# List of top-scoring protein chains for T0385.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjxA 157 1.46e-04 a.25.1.1 100837 1mfrA 176 1.17e-02 2fha a.25.1.1 16692 1bcfA 158 1.75e-01 1bcfA a.25.1.1 16648 2fha 183 3.15e-01 2fha a.25.1.1 16674 1nfvA 179 3.46e-01 a.25.1.1 85642 1mftA 53 4.66e-01 k.8.1.1 91262 2fzfA 175 1.58e+00 1u6tA 121 2.00e+00 1wryA 121 2.16e+00 2fkzA 155 2.22e+00 1sofA 156 2.31e+00 1lt1A 50 2.53e+00 k.8.1.1 84690 1bg7 176 3.30e+00 2fha a.25.1.1 16686 1jm0A 50 3.46e+00 k.8.1.1 66870 2ct8A 497 4.34e+00 2b7nA 273 4.93e+00 1u7jA 49 4.97e+00 210l 163 6.50e+00 1l92 d.2.1.3 36884 1v2dA 381 7.14e+00 c.67.1.1 108281 1y47A 46 7.54e+00 2ftcG 145 7.71e+00 1vlgA 176 8.01e+00 a.25.1.1 108816 1r03A 182 8.78e+00 a.25.1.1 104675 2h3bA 494 9.06e+00 2h3dA 494 9.86e+00 1ec5A 50 9.98e+00 1ec5A k.8.1.1 46421 1lhpA 312 1.06e+01 c.72.1.5 77960 1jmkC 230 1.16e+01 c.69.1.22 71747 1jgcA 161 1.50e+01 a.25.1.1 66673 1xneA 113 1.52e+01 1r5pA 108 1.55e+01 c.47.1.15 97101 1w7lA 422 1.59e+01 c.67.1.1 109226 1qr0A 228 1.61e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1sly 618 1.62e+01 1qsaA a.118.5.1,d.2.1.6 19184,36990 1qsaA 618 1.64e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 1sd6A 123 1.92e+01 a.4.5.39 98803 1x6mA 196 2.02e+01 1yswA 164 2.14e+01 1gjhA 166 2.15e+01 1maz f.1.4.1 60575 1hngA 176 2.31e+01 1cczA b.1.1.1,b.1.1.3 19752,21681 1b5l 172 2.32e+01 1b5l a.26.1.3 16900 1l81 164 2.35e+01 1l92 d.2.1.3 36881 1bdfA 235 2.39e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 2dg5A 366 2.39e+01 2gyqA 173 2.40e+01 1zpyA 95 2.45e+01 1wydA 429 2.52e+01 1ywnA 316 2.56e+01 1bc5A 269 2.73e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 165l 164 2.75e+01 1l92 d.2.1.3 36680 1af7 274 2.75e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 2fo7A 136 2.79e+01 1vr2A 316 2.79e+01 1fgkA d.144.1.7 41701 1k1dA 460 2.83e+01 b.92.1.3,c.1.9.6 71979,71980 1eu8A 409 2.85e+01 1eu8A c.94.1.1 59502 1bax 94 2.92e+01 1bax a.61.1.3 18133 1r6uA 437 2.96e+01 c.26.1.1 97163 1p9mA 299 3.03e+01 b.1.2.1,b.1.2.1,b.1.2.1 87991,87992,87993 1i1rA 303 3.03e+01 1bquA b.1.2.1,b.1.2.1,b.1.2.1 61545,61546,61547 1lngA 87 3.11e+01 d.201.1.1 74045 1l9aA 87 3.11e+01 d.201.1.1 73710 1cwn 324 3.16e+01 1frb c.1.7.1 28686 1ae4 325 3.17e+01 1frb c.1.7.1 28689 2ao0A 324 3.17e+01 1o0wA 252 3.18e+01 a.149.1.1,d.50.1.1 80751,80752 1xx1A 285 3.21e+01 1l60 164 3.25e+01 1l92 d.2.1.3 36646 1hqtA 326 3.37e+01 1frb c.1.7.1 61156 1wu8A 256 3.40e+01 1a22A 191 3.44e+01 1huw a.26.1.1 16833 1cr6A 554 3.46e+01 1cr6B c.69.1.11,c.108.1.2 34687,43337 2alr 324 3.47e+01 1frb c.1.7.1 28679 2fnaA 357 3.56e+01 155l 164 3.69e+01 1l92 d.2.1.3 36762 1twfK 120 3.80e+01 1gnxA 479 3.84e+01 c.1.8.4 76241 1g5mA 166 4.03e+01 1maz f.1.4.1 60286 1d6qA 130 4.03e+01 3lzt d.2.1.2 36556 1wwjA 105 4.14e+01 2cq8A 110 4.15e+01 1bucA 383 4.19e+01 3mdeA a.29.3.1,e.6.1.1 16590,42851 1fts 295 4.23e+01 1ng1 a.24.13.1,c.37.1.10 16968,32279 158l 164 4.31e+01 1l92 d.2.1.3 36747 1ex9A 285 4.39e+01 1cvl c.69.1.18 34785 1rci 173 4.42e+01 2fha a.25.1.1 16688 1e19A 314 4.44e+01 1b7bA c.73.1.1 34967 1l77 164 4.44e+01 1l92 d.2.1.3 36866 1ywqA 200 4.57e+01 1l80 164 4.59e+01 1l92 d.2.1.3 36698 1l82 164 4.62e+01 1l92 d.2.1.3 36919 1ji5A 142 4.99e+01 a.25.1.1 71678 2da3A 80 4.99e+01 1kw5A 162 5.07e+01 d.2.1.3 84471 1ky0A 162 5.09e+01 d.2.1.3 84476 238l 164 5.13e+01 1l92 d.2.1.3 36755 1rcd 173 5.14e+01 2fha a.25.1.1 16687 2choA 716 5.18e+01 1rc2A 231 5.22e+01 f.19.1.1 97281 1xxfC 142 5.24e+01 1axiA 191 5.33e+01 1huw a.26.1.1 16832 1xxdC 142 5.39e+01 138l 164 5.43e+01 1l92 d.2.1.3 36679 1o51A 114 5.45e+01 d.58.5.4 92480 1kw7A 162 5.47e+01 d.2.1.3 84472 1e5iA 306 5.50e+01 1dcs b.82.2.1 59270 1e5hA 308 5.50e+01 1dcs b.82.2.1 59269 1hjgA 311 5.51e+01 1dcs b.82.2.1 61082 1np2A 436 5.56e+01 c.1.8.4 85944 2bkdN 134 5.59e+01 1dcs 311 5.63e+01 1dcs b.82.2.1 28124 1mzrA 296 5.67e+01 c.1.7.1 91500 1x3mA 415 5.68e+01 1cu0A 164 5.69e+01 1l92 d.2.1.3 36929 1iu9A 111 5.74e+01 c.78.2.1 90694 125l 164 5.75e+01 1l92 d.2.1.3 36672 1u2fA 90 5.84e+01 1u2fA d.58.7.1 39168 1y8cA 246 5.87e+01 1okrA 123 5.88e+01 a.4.5.39 93269 1l91 164 5.88e+01 1l92 d.2.1.3 36668 1l0jA 162 5.94e+01 d.2.1.3 84480 144l 164 5.98e+01 1l92 d.2.1.3 36893 1d3nA 164 5.98e+01 1l92 d.2.1.3 36898 1vm6A 228 6.01e+01 c.2.1.3,d.81.1.3 108876,108877 1uedA 406 6.15e+01 a.104.1.1 99256 1y6bA 366 6.19e+01 1nfgA 457 6.20e+01 b.92.1.3,c.1.9.6 85632,85633 1w28A 331 6.24e+01 2h26A 286 6.26e+01 1ky1A 162 6.38e+01 d.2.1.3 84477 139l 164 6.41e+01 1l92 d.2.1.3 36643 1cx7A 164 6.44e+01 1l92 d.2.1.3 36831 1gzqA 300 6.49e+01 b.1.1.2,d.19.1.1 70818,70819 1mg8A 78 6.65e+01 d.15.1.1 84958 2gvjA 491 6.68e+01 1z0sA 278 6.92e+01 1djeA 384 6.92e+01 1bs0A c.67.1.4 34491 1jflA 228 6.97e+01 c.78.2.1,c.78.2.1 71656,71657 177l 164 7.02e+01 1l92 d.2.1.3 36958 1cu2A 164 7.05e+01 1l92 d.2.1.3 36788 147l 164 7.10e+01 1l92 d.2.1.3 36864 1wznA 252 7.11e+01 1tla 164 7.15e+01 1l92 d.2.1.3 36887 1pc6A 146 7.24e+01 d.262.1.1 94430 1pqoA 164 7.32e+01 d.2.1.3 95026 1qtcA 162 7.34e+01 1l92 d.2.1.3 36972 1l62 164 7.35e+01 1l92 d.2.1.3 36628 233l 164 7.42e+01 1l92 d.2.1.3 36830 1px5A 349 7.43e+01 a.160.1.2,d.218.1.6 95277,95278 1w9hA 427 7.46e+01 1x4gA 109 7.59e+01 1nw1A 429 7.66e+01 d.144.1.8 86286 1cvkA 164 7.67e+01 1l92 d.2.1.3 36764 129l 164 7.69e+01 1l92 d.2.1.3 36660 1cu5A 164 7.77e+01 1l92 d.2.1.3 36901 1n8oE 142 7.87e+01 b.16.1.1 80303 1hf2A 210 7.92e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1l92 164 7.94e+01 1l92 d.2.1.3 36629 110l 164 7.97e+01 1l92 d.2.1.3 36684 102l 165 8.02e+01 1l92 d.2.1.3 36724 1mc0A 368 8.17e+01 d.110.2.1,d.110.2.1 78937,78938 1sluA 142 8.18e+01 1sluA b.16.1.1 23685 1l8qA 324 8.24e+01 a.4.12.2,c.37.1.20 77809,77810 1w66A 232 8.27e+01 145l 164 8.29e+01 1l92 d.2.1.3 36860 1ifgA 140 8.31e+01 1sluA b.16.1.1 62349 1y80A 210 8.42e+01 1f66C 128 8.58e+01 1aoiC a.22.1.1 16442 1zkeA 83 8.59e+01 247l 164 8.63e+01 1l92 d.2.1.3 36703 1lyf 164 8.63e+01 1l92 d.2.1.3 36719 1g0pA 164 8.75e+01 1l92 d.2.1.3 60185 1oaa 259 8.75e+01 1oaa c.2.1.2 29829 1sep 261 8.76e+01 1oaa c.2.1.2 29830 1r30A 369 8.78e+01 c.1.28.1 96895 1nxiA 132 8.81e+01 d.58.47.1 86381 224l 164 8.82e+01 1l92 d.2.1.3 36759 108l 164 8.83e+01 1l92 d.2.1.3 36669 1knvA 293 8.92e+01 c.52.1.7 68707 1t77A 414 8.98e+01 1apa 266 8.99e+01 1qi7A d.165.1.1 42205