CASPDIR="/projects/compbio/experiments/protein-predict/casp7"

echo "InFilePrefix "$CASPDIR"/T0ID/decoys/" > servers-noscwrl.under
cat $CASPDIR/T0ID/decoys/read-pdb+servers.under | grep -i -v scwrl | grep -v try | grep -v submitted >> servers-noscwrl.under

# Extract the constraints from the alignments
../programs/undertaker < meta.under >& out
cat out|grep -a Constraint|grep -v "#"|gawk -f ../scripts/normalize.awk > metaconstraints.under
cat out|grep RES2ATOM > metares2cbatom.dat
cp out makingmetaconstraints.log
rm -rf out

cp metaconstraints.under temp
echo "SetCost constraints 1" >> temp
cp temp $CASPDIR/T0ID/constraints-meta.costfcn