISIGGG 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0288 29 :PCLYIVQVFDNTPAALDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHY 2f5yA 71 :WKCVELAHEIRSCPSEIILLV Number of specific fragments extracted= 4 number of extra gaps= 1 total=4360 Number of alignments=1086 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)P4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0288)Q89 because last residue in template chain is (2f5yA)V95 T0288 5 :GKVTLQKDAQNLIGISIGGG 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0288 29 :PCLYIVQVFDNTPAALDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4364 Number of alignments=1087 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0288)P4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0288)K63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0288)G64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0288 5 :GKVTLQKDAQNLIGISIGGG 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0288 29 :PCLYIVQVFDNTPAALDG 2f5yA 36 :SPVRVQAVDSGGPAERAG T0288 48 :VAAGDEITGVNGRSI 2f5yA 54 :LQQLDTVLQLNERPV T0288 65 :KTKVEVAKMIQEVKGEVTIHYNKL 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4368 Number of alignments=1088 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kwaA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kwaA expands to /projects/compbio/data/pdb/1kwa.pdb.gz 1kwaA:# T0288 read from 1kwaA/merged-a2m # 1kwaA read from 1kwaA/merged-a2m # adding 1kwaA to template set # found chain 1kwaA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaA)R487 T0288 4 :PGKVTLQKDAQNLIGISIGG 1kwaA 488 :SRLVQFQKNTDEPMGITLKM T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1kwaA 508 :NELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS T0288 90 :YYKV 1kwaA 571 :YREF Number of specific fragments extracted= 3 number of extra gaps= 0 total=4371 Number of alignments=1089 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 5 :GKVTLQKDAQNLIGISIGG 1kwaA 489 :RLVQFQKNTDEPMGITLKM T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1kwaA 508 :NELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKI Number of specific fragments extracted= 2 number of extra gaps= 0 total=4373 Number of alignments=1090 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0288)K92 because last residue in template chain is (1kwaA)F574 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQY 1kwaA 488 :SRLVQFQKNTDEPMGITLKMNELN T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4375 Number of alignments=1091 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0288)K92 because last residue in template chain is (1kwaA)F574 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQY 1kwaA 488 :SRLVQFQKNTDEPMGITLKMNELN T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4377 Number of alignments=1092 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 7 :VTLQKDAQNLIGISIGGGAQY 1kwaA 491 :VQFQKNTDEPMGITLKMNELN T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF Number of specific fragments extracted= 2 number of extra gaps= 0 total=4379 Number of alignments=1093 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQY 1kwaA 490 :LVQFQKNTDEPMGITLKMNELN T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK Number of specific fragments extracted= 2 number of extra gaps= 0 total=4381 Number of alignments=1094 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 1 :SMV 1kwaA 487 :RSR T0288 6 :KVTLQKDAQNLIGISIGGG 1kwaA 490 :LVQFQKNTDEPMGITLKMN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP T0288 89 :QYYKV 1kwaA 570 :SYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4385 Number of alignments=1095 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 1 :SMV 1kwaA 487 :RSR T0288 6 :KVTLQKDAQNLIGISIGGG 1kwaA 490 :LVQFQKNTDEPMGITLKMN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP T0288 89 :QYYKV 1kwaA 570 :SYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4389 Number of alignments=1096 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 6 :KVTLQKDAQNLIGISIGGG 1kwaA 490 :LVQFQKNTDEPMGITLKMN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF Number of specific fragments extracted= 2 number of extra gaps= 0 total=4391 Number of alignments=1097 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 6 :KVTLQKDAQNLIGISIGGG 1kwaA 490 :LVQFQKNTDEPMGITLKMN T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1kwaA 509 :ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF Number of specific fragments extracted= 2 number of extra gaps= 0 total=4393 Number of alignments=1098 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 46 :GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1kwaA 528 :GTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4394 Number of alignments=1099 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 7 :VTLQKDAQNLIGISIGGGA 1kwaA 491 :VQFQKNTDEPMGITLKMNE T0288 27 :YCPC 1kwaA 510 :LNHC T0288 32 :YIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaA 514 :IVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK Number of specific fragments extracted= 3 number of extra gaps= 0 total=4397 Number of alignments=1100 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaA)R487 T0288 4 :PGKVTLQKDAQNLIGISI 1kwaA 488 :SRLVQFQKNTDEPMGITL T0288 24 :GAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaA 506 :KMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4399 Number of alignments=1101 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaA 488 :SRLVQFQKNTDEPMGITLK T0288 25 :AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaA 507 :MNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4401 Number of alignments=1102 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaA)R487 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaA 488 :SRLVQFQKNTDEPMGITLK T0288 25 :AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaA 507 :MNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4403 Number of alignments=1103 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 1 :SM 1kwaA 487 :RS T0288 5 :GKVTLQKDAQNLIGISIG 1kwaA 489 :RLVQFQKNTDEPMGITLK T0288 23 :GGAQ 1kwaA 508 :NELN T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 4 number of extra gaps= 0 total=4407 Number of alignments=1104 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 5 :GKVTLQKDAQNLIGISI 1kwaA 489 :RLVQFQKNTDEPMGITL T0288 24 :GAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 1kwaA 506 :KMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4409 Number of alignments=1105 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 5 :GKVTLQKDAQNLIGISIG 1kwaA 489 :RLVQFQKNTDEPMGITLK T0288 25 :AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1kwaA 507 :MNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 2 number of extra gaps= 0 total=4411 Number of alignments=1106 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaA)R487 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaA 488 :SRLVQFQKNTDEPMGITLK T0288 25 :AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaA 507 :MNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4413 Number of alignments=1107 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaA)R487 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaA 488 :SRLVQFQKNTDEPMGITLK T0288 23 :GGAQ 1kwaA 508 :NELN T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4416 Number of alignments=1108 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0288)Y90 because last residue in template chain is (1kwaA)F574 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaA 488 :SRLVQFQKNTDEPMGITLK T0288 25 :AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaA 507 :MNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK T0288 85 :YNKLQ 1kwaA 569 :PSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4419 Number of alignments=1109 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)Y90 because last residue in template chain is (1kwaA)F574 T0288 1 :SM 1kwaA 487 :RS T0288 5 :GKVTLQKDAQNLIGISIG 1kwaA 489 :RLVQFQKNTDEPMGITLK T0288 25 :AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaA 507 :MNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK T0288 85 :YNKLQ 1kwaA 569 :PSYRE Number of specific fragments extracted= 4 number of extra gaps= 0 total=4423 Number of alignments=1110 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)Y90 because last residue in template chain is (1kwaA)F574 T0288 1 :SM 1kwaA 487 :RS T0288 5 :GKVTLQKDAQNLIGISIG 1kwaA 489 :RLVQFQKNTDEPMGITLK T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaA 508 :NELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK T0288 85 :YNKLQ 1kwaA 569 :PSYRE Number of specific fragments extracted= 4 number of extra gaps= 0 total=4427 Number of alignments=1111 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 1 :SM 1kwaA 487 :RS T0288 5 :GKVTLQKDAQNLIGISIG 1kwaA 489 :RLVQFQKNTDEPMGITLK T0288 23 :GGAQ 1kwaA 508 :NELN T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK T0288 90 :YYKV 1kwaA 571 :YREF Number of specific fragments extracted= 5 number of extra gaps= 0 total=4432 Number of alignments=1112 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)Y90 because last residue in template chain is (1kwaA)F574 T0288 5 :GKVTLQKDAQNLIGISIG 1kwaA 489 :RLVQFQKNTDEPMGITLK T0288 25 :AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaA 507 :MNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK T0288 85 :YNKLQ 1kwaA 569 :PSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4435 Number of alignments=1113 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 5 :GKVTLQKDAQNLIGISIG 1kwaA 489 :RLVQFQKNTDEPMGITLK T0288 25 :AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaA 507 :MNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK T0288 85 :YN 1kwaA 569 :PS Number of specific fragments extracted= 3 number of extra gaps= 0 total=4438 Number of alignments=1114 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaA)R487 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaA 488 :SRLVQFQKNTDEPMGITLK T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaA 508 :NELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK T0288 85 :YNKLQ 1kwaA 569 :PSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4441 Number of alignments=1115 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaA)R487 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaA 488 :SRLVQFQKNTDEPMGITLK T0288 23 :GGAQ 1kwaA 508 :NELN T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaA 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK Number of specific fragments extracted= 3 number of extra gaps= 0 total=4444 Number of alignments=1116 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0288)K92 because last residue in template chain is (1kwaA)F574 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1kwaA 488 :SRLVQFQKNTDEPMGITLKMNEL T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaA 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4446 Number of alignments=1117 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0288)K92 because last residue in template chain is (1kwaA)F574 T0288 4 :PGKVTLQKDAQNLIGISIGGGA 1kwaA 488 :SRLVQFQKNTDEPMGITLKMNE T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaA 510 :LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4448 Number of alignments=1118 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaA)R487 Warning: unaligning (T0288)K92 because last residue in template chain is (1kwaA)F574 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1kwaA 488 :SRLVQFQKNTDEPMGITLKMNEL T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaA 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4450 Number of alignments=1119 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)K92 because last residue in template chain is (1kwaA)F574 T0288 1 :SM 1kwaA 487 :RS T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1kwaA 489 :RLVQFQKNTDEPMGITLKMNEL T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaA 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4453 Number of alignments=1120 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1kwaA 490 :LVQFQKNTDEPMGITLKMNEL T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1kwaA 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF Number of specific fragments extracted= 2 number of extra gaps= 0 total=4455 Number of alignments=1121 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 6 :KVTLQKDAQNLIGISIGGGA 1kwaA 490 :LVQFQKNTDEPMGITLKMNE T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1kwaA 510 :LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKI Number of specific fragments extracted= 2 number of extra gaps= 0 total=4457 Number of alignments=1122 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1kwaA 488 :SRLVQFQKNTDEPMGITLKMNEL T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaA 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4459 Number of alignments=1123 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0288)K92 because last residue in template chain is (1kwaA)F574 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1kwaA 489 :RLVQFQKNTDEPMGITLKMNEL T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaA 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4461 Number of alignments=1124 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kwaB/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kwaB expands to /projects/compbio/data/pdb/1kwa.pdb.gz 1kwaB:# T0288 read from 1kwaB/merged-a2m # 1kwaB read from 1kwaB/merged-a2m # adding 1kwaB to template set # found chain 1kwaB in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS T0288 90 :YYK 1kwaB 571 :YRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=4464 Number of alignments=1125 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 5 :GKVTLQKDAQNLIGISIG 1kwaB 489 :RLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=4466 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 1 :SMV 1kwaB 487 :RSR T0288 6 :KVTLQKDAQNLIGISIG 1kwaB 490 :LVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP T0288 89 :QYYKV 1kwaB 570 :SYREF Number of specific fragments extracted= 4 number of extra gaps= 1 total=4470 Number of alignments=1126 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 1 :SMV 1kwaB 487 :RSR T0288 6 :KVTLQKDAQNLIGISIG 1kwaB 490 :LVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP T0288 89 :QYYKV 1kwaB 570 :SYREF Number of specific fragments extracted= 4 number of extra gaps= 1 total=4474 Number of alignments=1127 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 6 :KVTLQKDAQNLIGISIG 1kwaB 490 :LVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF Number of specific fragments extracted= 2 number of extra gaps= 1 total=4476 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 6 :KVTLQKDAQNLIGISIG 1kwaB 490 :LVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF Number of specific fragments extracted= 2 number of extra gaps= 1 total=4478 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set T0288 46 :GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1kwaB 528 :GTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4479 Number of alignments=1128 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 7 :VTLQKDAQNLIGISIG 1kwaB 491 :VQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK Number of specific fragments extracted= 2 number of extra gaps= 1 total=4481 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 4 :PGKVTLQKDAQNLIGISI 1kwaB 488 :SRLVQFQKNTDEPMGITL T0288 26 :Q 1kwaB 506 :K T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=4484 Number of alignments=1129 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=4486 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=4488 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 1 :SM 1kwaB 487 :RS T0288 5 :GKVTLQKDAQNLIGISIG 1kwaB 489 :RLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=4491 Number of alignments=1130 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 5 :GKVTLQKDAQNLIGISI 1kwaB 489 :RLVQFQKNTDEPMGITL T0288 26 :Q 1kwaB 506 :K T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY Number of specific fragments extracted= 3 number of extra gaps= 1 total=4494 Number of alignments=1131 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 5 :GKVTLQKDAQNLIGISIG 1kwaB 489 :RLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 2 number of extra gaps= 1 total=4496 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=4498 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 2 number of extra gaps= 1 total=4500 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0288)Y91 because last residue in template chain is (1kwaB)F574 T0288 4 :PGKVTLQKDAQNLIGISI 1kwaB 488 :SRLVQFQKNTDEPMGITL T0288 26 :Q 1kwaB 506 :K T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK T0288 85 :YNKLQY 1kwaB 568 :VPSYRE Number of specific fragments extracted= 4 number of extra gaps= 1 total=4504 Number of alignments=1132 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0288)Y91 because last residue in template chain is (1kwaB)F574 T0288 1 :SM 1kwaB 487 :RS T0288 5 :GKVTLQKDAQNLIGISIG 1kwaB 489 :RLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK T0288 85 :YNKLQY 1kwaB 568 :VPSYRE Number of specific fragments extracted= 4 number of extra gaps= 1 total=4508 Number of alignments=1133 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0288)Y91 because last residue in template chain is (1kwaB)F574 T0288 1 :SM 1kwaB 487 :RS T0288 5 :GKVTLQKDAQNLIGISIG 1kwaB 489 :RLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK T0288 86 :NKLQY 1kwaB 569 :PSYRE Number of specific fragments extracted= 4 number of extra gaps= 1 total=4512 Number of alignments=1134 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0288)Y90 because last residue in template chain is (1kwaB)F574 T0288 1 :SM 1kwaB 487 :RS T0288 5 :GKVTLQKDAQNLIGISIG 1kwaB 489 :RLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK T0288 85 :YNKLQ 1kwaB 569 :PSYRE Number of specific fragments extracted= 4 number of extra gaps= 1 total=4516 Number of alignments=1135 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0288)Y90 because last residue in template chain is (1kwaB)F574 T0288 5 :GKVTLQKDAQNLIGISI 1kwaB 489 :RLVQFQKNTDEPMGITL T0288 26 :Q 1kwaB 506 :K T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK T0288 85 :YNKLQ 1kwaB 569 :PSYRE Number of specific fragments extracted= 4 number of extra gaps= 1 total=4520 Number of alignments=1136 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 5 :GKVTLQKDAQNLIGISIG 1kwaB 489 :RLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK T0288 85 :YNK 1kwaB 569 :PSY Number of specific fragments extracted= 3 number of extra gaps= 1 total=4523 Number of alignments=1137 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0288)Y90 because last residue in template chain is (1kwaB)F574 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK T0288 85 :YNKLQ 1kwaB 569 :PSYRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=4526 Number of alignments=1138 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0288)Y90 because last residue in template chain is (1kwaB)F574 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK T0288 85 :YNKLQ 1kwaB 569 :PSYRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=4529 Number of alignments=1139 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0288 25 :AQ 1kwaB 511 :NH T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaB 513 :CIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=4532 Number of alignments=1140 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0288)Y91 because last residue in template chain is (1kwaB)F574 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS T0288 89 :QY 1kwaB 572 :RE Number of specific fragments extracted= 3 number of extra gaps= 1 total=4535 Number of alignments=1141 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0288)K92 because last residue in template chain is (1kwaB)F574 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0288 25 :A 1kwaB 511 :N T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaB 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=4538 Number of alignments=1142 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0288)K92 because last residue in template chain is (1kwaB)F574 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=4540 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 6 :KVTLQKDAQNLIGISIG 1kwaB 490 :LVQFQKNTDEPMGITLK T0288 25 :AQ 1kwaB 511 :NH T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1kwaB 513 :CIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF Number of specific fragments extracted= 3 number of extra gaps= 1 total=4543 Number of alignments=1143 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 6 :KVTLQKDAQNLIGISIG 1kwaB 490 :LVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKI Number of specific fragments extracted= 2 number of extra gaps= 1 total=4545 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0288)K92 because last residue in template chain is (1kwaB)F574 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0288 25 :A 1kwaB 511 :N T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaB 512 :HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 3 number of extra gaps= 1 total=4548 Number of alignments=1144 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0288)G23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0288)G24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0288 4 :PGKVTLQKDAQNLIGISIG 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1kwaB 511 :NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 2 number of extra gaps= 1 total=4550 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pdr/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1pdr expands to /projects/compbio/data/pdb/1pdr.pdb.gz 1pdr:Warning: there is no chain 1pdr will retry with 1pdrA # T0288 read from 1pdr/merged-a2m # 1pdr read from 1pdr/merged-a2m # adding 1pdr to template set # found chain 1pdr in template set T0288 1 :SMVPGKVTLQK 1pdr 461 :TREPRKVVLHR T0288 13 :AQNLIGISIGGGAQ 1pdr 472 :GSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE T0288 91 :YKV 1pdr 553 :QHA Number of specific fragments extracted= 4 number of extra gaps= 0 total=4554 Number of alignments=1145 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 4 :PGKVTLQK 1pdr 464 :PRKVVLHR T0288 13 :AQNLIGISIGGGAQ 1pdr 472 :GSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4557 Number of alignments=1146 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 1 :SMVPGKVTLQKDA 1pdr 461 :TREPRKVVLHRGS T0288 15 :NLIGISIGGGAQ 1pdr 474 :TGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTI T0288 84 :HYNKLQYYKV 1pdr 546 :RPEEYSRQHA Number of specific fragments extracted= 4 number of extra gaps= 0 total=4561 Number of alignments=1147 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 1 :SMVPGKVTLQKDA 1pdr 461 :TREPRKVVLHRGS T0288 15 :NLIGISIGGGAQ 1pdr 474 :TGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIV T0288 85 :YNKLQYYKV 1pdr 547 :PEEYSRQHA Number of specific fragments extracted= 4 number of extra gaps= 0 total=4565 Number of alignments=1148 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 7 :VTLQKDA 1pdr 467 :VVLHRGS T0288 15 :NLIGISIGGGAQ 1pdr 474 :TGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=4568 Number of alignments=1149 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 5 :GKVTLQKDA 1pdr 465 :RKVVLHRGS T0288 15 :NLIGISIGGGAQ 1pdr 474 :TGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=4571 Number of alignments=1150 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 4 :PGKVTLQKDAQNL 1pdr 464 :PRKVVLHRGSTGL T0288 18 :GISIGGGAQ 1pdr 477 :GFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=4574 Number of alignments=1151 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 4 :PGKVTLQKDAQN 1pdr 464 :PRKVVLHRGSTG T0288 17 :IGISIGGGAQ 1pdr 476 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTI Number of specific fragments extracted= 3 number of extra gaps= 0 total=4577 Number of alignments=1152 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 1 :SMVPGKVTLQKDAQN 1pdr 461 :TREPRKVVLHRGSTG T0288 17 :IGISIGGGAQYC 1pdr 476 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1pdr 488 :GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEE T0288 92 :KV 1pdr 554 :HA Number of specific fragments extracted= 4 number of extra gaps= 0 total=4581 Number of alignments=1153 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 1 :SMVPGKVTLQKDAQN 1pdr 461 :TREPRKVVLHRGSTG T0288 17 :IGISIGGGAQYC 1pdr 476 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1pdr 488 :GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEE T0288 92 :KV 1pdr 554 :HA Number of specific fragments extracted= 4 number of extra gaps= 0 total=4585 Number of alignments=1154 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1pdr)I460 T0288 3 :VP 1pdr 461 :TR T0288 5 :GKVTLQKDAQN 1pdr 465 :RKVVLHRGSTG T0288 17 :IGISIGGGAQYC 1pdr 476 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1pdr 488 :GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEE T0288 92 :KV 1pdr 554 :HA Number of specific fragments extracted= 5 number of extra gaps= 0 total=4590 Number of alignments=1155 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1pdr)I460 T0288 3 :VP 1pdr 461 :TR T0288 5 :GKVTLQKDAQN 1pdr 465 :RKVVLHRGSTG T0288 17 :IGISIGGGAQYC 1pdr 476 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1pdr 488 :GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEE Number of specific fragments extracted= 4 number of extra gaps= 0 total=4594 Number of alignments=1156 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 3 :VPGKVTLQKDAQN 1pdr 463 :EPRKVVLHRGSTG T0288 17 :IGISIGGGAQYC 1pdr 476 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1pdr 488 :GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4597 Number of alignments=1157 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 3 :VPGKVTLQKDAQN 1pdr 463 :EPRKVVLHRGSTG T0288 17 :IGISIGGGAQYC 1pdr 476 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1pdr 488 :GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4600 Number of alignments=1158 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 1 :SMVPGKVTLQKDAQN 1pdr 461 :TREPRKVVLHRGSTG T0288 17 :IGISIGGGAQYC 1pdr 476 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1pdr 488 :GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4603 Number of alignments=1159 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 2 :MVPGKVTLQKDAQN 1pdr 462 :REPRKVVLHRGSTG T0288 17 :IGISIGGGAQYC 1pdr 476 :LGFNIVGGEDGE T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1pdr 488 :GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4606 Number of alignments=1160 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 1 :SMVPGKVTLQKDAQN 1pdr 461 :TREPRKVVLHRGSTG T0288 17 :IGISIGGGAQ 1pdr 476 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIV T0288 85 :YNKLQYYKV 1pdr 547 :PEEYSRQHA Number of specific fragments extracted= 4 number of extra gaps= 0 total=4610 Number of alignments=1161 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 1 :SMVPGKVTLQKDAQN 1pdr 461 :TREPRKVVLHRGSTG T0288 17 :IGISIGGGAQ 1pdr 476 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIV T0288 85 :YNKLQYYKV 1pdr 547 :PEEYSRQHA Number of specific fragments extracted= 4 number of extra gaps= 0 total=4614 Number of alignments=1162 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1pdr)I460 T0288 3 :VP 1pdr 461 :TR T0288 5 :GKVTLQKDAQN 1pdr 465 :RKVVLHRGSTG T0288 17 :IGISIGGGAQ 1pdr 476 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIV T0288 85 :YNKLQYYKV 1pdr 547 :PEEYSRQHA Number of specific fragments extracted= 5 number of extra gaps= 0 total=4619 Number of alignments=1163 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1pdr)I460 T0288 3 :VP 1pdr 461 :TR T0288 5 :GKVTLQKDAQN 1pdr 465 :RKVVLHRGSTG T0288 17 :IGISIGGGAQ 1pdr 476 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIV T0288 85 :YNKLQYYK 1pdr 545 :YRPEEYSR Number of specific fragments extracted= 5 number of extra gaps= 0 total=4624 Number of alignments=1164 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 4 :PGKVTLQKDAQN 1pdr 464 :PRKVVLHRGSTG T0288 17 :IGISIGGGAQ 1pdr 476 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4627 Number of alignments=1165 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 3 :VPGKVTLQKDAQN 1pdr 463 :EPRKVVLHRGSTG T0288 17 :IGISIGGGAQ 1pdr 476 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIV T0288 85 :YN 1pdr 547 :PE Number of specific fragments extracted= 4 number of extra gaps= 0 total=4631 Number of alignments=1166 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 1 :SMVPGKVTLQKDAQN 1pdr 461 :TREPRKVVLHRGSTG T0288 17 :IGISIGGGAQ 1pdr 476 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIV T0288 85 :YNKLQ 1pdr 545 :YRPEE Number of specific fragments extracted= 4 number of extra gaps= 0 total=4635 Number of alignments=1167 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 2 :MVPGKVTLQKDAQN 1pdr 462 :REPRKVVLHRGSTG T0288 17 :IGISIGGGAQ 1pdr 476 :LGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIV T0288 85 :YNK 1pdr 545 :YRP Number of specific fragments extracted= 4 number of extra gaps= 0 total=4639 Number of alignments=1168 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=4641 Number of alignments=1169 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEE T0288 92 :KV 1pdr 554 :HA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4644 Number of alignments=1170 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE T0288 92 :KV 1pdr 554 :HA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4647 Number of alignments=1171 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRP Number of specific fragments extracted= 2 number of extra gaps= 0 total=4649 Number of alignments=1172 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 8 :TLQKDAQNLIGISIGGGAQ 1pdr 467 :VVLHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTI Number of specific fragments extracted= 2 number of extra gaps= 0 total=4651 Number of alignments=1173 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1pdr 465 :RKVVLHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4653 Number of alignments=1174 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4655 Number of alignments=1175 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGED T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1pdr 486 :GEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4657 Number of alignments=1176 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1iu0A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1iu0A expands to /projects/compbio/data/pdb/1iu0.pdb.gz 1iu0A:# T0288 read from 1iu0A/merged-a2m # 1iu0A read from 1iu0A/merged-a2m # adding 1iu0A to template set # found chain 1iu0A in template set T0288 17 :IGISIGGGAQYC 1iu0A 15 :LGFSIAGGTDNP T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1iu0A 32 :PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4659 Number of alignments=1177 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set T0288 8 :TLQKDA 1iu0A 7 :TLERGN T0288 15 :NLIGISIGGGAQY 1iu0A 13 :SGLGFSIAGGTDN T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1iu0A 32 :PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4662 Number of alignments=1178 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0288)L88 because last residue in template chain is (1iu0A)R91 T0288 3 :VPGKVTLQKDAQN 1iu0A 2 :EYEEITLERGNSG T0288 17 :IGISIGGGAQYCP 1iu0A 15 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1iu0A 33 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4665 Number of alignments=1179 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0288)L88 because last residue in template chain is (1iu0A)R91 T0288 3 :VPGKVTLQKDAQN 1iu0A 2 :EYEEITLERGNSG T0288 17 :IGISIGGGAQYCP 1iu0A 15 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1iu0A 33 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4668 Number of alignments=1180 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0288)L88 because last residue in template chain is (1iu0A)R91 T0288 3 :VPGKVTLQKDAQN 1iu0A 2 :EYEEITLERGNSG T0288 17 :IGISIGGGAQYCP 1iu0A 15 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1iu0A 33 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4671 Number of alignments=1181 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set T0288 4 :PGKVTLQKDAQN 1iu0A 3 :YEEITLERGNSG T0288 17 :IGISIGGGAQYCP 1iu0A 15 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1iu0A 33 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4674 Number of alignments=1182 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0288)K87 because last residue in template chain is (1iu0A)R91 T0288 3 :VPGKVTLQKDAQN 1iu0A 2 :EYEEITLERGNSG T0288 17 :IGISIGGGAQYCP 1iu0A 15 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1iu0A 33 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY T0288 85 :YN 1iu0A 89 :MR Number of specific fragments extracted= 4 number of extra gaps= 0 total=4678 Number of alignments=1183 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0288)K87 because last residue in template chain is (1iu0A)R91 T0288 3 :VPGKVTLQKDAQN 1iu0A 2 :EYEEITLERGNSG T0288 17 :IGISIGGGAQYCP 1iu0A 15 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1iu0A 33 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY T0288 86 :N 1iu0A 90 :R Number of specific fragments extracted= 4 number of extra gaps= 0 total=4682 Number of alignments=1184 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0288)M2 because first residue in template chain is (1iu0A)M1 T0288 3 :VPGKVTLQKDAQN 1iu0A 2 :EYEEITLERGNSG T0288 17 :IGISIGGGAQYCP 1iu0A 15 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1iu0A 33 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY Number of specific fragments extracted= 3 number of extra gaps= 0 total=4685 Number of alignments=1185 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set T0288 4 :PGKVTLQKDAQN 1iu0A 3 :YEEITLERGNSG T0288 17 :IGISIGGGAQYCP 1iu0A 15 :LGFSIAGGTDNPH T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1iu0A 33 :SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY Number of specific fragments extracted= 3 number of extra gaps= 0 total=4688 Number of alignments=1186 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0288)L88 because last residue in template chain is (1iu0A)R91 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTD T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1iu0A 30 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4690 Number of alignments=1187 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0288)L88 because last residue in template chain is (1iu0A)R91 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTD T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1iu0A 30 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4692 Number of alignments=1188 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTD T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1iu0A 30 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4694 Number of alignments=1189 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1iu0A 3 :YEEITLERGNSGLGFSIAGGTD T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1iu0A 30 :DDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYV Number of specific fragments extracted= 2 number of extra gaps= 0 total=4696 Number of alignments=1190 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n99A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1n99A/merged-a2m # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 86 :NKLQYYKV 1n99A 191 :RDRPFERT Number of specific fragments extracted= 5 number of extra gaps= 1 total=4701 Number of alignments=1191 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 86 :NKLQYYKV 1n99A 191 :RDRPFERT Number of specific fragments extracted= 5 number of extra gaps= 1 total=4706 Number of alignments=1192 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1n99A 115 :VILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM Number of specific fragments extracted= 4 number of extra gaps= 0 total=4710 Number of alignments=1193 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1n99A 114 :EVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4714 Number of alignments=1194 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 T0288 5 :GKVTLQKDAQNLIGISI 1n99A 113 :REVILCKDQDGKIGLRL T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1n99A 130 :KSIDNGIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4717 Number of alignments=1195 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 T0288 5 :GKVTLQKDAQNLIGISIGGG 1n99A 113 :REVILCKDQDGKIGLRLKSI T0288 28 :CPCLYIVQVFDNTPAALDGT 1n99A 133 :DNGIFVQLVQANSPASLVGL T0288 49 :AAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 1n99A 153 :RFGDQVLQINGENCAGWSSDKAHKVLKQAFGE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4720 Number of alignments=1196 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISI 1n99A 113 :REVILCKDQDGKIGLRL T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1n99A 130 :KSIDNGIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 86 :NKLQYYKV 1n99A 191 :RDRPFERT Number of specific fragments extracted= 5 number of extra gaps= 1 total=4725 Number of alignments=1197 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIG 1n99A 113 :REVILCKDQDGKIGLRLK T0288 26 :QYCPCLYIVQVFDNTPAALDG 1n99A 131 :SIDNGIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 86 :NKLQYY 1n99A 191 :RDRPFE Number of specific fragments extracted= 5 number of extra gaps= 1 total=4730 Number of alignments=1198 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 86 :NKLQYY 1n99A 191 :RDRPFE Number of specific fragments extracted= 5 number of extra gaps= 1 total=4735 Number of alignments=1199 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 86 :NKLQYY 1n99A 191 :RDRPFE Number of specific fragments extracted= 5 number of extra gaps= 1 total=4740 Number of alignments=1200 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISI 1n99A 113 :REVILCKDQDGKIGLRL T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1n99A 130 :KSIDNGIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 86 :NKLQY 1n99A 191 :RDRPF Number of specific fragments extracted= 5 number of extra gaps= 1 total=4745 Number of alignments=1201 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIG 1n99A 113 :REVILCKDQDGKIGLRLK T0288 26 :QYCPCLYIVQVFDNTPAALDG 1n99A 131 :SIDNGIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 86 :NKL 1n99A 191 :RDR Number of specific fragments extracted= 5 number of extra gaps= 1 total=4750 Number of alignments=1202 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 86 :NKLQY 1n99A 191 :RDRPF Number of specific fragments extracted= 5 number of extra gaps= 1 total=4755 Number of alignments=1203 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 86 :NKLQYY 1n99A 191 :RDRPFE Number of specific fragments extracted= 5 number of extra gaps= 1 total=4760 Number of alignments=1204 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISI 1n99A 113 :REVILCKDQDGKIGLRL T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1n99A 130 :KSIDNGIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 85 :YNKLQYYKV 1n99A 265 :VTITIMPAF Number of specific fragments extracted= 5 number of extra gaps= 1 total=4765 Number of alignments=1205 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISI 1n99A 113 :REVILCKDQDGKIGLRL T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1n99A 130 :KSIDNGIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 85 :YNKLQYYKV 1n99A 265 :VTITIMPAF Number of specific fragments extracted= 5 number of extra gaps= 1 total=4770 Number of alignments=1206 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)K87 because last residue in template chain is (1n99A)F273 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 85 :YN 1n99A 271 :PA Number of specific fragments extracted= 5 number of extra gaps= 1 total=4775 Number of alignments=1207 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 90 :YYKV 1n99A 270 :MPAF Number of specific fragments extracted= 5 number of extra gaps= 1 total=4780 Number of alignments=1208 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISI 1n99A 113 :REVILCKDQDGKIGLRL T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1n99A 130 :KSIDNGIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4784 Number of alignments=1209 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISI 1n99A 113 :REVILCKDQDGKIGLRL T0288 25 :AQYCPCLYIVQVFDNTPAALDG 1n99A 130 :KSIDNGIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4788 Number of alignments=1210 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM Number of specific fragments extracted= 4 number of extra gaps= 1 total=4792 Number of alignments=1211 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 85 :YNKLQYY 1n99A 193 :RPFERTI Number of specific fragments extracted= 5 number of extra gaps= 1 total=4797 Number of alignments=1212 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM T0288 87 :KLQYYKV 1n99A 191 :RDRPFER Number of specific fragments extracted= 4 number of extra gaps= 1 total=4801 Number of alignments=1213 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM T0288 87 :KLQYYKV 1n99A 191 :RDRPFER Number of specific fragments extracted= 4 number of extra gaps= 1 total=4805 Number of alignments=1214 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)G5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 6 :KVTLQ 1n99A 113 :REVIL T0288 11 :KDAQNLIGISIGGGAQ 1n99A 119 :KDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 86 :NKLQYYKV 1n99A 191 :RDRPFERT Number of specific fragments extracted= 6 number of extra gaps= 1 total=4811 Number of alignments=1215 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)G5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 6 :KVTLQK 1n99A 113 :REVILC T0288 12 :DAQNLIGISIGGGAQ 1n99A 120 :DQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE T0288 81 :VTI 1n99A 186 :ITM T0288 86 :NKLQYYKV 1n99A 191 :RDRPFERT Number of specific fragments extracted= 6 number of extra gaps= 1 total=4817 Number of alignments=1216 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKIT Number of specific fragments extracted= 3 number of extra gaps= 0 total=4820 Number of alignments=1217 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4823 Number of alignments=1218 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQA T0288 78 :KGEVTI 1n99A 183 :GEKITM T0288 86 :NKLQ 1n99A 191 :RDRP Number of specific fragments extracted= 5 number of extra gaps= 1 total=4828 Number of alignments=1219 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0288)P4 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1n99A 113 :REVILCKDQDGKIGLRLKSIDN T0288 30 :CLYIVQVFDNTPAALDG 1n99A 135 :GIFVQLVQANSPASLVG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 1n99A 152 :LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE T0288 81 :VTI 1n99A 186 :ITM T0288 86 :NKLQYYK 1n99A 191 :RDRPFER Number of specific fragments extracted= 5 number of extra gaps= 1 total=4833 Number of alignments=1220 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g9oA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1g9oA/merged-a2m # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=4837 Number of alignments=1221 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYK 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 4 number of extra gaps= 0 total=4841 Number of alignments=1222 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4845 Number of alignments=1223 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 4 :PGKVTLQKDAQN 1g9oA 12 :PRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4849 Number of alignments=1224 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=4853 Number of alignments=1225 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=4857 Number of alignments=1226 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4861 Number of alignments=1227 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 4 :PGKVTLQKDAQN 1g9oA 12 :PRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4865 Number of alignments=1228 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVP 1g9oA 9 :RMLP T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1g9oA 13 :RLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=4869 Number of alignments=1229 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVP 1g9oA 9 :RMLP T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1g9oA 13 :RLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=4873 Number of alignments=1230 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1g9oA 13 :RLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=4876 Number of alignments=1231 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1g9oA 13 :RLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=4879 Number of alignments=1232 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQK 1g9oA 9 :RMLPRLCCLEK T0288 13 :AQNLIGISIGGGAQ 1g9oA 20 :GPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALD 1g9oA 34 :KLGQYIRLVEPGSPAEKA T0288 47 :TVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1g9oA 52 :GLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET T0288 91 :YKV 1g9oA 97 :EQL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4884 Number of alignments=1233 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 4 :PGKVTLQK 1g9oA 12 :PRLCCLEK T0288 13 :AQNLIGISIGGGAQ 1g9oA 20 :GPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALD 1g9oA 34 :KLGQYIRLVEPGSPAEKA T0288 47 :TVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1g9oA 52 :GLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4888 Number of alignments=1234 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 32 :YIVQVFDNTPAALDG 1g9oA 38 :YIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQ 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4890 Number of alignments=1235 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 31 :LYIVQVFDNTPAALDG 1g9oA 37 :QYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAA Number of specific fragments extracted= 2 number of extra gaps= 0 total=4892 Number of alignments=1236 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD T0288 92 :KV 1g9oA 98 :QL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4897 Number of alignments=1237 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD T0288 92 :KV 1g9oA 98 :QL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4902 Number of alignments=1238 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD T0288 92 :KV 1g9oA 98 :QL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4907 Number of alignments=1239 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD T0288 92 :KV 1g9oA 98 :QL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4912 Number of alignments=1240 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD Number of specific fragments extracted= 4 number of extra gaps= 0 total=4916 Number of alignments=1241 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 2 :MVPGKVTLQKDAQN 1g9oA 10 :MLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP Number of specific fragments extracted= 4 number of extra gaps= 0 total=4920 Number of alignments=1242 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=4924 Number of alignments=1243 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 2 :MVPGKVTLQKDAQN 1g9oA 10 :MLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=4928 Number of alignments=1244 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL T0288 85 :YNKLQYYKV 1g9oA 91 :VDPETDEQL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4933 Number of alignments=1245 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL T0288 85 :YNKLQYYKV 1g9oA 91 :VDPETDEQL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4938 Number of alignments=1246 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL T0288 85 :YNKLQYYKV 1g9oA 91 :VDPETDEQL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4943 Number of alignments=1247 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL T0288 85 :YNKLQYYKV 1g9oA 91 :VDPETDEQL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4948 Number of alignments=1248 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL T0288 85 :YN 1g9oA 93 :PE Number of specific fragments extracted= 5 number of extra gaps= 0 total=4953 Number of alignments=1249 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 2 :MVPGKVTLQKDAQN 1g9oA 10 :MLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL T0288 85 :YN 1g9oA 93 :PE Number of specific fragments extracted= 5 number of extra gaps= 0 total=4958 Number of alignments=1250 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL T0288 85 :YNKL 1g9oA 93 :PETD T0288 91 :YK 1g9oA 97 :EQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=4964 Number of alignments=1251 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMVPGKVTLQKDAQN 1g9oA 9 :RMLPRLCCLEKGPNG T0288 17 :IGISIGGGAQ 1g9oA 24 :YGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL T0288 85 :YNKL 1g9oA 93 :PETD Number of specific fragments extracted= 5 number of extra gaps= 0 total=4969 Number of alignments=1252 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1g9oA)R9 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYK 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4972 Number of alignments=1253 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 1 :SMV 1g9oA 9 :RML T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1g9oA 12 :PRLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYY 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD T0288 92 :KV 1g9oA 98 :QL Number of specific fragments extracted= 5 number of extra gaps= 0 total=4977 Number of alignments=1254 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1g9oA)R9 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE T0288 90 :YYKV 1g9oA 96 :DEQL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4981 Number of alignments=1255 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1g9oA)R9 T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE T0288 90 :YYKV 1g9oA 96 :DEQL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4985 Number of alignments=1256 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1g9oA 14 :LCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=4988 Number of alignments=1257 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1g9oA 13 :RLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4991 Number of alignments=1258 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQ 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=4994 Number of alignments=1259 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEKG T0288 28 :CPCLYIVQVFDNTPAALDG 1g9oA 34 :KLGQYIRLVEPGSPAEKAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQYYKV 1g9oA 53 :LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=4997 Number of alignments=1260 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1l6oA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1l6oA expands to /projects/compbio/data/pdb/1l6o.pdb.gz 1l6oA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0288 read from 1l6oA/merged-a2m # 1l6oA read from 1l6oA/merged-a2m # adding 1l6oA to template set # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0288)K92 because last residue in template chain is (1l6oA)H345 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5010 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0288)K92 because last residue in template chain is (1l6oA)H345 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5023 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV Number of specific fragments extracted= 11 number of extra gaps= 11 total=5034 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 T0288 6 :K 1l6oA 254 :T T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV Number of specific fragments extracted= 12 number of extra gaps= 11 total=5046 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0288)K92 because last residue in template chain is (1l6oA)H345 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5059 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)K92 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0288 1 :S 1l6oA 251 :M T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 12 total=5073 Number of alignments=1261 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV Number of specific fragments extracted= 12 number of extra gaps= 11 total=5085 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 T0288 5 :GK 1l6oA 253 :IT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV Number of specific fragments extracted= 12 number of extra gaps= 11 total=5097 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGG 1l6oA 269 :IVG T0288 25 :AQY 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I Number of specific fragments extracted= 10 number of extra gaps= 10 total=5107 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K72 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)M73 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 65 :KTKVEVA 1l6oA 318 :DDAVRVL T0288 74 :IQEVKGEVT 1l6oA 327 :IVHKPGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 11 number of extra gaps= 12 total=5118 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :YCP 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5131 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :YCP 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5144 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :YCP 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5157 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGG 1l6oA 269 :IVG T0288 25 :AQY 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5170 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :YCP 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5183 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :YCP 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5196 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :YCP 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5209 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0288)K92 because last residue in template chain is (1l6oA)H345 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGG 1l6oA 269 :IVG T0288 25 :AQY 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5222 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0288)K92 because last residue in template chain is (1l6oA)H345 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :YCP 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5235 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0288)K92 because last residue in template chain is (1l6oA)H345 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :YCP 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5248 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)K87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because last residue in template chain is (1l6oA)H345 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :YCP 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 86 :N 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5261 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)N86 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)K87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)L88 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0288)Q89 because last residue in template chain is (1l6oA)H345 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGG 1l6oA 269 :IVG T0288 25 :AQY 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV Number of specific fragments extracted= 12 number of extra gaps= 12 total=5273 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 T0288 6 :K 1l6oA 254 :T T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :YCP 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV Number of specific fragments extracted= 12 number of extra gaps= 11 total=5285 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 T0288 5 :GK 1l6oA 253 :IT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :YCP 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV Number of specific fragments extracted= 12 number of extra gaps= 11 total=5297 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)K87 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :YCP 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 86 :N 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5310 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)N86 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)K87 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGG 1l6oA 269 :IVG T0288 25 :AQY 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV Number of specific fragments extracted= 12 number of extra gaps= 12 total=5322 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0288)K92 because last residue in template chain is (1l6oA)H345 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5335 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0288)K92 because last residue in template chain is (1l6oA)H345 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5348 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0288)K92 because last residue in template chain is (1l6oA)H345 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5361 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)G5 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)K6 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)Q10 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)K11 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)Q14 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)N15 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)G18 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)G23 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)G24 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0288)K92 because last residue in template chain is (1l6oA)H345 T0288 1 :SMVP 1l6oA 251 :MIIT T0288 7 :VTL 1l6oA 257 :LNM T0288 16 :L 1l6oA 266 :G T0288 19 :ISIG 1l6oA 269 :IVGQ T0288 25 :AQY 1l6oA 275 :ERG T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5374 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 T0288 5 :GK 1l6oA 253 :IT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I Number of specific fragments extracted= 11 number of extra gaps= 10 total=5385 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 T0288 6 :K 1l6oA 254 :T T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :VKGEV 1l6oA 327 :IVHKP Number of specific fragments extracted= 11 number of extra gaps= 10 total=5396 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0288)K92 because last residue in template chain is (1l6oA)H345 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5409 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0288)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0288)T8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0288)D12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0288)A13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0288)Q14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0288)N15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0288)L16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0288)I17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0288)I19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0288)S20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0288)A25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0288)Q26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0288)C28 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0288)P29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0288)C30 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0288)A42 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0288)A43 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0288)N58 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0288)G59 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0288)S61 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0288)I62 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0288)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0288)K65 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0288)T66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0288)Q75 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0288)E76 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0288)I83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0288)H84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0288)Y85 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0288)N86 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0288)L88 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0288)Q89 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0288)Y90 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0288)Y91 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 Warning: unaligning (T0288)K92 because last residue in template chain is (1l6oA)H345 T0288 4 :PGK 1l6oA 252 :IIT T0288 9 :LQK 1l6oA 257 :LNM T0288 18 :G 1l6oA 266 :G T0288 21 :IGGG 1l6oA 269 :IVGQ T0288 27 :Y 1l6oA 277 :G T0288 31 :LYIVQVFDNTP 1l6oA 281 :IYIGSIMKGGA T0288 44 :LDGTVAAGDEITGV 1l6oA 294 :ADGRIEPGDMLLQV T0288 60 :R 1l6oA 310 :I T0288 63 :K 1l6oA 313 :E T0288 67 :KVEVAKMI 1l6oA 317 :NDDAVRVL T0288 77 :V 1l6oA 327 :I T0288 78 :KGEVT 1l6oA 331 :PGPIV T0288 87 :K 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5422 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q3oA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1q3oA/merged-a2m # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)Y91 because last residue in template chain is (1q3oA)H687 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYCPC 1q3oA 586 :IIKEKTVLLQKKDSEGFGFVLRGAKAQTPI T0288 31 :LYIVQVFDNTPAALDG 1q3oA 628 :QYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 3 number of extra gaps= 0 total=5425 Number of alignments=1262 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)Y91 because last residue in template chain is (1q3oA)H687 T0288 2 :M 1q3oA 585 :Y T0288 3 :VPGKVTLQKDAQNLIGISIGGGAQYCPC 1q3oA 588 :KEKTVLLQKKDSEGFGFVLRGAKAQTPI T0288 31 :LYIVQVFDNTPAALDG 1q3oA 628 :QYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=5429 Number of alignments=1263 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 7 :VTLQKDAQNLIGISIGGGAQYCPC 1q3oA 592 :VLLQKKDSEGFGFVLRGAKAQTPI T0288 31 :LYIVQVFDNTPAALDG 1q3oA 628 :QYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5432 Number of alignments=1264 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCPC 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKAQTPI T0288 31 :LYIVQVFDNTPAALDG 1q3oA 628 :QYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5435 Number of alignments=1265 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)Y90 because last residue in template chain is (1q3oA)H687 T0288 1 :SMVPGK 1q3oA 584 :DYIIKE T0288 7 :VTLQKDAQNLIGISIGGGAQY 1q3oA 592 :VLLQKKDSEGFGFVLRGAKAQ T0288 28 :CPCLYIVQVFDNTPAALDG 1q3oA 625 :PALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5439 Number of alignments=1266 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 1 :SMVPGK 1q3oA 584 :DYIIKE T0288 7 :VTLQKDAQNLIGISIGGGAQY 1q3oA 592 :VLLQKKDSEGFGFVLRGAKAQ T0288 28 :CPCLYIVQVFDNTPAALDG 1q3oA 625 :PALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5443 Number of alignments=1267 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 7 :VTLQKDAQNLIGISIGGGAQY 1q3oA 592 :VLLQKKDSEGFGFVLRGAKAQ T0288 28 :CPCLYIVQVFDNTPAALDG 1q3oA 625 :PALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5446 Number of alignments=1268 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 6 :KVTLQKDAQNLIGISIGGGAQY 1q3oA 591 :TVLLQKKDSEGFGFVLRGAKAQ T0288 28 :CPCLYIVQVFDNTPAALDG 1q3oA 625 :PALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5449 Number of alignments=1269 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)Y91 because last residue in template chain is (1q3oA)H687 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1q3oA 586 :IIKEKTVLLQKKDSEGFGFVLRGAKA T0288 27 :YCPCLYIVQVFDNTPAALDG 1q3oA 624 :FPALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMV T0288 87 :KLQ 1q3oA 680 :KVV T0288 90 :Y 1q3oA 686 :R Number of specific fragments extracted= 5 number of extra gaps= 0 total=5454 Number of alignments=1270 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)Y91 because last residue in template chain is (1q3oA)H687 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1q3oA 586 :IIKEKTVLLQKKDSEGFGFVLRGAKA T0288 27 :YCPCLYIVQVFDNTPAALDG 1q3oA 624 :FPALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK T0288 88 :LQ 1q3oA 681 :VV T0288 90 :Y 1q3oA 686 :R Number of specific fragments extracted= 5 number of extra gaps= 0 total=5459 Number of alignments=1271 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 7 :VTLQKDAQNLIGISIGGGAQ 1q3oA 592 :VLLQKKDSEGFGFVLRGAKA T0288 27 :YCPCLYIVQVFDNTPAALDG 1q3oA 624 :FPALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5462 Number of alignments=1272 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1q3oA 591 :TVLLQKKDSEGFGFVLRGAKA T0288 27 :YCPCLYIVQVFDNTPAALDG 1q3oA 624 :FPALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5465 Number of alignments=1273 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 29 :PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQE 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=5466 Number of alignments=1274 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQE 1q3oA 624 :FPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=5467 Number of alignments=1275 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)Y91 because last residue in template chain is (1q3oA)H687 T0288 1 :SMVP 1q3oA 584 :DYII T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=5471 Number of alignments=1276 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)Y91 because last residue in template chain is (1q3oA)H687 T0288 1 :SMVP 1q3oA 584 :DYII T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=5475 Number of alignments=1277 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1q3oA)D584 Warning: unaligning (T0288)Y91 because last residue in template chain is (1q3oA)H687 T0288 3 :VP 1q3oA 585 :YI T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=5479 Number of alignments=1278 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1q3oA)D584 Warning: unaligning (T0288)Y91 because last residue in template chain is (1q3oA)H687 T0288 3 :VP 1q3oA 585 :YI T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=5483 Number of alignments=1279 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 587 :IKEKTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5486 Number of alignments=1280 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 589 :EKTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM Number of specific fragments extracted= 3 number of extra gaps= 0 total=5489 Number of alignments=1281 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)Y91 because last residue in template chain is (1q3oA)H687 T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 3 number of extra gaps= 0 total=5492 Number of alignments=1282 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)Y91 because last residue in template chain is (1q3oA)H687 T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 3 number of extra gaps= 0 total=5495 Number of alignments=1283 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 1 :SMVP 1q3oA 584 :DYII T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK Number of specific fragments extracted= 4 number of extra gaps= 0 total=5499 Number of alignments=1284 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 1 :SMVP 1q3oA 584 :DYII T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK Number of specific fragments extracted= 4 number of extra gaps= 0 total=5503 Number of alignments=1285 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)L88 because last residue in template chain is (1q3oA)H687 T0288 1 :SMV 1q3oA 584 :DYI T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK T0288 85 :YNK 1q3oA 684 :VTR Number of specific fragments extracted= 5 number of extra gaps= 0 total=5508 Number of alignments=1286 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1q3oA)D584 Warning: unaligning (T0288)L88 because last residue in template chain is (1q3oA)H687 T0288 3 :VP 1q3oA 585 :YI T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK T0288 85 :YNK 1q3oA 684 :VTR Number of specific fragments extracted= 5 number of extra gaps= 0 total=5513 Number of alignments=1287 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 587 :IKEKTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5516 Number of alignments=1288 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 589 :EKTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5519 Number of alignments=1289 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK T0288 85 :YNK 1q3oA 684 :VTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=5523 Number of alignments=1290 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)L88 because last residue in template chain is (1q3oA)H687 T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCP 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKAQTP T0288 30 :CLYIVQVFDNTPAALDG 1q3oA 627 :LQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK T0288 85 :YNK 1q3oA 684 :VTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=5527 Number of alignments=1291 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)Y91 because last residue in template chain is (1q3oA)H687 T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1q3oA 587 :IKEKTVLLQKKDSEGFGFVLRGAKA T0288 27 :YCPCLYIVQVFDNTPAALDG 1q3oA 624 :FPALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 3 number of extra gaps= 0 total=5530 Number of alignments=1292 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)Y90 because last residue in template chain is (1q3oA)H687 T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1q3oA 587 :IKEKTVLLQKKDSEGFGFVLRGAKA T0288 27 :YCPCLYIVQVFDNTPAALDG 1q3oA 624 :FPALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV T0288 89 :Q 1q3oA 686 :R Number of specific fragments extracted= 4 number of extra gaps= 0 total=5534 Number of alignments=1293 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1q3oA)D584 Warning: unaligning (T0288)Y90 because last residue in template chain is (1q3oA)H687 T0288 4 :PG 1q3oA 585 :YI T0288 6 :KVTLQKDAQNLIGISIGGGAQ 1q3oA 591 :TVLLQKKDSEGFGFVLRGAKA T0288 27 :YCPCLYIVQVFDNTPAALDG 1q3oA 624 :FPALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV T0288 87 :KLQ 1q3oA 684 :VTR Number of specific fragments extracted= 5 number of extra gaps= 0 total=5539 Number of alignments=1294 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1q3oA)D584 Warning: unaligning (T0288)Y91 because last residue in template chain is (1q3oA)H687 T0288 4 :P 1q3oA 585 :Y T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKA T0288 27 :YCPCLYIVQVFDNTPAALDG 1q3oA 624 :FPALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=5543 Number of alignments=1295 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1q3oA 587 :IKEKTVLLQKKDSEGFGFVLRGAKA T0288 27 :YCPCLYIVQVFDNTPAALDG 1q3oA 624 :FPALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5546 Number of alignments=1296 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKA T0288 27 :YCPCLYIVQVFDNTPAALDG 1q3oA 624 :FPALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5549 Number of alignments=1297 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)Y91 because last residue in template chain is (1q3oA)H687 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQ 1q3oA 589 :EKTVLLQKKDSEGFGFVLRGAKA T0288 27 :YCPCLYIVQVFDNTPAALDG 1q3oA 624 :FPALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 3 number of extra gaps= 0 total=5552 Number of alignments=1298 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0288)Y91 because last residue in template chain is (1q3oA)H687 T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1q3oA 590 :KTVLLQKKDSEGFGFVLRGAKA T0288 27 :YCPCLYIVQVFDNTPAALDG 1q3oA 624 :FPALQYLESVDEGGVAWRAG T0288 48 :VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 1q3oA 644 :LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 3 number of extra gaps= 0 total=5555 Number of alignments=1299 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n7fA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1n7fA/merged-a2m # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 3 :VPGKVTLQKDAQN 1n7fA 669 :IIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5557 Number of alignments=1300 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 3 :VPGKVTLQKDAQN 1n7fA 669 :IIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5559 Number of alignments=1301 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0288 7 :VTLQKDAQN 1n7fA 673 :VELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1n7fA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTL Number of specific fragments extracted= 2 number of extra gaps= 0 total=5561 Number of alignments=1302 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0288 5 :GKVTLQKDAQN 1n7fA 671 :YTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7fA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5563 Number of alignments=1303 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1n7fA)A668 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVT T0288 88 :LQYYKV 1n7fA 748 :LKIKKQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=5565 Number of alignments=1304 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5566 Number of alignments=1305 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=5567 Number of alignments=1306 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0288 6 :KVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1n7fA 671 :YTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=5568 Number of alignments=1307 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5569 Number of alignments=1308 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0288 15 :NLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 680 :GPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5570 Number of alignments=1309 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 3 :VPGKVTLQKDAQN 1n7fA 669 :IIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5572 Number of alignments=1310 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 3 :VPGKVTLQKDAQN 1n7fA 669 :IIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5574 Number of alignments=1311 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 3 :VPGKVTLQK 1n7fA 669 :IIYTVELKR T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 678 :YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5576 Number of alignments=1312 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 3 :VPGKVTLQK 1n7fA 669 :IIYTVELKR T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 678 :YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5578 Number of alignments=1313 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 3 :VPGKVTLQKDAQN 1n7fA 669 :IIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5580 Number of alignments=1314 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 3 :VPGKVTLQKDAQ 1n7fA 669 :IIYTVELKRYGG T0288 16 :LIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 681 :PLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5582 Number of alignments=1315 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 3 :VPGKVTLQK 1n7fA 669 :IIYTVELKR T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 678 :YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5584 Number of alignments=1316 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 3 :VPGKVTLQK 1n7fA 669 :IIYTVELKR T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 678 :YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5586 Number of alignments=1317 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0288)Y85 because last residue in template chain is (1n7fA)Q753 T0288 3 :VPGKVTLQKDAQN 1n7fA 669 :IIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7fA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5588 Number of alignments=1318 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 T0288 3 :VPGKVTLQKDAQN 1n7fA 669 :IIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7fA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5590 Number of alignments=1319 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 T0288 3 :VPGKVTLQK 1n7fA 669 :IIYTVELKR T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7fA 678 :YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5592 Number of alignments=1320 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 T0288 3 :VPGKVTLQK 1n7fA 669 :IIYTVELKR T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7fA 678 :YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5594 Number of alignments=1321 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 T0288 3 :VPGKVTLQKDAQN 1n7fA 669 :IIYTVELKRYGGP T0288 17 :IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7fA 682 :LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5596 Number of alignments=1322 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0288 4 :PGKVTLQKDA 1n7fA 670 :IYTVELKRYG T0288 15 :NLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7fA 680 :GPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5598 Number of alignments=1323 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 T0288 3 :VPGKVTLQK 1n7fA 669 :IIYTVELKR T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7fA 678 :YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5600 Number of alignments=1324 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)M2 because first residue in template chain is (1n7fA)A668 T0288 3 :VPGKVTLQK 1n7fA 669 :IIYTVELKR T0288 13 :AQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1n7fA 678 :YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK Number of specific fragments extracted= 2 number of extra gaps= 0 total=5602 Number of alignments=1325 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)P4 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 670 :IYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5603 Number of alignments=1326 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5604 Number of alignments=1327 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5605 Number of alignments=1328 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5606 Number of alignments=1329 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1n7fA 670 :IYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTL Number of specific fragments extracted= 1 number of extra gaps= 0 total=5607 Number of alignments=1330 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0288 5 :GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1n7fA 670 :IYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=5608 Number of alignments=1331 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5609 Number of alignments=1332 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0288)L88 because last residue in template chain is (1n7fA)Q753 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=5610 Number of alignments=1333 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ihjA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0288 read from 1ihjA/merged-a2m # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGG 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRG T0288 25 :AQ 1ihjA 38 :KD T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 45 :TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 1 total=5613 Number of alignments=1334 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGG 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRG T0288 25 :AQ 1ihjA 38 :KD T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 45 :TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 1 total=5616 Number of alignments=1335 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGG 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRG T0288 25 :AQ 1ihjA 38 :KD T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1ihjA 45 :TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELE Number of specific fragments extracted= 3 number of extra gaps= 1 total=5619 Number of alignments=1336 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 T0288 4 :PGKVTLQKDAQNLIGISIGGG 1ihjA 15 :IHMVTLDKTGKKSFGICIVRG T0288 25 :AQ 1ihjA 38 :KD T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1ihjA 45 :TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELE Number of specific fragments extracted= 3 number of extra gaps= 1 total=5622 Number of alignments=1337 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYC 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGEVKD T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=5624 Number of alignments=1338 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYC 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGEVKD T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=5626 Number of alignments=1339 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 T0288 7 :VTLQKDAQNLIGISIGGGAQYC 1ihjA 18 :VTLDKTGKKSFGICIVRGEVKD T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=5628 Number of alignments=1340 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 T0288 6 :KVTLQKDAQNLIGISIGGGAQYC 1ihjA 17 :MVTLDKTGKKSFGICIVRGEVKD T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELE Number of specific fragments extracted= 2 number of extra gaps= 1 total=5630 Number of alignments=1341 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGG 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRG T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=5632 Number of alignments=1342 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 2 :MVPGKVTLQKDAQNLIGISIGGG 1ihjA 13 :ELIHMVTLDKTGKKSFGICIVRG T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=5634 Number of alignments=1343 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0288 7 :VTLQKDAQNLIGISIGGG 1ihjA 18 :VTLDKTGKKSFGICIVRG T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=5636 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)A25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0288 5 :GKVTLQKDAQNLIGISIGGG 1ihjA 16 :HMVTLDKTGKKSFGICIVRG T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=5638 Number of alignments=1344 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQK 1ihjA 12 :GELIHMVTLDK T0288 13 :AQNLIGISIGGGAQ 1ihjA 24 :GKKSFGICIVRGEV T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 45 :TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 0 total=5641 Number of alignments=1345 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0288 4 :PGKVTLQK 1ihjA 15 :IHMVTLDK T0288 13 :AQNLIGISIGGGAQ 1ihjA 24 :GKKSFGICIVRGEV T0288 28 :CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1ihjA 45 :TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI Number of specific fragments extracted= 3 number of extra gaps= 0 total=5644 Number of alignments=1346 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0288 31 :LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1ihjA 48 :IFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=5645 Number of alignments=1347 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0288 7 :VTLQKDAQNLIGISIGGGA 1ihjA 18 :VTLDKTGKKSFGICIVRGE T0288 26 :QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1ihjA 43 :TKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL Number of specific fragments extracted= 2 number of extra gaps= 0 total=5647 Number of alignments=1348 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYC 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGEVKD T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 2 number of extra gaps= 1 total=5649 Number of alignments=1349 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGE T0288 28 :C 1ihjA 39 :D T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 1 total=5652 Number of alignments=1350 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGE T0288 26 :Q 1ihjA 39 :D T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 1 total=5655 Number of alignments=1351 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGE T0288 26 :Q 1ihjA 39 :D T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 1 total=5658 Number of alignments=1352 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYC 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGEVKD T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 2 number of extra gaps= 1 total=5660 Number of alignments=1353 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 T0288 3 :VPGKVTLQKDAQNLIGISIGGGA 1ihjA 14 :LIHMVTLDKTGKKSFGICIVRGE T0288 28 :C 1ihjA 39 :D T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 1 total=5663 Number of alignments=1354 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGE T0288 26 :Q 1ihjA 39 :D T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 1 total=5666 Number of alignments=1355 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGE T0288 26 :Q 1ihjA 39 :D T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 1 total=5669 Number of alignments=1356 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)Y85 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYC 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGEVKD T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELE Number of specific fragments extracted= 2 number of extra gaps= 1 total=5671 Number of alignments=1357 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)Y85 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYC 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGEVKD T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELE Number of specific fragments extracted= 2 number of extra gaps= 1 total=5673 Number of alignments=1358 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0288)Y85 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGE T0288 26 :Q 1ihjA 39 :D T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELE Number of specific fragments extracted= 3 number of extra gaps= 1 total=5676 Number of alignments=1359 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0288)Y85 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGE T0288 26 :Q 1ihjA 39 :D T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELE Number of specific fragments extracted= 3 number of extra gaps= 1 total=5679 Number of alignments=1360 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQYC 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGEVKD T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL Number of specific fragments extracted= 2 number of extra gaps= 1 total=5681 Number of alignments=1361 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 T0288 4 :PGKVTLQKDAQNLIGISIGGGAQYC 1ihjA 15 :IHMVTLDKTGKKSFGICIVRGEVKD T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELE Number of specific fragments extracted= 2 number of extra gaps= 1 total=5683 Number of alignments=1362 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGE T0288 26 :Q 1ihjA 39 :D T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELE Number of specific fragments extracted= 3 number of extra gaps= 1 total=5686 Number of alignments=1363 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)Y27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0288)C28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0288)P29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGA 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGE T0288 26 :Q 1ihjA 39 :D T0288 30 :CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 1ihjA 47 :GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELE Number of specific fragments extracted= 3 number of extra gaps= 1 total=5689 Number of alignments=1364 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGEV T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 44 :KTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 2 number of extra gaps= 0 total=5691 Number of alignments=1365 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)V3 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 4 :P 1ihjA 13 :E T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1ihjA 16 :HMVTLDKTGKKSFGICIVRGEV T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 44 :KTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 0 total=5694 Number of alignments=1366 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGEV T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 44 :KTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 2 number of extra gaps= 0 total=5696 Number of alignments=1367 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGEV T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 44 :KTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 2 number of extra gaps= 0 total=5698 Number of alignments=1368 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGEV T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 1ihjA 44 :KTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL Number of specific fragments extracted= 2 number of extra gaps= 0 total=5700 Number of alignments=1369 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0288 5 :GKVTLQKDAQNLIGISIGGGAQ 1ihjA 16 :HMVTLDKTGKKSFGICIVRGEV T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 1ihjA 44 :KTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI Number of specific fragments extracted= 2 number of extra gaps= 0 total=5702 Number of alignments=1370 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 1 :SMVPGKVTLQKDAQNLIGISIGGGAQ 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGEV T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 44 :KTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 2 number of extra gaps= 0 total=5704 Number of alignments=1371 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0288)L88 because last residue in template chain is (1ihjA)F105 T0288 2 :MVPGKVTLQKDAQNLIGISIGGGAQ 1ihjA 13 :ELIHMVTLDKTGKKSFGICIVRGEV T0288 27 :YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 1ihjA 44 :KTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 2 number of extra gaps= 0 total=5706 Number of alignments=1372 # command:NUMB_ALIGNS: 1372 evalue: 0 0.0000, weight 30.6563 evalue: 1 0.0000, weight 30.3564 evalue: 2 0.0000, weight 29.9808 evalue: 3 0.0000, weight 29.8181 evalue: 4 0.0000, weight 29.3603 evalue: 5 0.0000, weight 24.4043 evalue: 6 0.0000, weight 24.3475 evalue: 7 0.0000, weight 22.6082 evalue: 8 0.0000, weight 18.1511 evalue: 9 0.0000, weight 14.8448 evalue: 10 0.0000, weight 38.0507 evalue: 11 0.0000, weight 17.4400 evalue: 12 7.9156, weight 0.1965 evalue: 13 8.1521, weight 0.1913 evalue: 14 9.0407, weight 0.1740 evalue: 15 9.3852, weight 0.1681 evalue: 16 10.2420, weight 0.1551 evalue: 17 10.6890, weight 0.1491 evalue: 18 11.3400, weight 0.1411 evalue: 19 11.4670, weight 0.1396 evalue: 20 0.0000, weight 32.2937 evalue: 21 0.0000, weight 31.5541 evalue: 22 0.0000, weight 31.1126 evalue: 23 0.0000, weight 29.9714 evalue: 24 0.0000, weight 25.5499 evalue: 25 0.0000, weight 25.4095 evalue: 26 0.0000, weight 25.3754 evalue: 27 0.0000, weight 25.3132 evalue: 28 0.0000, weight 22.5463 evalue: 29 0.0000, weight 19.1475 evalue: 30 0.0000, weight 33.0010 evalue: 31 0.0000, weight 21.8828 evalue: 32 0.0000, weight 21.4079 evalue: 33 0.0000, weight 21.0025 evalue: 34 0.0000, weight 17.2190 evalue: 35 0.0000, weight 17.1329 evalue: 36 0.0000, weight 16.8761 evalue: 37 0.0000, weight 15.4847 evalue: 38 0.0000, weight 12.1364 evalue: 39 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RES2ATOM 20 147 RES2ATOM 24 167 RES2ATOM 25 172 RES2ATOM 26 181 RES2ATOM 27 193 RES2ATOM 28 199 RES2ATOM 29 206 RES2ATOM 30 212 RES2ATOM 31 220 RES2ATOM 32 232 RES2ATOM 33 240 RES2ATOM 34 247 RES2ATOM 35 256 RES2ATOM 36 263 RES2ATOM 37 274 RES2ATOM 38 282 RES2ATOM 39 290 RES2ATOM 40 297 RES2ATOM 41 304 RES2ATOM 42 309 RES2ATOM 43 314 RES2ATOM 44 322 RES2ATOM 46 334 RES2ATOM 47 341 RES2ATOM 48 348 RES2ATOM 49 353 RES2ATOM 51 362 RES2ATOM 52 370 RES2ATOM 53 379 RES2ATOM 54 387 RES2ATOM 56 398 RES2ATOM 57 405 RES2ATOM 59 417 RES2ATOM 60 428 RES2ATOM 61 434 RES2ATOM 62 442 RES2ATOM 64 455 RES2ATOM 65 464 RES2ATOM 66 471 RES2ATOM 67 480 RES2ATOM 68 487 RES2ATOM 69 496 RES2ATOM 70 503 RES2ATOM 71 508 RES2ATOM 72 517 RES2ATOM 73 525 RES2ATOM 74 533 RES2ATOM 75 542 RES2ATOM 76 551 RES2ATOM 77 558 RES2ATOM 79 571 RES2ATOM 80 580 RES2ATOM 81 587 RES2ATOM 82 594 RES2ATOM 83 602 RES2ATOM 84 612 RES2ATOM 85 624 RES2ATOM 86 632 RES2ATOM 87 641 RES2ATOM 88 649 RES2ATOM 89 658 RES2ATOM 90 670 RES2ATOM 91 682 RES2ATOM 92 691 Constraint 233 380 5.4337 6.7921 13.5843 2851.1147 Constraint 257 354 5.0038 6.2547 12.5095 2848.0701 Constraint 233 363 3.7843 4.7304 9.4608 2846.5344 Constraint 233 354 4.5258 5.6573 11.3145 2845.9573 Constraint 233 342 4.8933 6.1166 12.2332 2833.7607 Constraint 257 342 4.7147 5.8933 11.7866 2827.7771 Constraint 233 349 5.5302 6.9127 13.8254 2793.3000 Constraint 399 526 5.0287 6.2859 12.5717 2791.6553 Constraint 241 354 5.1329 6.4161 12.8323 2784.1479 Constraint 248 354 4.9719 6.2148 12.4297 2769.3777 Constraint 399 518 4.1826 5.2283 10.4565 2765.5757 Constraint 221 371 4.5071 5.6338 11.2676 2755.9922 Constraint 418 518 4.9280 6.1600 12.3199 2750.1282 Constraint 221 380 5.7827 7.2284 14.4568 2737.0774 Constraint 142 241 3.8140 4.7675 9.5351 2694.0215 Constraint 134 233 4.3261 5.4076 10.8151 2693.7778 Constraint 142 233 5.6822 7.1027 14.2054 2689.8682 Constraint 406 588 4.3590 5.4487 10.8975 2683.3103 Constraint 221 363 5.4529 6.8162 13.6323 2682.9373 Constraint 213 380 3.8550 4.8187 9.6374 2677.8362 Constraint 148 241 5.0516 6.3144 12.6289 2676.6909 Constraint 148 233 4.8946 6.1182 12.2364 2676.6909 Constraint 142 248 3.4691 4.3363 8.6727 2676.6011 Constraint 134 257 4.2718 5.3397 10.6795 2676.3574 Constraint 134 264 5.5272 6.9090 13.8179 2675.6611 Constraint 148 380 5.5221 6.9026 13.8052 2668.2732 Constraint 406 581 5.0179 6.2724 12.5447 2664.6187 Constraint 406 552 4.9027 6.1284 12.2569 2656.4749 Constraint 134 342 5.0412 6.3015 12.6029 2653.8789 Constraint 213 435 4.4884 5.6104 11.2209 2646.1094 Constraint 122 305 4.5132 5.6414 11.2829 2625.4326 Constraint 134 305 3.5913 4.4892 8.9783 2617.1021 Constraint 134 248 5.3581 6.6976 13.3953 2616.1570 Constraint 213 371 5.5573 6.9466 13.8932 2615.0366 Constraint 122 298 4.3972 5.4965 10.9929 2609.8801 Constraint 148 221 5.3323 6.6653 13.3306 2603.5688 Constraint 213 497 4.1006 5.1257 10.2514 2571.7622 Constraint 399 581 5.2585 6.5731 13.1462 2566.7251 Constraint 380 497 5.5496 6.9370 13.8740 2541.2234 Constraint 213 472 5.3685 6.7106 13.4212 2537.5359 Constraint 148 213 4.2429 5.3036 10.6071 2528.3010 Constraint 122 526 5.4036 6.7545 13.5089 2523.5662 Constraint 122 291 5.5564 6.9455 13.8910 2513.0381 Constraint 399 595 4.7026 5.8782 11.7565 2494.0212 Constraint 134 291 5.6951 7.1189 14.2378 2489.6680 Constraint 399 588 5.8045 7.2556 14.5113 2463.8843 Constraint 399 552 5.5008 6.8760 13.7521 2429.9727 Constraint 51 588 4.3291 5.4114 10.8228 2425.6780 Constraint 122 581 5.0238 6.2797 12.5595 2422.9602 Constraint 148 497 5.0104 6.2631 12.5261 2407.3628 Constraint 380 595 4.7205 5.9006 11.8013 2404.7607 Constraint 58 581 4.1976 5.2470 10.4940 2340.2566 Constraint 75 298 4.7438 5.9297 11.8595 2330.0769 Constraint 257 349 5.4566 6.8208 13.6416 2326.4712 Constraint 148 504 5.5209 6.9011 13.8023 2321.2219 Constraint 44 588 5.6869 7.1086 14.2173 2281.3545 Constraint 233 371 6.2364 7.7956 15.5911 2265.5684 Constraint 66 572 4.5583 5.6979 11.3958 2244.3811 Constraint 66 298 4.8474 6.0593 12.1186 2242.1274 Constraint 399 497 5.4970 6.8713 13.7425 2236.5229 Constraint 58 323 4.7202 5.9003 11.8005 2210.5850 Constraint 148 472 5.2823 6.6028 13.2056 2197.9106 Constraint 58 572 5.5510 6.9388 13.8775 2195.9600 Constraint 213 456 5.2696 6.5870 13.1741 2126.8069 Constraint 44 595 4.2375 5.2969 10.5937 2112.4673 Constraint 207 371 4.1022 5.1277 10.2555 2112.0356 Constraint 58 305 4.9939 6.2424 12.4849 2084.5581 Constraint 388 603 3.7679 4.7099 9.4197 2058.6978 Constraint 75 581 5.1978 6.4972 12.9945 2055.6824 Constraint 435 518 5.3846 6.7308 13.4616 2039.3365 Constraint 58 595 5.4553 6.8191 13.6382 2037.3732 Constraint 342 595 5.8963 7.3704 14.7407 2029.3492 Constraint 58 298 4.0055 5.0069 10.0137 2027.8585 Constraint 44 342 4.9055 6.1319 12.2637 2018.5361 Constraint 380 603 5.8498 7.3123 14.6246 1983.2629 Constraint 51 581 5.7061 7.1326 14.2653 1977.1244 Constraint 148 526 5.9097 7.3871 14.7742 1958.1172 Constraint 233 305 6.1408 7.6760 15.3521 1943.0781 Constraint 406 518 5.5831 6.9789 13.9578 1915.3815 Constraint 35 603 4.6220 5.7775 11.5550 1900.7075 Constraint 51 572 4.9446 6.1807 12.3615 1854.7557 Constraint 35 588 5.1458 6.4322 12.8645 1847.5321 Constraint 75 572 5.5968 6.9959 13.9919 1841.2397 Constraint 371 613 5.0799 6.3499 12.6998 1750.0363 Constraint 44 323 4.5021 5.6276 11.2553 1745.2523 Constraint 363 613 3.6502 4.5628 9.1255 1743.4058 Constraint 66 581 5.5102 6.8877 13.7754 1738.6667 Constraint 58 588 5.6315 7.0394 14.0787 1710.5076 Constraint 207 443 5.1096 6.3870 12.7741 1706.0439 Constraint 35 595 5.7833 7.2291 14.4583 1704.8646 Constraint 51 595 5.6591 7.0738 14.1477 1677.6740 Constraint 380 613 4.7377 5.9222 11.8444 1672.7494 Constraint 388 613 5.3831 6.7288 13.4577 1655.2263 Constraint 371 625 3.7849 4.7311 9.4622 1598.6987 Constraint 363 625 5.3910 6.7388 13.4776 1592.8088 Constraint 114 298 5.7482 7.1853 14.3706 1580.9264 Constraint 114 291 5.4404 6.8005 13.6010 1576.4672 Constraint 388 625 4.6959 5.8699 11.7399 1559.8711 Constraint 84 298 4.6001 5.7501 11.5002 1554.8099 Constraint 342 613 5.4871 6.8588 13.7176 1544.8713 Constraint 399 603 6.1753 7.7192 15.4383 1532.8870 Constraint 363 633 4.6044 5.7555 11.5111 1477.1356 Constraint 134 241 6.2032 7.7540 15.5080 1442.9110 Constraint 51 323 5.2814 6.6018 13.2035 1433.4030 Constraint 58 342 5.9934 7.4918 14.9836 1408.7802 Constraint 106 298 5.4760 6.8450 13.6900 1406.7039 Constraint 24 388 5.4984 6.8730 13.7460 1396.7091 Constraint 44 613 5.0064 6.2580 12.5161 1381.3496 Constraint 44 335 4.0136 5.0170 10.0341 1379.0212 Constraint 142 264 6.0088 7.5110 15.0219 1326.4843 Constraint 44 603 5.7389 7.1737 14.3473 1316.0992 Constraint 207 380 5.7023 7.1278 14.2557 1271.6205 Constraint 75 552 5.4140 6.7676 13.5351 1264.8339 Constraint 233 613 5.9847 7.4809 14.9617 1257.8240 Constraint 24 603 4.8827 6.1034 12.2069 1212.0184 Constraint 142 257 6.0951 7.6189 15.2378 1209.0851 Constraint 168 465 4.5148 5.6435 11.2871 1173.2850 Constraint 349 633 5.5412 6.9265 13.8530 1149.2740 Constraint 24 625 4.3639 5.4548 10.9097 1105.4797 Constraint 168 472 5.4518 6.8148 13.6296 1085.2997 Constraint 106 291 5.1210 6.4012 12.8024 1064.7601 Constraint 371 633 5.8887 7.3609 14.7217 1038.4388 Constraint 75 559 5.5620 6.9526 13.9051 1037.7997 Constraint 35 613 5.6803 7.1004 14.2007 1035.4119 Constraint 200 443 4.9929 6.2411 12.4822 1003.5037 Constraint 84 291 5.7667 7.2084 14.4169 985.8666 Constraint 24 613 5.5594 6.9492 13.8985 966.5693 Constraint 114 264 5.7381 7.1727 14.3454 964.6973 Constraint 371 642 4.9546 6.1932 12.3865 935.2368 Constraint 207 388 5.7414 7.1768 14.3536 929.2124 Constraint 207 435 5.5736 6.9671 13.9341 913.0233 Constraint 363 642 5.3254 6.6567 13.3134 887.1771 Constraint 122 552 6.0105 7.5132 15.0263 882.1635 Constraint 406 559 5.8799 7.3498 14.6997 857.8560 Constraint 207 456 5.7058 7.1323 14.2645 819.5803 Constraint 66 323 5.3758 6.7198 13.4396 764.8411 Constraint 173 465 4.4164 5.5205 11.0410 754.8361 Constraint 17 625 5.5369 6.9212 13.8423 746.2019 Constraint 380 526 6.2053 7.7566 15.5131 713.2119 Constraint 168 456 5.3517 6.6897 13.3793 695.2106 Constraint 9 625 5.1914 6.4893 12.9786 679.7710 Constraint 9 633 5.0409 6.3011 12.6022 623.0442 Constraint 134 310 6.1585 7.6982 15.3964 611.1563 Constraint 97 298 4.8896 6.1120 12.2240 607.3397 Constraint 24 633 5.5334 6.9167 13.8335 597.3282 Constraint 106 534 5.3481 6.6851 13.3703 595.8240 Constraint 92 298 5.4067 6.7583 13.5166 581.6630 Constraint 173 472 5.0248 6.2810 12.5621 577.2397 Constraint 194 443 5.2916 6.6145 13.2289 568.9807 Constraint 44 305 6.0440 7.5550 15.1099 555.9929 Constraint 17 633 4.3912 5.4890 10.9779 535.6475 Constraint 97 291 5.2474 6.5593 13.1186 533.2826 Constraint 106 264 5.7308 7.1635 14.3270 532.7672 Constraint 406 595 5.4828 6.8535 13.7070 509.9726 Constraint 406 572 5.9249 7.4061 14.8122 481.6881 Constraint 213 443 5.7483 7.1854 14.3707 476.4420 Constraint 66 315 5.8906 7.3633 14.7265 457.7108 Constraint 51 335 4.7477 5.9347 11.8693 443.6962 Constraint 406 526 5.7474 7.1843 14.3685 442.7607 Constraint 182 472 4.7431 5.9288 11.8576 441.7063 Constraint 58 335 4.8593 6.0741 12.1482 433.0748 Constraint 349 642 5.4876 6.8596 13.7191 413.6813 Constraint 182 465 5.5541 6.9427 13.8854 410.3107 Constraint 335 613 6.2014 7.7517 15.5035 409.4773 Constraint 58 315 6.1404 7.6754 15.3509 406.9850 Constraint 84 572 5.4220 6.7775 13.5550 405.9106 Constraint 66 595 5.6310 7.0388 14.0776 400.8038 Constraint 66 588 5.0163 6.2704 12.5408 386.5419 Constraint 221 642 5.7504 7.1880 14.3760 382.4766 Constraint 84 581 5.5425 6.9282 13.8563 377.7433 Constraint 371 443 6.2069 7.7587 15.5174 376.2250 Constraint 194 371 5.7758 7.2197 14.4395 376.0681 Constraint 84 559 5.3861 6.7326 13.4652 375.7561 Constraint 380 625 6.1142 7.6427 15.2854 371.5726 Constraint 298 581 6.2588 7.8236 15.6471 369.7787 Constraint 51 342 4.8696 6.0870 12.1741 353.4254 Constraint 75 291 6.0410 7.5512 15.1025 349.6397 Constraint 51 613 5.2477 6.5596 13.1192 347.0403 Constraint 406 543 5.9569 7.4462 14.8923 334.8880 Constraint 9 642 5.0993 6.3741 12.7482 333.0241 Constraint 221 354 6.1058 7.6322 15.2645 330.7665 Constraint 349 613 5.6103 7.0129 14.0258 327.7124 Constraint 66 305 5.0470 6.3087 12.6175 324.5022 Constraint 213 388 5.9517 7.4397 14.8793 318.1384 Constraint 207 465 5.3686 6.7107 13.4214 317.0197 Constraint 388 595 6.2485 7.8106 15.6213 316.7923 Constraint 173 481 5.9666 7.4583 14.9165 314.5208 Constraint 106 552 5.5221 6.9026 13.8052 309.7043 Constraint 106 526 5.8120 7.2651 14.5301 306.5687 Constraint 363 595 6.2783 7.8479 15.6958 304.6422 Constraint 134 526 5.9498 7.4373 14.8746 303.7122 Constraint 114 552 5.9429 7.4287 14.8573 295.1693 Constraint 323 595 6.1868 7.7335 15.4670 284.4125 Constraint 200 435 5.3897 6.7371 13.4742 280.9590 Constraint 51 603 5.5123 6.8904 13.7807 275.9074 Constraint 200 465 5.7429 7.1786 14.3572 269.4132 Constraint 200 388 4.7840 5.9799 11.9599 267.2389 Constraint 35 625 5.3306 6.6633 13.3266 263.4818 Constraint 200 371 3.9718 4.9648 9.9296 256.9200 Constraint 213 504 5.7848 7.2310 14.4619 255.0753 Constraint 354 642 5.9497 7.4371 14.8743 253.5325 Constraint 35 633 5.6722 7.0902 14.1804 253.2897 Constraint 9 650 5.4883 6.8603 13.7206 245.8327 Constraint 380 443 6.3237 7.9046 15.8091 244.3088 Constraint 84 552 5.7596 7.1995 14.3989 242.4626 Constraint 526 595 5.9391 7.4238 14.8477 240.6085 Constraint 3 633 5.2820 6.6026 13.2051 230.9571 Constraint 200 380 5.3399 6.6749 13.3498 228.3968 Constraint 182 456 5.3047 6.6309 13.2618 228.1659 Constraint 58 134 5.9721 7.4651 14.9303 226.1822 Constraint 106 283 5.6840 7.1050 14.2101 225.5420 Constraint 17 650 4.8955 6.1194 12.2389 222.0983 Constraint 92 581 5.4119 6.7648 13.5297 220.2215 Constraint 207 642 5.7053 7.1316 14.2631 219.2464 Constraint 134 380 6.1792 7.7240 15.4481 217.0102 Constraint 200 472 5.9025 7.3781 14.7563 214.0523 Constraint 92 559 4.5075 5.6343 11.2687 209.2454 Constraint 75 305 5.2343 6.5429 13.0859 208.0060 Constraint 207 497 4.1451 5.1814 10.3628 207.9513 Constraint 3 642 5.5364 6.9205 13.8410 202.6450 Constraint 200 456 5.8995 7.3743 14.7486 198.8020 Constraint 182 443 5.4508 6.8135 13.6270 192.3376 Constraint 435 526 6.3161 7.8952 15.7903 191.5638 Constraint 213 526 5.7058 7.1322 14.2644 191.2066 Constraint 207 472 3.2446 4.0557 8.1114 185.9857 Constraint 114 534 5.3192 6.6490 13.2980 185.2371 Constraint 435 603 6.2588 7.8234 15.6469 180.1892 Constraint 92 552 5.4429 6.8036 13.6072 179.1479 Constraint 168 481 4.9376 6.1721 12.3441 176.8488 Constraint 17 642 5.2711 6.5888 13.1777 175.7116 Constraint 66 342 5.9495 7.4369 14.8737 172.5574 Constraint 305 595 5.8806 7.3508 14.7016 172.4070 Constraint 75 588 6.1300 7.6625 15.3249 172.1480 Constraint 213 399 6.2399 7.7998 15.5997 166.4225 Constraint 44 363 6.1214 7.6517 15.3034 165.6614 Constraint 207 625 6.1288 7.6610 15.3219 162.8089 Constraint 58 291 5.9327 7.4158 14.8317 162.6074 Constraint 168 443 4.9879 6.2348 12.4697 162.1242 Constraint 75 323 5.3547 6.6933 13.3867 156.3318 Constraint 114 526 5.3101 6.6377 13.2753 155.4562 Constraint 418 552 5.7047 7.1309 14.2618 154.3554 Constraint 66 335 5.8022 7.2528 14.5055 149.6861 Constraint 24 642 4.9509 6.1886 12.3771 148.9915 Constraint 335 595 5.8098 7.2622 14.5244 146.7189 Constraint 122 264 6.2326 7.7908 15.5816 146.4835 Constraint 35 335 5.1971 6.4963 12.9927 146.4191 Constraint 3 650 4.7743 5.9678 11.9357 144.0234 Constraint 435 595 6.0146 7.5183 15.0366 143.5080 Constraint 51 305 5.9180 7.3975 14.7950 143.2346 Constraint 24 650 5.1319 6.4148 12.8297 142.5672 Constraint 122 595 5.5812 6.9765 13.9530 141.5199 Constraint 92 572 4.5712 5.7140 11.4280 140.8815 Constraint 134 298 5.9163 7.3954 14.7908 139.6644 Constraint 194 472 5.5782 6.9727 13.9455 139.5496 Constraint 371 671 5.5126 6.8908 13.7815 139.3114 Constraint 213 465 5.7698 7.2122 14.4244 137.9619 Constraint 58 613 4.9993 6.2491 12.4981 135.6141 Constraint 122 342 6.1200 7.6500 15.3000 134.0975 Constraint 44 581 6.0995 7.6244 15.2487 133.0671 Constraint 66 559 5.6565 7.0706 14.1412 128.9890 Constraint 134 595 6.2513 7.8141 15.6282 128.9208 Constraint 194 456 5.3008 6.6260 13.2519 127.3728 Constraint 142 354 5.6914 7.1143 14.2286 126.9294 Constraint 97 534 5.3203 6.6504 13.3007 121.6993 Constraint 335 633 5.7748 7.2185 14.4370 121.6329 Constraint 3 625 5.6664 7.0830 14.1659 120.0173 Constraint 257 323 5.0878 6.3597 12.7194 117.2874 Constraint 44 633 4.9101 6.1376 12.2752 113.8934 Constraint 173 371 5.4747 6.8433 13.6867 113.2344 Constraint 75 342 5.9538 7.4422 14.8845 112.8572 Constraint 418 497 3.9906 4.9883 9.9766 112.6429 Constraint 75 595 5.0734 6.3417 12.6835 110.8620 Constraint 35 363 6.1713 7.7141 15.4283 110.4121 Constraint 418 526 4.3224 5.4030 10.8061 110.1543 Constraint 142 504 5.4119 6.7649 13.5297 109.8740 Constraint 418 543 6.3418 7.9273 15.8546 108.3291 Constraint 9 659 5.1819 6.4774 12.9548 108.2356 Constraint 429 497 6.1461 7.6827 15.3653 107.7919 Constraint 148 435 5.2964 6.6205 13.2410 106.1268 Constraint 168 241 4.7515 5.9394 11.8789 104.8789 Constraint 194 388 5.3762 6.7203 13.4405 103.3578 Constraint 122 399 6.1333 7.6666 15.3332 102.7965 Constraint 168 371 4.2843 5.3553 10.7107 101.3142 Constraint 429 603 6.3345 7.9182 15.8363 99.9409 Constraint 371 650 5.0286 6.2857 12.5714 99.6997 Constraint 97 264 5.8129 7.2661 14.5323 99.3266 Constraint 380 456 6.2018 7.7522 15.5044 98.6624 Constraint 399 543 6.2563 7.8204 15.6408 98.5132 Constraint 9 613 5.3182 6.6477 13.2954 96.7878 Constraint 349 659 5.9988 7.4985 14.9969 95.8603 Constraint 207 671 5.7584 7.1980 14.3961 95.6284 Constraint 92 291 5.6198 7.0248 14.0496 95.5906 Constraint 168 380 5.9476 7.4345 14.8690 94.7912 Constraint 58 603 5.7182 7.1478 14.2956 93.8722 Constraint 97 283 3.8172 4.7715 9.5430 93.0809 Constraint 17 613 5.3222 6.6527 13.3055 91.5914 Constraint 122 534 5.7689 7.2112 14.4223 91.3868 Constraint 168 363 5.5401 6.9251 13.8501 90.5422 Constraint 75 526 6.1125 7.6406 15.2812 87.5619 Constraint 264 342 6.0724 7.5905 15.1810 87.2877 Constraint 106 559 5.3670 6.7088 13.4176 86.7000 Constraint 168 435 4.8513 6.0641 12.1283 84.6391 Constraint 97 552 5.7781 7.2227 14.4454 82.2731 Constraint 114 504 6.0504 7.5630 15.1259 81.7064 Constraint 173 443 4.8503 6.0628 12.1257 79.0525 Constraint 194 435 4.8191 6.0239 12.0479 78.9988 Constraint 122 559 4.5790 5.7237 11.4475 78.9583 Constraint 84 315 6.0892 7.6115 15.2231 78.1671 Constraint 194 465 5.2504 6.5630 13.1261 77.6405 Constraint 388 633 5.0406 6.3008 12.6016 76.7161 Constraint 200 625 5.9493 7.4367 14.8734 75.5700 Constraint 97 559 4.5112 5.6390 11.2780 74.9820 Constraint 221 671 5.7768 7.2210 14.4419 74.6970 Constraint 213 488 6.0823 7.6029 15.2057 73.0984 Constraint 182 371 5.7310 7.1637 14.3274 73.0205 Constraint 221 683 4.6429 5.8036 11.6072 72.9397 Constraint 388 642 4.6562 5.8203 11.6406 71.9713 Constraint 92 315 5.6899 7.1124 14.2248 71.8986 Constraint 75 335 5.1860 6.4825 12.9651 70.9473 Constraint 349 650 5.0352 6.2940 12.5879 68.9819 Constraint 168 488 6.2189 7.7736 15.5473 68.9474 Constraint 418 504 6.1554 7.6942 15.3884 68.7200 Constraint 51 315 6.2479 7.8099 15.6198 68.1487 Constraint 9 388 5.6935 7.1169 14.2339 68.0109 Constraint 75 315 6.0683 7.5854 15.1709 67.9887 Constraint 406 603 4.9022 6.1278 12.2555 67.6067 Constraint 221 633 6.0214 7.5268 15.0536 66.9898 Constraint 363 650 5.3608 6.7010 13.4020 64.8032 Constraint 399 613 4.9453 6.1817 12.3634 64.6781 Constraint 194 625 5.4464 6.8080 13.6159 64.1430 Constraint 241 683 5.8652 7.3315 14.6630 62.5159 Constraint 44 625 5.4715 6.8394 13.6789 62.3259 Constraint 9 603 4.9813 6.2267 12.4533 62.2715 Constraint 35 388 6.0768 7.5960 15.1919 61.9154 Constraint 418 509 6.0824 7.6029 15.2059 60.9207 Constraint 349 625 4.9687 6.2108 12.4217 60.6736 Constraint 168 354 6.2306 7.7883 15.5766 60.1808 Constraint 84 323 6.2253 7.7816 15.5633 59.6499 Constraint 66 291 4.5089 5.6361 11.2723 58.3175 Constraint 17 659 4.6632 5.8290 11.6581 58.0190 Constraint 58 406 5.4130 6.7662 13.5324 57.5905 Constraint 435 504 6.1554 7.6942 15.3884 57.3444 Constraint 354 633 5.8071 7.2589 14.5179 57.0867 Constraint 134 354 4.9802 6.2252 12.4505 56.6786 Constraint 122 406 5.9310 7.4137 14.8274 55.9253 Constraint 380 633 5.3432 6.6790 13.3579 55.4675 Constraint 24 659 5.0066 6.2583 12.5166 54.9055 Constraint 354 650 5.9514 7.4393 14.8785 54.7353 Constraint 349 671 5.8843 7.3553 14.7107 54.5743 Constraint 148 399 6.2204 7.7755 15.5510 54.5081 Constraint 354 659 5.1756 6.4696 12.9391 53.7328 Constraint 17 603 5.6748 7.0935 14.1871 52.6110 Constraint 371 683 5.6197 7.0246 14.0492 51.1823 Constraint 58 399 5.8223 7.2779 14.5558 49.3615 Constraint 168 497 5.5847 6.9809 13.9618 47.6054 Constraint 194 497 5.5498 6.9372 13.8744 47.5267 Constraint 134 349 6.1987 7.7483 15.4966 46.8712 Constraint 114 275 4.7696 5.9621 11.9241 46.8712 Constraint 84 275 5.4285 6.7856 13.5711 46.8712 Constraint 44 399 6.2991 7.8738 15.7477 46.8712 Constraint 3 692 5.2623 6.5778 13.1557 46.6389 Constraint 24 671 5.4698 6.8373 13.6745 45.9272 Constraint 354 613 6.0353 7.5442 15.0883 45.0909 Constraint 9 671 5.2317 6.5396 13.0792 44.4024 Constraint 17 671 5.3459 6.6824 13.3649 43.3931 Constraint 92 283 4.4100 5.5125 11.0251 43.3153 Constraint 241 472 6.3095 7.8869 15.7739 43.2331 Constraint 106 504 5.9411 7.4263 14.8527 43.1615 Constraint 200 671 5.5144 6.8930 13.7860 43.0634 Constraint 207 633 5.7707 7.2133 14.4266 42.8307 Constraint 44 315 6.1447 7.6809 15.3617 41.4853 Constraint 3 659 4.7294 5.9117 11.8235 40.9444 Constraint 399 625 6.0761 7.5951 15.1903 39.6332 Constraint 3 613 5.3268 6.6585 13.3170 39.4599 Constraint 354 683 5.5425 6.9282 13.8564 39.1670 Constraint 92 264 5.2874 6.6093 13.2186 39.1229 Constraint 75 406 5.1586 6.4482 12.8964 39.1229 Constraint 66 310 5.7463 7.1829 14.3657 39.1229 Constraint 51 406 5.6147 7.0183 14.0366 39.1229 Constraint 75 534 5.9636 7.4545 14.9090 38.8124 Constraint 363 659 5.6810 7.1013 14.2026 38.7137 Constraint 17 335 5.3059 6.6324 13.2648 37.2501 Constraint 173 497 5.5637 6.9546 13.9092 36.7333 Constraint 173 456 4.7656 5.9570 11.9140 36.7333 Constraint 58 552 6.2152 7.7690 15.5381 34.9737 Constraint 388 683 5.9591 7.4489 14.8979 34.9388 Constraint 9 371 5.1584 6.4480 12.8960 34.8247 Constraint 51 298 4.7434 5.9292 11.8585 34.0236 Constraint 168 642 5.3049 6.6312 13.2624 33.8724 Constraint 35 642 5.5626 6.9532 13.9064 33.8017 Constraint 97 543 5.9636 7.4545 14.9090 32.4156 Constraint 194 380 5.5061 6.8826 13.7652 31.4722 Constraint 380 642 4.9343 6.1679 12.3358 31.2082 Constraint 24 692 6.0497 7.5622 15.1243 30.8274 Constraint 200 429 5.2583 6.5728 13.1456 30.6234 Constraint 200 642 5.8492 7.3115 14.6230 30.6212 Constraint 363 683 5.9298 7.4123 14.8245 30.5867 Constraint 207 429 6.1082 7.6352 15.2704 29.9159 Constraint 342 633 5.5977 6.9972 13.9943 29.8750 Constraint 443 683 4.8619 6.0774 12.1549 29.3949 Constraint 51 122 4.9536 6.1919 12.3839 29.0411 Constraint 388 671 5.9770 7.4712 14.9425 28.9845 Constraint 418 488 6.1051 7.6314 15.2628 28.9307 Constraint 3 349 6.2335 7.7919 15.5838 28.7882 Constraint 371 659 5.7087 7.1358 14.2717 28.2361 Constraint 194 642 5.4542 6.8178 13.6355 28.1033 Constraint 168 504 5.8471 7.3089 14.6177 28.0124 Constraint 221 613 6.1738 7.7173 15.4346 27.5430 Constraint 122 588 4.7129 5.8911 11.7822 27.0550 Constraint 35 349 5.8129 7.2661 14.5322 26.9137 Constraint 168 625 5.2110 6.5138 13.0275 26.5809 Constraint 233 633 6.0931 7.6164 15.2329 26.5463 Constraint 221 456 5.4874 6.8593 13.7185 26.1401 Constraint 241 349 5.2029 6.5036 13.0072 25.9250 Constraint 399 504 4.4465 5.5581 11.1161 25.6206 Constraint 84 526 6.0262 7.5327 15.0654 24.9275 Constraint 51 363 6.2111 7.7639 15.5277 24.5915 Constraint 233 642 5.9375 7.4219 14.8438 24.1713 Constraint 399 488 5.4453 6.8066 13.6132 24.0161 Constraint 200 633 6.1555 7.6943 15.3887 23.8231 Constraint 173 435 4.7209 5.9011 11.8022 23.7633 Constraint 66 134 5.6021 7.0026 14.0052 23.6291 Constraint 114 305 3.9850 4.9813 9.9626 23.4240 Constraint 106 543 5.3183 6.6479 13.2958 23.1540 Constraint 92 543 5.6663 7.0828 14.1656 23.1540 Constraint 335 642 5.5912 6.9890 13.9781 22.6487 Constraint 221 625 6.0835 7.6044 15.2088 22.1872 Constraint 388 692 5.8360 7.2950 14.5900 21.9864 Constraint 221 650 5.2138 6.5173 13.0345 21.4632 Constraint 342 642 5.2067 6.5084 13.0167 21.3467 Constraint 3 671 4.7373 5.9216 11.8432 21.2403 Constraint 9 683 4.7681 5.9601 11.9202 20.9436 Constraint 44 642 5.7917 7.2396 14.4792 20.3100 Constraint 182 388 5.5932 6.9915 13.9830 20.3040 Constraint 342 603 6.2324 7.7905 15.5811 20.2736 Constraint 194 671 6.1991 7.7489 15.4978 20.0631 Constraint 388 650 4.5851 5.7314 11.4628 20.0274 Constraint 9 194 5.4648 6.8310 13.6619 19.8102 Constraint 399 509 5.3434 6.6793 13.3586 19.7021 Constraint 406 613 5.7664 7.2080 14.4160 19.6023 Constraint 264 354 4.3967 5.4959 10.9919 19.6020 Constraint 106 305 4.3860 5.4825 10.9650 19.2378 Constraint 354 625 5.8241 7.2801 14.5603 18.7424 Constraint 92 534 4.8700 6.0874 12.1749 18.5232 Constraint 84 543 5.5345 6.9181 13.8362 18.5232 Constraint 221 472 5.1716 6.4645 12.9290 18.5063 Constraint 84 406 5.1762 6.4702 12.9405 18.4676 Constraint 75 310 5.7621 7.2026 14.4053 18.4676 Constraint 66 406 5.1625 6.4531 12.9061 18.4676 Constraint 380 481 5.1486 6.4357 12.8714 18.1581 Constraint 241 642 6.2496 7.8120 15.6241 18.0642 Constraint 323 633 6.1531 7.6914 15.3828 17.8255 Constraint 35 342 4.7344 5.9180 11.8360 17.7732 Constraint 35 323 4.9157 6.1446 12.2892 17.7732 Constraint 399 481 5.1829 6.4786 12.9572 17.7207 Constraint 213 481 4.1042 5.1302 10.2604 17.7207 Constraint 257 335 4.4141 5.5176 11.0352 17.6771 Constraint 142 221 4.2959 5.3699 10.7397 17.4202 Constraint 142 213 5.9463 7.4328 14.8656 17.4202 Constraint 134 221 5.1888 6.4860 12.9720 17.4202 Constraint 134 213 4.3699 5.4624 10.9247 17.4202 Constraint 122 257 4.4833 5.6041 11.2082 17.4202 Constraint 122 233 4.2812 5.3516 10.7031 17.4202 Constraint 114 310 5.0282 6.2852 12.5704 17.4202 Constraint 114 257 5.1208 6.4010 12.8019 17.4202 Constraint 194 488 6.3433 7.9291 15.8582 16.9961 Constraint 194 481 6.3239 7.9049 15.8097 16.9961 Constraint 17 692 5.4147 6.7684 13.5368 16.5972 Constraint 248 349 5.1198 6.3997 12.7994 16.2360 Constraint 114 559 5.5998 6.9997 13.9994 16.1188 Constraint 17 683 5.1826 6.4783 12.9566 15.8508 Constraint 406 504 4.9468 6.1835 12.3670 15.8472 Constraint 595 692 4.7098 5.8873 11.7745 15.5588 Constraint 148 207 5.0658 6.3322 12.6644 15.5475 Constraint 233 335 4.9596 6.1996 12.3991 15.1930 Constraint 518 588 5.2633 6.5791 13.1582 14.7991 Constraint 106 581 5.0568 6.3210 12.6420 14.7452 Constraint 335 650 3.7974 4.7467 9.4934 14.3124 Constraint 66 552 5.5783 6.9729 13.9458 14.0565 Constraint 298 625 4.4183 5.5228 11.0456 13.9400 Constraint 134 335 4.4683 5.5854 11.1708 13.8096 Constraint 97 526 5.1891 6.4863 12.9726 13.6801 Constraint 84 534 4.9434 6.1793 12.3585 13.6436 Constraint 142 472 5.5203 6.9003 13.8007 13.5106 Constraint 134 504 5.3819 6.7274 13.4548 13.5106 Constraint 134 497 4.9299 6.1624 12.3248 13.5106 Constraint 134 472 4.4811 5.6014 11.2028 13.5106 Constraint 24 363 6.2692 7.8365 15.6731 13.2179 Constraint 17 388 5.9687 7.4609 14.9218 13.2179 Constraint 588 683 5.2232 6.5290 13.0581 13.0082 Constraint 35 581 6.0986 7.6232 15.2465 12.9964 Constraint 233 625 6.1759 7.7199 15.4398 12.9585 Constraint 342 692 5.5745 6.9681 13.9362 12.9490 Constraint 497 581 6.3869 7.9836 15.9673 12.9207 Constraint 44 572 5.2000 6.5000 13.0000 12.6852 Constraint 9 335 5.3846 6.7308 13.4616 12.4990 Constraint 241 671 5.4316 6.7895 13.5790 12.2643 Constraint 264 349 4.7280 5.9101 11.8201 12.1731 Constraint 241 380 5.5964 6.9955 13.9910 12.1731 Constraint 241 363 3.4208 4.2759 8.5519 12.1731 Constraint 241 342 4.9067 6.1334 12.2667 12.1731 Constraint 241 310 6.1039 7.6298 15.2597 12.1731 Constraint 221 497 4.4327 5.5409 11.0818 12.1731 Constraint 221 435 5.6298 7.0372 14.0745 12.1731 Constraint 200 650 6.0306 7.5382 15.0764 12.1095 Constraint 354 671 5.1474 6.4343 12.8685 12.0331 Constraint 399 559 6.2551 7.8189 15.6377 12.0265 Constraint 233 683 6.3751 7.9689 15.9377 11.9996 Constraint 44 122 5.3914 6.7393 13.4786 11.9818 Constraint 51 552 6.1428 7.6785 15.3570 11.8369 Constraint 24 92 6.1939 7.7423 15.4847 11.5770 Constraint 51 625 6.2538 7.8172 15.6344 11.3854 Constraint 595 683 5.3616 6.7020 13.4040 11.3096 Constraint 342 625 5.4023 6.7529 13.5057 11.0229 Constraint 305 613 5.3622 6.7028 13.4055 10.8500 Constraint 363 671 5.6348 7.0435 14.0871 10.8166 Constraint 323 625 5.5891 6.9864 13.9729 10.7714 Constraint 399 633 6.1351 7.6689 15.3379 10.7295 Constraint 66 534 5.8541 7.3176 14.6352 10.7046 Constraint 51 481 5.4337 6.7921 13.5843 10.6378 Constraint 207 613 6.0050 7.5062 15.0125 10.5087 Constraint 443 692 4.8384 6.0480 12.0960 10.4982 Constraint 298 613 4.4295 5.5369 11.0737 10.3955 Constraint 335 603 5.3679 6.7098 13.4197 10.1714 Constraint 509 581 5.8634 7.3293 14.6586 10.1713 Constraint 58 182 5.1816 6.4770 12.9541 10.1520 Constraint 9 692 5.4339 6.7923 13.5847 10.0708 Constraint 298 642 4.2665 5.3331 10.6663 10.0162 Constraint 298 633 4.8037 6.0046 12.0093 10.0162 Constraint 114 283 6.0907 7.6133 15.2266 10.0126 Constraint 84 588 3.8243 4.7804 9.5607 9.9907 Constraint 207 650 5.9332 7.4165 14.8330 9.8550 Constraint 380 518 5.6857 7.1071 14.2142 9.8221 Constraint 182 625 4.8154 6.0193 12.0386 9.7199 Constraint 399 472 5.9544 7.4430 14.8860 9.6666 Constraint 17 342 5.8657 7.3322 14.6643 9.4498 Constraint 122 380 6.3256 7.9070 15.8140 9.2616 Constraint 114 315 6.2050 7.7563 15.5125 9.2616 Constraint 106 595 5.6722 7.0903 14.1805 9.2616 Constraint 97 504 6.0203 7.5254 15.0507 9.2616 Constraint 58 534 5.6299 7.0374 14.0747 9.2616 Constraint 51 534 5.4109 6.7636 13.5273 9.2616 Constraint 371 692 5.0478 6.3098 12.6195 9.0744 Constraint 363 692 3.8821 4.8526 9.7052 9.0744 Constraint 24 683 4.4806 5.6008 11.2016 9.0744 Constraint 3 168 5.6665 7.0832 14.1663 9.0242 Constraint 24 335 5.4798 6.8498 13.6996 8.9688 Constraint 114 581 4.7298 5.9122 11.8244 8.9157 Constraint 603 692 4.9747 6.2184 12.4367 8.8088 Constraint 323 603 4.7994 5.9993 11.9986 8.7705 Constraint 518 595 6.0489 7.5612 15.1224 8.6701 Constraint 122 335 6.2466 7.8082 15.6164 8.5733 Constraint 194 429 6.2824 7.8530 15.7059 8.4931 Constraint 3 683 4.4851 5.6064 11.2127 8.4289 Constraint 66 603 4.6030 5.7537 11.5075 8.3256 Constraint 51 472 5.2405 6.5506 13.1012 8.3224 Constraint 497 633 5.3278 6.6597 13.3194 8.3175 Constraint 194 650 4.9204 6.1505 12.3010 8.2931 Constraint 388 572 5.9343 7.4178 14.8357 8.1590 Constraint 122 248 5.3246 6.6557 13.3115 8.1586 Constraint 122 241 6.2477 7.8096 15.6191 8.1586 Constraint 44 298 5.5562 6.9452 13.8905 8.1255 Constraint 24 194 5.2188 6.5236 13.0471 7.9241 Constraint 323 613 4.4785 5.5981 11.1963 7.8935 Constraint 588 671 5.8151 7.2688 14.5376 7.4459 Constraint 509 603 5.8485 7.3106 14.6213 7.3833 Constraint 509 595 3.9666 4.9582 9.9165 7.3833 Constraint 497 613 4.4554 5.5692 11.1385 7.3833 Constraint 388 534 4.8915 6.1144 12.2288 7.3833 Constraint 388 526 5.0289 6.2862 12.5724 7.3833 Constraint 371 543 5.5148 6.8935 13.7870 7.3833 Constraint 371 534 4.3046 5.3807 10.7615 7.3833 Constraint 363 543 4.3119 5.3899 10.7799 7.3833 Constraint 363 534 5.1975 6.4969 12.9938 7.3833 Constraint 44 114 4.7348 5.9185 11.8371 7.3828 Constraint 3 148 6.0359 7.5448 15.0897 7.1784 Constraint 122 603 5.9820 7.4775 14.9549 7.0403 Constraint 305 625 5.4222 6.7778 13.5556 7.0082 Constraint 526 603 6.2211 7.7763 15.5527 6.9462 Constraint 305 603 5.6752 7.0940 14.1880 6.9462 Constraint 35 481 5.0859 6.3573 12.7147 6.9462 Constraint 24 509 6.1646 7.7058 15.4116 6.9462 Constraint 24 481 5.0870 6.3588 12.7176 6.9462 Constraint 335 625 5.0229 6.2786 12.5572 6.8476 Constraint 257 363 6.2475 7.8094 15.6188 6.8221 Constraint 305 692 5.0704 6.3380 12.6759 6.7616 Constraint 429 671 6.1592 7.6990 15.3980 6.6278 Constraint 380 692 4.2638 5.3297 10.6594 6.6249 Constraint 233 692 5.9825 7.4781 14.9562 6.6249 Constraint 44 692 5.1297 6.4121 12.8243 6.6249 Constraint 35 122 5.6191 7.0239 14.0479 6.6189 Constraint 233 456 6.3673 7.9591 15.9182 6.3348 Constraint 213 683 6.2751 7.8438 15.6877 6.2651 Constraint 168 349 6.3610 7.9512 15.9024 6.2651 Constraint 221 659 5.1847 6.4809 12.9619 6.2231 Constraint 342 526 5.6789 7.0986 14.1973 5.9749 Constraint 35 134 4.6291 5.7864 11.5729 5.8334 Constraint 581 692 4.8028 6.0036 12.0071 5.8300 Constraint 241 692 5.9439 7.4298 14.8597 5.8180 Constraint 241 650 6.0113 7.5141 15.0282 5.8180 Constraint 233 650 6.3730 7.9663 15.9326 5.8180 Constraint 106 497 4.2202 5.2753 10.5505 5.7631 Constraint 106 488 5.5078 6.8848 13.7695 5.7631 Constraint 106 481 6.3643 7.9554 15.9108 5.7631 Constraint 106 472 3.3195 4.1494 8.2988 5.7631 Constraint 106 465 3.8775 4.8469 9.6938 5.7631 Constraint 106 456 3.8800 4.8499 9.6999 5.7631 Constraint 106 435 5.8601 7.3251 14.6503 5.7631 Constraint 106 213 3.8179 4.7724 9.5448 5.7631 Constraint 97 497 6.3401 7.9251 15.8502 5.7631 Constraint 97 472 5.0838 6.3548 12.7096 5.7631 Constraint 97 221 3.8109 4.7637 9.5273 5.7631 Constraint 97 213 3.9210 4.9012 9.8024 5.7631 Constraint 92 472 6.0302 7.5378 15.0755 5.7631 Constraint 92 241 3.8603 4.8254 9.6508 5.7631 Constraint 92 221 4.3049 5.3812 10.7623 5.7631 Constraint 92 213 6.1246 7.6557 15.3114 5.7631 Constraint 84 504 5.5878 6.9847 13.9695 5.7631 Constraint 84 497 4.9438 6.1797 12.3594 5.7631 Constraint 84 472 5.7624 7.2030 14.4061 5.7631 Constraint 84 380 5.5780 6.9725 13.9451 5.7631 Constraint 84 241 5.3921 6.7401 13.4803 5.7631 Constraint 84 233 5.1358 6.4198 12.8395 5.7631 Constraint 84 221 5.3987 6.7484 13.4968 5.7631 Constraint 84 213 4.4898 5.6122 11.2245 5.7631 Constraint 75 257 6.2854 7.8567 15.7134 5.7631 Constraint 75 248 3.1233 3.9041 7.8082 5.7631 Constraint 75 241 3.5265 4.4081 8.8161 5.7631 Constraint 75 233 5.5877 6.9846 13.9692 5.7631 Constraint 66 264 6.1677 7.7096 15.4192 5.7631 Constraint 66 257 4.8010 6.0013 12.0025 5.7631 Constraint 66 248 5.5189 6.8987 13.7974 5.7631 Constraint 66 233 4.3139 5.3924 10.7849 5.7631 Constraint 58 310 4.2743 5.3428 10.6857 5.7631 Constraint 58 283 6.1382 7.6728 15.3456 5.7631 Constraint 58 264 3.6480 4.5601 9.1201 5.7631 Constraint 58 257 5.0444 6.3055 12.6111 5.7631 Constraint 51 526 5.7428 7.1785 14.3571 5.7631 Constraint 51 291 5.2645 6.5806 13.1613 5.7631 Constraint 44 291 4.8137 6.0171 12.0342 5.7631 Constraint 44 264 5.8002 7.2503 14.5006 5.7631 Constraint 51 134 5.0771 6.3464 12.6927 5.7598 Constraint 17 84 5.6904 7.1130 14.2260 5.7123 Constraint 388 659 5.8561 7.3202 14.6403 5.6142 Constraint 399 465 4.3711 5.4639 10.9279 5.6126 Constraint 51 465 4.2178 5.2722 10.5444 5.5537 Constraint 509 613 4.5179 5.6474 11.2948 5.5375 Constraint 509 588 5.4415 6.8019 13.6038 5.5375 Constraint 504 603 4.4676 5.5845 11.1691 5.5375 Constraint 504 595 6.2069 7.7586 15.5172 5.5375 Constraint 504 588 4.5993 5.7491 11.4983 5.5375 Constraint 497 625 6.1173 7.6466 15.2933 5.5375 Constraint 497 603 5.3379 6.6724 13.3448 5.5375 Constraint 488 603 4.5845 5.7306 11.4612 5.5375 Constraint 406 497 5.0553 6.3191 12.6383 5.5375 Constraint 406 472 5.5143 6.8929 13.7857 5.5375 Constraint 388 518 4.1856 5.2320 10.4639 5.5375 Constraint 380 509 4.5649 5.7062 11.4123 5.5375 Constraint 371 526 4.7958 5.9947 11.9895 5.5375 Constraint 363 526 3.4674 4.3342 8.6685 5.5375 Constraint 349 543 5.4748 6.8435 13.6869 5.5375 Constraint 342 509 5.6381 7.0477 14.0953 5.5375 Constraint 323 509 6.1133 7.6416 15.2831 5.5375 Constraint 315 625 6.2574 7.8218 15.6435 5.5375 Constraint 233 526 6.1355 7.6693 15.3386 5.5375 Constraint 122 221 6.0748 7.5936 15.1871 5.5375 Constraint 97 182 5.2175 6.5219 13.0437 5.5375 Constraint 588 692 5.0390 6.2987 12.5975 5.4952 Constraint 58 221 4.4700 5.5875 11.1750 5.4639 Constraint 58 213 4.7892 5.9866 11.9731 5.4639 Constraint 51 642 5.0770 6.3462 12.6924 5.4518 Constraint 35 659 4.9013 6.1267 12.2534 5.4518 Constraint 35 650 6.1693 7.7116 15.4232 5.4518 Constraint 51 142 5.6557 7.0697 14.1393 5.4317 Constraint 371 603 4.5609 5.7011 11.4022 5.4229 Constraint 173 488 6.2012 7.7515 15.5029 5.3210 Constraint 213 518 5.7657 7.2072 14.4143 5.2210 Constraint 44 134 4.7982 5.9978 11.9955 5.2163 Constraint 406 488 5.5980 6.9975 13.9949 5.1752 Constraint 380 465 6.1722 7.7152 15.4304 5.1752 Constraint 572 683 4.5538 5.6923 11.3845 5.1657 Constraint 66 399 6.3521 7.9401 15.8803 5.1466 Constraint 35 142 3.9011 4.8763 9.7526 5.1427 Constraint 380 683 6.0904 7.6130 15.2260 5.1064 Constraint 44 683 6.1954 7.7442 15.4885 5.1064 Constraint 35 683 4.1502 5.1877 10.3754 5.1064 Constraint 84 148 4.0156 5.0196 10.0391 5.0789 Constraint 58 142 3.9549 4.9436 9.8873 5.0679 Constraint 572 692 5.6121 7.0151 14.0302 5.0163 Constraint 298 603 5.9220 7.4025 14.8050 4.9570 Constraint 323 692 3.6850 4.6063 9.2126 4.9519 Constraint 298 692 4.2752 5.3440 10.6879 4.8225 Constraint 75 603 4.3889 5.4862 10.9724 4.7249 Constraint 58 625 4.8132 6.0165 12.0329 4.7249 Constraint 148 298 4.4568 5.5709 11.1419 4.6865 Constraint 66 481 4.8119 6.0149 12.0298 4.6308 Constraint 17 509 6.1220 7.6525 15.3049 4.6308 Constraint 488 633 6.1059 7.6324 15.2648 4.6145 Constraint 168 633 6.0016 7.5020 15.0041 4.6145 Constraint 58 371 5.5379 6.9224 13.8447 4.6145 Constraint 58 207 4.0282 5.0352 10.0704 4.6145 Constraint 58 200 5.2895 6.6119 13.2238 4.6145 Constraint 51 443 5.7597 7.1996 14.3992 4.6145 Constraint 51 213 4.6139 5.7674 11.5348 4.6145 Constraint 51 173 5.8013 7.2517 14.5033 4.6145 Constraint 44 241 4.6406 5.8008 11.6015 4.6145 Constraint 44 221 4.0062 5.0077 10.0155 4.6145 Constraint 44 213 5.4749 6.8436 13.6872 4.6145 Constraint 342 671 4.8291 6.0363 12.0727 4.5673 Constraint 552 633 3.8063 4.7578 9.5156 4.4787 Constraint 526 633 5.4687 6.8359 13.6718 4.4787 Constraint 504 581 5.3790 6.7238 13.4475 4.4706 Constraint 581 683 5.6235 7.0293 14.0586 4.4462 Constraint 142 200 5.7405 7.1756 14.3511 4.3471 Constraint 241 371 6.2541 7.8177 15.6353 4.2490 Constraint 221 465 5.9949 7.4936 14.9872 4.2490 Constraint 148 581 5.0436 6.3046 12.6091 4.2490 Constraint 148 305 4.5611 5.7013 11.4027 4.2490 Constraint 148 291 6.0941 7.6176 15.2353 4.2490 Constraint 122 310 6.2527 7.8158 15.6317 4.2490 Constraint 35 305 6.0571 7.5714 15.1428 4.2490 Constraint 35 472 5.0284 6.2855 12.5710 4.1612 Constraint 291 625 5.9624 7.4530 14.9059 4.1559 Constraint 84 283 5.9373 7.4216 14.8432 4.0745 Constraint 24 595 5.6688 7.0860 14.1720 4.0276 Constraint 24 588 5.0872 6.3590 12.7180 4.0276 Constraint 233 595 6.3602 7.9502 15.9004 4.0011 Constraint 194 633 5.6190 7.0237 14.0474 3.9620 Constraint 182 633 6.3853 7.9816 15.9632 3.9620 Constraint 291 642 5.8826 7.3532 14.7064 3.9238 Constraint 342 659 5.3722 6.7152 13.4305 3.9114 Constraint 488 625 4.3487 5.4359 10.8718 3.6916 Constraint 488 613 5.6841 7.1051 14.2102 3.6916 Constraint 481 633 5.6386 7.0482 14.0964 3.6916 Constraint 481 625 5.5549 6.9437 13.8873 3.6916 Constraint 472 633 5.8805 7.3506 14.7012 3.6916 Constraint 168 650 6.3437 7.9296 15.8592 3.6916 Constraint 75 168 5.8249 7.2811 14.5623 3.6916 Constraint 66 173 6.3907 7.9884 15.9769 3.6916 Constraint 66 168 4.5058 5.6323 11.2646 3.6916 Constraint 58 194 3.8926 4.8658 9.7316 3.6916 Constraint 58 173 3.8659 4.8324 9.6648 3.6916 Constraint 58 168 5.8149 7.2686 14.5372 3.6916 Constraint 51 194 5.9871 7.4839 14.9677 3.6916 Constraint 51 182 5.4578 6.8222 13.6444 3.6916 Constraint 44 472 5.4507 6.8134 13.6268 3.6916 Constraint 44 200 5.1964 6.4955 12.9910 3.6916 Constraint 44 194 3.7403 4.6754 9.3508 3.6916 Constraint 44 182 5.6991 7.1238 14.2477 3.6916 Constraint 35 200 4.2966 5.3707 10.7415 3.6916 Constraint 35 194 5.9459 7.4324 14.8649 3.6916 Constraint 35 182 5.1879 6.4848 12.9697 3.6916 Constraint 9 200 6.3324 7.9155 15.8310 3.6916 Constraint 323 683 4.9495 6.1869 12.3739 3.6824 Constraint 35 148 5.7249 7.1562 14.3123 3.6237 Constraint 388 581 5.0150 6.2687 12.5374 3.5969 Constraint 24 148 5.9393 7.4241 14.8482 3.5969 Constraint 406 534 5.8749 7.3436 14.6872 3.5558 Constraint 406 509 5.0842 6.3552 12.7104 3.5444 Constraint 114 595 6.3157 7.8946 15.7892 3.5120 Constraint 17 349 6.2444 7.8055 15.6111 3.5091 Constraint 9 349 6.2061 7.7576 15.5152 3.5091 Constraint 534 642 4.3933 5.4916 10.9833 3.4497 Constraint 323 671 4.1155 5.1444 10.2887 3.3560 Constraint 182 481 5.4275 6.7843 13.5687 3.3466 Constraint 114 406 6.0661 7.5826 15.1653 3.3302 Constraint 335 683 5.4470 6.8088 13.6176 3.1247 Constraint 35 114 5.3407 6.6759 13.3518 3.0952 Constraint 443 518 4.5497 5.6871 11.3741 3.0940 Constraint 92 173 5.2684 6.5856 13.1711 3.0009 Constraint 380 581 4.9292 6.1614 12.3229 2.9787 Constraint 122 497 5.9924 7.4905 14.9811 2.9512 Constraint 182 692 4.4828 5.6035 11.2070 2.8822 Constraint 84 305 6.0446 7.5558 15.1115 2.8640 Constraint 552 625 5.6205 7.0256 14.0512 2.7801 Constraint 543 633 5.6878 7.1098 14.2196 2.7801 Constraint 543 625 5.2281 6.5352 13.0703 2.7801 Constraint 534 650 3.7594 4.6992 9.3984 2.7801 Constraint 534 633 4.1228 5.1535 10.3070 2.7801 Constraint 518 633 3.9763 4.9704 9.9407 2.7801 Constraint 504 659 5.8007 7.2509 14.5017 2.7801 Constraint 134 275 6.2677 7.8347 15.6693 2.5423 Constraint 17 371 5.4783 6.8479 13.6959 2.4785 Constraint 122 182 5.6949 7.1186 14.2371 2.4744 Constraint 399 650 6.3065 7.8832 15.7663 2.4495 Constraint 399 642 4.8621 6.0776 12.1551 2.4495 Constraint 380 671 6.1576 7.6971 15.3941 2.4495 Constraint 380 659 5.1169 6.3961 12.7921 2.4495 Constraint 380 650 5.7908 7.2384 14.4769 2.4495 Constraint 66 642 5.7758 7.2198 14.4396 2.4495 Constraint 51 659 5.1673 6.4592 12.9184 2.4495 Constraint 44 659 5.7171 7.1464 14.2927 2.4495 Constraint 44 650 3.7369 4.6711 9.3421 2.4495 Constraint 435 552 5.9430 7.4287 14.8574 2.4411 Constraint 182 497 5.5995 6.9994 13.9987 2.3763 Constraint 182 435 4.7617 5.9522 11.9043 2.3763 Constraint 380 472 6.2737 7.8421 15.6843 2.3624 Constraint 148 481 5.3947 6.7434 13.4867 2.3624 Constraint 122 504 5.2771 6.5964 13.1928 2.3624 Constraint 35 572 4.9032 6.1290 12.2580 2.3624 Constraint 134 315 6.1956 7.7445 15.4891 2.3506 Constraint 134 603 6.3017 7.8772 15.7543 2.3154 Constraint 114 168 6.1090 7.6362 15.2724 2.3154 Constraint 106 572 6.2404 7.8005 15.6009 2.3154 Constraint 35 465 3.7583 4.6979 9.3957 2.3154 Constraint 9 509 6.1270 7.6588 15.3176 2.3154 Constraint 9 481 5.0361 6.2952 12.5904 2.3154 Constraint 3 509 6.0016 7.5020 15.0040 2.3154 Constraint 3 481 4.9762 6.2203 12.4406 2.3154 Constraint 315 692 6.2415 7.8018 15.6037 2.3101 Constraint 173 642 4.7511 5.9389 11.8779 2.2997 Constraint 148 275 5.9181 7.3976 14.7953 2.2833 Constraint 24 142 6.2593 7.8242 15.6483 2.2833 Constraint 298 572 6.2863 7.8579 15.7157 2.2646 Constraint 399 683 6.1532 7.6914 15.3829 2.2422 Constraint 122 173 3.6749 4.5936 9.1873 2.2422 Constraint 429 625 6.2246 7.7807 15.5614 2.2093 Constraint 207 659 6.2236 7.7795 15.5590 2.2093 Constraint 363 603 6.1101 7.6376 15.2751 2.0927 Constraint 241 659 6.3866 7.9832 15.9664 2.0927 Constraint 534 613 6.3510 7.9388 15.8776 2.0780 Constraint 526 613 4.2311 5.2889 10.5778 2.0780 Constraint 291 650 6.1278 7.6597 15.3194 2.0780 Constraint 9 173 5.3223 6.6529 13.3058 2.0780 Constraint 9 168 4.9362 6.1702 12.3404 2.0780 Constraint 3 173 6.0237 7.5297 15.0593 2.0780 Constraint 35 106 3.7778 4.7223 9.4445 1.9820 Constraint 305 671 6.2193 7.7741 15.5482 1.9308 Constraint 363 443 6.2223 7.7779 15.5557 1.8976 Constraint 342 581 6.0204 7.5256 15.0511 1.8973 Constraint 534 603 5.0272 6.2841 12.5681 1.8458 Constraint 518 625 4.7059 5.8824 11.7648 1.8458 Constraint 518 613 5.7955 7.2443 14.4887 1.8458 Constraint 518 603 4.1033 5.1292 10.2583 1.8458 Constraint 504 642 5.7699 7.2124 14.4247 1.8458 Constraint 504 633 6.1463 7.6828 15.3657 1.8458 Constraint 504 625 3.9679 4.9598 9.9197 1.8458 Constraint 504 613 5.4104 6.7629 13.5259 1.8458 Constraint 481 613 5.8543 7.3179 14.6357 1.8458 Constraint 481 581 6.3869 7.9836 15.9673 1.8458 Constraint 472 613 6.0024 7.5030 15.0060 1.8458 Constraint 388 543 4.6806 5.8507 11.7015 1.8458 Constraint 380 534 4.6713 5.8391 11.6782 1.8458 Constraint 371 552 6.1602 7.7003 15.4005 1.8458 Constraint 363 552 3.9177 4.8971 9.7942 1.8458 Constraint 342 552 5.4080 6.7600 13.5199 1.8458 Constraint 335 534 5.7948 7.2435 14.4869 1.8458 Constraint 335 518 5.6837 7.1046 14.2092 1.8458 Constraint 323 518 6.0865 7.6082 15.2163 1.8458 Constraint 298 650 4.2778 5.3473 10.6946 1.8458 Constraint 233 534 6.2890 7.8612 15.7224 1.8458 Constraint 207 534 5.8467 7.3084 14.6168 1.8458 Constraint 182 534 4.9905 6.2381 12.4762 1.8458 Constraint 173 291 5.6131 7.0164 14.0327 1.8458 Constraint 173 264 6.3404 7.9255 15.8510 1.8458 Constraint 106 182 6.2587 7.8234 15.6468 1.8458 Constraint 106 173 6.3099 7.8873 15.7747 1.8458 Constraint 106 168 4.4992 5.6240 11.2479 1.8458 Constraint 66 148 4.0419 5.0524 10.1049 1.8458 Constraint 35 497 4.9517 6.1896 12.3792 1.8458 Constraint 35 380 6.1694 7.7117 15.4234 1.8458 Constraint 35 241 5.5996 6.9995 13.9990 1.8458 Constraint 35 233 5.3200 6.6501 13.3001 1.8458 Constraint 35 221 5.5837 6.9797 13.9593 1.8458 Constraint 35 213 4.0332 5.0415 10.0829 1.8458 Constraint 35 173 3.5941 4.4927 8.9853 1.8458 Constraint 35 168 5.2766 6.5958 13.1916 1.8458 Constraint 24 342 5.3674 6.7093 13.4185 1.8458 Constraint 24 305 3.6222 4.5277 9.0554 1.8458 Constraint 24 291 5.6134 7.0167 14.0335 1.8458 Constraint 24 264 5.3681 6.7101 13.4202 1.8458 Constraint 24 257 4.2407 5.3008 10.6017 1.8458 Constraint 24 248 5.2873 6.6092 13.2183 1.8458 Constraint 24 233 4.8956 6.1195 12.2390 1.8458 Constraint 17 310 5.4960 6.8700 13.7401 1.8458 Constraint 17 305 4.6297 5.7872 11.5743 1.8458 Constraint 17 298 4.9823 6.2279 12.4557 1.8458 Constraint 17 291 2.1680 2.7100 5.4200 1.8458 Constraint 17 283 6.2105 7.7631 15.5263 1.8458 Constraint 17 264 3.0430 3.8038 7.6076 1.8458 Constraint 17 257 5.8237 7.2797 14.5593 1.8458 Constraint 9 526 4.7941 5.9927 11.9854 1.8458 Constraint 9 305 3.6905 4.6131 9.2263 1.8458 Constraint 9 298 3.6639 4.5799 9.1597 1.8458 Constraint 9 291 4.9359 6.1699 12.3398 1.8458 Constraint 3 298 5.0906 6.3632 12.7264 1.8458 Constraint 3 291 5.5127 6.8909 13.7817 1.8458 Constraint 17 148 3.6705 4.5881 9.1762 1.8454 Constraint 559 633 5.6806 7.1007 14.2014 1.6986 Constraint 534 659 6.0534 7.5667 15.1334 1.6986 Constraint 388 588 5.1110 6.3888 12.7775 1.6651 Constraint 380 588 5.4648 6.8310 13.6620 1.6651 Constraint 371 595 5.0493 6.3116 12.6233 1.6651 Constraint 349 595 4.6613 5.8266 11.6531 1.6651 Constraint 335 581 5.5352 6.9190 13.8379 1.6651 Constraint 342 683 5.8842 7.3553 14.7106 1.6274 Constraint 44 142 4.7341 5.9176 11.8353 1.5982 Constraint 58 526 6.3587 7.9484 15.8969 1.5678 Constraint 3 142 3.5066 4.3833 8.7665 1.5446 Constraint 44 388 5.1554 6.4443 12.8886 1.5184 Constraint 456 534 5.3422 6.6777 13.3554 1.4619 Constraint 456 526 4.5613 5.7017 11.4033 1.4619 Constraint 17 363 5.8969 7.3711 14.7421 1.4569 Constraint 84 310 5.7215 7.1519 14.3037 1.4375 Constraint 84 264 5.4268 6.7835 13.5671 1.4354 Constraint 399 572 4.9830 6.2287 12.4575 1.3136 Constraint 380 572 4.8637 6.0796 12.1592 1.3136 Constraint 342 572 5.5026 6.8783 13.7565 1.3136 Constraint 305 572 6.1223 7.6529 15.3058 1.3136 Constraint 24 106 5.4745 6.8431 13.6862 1.3124 Constraint 3 134 4.9836 6.2295 12.4590 1.3124 Constraint 221 504 5.7047 7.1309 14.2618 1.3057 Constraint 443 625 5.6807 7.1008 14.2017 1.1072 Constraint 75 200 5.1117 6.3896 12.7791 1.0815 Constraint 9 84 5.5550 6.9437 13.8875 1.0815 Constraint 349 683 5.7077 7.1346 14.2692 0.9948 Constraint 148 456 4.5911 5.7388 11.4776 0.9401 Constraint 148 248 5.5575 6.9469 13.8938 0.9401 Constraint 497 642 6.2906 7.8633 15.7266 0.9229 Constraint 488 642 5.8380 7.2976 14.5951 0.9229 Constraint 207 543 5.5304 6.9130 13.8259 0.9229 Constraint 173 625 5.4261 6.7826 13.5652 0.9229 Constraint 97 642 5.6372 7.0466 14.0931 0.9229 Constraint 75 148 5.1291 6.4114 12.8229 0.9229 Constraint 75 142 4.3499 5.4374 10.8748 0.9229 Constraint 58 148 5.1969 6.4962 12.9923 0.9229 Constraint 51 456 3.9669 4.9586 9.9173 0.9229 Constraint 51 168 5.2852 6.6065 13.2130 0.9229 Constraint 51 148 3.1871 3.9839 7.9677 0.9229 Constraint 44 456 5.5401 6.9252 13.8504 0.9229 Constraint 44 173 5.8102 7.2628 14.5256 0.9229 Constraint 44 168 5.1281 6.4101 12.8203 0.9229 Constraint 134 200 6.0544 7.5680 15.1361 0.8749 Constraint 134 194 3.2181 4.0227 8.0453 0.8749 Constraint 75 472 4.2731 5.3413 10.6827 0.8493 Constraint 75 465 4.8064 6.0080 12.0160 0.8493 Constraint 75 221 6.0764 7.5955 15.1911 0.8493 Constraint 75 213 4.7284 5.9105 11.8210 0.8493 Constraint 75 207 5.6853 7.1066 14.2133 0.8493 Constraint 66 472 5.1887 6.4859 12.9717 0.8493 Constraint 66 221 4.5898 5.7372 11.4744 0.8493 Constraint 66 213 5.6958 7.1197 14.2394 0.8493 Constraint 58 472 5.1763 6.4704 12.9408 0.8493 Constraint 58 380 5.6970 7.1212 14.2424 0.8493 Constraint 58 233 3.1980 3.9975 7.9950 0.8493 Constraint 51 233 5.8528 7.3160 14.6320 0.8493 Constraint 9 75 5.5959 6.9949 13.9898 0.8493 Constraint 559 692 5.0603 6.3254 12.6509 0.8137 Constraint 552 692 4.3340 5.4175 10.8349 0.8137 Constraint 435 625 6.3451 7.9313 15.8626 0.7309 Constraint 435 613 6.0141 7.5176 15.0352 0.7309 Constraint 182 642 5.3236 6.6544 13.3089 0.7309 Constraint 581 671 4.5401 5.6751 11.3501 0.7194 Constraint 581 659 5.5759 6.9699 13.9397 0.7194 Constraint 572 671 5.5371 6.9213 13.8427 0.7194 Constraint 572 659 4.5201 5.6501 11.3002 0.7194 Constraint 559 683 5.3013 6.6267 13.2533 0.7194 Constraint 342 650 5.6359 7.0449 14.0898 0.7194 Constraint 323 650 4.1514 5.1893 10.3786 0.7194 Constraint 315 683 6.2380 7.7975 15.5949 0.7194 Constraint 315 671 6.1302 7.6627 15.3254 0.7194 Constraint 298 683 5.0577 6.3222 12.6444 0.7194 Constraint 298 671 4.0381 5.0476 10.0953 0.7194 Constraint 92 310 5.6797 7.0996 14.1992 0.7188 Constraint 92 305 5.7304 7.1631 14.3261 0.7037 Constraint 148 371 6.2382 7.7977 15.5955 0.6965 Constraint 148 257 6.2696 7.8371 15.6741 0.6965 Constraint 142 456 5.6383 7.0478 14.0957 0.6965 Constraint 134 488 6.2258 7.7822 15.5644 0.6965 Constraint 134 456 6.0812 7.6015 15.2030 0.6965 Constraint 44 148 5.8697 7.3371 14.6742 0.6965 Constraint 142 275 4.3042 5.3803 10.7605 0.6811 Constraint 543 692 5.7684 7.2105 14.4210 0.4873 Constraint 534 692 5.2690 6.5863 13.1726 0.4873 Constraint 323 572 6.0850 7.6063 15.2126 0.4643 Constraint 122 509 3.8760 4.8449 9.6899 0.4643 Constraint 122 488 6.2618 7.8272 15.6544 0.4643 Constraint 114 518 6.2649 7.8311 15.6622 0.4643 Constraint 114 509 5.6427 7.0534 14.1067 0.4643 Constraint 509 642 5.3863 6.7328 13.4657 0.4375 Constraint 388 488 6.0413 7.5517 15.1034 0.4375 Constraint 388 481 4.7312 5.9140 11.8280 0.4375 Constraint 388 472 5.3988 6.7485 13.4970 0.4375 Constraint 388 465 4.6269 5.7836 11.5673 0.4375 Constraint 380 504 4.8749 6.0936 12.1873 0.4375 Constraint 380 488 3.9803 4.9753 9.9507 0.4375 Constraint 371 497 4.9513 6.1892 12.3783 0.4375 Constraint 371 488 6.1497 7.6871 15.3742 0.4375 Constraint 371 481 5.8982 7.3727 14.7454 0.4375 Constraint 363 504 3.3778 4.2222 8.4444 0.4375 Constraint 363 497 4.9006 6.1258 12.2516 0.4375 Constraint 354 526 4.9985 6.2482 12.4963 0.4375 Constraint 354 518 5.0037 6.2546 12.5092 0.4375 Constraint 354 509 5.3333 6.6666 13.3333 0.4375 Constraint 354 504 4.2039 5.2548 10.5096 0.4375 Constraint 354 497 6.0583 7.5728 15.1456 0.4375 Constraint 349 504 5.1799 6.4749 12.9499 0.4375 Constraint 342 504 4.5252 5.6564 11.3129 0.4375 Constraint 168 257 5.2768 6.5960 13.1920 0.4375 Constraint 148 283 5.6446 7.0558 14.1115 0.4375 Constraint 142 283 4.6685 5.8356 11.6713 0.4375 Constraint 134 283 4.5017 5.6272 11.2543 0.4375 Constraint 106 429 4.5602 5.7002 11.4004 0.4375 Constraint 182 650 6.1912 7.7390 15.4781 0.3691 Constraint 241 613 5.4657 6.8321 13.6642 0.3635 Constraint 509 692 5.9196 7.3995 14.7990 0.3264 Constraint 122 481 6.1276 7.6596 15.3191 0.3264 Constraint 24 134 6.2159 7.7698 15.5397 0.3264 Constraint 24 114 6.0147 7.5184 15.0367 0.3264 Constraint 17 142 5.8132 7.2665 14.5331 0.3264 Constraint 17 134 3.9261 4.9076 9.8153 0.3264 Constraint 9 148 6.1001 7.6251 15.2503 0.3264 Constraint 9 142 4.5091 5.6364 11.2728 0.3264 Constraint 9 134 5.9561 7.4451 14.8902 0.3264 Constraint 122 275 5.7719 7.2148 14.4297 0.2436 Constraint 114 497 6.2549 7.8186 15.6372 0.2436 Constraint 114 488 5.4964 6.8705 13.7409 0.2436 Constraint 323 659 5.2953 6.6191 13.2382 0.2322 Constraint 323 588 5.1163 6.3954 12.7907 0.2322 Constraint 323 581 4.3622 5.4527 10.9055 0.2322 Constraint 315 613 5.8434 7.3042 14.6085 0.2322 Constraint 315 603 6.1457 7.6821 15.3642 0.2322 Constraint 315 595 5.9861 7.4827 14.9653 0.2322 Constraint 298 595 3.9324 4.9155 9.8309 0.2322 Constraint 291 671 6.1666 7.7083 15.4165 0.2322 Constraint 122 200 4.3116 5.3895 10.7791 0.2322 Constraint 122 194 4.8118 6.0148 12.0296 0.2322 Constraint 92 182 5.8269 7.2836 14.5671 0.2322 Constraint 84 182 3.4454 4.3067 8.6134 0.2322 Constraint 84 173 4.6279 5.7849 11.5699 0.2322 Constraint 75 182 6.3485 7.9357 15.8714 0.2322 Constraint 66 200 4.3525 5.4407 10.8813 0.2322 Constraint 17 173 5.0804 6.3505 12.7011 0.2322 Constraint 17 168 5.9007 7.3759 14.7518 0.2322 Constraint 17 106 3.6417 4.5522 9.1043 0.2322 Constraint 17 92 4.8764 6.0955 12.1909 0.2322 Constraint 9 106 5.1350 6.4187 12.8374 0.2322 Constraint 9 97 4.5627 5.7034 11.4068 0.2322 Constraint 9 92 5.0411 6.3014 12.6028 0.2322 Constraint 3 106 4.0518 5.0648 10.1296 0.2322 Constraint 3 97 5.6075 7.0094 14.0188 0.2322 Constraint 114 342 5.8404 7.3005 14.6009 0.1818 Constraint 683 692 0.8000 1.0000 2.0000 0.0000 Constraint 671 692 0.8000 1.0000 2.0000 0.0000 Constraint 671 683 0.8000 1.0000 2.0000 0.0000 Constraint 659 692 0.8000 1.0000 2.0000 0.0000 Constraint 659 683 0.8000 1.0000 2.0000 0.0000 Constraint 659 671 0.8000 1.0000 2.0000 0.0000 Constraint 650 692 0.8000 1.0000 2.0000 0.0000 Constraint 650 683 0.8000 1.0000 2.0000 0.0000 Constraint 650 671 0.8000 1.0000 2.0000 0.0000 Constraint 650 659 0.8000 1.0000 2.0000 0.0000 Constraint 642 692 0.8000 1.0000 2.0000 0.0000 Constraint 642 683 0.8000 1.0000 2.0000 0.0000 Constraint 642 671 0.8000 1.0000 2.0000 0.0000 Constraint 642 659 0.8000 1.0000 2.0000 0.0000 Constraint 642 650 0.8000 1.0000 2.0000 0.0000 Constraint 633 692 0.8000 1.0000 2.0000 0.0000 Constraint 633 683 0.8000 1.0000 2.0000 0.0000 Constraint 633 671 0.8000 1.0000 2.0000 0.0000 Constraint 633 659 0.8000 1.0000 2.0000 0.0000 Constraint 633 650 0.8000 1.0000 2.0000 0.0000 Constraint 633 642 0.8000 1.0000 2.0000 0.0000 Constraint 625 692 0.8000 1.0000 2.0000 0.0000 Constraint 625 683 0.8000 1.0000 2.0000 0.0000 Constraint 625 671 0.8000 1.0000 2.0000 0.0000 Constraint 625 659 0.8000 1.0000 2.0000 0.0000 Constraint 625 650 0.8000 1.0000 2.0000 0.0000 Constraint 625 642 0.8000 1.0000 2.0000 0.0000 Constraint 625 633 0.8000 1.0000 2.0000 0.0000 Constraint 613 692 0.8000 1.0000 2.0000 0.0000 Constraint 613 683 0.8000 1.0000 2.0000 0.0000 Constraint 613 671 0.8000 1.0000 2.0000 0.0000 Constraint 613 659 0.8000 1.0000 2.0000 0.0000 Constraint 613 650 0.8000 1.0000 2.0000 0.0000 Constraint 613 642 0.8000 1.0000 2.0000 0.0000 Constraint 613 633 0.8000 1.0000 2.0000 0.0000 Constraint 613 625 0.8000 1.0000 2.0000 0.0000 Constraint 603 683 0.8000 1.0000 2.0000 0.0000 Constraint 603 671 0.8000 1.0000 2.0000 0.0000 Constraint 603 659 0.8000 1.0000 2.0000 0.0000 Constraint 603 650 0.8000 1.0000 2.0000 0.0000 Constraint 603 642 0.8000 1.0000 2.0000 0.0000 Constraint 603 633 0.8000 1.0000 2.0000 0.0000 Constraint 603 625 0.8000 1.0000 2.0000 0.0000 Constraint 603 613 0.8000 1.0000 2.0000 0.0000 Constraint 595 671 0.8000 1.0000 2.0000 0.0000 Constraint 595 659 0.8000 1.0000 2.0000 0.0000 Constraint 595 650 0.8000 1.0000 2.0000 0.0000 Constraint 595 642 0.8000 1.0000 2.0000 0.0000 Constraint 595 633 0.8000 1.0000 2.0000 0.0000 Constraint 595 625 0.8000 1.0000 2.0000 0.0000 Constraint 595 613 0.8000 1.0000 2.0000 0.0000 Constraint 595 603 0.8000 1.0000 2.0000 0.0000 Constraint 588 659 0.8000 1.0000 2.0000 0.0000 Constraint 588 650 0.8000 1.0000 2.0000 0.0000 Constraint 588 642 0.8000 1.0000 2.0000 0.0000 Constraint 588 633 0.8000 1.0000 2.0000 0.0000 Constraint 588 625 0.8000 1.0000 2.0000 0.0000 Constraint 588 613 0.8000 1.0000 2.0000 0.0000 Constraint 588 603 0.8000 1.0000 2.0000 0.0000 Constraint 588 595 0.8000 1.0000 2.0000 0.0000 Constraint 581 650 0.8000 1.0000 2.0000 0.0000 Constraint 581 642 0.8000 1.0000 2.0000 0.0000 Constraint 581 633 0.8000 1.0000 2.0000 0.0000 Constraint 581 625 0.8000 1.0000 2.0000 0.0000 Constraint 581 613 0.8000 1.0000 2.0000 0.0000 Constraint 581 603 0.8000 1.0000 2.0000 0.0000 Constraint 581 595 0.8000 1.0000 2.0000 0.0000 Constraint 581 588 0.8000 1.0000 2.0000 0.0000 Constraint 572 650 0.8000 1.0000 2.0000 0.0000 Constraint 572 642 0.8000 1.0000 2.0000 0.0000 Constraint 572 633 0.8000 1.0000 2.0000 0.0000 Constraint 572 625 0.8000 1.0000 2.0000 0.0000 Constraint 572 613 0.8000 1.0000 2.0000 0.0000 Constraint 572 603 0.8000 1.0000 2.0000 0.0000 Constraint 572 595 0.8000 1.0000 2.0000 0.0000 Constraint 572 588 0.8000 1.0000 2.0000 0.0000 Constraint 572 581 0.8000 1.0000 2.0000 0.0000 Constraint 559 671 0.8000 1.0000 2.0000 0.0000 Constraint 559 659 0.8000 1.0000 2.0000 0.0000 Constraint 559 650 0.8000 1.0000 2.0000 0.0000 Constraint 559 642 0.8000 1.0000 2.0000 0.0000 Constraint 559 625 0.8000 1.0000 2.0000 0.0000 Constraint 559 613 0.8000 1.0000 2.0000 0.0000 Constraint 559 603 0.8000 1.0000 2.0000 0.0000 Constraint 559 595 0.8000 1.0000 2.0000 0.0000 Constraint 559 588 0.8000 1.0000 2.0000 0.0000 Constraint 559 581 0.8000 1.0000 2.0000 0.0000 Constraint 559 572 0.8000 1.0000 2.0000 0.0000 Constraint 552 683 0.8000 1.0000 2.0000 0.0000 Constraint 552 671 0.8000 1.0000 2.0000 0.0000 Constraint 552 659 0.8000 1.0000 2.0000 0.0000 Constraint 552 650 0.8000 1.0000 2.0000 0.0000 Constraint 552 642 0.8000 1.0000 2.0000 0.0000 Constraint 552 613 0.8000 1.0000 2.0000 0.0000 Constraint 552 603 0.8000 1.0000 2.0000 0.0000 Constraint 552 595 0.8000 1.0000 2.0000 0.0000 Constraint 552 588 0.8000 1.0000 2.0000 0.0000 Constraint 552 581 0.8000 1.0000 2.0000 0.0000 Constraint 552 572 0.8000 1.0000 2.0000 0.0000 Constraint 552 559 0.8000 1.0000 2.0000 0.0000 Constraint 543 683 0.8000 1.0000 2.0000 0.0000 Constraint 543 671 0.8000 1.0000 2.0000 0.0000 Constraint 543 659 0.8000 1.0000 2.0000 0.0000 Constraint 543 650 0.8000 1.0000 2.0000 0.0000 Constraint 543 642 0.8000 1.0000 2.0000 0.0000 Constraint 543 613 0.8000 1.0000 2.0000 0.0000 Constraint 543 603 0.8000 1.0000 2.0000 0.0000 Constraint 543 595 0.8000 1.0000 2.0000 0.0000 Constraint 543 588 0.8000 1.0000 2.0000 0.0000 Constraint 543 581 0.8000 1.0000 2.0000 0.0000 Constraint 543 572 0.8000 1.0000 2.0000 0.0000 Constraint 543 559 0.8000 1.0000 2.0000 0.0000 Constraint 543 552 0.8000 1.0000 2.0000 0.0000 Constraint 534 683 0.8000 1.0000 2.0000 0.0000 Constraint 534 671 0.8000 1.0000 2.0000 0.0000 Constraint 534 625 0.8000 1.0000 2.0000 0.0000 Constraint 534 595 0.8000 1.0000 2.0000 0.0000 Constraint 534 588 0.8000 1.0000 2.0000 0.0000 Constraint 534 581 0.8000 1.0000 2.0000 0.0000 Constraint 534 572 0.8000 1.0000 2.0000 0.0000 Constraint 534 559 0.8000 1.0000 2.0000 0.0000 Constraint 534 552 0.8000 1.0000 2.0000 0.0000 Constraint 534 543 0.8000 1.0000 2.0000 0.0000 Constraint 526 692 0.8000 1.0000 2.0000 0.0000 Constraint 526 683 0.8000 1.0000 2.0000 0.0000 Constraint 526 671 0.8000 1.0000 2.0000 0.0000 Constraint 526 659 0.8000 1.0000 2.0000 0.0000 Constraint 526 650 0.8000 1.0000 2.0000 0.0000 Constraint 526 642 0.8000 1.0000 2.0000 0.0000 Constraint 526 625 0.8000 1.0000 2.0000 0.0000 Constraint 526 588 0.8000 1.0000 2.0000 0.0000 Constraint 526 581 0.8000 1.0000 2.0000 0.0000 Constraint 526 572 0.8000 1.0000 2.0000 0.0000 Constraint 526 559 0.8000 1.0000 2.0000 0.0000 Constraint 526 552 0.8000 1.0000 2.0000 0.0000 Constraint 526 543 0.8000 1.0000 2.0000 0.0000 Constraint 526 534 0.8000 1.0000 2.0000 0.0000 Constraint 518 692 0.8000 1.0000 2.0000 0.0000 Constraint 518 683 0.8000 1.0000 2.0000 0.0000 Constraint 518 671 0.8000 1.0000 2.0000 0.0000 Constraint 518 659 0.8000 1.0000 2.0000 0.0000 Constraint 518 650 0.8000 1.0000 2.0000 0.0000 Constraint 518 642 0.8000 1.0000 2.0000 0.0000 Constraint 518 581 0.8000 1.0000 2.0000 0.0000 Constraint 518 572 0.8000 1.0000 2.0000 0.0000 Constraint 518 559 0.8000 1.0000 2.0000 0.0000 Constraint 518 552 0.8000 1.0000 2.0000 0.0000 Constraint 518 543 0.8000 1.0000 2.0000 0.0000 Constraint 518 534 0.8000 1.0000 2.0000 0.0000 Constraint 518 526 0.8000 1.0000 2.0000 0.0000 Constraint 509 683 0.8000 1.0000 2.0000 0.0000 Constraint 509 671 0.8000 1.0000 2.0000 0.0000 Constraint 509 659 0.8000 1.0000 2.0000 0.0000 Constraint 509 650 0.8000 1.0000 2.0000 0.0000 Constraint 509 633 0.8000 1.0000 2.0000 0.0000 Constraint 509 625 0.8000 1.0000 2.0000 0.0000 Constraint 509 572 0.8000 1.0000 2.0000 0.0000 Constraint 509 559 0.8000 1.0000 2.0000 0.0000 Constraint 509 552 0.8000 1.0000 2.0000 0.0000 Constraint 509 543 0.8000 1.0000 2.0000 0.0000 Constraint 509 534 0.8000 1.0000 2.0000 0.0000 Constraint 509 526 0.8000 1.0000 2.0000 0.0000 Constraint 509 518 0.8000 1.0000 2.0000 0.0000 Constraint 504 692 0.8000 1.0000 2.0000 0.0000 Constraint 504 683 0.8000 1.0000 2.0000 0.0000 Constraint 504 671 0.8000 1.0000 2.0000 0.0000 Constraint 504 650 0.8000 1.0000 2.0000 0.0000 Constraint 504 572 0.8000 1.0000 2.0000 0.0000 Constraint 504 559 0.8000 1.0000 2.0000 0.0000 Constraint 504 552 0.8000 1.0000 2.0000 0.0000 Constraint 504 543 0.8000 1.0000 2.0000 0.0000 Constraint 504 534 0.8000 1.0000 2.0000 0.0000 Constraint 504 526 0.8000 1.0000 2.0000 0.0000 Constraint 504 518 0.8000 1.0000 2.0000 0.0000 Constraint 504 509 0.8000 1.0000 2.0000 0.0000 Constraint 497 692 0.8000 1.0000 2.0000 0.0000 Constraint 497 683 0.8000 1.0000 2.0000 0.0000 Constraint 497 671 0.8000 1.0000 2.0000 0.0000 Constraint 497 659 0.8000 1.0000 2.0000 0.0000 Constraint 497 650 0.8000 1.0000 2.0000 0.0000 Constraint 497 595 0.8000 1.0000 2.0000 0.0000 Constraint 497 588 0.8000 1.0000 2.0000 0.0000 Constraint 497 572 0.8000 1.0000 2.0000 0.0000 Constraint 497 559 0.8000 1.0000 2.0000 0.0000 Constraint 497 552 0.8000 1.0000 2.0000 0.0000 Constraint 497 543 0.8000 1.0000 2.0000 0.0000 Constraint 497 534 0.8000 1.0000 2.0000 0.0000 Constraint 497 526 0.8000 1.0000 2.0000 0.0000 Constraint 497 518 0.8000 1.0000 2.0000 0.0000 Constraint 497 509 0.8000 1.0000 2.0000 0.0000 Constraint 497 504 0.8000 1.0000 2.0000 0.0000 Constraint 488 692 0.8000 1.0000 2.0000 0.0000 Constraint 488 683 0.8000 1.0000 2.0000 0.0000 Constraint 488 671 0.8000 1.0000 2.0000 0.0000 Constraint 488 659 0.8000 1.0000 2.0000 0.0000 Constraint 488 650 0.8000 1.0000 2.0000 0.0000 Constraint 488 595 0.8000 1.0000 2.0000 0.0000 Constraint 488 588 0.8000 1.0000 2.0000 0.0000 Constraint 488 581 0.8000 1.0000 2.0000 0.0000 Constraint 488 572 0.8000 1.0000 2.0000 0.0000 Constraint 488 559 0.8000 1.0000 2.0000 0.0000 Constraint 488 552 0.8000 1.0000 2.0000 0.0000 Constraint 488 543 0.8000 1.0000 2.0000 0.0000 Constraint 488 534 0.8000 1.0000 2.0000 0.0000 Constraint 488 526 0.8000 1.0000 2.0000 0.0000 Constraint 488 518 0.8000 1.0000 2.0000 0.0000 Constraint 488 509 0.8000 1.0000 2.0000 0.0000 Constraint 488 504 0.8000 1.0000 2.0000 0.0000 Constraint 488 497 0.8000 1.0000 2.0000 0.0000 Constraint 481 692 0.8000 1.0000 2.0000 0.0000 Constraint 481 683 0.8000 1.0000 2.0000 0.0000 Constraint 481 671 0.8000 1.0000 2.0000 0.0000 Constraint 481 659 0.8000 1.0000 2.0000 0.0000 Constraint 481 650 0.8000 1.0000 2.0000 0.0000 Constraint 481 642 0.8000 1.0000 2.0000 0.0000 Constraint 481 603 0.8000 1.0000 2.0000 0.0000 Constraint 481 595 0.8000 1.0000 2.0000 0.0000 Constraint 481 588 0.8000 1.0000 2.0000 0.0000 Constraint 481 572 0.8000 1.0000 2.0000 0.0000 Constraint 481 559 0.8000 1.0000 2.0000 0.0000 Constraint 481 552 0.8000 1.0000 2.0000 0.0000 Constraint 481 543 0.8000 1.0000 2.0000 0.0000 Constraint 481 534 0.8000 1.0000 2.0000 0.0000 Constraint 481 526 0.8000 1.0000 2.0000 0.0000 Constraint 481 518 0.8000 1.0000 2.0000 0.0000 Constraint 481 509 0.8000 1.0000 2.0000 0.0000 Constraint 481 504 0.8000 1.0000 2.0000 0.0000 Constraint 481 497 0.8000 1.0000 2.0000 0.0000 Constraint 481 488 0.8000 1.0000 2.0000 0.0000 Constraint 472 692 0.8000 1.0000 2.0000 0.0000 Constraint 472 683 0.8000 1.0000 2.0000 0.0000 Constraint 472 671 0.8000 1.0000 2.0000 0.0000 Constraint 472 659 0.8000 1.0000 2.0000 0.0000 Constraint 472 650 0.8000 1.0000 2.0000 0.0000 Constraint 472 642 0.8000 1.0000 2.0000 0.0000 Constraint 472 625 0.8000 1.0000 2.0000 0.0000 Constraint 472 603 0.8000 1.0000 2.0000 0.0000 Constraint 472 595 0.8000 1.0000 2.0000 0.0000 Constraint 472 588 0.8000 1.0000 2.0000 0.0000 Constraint 472 581 0.8000 1.0000 2.0000 0.0000 Constraint 472 572 0.8000 1.0000 2.0000 0.0000 Constraint 472 559 0.8000 1.0000 2.0000 0.0000 Constraint 472 552 0.8000 1.0000 2.0000 0.0000 Constraint 472 543 0.8000 1.0000 2.0000 0.0000 Constraint 472 534 0.8000 1.0000 2.0000 0.0000 Constraint 472 526 0.8000 1.0000 2.0000 0.0000 Constraint 472 518 0.8000 1.0000 2.0000 0.0000 Constraint 472 509 0.8000 1.0000 2.0000 0.0000 Constraint 472 504 0.8000 1.0000 2.0000 0.0000 Constraint 472 497 0.8000 1.0000 2.0000 0.0000 Constraint 472 488 0.8000 1.0000 2.0000 0.0000 Constraint 472 481 0.8000 1.0000 2.0000 0.0000 Constraint 465 692 0.8000 1.0000 2.0000 0.0000 Constraint 465 683 0.8000 1.0000 2.0000 0.0000 Constraint 465 671 0.8000 1.0000 2.0000 0.0000 Constraint 465 659 0.8000 1.0000 2.0000 0.0000 Constraint 465 650 0.8000 1.0000 2.0000 0.0000 Constraint 465 642 0.8000 1.0000 2.0000 0.0000 Constraint 465 633 0.8000 1.0000 2.0000 0.0000 Constraint 465 625 0.8000 1.0000 2.0000 0.0000 Constraint 465 613 0.8000 1.0000 2.0000 0.0000 Constraint 465 603 0.8000 1.0000 2.0000 0.0000 Constraint 465 595 0.8000 1.0000 2.0000 0.0000 Constraint 465 588 0.8000 1.0000 2.0000 0.0000 Constraint 465 581 0.8000 1.0000 2.0000 0.0000 Constraint 465 572 0.8000 1.0000 2.0000 0.0000 Constraint 465 559 0.8000 1.0000 2.0000 0.0000 Constraint 465 552 0.8000 1.0000 2.0000 0.0000 Constraint 465 543 0.8000 1.0000 2.0000 0.0000 Constraint 465 534 0.8000 1.0000 2.0000 0.0000 Constraint 465 526 0.8000 1.0000 2.0000 0.0000 Constraint 465 518 0.8000 1.0000 2.0000 0.0000 Constraint 465 509 0.8000 1.0000 2.0000 0.0000 Constraint 465 504 0.8000 1.0000 2.0000 0.0000 Constraint 465 497 0.8000 1.0000 2.0000 0.0000 Constraint 465 488 0.8000 1.0000 2.0000 0.0000 Constraint 465 481 0.8000 1.0000 2.0000 0.0000 Constraint 465 472 0.8000 1.0000 2.0000 0.0000 Constraint 456 692 0.8000 1.0000 2.0000 0.0000 Constraint 456 683 0.8000 1.0000 2.0000 0.0000 Constraint 456 671 0.8000 1.0000 2.0000 0.0000 Constraint 456 659 0.8000 1.0000 2.0000 0.0000 Constraint 456 650 0.8000 1.0000 2.0000 0.0000 Constraint 456 642 0.8000 1.0000 2.0000 0.0000 Constraint 456 633 0.8000 1.0000 2.0000 0.0000 Constraint 456 625 0.8000 1.0000 2.0000 0.0000 Constraint 456 613 0.8000 1.0000 2.0000 0.0000 Constraint 456 603 0.8000 1.0000 2.0000 0.0000 Constraint 456 595 0.8000 1.0000 2.0000 0.0000 Constraint 456 588 0.8000 1.0000 2.0000 0.0000 Constraint 456 581 0.8000 1.0000 2.0000 0.0000 Constraint 456 572 0.8000 1.0000 2.0000 0.0000 Constraint 456 559 0.8000 1.0000 2.0000 0.0000 Constraint 456 552 0.8000 1.0000 2.0000 0.0000 Constraint 456 543 0.8000 1.0000 2.0000 0.0000 Constraint 456 518 0.8000 1.0000 2.0000 0.0000 Constraint 456 509 0.8000 1.0000 2.0000 0.0000 Constraint 456 504 0.8000 1.0000 2.0000 0.0000 Constraint 456 497 0.8000 1.0000 2.0000 0.0000 Constraint 456 488 0.8000 1.0000 2.0000 0.0000 Constraint 456 481 0.8000 1.0000 2.0000 0.0000 Constraint 456 472 0.8000 1.0000 2.0000 0.0000 Constraint 456 465 0.8000 1.0000 2.0000 0.0000 Constraint 443 671 0.8000 1.0000 2.0000 0.0000 Constraint 443 659 0.8000 1.0000 2.0000 0.0000 Constraint 443 650 0.8000 1.0000 2.0000 0.0000 Constraint 443 642 0.8000 1.0000 2.0000 0.0000 Constraint 443 633 0.8000 1.0000 2.0000 0.0000 Constraint 443 613 0.8000 1.0000 2.0000 0.0000 Constraint 443 603 0.8000 1.0000 2.0000 0.0000 Constraint 443 595 0.8000 1.0000 2.0000 0.0000 Constraint 443 588 0.8000 1.0000 2.0000 0.0000 Constraint 443 581 0.8000 1.0000 2.0000 0.0000 Constraint 443 572 0.8000 1.0000 2.0000 0.0000 Constraint 443 559 0.8000 1.0000 2.0000 0.0000 Constraint 443 552 0.8000 1.0000 2.0000 0.0000 Constraint 443 543 0.8000 1.0000 2.0000 0.0000 Constraint 443 534 0.8000 1.0000 2.0000 0.0000 Constraint 443 526 0.8000 1.0000 2.0000 0.0000 Constraint 443 509 0.8000 1.0000 2.0000 0.0000 Constraint 443 504 0.8000 1.0000 2.0000 0.0000 Constraint 443 497 0.8000 1.0000 2.0000 0.0000 Constraint 443 488 0.8000 1.0000 2.0000 0.0000 Constraint 443 481 0.8000 1.0000 2.0000 0.0000 Constraint 443 472 0.8000 1.0000 2.0000 0.0000 Constraint 443 465 0.8000 1.0000 2.0000 0.0000 Constraint 443 456 0.8000 1.0000 2.0000 0.0000 Constraint 435 692 0.8000 1.0000 2.0000 0.0000 Constraint 435 683 0.8000 1.0000 2.0000 0.0000 Constraint 435 671 0.8000 1.0000 2.0000 0.0000 Constraint 435 659 0.8000 1.0000 2.0000 0.0000 Constraint 435 650 0.8000 1.0000 2.0000 0.0000 Constraint 435 642 0.8000 1.0000 2.0000 0.0000 Constraint 435 633 0.8000 1.0000 2.0000 0.0000 Constraint 435 588 0.8000 1.0000 2.0000 0.0000 Constraint 435 581 0.8000 1.0000 2.0000 0.0000 Constraint 435 572 0.8000 1.0000 2.0000 0.0000 Constraint 435 559 0.8000 1.0000 2.0000 0.0000 Constraint 435 543 0.8000 1.0000 2.0000 0.0000 Constraint 435 534 0.8000 1.0000 2.0000 0.0000 Constraint 435 509 0.8000 1.0000 2.0000 0.0000 Constraint 435 497 0.8000 1.0000 2.0000 0.0000 Constraint 435 488 0.8000 1.0000 2.0000 0.0000 Constraint 435 481 0.8000 1.0000 2.0000 0.0000 Constraint 435 472 0.8000 1.0000 2.0000 0.0000 Constraint 435 465 0.8000 1.0000 2.0000 0.0000 Constraint 435 456 0.8000 1.0000 2.0000 0.0000 Constraint 435 443 0.8000 1.0000 2.0000 0.0000 Constraint 429 692 0.8000 1.0000 2.0000 0.0000 Constraint 429 683 0.8000 1.0000 2.0000 0.0000 Constraint 429 659 0.8000 1.0000 2.0000 0.0000 Constraint 429 650 0.8000 1.0000 2.0000 0.0000 Constraint 429 642 0.8000 1.0000 2.0000 0.0000 Constraint 429 633 0.8000 1.0000 2.0000 0.0000 Constraint 429 613 0.8000 1.0000 2.0000 0.0000 Constraint 429 595 0.8000 1.0000 2.0000 0.0000 Constraint 429 588 0.8000 1.0000 2.0000 0.0000 Constraint 429 581 0.8000 1.0000 2.0000 0.0000 Constraint 429 572 0.8000 1.0000 2.0000 0.0000 Constraint 429 559 0.8000 1.0000 2.0000 0.0000 Constraint 429 552 0.8000 1.0000 2.0000 0.0000 Constraint 429 543 0.8000 1.0000 2.0000 0.0000 Constraint 429 534 0.8000 1.0000 2.0000 0.0000 Constraint 429 526 0.8000 1.0000 2.0000 0.0000 Constraint 429 518 0.8000 1.0000 2.0000 0.0000 Constraint 429 509 0.8000 1.0000 2.0000 0.0000 Constraint 429 504 0.8000 1.0000 2.0000 0.0000 Constraint 429 488 0.8000 1.0000 2.0000 0.0000 Constraint 429 481 0.8000 1.0000 2.0000 0.0000 Constraint 429 472 0.8000 1.0000 2.0000 0.0000 Constraint 429 465 0.8000 1.0000 2.0000 0.0000 Constraint 429 456 0.8000 1.0000 2.0000 0.0000 Constraint 429 443 0.8000 1.0000 2.0000 0.0000 Constraint 429 435 0.8000 1.0000 2.0000 0.0000 Constraint 418 692 0.8000 1.0000 2.0000 0.0000 Constraint 418 683 0.8000 1.0000 2.0000 0.0000 Constraint 418 671 0.8000 1.0000 2.0000 0.0000 Constraint 418 659 0.8000 1.0000 2.0000 0.0000 Constraint 418 650 0.8000 1.0000 2.0000 0.0000 Constraint 418 642 0.8000 1.0000 2.0000 0.0000 Constraint 418 633 0.8000 1.0000 2.0000 0.0000 Constraint 418 625 0.8000 1.0000 2.0000 0.0000 Constraint 418 613 0.8000 1.0000 2.0000 0.0000 Constraint 418 603 0.8000 1.0000 2.0000 0.0000 Constraint 418 595 0.8000 1.0000 2.0000 0.0000 Constraint 418 588 0.8000 1.0000 2.0000 0.0000 Constraint 418 581 0.8000 1.0000 2.0000 0.0000 Constraint 418 572 0.8000 1.0000 2.0000 0.0000 Constraint 418 559 0.8000 1.0000 2.0000 0.0000 Constraint 418 534 0.8000 1.0000 2.0000 0.0000 Constraint 418 481 0.8000 1.0000 2.0000 0.0000 Constraint 418 472 0.8000 1.0000 2.0000 0.0000 Constraint 418 465 0.8000 1.0000 2.0000 0.0000 Constraint 418 456 0.8000 1.0000 2.0000 0.0000 Constraint 418 443 0.8000 1.0000 2.0000 0.0000 Constraint 418 435 0.8000 1.0000 2.0000 0.0000 Constraint 418 429 0.8000 1.0000 2.0000 0.0000 Constraint 406 692 0.8000 1.0000 2.0000 0.0000 Constraint 406 683 0.8000 1.0000 2.0000 0.0000 Constraint 406 671 0.8000 1.0000 2.0000 0.0000 Constraint 406 659 0.8000 1.0000 2.0000 0.0000 Constraint 406 650 0.8000 1.0000 2.0000 0.0000 Constraint 406 642 0.8000 1.0000 2.0000 0.0000 Constraint 406 633 0.8000 1.0000 2.0000 0.0000 Constraint 406 625 0.8000 1.0000 2.0000 0.0000 Constraint 406 481 0.8000 1.0000 2.0000 0.0000 Constraint 406 465 0.8000 1.0000 2.0000 0.0000 Constraint 406 456 0.8000 1.0000 2.0000 0.0000 Constraint 406 443 0.8000 1.0000 2.0000 0.0000 Constraint 406 435 0.8000 1.0000 2.0000 0.0000 Constraint 406 429 0.8000 1.0000 2.0000 0.0000 Constraint 406 418 0.8000 1.0000 2.0000 0.0000 Constraint 399 692 0.8000 1.0000 2.0000 0.0000 Constraint 399 671 0.8000 1.0000 2.0000 0.0000 Constraint 399 659 0.8000 1.0000 2.0000 0.0000 Constraint 399 534 0.8000 1.0000 2.0000 0.0000 Constraint 399 456 0.8000 1.0000 2.0000 0.0000 Constraint 399 443 0.8000 1.0000 2.0000 0.0000 Constraint 399 435 0.8000 1.0000 2.0000 0.0000 Constraint 399 429 0.8000 1.0000 2.0000 0.0000 Constraint 399 418 0.8000 1.0000 2.0000 0.0000 Constraint 399 406 0.8000 1.0000 2.0000 0.0000 Constraint 388 559 0.8000 1.0000 2.0000 0.0000 Constraint 388 552 0.8000 1.0000 2.0000 0.0000 Constraint 388 509 0.8000 1.0000 2.0000 0.0000 Constraint 388 504 0.8000 1.0000 2.0000 0.0000 Constraint 388 497 0.8000 1.0000 2.0000 0.0000 Constraint 388 456 0.8000 1.0000 2.0000 0.0000 Constraint 388 443 0.8000 1.0000 2.0000 0.0000 Constraint 388 435 0.8000 1.0000 2.0000 0.0000 Constraint 388 429 0.8000 1.0000 2.0000 0.0000 Constraint 388 418 0.8000 1.0000 2.0000 0.0000 Constraint 388 406 0.8000 1.0000 2.0000 0.0000 Constraint 388 399 0.8000 1.0000 2.0000 0.0000 Constraint 380 559 0.8000 1.0000 2.0000 0.0000 Constraint 380 552 0.8000 1.0000 2.0000 0.0000 Constraint 380 543 0.8000 1.0000 2.0000 0.0000 Constraint 380 435 0.8000 1.0000 2.0000 0.0000 Constraint 380 429 0.8000 1.0000 2.0000 0.0000 Constraint 380 418 0.8000 1.0000 2.0000 0.0000 Constraint 380 406 0.8000 1.0000 2.0000 0.0000 Constraint 380 399 0.8000 1.0000 2.0000 0.0000 Constraint 380 388 0.8000 1.0000 2.0000 0.0000 Constraint 371 588 0.8000 1.0000 2.0000 0.0000 Constraint 371 581 0.8000 1.0000 2.0000 0.0000 Constraint 371 572 0.8000 1.0000 2.0000 0.0000 Constraint 371 559 0.8000 1.0000 2.0000 0.0000 Constraint 371 518 0.8000 1.0000 2.0000 0.0000 Constraint 371 509 0.8000 1.0000 2.0000 0.0000 Constraint 371 504 0.8000 1.0000 2.0000 0.0000 Constraint 371 472 0.8000 1.0000 2.0000 0.0000 Constraint 371 465 0.8000 1.0000 2.0000 0.0000 Constraint 371 456 0.8000 1.0000 2.0000 0.0000 Constraint 371 435 0.8000 1.0000 2.0000 0.0000 Constraint 371 429 0.8000 1.0000 2.0000 0.0000 Constraint 371 418 0.8000 1.0000 2.0000 0.0000 Constraint 371 406 0.8000 1.0000 2.0000 0.0000 Constraint 371 399 0.8000 1.0000 2.0000 0.0000 Constraint 371 388 0.8000 1.0000 2.0000 0.0000 Constraint 371 380 0.8000 1.0000 2.0000 0.0000 Constraint 363 588 0.8000 1.0000 2.0000 0.0000 Constraint 363 581 0.8000 1.0000 2.0000 0.0000 Constraint 363 572 0.8000 1.0000 2.0000 0.0000 Constraint 363 559 0.8000 1.0000 2.0000 0.0000 Constraint 363 518 0.8000 1.0000 2.0000 0.0000 Constraint 363 509 0.8000 1.0000 2.0000 0.0000 Constraint 363 488 0.8000 1.0000 2.0000 0.0000 Constraint 363 481 0.8000 1.0000 2.0000 0.0000 Constraint 363 472 0.8000 1.0000 2.0000 0.0000 Constraint 363 465 0.8000 1.0000 2.0000 0.0000 Constraint 363 456 0.8000 1.0000 2.0000 0.0000 Constraint 363 435 0.8000 1.0000 2.0000 0.0000 Constraint 363 429 0.8000 1.0000 2.0000 0.0000 Constraint 363 418 0.8000 1.0000 2.0000 0.0000 Constraint 363 406 0.8000 1.0000 2.0000 0.0000 Constraint 363 399 0.8000 1.0000 2.0000 0.0000 Constraint 363 388 0.8000 1.0000 2.0000 0.0000 Constraint 363 380 0.8000 1.0000 2.0000 0.0000 Constraint 363 371 0.8000 1.0000 2.0000 0.0000 Constraint 354 692 0.8000 1.0000 2.0000 0.0000 Constraint 354 603 0.8000 1.0000 2.0000 0.0000 Constraint 354 595 0.8000 1.0000 2.0000 0.0000 Constraint 354 588 0.8000 1.0000 2.0000 0.0000 Constraint 354 581 0.8000 1.0000 2.0000 0.0000 Constraint 354 572 0.8000 1.0000 2.0000 0.0000 Constraint 354 559 0.8000 1.0000 2.0000 0.0000 Constraint 354 552 0.8000 1.0000 2.0000 0.0000 Constraint 354 543 0.8000 1.0000 2.0000 0.0000 Constraint 354 534 0.8000 1.0000 2.0000 0.0000 Constraint 354 488 0.8000 1.0000 2.0000 0.0000 Constraint 354 481 0.8000 1.0000 2.0000 0.0000 Constraint 354 472 0.8000 1.0000 2.0000 0.0000 Constraint 354 465 0.8000 1.0000 2.0000 0.0000 Constraint 354 456 0.8000 1.0000 2.0000 0.0000 Constraint 354 443 0.8000 1.0000 2.0000 0.0000 Constraint 354 435 0.8000 1.0000 2.0000 0.0000 Constraint 354 429 0.8000 1.0000 2.0000 0.0000 Constraint 354 418 0.8000 1.0000 2.0000 0.0000 Constraint 354 406 0.8000 1.0000 2.0000 0.0000 Constraint 354 399 0.8000 1.0000 2.0000 0.0000 Constraint 354 388 0.8000 1.0000 2.0000 0.0000 Constraint 354 380 0.8000 1.0000 2.0000 0.0000 Constraint 354 371 0.8000 1.0000 2.0000 0.0000 Constraint 354 363 0.8000 1.0000 2.0000 0.0000 Constraint 349 692 0.8000 1.0000 2.0000 0.0000 Constraint 349 603 0.8000 1.0000 2.0000 0.0000 Constraint 349 588 0.8000 1.0000 2.0000 0.0000 Constraint 349 581 0.8000 1.0000 2.0000 0.0000 Constraint 349 572 0.8000 1.0000 2.0000 0.0000 Constraint 349 559 0.8000 1.0000 2.0000 0.0000 Constraint 349 552 0.8000 1.0000 2.0000 0.0000 Constraint 349 534 0.8000 1.0000 2.0000 0.0000 Constraint 349 526 0.8000 1.0000 2.0000 0.0000 Constraint 349 518 0.8000 1.0000 2.0000 0.0000 Constraint 349 509 0.8000 1.0000 2.0000 0.0000 Constraint 349 497 0.8000 1.0000 2.0000 0.0000 Constraint 349 488 0.8000 1.0000 2.0000 0.0000 Constraint 349 481 0.8000 1.0000 2.0000 0.0000 Constraint 349 472 0.8000 1.0000 2.0000 0.0000 Constraint 349 465 0.8000 1.0000 2.0000 0.0000 Constraint 349 456 0.8000 1.0000 2.0000 0.0000 Constraint 349 443 0.8000 1.0000 2.0000 0.0000 Constraint 349 435 0.8000 1.0000 2.0000 0.0000 Constraint 349 429 0.8000 1.0000 2.0000 0.0000 Constraint 349 418 0.8000 1.0000 2.0000 0.0000 Constraint 349 406 0.8000 1.0000 2.0000 0.0000 Constraint 349 399 0.8000 1.0000 2.0000 0.0000 Constraint 349 388 0.8000 1.0000 2.0000 0.0000 Constraint 349 380 0.8000 1.0000 2.0000 0.0000 Constraint 349 371 0.8000 1.0000 2.0000 0.0000 Constraint 349 363 0.8000 1.0000 2.0000 0.0000 Constraint 349 354 0.8000 1.0000 2.0000 0.0000 Constraint 342 588 0.8000 1.0000 2.0000 0.0000 Constraint 342 559 0.8000 1.0000 2.0000 0.0000 Constraint 342 543 0.8000 1.0000 2.0000 0.0000 Constraint 342 534 0.8000 1.0000 2.0000 0.0000 Constraint 342 518 0.8000 1.0000 2.0000 0.0000 Constraint 342 497 0.8000 1.0000 2.0000 0.0000 Constraint 342 488 0.8000 1.0000 2.0000 0.0000 Constraint 342 481 0.8000 1.0000 2.0000 0.0000 Constraint 342 472 0.8000 1.0000 2.0000 0.0000 Constraint 342 465 0.8000 1.0000 2.0000 0.0000 Constraint 342 456 0.8000 1.0000 2.0000 0.0000 Constraint 342 443 0.8000 1.0000 2.0000 0.0000 Constraint 342 435 0.8000 1.0000 2.0000 0.0000 Constraint 342 429 0.8000 1.0000 2.0000 0.0000 Constraint 342 418 0.8000 1.0000 2.0000 0.0000 Constraint 342 406 0.8000 1.0000 2.0000 0.0000 Constraint 342 399 0.8000 1.0000 2.0000 0.0000 Constraint 342 388 0.8000 1.0000 2.0000 0.0000 Constraint 342 380 0.8000 1.0000 2.0000 0.0000 Constraint 342 371 0.8000 1.0000 2.0000 0.0000 Constraint 342 363 0.8000 1.0000 2.0000 0.0000 Constraint 342 354 0.8000 1.0000 2.0000 0.0000 Constraint 342 349 0.8000 1.0000 2.0000 0.0000 Constraint 335 692 0.8000 1.0000 2.0000 0.0000 Constraint 335 671 0.8000 1.0000 2.0000 0.0000 Constraint 335 659 0.8000 1.0000 2.0000 0.0000 Constraint 335 588 0.8000 1.0000 2.0000 0.0000 Constraint 335 572 0.8000 1.0000 2.0000 0.0000 Constraint 335 559 0.8000 1.0000 2.0000 0.0000 Constraint 335 552 0.8000 1.0000 2.0000 0.0000 Constraint 335 543 0.8000 1.0000 2.0000 0.0000 Constraint 335 526 0.8000 1.0000 2.0000 0.0000 Constraint 335 509 0.8000 1.0000 2.0000 0.0000 Constraint 335 504 0.8000 1.0000 2.0000 0.0000 Constraint 335 497 0.8000 1.0000 2.0000 0.0000 Constraint 335 488 0.8000 1.0000 2.0000 0.0000 Constraint 335 481 0.8000 1.0000 2.0000 0.0000 Constraint 335 472 0.8000 1.0000 2.0000 0.0000 Constraint 335 465 0.8000 1.0000 2.0000 0.0000 Constraint 335 456 0.8000 1.0000 2.0000 0.0000 Constraint 335 443 0.8000 1.0000 2.0000 0.0000 Constraint 335 435 0.8000 1.0000 2.0000 0.0000 Constraint 335 429 0.8000 1.0000 2.0000 0.0000 Constraint 335 418 0.8000 1.0000 2.0000 0.0000 Constraint 335 406 0.8000 1.0000 2.0000 0.0000 Constraint 335 399 0.8000 1.0000 2.0000 0.0000 Constraint 335 388 0.8000 1.0000 2.0000 0.0000 Constraint 335 380 0.8000 1.0000 2.0000 0.0000 Constraint 335 371 0.8000 1.0000 2.0000 0.0000 Constraint 335 363 0.8000 1.0000 2.0000 0.0000 Constraint 335 354 0.8000 1.0000 2.0000 0.0000 Constraint 335 349 0.8000 1.0000 2.0000 0.0000 Constraint 335 342 0.8000 1.0000 2.0000 0.0000 Constraint 323 642 0.8000 1.0000 2.0000 0.0000 Constraint 323 559 0.8000 1.0000 2.0000 0.0000 Constraint 323 552 0.8000 1.0000 2.0000 0.0000 Constraint 323 543 0.8000 1.0000 2.0000 0.0000 Constraint 323 534 0.8000 1.0000 2.0000 0.0000 Constraint 323 526 0.8000 1.0000 2.0000 0.0000 Constraint 323 504 0.8000 1.0000 2.0000 0.0000 Constraint 323 497 0.8000 1.0000 2.0000 0.0000 Constraint 323 488 0.8000 1.0000 2.0000 0.0000 Constraint 323 481 0.8000 1.0000 2.0000 0.0000 Constraint 323 472 0.8000 1.0000 2.0000 0.0000 Constraint 323 465 0.8000 1.0000 2.0000 0.0000 Constraint 323 456 0.8000 1.0000 2.0000 0.0000 Constraint 323 443 0.8000 1.0000 2.0000 0.0000 Constraint 323 435 0.8000 1.0000 2.0000 0.0000 Constraint 323 429 0.8000 1.0000 2.0000 0.0000 Constraint 323 418 0.8000 1.0000 2.0000 0.0000 Constraint 323 406 0.8000 1.0000 2.0000 0.0000 Constraint 323 399 0.8000 1.0000 2.0000 0.0000 Constraint 323 388 0.8000 1.0000 2.0000 0.0000 Constraint 323 380 0.8000 1.0000 2.0000 0.0000 Constraint 323 371 0.8000 1.0000 2.0000 0.0000 Constraint 323 363 0.8000 1.0000 2.0000 0.0000 Constraint 323 354 0.8000 1.0000 2.0000 0.0000 Constraint 323 349 0.8000 1.0000 2.0000 0.0000 Constraint 323 342 0.8000 1.0000 2.0000 0.0000 Constraint 323 335 0.8000 1.0000 2.0000 0.0000 Constraint 315 659 0.8000 1.0000 2.0000 0.0000 Constraint 315 650 0.8000 1.0000 2.0000 0.0000 Constraint 315 642 0.8000 1.0000 2.0000 0.0000 Constraint 315 633 0.8000 1.0000 2.0000 0.0000 Constraint 315 588 0.8000 1.0000 2.0000 0.0000 Constraint 315 581 0.8000 1.0000 2.0000 0.0000 Constraint 315 572 0.8000 1.0000 2.0000 0.0000 Constraint 315 559 0.8000 1.0000 2.0000 0.0000 Constraint 315 552 0.8000 1.0000 2.0000 0.0000 Constraint 315 543 0.8000 1.0000 2.0000 0.0000 Constraint 315 534 0.8000 1.0000 2.0000 0.0000 Constraint 315 526 0.8000 1.0000 2.0000 0.0000 Constraint 315 518 0.8000 1.0000 2.0000 0.0000 Constraint 315 509 0.8000 1.0000 2.0000 0.0000 Constraint 315 504 0.8000 1.0000 2.0000 0.0000 Constraint 315 497 0.8000 1.0000 2.0000 0.0000 Constraint 315 488 0.8000 1.0000 2.0000 0.0000 Constraint 315 481 0.8000 1.0000 2.0000 0.0000 Constraint 315 472 0.8000 1.0000 2.0000 0.0000 Constraint 315 465 0.8000 1.0000 2.0000 0.0000 Constraint 315 456 0.8000 1.0000 2.0000 0.0000 Constraint 315 443 0.8000 1.0000 2.0000 0.0000 Constraint 315 435 0.8000 1.0000 2.0000 0.0000 Constraint 315 429 0.8000 1.0000 2.0000 0.0000 Constraint 315 418 0.8000 1.0000 2.0000 0.0000 Constraint 315 406 0.8000 1.0000 2.0000 0.0000 Constraint 315 399 0.8000 1.0000 2.0000 0.0000 Constraint 315 388 0.8000 1.0000 2.0000 0.0000 Constraint 315 380 0.8000 1.0000 2.0000 0.0000 Constraint 315 371 0.8000 1.0000 2.0000 0.0000 Constraint 315 363 0.8000 1.0000 2.0000 0.0000 Constraint 315 354 0.8000 1.0000 2.0000 0.0000 Constraint 315 349 0.8000 1.0000 2.0000 0.0000 Constraint 315 342 0.8000 1.0000 2.0000 0.0000 Constraint 315 335 0.8000 1.0000 2.0000 0.0000 Constraint 315 323 0.8000 1.0000 2.0000 0.0000 Constraint 310 692 0.8000 1.0000 2.0000 0.0000 Constraint 310 683 0.8000 1.0000 2.0000 0.0000 Constraint 310 671 0.8000 1.0000 2.0000 0.0000 Constraint 310 659 0.8000 1.0000 2.0000 0.0000 Constraint 310 650 0.8000 1.0000 2.0000 0.0000 Constraint 310 642 0.8000 1.0000 2.0000 0.0000 Constraint 310 633 0.8000 1.0000 2.0000 0.0000 Constraint 310 625 0.8000 1.0000 2.0000 0.0000 Constraint 310 613 0.8000 1.0000 2.0000 0.0000 Constraint 310 603 0.8000 1.0000 2.0000 0.0000 Constraint 310 595 0.8000 1.0000 2.0000 0.0000 Constraint 310 588 0.8000 1.0000 2.0000 0.0000 Constraint 310 581 0.8000 1.0000 2.0000 0.0000 Constraint 310 572 0.8000 1.0000 2.0000 0.0000 Constraint 310 559 0.8000 1.0000 2.0000 0.0000 Constraint 310 552 0.8000 1.0000 2.0000 0.0000 Constraint 310 543 0.8000 1.0000 2.0000 0.0000 Constraint 310 534 0.8000 1.0000 2.0000 0.0000 Constraint 310 526 0.8000 1.0000 2.0000 0.0000 Constraint 310 518 0.8000 1.0000 2.0000 0.0000 Constraint 310 509 0.8000 1.0000 2.0000 0.0000 Constraint 310 504 0.8000 1.0000 2.0000 0.0000 Constraint 310 497 0.8000 1.0000 2.0000 0.0000 Constraint 310 488 0.8000 1.0000 2.0000 0.0000 Constraint 310 481 0.8000 1.0000 2.0000 0.0000 Constraint 310 472 0.8000 1.0000 2.0000 0.0000 Constraint 310 465 0.8000 1.0000 2.0000 0.0000 Constraint 310 456 0.8000 1.0000 2.0000 0.0000 Constraint 310 443 0.8000 1.0000 2.0000 0.0000 Constraint 310 435 0.8000 1.0000 2.0000 0.0000 Constraint 310 429 0.8000 1.0000 2.0000 0.0000 Constraint 310 418 0.8000 1.0000 2.0000 0.0000 Constraint 310 406 0.8000 1.0000 2.0000 0.0000 Constraint 310 399 0.8000 1.0000 2.0000 0.0000 Constraint 310 388 0.8000 1.0000 2.0000 0.0000 Constraint 310 380 0.8000 1.0000 2.0000 0.0000 Constraint 310 371 0.8000 1.0000 2.0000 0.0000 Constraint 310 363 0.8000 1.0000 2.0000 0.0000 Constraint 310 354 0.8000 1.0000 2.0000 0.0000 Constraint 310 349 0.8000 1.0000 2.0000 0.0000 Constraint 310 342 0.8000 1.0000 2.0000 0.0000 Constraint 310 335 0.8000 1.0000 2.0000 0.0000 Constraint 310 323 0.8000 1.0000 2.0000 0.0000 Constraint 310 315 0.8000 1.0000 2.0000 0.0000 Constraint 305 683 0.8000 1.0000 2.0000 0.0000 Constraint 305 659 0.8000 1.0000 2.0000 0.0000 Constraint 305 650 0.8000 1.0000 2.0000 0.0000 Constraint 305 642 0.8000 1.0000 2.0000 0.0000 Constraint 305 633 0.8000 1.0000 2.0000 0.0000 Constraint 305 588 0.8000 1.0000 2.0000 0.0000 Constraint 305 581 0.8000 1.0000 2.0000 0.0000 Constraint 305 559 0.8000 1.0000 2.0000 0.0000 Constraint 305 552 0.8000 1.0000 2.0000 0.0000 Constraint 305 543 0.8000 1.0000 2.0000 0.0000 Constraint 305 534 0.8000 1.0000 2.0000 0.0000 Constraint 305 526 0.8000 1.0000 2.0000 0.0000 Constraint 305 518 0.8000 1.0000 2.0000 0.0000 Constraint 305 509 0.8000 1.0000 2.0000 0.0000 Constraint 305 504 0.8000 1.0000 2.0000 0.0000 Constraint 305 497 0.8000 1.0000 2.0000 0.0000 Constraint 305 488 0.8000 1.0000 2.0000 0.0000 Constraint 305 481 0.8000 1.0000 2.0000 0.0000 Constraint 305 472 0.8000 1.0000 2.0000 0.0000 Constraint 305 465 0.8000 1.0000 2.0000 0.0000 Constraint 305 456 0.8000 1.0000 2.0000 0.0000 Constraint 305 443 0.8000 1.0000 2.0000 0.0000 Constraint 305 435 0.8000 1.0000 2.0000 0.0000 Constraint 305 429 0.8000 1.0000 2.0000 0.0000 Constraint 305 418 0.8000 1.0000 2.0000 0.0000 Constraint 305 406 0.8000 1.0000 2.0000 0.0000 Constraint 305 399 0.8000 1.0000 2.0000 0.0000 Constraint 305 388 0.8000 1.0000 2.0000 0.0000 Constraint 305 380 0.8000 1.0000 2.0000 0.0000 Constraint 305 371 0.8000 1.0000 2.0000 0.0000 Constraint 305 363 0.8000 1.0000 2.0000 0.0000 Constraint 305 354 0.8000 1.0000 2.0000 0.0000 Constraint 305 349 0.8000 1.0000 2.0000 0.0000 Constraint 305 342 0.8000 1.0000 2.0000 0.0000 Constraint 305 335 0.8000 1.0000 2.0000 0.0000 Constraint 305 323 0.8000 1.0000 2.0000 0.0000 Constraint 305 315 0.8000 1.0000 2.0000 0.0000 Constraint 305 310 0.8000 1.0000 2.0000 0.0000 Constraint 298 659 0.8000 1.0000 2.0000 0.0000 Constraint 298 588 0.8000 1.0000 2.0000 0.0000 Constraint 298 559 0.8000 1.0000 2.0000 0.0000 Constraint 298 552 0.8000 1.0000 2.0000 0.0000 Constraint 298 543 0.8000 1.0000 2.0000 0.0000 Constraint 298 534 0.8000 1.0000 2.0000 0.0000 Constraint 298 526 0.8000 1.0000 2.0000 0.0000 Constraint 298 518 0.8000 1.0000 2.0000 0.0000 Constraint 298 509 0.8000 1.0000 2.0000 0.0000 Constraint 298 504 0.8000 1.0000 2.0000 0.0000 Constraint 298 497 0.8000 1.0000 2.0000 0.0000 Constraint 298 488 0.8000 1.0000 2.0000 0.0000 Constraint 298 481 0.8000 1.0000 2.0000 0.0000 Constraint 298 472 0.8000 1.0000 2.0000 0.0000 Constraint 298 465 0.8000 1.0000 2.0000 0.0000 Constraint 298 456 0.8000 1.0000 2.0000 0.0000 Constraint 298 443 0.8000 1.0000 2.0000 0.0000 Constraint 298 435 0.8000 1.0000 2.0000 0.0000 Constraint 298 429 0.8000 1.0000 2.0000 0.0000 Constraint 298 418 0.8000 1.0000 2.0000 0.0000 Constraint 298 406 0.8000 1.0000 2.0000 0.0000 Constraint 298 399 0.8000 1.0000 2.0000 0.0000 Constraint 298 388 0.8000 1.0000 2.0000 0.0000 Constraint 298 380 0.8000 1.0000 2.0000 0.0000 Constraint 298 371 0.8000 1.0000 2.0000 0.0000 Constraint 298 363 0.8000 1.0000 2.0000 0.0000 Constraint 298 354 0.8000 1.0000 2.0000 0.0000 Constraint 298 349 0.8000 1.0000 2.0000 0.0000 Constraint 298 342 0.8000 1.0000 2.0000 0.0000 Constraint 298 335 0.8000 1.0000 2.0000 0.0000 Constraint 298 323 0.8000 1.0000 2.0000 0.0000 Constraint 298 315 0.8000 1.0000 2.0000 0.0000 Constraint 298 310 0.8000 1.0000 2.0000 0.0000 Constraint 298 305 0.8000 1.0000 2.0000 0.0000 Constraint 291 692 0.8000 1.0000 2.0000 0.0000 Constraint 291 683 0.8000 1.0000 2.0000 0.0000 Constraint 291 659 0.8000 1.0000 2.0000 0.0000 Constraint 291 633 0.8000 1.0000 2.0000 0.0000 Constraint 291 613 0.8000 1.0000 2.0000 0.0000 Constraint 291 603 0.8000 1.0000 2.0000 0.0000 Constraint 291 595 0.8000 1.0000 2.0000 0.0000 Constraint 291 588 0.8000 1.0000 2.0000 0.0000 Constraint 291 581 0.8000 1.0000 2.0000 0.0000 Constraint 291 572 0.8000 1.0000 2.0000 0.0000 Constraint 291 559 0.8000 1.0000 2.0000 0.0000 Constraint 291 552 0.8000 1.0000 2.0000 0.0000 Constraint 291 543 0.8000 1.0000 2.0000 0.0000 Constraint 291 534 0.8000 1.0000 2.0000 0.0000 Constraint 291 526 0.8000 1.0000 2.0000 0.0000 Constraint 291 518 0.8000 1.0000 2.0000 0.0000 Constraint 291 509 0.8000 1.0000 2.0000 0.0000 Constraint 291 504 0.8000 1.0000 2.0000 0.0000 Constraint 291 497 0.8000 1.0000 2.0000 0.0000 Constraint 291 488 0.8000 1.0000 2.0000 0.0000 Constraint 291 481 0.8000 1.0000 2.0000 0.0000 Constraint 291 472 0.8000 1.0000 2.0000 0.0000 Constraint 291 465 0.8000 1.0000 2.0000 0.0000 Constraint 291 456 0.8000 1.0000 2.0000 0.0000 Constraint 291 443 0.8000 1.0000 2.0000 0.0000 Constraint 291 435 0.8000 1.0000 2.0000 0.0000 Constraint 291 429 0.8000 1.0000 2.0000 0.0000 Constraint 291 418 0.8000 1.0000 2.0000 0.0000 Constraint 291 406 0.8000 1.0000 2.0000 0.0000 Constraint 291 399 0.8000 1.0000 2.0000 0.0000 Constraint 291 388 0.8000 1.0000 2.0000 0.0000 Constraint 291 380 0.8000 1.0000 2.0000 0.0000 Constraint 291 371 0.8000 1.0000 2.0000 0.0000 Constraint 291 363 0.8000 1.0000 2.0000 0.0000 Constraint 291 354 0.8000 1.0000 2.0000 0.0000 Constraint 291 349 0.8000 1.0000 2.0000 0.0000 Constraint 291 342 0.8000 1.0000 2.0000 0.0000 Constraint 291 335 0.8000 1.0000 2.0000 0.0000 Constraint 291 323 0.8000 1.0000 2.0000 0.0000 Constraint 291 315 0.8000 1.0000 2.0000 0.0000 Constraint 291 310 0.8000 1.0000 2.0000 0.0000 Constraint 291 305 0.8000 1.0000 2.0000 0.0000 Constraint 291 298 0.8000 1.0000 2.0000 0.0000 Constraint 283 692 0.8000 1.0000 2.0000 0.0000 Constraint 283 683 0.8000 1.0000 2.0000 0.0000 Constraint 283 671 0.8000 1.0000 2.0000 0.0000 Constraint 283 659 0.8000 1.0000 2.0000 0.0000 Constraint 283 650 0.8000 1.0000 2.0000 0.0000 Constraint 283 642 0.8000 1.0000 2.0000 0.0000 Constraint 283 633 0.8000 1.0000 2.0000 0.0000 Constraint 283 625 0.8000 1.0000 2.0000 0.0000 Constraint 283 613 0.8000 1.0000 2.0000 0.0000 Constraint 283 603 0.8000 1.0000 2.0000 0.0000 Constraint 283 595 0.8000 1.0000 2.0000 0.0000 Constraint 283 588 0.8000 1.0000 2.0000 0.0000 Constraint 283 581 0.8000 1.0000 2.0000 0.0000 Constraint 283 572 0.8000 1.0000 2.0000 0.0000 Constraint 283 559 0.8000 1.0000 2.0000 0.0000 Constraint 283 552 0.8000 1.0000 2.0000 0.0000 Constraint 283 543 0.8000 1.0000 2.0000 0.0000 Constraint 283 534 0.8000 1.0000 2.0000 0.0000 Constraint 283 526 0.8000 1.0000 2.0000 0.0000 Constraint 283 518 0.8000 1.0000 2.0000 0.0000 Constraint 283 509 0.8000 1.0000 2.0000 0.0000 Constraint 283 504 0.8000 1.0000 2.0000 0.0000 Constraint 283 497 0.8000 1.0000 2.0000 0.0000 Constraint 283 488 0.8000 1.0000 2.0000 0.0000 Constraint 283 481 0.8000 1.0000 2.0000 0.0000 Constraint 283 472 0.8000 1.0000 2.0000 0.0000 Constraint 283 465 0.8000 1.0000 2.0000 0.0000 Constraint 283 456 0.8000 1.0000 2.0000 0.0000 Constraint 283 443 0.8000 1.0000 2.0000 0.0000 Constraint 283 435 0.8000 1.0000 2.0000 0.0000 Constraint 283 429 0.8000 1.0000 2.0000 0.0000 Constraint 283 418 0.8000 1.0000 2.0000 0.0000 Constraint 283 406 0.8000 1.0000 2.0000 0.0000 Constraint 283 399 0.8000 1.0000 2.0000 0.0000 Constraint 283 388 0.8000 1.0000 2.0000 0.0000 Constraint 283 380 0.8000 1.0000 2.0000 0.0000 Constraint 283 371 0.8000 1.0000 2.0000 0.0000 Constraint 283 363 0.8000 1.0000 2.0000 0.0000 Constraint 283 354 0.8000 1.0000 2.0000 0.0000 Constraint 283 349 0.8000 1.0000 2.0000 0.0000 Constraint 283 342 0.8000 1.0000 2.0000 0.0000 Constraint 283 335 0.8000 1.0000 2.0000 0.0000 Constraint 283 323 0.8000 1.0000 2.0000 0.0000 Constraint 283 315 0.8000 1.0000 2.0000 0.0000 Constraint 283 310 0.8000 1.0000 2.0000 0.0000 Constraint 283 305 0.8000 1.0000 2.0000 0.0000 Constraint 283 298 0.8000 1.0000 2.0000 0.0000 Constraint 283 291 0.8000 1.0000 2.0000 0.0000 Constraint 275 692 0.8000 1.0000 2.0000 0.0000 Constraint 275 683 0.8000 1.0000 2.0000 0.0000 Constraint 275 671 0.8000 1.0000 2.0000 0.0000 Constraint 275 659 0.8000 1.0000 2.0000 0.0000 Constraint 275 650 0.8000 1.0000 2.0000 0.0000 Constraint 275 642 0.8000 1.0000 2.0000 0.0000 Constraint 275 633 0.8000 1.0000 2.0000 0.0000 Constraint 275 625 0.8000 1.0000 2.0000 0.0000 Constraint 275 613 0.8000 1.0000 2.0000 0.0000 Constraint 275 603 0.8000 1.0000 2.0000 0.0000 Constraint 275 595 0.8000 1.0000 2.0000 0.0000 Constraint 275 588 0.8000 1.0000 2.0000 0.0000 Constraint 275 581 0.8000 1.0000 2.0000 0.0000 Constraint 275 572 0.8000 1.0000 2.0000 0.0000 Constraint 275 559 0.8000 1.0000 2.0000 0.0000 Constraint 275 552 0.8000 1.0000 2.0000 0.0000 Constraint 275 543 0.8000 1.0000 2.0000 0.0000 Constraint 275 534 0.8000 1.0000 2.0000 0.0000 Constraint 275 526 0.8000 1.0000 2.0000 0.0000 Constraint 275 518 0.8000 1.0000 2.0000 0.0000 Constraint 275 509 0.8000 1.0000 2.0000 0.0000 Constraint 275 504 0.8000 1.0000 2.0000 0.0000 Constraint 275 497 0.8000 1.0000 2.0000 0.0000 Constraint 275 488 0.8000 1.0000 2.0000 0.0000 Constraint 275 481 0.8000 1.0000 2.0000 0.0000 Constraint 275 472 0.8000 1.0000 2.0000 0.0000 Constraint 275 465 0.8000 1.0000 2.0000 0.0000 Constraint 275 456 0.8000 1.0000 2.0000 0.0000 Constraint 275 443 0.8000 1.0000 2.0000 0.0000 Constraint 275 435 0.8000 1.0000 2.0000 0.0000 Constraint 275 429 0.8000 1.0000 2.0000 0.0000 Constraint 275 418 0.8000 1.0000 2.0000 0.0000 Constraint 275 406 0.8000 1.0000 2.0000 0.0000 Constraint 275 399 0.8000 1.0000 2.0000 0.0000 Constraint 275 388 0.8000 1.0000 2.0000 0.0000 Constraint 275 380 0.8000 1.0000 2.0000 0.0000 Constraint 275 371 0.8000 1.0000 2.0000 0.0000 Constraint 275 363 0.8000 1.0000 2.0000 0.0000 Constraint 275 354 0.8000 1.0000 2.0000 0.0000 Constraint 275 349 0.8000 1.0000 2.0000 0.0000 Constraint 275 342 0.8000 1.0000 2.0000 0.0000 Constraint 275 335 0.8000 1.0000 2.0000 0.0000 Constraint 275 323 0.8000 1.0000 2.0000 0.0000 Constraint 275 315 0.8000 1.0000 2.0000 0.0000 Constraint 275 310 0.8000 1.0000 2.0000 0.0000 Constraint 275 305 0.8000 1.0000 2.0000 0.0000 Constraint 275 298 0.8000 1.0000 2.0000 0.0000 Constraint 275 291 0.8000 1.0000 2.0000 0.0000 Constraint 275 283 0.8000 1.0000 2.0000 0.0000 Constraint 264 692 0.8000 1.0000 2.0000 0.0000 Constraint 264 683 0.8000 1.0000 2.0000 0.0000 Constraint 264 671 0.8000 1.0000 2.0000 0.0000 Constraint 264 659 0.8000 1.0000 2.0000 0.0000 Constraint 264 650 0.8000 1.0000 2.0000 0.0000 Constraint 264 642 0.8000 1.0000 2.0000 0.0000 Constraint 264 633 0.8000 1.0000 2.0000 0.0000 Constraint 264 625 0.8000 1.0000 2.0000 0.0000 Constraint 264 613 0.8000 1.0000 2.0000 0.0000 Constraint 264 603 0.8000 1.0000 2.0000 0.0000 Constraint 264 595 0.8000 1.0000 2.0000 0.0000 Constraint 264 588 0.8000 1.0000 2.0000 0.0000 Constraint 264 581 0.8000 1.0000 2.0000 0.0000 Constraint 264 572 0.8000 1.0000 2.0000 0.0000 Constraint 264 559 0.8000 1.0000 2.0000 0.0000 Constraint 264 552 0.8000 1.0000 2.0000 0.0000 Constraint 264 543 0.8000 1.0000 2.0000 0.0000 Constraint 264 534 0.8000 1.0000 2.0000 0.0000 Constraint 264 526 0.8000 1.0000 2.0000 0.0000 Constraint 264 518 0.8000 1.0000 2.0000 0.0000 Constraint 264 509 0.8000 1.0000 2.0000 0.0000 Constraint 264 504 0.8000 1.0000 2.0000 0.0000 Constraint 264 497 0.8000 1.0000 2.0000 0.0000 Constraint 264 488 0.8000 1.0000 2.0000 0.0000 Constraint 264 481 0.8000 1.0000 2.0000 0.0000 Constraint 264 472 0.8000 1.0000 2.0000 0.0000 Constraint 264 465 0.8000 1.0000 2.0000 0.0000 Constraint 264 456 0.8000 1.0000 2.0000 0.0000 Constraint 264 443 0.8000 1.0000 2.0000 0.0000 Constraint 264 435 0.8000 1.0000 2.0000 0.0000 Constraint 264 429 0.8000 1.0000 2.0000 0.0000 Constraint 264 418 0.8000 1.0000 2.0000 0.0000 Constraint 264 406 0.8000 1.0000 2.0000 0.0000 Constraint 264 399 0.8000 1.0000 2.0000 0.0000 Constraint 264 388 0.8000 1.0000 2.0000 0.0000 Constraint 264 380 0.8000 1.0000 2.0000 0.0000 Constraint 264 371 0.8000 1.0000 2.0000 0.0000 Constraint 264 363 0.8000 1.0000 2.0000 0.0000 Constraint 264 335 0.8000 1.0000 2.0000 0.0000 Constraint 264 323 0.8000 1.0000 2.0000 0.0000 Constraint 264 315 0.8000 1.0000 2.0000 0.0000 Constraint 264 310 0.8000 1.0000 2.0000 0.0000 Constraint 264 305 0.8000 1.0000 2.0000 0.0000 Constraint 264 298 0.8000 1.0000 2.0000 0.0000 Constraint 264 291 0.8000 1.0000 2.0000 0.0000 Constraint 264 283 0.8000 1.0000 2.0000 0.0000 Constraint 264 275 0.8000 1.0000 2.0000 0.0000 Constraint 257 692 0.8000 1.0000 2.0000 0.0000 Constraint 257 683 0.8000 1.0000 2.0000 0.0000 Constraint 257 671 0.8000 1.0000 2.0000 0.0000 Constraint 257 659 0.8000 1.0000 2.0000 0.0000 Constraint 257 650 0.8000 1.0000 2.0000 0.0000 Constraint 257 642 0.8000 1.0000 2.0000 0.0000 Constraint 257 633 0.8000 1.0000 2.0000 0.0000 Constraint 257 625 0.8000 1.0000 2.0000 0.0000 Constraint 257 613 0.8000 1.0000 2.0000 0.0000 Constraint 257 603 0.8000 1.0000 2.0000 0.0000 Constraint 257 595 0.8000 1.0000 2.0000 0.0000 Constraint 257 588 0.8000 1.0000 2.0000 0.0000 Constraint 257 581 0.8000 1.0000 2.0000 0.0000 Constraint 257 572 0.8000 1.0000 2.0000 0.0000 Constraint 257 559 0.8000 1.0000 2.0000 0.0000 Constraint 257 552 0.8000 1.0000 2.0000 0.0000 Constraint 257 543 0.8000 1.0000 2.0000 0.0000 Constraint 257 534 0.8000 1.0000 2.0000 0.0000 Constraint 257 526 0.8000 1.0000 2.0000 0.0000 Constraint 257 518 0.8000 1.0000 2.0000 0.0000 Constraint 257 509 0.8000 1.0000 2.0000 0.0000 Constraint 257 504 0.8000 1.0000 2.0000 0.0000 Constraint 257 497 0.8000 1.0000 2.0000 0.0000 Constraint 257 488 0.8000 1.0000 2.0000 0.0000 Constraint 257 481 0.8000 1.0000 2.0000 0.0000 Constraint 257 472 0.8000 1.0000 2.0000 0.0000 Constraint 257 465 0.8000 1.0000 2.0000 0.0000 Constraint 257 456 0.8000 1.0000 2.0000 0.0000 Constraint 257 443 0.8000 1.0000 2.0000 0.0000 Constraint 257 435 0.8000 1.0000 2.0000 0.0000 Constraint 257 429 0.8000 1.0000 2.0000 0.0000 Constraint 257 418 0.8000 1.0000 2.0000 0.0000 Constraint 257 406 0.8000 1.0000 2.0000 0.0000 Constraint 257 399 0.8000 1.0000 2.0000 0.0000 Constraint 257 388 0.8000 1.0000 2.0000 0.0000 Constraint 257 380 0.8000 1.0000 2.0000 0.0000 Constraint 257 371 0.8000 1.0000 2.0000 0.0000 Constraint 257 315 0.8000 1.0000 2.0000 0.0000 Constraint 257 310 0.8000 1.0000 2.0000 0.0000 Constraint 257 305 0.8000 1.0000 2.0000 0.0000 Constraint 257 298 0.8000 1.0000 2.0000 0.0000 Constraint 257 291 0.8000 1.0000 2.0000 0.0000 Constraint 257 283 0.8000 1.0000 2.0000 0.0000 Constraint 257 275 0.8000 1.0000 2.0000 0.0000 Constraint 257 264 0.8000 1.0000 2.0000 0.0000 Constraint 248 692 0.8000 1.0000 2.0000 0.0000 Constraint 248 683 0.8000 1.0000 2.0000 0.0000 Constraint 248 671 0.8000 1.0000 2.0000 0.0000 Constraint 248 659 0.8000 1.0000 2.0000 0.0000 Constraint 248 650 0.8000 1.0000 2.0000 0.0000 Constraint 248 642 0.8000 1.0000 2.0000 0.0000 Constraint 248 633 0.8000 1.0000 2.0000 0.0000 Constraint 248 625 0.8000 1.0000 2.0000 0.0000 Constraint 248 613 0.8000 1.0000 2.0000 0.0000 Constraint 248 603 0.8000 1.0000 2.0000 0.0000 Constraint 248 595 0.8000 1.0000 2.0000 0.0000 Constraint 248 588 0.8000 1.0000 2.0000 0.0000 Constraint 248 581 0.8000 1.0000 2.0000 0.0000 Constraint 248 572 0.8000 1.0000 2.0000 0.0000 Constraint 248 559 0.8000 1.0000 2.0000 0.0000 Constraint 248 552 0.8000 1.0000 2.0000 0.0000 Constraint 248 543 0.8000 1.0000 2.0000 0.0000 Constraint 248 534 0.8000 1.0000 2.0000 0.0000 Constraint 248 526 0.8000 1.0000 2.0000 0.0000 Constraint 248 518 0.8000 1.0000 2.0000 0.0000 Constraint 248 509 0.8000 1.0000 2.0000 0.0000 Constraint 248 504 0.8000 1.0000 2.0000 0.0000 Constraint 248 497 0.8000 1.0000 2.0000 0.0000 Constraint 248 488 0.8000 1.0000 2.0000 0.0000 Constraint 248 481 0.8000 1.0000 2.0000 0.0000 Constraint 248 472 0.8000 1.0000 2.0000 0.0000 Constraint 248 465 0.8000 1.0000 2.0000 0.0000 Constraint 248 456 0.8000 1.0000 2.0000 0.0000 Constraint 248 443 0.8000 1.0000 2.0000 0.0000 Constraint 248 435 0.8000 1.0000 2.0000 0.0000 Constraint 248 429 0.8000 1.0000 2.0000 0.0000 Constraint 248 418 0.8000 1.0000 2.0000 0.0000 Constraint 248 406 0.8000 1.0000 2.0000 0.0000 Constraint 248 399 0.8000 1.0000 2.0000 0.0000 Constraint 248 388 0.8000 1.0000 2.0000 0.0000 Constraint 248 380 0.8000 1.0000 2.0000 0.0000 Constraint 248 371 0.8000 1.0000 2.0000 0.0000 Constraint 248 363 0.8000 1.0000 2.0000 0.0000 Constraint 248 342 0.8000 1.0000 2.0000 0.0000 Constraint 248 335 0.8000 1.0000 2.0000 0.0000 Constraint 248 323 0.8000 1.0000 2.0000 0.0000 Constraint 248 315 0.8000 1.0000 2.0000 0.0000 Constraint 248 310 0.8000 1.0000 2.0000 0.0000 Constraint 248 305 0.8000 1.0000 2.0000 0.0000 Constraint 248 298 0.8000 1.0000 2.0000 0.0000 Constraint 248 291 0.8000 1.0000 2.0000 0.0000 Constraint 248 283 0.8000 1.0000 2.0000 0.0000 Constraint 248 275 0.8000 1.0000 2.0000 0.0000 Constraint 248 264 0.8000 1.0000 2.0000 0.0000 Constraint 248 257 0.8000 1.0000 2.0000 0.0000 Constraint 241 633 0.8000 1.0000 2.0000 0.0000 Constraint 241 625 0.8000 1.0000 2.0000 0.0000 Constraint 241 603 0.8000 1.0000 2.0000 0.0000 Constraint 241 595 0.8000 1.0000 2.0000 0.0000 Constraint 241 588 0.8000 1.0000 2.0000 0.0000 Constraint 241 581 0.8000 1.0000 2.0000 0.0000 Constraint 241 572 0.8000 1.0000 2.0000 0.0000 Constraint 241 559 0.8000 1.0000 2.0000 0.0000 Constraint 241 552 0.8000 1.0000 2.0000 0.0000 Constraint 241 543 0.8000 1.0000 2.0000 0.0000 Constraint 241 534 0.8000 1.0000 2.0000 0.0000 Constraint 241 526 0.8000 1.0000 2.0000 0.0000 Constraint 241 518 0.8000 1.0000 2.0000 0.0000 Constraint 241 509 0.8000 1.0000 2.0000 0.0000 Constraint 241 504 0.8000 1.0000 2.0000 0.0000 Constraint 241 497 0.8000 1.0000 2.0000 0.0000 Constraint 241 488 0.8000 1.0000 2.0000 0.0000 Constraint 241 481 0.8000 1.0000 2.0000 0.0000 Constraint 241 465 0.8000 1.0000 2.0000 0.0000 Constraint 241 456 0.8000 1.0000 2.0000 0.0000 Constraint 241 443 0.8000 1.0000 2.0000 0.0000 Constraint 241 435 0.8000 1.0000 2.0000 0.0000 Constraint 241 429 0.8000 1.0000 2.0000 0.0000 Constraint 241 418 0.8000 1.0000 2.0000 0.0000 Constraint 241 406 0.8000 1.0000 2.0000 0.0000 Constraint 241 399 0.8000 1.0000 2.0000 0.0000 Constraint 241 388 0.8000 1.0000 2.0000 0.0000 Constraint 241 335 0.8000 1.0000 2.0000 0.0000 Constraint 241 323 0.8000 1.0000 2.0000 0.0000 Constraint 241 315 0.8000 1.0000 2.0000 0.0000 Constraint 241 305 0.8000 1.0000 2.0000 0.0000 Constraint 241 298 0.8000 1.0000 2.0000 0.0000 Constraint 241 291 0.8000 1.0000 2.0000 0.0000 Constraint 241 283 0.8000 1.0000 2.0000 0.0000 Constraint 241 275 0.8000 1.0000 2.0000 0.0000 Constraint 241 264 0.8000 1.0000 2.0000 0.0000 Constraint 241 257 0.8000 1.0000 2.0000 0.0000 Constraint 241 248 0.8000 1.0000 2.0000 0.0000 Constraint 233 671 0.8000 1.0000 2.0000 0.0000 Constraint 233 659 0.8000 1.0000 2.0000 0.0000 Constraint 233 603 0.8000 1.0000 2.0000 0.0000 Constraint 233 588 0.8000 1.0000 2.0000 0.0000 Constraint 233 581 0.8000 1.0000 2.0000 0.0000 Constraint 233 572 0.8000 1.0000 2.0000 0.0000 Constraint 233 559 0.8000 1.0000 2.0000 0.0000 Constraint 233 552 0.8000 1.0000 2.0000 0.0000 Constraint 233 543 0.8000 1.0000 2.0000 0.0000 Constraint 233 518 0.8000 1.0000 2.0000 0.0000 Constraint 233 509 0.8000 1.0000 2.0000 0.0000 Constraint 233 504 0.8000 1.0000 2.0000 0.0000 Constraint 233 497 0.8000 1.0000 2.0000 0.0000 Constraint 233 488 0.8000 1.0000 2.0000 0.0000 Constraint 233 481 0.8000 1.0000 2.0000 0.0000 Constraint 233 472 0.8000 1.0000 2.0000 0.0000 Constraint 233 465 0.8000 1.0000 2.0000 0.0000 Constraint 233 443 0.8000 1.0000 2.0000 0.0000 Constraint 233 435 0.8000 1.0000 2.0000 0.0000 Constraint 233 429 0.8000 1.0000 2.0000 0.0000 Constraint 233 418 0.8000 1.0000 2.0000 0.0000 Constraint 233 406 0.8000 1.0000 2.0000 0.0000 Constraint 233 399 0.8000 1.0000 2.0000 0.0000 Constraint 233 388 0.8000 1.0000 2.0000 0.0000 Constraint 233 323 0.8000 1.0000 2.0000 0.0000 Constraint 233 315 0.8000 1.0000 2.0000 0.0000 Constraint 233 310 0.8000 1.0000 2.0000 0.0000 Constraint 233 298 0.8000 1.0000 2.0000 0.0000 Constraint 233 291 0.8000 1.0000 2.0000 0.0000 Constraint 233 283 0.8000 1.0000 2.0000 0.0000 Constraint 233 275 0.8000 1.0000 2.0000 0.0000 Constraint 233 264 0.8000 1.0000 2.0000 0.0000 Constraint 233 257 0.8000 1.0000 2.0000 0.0000 Constraint 233 248 0.8000 1.0000 2.0000 0.0000 Constraint 233 241 0.8000 1.0000 2.0000 0.0000 Constraint 221 692 0.8000 1.0000 2.0000 0.0000 Constraint 221 603 0.8000 1.0000 2.0000 0.0000 Constraint 221 595 0.8000 1.0000 2.0000 0.0000 Constraint 221 588 0.8000 1.0000 2.0000 0.0000 Constraint 221 581 0.8000 1.0000 2.0000 0.0000 Constraint 221 572 0.8000 1.0000 2.0000 0.0000 Constraint 221 559 0.8000 1.0000 2.0000 0.0000 Constraint 221 552 0.8000 1.0000 2.0000 0.0000 Constraint 221 543 0.8000 1.0000 2.0000 0.0000 Constraint 221 534 0.8000 1.0000 2.0000 0.0000 Constraint 221 526 0.8000 1.0000 2.0000 0.0000 Constraint 221 518 0.8000 1.0000 2.0000 0.0000 Constraint 221 509 0.8000 1.0000 2.0000 0.0000 Constraint 221 488 0.8000 1.0000 2.0000 0.0000 Constraint 221 481 0.8000 1.0000 2.0000 0.0000 Constraint 221 443 0.8000 1.0000 2.0000 0.0000 Constraint 221 429 0.8000 1.0000 2.0000 0.0000 Constraint 221 418 0.8000 1.0000 2.0000 0.0000 Constraint 221 406 0.8000 1.0000 2.0000 0.0000 Constraint 221 399 0.8000 1.0000 2.0000 0.0000 Constraint 221 388 0.8000 1.0000 2.0000 0.0000 Constraint 221 349 0.8000 1.0000 2.0000 0.0000 Constraint 221 342 0.8000 1.0000 2.0000 0.0000 Constraint 221 335 0.8000 1.0000 2.0000 0.0000 Constraint 221 323 0.8000 1.0000 2.0000 0.0000 Constraint 221 315 0.8000 1.0000 2.0000 0.0000 Constraint 221 310 0.8000 1.0000 2.0000 0.0000 Constraint 221 305 0.8000 1.0000 2.0000 0.0000 Constraint 221 298 0.8000 1.0000 2.0000 0.0000 Constraint 221 291 0.8000 1.0000 2.0000 0.0000 Constraint 221 283 0.8000 1.0000 2.0000 0.0000 Constraint 221 275 0.8000 1.0000 2.0000 0.0000 Constraint 221 264 0.8000 1.0000 2.0000 0.0000 Constraint 221 257 0.8000 1.0000 2.0000 0.0000 Constraint 221 248 0.8000 1.0000 2.0000 0.0000 Constraint 221 241 0.8000 1.0000 2.0000 0.0000 Constraint 221 233 0.8000 1.0000 2.0000 0.0000 Constraint 213 692 0.8000 1.0000 2.0000 0.0000 Constraint 213 671 0.8000 1.0000 2.0000 0.0000 Constraint 213 659 0.8000 1.0000 2.0000 0.0000 Constraint 213 650 0.8000 1.0000 2.0000 0.0000 Constraint 213 642 0.8000 1.0000 2.0000 0.0000 Constraint 213 633 0.8000 1.0000 2.0000 0.0000 Constraint 213 625 0.8000 1.0000 2.0000 0.0000 Constraint 213 613 0.8000 1.0000 2.0000 0.0000 Constraint 213 603 0.8000 1.0000 2.0000 0.0000 Constraint 213 595 0.8000 1.0000 2.0000 0.0000 Constraint 213 588 0.8000 1.0000 2.0000 0.0000 Constraint 213 581 0.8000 1.0000 2.0000 0.0000 Constraint 213 572 0.8000 1.0000 2.0000 0.0000 Constraint 213 559 0.8000 1.0000 2.0000 0.0000 Constraint 213 552 0.8000 1.0000 2.0000 0.0000 Constraint 213 543 0.8000 1.0000 2.0000 0.0000 Constraint 213 534 0.8000 1.0000 2.0000 0.0000 Constraint 213 509 0.8000 1.0000 2.0000 0.0000 Constraint 213 429 0.8000 1.0000 2.0000 0.0000 Constraint 213 418 0.8000 1.0000 2.0000 0.0000 Constraint 213 406 0.8000 1.0000 2.0000 0.0000 Constraint 213 363 0.8000 1.0000 2.0000 0.0000 Constraint 213 354 0.8000 1.0000 2.0000 0.0000 Constraint 213 349 0.8000 1.0000 2.0000 0.0000 Constraint 213 342 0.8000 1.0000 2.0000 0.0000 Constraint 213 335 0.8000 1.0000 2.0000 0.0000 Constraint 213 323 0.8000 1.0000 2.0000 0.0000 Constraint 213 315 0.8000 1.0000 2.0000 0.0000 Constraint 213 310 0.8000 1.0000 2.0000 0.0000 Constraint 213 305 0.8000 1.0000 2.0000 0.0000 Constraint 213 298 0.8000 1.0000 2.0000 0.0000 Constraint 213 291 0.8000 1.0000 2.0000 0.0000 Constraint 213 283 0.8000 1.0000 2.0000 0.0000 Constraint 213 275 0.8000 1.0000 2.0000 0.0000 Constraint 213 264 0.8000 1.0000 2.0000 0.0000 Constraint 213 257 0.8000 1.0000 2.0000 0.0000 Constraint 213 248 0.8000 1.0000 2.0000 0.0000 Constraint 213 241 0.8000 1.0000 2.0000 0.0000 Constraint 213 233 0.8000 1.0000 2.0000 0.0000 Constraint 213 221 0.8000 1.0000 2.0000 0.0000 Constraint 207 692 0.8000 1.0000 2.0000 0.0000 Constraint 207 683 0.8000 1.0000 2.0000 0.0000 Constraint 207 603 0.8000 1.0000 2.0000 0.0000 Constraint 207 595 0.8000 1.0000 2.0000 0.0000 Constraint 207 588 0.8000 1.0000 2.0000 0.0000 Constraint 207 581 0.8000 1.0000 2.0000 0.0000 Constraint 207 572 0.8000 1.0000 2.0000 0.0000 Constraint 207 559 0.8000 1.0000 2.0000 0.0000 Constraint 207 552 0.8000 1.0000 2.0000 0.0000 Constraint 207 526 0.8000 1.0000 2.0000 0.0000 Constraint 207 518 0.8000 1.0000 2.0000 0.0000 Constraint 207 509 0.8000 1.0000 2.0000 0.0000 Constraint 207 504 0.8000 1.0000 2.0000 0.0000 Constraint 207 488 0.8000 1.0000 2.0000 0.0000 Constraint 207 481 0.8000 1.0000 2.0000 0.0000 Constraint 207 418 0.8000 1.0000 2.0000 0.0000 Constraint 207 406 0.8000 1.0000 2.0000 0.0000 Constraint 207 399 0.8000 1.0000 2.0000 0.0000 Constraint 207 363 0.8000 1.0000 2.0000 0.0000 Constraint 207 354 0.8000 1.0000 2.0000 0.0000 Constraint 207 349 0.8000 1.0000 2.0000 0.0000 Constraint 207 342 0.8000 1.0000 2.0000 0.0000 Constraint 207 335 0.8000 1.0000 2.0000 0.0000 Constraint 207 323 0.8000 1.0000 2.0000 0.0000 Constraint 207 315 0.8000 1.0000 2.0000 0.0000 Constraint 207 310 0.8000 1.0000 2.0000 0.0000 Constraint 207 305 0.8000 1.0000 2.0000 0.0000 Constraint 207 298 0.8000 1.0000 2.0000 0.0000 Constraint 207 291 0.8000 1.0000 2.0000 0.0000 Constraint 207 283 0.8000 1.0000 2.0000 0.0000 Constraint 207 275 0.8000 1.0000 2.0000 0.0000 Constraint 207 264 0.8000 1.0000 2.0000 0.0000 Constraint 207 257 0.8000 1.0000 2.0000 0.0000 Constraint 207 248 0.8000 1.0000 2.0000 0.0000 Constraint 207 241 0.8000 1.0000 2.0000 0.0000 Constraint 207 233 0.8000 1.0000 2.0000 0.0000 Constraint 207 221 0.8000 1.0000 2.0000 0.0000 Constraint 207 213 0.8000 1.0000 2.0000 0.0000 Constraint 200 692 0.8000 1.0000 2.0000 0.0000 Constraint 200 683 0.8000 1.0000 2.0000 0.0000 Constraint 200 659 0.8000 1.0000 2.0000 0.0000 Constraint 200 613 0.8000 1.0000 2.0000 0.0000 Constraint 200 603 0.8000 1.0000 2.0000 0.0000 Constraint 200 595 0.8000 1.0000 2.0000 0.0000 Constraint 200 588 0.8000 1.0000 2.0000 0.0000 Constraint 200 581 0.8000 1.0000 2.0000 0.0000 Constraint 200 572 0.8000 1.0000 2.0000 0.0000 Constraint 200 559 0.8000 1.0000 2.0000 0.0000 Constraint 200 552 0.8000 1.0000 2.0000 0.0000 Constraint 200 543 0.8000 1.0000 2.0000 0.0000 Constraint 200 534 0.8000 1.0000 2.0000 0.0000 Constraint 200 526 0.8000 1.0000 2.0000 0.0000 Constraint 200 518 0.8000 1.0000 2.0000 0.0000 Constraint 200 509 0.8000 1.0000 2.0000 0.0000 Constraint 200 504 0.8000 1.0000 2.0000 0.0000 Constraint 200 497 0.8000 1.0000 2.0000 0.0000 Constraint 200 488 0.8000 1.0000 2.0000 0.0000 Constraint 200 481 0.8000 1.0000 2.0000 0.0000 Constraint 200 418 0.8000 1.0000 2.0000 0.0000 Constraint 200 406 0.8000 1.0000 2.0000 0.0000 Constraint 200 399 0.8000 1.0000 2.0000 0.0000 Constraint 200 363 0.8000 1.0000 2.0000 0.0000 Constraint 200 354 0.8000 1.0000 2.0000 0.0000 Constraint 200 349 0.8000 1.0000 2.0000 0.0000 Constraint 200 342 0.8000 1.0000 2.0000 0.0000 Constraint 200 335 0.8000 1.0000 2.0000 0.0000 Constraint 200 323 0.8000 1.0000 2.0000 0.0000 Constraint 200 315 0.8000 1.0000 2.0000 0.0000 Constraint 200 310 0.8000 1.0000 2.0000 0.0000 Constraint 200 305 0.8000 1.0000 2.0000 0.0000 Constraint 200 298 0.8000 1.0000 2.0000 0.0000 Constraint 200 291 0.8000 1.0000 2.0000 0.0000 Constraint 200 283 0.8000 1.0000 2.0000 0.0000 Constraint 200 275 0.8000 1.0000 2.0000 0.0000 Constraint 200 264 0.8000 1.0000 2.0000 0.0000 Constraint 200 257 0.8000 1.0000 2.0000 0.0000 Constraint 200 248 0.8000 1.0000 2.0000 0.0000 Constraint 200 241 0.8000 1.0000 2.0000 0.0000 Constraint 200 233 0.8000 1.0000 2.0000 0.0000 Constraint 200 221 0.8000 1.0000 2.0000 0.0000 Constraint 200 213 0.8000 1.0000 2.0000 0.0000 Constraint 200 207 0.8000 1.0000 2.0000 0.0000 Constraint 194 692 0.8000 1.0000 2.0000 0.0000 Constraint 194 683 0.8000 1.0000 2.0000 0.0000 Constraint 194 659 0.8000 1.0000 2.0000 0.0000 Constraint 194 613 0.8000 1.0000 2.0000 0.0000 Constraint 194 603 0.8000 1.0000 2.0000 0.0000 Constraint 194 595 0.8000 1.0000 2.0000 0.0000 Constraint 194 588 0.8000 1.0000 2.0000 0.0000 Constraint 194 581 0.8000 1.0000 2.0000 0.0000 Constraint 194 572 0.8000 1.0000 2.0000 0.0000 Constraint 194 559 0.8000 1.0000 2.0000 0.0000 Constraint 194 552 0.8000 1.0000 2.0000 0.0000 Constraint 194 543 0.8000 1.0000 2.0000 0.0000 Constraint 194 534 0.8000 1.0000 2.0000 0.0000 Constraint 194 526 0.8000 1.0000 2.0000 0.0000 Constraint 194 518 0.8000 1.0000 2.0000 0.0000 Constraint 194 509 0.8000 1.0000 2.0000 0.0000 Constraint 194 504 0.8000 1.0000 2.0000 0.0000 Constraint 194 418 0.8000 1.0000 2.0000 0.0000 Constraint 194 406 0.8000 1.0000 2.0000 0.0000 Constraint 194 399 0.8000 1.0000 2.0000 0.0000 Constraint 194 363 0.8000 1.0000 2.0000 0.0000 Constraint 194 354 0.8000 1.0000 2.0000 0.0000 Constraint 194 349 0.8000 1.0000 2.0000 0.0000 Constraint 194 342 0.8000 1.0000 2.0000 0.0000 Constraint 194 335 0.8000 1.0000 2.0000 0.0000 Constraint 194 323 0.8000 1.0000 2.0000 0.0000 Constraint 194 315 0.8000 1.0000 2.0000 0.0000 Constraint 194 310 0.8000 1.0000 2.0000 0.0000 Constraint 194 305 0.8000 1.0000 2.0000 0.0000 Constraint 194 298 0.8000 1.0000 2.0000 0.0000 Constraint 194 291 0.8000 1.0000 2.0000 0.0000 Constraint 194 283 0.8000 1.0000 2.0000 0.0000 Constraint 194 275 0.8000 1.0000 2.0000 0.0000 Constraint 194 264 0.8000 1.0000 2.0000 0.0000 Constraint 194 257 0.8000 1.0000 2.0000 0.0000 Constraint 194 248 0.8000 1.0000 2.0000 0.0000 Constraint 194 241 0.8000 1.0000 2.0000 0.0000 Constraint 194 233 0.8000 1.0000 2.0000 0.0000 Constraint 194 221 0.8000 1.0000 2.0000 0.0000 Constraint 194 213 0.8000 1.0000 2.0000 0.0000 Constraint 194 207 0.8000 1.0000 2.0000 0.0000 Constraint 194 200 0.8000 1.0000 2.0000 0.0000 Constraint 182 683 0.8000 1.0000 2.0000 0.0000 Constraint 182 671 0.8000 1.0000 2.0000 0.0000 Constraint 182 659 0.8000 1.0000 2.0000 0.0000 Constraint 182 613 0.8000 1.0000 2.0000 0.0000 Constraint 182 603 0.8000 1.0000 2.0000 0.0000 Constraint 182 595 0.8000 1.0000 2.0000 0.0000 Constraint 182 588 0.8000 1.0000 2.0000 0.0000 Constraint 182 581 0.8000 1.0000 2.0000 0.0000 Constraint 182 572 0.8000 1.0000 2.0000 0.0000 Constraint 182 559 0.8000 1.0000 2.0000 0.0000 Constraint 182 552 0.8000 1.0000 2.0000 0.0000 Constraint 182 543 0.8000 1.0000 2.0000 0.0000 Constraint 182 526 0.8000 1.0000 2.0000 0.0000 Constraint 182 518 0.8000 1.0000 2.0000 0.0000 Constraint 182 509 0.8000 1.0000 2.0000 0.0000 Constraint 182 504 0.8000 1.0000 2.0000 0.0000 Constraint 182 488 0.8000 1.0000 2.0000 0.0000 Constraint 182 429 0.8000 1.0000 2.0000 0.0000 Constraint 182 418 0.8000 1.0000 2.0000 0.0000 Constraint 182 406 0.8000 1.0000 2.0000 0.0000 Constraint 182 399 0.8000 1.0000 2.0000 0.0000 Constraint 182 380 0.8000 1.0000 2.0000 0.0000 Constraint 182 363 0.8000 1.0000 2.0000 0.0000 Constraint 182 354 0.8000 1.0000 2.0000 0.0000 Constraint 182 349 0.8000 1.0000 2.0000 0.0000 Constraint 182 342 0.8000 1.0000 2.0000 0.0000 Constraint 182 335 0.8000 1.0000 2.0000 0.0000 Constraint 182 323 0.8000 1.0000 2.0000 0.0000 Constraint 182 315 0.8000 1.0000 2.0000 0.0000 Constraint 182 310 0.8000 1.0000 2.0000 0.0000 Constraint 182 305 0.8000 1.0000 2.0000 0.0000 Constraint 182 298 0.8000 1.0000 2.0000 0.0000 Constraint 182 291 0.8000 1.0000 2.0000 0.0000 Constraint 182 283 0.8000 1.0000 2.0000 0.0000 Constraint 182 275 0.8000 1.0000 2.0000 0.0000 Constraint 182 264 0.8000 1.0000 2.0000 0.0000 Constraint 182 257 0.8000 1.0000 2.0000 0.0000 Constraint 182 248 0.8000 1.0000 2.0000 0.0000 Constraint 182 241 0.8000 1.0000 2.0000 0.0000 Constraint 182 233 0.8000 1.0000 2.0000 0.0000 Constraint 182 221 0.8000 1.0000 2.0000 0.0000 Constraint 182 213 0.8000 1.0000 2.0000 0.0000 Constraint 182 207 0.8000 1.0000 2.0000 0.0000 Constraint 182 200 0.8000 1.0000 2.0000 0.0000 Constraint 182 194 0.8000 1.0000 2.0000 0.0000 Constraint 173 692 0.8000 1.0000 2.0000 0.0000 Constraint 173 683 0.8000 1.0000 2.0000 0.0000 Constraint 173 671 0.8000 1.0000 2.0000 0.0000 Constraint 173 659 0.8000 1.0000 2.0000 0.0000 Constraint 173 650 0.8000 1.0000 2.0000 0.0000 Constraint 173 633 0.8000 1.0000 2.0000 0.0000 Constraint 173 613 0.8000 1.0000 2.0000 0.0000 Constraint 173 603 0.8000 1.0000 2.0000 0.0000 Constraint 173 595 0.8000 1.0000 2.0000 0.0000 Constraint 173 588 0.8000 1.0000 2.0000 0.0000 Constraint 173 581 0.8000 1.0000 2.0000 0.0000 Constraint 173 572 0.8000 1.0000 2.0000 0.0000 Constraint 173 559 0.8000 1.0000 2.0000 0.0000 Constraint 173 552 0.8000 1.0000 2.0000 0.0000 Constraint 173 543 0.8000 1.0000 2.0000 0.0000 Constraint 173 534 0.8000 1.0000 2.0000 0.0000 Constraint 173 526 0.8000 1.0000 2.0000 0.0000 Constraint 173 518 0.8000 1.0000 2.0000 0.0000 Constraint 173 509 0.8000 1.0000 2.0000 0.0000 Constraint 173 504 0.8000 1.0000 2.0000 0.0000 Constraint 173 429 0.8000 1.0000 2.0000 0.0000 Constraint 173 418 0.8000 1.0000 2.0000 0.0000 Constraint 173 406 0.8000 1.0000 2.0000 0.0000 Constraint 173 399 0.8000 1.0000 2.0000 0.0000 Constraint 173 388 0.8000 1.0000 2.0000 0.0000 Constraint 173 380 0.8000 1.0000 2.0000 0.0000 Constraint 173 363 0.8000 1.0000 2.0000 0.0000 Constraint 173 354 0.8000 1.0000 2.0000 0.0000 Constraint 173 349 0.8000 1.0000 2.0000 0.0000 Constraint 173 342 0.8000 1.0000 2.0000 0.0000 Constraint 173 335 0.8000 1.0000 2.0000 0.0000 Constraint 173 323 0.8000 1.0000 2.0000 0.0000 Constraint 173 315 0.8000 1.0000 2.0000 0.0000 Constraint 173 310 0.8000 1.0000 2.0000 0.0000 Constraint 173 305 0.8000 1.0000 2.0000 0.0000 Constraint 173 298 0.8000 1.0000 2.0000 0.0000 Constraint 173 283 0.8000 1.0000 2.0000 0.0000 Constraint 173 275 0.8000 1.0000 2.0000 0.0000 Constraint 173 257 0.8000 1.0000 2.0000 0.0000 Constraint 173 248 0.8000 1.0000 2.0000 0.0000 Constraint 173 241 0.8000 1.0000 2.0000 0.0000 Constraint 173 233 0.8000 1.0000 2.0000 0.0000 Constraint 173 221 0.8000 1.0000 2.0000 0.0000 Constraint 173 213 0.8000 1.0000 2.0000 0.0000 Constraint 173 207 0.8000 1.0000 2.0000 0.0000 Constraint 173 200 0.8000 1.0000 2.0000 0.0000 Constraint 173 194 0.8000 1.0000 2.0000 0.0000 Constraint 173 182 0.8000 1.0000 2.0000 0.0000 Constraint 168 692 0.8000 1.0000 2.0000 0.0000 Constraint 168 683 0.8000 1.0000 2.0000 0.0000 Constraint 168 671 0.8000 1.0000 2.0000 0.0000 Constraint 168 659 0.8000 1.0000 2.0000 0.0000 Constraint 168 613 0.8000 1.0000 2.0000 0.0000 Constraint 168 603 0.8000 1.0000 2.0000 0.0000 Constraint 168 595 0.8000 1.0000 2.0000 0.0000 Constraint 168 588 0.8000 1.0000 2.0000 0.0000 Constraint 168 581 0.8000 1.0000 2.0000 0.0000 Constraint 168 572 0.8000 1.0000 2.0000 0.0000 Constraint 168 559 0.8000 1.0000 2.0000 0.0000 Constraint 168 552 0.8000 1.0000 2.0000 0.0000 Constraint 168 543 0.8000 1.0000 2.0000 0.0000 Constraint 168 534 0.8000 1.0000 2.0000 0.0000 Constraint 168 526 0.8000 1.0000 2.0000 0.0000 Constraint 168 518 0.8000 1.0000 2.0000 0.0000 Constraint 168 509 0.8000 1.0000 2.0000 0.0000 Constraint 168 429 0.8000 1.0000 2.0000 0.0000 Constraint 168 418 0.8000 1.0000 2.0000 0.0000 Constraint 168 406 0.8000 1.0000 2.0000 0.0000 Constraint 168 399 0.8000 1.0000 2.0000 0.0000 Constraint 168 388 0.8000 1.0000 2.0000 0.0000 Constraint 168 342 0.8000 1.0000 2.0000 0.0000 Constraint 168 335 0.8000 1.0000 2.0000 0.0000 Constraint 168 323 0.8000 1.0000 2.0000 0.0000 Constraint 168 315 0.8000 1.0000 2.0000 0.0000 Constraint 168 310 0.8000 1.0000 2.0000 0.0000 Constraint 168 305 0.8000 1.0000 2.0000 0.0000 Constraint 168 298 0.8000 1.0000 2.0000 0.0000 Constraint 168 291 0.8000 1.0000 2.0000 0.0000 Constraint 168 283 0.8000 1.0000 2.0000 0.0000 Constraint 168 275 0.8000 1.0000 2.0000 0.0000 Constraint 168 264 0.8000 1.0000 2.0000 0.0000 Constraint 168 248 0.8000 1.0000 2.0000 0.0000 Constraint 168 233 0.8000 1.0000 2.0000 0.0000 Constraint 168 221 0.8000 1.0000 2.0000 0.0000 Constraint 168 213 0.8000 1.0000 2.0000 0.0000 Constraint 168 207 0.8000 1.0000 2.0000 0.0000 Constraint 168 200 0.8000 1.0000 2.0000 0.0000 Constraint 168 194 0.8000 1.0000 2.0000 0.0000 Constraint 168 182 0.8000 1.0000 2.0000 0.0000 Constraint 168 173 0.8000 1.0000 2.0000 0.0000 Constraint 148 692 0.8000 1.0000 2.0000 0.0000 Constraint 148 683 0.8000 1.0000 2.0000 0.0000 Constraint 148 671 0.8000 1.0000 2.0000 0.0000 Constraint 148 659 0.8000 1.0000 2.0000 0.0000 Constraint 148 650 0.8000 1.0000 2.0000 0.0000 Constraint 148 642 0.8000 1.0000 2.0000 0.0000 Constraint 148 633 0.8000 1.0000 2.0000 0.0000 Constraint 148 625 0.8000 1.0000 2.0000 0.0000 Constraint 148 613 0.8000 1.0000 2.0000 0.0000 Constraint 148 603 0.8000 1.0000 2.0000 0.0000 Constraint 148 595 0.8000 1.0000 2.0000 0.0000 Constraint 148 588 0.8000 1.0000 2.0000 0.0000 Constraint 148 572 0.8000 1.0000 2.0000 0.0000 Constraint 148 559 0.8000 1.0000 2.0000 0.0000 Constraint 148 552 0.8000 1.0000 2.0000 0.0000 Constraint 148 543 0.8000 1.0000 2.0000 0.0000 Constraint 148 534 0.8000 1.0000 2.0000 0.0000 Constraint 148 518 0.8000 1.0000 2.0000 0.0000 Constraint 148 509 0.8000 1.0000 2.0000 0.0000 Constraint 148 488 0.8000 1.0000 2.0000 0.0000 Constraint 148 465 0.8000 1.0000 2.0000 0.0000 Constraint 148 443 0.8000 1.0000 2.0000 0.0000 Constraint 148 429 0.8000 1.0000 2.0000 0.0000 Constraint 148 418 0.8000 1.0000 2.0000 0.0000 Constraint 148 406 0.8000 1.0000 2.0000 0.0000 Constraint 148 388 0.8000 1.0000 2.0000 0.0000 Constraint 148 363 0.8000 1.0000 2.0000 0.0000 Constraint 148 354 0.8000 1.0000 2.0000 0.0000 Constraint 148 349 0.8000 1.0000 2.0000 0.0000 Constraint 148 342 0.8000 1.0000 2.0000 0.0000 Constraint 148 335 0.8000 1.0000 2.0000 0.0000 Constraint 148 323 0.8000 1.0000 2.0000 0.0000 Constraint 148 315 0.8000 1.0000 2.0000 0.0000 Constraint 148 310 0.8000 1.0000 2.0000 0.0000 Constraint 148 264 0.8000 1.0000 2.0000 0.0000 Constraint 148 200 0.8000 1.0000 2.0000 0.0000 Constraint 148 194 0.8000 1.0000 2.0000 0.0000 Constraint 148 182 0.8000 1.0000 2.0000 0.0000 Constraint 148 173 0.8000 1.0000 2.0000 0.0000 Constraint 148 168 0.8000 1.0000 2.0000 0.0000 Constraint 142 692 0.8000 1.0000 2.0000 0.0000 Constraint 142 683 0.8000 1.0000 2.0000 0.0000 Constraint 142 671 0.8000 1.0000 2.0000 0.0000 Constraint 142 659 0.8000 1.0000 2.0000 0.0000 Constraint 142 650 0.8000 1.0000 2.0000 0.0000 Constraint 142 642 0.8000 1.0000 2.0000 0.0000 Constraint 142 633 0.8000 1.0000 2.0000 0.0000 Constraint 142 625 0.8000 1.0000 2.0000 0.0000 Constraint 142 613 0.8000 1.0000 2.0000 0.0000 Constraint 142 603 0.8000 1.0000 2.0000 0.0000 Constraint 142 595 0.8000 1.0000 2.0000 0.0000 Constraint 142 588 0.8000 1.0000 2.0000 0.0000 Constraint 142 581 0.8000 1.0000 2.0000 0.0000 Constraint 142 572 0.8000 1.0000 2.0000 0.0000 Constraint 142 559 0.8000 1.0000 2.0000 0.0000 Constraint 142 552 0.8000 1.0000 2.0000 0.0000 Constraint 142 543 0.8000 1.0000 2.0000 0.0000 Constraint 142 534 0.8000 1.0000 2.0000 0.0000 Constraint 142 526 0.8000 1.0000 2.0000 0.0000 Constraint 142 518 0.8000 1.0000 2.0000 0.0000 Constraint 142 509 0.8000 1.0000 2.0000 0.0000 Constraint 142 497 0.8000 1.0000 2.0000 0.0000 Constraint 142 488 0.8000 1.0000 2.0000 0.0000 Constraint 142 481 0.8000 1.0000 2.0000 0.0000 Constraint 142 465 0.8000 1.0000 2.0000 0.0000 Constraint 142 443 0.8000 1.0000 2.0000 0.0000 Constraint 142 435 0.8000 1.0000 2.0000 0.0000 Constraint 142 429 0.8000 1.0000 2.0000 0.0000 Constraint 142 418 0.8000 1.0000 2.0000 0.0000 Constraint 142 406 0.8000 1.0000 2.0000 0.0000 Constraint 142 399 0.8000 1.0000 2.0000 0.0000 Constraint 142 388 0.8000 1.0000 2.0000 0.0000 Constraint 142 380 0.8000 1.0000 2.0000 0.0000 Constraint 142 371 0.8000 1.0000 2.0000 0.0000 Constraint 142 363 0.8000 1.0000 2.0000 0.0000 Constraint 142 349 0.8000 1.0000 2.0000 0.0000 Constraint 142 342 0.8000 1.0000 2.0000 0.0000 Constraint 142 335 0.8000 1.0000 2.0000 0.0000 Constraint 142 323 0.8000 1.0000 2.0000 0.0000 Constraint 142 315 0.8000 1.0000 2.0000 0.0000 Constraint 142 310 0.8000 1.0000 2.0000 0.0000 Constraint 142 305 0.8000 1.0000 2.0000 0.0000 Constraint 142 298 0.8000 1.0000 2.0000 0.0000 Constraint 142 291 0.8000 1.0000 2.0000 0.0000 Constraint 142 207 0.8000 1.0000 2.0000 0.0000 Constraint 142 194 0.8000 1.0000 2.0000 0.0000 Constraint 142 182 0.8000 1.0000 2.0000 0.0000 Constraint 142 173 0.8000 1.0000 2.0000 0.0000 Constraint 142 168 0.8000 1.0000 2.0000 0.0000 Constraint 142 148 0.8000 1.0000 2.0000 0.0000 Constraint 134 692 0.8000 1.0000 2.0000 0.0000 Constraint 134 683 0.8000 1.0000 2.0000 0.0000 Constraint 134 671 0.8000 1.0000 2.0000 0.0000 Constraint 134 659 0.8000 1.0000 2.0000 0.0000 Constraint 134 650 0.8000 1.0000 2.0000 0.0000 Constraint 134 642 0.8000 1.0000 2.0000 0.0000 Constraint 134 633 0.8000 1.0000 2.0000 0.0000 Constraint 134 625 0.8000 1.0000 2.0000 0.0000 Constraint 134 613 0.8000 1.0000 2.0000 0.0000 Constraint 134 588 0.8000 1.0000 2.0000 0.0000 Constraint 134 581 0.8000 1.0000 2.0000 0.0000 Constraint 134 572 0.8000 1.0000 2.0000 0.0000 Constraint 134 559 0.8000 1.0000 2.0000 0.0000 Constraint 134 552 0.8000 1.0000 2.0000 0.0000 Constraint 134 543 0.8000 1.0000 2.0000 0.0000 Constraint 134 534 0.8000 1.0000 2.0000 0.0000 Constraint 134 518 0.8000 1.0000 2.0000 0.0000 Constraint 134 509 0.8000 1.0000 2.0000 0.0000 Constraint 134 481 0.8000 1.0000 2.0000 0.0000 Constraint 134 465 0.8000 1.0000 2.0000 0.0000 Constraint 134 443 0.8000 1.0000 2.0000 0.0000 Constraint 134 435 0.8000 1.0000 2.0000 0.0000 Constraint 134 429 0.8000 1.0000 2.0000 0.0000 Constraint 134 418 0.8000 1.0000 2.0000 0.0000 Constraint 134 406 0.8000 1.0000 2.0000 0.0000 Constraint 134 399 0.8000 1.0000 2.0000 0.0000 Constraint 134 388 0.8000 1.0000 2.0000 0.0000 Constraint 134 371 0.8000 1.0000 2.0000 0.0000 Constraint 134 363 0.8000 1.0000 2.0000 0.0000 Constraint 134 323 0.8000 1.0000 2.0000 0.0000 Constraint 134 207 0.8000 1.0000 2.0000 0.0000 Constraint 134 182 0.8000 1.0000 2.0000 0.0000 Constraint 134 173 0.8000 1.0000 2.0000 0.0000 Constraint 134 168 0.8000 1.0000 2.0000 0.0000 Constraint 134 148 0.8000 1.0000 2.0000 0.0000 Constraint 134 142 0.8000 1.0000 2.0000 0.0000 Constraint 122 692 0.8000 1.0000 2.0000 0.0000 Constraint 122 683 0.8000 1.0000 2.0000 0.0000 Constraint 122 671 0.8000 1.0000 2.0000 0.0000 Constraint 122 659 0.8000 1.0000 2.0000 0.0000 Constraint 122 650 0.8000 1.0000 2.0000 0.0000 Constraint 122 642 0.8000 1.0000 2.0000 0.0000 Constraint 122 633 0.8000 1.0000 2.0000 0.0000 Constraint 122 625 0.8000 1.0000 2.0000 0.0000 Constraint 122 613 0.8000 1.0000 2.0000 0.0000 Constraint 122 572 0.8000 1.0000 2.0000 0.0000 Constraint 122 543 0.8000 1.0000 2.0000 0.0000 Constraint 122 518 0.8000 1.0000 2.0000 0.0000 Constraint 122 472 0.8000 1.0000 2.0000 0.0000 Constraint 122 465 0.8000 1.0000 2.0000 0.0000 Constraint 122 456 0.8000 1.0000 2.0000 0.0000 Constraint 122 443 0.8000 1.0000 2.0000 0.0000 Constraint 122 435 0.8000 1.0000 2.0000 0.0000 Constraint 122 429 0.8000 1.0000 2.0000 0.0000 Constraint 122 418 0.8000 1.0000 2.0000 0.0000 Constraint 122 388 0.8000 1.0000 2.0000 0.0000 Constraint 122 371 0.8000 1.0000 2.0000 0.0000 Constraint 122 363 0.8000 1.0000 2.0000 0.0000 Constraint 122 354 0.8000 1.0000 2.0000 0.0000 Constraint 122 349 0.8000 1.0000 2.0000 0.0000 Constraint 122 323 0.8000 1.0000 2.0000 0.0000 Constraint 122 315 0.8000 1.0000 2.0000 0.0000 Constraint 122 283 0.8000 1.0000 2.0000 0.0000 Constraint 122 213 0.8000 1.0000 2.0000 0.0000 Constraint 122 207 0.8000 1.0000 2.0000 0.0000 Constraint 122 168 0.8000 1.0000 2.0000 0.0000 Constraint 122 148 0.8000 1.0000 2.0000 0.0000 Constraint 122 142 0.8000 1.0000 2.0000 0.0000 Constraint 122 134 0.8000 1.0000 2.0000 0.0000 Constraint 114 692 0.8000 1.0000 2.0000 0.0000 Constraint 114 683 0.8000 1.0000 2.0000 0.0000 Constraint 114 671 0.8000 1.0000 2.0000 0.0000 Constraint 114 659 0.8000 1.0000 2.0000 0.0000 Constraint 114 650 0.8000 1.0000 2.0000 0.0000 Constraint 114 642 0.8000 1.0000 2.0000 0.0000 Constraint 114 633 0.8000 1.0000 2.0000 0.0000 Constraint 114 625 0.8000 1.0000 2.0000 0.0000 Constraint 114 613 0.8000 1.0000 2.0000 0.0000 Constraint 114 603 0.8000 1.0000 2.0000 0.0000 Constraint 114 588 0.8000 1.0000 2.0000 0.0000 Constraint 114 572 0.8000 1.0000 2.0000 0.0000 Constraint 114 543 0.8000 1.0000 2.0000 0.0000 Constraint 114 481 0.8000 1.0000 2.0000 0.0000 Constraint 114 472 0.8000 1.0000 2.0000 0.0000 Constraint 114 465 0.8000 1.0000 2.0000 0.0000 Constraint 114 456 0.8000 1.0000 2.0000 0.0000 Constraint 114 443 0.8000 1.0000 2.0000 0.0000 Constraint 114 435 0.8000 1.0000 2.0000 0.0000 Constraint 114 429 0.8000 1.0000 2.0000 0.0000 Constraint 114 418 0.8000 1.0000 2.0000 0.0000 Constraint 114 399 0.8000 1.0000 2.0000 0.0000 Constraint 114 388 0.8000 1.0000 2.0000 0.0000 Constraint 114 380 0.8000 1.0000 2.0000 0.0000 Constraint 114 371 0.8000 1.0000 2.0000 0.0000 Constraint 114 363 0.8000 1.0000 2.0000 0.0000 Constraint 114 354 0.8000 1.0000 2.0000 0.0000 Constraint 114 349 0.8000 1.0000 2.0000 0.0000 Constraint 114 335 0.8000 1.0000 2.0000 0.0000 Constraint 114 323 0.8000 1.0000 2.0000 0.0000 Constraint 114 248 0.8000 1.0000 2.0000 0.0000 Constraint 114 241 0.8000 1.0000 2.0000 0.0000 Constraint 114 233 0.8000 1.0000 2.0000 0.0000 Constraint 114 221 0.8000 1.0000 2.0000 0.0000 Constraint 114 213 0.8000 1.0000 2.0000 0.0000 Constraint 114 207 0.8000 1.0000 2.0000 0.0000 Constraint 114 200 0.8000 1.0000 2.0000 0.0000 Constraint 114 194 0.8000 1.0000 2.0000 0.0000 Constraint 114 182 0.8000 1.0000 2.0000 0.0000 Constraint 114 173 0.8000 1.0000 2.0000 0.0000 Constraint 114 148 0.8000 1.0000 2.0000 0.0000 Constraint 114 142 0.8000 1.0000 2.0000 0.0000 Constraint 114 134 0.8000 1.0000 2.0000 0.0000 Constraint 114 122 0.8000 1.0000 2.0000 0.0000 Constraint 106 692 0.8000 1.0000 2.0000 0.0000 Constraint 106 683 0.8000 1.0000 2.0000 0.0000 Constraint 106 671 0.8000 1.0000 2.0000 0.0000 Constraint 106 659 0.8000 1.0000 2.0000 0.0000 Constraint 106 650 0.8000 1.0000 2.0000 0.0000 Constraint 106 642 0.8000 1.0000 2.0000 0.0000 Constraint 106 633 0.8000 1.0000 2.0000 0.0000 Constraint 106 625 0.8000 1.0000 2.0000 0.0000 Constraint 106 613 0.8000 1.0000 2.0000 0.0000 Constraint 106 603 0.8000 1.0000 2.0000 0.0000 Constraint 106 588 0.8000 1.0000 2.0000 0.0000 Constraint 106 518 0.8000 1.0000 2.0000 0.0000 Constraint 106 509 0.8000 1.0000 2.0000 0.0000 Constraint 106 443 0.8000 1.0000 2.0000 0.0000 Constraint 106 418 0.8000 1.0000 2.0000 0.0000 Constraint 106 406 0.8000 1.0000 2.0000 0.0000 Constraint 106 399 0.8000 1.0000 2.0000 0.0000 Constraint 106 388 0.8000 1.0000 2.0000 0.0000 Constraint 106 380 0.8000 1.0000 2.0000 0.0000 Constraint 106 371 0.8000 1.0000 2.0000 0.0000 Constraint 106 363 0.8000 1.0000 2.0000 0.0000 Constraint 106 354 0.8000 1.0000 2.0000 0.0000 Constraint 106 349 0.8000 1.0000 2.0000 0.0000 Constraint 106 342 0.8000 1.0000 2.0000 0.0000 Constraint 106 335 0.8000 1.0000 2.0000 0.0000 Constraint 106 323 0.8000 1.0000 2.0000 0.0000 Constraint 106 315 0.8000 1.0000 2.0000 0.0000 Constraint 106 310 0.8000 1.0000 2.0000 0.0000 Constraint 106 275 0.8000 1.0000 2.0000 0.0000 Constraint 106 257 0.8000 1.0000 2.0000 0.0000 Constraint 106 248 0.8000 1.0000 2.0000 0.0000 Constraint 106 241 0.8000 1.0000 2.0000 0.0000 Constraint 106 233 0.8000 1.0000 2.0000 0.0000 Constraint 106 221 0.8000 1.0000 2.0000 0.0000 Constraint 106 207 0.8000 1.0000 2.0000 0.0000 Constraint 106 200 0.8000 1.0000 2.0000 0.0000 Constraint 106 194 0.8000 1.0000 2.0000 0.0000 Constraint 106 148 0.8000 1.0000 2.0000 0.0000 Constraint 106 142 0.8000 1.0000 2.0000 0.0000 Constraint 106 134 0.8000 1.0000 2.0000 0.0000 Constraint 106 122 0.8000 1.0000 2.0000 0.0000 Constraint 106 114 0.8000 1.0000 2.0000 0.0000 Constraint 97 692 0.8000 1.0000 2.0000 0.0000 Constraint 97 683 0.8000 1.0000 2.0000 0.0000 Constraint 97 671 0.8000 1.0000 2.0000 0.0000 Constraint 97 659 0.8000 1.0000 2.0000 0.0000 Constraint 97 650 0.8000 1.0000 2.0000 0.0000 Constraint 97 633 0.8000 1.0000 2.0000 0.0000 Constraint 97 625 0.8000 1.0000 2.0000 0.0000 Constraint 97 613 0.8000 1.0000 2.0000 0.0000 Constraint 97 603 0.8000 1.0000 2.0000 0.0000 Constraint 97 595 0.8000 1.0000 2.0000 0.0000 Constraint 97 588 0.8000 1.0000 2.0000 0.0000 Constraint 97 581 0.8000 1.0000 2.0000 0.0000 Constraint 97 572 0.8000 1.0000 2.0000 0.0000 Constraint 97 518 0.8000 1.0000 2.0000 0.0000 Constraint 97 509 0.8000 1.0000 2.0000 0.0000 Constraint 97 488 0.8000 1.0000 2.0000 0.0000 Constraint 97 481 0.8000 1.0000 2.0000 0.0000 Constraint 97 465 0.8000 1.0000 2.0000 0.0000 Constraint 97 456 0.8000 1.0000 2.0000 0.0000 Constraint 97 443 0.8000 1.0000 2.0000 0.0000 Constraint 97 435 0.8000 1.0000 2.0000 0.0000 Constraint 97 429 0.8000 1.0000 2.0000 0.0000 Constraint 97 418 0.8000 1.0000 2.0000 0.0000 Constraint 97 406 0.8000 1.0000 2.0000 0.0000 Constraint 97 399 0.8000 1.0000 2.0000 0.0000 Constraint 97 388 0.8000 1.0000 2.0000 0.0000 Constraint 97 380 0.8000 1.0000 2.0000 0.0000 Constraint 97 371 0.8000 1.0000 2.0000 0.0000 Constraint 97 363 0.8000 1.0000 2.0000 0.0000 Constraint 97 354 0.8000 1.0000 2.0000 0.0000 Constraint 97 349 0.8000 1.0000 2.0000 0.0000 Constraint 97 342 0.8000 1.0000 2.0000 0.0000 Constraint 97 335 0.8000 1.0000 2.0000 0.0000 Constraint 97 323 0.8000 1.0000 2.0000 0.0000 Constraint 97 315 0.8000 1.0000 2.0000 0.0000 Constraint 97 310 0.8000 1.0000 2.0000 0.0000 Constraint 97 305 0.8000 1.0000 2.0000 0.0000 Constraint 97 275 0.8000 1.0000 2.0000 0.0000 Constraint 97 257 0.8000 1.0000 2.0000 0.0000 Constraint 97 248 0.8000 1.0000 2.0000 0.0000 Constraint 97 241 0.8000 1.0000 2.0000 0.0000 Constraint 97 233 0.8000 1.0000 2.0000 0.0000 Constraint 97 207 0.8000 1.0000 2.0000 0.0000 Constraint 97 200 0.8000 1.0000 2.0000 0.0000 Constraint 97 194 0.8000 1.0000 2.0000 0.0000 Constraint 97 173 0.8000 1.0000 2.0000 0.0000 Constraint 97 168 0.8000 1.0000 2.0000 0.0000 Constraint 97 148 0.8000 1.0000 2.0000 0.0000 Constraint 97 142 0.8000 1.0000 2.0000 0.0000 Constraint 97 134 0.8000 1.0000 2.0000 0.0000 Constraint 97 122 0.8000 1.0000 2.0000 0.0000 Constraint 97 114 0.8000 1.0000 2.0000 0.0000 Constraint 97 106 0.8000 1.0000 2.0000 0.0000 Constraint 92 692 0.8000 1.0000 2.0000 0.0000 Constraint 92 683 0.8000 1.0000 2.0000 0.0000 Constraint 92 671 0.8000 1.0000 2.0000 0.0000 Constraint 92 659 0.8000 1.0000 2.0000 0.0000 Constraint 92 650 0.8000 1.0000 2.0000 0.0000 Constraint 92 642 0.8000 1.0000 2.0000 0.0000 Constraint 92 633 0.8000 1.0000 2.0000 0.0000 Constraint 92 625 0.8000 1.0000 2.0000 0.0000 Constraint 92 613 0.8000 1.0000 2.0000 0.0000 Constraint 92 603 0.8000 1.0000 2.0000 0.0000 Constraint 92 595 0.8000 1.0000 2.0000 0.0000 Constraint 92 588 0.8000 1.0000 2.0000 0.0000 Constraint 92 526 0.8000 1.0000 2.0000 0.0000 Constraint 92 518 0.8000 1.0000 2.0000 0.0000 Constraint 92 509 0.8000 1.0000 2.0000 0.0000 Constraint 92 504 0.8000 1.0000 2.0000 0.0000 Constraint 92 497 0.8000 1.0000 2.0000 0.0000 Constraint 92 488 0.8000 1.0000 2.0000 0.0000 Constraint 92 481 0.8000 1.0000 2.0000 0.0000 Constraint 92 465 0.8000 1.0000 2.0000 0.0000 Constraint 92 456 0.8000 1.0000 2.0000 0.0000 Constraint 92 443 0.8000 1.0000 2.0000 0.0000 Constraint 92 435 0.8000 1.0000 2.0000 0.0000 Constraint 92 429 0.8000 1.0000 2.0000 0.0000 Constraint 92 418 0.8000 1.0000 2.0000 0.0000 Constraint 92 406 0.8000 1.0000 2.0000 0.0000 Constraint 92 399 0.8000 1.0000 2.0000 0.0000 Constraint 92 388 0.8000 1.0000 2.0000 0.0000 Constraint 92 380 0.8000 1.0000 2.0000 0.0000 Constraint 92 371 0.8000 1.0000 2.0000 0.0000 Constraint 92 363 0.8000 1.0000 2.0000 0.0000 Constraint 92 354 0.8000 1.0000 2.0000 0.0000 Constraint 92 349 0.8000 1.0000 2.0000 0.0000 Constraint 92 342 0.8000 1.0000 2.0000 0.0000 Constraint 92 335 0.8000 1.0000 2.0000 0.0000 Constraint 92 323 0.8000 1.0000 2.0000 0.0000 Constraint 92 275 0.8000 1.0000 2.0000 0.0000 Constraint 92 257 0.8000 1.0000 2.0000 0.0000 Constraint 92 248 0.8000 1.0000 2.0000 0.0000 Constraint 92 233 0.8000 1.0000 2.0000 0.0000 Constraint 92 207 0.8000 1.0000 2.0000 0.0000 Constraint 92 200 0.8000 1.0000 2.0000 0.0000 Constraint 92 194 0.8000 1.0000 2.0000 0.0000 Constraint 92 168 0.8000 1.0000 2.0000 0.0000 Constraint 92 148 0.8000 1.0000 2.0000 0.0000 Constraint 92 142 0.8000 1.0000 2.0000 0.0000 Constraint 92 134 0.8000 1.0000 2.0000 0.0000 Constraint 92 122 0.8000 1.0000 2.0000 0.0000 Constraint 92 114 0.8000 1.0000 2.0000 0.0000 Constraint 92 106 0.8000 1.0000 2.0000 0.0000 Constraint 92 97 0.8000 1.0000 2.0000 0.0000 Constraint 84 692 0.8000 1.0000 2.0000 0.0000 Constraint 84 683 0.8000 1.0000 2.0000 0.0000 Constraint 84 671 0.8000 1.0000 2.0000 0.0000 Constraint 84 659 0.8000 1.0000 2.0000 0.0000 Constraint 84 650 0.8000 1.0000 2.0000 0.0000 Constraint 84 642 0.8000 1.0000 2.0000 0.0000 Constraint 84 633 0.8000 1.0000 2.0000 0.0000 Constraint 84 625 0.8000 1.0000 2.0000 0.0000 Constraint 84 613 0.8000 1.0000 2.0000 0.0000 Constraint 84 603 0.8000 1.0000 2.0000 0.0000 Constraint 84 595 0.8000 1.0000 2.0000 0.0000 Constraint 84 518 0.8000 1.0000 2.0000 0.0000 Constraint 84 509 0.8000 1.0000 2.0000 0.0000 Constraint 84 488 0.8000 1.0000 2.0000 0.0000 Constraint 84 481 0.8000 1.0000 2.0000 0.0000 Constraint 84 465 0.8000 1.0000 2.0000 0.0000 Constraint 84 456 0.8000 1.0000 2.0000 0.0000 Constraint 84 443 0.8000 1.0000 2.0000 0.0000 Constraint 84 435 0.8000 1.0000 2.0000 0.0000 Constraint 84 429 0.8000 1.0000 2.0000 0.0000 Constraint 84 418 0.8000 1.0000 2.0000 0.0000 Constraint 84 399 0.8000 1.0000 2.0000 0.0000 Constraint 84 388 0.8000 1.0000 2.0000 0.0000 Constraint 84 371 0.8000 1.0000 2.0000 0.0000 Constraint 84 363 0.8000 1.0000 2.0000 0.0000 Constraint 84 354 0.8000 1.0000 2.0000 0.0000 Constraint 84 349 0.8000 1.0000 2.0000 0.0000 Constraint 84 342 0.8000 1.0000 2.0000 0.0000 Constraint 84 335 0.8000 1.0000 2.0000 0.0000 Constraint 84 257 0.8000 1.0000 2.0000 0.0000 Constraint 84 248 0.8000 1.0000 2.0000 0.0000 Constraint 84 207 0.8000 1.0000 2.0000 0.0000 Constraint 84 200 0.8000 1.0000 2.0000 0.0000 Constraint 84 194 0.8000 1.0000 2.0000 0.0000 Constraint 84 168 0.8000 1.0000 2.0000 0.0000 Constraint 84 142 0.8000 1.0000 2.0000 0.0000 Constraint 84 134 0.8000 1.0000 2.0000 0.0000 Constraint 84 122 0.8000 1.0000 2.0000 0.0000 Constraint 84 114 0.8000 1.0000 2.0000 0.0000 Constraint 84 106 0.8000 1.0000 2.0000 0.0000 Constraint 84 97 0.8000 1.0000 2.0000 0.0000 Constraint 84 92 0.8000 1.0000 2.0000 0.0000 Constraint 75 692 0.8000 1.0000 2.0000 0.0000 Constraint 75 683 0.8000 1.0000 2.0000 0.0000 Constraint 75 671 0.8000 1.0000 2.0000 0.0000 Constraint 75 659 0.8000 1.0000 2.0000 0.0000 Constraint 75 650 0.8000 1.0000 2.0000 0.0000 Constraint 75 642 0.8000 1.0000 2.0000 0.0000 Constraint 75 633 0.8000 1.0000 2.0000 0.0000 Constraint 75 625 0.8000 1.0000 2.0000 0.0000 Constraint 75 613 0.8000 1.0000 2.0000 0.0000 Constraint 75 543 0.8000 1.0000 2.0000 0.0000 Constraint 75 518 0.8000 1.0000 2.0000 0.0000 Constraint 75 509 0.8000 1.0000 2.0000 0.0000 Constraint 75 504 0.8000 1.0000 2.0000 0.0000 Constraint 75 497 0.8000 1.0000 2.0000 0.0000 Constraint 75 488 0.8000 1.0000 2.0000 0.0000 Constraint 75 481 0.8000 1.0000 2.0000 0.0000 Constraint 75 456 0.8000 1.0000 2.0000 0.0000 Constraint 75 443 0.8000 1.0000 2.0000 0.0000 Constraint 75 435 0.8000 1.0000 2.0000 0.0000 Constraint 75 429 0.8000 1.0000 2.0000 0.0000 Constraint 75 418 0.8000 1.0000 2.0000 0.0000 Constraint 75 399 0.8000 1.0000 2.0000 0.0000 Constraint 75 388 0.8000 1.0000 2.0000 0.0000 Constraint 75 380 0.8000 1.0000 2.0000 0.0000 Constraint 75 371 0.8000 1.0000 2.0000 0.0000 Constraint 75 363 0.8000 1.0000 2.0000 0.0000 Constraint 75 354 0.8000 1.0000 2.0000 0.0000 Constraint 75 349 0.8000 1.0000 2.0000 0.0000 Constraint 75 283 0.8000 1.0000 2.0000 0.0000 Constraint 75 275 0.8000 1.0000 2.0000 0.0000 Constraint 75 264 0.8000 1.0000 2.0000 0.0000 Constraint 75 194 0.8000 1.0000 2.0000 0.0000 Constraint 75 173 0.8000 1.0000 2.0000 0.0000 Constraint 75 134 0.8000 1.0000 2.0000 0.0000 Constraint 75 122 0.8000 1.0000 2.0000 0.0000 Constraint 75 114 0.8000 1.0000 2.0000 0.0000 Constraint 75 106 0.8000 1.0000 2.0000 0.0000 Constraint 75 97 0.8000 1.0000 2.0000 0.0000 Constraint 75 92 0.8000 1.0000 2.0000 0.0000 Constraint 75 84 0.8000 1.0000 2.0000 0.0000 Constraint 66 692 0.8000 1.0000 2.0000 0.0000 Constraint 66 683 0.8000 1.0000 2.0000 0.0000 Constraint 66 671 0.8000 1.0000 2.0000 0.0000 Constraint 66 659 0.8000 1.0000 2.0000 0.0000 Constraint 66 650 0.8000 1.0000 2.0000 0.0000 Constraint 66 633 0.8000 1.0000 2.0000 0.0000 Constraint 66 625 0.8000 1.0000 2.0000 0.0000 Constraint 66 613 0.8000 1.0000 2.0000 0.0000 Constraint 66 543 0.8000 1.0000 2.0000 0.0000 Constraint 66 526 0.8000 1.0000 2.0000 0.0000 Constraint 66 518 0.8000 1.0000 2.0000 0.0000 Constraint 66 509 0.8000 1.0000 2.0000 0.0000 Constraint 66 504 0.8000 1.0000 2.0000 0.0000 Constraint 66 497 0.8000 1.0000 2.0000 0.0000 Constraint 66 488 0.8000 1.0000 2.0000 0.0000 Constraint 66 465 0.8000 1.0000 2.0000 0.0000 Constraint 66 456 0.8000 1.0000 2.0000 0.0000 Constraint 66 443 0.8000 1.0000 2.0000 0.0000 Constraint 66 435 0.8000 1.0000 2.0000 0.0000 Constraint 66 429 0.8000 1.0000 2.0000 0.0000 Constraint 66 418 0.8000 1.0000 2.0000 0.0000 Constraint 66 388 0.8000 1.0000 2.0000 0.0000 Constraint 66 380 0.8000 1.0000 2.0000 0.0000 Constraint 66 371 0.8000 1.0000 2.0000 0.0000 Constraint 66 363 0.8000 1.0000 2.0000 0.0000 Constraint 66 354 0.8000 1.0000 2.0000 0.0000 Constraint 66 349 0.8000 1.0000 2.0000 0.0000 Constraint 66 283 0.8000 1.0000 2.0000 0.0000 Constraint 66 275 0.8000 1.0000 2.0000 0.0000 Constraint 66 241 0.8000 1.0000 2.0000 0.0000 Constraint 66 207 0.8000 1.0000 2.0000 0.0000 Constraint 66 194 0.8000 1.0000 2.0000 0.0000 Constraint 66 182 0.8000 1.0000 2.0000 0.0000 Constraint 66 142 0.8000 1.0000 2.0000 0.0000 Constraint 66 122 0.8000 1.0000 2.0000 0.0000 Constraint 66 114 0.8000 1.0000 2.0000 0.0000 Constraint 66 106 0.8000 1.0000 2.0000 0.0000 Constraint 66 97 0.8000 1.0000 2.0000 0.0000 Constraint 66 92 0.8000 1.0000 2.0000 0.0000 Constraint 66 84 0.8000 1.0000 2.0000 0.0000 Constraint 66 75 0.8000 1.0000 2.0000 0.0000 Constraint 58 692 0.8000 1.0000 2.0000 0.0000 Constraint 58 683 0.8000 1.0000 2.0000 0.0000 Constraint 58 671 0.8000 1.0000 2.0000 0.0000 Constraint 58 659 0.8000 1.0000 2.0000 0.0000 Constraint 58 650 0.8000 1.0000 2.0000 0.0000 Constraint 58 642 0.8000 1.0000 2.0000 0.0000 Constraint 58 633 0.8000 1.0000 2.0000 0.0000 Constraint 58 559 0.8000 1.0000 2.0000 0.0000 Constraint 58 543 0.8000 1.0000 2.0000 0.0000 Constraint 58 518 0.8000 1.0000 2.0000 0.0000 Constraint 58 509 0.8000 1.0000 2.0000 0.0000 Constraint 58 504 0.8000 1.0000 2.0000 0.0000 Constraint 58 497 0.8000 1.0000 2.0000 0.0000 Constraint 58 488 0.8000 1.0000 2.0000 0.0000 Constraint 58 481 0.8000 1.0000 2.0000 0.0000 Constraint 58 465 0.8000 1.0000 2.0000 0.0000 Constraint 58 456 0.8000 1.0000 2.0000 0.0000 Constraint 58 443 0.8000 1.0000 2.0000 0.0000 Constraint 58 435 0.8000 1.0000 2.0000 0.0000 Constraint 58 429 0.8000 1.0000 2.0000 0.0000 Constraint 58 418 0.8000 1.0000 2.0000 0.0000 Constraint 58 388 0.8000 1.0000 2.0000 0.0000 Constraint 58 363 0.8000 1.0000 2.0000 0.0000 Constraint 58 354 0.8000 1.0000 2.0000 0.0000 Constraint 58 349 0.8000 1.0000 2.0000 0.0000 Constraint 58 275 0.8000 1.0000 2.0000 0.0000 Constraint 58 248 0.8000 1.0000 2.0000 0.0000 Constraint 58 241 0.8000 1.0000 2.0000 0.0000 Constraint 58 122 0.8000 1.0000 2.0000 0.0000 Constraint 58 114 0.8000 1.0000 2.0000 0.0000 Constraint 58 106 0.8000 1.0000 2.0000 0.0000 Constraint 58 97 0.8000 1.0000 2.0000 0.0000 Constraint 58 92 0.8000 1.0000 2.0000 0.0000 Constraint 58 84 0.8000 1.0000 2.0000 0.0000 Constraint 58 75 0.8000 1.0000 2.0000 0.0000 Constraint 58 66 0.8000 1.0000 2.0000 0.0000 Constraint 51 692 0.8000 1.0000 2.0000 0.0000 Constraint 51 683 0.8000 1.0000 2.0000 0.0000 Constraint 51 671 0.8000 1.0000 2.0000 0.0000 Constraint 51 650 0.8000 1.0000 2.0000 0.0000 Constraint 51 633 0.8000 1.0000 2.0000 0.0000 Constraint 51 559 0.8000 1.0000 2.0000 0.0000 Constraint 51 543 0.8000 1.0000 2.0000 0.0000 Constraint 51 518 0.8000 1.0000 2.0000 0.0000 Constraint 51 509 0.8000 1.0000 2.0000 0.0000 Constraint 51 504 0.8000 1.0000 2.0000 0.0000 Constraint 51 497 0.8000 1.0000 2.0000 0.0000 Constraint 51 488 0.8000 1.0000 2.0000 0.0000 Constraint 51 435 0.8000 1.0000 2.0000 0.0000 Constraint 51 429 0.8000 1.0000 2.0000 0.0000 Constraint 51 418 0.8000 1.0000 2.0000 0.0000 Constraint 51 399 0.8000 1.0000 2.0000 0.0000 Constraint 51 388 0.8000 1.0000 2.0000 0.0000 Constraint 51 380 0.8000 1.0000 2.0000 0.0000 Constraint 51 371 0.8000 1.0000 2.0000 0.0000 Constraint 51 354 0.8000 1.0000 2.0000 0.0000 Constraint 51 349 0.8000 1.0000 2.0000 0.0000 Constraint 51 310 0.8000 1.0000 2.0000 0.0000 Constraint 51 283 0.8000 1.0000 2.0000 0.0000 Constraint 51 275 0.8000 1.0000 2.0000 0.0000 Constraint 51 264 0.8000 1.0000 2.0000 0.0000 Constraint 51 257 0.8000 1.0000 2.0000 0.0000 Constraint 51 248 0.8000 1.0000 2.0000 0.0000 Constraint 51 241 0.8000 1.0000 2.0000 0.0000 Constraint 51 221 0.8000 1.0000 2.0000 0.0000 Constraint 51 207 0.8000 1.0000 2.0000 0.0000 Constraint 51 200 0.8000 1.0000 2.0000 0.0000 Constraint 51 114 0.8000 1.0000 2.0000 0.0000 Constraint 51 106 0.8000 1.0000 2.0000 0.0000 Constraint 51 97 0.8000 1.0000 2.0000 0.0000 Constraint 51 92 0.8000 1.0000 2.0000 0.0000 Constraint 51 84 0.8000 1.0000 2.0000 0.0000 Constraint 51 75 0.8000 1.0000 2.0000 0.0000 Constraint 51 66 0.8000 1.0000 2.0000 0.0000 Constraint 51 58 0.8000 1.0000 2.0000 0.0000 Constraint 44 671 0.8000 1.0000 2.0000 0.0000 Constraint 44 559 0.8000 1.0000 2.0000 0.0000 Constraint 44 552 0.8000 1.0000 2.0000 0.0000 Constraint 44 543 0.8000 1.0000 2.0000 0.0000 Constraint 44 534 0.8000 1.0000 2.0000 0.0000 Constraint 44 526 0.8000 1.0000 2.0000 0.0000 Constraint 44 518 0.8000 1.0000 2.0000 0.0000 Constraint 44 509 0.8000 1.0000 2.0000 0.0000 Constraint 44 504 0.8000 1.0000 2.0000 0.0000 Constraint 44 497 0.8000 1.0000 2.0000 0.0000 Constraint 44 488 0.8000 1.0000 2.0000 0.0000 Constraint 44 481 0.8000 1.0000 2.0000 0.0000 Constraint 44 465 0.8000 1.0000 2.0000 0.0000 Constraint 44 443 0.8000 1.0000 2.0000 0.0000 Constraint 44 435 0.8000 1.0000 2.0000 0.0000 Constraint 44 429 0.8000 1.0000 2.0000 0.0000 Constraint 44 418 0.8000 1.0000 2.0000 0.0000 Constraint 44 406 0.8000 1.0000 2.0000 0.0000 Constraint 44 380 0.8000 1.0000 2.0000 0.0000 Constraint 44 371 0.8000 1.0000 2.0000 0.0000 Constraint 44 354 0.8000 1.0000 2.0000 0.0000 Constraint 44 349 0.8000 1.0000 2.0000 0.0000 Constraint 44 310 0.8000 1.0000 2.0000 0.0000 Constraint 44 283 0.8000 1.0000 2.0000 0.0000 Constraint 44 275 0.8000 1.0000 2.0000 0.0000 Constraint 44 257 0.8000 1.0000 2.0000 0.0000 Constraint 44 248 0.8000 1.0000 2.0000 0.0000 Constraint 44 233 0.8000 1.0000 2.0000 0.0000 Constraint 44 207 0.8000 1.0000 2.0000 0.0000 Constraint 44 106 0.8000 1.0000 2.0000 0.0000 Constraint 44 97 0.8000 1.0000 2.0000 0.0000 Constraint 44 92 0.8000 1.0000 2.0000 0.0000 Constraint 44 84 0.8000 1.0000 2.0000 0.0000 Constraint 44 75 0.8000 1.0000 2.0000 0.0000 Constraint 44 66 0.8000 1.0000 2.0000 0.0000 Constraint 44 58 0.8000 1.0000 2.0000 0.0000 Constraint 44 51 0.8000 1.0000 2.0000 0.0000 Constraint 35 692 0.8000 1.0000 2.0000 0.0000 Constraint 35 671 0.8000 1.0000 2.0000 0.0000 Constraint 35 559 0.8000 1.0000 2.0000 0.0000 Constraint 35 552 0.8000 1.0000 2.0000 0.0000 Constraint 35 543 0.8000 1.0000 2.0000 0.0000 Constraint 35 534 0.8000 1.0000 2.0000 0.0000 Constraint 35 526 0.8000 1.0000 2.0000 0.0000 Constraint 35 518 0.8000 1.0000 2.0000 0.0000 Constraint 35 509 0.8000 1.0000 2.0000 0.0000 Constraint 35 504 0.8000 1.0000 2.0000 0.0000 Constraint 35 488 0.8000 1.0000 2.0000 0.0000 Constraint 35 456 0.8000 1.0000 2.0000 0.0000 Constraint 35 443 0.8000 1.0000 2.0000 0.0000 Constraint 35 435 0.8000 1.0000 2.0000 0.0000 Constraint 35 429 0.8000 1.0000 2.0000 0.0000 Constraint 35 418 0.8000 1.0000 2.0000 0.0000 Constraint 35 406 0.8000 1.0000 2.0000 0.0000 Constraint 35 399 0.8000 1.0000 2.0000 0.0000 Constraint 35 371 0.8000 1.0000 2.0000 0.0000 Constraint 35 354 0.8000 1.0000 2.0000 0.0000 Constraint 35 315 0.8000 1.0000 2.0000 0.0000 Constraint 35 310 0.8000 1.0000 2.0000 0.0000 Constraint 35 298 0.8000 1.0000 2.0000 0.0000 Constraint 35 291 0.8000 1.0000 2.0000 0.0000 Constraint 35 283 0.8000 1.0000 2.0000 0.0000 Constraint 35 275 0.8000 1.0000 2.0000 0.0000 Constraint 35 264 0.8000 1.0000 2.0000 0.0000 Constraint 35 257 0.8000 1.0000 2.0000 0.0000 Constraint 35 248 0.8000 1.0000 2.0000 0.0000 Constraint 35 207 0.8000 1.0000 2.0000 0.0000 Constraint 35 97 0.8000 1.0000 2.0000 0.0000 Constraint 35 92 0.8000 1.0000 2.0000 0.0000 Constraint 35 84 0.8000 1.0000 2.0000 0.0000 Constraint 35 75 0.8000 1.0000 2.0000 0.0000 Constraint 35 66 0.8000 1.0000 2.0000 0.0000 Constraint 35 58 0.8000 1.0000 2.0000 0.0000 Constraint 35 51 0.8000 1.0000 2.0000 0.0000 Constraint 35 44 0.8000 1.0000 2.0000 0.0000 Constraint 24 581 0.8000 1.0000 2.0000 0.0000 Constraint 24 572 0.8000 1.0000 2.0000 0.0000 Constraint 24 559 0.8000 1.0000 2.0000 0.0000 Constraint 24 552 0.8000 1.0000 2.0000 0.0000 Constraint 24 543 0.8000 1.0000 2.0000 0.0000 Constraint 24 534 0.8000 1.0000 2.0000 0.0000 Constraint 24 526 0.8000 1.0000 2.0000 0.0000 Constraint 24 518 0.8000 1.0000 2.0000 0.0000 Constraint 24 504 0.8000 1.0000 2.0000 0.0000 Constraint 24 497 0.8000 1.0000 2.0000 0.0000 Constraint 24 488 0.8000 1.0000 2.0000 0.0000 Constraint 24 472 0.8000 1.0000 2.0000 0.0000 Constraint 24 465 0.8000 1.0000 2.0000 0.0000 Constraint 24 456 0.8000 1.0000 2.0000 0.0000 Constraint 24 443 0.8000 1.0000 2.0000 0.0000 Constraint 24 435 0.8000 1.0000 2.0000 0.0000 Constraint 24 429 0.8000 1.0000 2.0000 0.0000 Constraint 24 418 0.8000 1.0000 2.0000 0.0000 Constraint 24 406 0.8000 1.0000 2.0000 0.0000 Constraint 24 399 0.8000 1.0000 2.0000 0.0000 Constraint 24 380 0.8000 1.0000 2.0000 0.0000 Constraint 24 371 0.8000 1.0000 2.0000 0.0000 Constraint 24 354 0.8000 1.0000 2.0000 0.0000 Constraint 24 349 0.8000 1.0000 2.0000 0.0000 Constraint 24 323 0.8000 1.0000 2.0000 0.0000 Constraint 24 315 0.8000 1.0000 2.0000 0.0000 Constraint 24 310 0.8000 1.0000 2.0000 0.0000 Constraint 24 298 0.8000 1.0000 2.0000 0.0000 Constraint 24 283 0.8000 1.0000 2.0000 0.0000 Constraint 24 275 0.8000 1.0000 2.0000 0.0000 Constraint 24 241 0.8000 1.0000 2.0000 0.0000 Constraint 24 221 0.8000 1.0000 2.0000 0.0000 Constraint 24 213 0.8000 1.0000 2.0000 0.0000 Constraint 24 207 0.8000 1.0000 2.0000 0.0000 Constraint 24 200 0.8000 1.0000 2.0000 0.0000 Constraint 24 182 0.8000 1.0000 2.0000 0.0000 Constraint 24 173 0.8000 1.0000 2.0000 0.0000 Constraint 24 168 0.8000 1.0000 2.0000 0.0000 Constraint 24 122 0.8000 1.0000 2.0000 0.0000 Constraint 24 97 0.8000 1.0000 2.0000 0.0000 Constraint 24 84 0.8000 1.0000 2.0000 0.0000 Constraint 24 75 0.8000 1.0000 2.0000 0.0000 Constraint 24 66 0.8000 1.0000 2.0000 0.0000 Constraint 24 58 0.8000 1.0000 2.0000 0.0000 Constraint 24 51 0.8000 1.0000 2.0000 0.0000 Constraint 24 44 0.8000 1.0000 2.0000 0.0000 Constraint 24 35 0.8000 1.0000 2.0000 0.0000 Constraint 17 595 0.8000 1.0000 2.0000 0.0000 Constraint 17 588 0.8000 1.0000 2.0000 0.0000 Constraint 17 581 0.8000 1.0000 2.0000 0.0000 Constraint 17 572 0.8000 1.0000 2.0000 0.0000 Constraint 17 559 0.8000 1.0000 2.0000 0.0000 Constraint 17 552 0.8000 1.0000 2.0000 0.0000 Constraint 17 543 0.8000 1.0000 2.0000 0.0000 Constraint 17 534 0.8000 1.0000 2.0000 0.0000 Constraint 17 526 0.8000 1.0000 2.0000 0.0000 Constraint 17 518 0.8000 1.0000 2.0000 0.0000 Constraint 17 504 0.8000 1.0000 2.0000 0.0000 Constraint 17 497 0.8000 1.0000 2.0000 0.0000 Constraint 17 488 0.8000 1.0000 2.0000 0.0000 Constraint 17 481 0.8000 1.0000 2.0000 0.0000 Constraint 17 472 0.8000 1.0000 2.0000 0.0000 Constraint 17 465 0.8000 1.0000 2.0000 0.0000 Constraint 17 456 0.8000 1.0000 2.0000 0.0000 Constraint 17 443 0.8000 1.0000 2.0000 0.0000 Constraint 17 435 0.8000 1.0000 2.0000 0.0000 Constraint 17 429 0.8000 1.0000 2.0000 0.0000 Constraint 17 418 0.8000 1.0000 2.0000 0.0000 Constraint 17 406 0.8000 1.0000 2.0000 0.0000 Constraint 17 399 0.8000 1.0000 2.0000 0.0000 Constraint 17 380 0.8000 1.0000 2.0000 0.0000 Constraint 17 354 0.8000 1.0000 2.0000 0.0000 Constraint 17 323 0.8000 1.0000 2.0000 0.0000 Constraint 17 315 0.8000 1.0000 2.0000 0.0000 Constraint 17 275 0.8000 1.0000 2.0000 0.0000 Constraint 17 248 0.8000 1.0000 2.0000 0.0000 Constraint 17 241 0.8000 1.0000 2.0000 0.0000 Constraint 17 233 0.8000 1.0000 2.0000 0.0000 Constraint 17 221 0.8000 1.0000 2.0000 0.0000 Constraint 17 213 0.8000 1.0000 2.0000 0.0000 Constraint 17 207 0.8000 1.0000 2.0000 0.0000 Constraint 17 200 0.8000 1.0000 2.0000 0.0000 Constraint 17 194 0.8000 1.0000 2.0000 0.0000 Constraint 17 182 0.8000 1.0000 2.0000 0.0000 Constraint 17 122 0.8000 1.0000 2.0000 0.0000 Constraint 17 114 0.8000 1.0000 2.0000 0.0000 Constraint 17 97 0.8000 1.0000 2.0000 0.0000 Constraint 17 75 0.8000 1.0000 2.0000 0.0000 Constraint 17 66 0.8000 1.0000 2.0000 0.0000 Constraint 17 58 0.8000 1.0000 2.0000 0.0000 Constraint 17 51 0.8000 1.0000 2.0000 0.0000 Constraint 17 44 0.8000 1.0000 2.0000 0.0000 Constraint 17 35 0.8000 1.0000 2.0000 0.0000 Constraint 17 24 0.8000 1.0000 2.0000 0.0000 Constraint 9 595 0.8000 1.0000 2.0000 0.0000 Constraint 9 588 0.8000 1.0000 2.0000 0.0000 Constraint 9 581 0.8000 1.0000 2.0000 0.0000 Constraint 9 572 0.8000 1.0000 2.0000 0.0000 Constraint 9 559 0.8000 1.0000 2.0000 0.0000 Constraint 9 552 0.8000 1.0000 2.0000 0.0000 Constraint 9 543 0.8000 1.0000 2.0000 0.0000 Constraint 9 534 0.8000 1.0000 2.0000 0.0000 Constraint 9 518 0.8000 1.0000 2.0000 0.0000 Constraint 9 504 0.8000 1.0000 2.0000 0.0000 Constraint 9 497 0.8000 1.0000 2.0000 0.0000 Constraint 9 488 0.8000 1.0000 2.0000 0.0000 Constraint 9 472 0.8000 1.0000 2.0000 0.0000 Constraint 9 465 0.8000 1.0000 2.0000 0.0000 Constraint 9 456 0.8000 1.0000 2.0000 0.0000 Constraint 9 443 0.8000 1.0000 2.0000 0.0000 Constraint 9 435 0.8000 1.0000 2.0000 0.0000 Constraint 9 429 0.8000 1.0000 2.0000 0.0000 Constraint 9 418 0.8000 1.0000 2.0000 0.0000 Constraint 9 406 0.8000 1.0000 2.0000 0.0000 Constraint 9 399 0.8000 1.0000 2.0000 0.0000 Constraint 9 380 0.8000 1.0000 2.0000 0.0000 Constraint 9 363 0.8000 1.0000 2.0000 0.0000 Constraint 9 354 0.8000 1.0000 2.0000 0.0000 Constraint 9 342 0.8000 1.0000 2.0000 0.0000 Constraint 9 323 0.8000 1.0000 2.0000 0.0000 Constraint 9 315 0.8000 1.0000 2.0000 0.0000 Constraint 9 310 0.8000 1.0000 2.0000 0.0000 Constraint 9 283 0.8000 1.0000 2.0000 0.0000 Constraint 9 275 0.8000 1.0000 2.0000 0.0000 Constraint 9 264 0.8000 1.0000 2.0000 0.0000 Constraint 9 257 0.8000 1.0000 2.0000 0.0000 Constraint 9 248 0.8000 1.0000 2.0000 0.0000 Constraint 9 241 0.8000 1.0000 2.0000 0.0000 Constraint 9 233 0.8000 1.0000 2.0000 0.0000 Constraint 9 221 0.8000 1.0000 2.0000 0.0000 Constraint 9 213 0.8000 1.0000 2.0000 0.0000 Constraint 9 207 0.8000 1.0000 2.0000 0.0000 Constraint 9 182 0.8000 1.0000 2.0000 0.0000 Constraint 9 122 0.8000 1.0000 2.0000 0.0000 Constraint 9 114 0.8000 1.0000 2.0000 0.0000 Constraint 9 66 0.8000 1.0000 2.0000 0.0000 Constraint 9 58 0.8000 1.0000 2.0000 0.0000 Constraint 9 51 0.8000 1.0000 2.0000 0.0000 Constraint 9 44 0.8000 1.0000 2.0000 0.0000 Constraint 9 35 0.8000 1.0000 2.0000 0.0000 Constraint 9 24 0.8000 1.0000 2.0000 0.0000 Constraint 9 17 0.8000 1.0000 2.0000 0.0000 Constraint 3 603 0.8000 1.0000 2.0000 0.0000 Constraint 3 595 0.8000 1.0000 2.0000 0.0000 Constraint 3 588 0.8000 1.0000 2.0000 0.0000 Constraint 3 581 0.8000 1.0000 2.0000 0.0000 Constraint 3 572 0.8000 1.0000 2.0000 0.0000 Constraint 3 559 0.8000 1.0000 2.0000 0.0000 Constraint 3 552 0.8000 1.0000 2.0000 0.0000 Constraint 3 543 0.8000 1.0000 2.0000 0.0000 Constraint 3 534 0.8000 1.0000 2.0000 0.0000 Constraint 3 526 0.8000 1.0000 2.0000 0.0000 Constraint 3 518 0.8000 1.0000 2.0000 0.0000 Constraint 3 504 0.8000 1.0000 2.0000 0.0000 Constraint 3 497 0.8000 1.0000 2.0000 0.0000 Constraint 3 488 0.8000 1.0000 2.0000 0.0000 Constraint 3 472 0.8000 1.0000 2.0000 0.0000 Constraint 3 465 0.8000 1.0000 2.0000 0.0000 Constraint 3 456 0.8000 1.0000 2.0000 0.0000 Constraint 3 443 0.8000 1.0000 2.0000 0.0000 Constraint 3 435 0.8000 1.0000 2.0000 0.0000 Constraint 3 429 0.8000 1.0000 2.0000 0.0000 Constraint 3 418 0.8000 1.0000 2.0000 0.0000 Constraint 3 406 0.8000 1.0000 2.0000 0.0000 Constraint 3 399 0.8000 1.0000 2.0000 0.0000 Constraint 3 388 0.8000 1.0000 2.0000 0.0000 Constraint 3 380 0.8000 1.0000 2.0000 0.0000 Constraint 3 371 0.8000 1.0000 2.0000 0.0000 Constraint 3 363 0.8000 1.0000 2.0000 0.0000 Constraint 3 354 0.8000 1.0000 2.0000 0.0000 Constraint 3 342 0.8000 1.0000 2.0000 0.0000 Constraint 3 335 0.8000 1.0000 2.0000 0.0000 Constraint 3 323 0.8000 1.0000 2.0000 0.0000 Constraint 3 315 0.8000 1.0000 2.0000 0.0000 Constraint 3 310 0.8000 1.0000 2.0000 0.0000 Constraint 3 305 0.8000 1.0000 2.0000 0.0000 Constraint 3 283 0.8000 1.0000 2.0000 0.0000 Constraint 3 275 0.8000 1.0000 2.0000 0.0000 Constraint 3 264 0.8000 1.0000 2.0000 0.0000 Constraint 3 257 0.8000 1.0000 2.0000 0.0000 Constraint 3 248 0.8000 1.0000 2.0000 0.0000 Constraint 3 241 0.8000 1.0000 2.0000 0.0000 Constraint 3 233 0.8000 1.0000 2.0000 0.0000 Constraint 3 221 0.8000 1.0000 2.0000 0.0000 Constraint 3 213 0.8000 1.0000 2.0000 0.0000 Constraint 3 207 0.8000 1.0000 2.0000 0.0000 Constraint 3 200 0.8000 1.0000 2.0000 0.0000 Constraint 3 194 0.8000 1.0000 2.0000 0.0000 Constraint 3 182 0.8000 1.0000 2.0000 0.0000 Constraint 3 122 0.8000 1.0000 2.0000 0.0000 Constraint 3 114 0.8000 1.0000 2.0000 0.0000 Constraint 3 92 0.8000 1.0000 2.0000 0.0000 Constraint 3 84 0.8000 1.0000 2.0000 0.0000 Constraint 3 75 0.8000 1.0000 2.0000 0.0000 Constraint 3 66 0.8000 1.0000 2.0000 0.0000 Constraint 3 58 0.8000 1.0000 2.0000 0.0000 Constraint 3 51 0.8000 1.0000 2.0000 0.0000 Constraint 3 44 0.8000 1.0000 2.0000 0.0000 Constraint 3 35 0.8000 1.0000 2.0000 0.0000 Constraint 3 24 0.8000 1.0000 2.0000 0.0000 Constraint 3 17 0.8000 1.0000 2.0000 0.0000 Constraint 3 9 0.8000 1.0000 2.0000 0.0000 Done printing distance constraints # command: