# List of top-scoring protein chains for T0381.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mkmA 249 9.03e-29 a.4.5.33,d.110.2.2 79242,79243 2g7uA 257 2.26e-27 1yspA 181 6.86e-21 1td5A 202 2.61e-19 d.110.2.2 106767 1tf1A 198 3.44e-19 d.110.2.2 106826 1ysqA 193 1.36e-18 1ku9A 152 1.53e-03 a.4.5.36 77544 1q1hA 110 2.72e-03 a.4.5.41 95580 1ulyA 192 1.00e-02 2fbhA 146 2.32e-02 1i1gA 141 2.32e-02 a.4.5.32,d.58.4.2 65982,65983 1r22A 122 3.98e-02 a.4.5.5 104777 2a61A 145 6.02e-02 2ev0A 142 6.90e-02 1qbjA 81 7.62e-02 1qbjA a.4.5.19 16155 1on2A 142 7.99e-02 a.4.5.24,a.76.1.1 87103,87104 2acjA 66 8.31e-02 2ethA 154 9.30e-02 1qgpA 77 9.60e-02 1qbjA a.4.5.19 16158 1j75A 67 1.36e-01 a.4.5.19 62673 1r1tA 122 1.41e-01 a.4.5.5 104769 1ri7A 171 1.50e-01 a.4.5.32,d.58.4.2 97504,97505 1ft9A 222 1.54e-01 1ft9A a.4.5.4,b.82.3.1 16107,28131 1sfxA 109 1.56e-01 a.4.5.50 105505 2cfxA 144 1.80e-01 1j5yA 187 2.21e-01 a.4.5.1,d.94.2.1 71592,71593 2b0lA 102 2.22e-01 1r7jA 95 3.40e-01 a.4.5.49 104836 1xnpA 202 3.55e-01 1u2wA 122 3.87e-01 1o5lA 213 3.96e-01 b.82.3.2 92506 1wsuA 124 8.37e-01 1s3jA 155 9.85e-01 a.4.5.28 98437 1b1bA 140 1.05e+00 1bi0 a.4.5.24,a.76.1.1 16215,18421 1fx7A 230 1.15e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1lnwA 147 1.19e+00 a.4.5.28 78104 2fxaA 207 1.37e+00 1jhfA 202 1.43e+00 a.4.5.2,b.87.1.1 63057,63058 1hw1A 239 1.50e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1e2xA 243 1.51e+00 1e2xA a.4.5.6,a.78.1.1 16113,18443 2cg4A 152 1.52e+00 1jhhA 202 1.59e+00 a.4.5.2,b.87.1.1 63060,63061 1tw3A 360 1.73e+00 a.4.5.29,c.66.1.12 107373,107374 1lvaA 258 1.89e+00 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1v4rA 102 1.93e+00 1lj9A 144 2.00e+00 a.4.5.28 78035 2fnaA 357 2.19e+00 1o3sA 200 2.27e+00 a.4.5.4,b.82.3.2 86609,86610 1i5zA 209 2.74e+00 a.4.5.4,b.82.3.2 83669,83670 1g6nA 210 2.76e+00 2cgpA a.4.5.4,b.82.3.2 16100,28139 1hw5A 210 2.90e+00 2cgpA a.4.5.4,b.82.3.2 16098,28137 1bia 321 3.01e+00 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1o3tA 200 3.04e+00 a.4.5.4,b.82.3.2 86611,86612 1r1uA 106 3.18e+00 a.4.5.5 104771 2dbbA 151 3.27e+00 1f5tA 121 3.28e+00 1bi0 a.4.5.24,a.76.1.1 16203,18409 1njrA 284 3.38e+00 c.50.1.2 103858 1cgpA 205 3.57e+00 a.4.5.4,b.82.3.2 16096,28135 1i6xA 209 3.64e+00 a.4.5.4,b.82.3.2 83673,83674 1qzzA 374 3.69e+00 a.4.5.29,c.66.1.12 96719,96720 1bw6A 56 4.24e+00 1bw6A a.4.1.7 16052 1jgsA 138 4.66e+00 a.4.5.28 66683 1ruoA 209 4.88e+00 2cgpA a.4.5.4,b.82.3.2 16105,28144 1mzbA 136 4.90e+00 a.4.5.42 91497 2givA 295 4.98e+00 2dtr 226 5.46e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1hlvA 131 5.57e+00 a.4.1.7,a.4.1.7 65854,65855 1y0uA 96 5.78e+00 1xcvA 139 5.80e+00 1xn7A 78 5.93e+00 1je8A 82 6.02e+00 a.4.6.2 77108 1c0wA 225 6.09e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2f2eA 146 6.17e+00 2fu4A 83 6.58e+00 1g3tA 226 6.63e+00 a.4.5.24,a.76.1.1,b.34.1.2 65127,65128,65129 1p6rA 82 6.65e+00 a.4.5.39 94187 2tdx 226 7.53e+00 1bi0 a.4.5.24,a.76.1.1 16201,18407 1izmA 184 7.64e+00 a.199.1.1 90725 1p92A 226 7.66e+00 a.4.5.24,a.76.1.1,b.34.1.2 104085,104086,104087 1fwzA 226 8.20e+00 a.4.5.24,a.76.1.1,b.34.1.2 60077,60078,60079 1x42A 232 9.06e+00 1u0tA 307 9.65e+00 e.52.1.1 107567 2csbA 519 9.68e+00 1y3hA 307 9.70e+00 2drwA 363 9.96e+00 2gauA 232 1.02e+01 2cw8A 537 1.04e+01 1g3yA 226 1.05e+01 a.4.5.24,a.76.1.1,b.34.1.2 65136,65137,65138 1z91A 147 1.11e+01 1okrA 123 1.12e+01 a.4.5.39 93269 1sd6A 123 1.13e+01 a.4.5.39 98803 2bisA 440 1.13e+01 2bfwA 200 1.14e+01 1e32A 458 1.33e+01 1e32A b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 2fx0A 201 1.52e+01 1lea 84 1.52e+01 1lea a.4.5.2 16085 1wu7A 434 1.54e+01 2f2uA 402 1.65e+01 1x9nA 688 1.68e+01 1a04A 215 1.72e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1ww7A 160 1.74e+01 1k78A 149 1.81e+01 a.4.1.5,a.4.1.5 68255,68256 1jcuA 208 1.86e+01 d.115.1.1 71634 2f22A 144 1.88e+01 2fbkA 181 1.91e+01 1uz5A 402 1.91e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1rniA 216 2.04e+01 d.264.1.2 97663 1oryA 130 2.10e+01 a.24.19.1 93466 1orjA 130 2.12e+01 a.24.19.1 93456 1lkvX 232 2.13e+01 a.118.14.1 73980 1zlkA 95 2.19e+01 1rxtA 496 2.21e+01 1ypwA 806 2.22e+01 1r7rA 816 2.26e+01 b.52.2.3,c.37.1.20,c.37.1.20,d.31.1.1 97203,97204,97205,97206 1yyvA 131 2.33e+01 2a2cA 478 2.35e+01 1wdvA 152 2.36e+01 1p4xA 250 2.42e+01 a.4.5.28,a.4.5.28 87784,87785 1id0A 152 2.63e+01 d.122.1.3 66111 1jc4A 148 2.68e+01 1jc4A d.32.1.4 62863 1res 43 2.79e+01 1ret a.4.1.2 16023 2ciwA 299 2.81e+01 2bwrA 401 2.87e+01 1zljA 78 2.89e+01 1avaA 403 2.97e+01 1jdc b.71.1.1,c.1.8.1 27797,28784 1v30A 124 2.98e+01 1k9vF 201 3.01e+01 c.23.16.1 68365 1kxjA 205 3.15e+01 c.23.16.1 73153 1m7kA 99 3.18e+01 a.7.7.1 74573 1ykdA 398 3.26e+01 2atxA 194 3.29e+01 1vrmA 325 3.29e+01 1h1yA 228 3.40e+01 c.1.2.2 76506 1oltA 457 3.46e+01 c.1.28.2 93334 1fb6A 105 3.50e+01 1thx c.47.1.1 32739 1uzdC 134 3.57e+01 1gl8A 104 3.60e+01 c.47.1.1 65290 1z72A 225 3.62e+01 2d28C 149 3.65e+01 2a6bA 234 3.70e+01 1bjz 207 3.86e+01 2tct a.4.1.9,a.121.1.1 16065,19242 1qpiA 203 3.89e+01 2tct a.4.1.9,a.121.1.1 16072,19249 1zx4A 192 3.90e+01 2tct 207 3.91e+01 2tct a.4.1.9,a.121.1.1 16063,19240 1j4nA 271 3.93e+01 f.19.1.1 71510 1q2yA 140 4.00e+01 d.108.1.1 95655 1a6i 217 4.09e+01 2tct a.4.1.9,a.121.1.1 16066,19243 2bjcA 62 4.13e+01 1fzpB 123 4.21e+01 1fznD a.4.5.28 19008 1ffvC 287 4.28e+01 1qj2C d.87.2.1,d.145.1.3 40223,41754 1ffuC 287 4.35e+01 1qj2C d.87.2.1,d.145.1.3 40225,41756 2frhA 127 4.36e+01 1kelH 218 4.44e+01 1igtB b.1.1.1,b.1.1.2 20113,21143 1ro2A 216 4.47e+01 d.264.1.2 97665 1ylfA 149 4.53e+01 2g9iA 249 4.60e+01 1z05A 429 4.60e+01 2cunA 410 4.68e+01 1ttzA 87 4.75e+01 c.47.1.1 107309 2bneA 241 4.84e+01 2gf5A 191 4.89e+01 2fuzA 377 4.91e+01 2fv1A 377 4.92e+01 1z6rA 406 5.05e+01 2bndA 241 5.14e+01 1sfuA 75 5.23e+01 a.4.5.19 105503 2trt 217 5.24e+01 2tct a.4.1.9,a.121.1.1 16064,19241 1jn1A 158 5.32e+01 d.79.5.1 71754 1vh8A 170 5.39e+01 d.79.5.1 100647 1esc 306 5.43e+01 1esc c.23.10.1 31334 1yt5A 258 5.49e+01 1h2vZ 156 5.49e+01 d.58.7.1 76595 1x4hA 111 5.56e+01 1a6s 87 5.69e+01 1a6s a.61.1.4 18134 2bgcA 238 5.72e+01 1oyiA 82 5.72e+01 a.4.5.19 93729 2eshA 118 5.84e+01 1xxfC 142 5.97e+01 1lccA 51 5.97e+01 1pru a.35.1.5 17110 2d27A 149 5.98e+01 1n6zA 105 6.07e+01 d.263.1.1 85369 2h6bA 250 6.08e+01 1mc0A 368 6.11e+01 d.110.2.1,d.110.2.1 78937,78938 2cmxA 118 6.12e+01 1tqyB 415 6.13e+01 c.95.1.1,c.95.1.1 107247,107248 1tie 172 6.20e+01 1wba b.42.4.1 25592 1gtmA 419 6.25e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1pot 325 6.25e+01 1pot c.94.1.1 35807 1uxc 65 6.26e+01 1uxc a.35.1.5 17119 1poy1 323 6.37e+01 1pot 1vmkA 277 6.40e+01 1lwuC 323 6.41e+01 d.171.1.1,h.1.8.1 74312,74313 1xs9A 132 6.47e+01 1b0nA 111 6.52e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 2fnpA 124 6.63e+01 2beoA 236 6.64e+01 2cygA 312 6.67e+01 1gkuB 1054 6.68e+01 c.37.1.16,c.37.1.16,e.10.1.1 65257,65258,65259 1lqc 56 6.69e+01 1pru a.35.1.5 17109 1k1xA 659 6.70e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1gl9B 1054 6.70e+01 c.37.1.16,c.37.1.16,e.10.1.1 65291,65292,65293 1gkpA 458 6.74e+01 b.92.1.3,c.1.9.6 70231,70232 1omiA 248 6.79e+01 b.82.3.3,a.4.5.4 87079,87080 1qasA 622 6.94e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17340,23157,29585 1bl0A 129 6.94e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1djxA 624 6.95e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1ojuA 294 6.97e+01 c.2.1.5,d.162.1.1 103990,103991 1itpA 77 7.06e+01 d.58.3.2 66371 1xsvA 113 7.12e+01 1fps 348 7.37e+01 1uby a.128.1.1 19436 2aehA 369 7.37e+01 2al6A 375 7.49e+01 2gbsA 145 7.50e+01 1kczA 413 7.56e+01 c.1.11.2,d.54.1.1 68451,68452 1cjgA 62 7.65e+01 1pru a.35.1.5 17112 2av5A 120 7.69e+01 1dbyA 107 7.75e+01 1thx c.47.1.1 32734 1l1mA 62 7.80e+01 a.35.1.5 73474 1xpvA 78 7.86e+01 1v5iB 76 7.92e+01 1ubx 367 7.96e+01 1uby a.128.1.1 19439 2az4A 429 8.05e+01 1uby 367 8.20e+01 1uby a.128.1.1 19435 1wubA 178 8.29e+01 1eyhA 144 8.49e+01 1eduA a.118.9.1 19214 1qvrA 854 8.54e+01 a.174.1.1,c.37.1.20,c.37.1.20 96432,96433,96434 1eduA 149 8.61e+01 1eduA a.118.9.1 19215 2cxcA 144 8.65e+01 1y56A 493 8.67e+01 1h0aA 158 8.72e+01 a.118.9.1 76434 1h6zA 913 8.82e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 2fb2A 340 8.99e+01