# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0375/ # command:# Making conformation for sequence T0375 numbered 1 through 296 Created new target T0375 from T0375.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0375/ # command:# reading script from file T0375.t04.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rkd/T0375-1rkd-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1rkd expands to /projects/compbio/data/pdb/1rkd.pdb.gz 1rkd:Warning: there is no chain 1rkd will retry with 1rkdA # T0375 read from 1rkd/T0375-1rkd-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1rkd read from 1rkd/T0375-1rkd-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1rkd to template set # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINE 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNG # choosing archetypes in rotamer library T0375 103 :SGSRTILYYDRSLPDVSATDFEKVD 1rkd 105 :EGENVIGIHAGANAALSPALVEAQR T0375 128 :LTQFKWIHIEGRNASEQ 1rkd 132 :IANASALLMQLESPLES T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEVE 1rkd 150 :MAAAKIAHQNKTIVALNPAPARELPDE T0375 180 :LFGYGDVVFVSKDVAKHL 1rkd 177 :LLALVDIITPNETEAEKL T0375 198 :GF 1rkd 196 :GI T0375 200 :QSAEEALRGLYGRV 1rkd 203 :EDAAKAAQVLHEKG T0375 216 :GAVLVCAWAEEGADALG 1rkd 217 :IRTVLITLGSRGVWASV T0375 234 :DGKLLHSDAF 1rkd 234 :NGEGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPS Number of specific fragments extracted= 10 number of extra gaps= 0 total=10 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1565306615.pdb -s /var/tmp/to_scwrl_1565306615.seq -o /var/tmp/from_scwrl_1565306615.pdb > /var/tmp/scwrl_1565306615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1565306615.pdb Number of alignments=1 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fv7A/T0375-2fv7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2fv7A expands to /projects/compbio/data/pdb/2fv7.pdb.gz 2fv7A:Skipped atom 67, because occupancy 0.35 <= existing 0.650 in 2fv7A Skipped atom 69, because occupancy 0.350 <= existing 0.650 in 2fv7A Skipped atom 71, because occupancy 0.350 <= existing 0.650 in 2fv7A Skipped atom 73, because occupancy 0.350 <= existing 0.650 in 2fv7A Skipped atom 1002, because occupancy 0.350 <= existing 0.650 in 2fv7A Skipped atom 1004, because occupancy 0.350 <= existing 0.650 in 2fv7A # T0375 read from 2fv7A/T0375-2fv7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fv7A read from 2fv7A/T0375-2fv7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2fv7A to template set # found chain 2fv7A in template set T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINE 2fv7A 17 :AVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNN T0375 103 :SGSRTILYYDRSLPDVSATDFEKVD 2fv7A 116 :EGQNIIVIVAGANLLLNTEDLRAAA T0375 128 :LTQFKWIHIEGRNASEQ 2fv7A 143 :ISRAKVMVCQLEITPAT T0375 145 :VKMLQRIDAHNTRQPPEQ 2fv7A 161 :LEALTMARRSGVKTLFNP T0375 166 :VSVEVE 2fv7A 179 :APAIAD T0375 177 :LF 2fv7A 185 :LD T0375 179 :QLFGYGDVVFVSKDVAKHL 2fv7A 188 :QFYTLSDVFCCNESEAEIL T0375 198 :GF 2fv7A 208 :GL T0375 200 :QSAEEALRGLYGRV 2fv7A 215 :ADAGEAALVLLKRG T0375 216 :GAVLVCAWAEEGADALGPDG 2fv7A 229 :CQVVIITLGAEGCVVLSQTE T0375 236 :KLLHSDAF 2fv7A 250 :EPKHIPTE T0375 245 :PPRVVDTLGAGDTFNASVIFSLS 2fv7A 258 :KVKAVDTTGAGDSFVGALAFYLA T0375 268 :QGRSVQEALRFGCQVAGKKCGLQGFDG 2fv7A 283 :PNLSLEDMLNRSNFIAAVSVQAAGTQS Number of specific fragments extracted= 13 number of extra gaps= 0 total=23 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_2054306628.pdb -s /var/tmp/to_scwrl_2054306628.seq -o /var/tmp/from_scwrl_2054306628.pdb > /var/tmp/scwrl_2054306628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2054306628.pdb Number of alignments=2 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2dcnA/T0375-2dcnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2dcnA expands to /projects/compbio/data/pdb/2dcn.pdb.gz 2dcnA:Skipped atom 942, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 944, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 946, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 948, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 950, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 952, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 954, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 956, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 958, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1126, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1128, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1130, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1132, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1134, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1136, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1138, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1140, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1142, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1448, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1450, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1452, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1454, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1456, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1458, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1460, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1462, because occupancy 0.500 <= existing 0.500 in 2dcnA Skipped atom 1464, because occupancy 0.500 <= existing 0.500 in 2dcnA # T0375 read from 2dcnA/T0375-2dcnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2dcnA read from 2dcnA/T0375-2dcnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2dcnA to template set # found chain 2dcnA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2dcnA)A2 Warning: unaligning (T0375)L289 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2dcnA)R290 Warning: unaligning (T0375)Q290 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2dcnA)R290 T0375 3 :QILCVGLVVLDVISL 2dcnA 3 :KLITLGEILIEFNAL T0375 23 :KEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASG 2dcnA 18 :SPGPLRHVSYFEKHVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVP T0375 105 :SRTILYYDR 2dcnA 102 :SESIYYRKG T0375 114 :SLPDVSATDFEKVDLTQFKWIHIE 2dcnA 112 :AGSKLSPEDVDEEYVKSADLVHSS T0375 140 :NASEQVKMLQRIDAHNTRQPPEQKIRVSVEV 2dcnA 141 :ISSTAKEAVYKAFEIASNRSFDTNIRLKLWS T0375 171 :EKPREELFQLFGY 2dcnA 173 :EEAKREILKLLSK T0375 184 :GDVVFVSKDVAKHL 2dcnA 188 :LKFLITDTDDSKII T0375 198 :GFQSAEEALRGLYGR 2dcnA 203 :GESDPDKAAKAFSDY T0375 216 :GAVLVCAWAEEGADALG 2dcnA 218 :AEIIVMKLGPKGAIVYY T0375 234 :DGKLLHSDAF 2dcnA 235 :DGKKYYSSGY T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 2dcnA 245 :QVPVEDVTGAGDALGGTFLSLYYKGFEMEKALDYAIVASTLNVM T0375 291 :GFD 2dcnA 291 :GDQ Number of specific fragments extracted= 12 number of extra gaps= 1 total=35 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_546389569.pdb -s /var/tmp/to_scwrl_546389569.seq -o /var/tmp/from_scwrl_546389569.pdb > /var/tmp/scwrl_546389569.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_546389569.pdb Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2afbA/T0375-2afbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2afbA expands to /projects/compbio/data/pdb/2afb.pdb.gz 2afbA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0375 read from 2afbA/T0375-2afbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2afbA read from 2afbA/T0375-2afbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2afbA to template set # found chain 2afbA in template set Warning: unaligning (T0375)Q33 because of BadResidue code BAD_PEPTIDE in next template residue (2afbA)D28 Warning: unaligning (T0375)R34 because of BadResidue code BAD_PEPTIDE at template residue (2afbA)D28 Warning: unaligning (T0375)I94 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2afbA)Y88 Warning: unaligning (T0375)A95 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2afbA)Y88 Warning: unaligning (T0375)V189 because of BadResidue code BAD_PEPTIDE in next template residue (2afbA)N194 Warning: unaligning (T0375)S190 because of BadResidue code BAD_PEPTIDE at template residue (2afbA)N194 Warning: unaligning (T0375)P246 because of BadResidue code BAD_PEPTIDE in next template residue (2afbA)H271 Warning: unaligning (T0375)R247 because of BadResidue code BAD_PEPTIDE at template residue (2afbA)H271 T0375 1 :GSQILCVGLVVLDVISL 2afbA 0 :HMKVVTFGEIMLRLSPP T0375 19 :DKY 2afbA 17 :DHK T0375 26 :SEIRCLS 2afbA 20 :RIFQTDS T0375 35 :WQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 2afbA 29 :VTYGGAEANVAAFLAQMGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDYIARGGN T0375 91 :SVP 2afbA 84 :RIG T0375 96 :TVIINEASGSRTILYYDR 2afbA 89 :FLEIGASQRPSKVVYDRA T0375 114 :SLPDVSATDFEKVD 2afbA 109 :AISEAKREDFDWEK T0375 128 :LTQFKWIHIEGRNASEQ 2afbA 124 :LDGARWFHFSGITPPLG T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEV 2afbA 148 :EDALKVANEKGVTVSCDLNYRARLWT T0375 171 :EKPREELFQLFGYGDVVF 2afbA 175 :EEAQKVMIPFMEYVDVLI T0375 191 :KDVAKHL 2afbA 195 :EEDIEKV T0375 198 :GF 2afbA 203 :GI T0375 200 :QSAEEALRGLYGRV 2afbA 219 :EAYAKIAEEVTRKY T0375 215 :KGAVLVCAWAE 2afbA 233 :NFKTVGITLRE T0375 228 :ADALG 2afbA 254 :VMVFE T0375 234 :DGKLLHSDAF 2afbA 259 :NGQPHFSNRY T0375 245 :P 2afbA 269 :E T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2afbA 272 :IVDRVGAGDSFAGALIYGSLMGFDSQKKAEFAAAASCLKHTIPGD Number of specific fragments extracted= 18 number of extra gaps= 4 total=53 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_234799752.pdb -s /var/tmp/to_scwrl_234799752.seq -o /var/tmp/from_scwrl_234799752.pdb > /var/tmp/scwrl_234799752.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_234799752.pdb Number of alignments=4 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tyyA/T0375-1tyyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1tyyA expands to /projects/compbio/data/pdb/1tyy.pdb.gz 1tyyA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0375 read from 1tyyA/T0375-1tyyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tyyA read from 1tyyA/T0375-1tyyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1tyyA to template set # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISL 1tyyA 6 :KVWVIGDASVDLVPE T0375 23 :KED 1tyyA 21 :KQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 108 :ILYYDR 1tyyA 99 :FTYLVH T0375 114 :SLPDVSATDFEK 1tyyA 107 :ADTYVSPQDLPP T0375 128 :LTQFKWIHIE 1tyyA 119 :FRQYEWFYFS T0375 140 :NASEQ 1tyyA 133 :TDRPA T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 142 :LEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSA 1tyyA 198 :GASHW T0375 208 :GLYGRV 1tyyA 208 :YLRDLG T0375 216 :GAVLVCAWAEEGADALG 1tyyA 214 :CDTTIISLGADGALLIT T0375 234 :DGKLLHSDAF 1tyyA 231 :AEGEFHFPAP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1tyyA 241 :RVDVVDTTGAGDAFVGGLLFTLSR T0375 269 :GRS 1tyyA 267 :CWD T0375 272 :VQEALRFGCQVAGKKCGLQGFD 1tyyA 273 :LAEAISNANACGAMAVTAKGAM Number of specific fragments extracted= 16 number of extra gaps= 0 total=69 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1498387408.pdb -s /var/tmp/to_scwrl_1498387408.seq -o /var/tmp/from_scwrl_1498387408.pdb > /var/tmp/scwrl_1498387408.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1498387408.pdb Number of alignments=5 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2abqA/T0375-2abqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2abqA expands to /projects/compbio/data/pdb/2abq.pdb.gz 2abqA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0375 read from 2abqA/T0375-2abqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2abqA read from 2abqA/T0375-2abqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2abqA to template set # found chain 2abqA in template set T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDKY 2abqA 8 :NPSIDYIVQVENF T0375 23 :KEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 21 :QQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVF 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEV T0375 89 :TGSVPIATVIIN 2abqA 84 :EGDTRINVKIKG T0375 103 :SGSRTI 2abqA 96 :KQETEL T0375 112 :DRSLPDVSATDFEKVD 2abqA 102 :NGTAPLIKKEHVQALL T0375 128 :LTQF 2abqA 120 :LTEL T0375 132 :KWIHIEGRNASEQ 2abqA 127 :DVLVLAGSVPQAM T0375 145 :VKMLQRIDAHNTRQPPEQK 2abqA 145 :RSMTQIAKERGAFVAVDTS T0375 174 :REELFQLFGY 2abqA 164 :GEALHEVLAA T0375 184 :GDVVFVSKDVAKHL 2abqA 175 :PSFIKPNHHELSEL T0375 198 :GF 2abqA 190 :SK T0375 200 :QSAEEA 2abqA 194 :ASIEDA T0375 206 :LRGLYGRV 2abqA 203 :VQRLIGEG T0375 216 :GAVLVCAWAEEGADALG 2abqA 211 :IESILVSFAGDGALFAS T0375 234 :DGKLLHSDAF 2abqA 228 :AEGMFHVNVP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 238 :SGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 18 number of extra gaps= 0 total=87 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1631596365.pdb -s /var/tmp/to_scwrl_1631596365.seq -o /var/tmp/from_scwrl_1631596365.pdb > /var/tmp/scwrl_1631596365.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1631596365.pdb Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2absA/T0375-2absA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2absA expands to /projects/compbio/data/pdb/2abs.pdb.gz 2absA:Skipped atom 697, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 699, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 701, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 703, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 705, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 707, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 709, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 711, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 713, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 884, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 886, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 888, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 890, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 892, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 894, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 896, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 898, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 900, because occupancy 0.440 <= existing 0.560 in 2absA Skipped atom 1191, because occupancy 0.350 <= existing 0.650 in 2absA Skipped atom 1193, because occupancy 0.350 <= existing 0.650 in 2absA Skipped atom 1195, because occupancy 0.350 <= existing 0.650 in 2absA Skipped atom 1197, because occupancy 0.350 <= existing 0.650 in 2absA Skipped atom 1199, because occupancy 0.350 <= existing 0.650 in 2absA Skipped atom 1201, because occupancy 0.350 <= existing 0.650 in 2absA Skipped atom 1230, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1231, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1233, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1234, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1236, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1237, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1239, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1240, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1242, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1243, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1245, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1246, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1248, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 1249, because occupancy 0.270 <= existing 0.460 in 2absA Skipped atom 2088, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2090, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2092, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2094, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2096, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2098, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2100, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2102, because occupancy 0.410 <= existing 0.590 in 2absA Skipped atom 2177, because occupancy 0.330 <= existing 0.670 in 2absA Skipped atom 2179, because occupancy 0.330 <= existing 0.670 in 2absA Skipped atom 2345, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2347, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2349, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2351, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2353, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2355, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2357, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2359, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2361, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2363, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2365, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2367, because occupancy 0.260 <= existing 0.740 in 2absA Skipped atom 2467, because occupancy 0.430 <= existing 0.570 in 2absA Skipped atom 2469, because occupancy 0.430 <= existing 0.570 in 2absA Skipped atom 2471, because occupancy 0.430 <= existing 0.570 in 2absA Skipped atom 2527, because occupancy 0.370 <= existing 0.630 in 2absA Skipped atom 2529, because occupancy 0.370 <= existing 0.630 in 2absA Skipped atom 2531, because occupancy 0.370 <= existing 0.630 in 2absA Skipped atom 2533, because occupancy 0.370 <= existing 0.630 in 2absA Skipped atom 2854, because occupancy 0.350 <= existing 0.350 in 2absA Skipped atom 2855, because occupancy 0.300 <= existing 0.350 in 2absA Skipped atom 2857, because occupancy 0.350 <= existing 0.350 in 2absA Skipped atom 2858, because occupancy 0.300 <= existing 0.350 in 2absA # T0375 read from 2absA/T0375-2absA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2absA read from 2absA/T0375-2absA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2absA to template set # found chain 2absA in template set Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)K163 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)F199 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 Warning: unaligning (T0375)I295 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2absA)T359 T0375 1 :GSQILCVGLVVLDVISLVD 2absA 12 :PMRVFAIGNPILDLVAEVP T0375 23 :KED 2absA 40 :KRG T0375 27 :EI 2absA 43 :DA T0375 29 :RCLSQRWQRGGNASNSCTILSLL 2absA 59 :DQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 2absA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 2absA 133 :EKERTLCTHLGACGSFR T0375 120 :ATDF 2absA 151 :PEDW T0375 125 :KVDLTQFKWIHIEGR 2absA 155 :TTFASGALIFYATAY T0375 140 :NASEQVKMLQRIDAH 2absA 174 :TPKNALEVAGYAHGI T0375 155 :NTRQPPE 2absA 190 :NAIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :G 2absA 235 :N T0375 200 :QSAEEALRGLYGR 2absA 250 :EHAVEVCTGALRL T0375 216 :GAVLVCAWAEEGADAL 2absA 272 :TKLVVMTRGHNPVIAA T0375 232 :GPDGKLLHS 2absA 290 :TADGTVVVH T0375 241 :DAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 2absA 303 :PVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS T0375 294 :G 2absA 357 :S Number of specific fragments extracted= 18 number of extra gaps= 3 total=105 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1308581514.pdb -s /var/tmp/to_scwrl_1308581514.seq -o /var/tmp/from_scwrl_1308581514.pdb > /var/tmp/scwrl_1308581514.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1308581514.pdb Number of alignments=7 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f02A/T0375-2f02A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2f02A expands to /projects/compbio/data/pdb/2f02.pdb.gz 2f02A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0375 read from 2f02A/T0375-2f02A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f02A read from 2f02A/T0375-2f02A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2f02A to template set # found chain 2f02A in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2f02A)S0 T0375 3 :QILCVG 2f02A 1 :LIVTVT T0375 9 :LVVLDVISLVDKY 2f02A 8 :NPSIDISYLLDHL T0375 23 :KEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2f02A 21 :KLDTVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVF 2f02A 61 :GFHGAFIANELKKANIPQAFTSI T0375 89 :TGSVPIATVIIN 2f02A 84 :KEETRDSIAILH T0375 103 :SGSRTILYYDR 2f02A 96 :EGNQTEILEAG T0375 116 :PDVSATDFEKVD 2f02A 107 :PTVSPEEISNFL T0375 128 :LTQFKWIHIEGRNASEQ 2f02A 125 :IKQAEIVTISGSLAKGL T0375 145 :VKMLQRIDAHNTRQPPEQK 2f02A 147 :QELVQKAHAQEVKVLLDTS T0375 171 :E 2f02A 166 :G T0375 175 :EELFQLFGY 2f02A 167 :DSLRQVLQG T0375 184 :GDVVFVSKDVAKHL 2f02A 179 :PYLIKPNLEELEGL T0375 198 :GF 2f02A 194 :GQ T0375 200 :QSAEEALRGLYG 2f02A 200 :NPLAAVQTALTK T0375 212 :RVRKGAVLVCAWAEEGADALG 2f02A 213 :MFAGIEWIVISLGKDGAIAKH T0375 234 :DGKLLHSDA 2f02A 234 :HDQFYRVKI T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 2f02A 243 :PTIQAKNPVGSGDATIAGLAYGLAKDAPAAELLKWGMAAGMANAQE Number of specific fragments extracted= 17 number of extra gaps= 0 total=122 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_354367395.pdb -s /var/tmp/to_scwrl_354367395.seq -o /var/tmp/from_scwrl_354367395.pdb > /var/tmp/scwrl_354367395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_354367395.pdb Number of alignments=8 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2awdA/T0375-2awdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2awdA expands to /projects/compbio/data/pdb/2awd.pdb.gz 2awdA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0375 read from 2awdA/T0375-2awdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2awdA read from 2awdA/T0375-2awdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2awdA to template set # found chain 2awdA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2awdA)S0 Warning: unaligning (T0375)V11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2awdA)I11 Warning: unaligning (T0375)L12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2awdA)I11 Warning: unaligning (T0375)E137 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2awdA)G135 Warning: unaligning (T0375)G138 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2awdA)G135 Warning: unaligning (T0375)Q200 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2awdA)E199 T0375 3 :QILCVG 2awdA 1 :LIVTVT T0375 9 :LV 2awdA 8 :NP T0375 13 :DVISLVDKY 2awdA 12 :DISYLLDHL T0375 23 :KEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2awdA 21 :KLDTVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVF 2awdA 61 :GFHGAFIANELKKANIPQAFTSI T0375 89 :TGSVPIATVIIN 2awdA 84 :KEETRDSIAILH T0375 103 :SGSRTILYYDR 2awdA 96 :EGNQTEILEAG T0375 116 :PDVSATDFEKVD 2awdA 107 :PTVSPEEISNFL T0375 128 :LTQFKWIHI 2awdA 125 :IKQAEIVTI T0375 139 :RNASEQ 2awdA 136 :SLAKGL T0375 145 :VKMLQRIDAHNTRQPPEQK 2awdA 147 :QELVQKAHAQEVKVLLDTS T0375 171 :E 2awdA 166 :G T0375 175 :EELFQLFGY 2awdA 167 :DSLRQVLQG T0375 184 :GDVVFVSKDVAKHL 2awdA 179 :PYLIKPNLEELEGL T0375 198 :GF 2awdA 194 :GQ T0375 201 :SAEEALRGLYG 2awdA 200 :NPLAAVQTALT T0375 212 :RVRKGAVLVCAWAEEGADALG 2awdA 213 :MFAGIEWIVISLGKDGAIAKH T0375 234 :DGKLLHSDA 2awdA 234 :HDQFYRVKI T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQ 2awdA 243 :PTIQAKNPVGSGDATIAGLAYGLAKDAPAAELLKWGMAAGMANAQER Number of specific fragments extracted= 19 number of extra gaps= 3 total=141 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_25222833.pdb -s /var/tmp/to_scwrl_25222833.seq -o /var/tmp/from_scwrl_25222833.pdb > /var/tmp/scwrl_25222833.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_25222833.pdb Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ajrA/T0375-2ajrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2ajrA expands to /projects/compbio/data/pdb/2ajr.pdb.gz 2ajrA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 920, because occupancy 0.500 <= existing 0.500 in 2ajrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 924, because occupancy 0.500 <= existing 0.500 in 2ajrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 926, because occupancy 0.500 <= existing 0.500 in 2ajrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 928, because occupancy 0.500 <= existing 0.500 in 2ajrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 930, because occupancy 0.500 <= existing 0.500 in 2ajrA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0375 read from 2ajrA/T0375-2ajrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ajrA read from 2ajrA/T0375-2ajrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2ajrA to template set # found chain 2ajrA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2ajrA)H0 Warning: unaligning (T0375)V11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ajrA)L11 Warning: unaligning (T0375)L12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ajrA)L11 T0375 3 :QILCVG 2ajrA 1 :MVLTVT T0375 9 :LV 2ajrA 8 :NP T0375 13 :DVISLVDKY 2ajrA 12 :DREIFIEDF T0375 23 :KEDSEIRCLSQ 2ajrA 21 :QVNRLYRINDL T0375 34 :RWQRGGNASNSCTILSLLGAPCAFMGSMA 2ajrA 35 :QMSPGGKGINVSIALSKLGVPSVATGFVG T0375 64 :GHVADFVLDDLRRY 2ajrA 64 :GYMGKILVEELRKI T0375 79 :VDLRYTVF 2ajrA 81 :ITTNFVYV T0375 89 :TGSVPIATVIINEASGSRTILYYDRS 2ajrA 89 :EGETRENIEIIDEKNKTITAINFPGP T0375 117 :DVSATDFEKVD 2ajrA 115 :DVTDMDVNHFL T0375 128 :LTQFKWIHIEGRNASEQ 2ajrA 132 :LSKVDCVVISGSIPPGV T0375 145 :VKMLQRIDAHNTRQPPEQK 2ajrA 154 :NELVRLARERGVFVFVEQT T0375 174 :REELFQLF 2ajrA 173 :PRLLERIY T0375 182 :GYGDVVFVS 2ajrA 184 :EFPNVVKPD T0375 197 :L 2ajrA 193 :L T0375 198 :GF 2ajrA 195 :GN T0375 200 :QSAEEALRGLYGR 2ajrA 209 :DDYVKLAEKLAEK T0375 216 :GAVLVCAWAEEGADALG 2ajrA 222 :SQVSVVSYEVKNDIVAT T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 2ajrA 239 :REGVWLIRSKEEIDTSHLLGAGDAYVAGMVYYFIK T0375 269 :GRSVQEALRFGCQVAGKKCGLQG 2ajrA 275 :GANFLEMAKFGFASALAATRRKE Number of specific fragments extracted= 19 number of extra gaps= 1 total=160 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1245644427.pdb -s /var/tmp/to_scwrl_1245644427.seq -o /var/tmp/from_scwrl_1245644427.pdb > /var/tmp/scwrl_1245644427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1245644427.pdb Number of alignments=10 # command:# reading script from file T0375.t06.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rkd/T0375-1rkd-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 1rkd/T0375-1rkd-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1rkd read from 1rkd/T0375-1rkd-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV T0375 101 :EASGSRTILYYDRSLPDVSATDFEKVD 1rkd 103 :NGEGENVIGIHAGANAALSPALVEAQR T0375 128 :LTQFKWIHIEGRNA 1rkd 132 :IANASALLMQLESP T0375 142 :SEQVKMLQRIDAHNTRQPPEQKIR 1rkd 147 :ESVMAAAKIAHQNKTIVALNPAPA T0375 171 :EKPRE 1rkd 171 :RELPD T0375 179 :QLFGYGDVVFVSKDVAKHL 1rkd 176 :ELLALVDIITPNETEAEKL T0375 198 :GFQ 1rkd 196 :GIR T0375 201 :SAEEALRGLYGRVRKGA 1rkd 201 :NDEDAAKAAQVLHEKGI T0375 218 :VLVCAWAEEGADALGPD 1rkd 219 :TVLITLGSRGVWASVNG T0375 236 :KLLHSDAF 1rkd 236 :EGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV Number of specific fragments extracted= 11 number of extra gaps= 0 total=171 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1812247775.pdb -s /var/tmp/to_scwrl_1812247775.seq -o /var/tmp/from_scwrl_1812247775.pdb > /var/tmp/scwrl_1812247775.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1812247775.pdb Number of alignments=11 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fv7A/T0375-2fv7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2fv7A/T0375-2fv7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fv7A read from 2fv7A/T0375-2fv7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fv7A in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 2fv7A 16 :AAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIV T0375 101 :EASGSRTILYYDRSLPDVSATDFEKVD 2fv7A 114 :NNEGQNIIVIVAGANLLLNTEDLRAAA T0375 128 :LTQFKWIHIEGRNA 2fv7A 143 :ISRAKVMVCQLEIT T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 2fv7A 158 :ATSLEALTMARRSGVKTLFNP T0375 169 :E 2fv7A 182 :I T0375 171 :EKPRE 2fv7A 183 :ADLDP T0375 179 :QLFGYGDVVFVSKDVAKHL 2fv7A 188 :QFYTLSDVFCCNESEAEIL T0375 198 :GFQ 2fv7A 208 :GLT T0375 201 :SAEEALRGLYGRVRKGA 2fv7A 213 :SAADAGEAALVLLKRGC T0375 218 :VLVCAWAEEGADALGPDG 2fv7A 231 :VVIITLGAEGCVVLSQTE T0375 236 :KLLHSDAF 2fv7A 250 :EPKHIPTE T0375 245 :PPRVVDTLGAGDTFNASVIFSLS 2fv7A 258 :KVKAVDTTGAGDSFVGALAFYLA T0375 268 :QGRSVQEALRFGCQVAGKKCGLQGFDGIV 2fv7A 283 :PNLSLEDMLNRSNFIAAVSVQAAGTQSSY Number of specific fragments extracted= 13 number of extra gaps= 0 total=184 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_487073847.pdb -s /var/tmp/to_scwrl_487073847.seq -o /var/tmp/from_scwrl_487073847.pdb > /var/tmp/scwrl_487073847.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_487073847.pdb Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2afbA/T0375-2afbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2afbA/T0375-2afbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2afbA read from 2afbA/T0375-2afbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2afbA in template set Warning: unaligning (T0375)Q33 because of BadResidue code BAD_PEPTIDE in next template residue (2afbA)D28 Warning: unaligning (T0375)R34 because of BadResidue code BAD_PEPTIDE at template residue (2afbA)D28 Warning: unaligning (T0375)I94 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2afbA)Y88 Warning: unaligning (T0375)A95 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2afbA)Y88 Warning: unaligning (T0375)V189 because of BadResidue code BAD_PEPTIDE in next template residue (2afbA)N194 Warning: unaligning (T0375)S190 because of BadResidue code BAD_PEPTIDE at template residue (2afbA)N194 Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2afbA)N217 Warning: unaligning (T0375)P246 because of BadResidue code BAD_PEPTIDE in next template residue (2afbA)H271 Warning: unaligning (T0375)R247 because of BadResidue code BAD_PEPTIDE at template residue (2afbA)H271 T0375 1 :GSQILCVGLVVLDVI 2afbA 0 :HMKVVTFGEIMLRLS T0375 22 :PKEDSEIR 2afbA 15 :PPDHKRIF T0375 30 :CLS 2afbA 24 :TDS T0375 35 :WQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 2afbA 29 :VTYGGAEANVAAFLAQMGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDYIARGGN T0375 91 :SVP 2afbA 84 :RIG T0375 96 :TVIINEASGSRTILYYDR 2afbA 89 :FLEIGASQRPSKVVYDRA T0375 114 :SLPDVSATDFEKVD 2afbA 109 :AISEAKREDFDWEK T0375 128 :LTQFKWIHIEGRNAS 2afbA 124 :LDGARWFHFSGITPP T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 2afbA 146 :ILEDALKVANEKGVTVSCDLNYRARLWT T0375 171 :EKPREELFQLFGYGDVVF 2afbA 175 :EEAQKVMIPFMEYVDVLI T0375 191 :KDVAKHL 2afbA 195 :EEDIEKV T0375 198 :GFQ 2afbA 203 :GIS T0375 202 :AEEALRGLYGRVRK 2afbA 218 :REAYAKIAEEVTRK T0375 216 :GA 2afbA 233 :NF T0375 218 :VLVCAWAE 2afbA 236 :TVGITLRE T0375 228 :ADALGPD 2afbA 254 :VMVFENG T0375 236 :KLLHSDAF 2afbA 261 :QPHFSNRY T0375 245 :P 2afbA 269 :E T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2afbA 272 :IVDRVGAGDSFAGALIYGSLMGFDSQKKAEFAAAASCLKHTIPGD Number of specific fragments extracted= 19 number of extra gaps= 4 total=203 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1750829612.pdb -s /var/tmp/to_scwrl_1750829612.seq -o /var/tmp/from_scwrl_1750829612.pdb > /var/tmp/scwrl_1750829612.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1750829612.pdb Number of alignments=13 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2dcnA/T0375-2dcnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2dcnA/T0375-2dcnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2dcnA read from 2dcnA/T0375-2dcnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2dcnA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2dcnA)A2 Warning: unaligning (T0375)L289 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2dcnA)R290 Warning: unaligning (T0375)Q290 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2dcnA)R290 T0375 3 :QILCVGLVVLDVISLVDK 2dcnA 3 :KLITLGEILIEFNALSPG T0375 22 :PKED 2dcnA 21 :PLRH T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASG 2dcnA 25 :VSYFEKHVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVP T0375 105 :SRTILYYDR 2dcnA 102 :SESIYYRKG T0375 114 :SLPDVSATDFEKVDLTQFKWIHIE 2dcnA 112 :AGSKLSPEDVDEEYVKSADLVHSS T0375 140 :NASEQVKMLQRIDAHNTRQPPEQKIRVSVEV 2dcnA 141 :ISSTAKEAVYKAFEIASNRSFDTNIRLKLWS T0375 171 :EKPREELFQLFGY 2dcnA 173 :EEAKREILKLLSK T0375 184 :GDVVFVSKDVAKHL 2dcnA 188 :LKFLITDTDDSKII T0375 198 :GFQSAEEALRGLYG 2dcnA 203 :GESDPDKAAKAFSD T0375 216 :GA 2dcnA 217 :YA T0375 218 :VLVCAWAEEGADALGPD 2dcnA 220 :IIVMKLGPKGAIVYYDG T0375 236 :KLLHSDAF 2dcnA 237 :KKYYSSGY T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 2dcnA 245 :QVPVEDVTGAGDALGGTFLSLYYKGFEMEKALDYAIVASTLNVM T0375 291 :GFDGIV 2dcnA 291 :GDQENL Number of specific fragments extracted= 14 number of extra gaps= 1 total=217 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1693485025.pdb -s /var/tmp/to_scwrl_1693485025.seq -o /var/tmp/from_scwrl_1693485025.pdb > /var/tmp/scwrl_1693485025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1693485025.pdb Number of alignments=14 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2abqA/T0375-2abqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2abqA/T0375-2abqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2abqA read from 2abqA/T0375-2abqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2abqA in template set T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDK 2abqA 8 :NPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAP 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGG T0375 65 :HVADFVLDDLRRYSVDLRYTVF 2abqA 62 :FTGAYVRNALEKEEIGLSFIEV T0375 89 :TGSVPIATVII 2abqA 84 :EGDTRINVKIK T0375 102 :ASGSR 2abqA 95 :GKQET T0375 110 :YYDRSLPDVSATDFEKVD 2abqA 100 :ELNGTAPLIKKEHVQALL T0375 128 :LTQF 2abqA 120 :LTEL T0375 132 :KWIHIEGRNAS 2abqA 127 :DVLVLAGSVPQ T0375 143 :EQVKMLQRIDAHNTRQPPEQK 2abqA 143 :IYRSMTQIAKERGAFVAVDTS T0375 174 :REELFQLF 2abqA 164 :GEALHEVL T0375 182 :GYGDVVFVSKDVAKHL 2abqA 173 :AKPSFIKPNHHELSEL T0375 198 :GFQ 2abqA 190 :SKP T0375 201 :SAEEALRGLYGRVRKGA 2abqA 195 :SIEDAIPHVQRLIGEGI T0375 218 :VLVCAWAEEGADALGPD 2abqA 213 :SILVSFAGDGALFASAE T0375 236 :KLLHSDAF 2abqA 230 :GMFHVNVP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 238 :SGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 17 number of extra gaps= 0 total=234 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_360022300.pdb -s /var/tmp/to_scwrl_360022300.seq -o /var/tmp/from_scwrl_360022300.pdb > /var/tmp/scwrl_360022300.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_360022300.pdb Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f02A/T0375-2f02A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2f02A/T0375-2f02A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f02A read from 2f02A/T0375-2f02A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f02A in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2f02A)S0 T0375 3 :QILCVG 2f02A 1 :LIVTVT T0375 9 :LVVLDVISLVDK 2f02A 8 :NPSIDISYLLDH T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAP 2f02A 20 :LKLDTVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLGG T0375 65 :HVADFVLDDLRRYSVDLRYTVF 2f02A 62 :FHGAFIANELKKANIPQAFTSI T0375 89 :TGSVPIATVIIN 2f02A 84 :KEETRDSIAILH T0375 103 :SGSRTILYYDR 2f02A 96 :EGNQTEILEAG T0375 116 :PDVSATDFEKVD 2f02A 107 :PTVSPEEISNFL T0375 128 :LTQFKWIHIEGRNA 2f02A 125 :IKQAEIVTISGSLA T0375 142 :S 2f02A 140 :G T0375 143 :EQVKMLQRIDAHNTRQPPEQKI 2f02A 145 :FYQELVQKAHAQEVKVLLDTSG T0375 175 :EELFQLFGY 2f02A 167 :DSLRQVLQG T0375 184 :GDVVFVSKDVAKHL 2f02A 179 :PYLIKPNLEELEGL T0375 198 :GFQ 2f02A 194 :GQD T0375 201 :SAEEALRGLY 2f02A 201 :PLAAVQTALT T0375 215 :KGA 2f02A 215 :AGI T0375 218 :VLVCAWAEEGADALGPD 2f02A 219 :WIVISLGKDGAIAKHHD T0375 236 :KLLHSDAF 2f02A 236 :QFYRVKIP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQ 2f02A 244 :TIQAKNPVGSGDATIAGLAYGLAKDAPAAELLKWGMAAGMANAQER Number of specific fragments extracted= 18 number of extra gaps= 0 total=252 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1376941061.pdb -s /var/tmp/to_scwrl_1376941061.seq -o /var/tmp/from_scwrl_1376941061.pdb > /var/tmp/scwrl_1376941061.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1376941061.pdb Number of alignments=16 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2absA/T0375-2absA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2absA/T0375-2absA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2absA read from 2absA/T0375-2absA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2absA in template set Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)K163 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)F199 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 Warning: unaligning (T0375)Q200 because of BadResidue code BAD_PEPTIDE at template residue (2absA)V237 Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2absA)N248 T0375 1 :GSQILCVGLVVLDVISLVD 2absA 12 :PMRVFAIGNPILDLVAEVP T0375 22 :PKEDSEIRCLSQ 2absA 39 :LKRGDATLATPE T0375 34 :RWQRGGNASNSCTILSLL 2absA 64 :TSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 2absA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 2absA 133 :EKERTLCTHLGACGSFR T0375 120 :ATDFEK 2absA 151 :PEDWTT T0375 127 :DLTQFKWIHIEGRN 2absA 157 :FASGALIFYATAYT T0375 141 :ASEQVKMLQRIDAH 2absA 175 :PKNALEVAGYAHGI T0375 155 :NTRQPPE 2absA 190 :NAIFTLN T0375 164 :IRVSV 2absA 199 :APFCV T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 2absA 204 :ELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :G 2absA 235 :N T0375 202 :AEEALRGLYGRVR 2absA 249 :KEHAVEVCTGALR T0375 215 :KG 2absA 265 :AG T0375 217 :A 2absA 272 :T T0375 218 :VLVCAWAEEGADAL 2absA 274 :LVVMTRGHNPVIAA T0375 232 :GPDGKLL 2absA 290 :TADGTVV T0375 239 :HSDAFP 2absA 299 :EVGVPV T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2absA 307 :AEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 20 number of extra gaps= 2 total=272 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_100603786.pdb -s /var/tmp/to_scwrl_100603786.seq -o /var/tmp/from_scwrl_100603786.pdb > /var/tmp/scwrl_100603786.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_100603786.pdb Number of alignments=17 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ajrA/T0375-2ajrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2ajrA/T0375-2ajrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ajrA read from 2ajrA/T0375-2ajrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ajrA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2ajrA)H0 Warning: unaligning (T0375)V11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ajrA)L11 Warning: unaligning (T0375)L12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ajrA)L11 T0375 3 :QILCVG 2ajrA 1 :MVLTVT T0375 9 :LV 2ajrA 8 :NP T0375 13 :DVISLVDK 2ajrA 12 :DREIFIED T0375 22 :PKEDSEIRCLS 2ajrA 20 :FQVNRLYRIND T0375 33 :QRWQRGGNASNSCTILSLLGAPCAFMGSMAP 2ajrA 34 :TQMSPGGKGINVSIALSKLGVPSVATGFVGG T0375 65 :HVADFVLDDLRRY 2ajrA 65 :YMGKILVEELRKI T0375 78 :SVDLRYTVF 2ajrA 80 :LITTNFVYV T0375 89 :TGSVPIATVIINEASGSRTILYYDR 2ajrA 89 :EGETRENIEIIDEKNKTITAINFPG T0375 116 :PDVSATDFEKVD 2ajrA 114 :PDVTDMDVNHFL T0375 128 :LTQFKWIHIEGRNAS 2ajrA 132 :LSKVDCVVISGSIPP T0375 143 :EQVKMLQRIDAHNTRQPPEQ 2ajrA 152 :ICNELVRLARERGVFVFVEQ T0375 173 :PREELFQLF 2ajrA 172 :TPRLLERIY T0375 182 :GYGDVVFVS 2ajrA 184 :EFPNVVKPD T0375 197 :LGFQ 2ajrA 201 :LGVD T0375 201 :SAEEALRGLYGRVRK 2ajrA 207 :TFDDYVKLAEKLAEK T0375 217 :A 2ajrA 222 :S T0375 218 :VLVCAWAEEGADALGPD 2ajrA 224 :VSVVSYEVKNDIVATRE T0375 236 :KLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 2ajrA 241 :GVWLIRSKEEIDTSHLLGAGDAYVAGMVYYFIK T0375 269 :GRSVQEALRFGCQVAGKKCGLQG 2ajrA 275 :GANFLEMAKFGFASALAATRRKE Number of specific fragments extracted= 19 number of extra gaps= 1 total=291 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1408960628.pdb -s /var/tmp/to_scwrl_1408960628.seq -o /var/tmp/from_scwrl_1408960628.pdb > /var/tmp/scwrl_1408960628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1408960628.pdb Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ub0A/T0375-1ub0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1ub0A expands to /projects/compbio/data/pdb/1ub0.pdb.gz 1ub0A:Skipped atom 1460, because occupancy 0.350 <= existing 0.650 in 1ub0A # T0375 read from 1ub0A/T0375-1ub0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ub0A read from 1ub0A/T0375-1ub0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1ub0A to template set # found chain 1ub0A in template set Warning: unaligning (T0375)V170 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ub0A)A116 Warning: unaligning (T0375)E226 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ub0A)E181 T0375 1 :GSQILCVGL 1ub0A 1 :MRVALTIAG T0375 34 :RWQRGGNAS 1ub0A 10 :SDSGGGAGV T0375 68 :DFVLDDLRRYSVDLRYTVF 1ub0A 19 :QADLKVFFRFGVYGTSALT T0375 96 :TVIINEASGSRTILYYDR 1ub0A 38 :LVTAQNTLGVQRVHLLPP T0375 120 :ATDFEKVDLT 1ub0A 59 :YAQIESVAQD T0375 130 :QFKWIHIEGRNA 1ub0A 70 :PLHAAKTGALGD T0375 142 :SEQVKMLQRIDAHNT 1ub0A 83 :AIVEAVAEAVRRFGV T0375 157 :RQPPEQ 1ub0A 99 :PLVVDP T0375 171 :EKPREELF 1ub0A 117 :KEAAAALK T0375 179 :QLFGYGDVVFVSKDVAKHL 1ub0A 126 :RLFPLADLVTPNRLEAEAL T0375 198 :GFQ 1ub0A 146 :GRP T0375 201 :SAEEALRGLYGRVRKGA 1ub0A 151 :TLKEAEEAAKALLALGP T0375 218 :VLVCAWAE 1ub0A 169 :AVLLKGGH T0375 228 :ADALGPD 1ub0A 184 :DLLATRG T0375 236 :KLLHSDAF 1ub0A 191 :GVLRFSAP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1ub0A 199 :RVHTRNTHGTGCTLSAAIAALLAKGRPLAEAVAEAKAYLTRALKT T0375 290 :Q 1ub0A 247 :L Number of specific fragments extracted= 17 number of extra gaps= 0 total=308 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_888830763.pdb -s /var/tmp/to_scwrl_888830763.seq -o /var/tmp/from_scwrl_888830763.pdb > /var/tmp/scwrl_888830763.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_888830763.pdb Number of alignments=19 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vi9A/T0375-1vi9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1vi9A expands to /projects/compbio/data/pdb/1vi9.pdb.gz 1vi9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1928, because occupancy 0.500 <= existing 0.500 in 1vi9A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1930, because occupancy 0.500 <= existing 0.500 in 1vi9A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1932, because occupancy 0.500 <= existing 0.500 in 1vi9A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1934, because occupancy 0.500 <= existing 0.500 in 1vi9A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0375 read from 1vi9A/T0375-1vi9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1vi9A read from 1vi9A/T0375-1vi9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1vi9A to template set # found chain 1vi9A in template set Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)I108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)Y110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 1 :GSQILCVGL 1vi9A 2 :MKNILAIQS T0375 34 :RWQRGGNASNSCT 1vi9A 11 :HVVYGHAGNSAAE T0375 47 :ILSLLGAPCAFMG 1vi9A 25 :PMRRLGANVWPLN T0375 83 :Y 1vi9A 38 :T T0375 86 :F 1vi9A 41 :F T0375 89 :T 1vi9A 44 :H T0375 101 :EASGSRT 1vi9A 45 :TQYGKWT T0375 111 :Y 1vi9A 55 :M T0375 119 :SATDFEKVD 1vi9A 56 :PPSHLTEIV T0375 128 :LTQFKWIHIEGRNA 1vi9A 73 :LHTCDAVLSGYLGS T0375 142 :S 1vi9A 88 :E T0375 143 :EQVKMLQRIDAH 1vi9A 92 :HILGIVRQVKAA T0375 155 :NTRQPPEQ 1vi9A 106 :QAKYFCDP T0375 163 :KIRVSVEVEKPREELF 1vi9A 118 :PEKGCIVAPGVAEFHV T0375 179 :QLFGYGDVVFVSKDVAKHL 1vi9A 135 :HGLPASDIIAPNLVELEIL T0375 198 :GFQ 1vi9A 155 :EHA T0375 201 :SAEEALRGLYGRVRKGA 1vi9A 160 :NVEEAVLAARELIAQGP T0375 218 :VLVCAWAEEG 1vi9A 178 :IVLVKHLARA T0375 228 :ADALGPD 1vi9A 196 :MLLVTAD T0375 236 :KLLHSDAF 1vi9A 203 :EAWHISRP T0375 245 :PPRV 1vi9A 211 :LVDF T0375 249 :VDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKC 1vi9A 217 :RQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIM Number of specific fragments extracted= 22 number of extra gaps= 2 total=330 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_212295100.pdb -s /var/tmp/to_scwrl_212295100.seq -o /var/tmp/from_scwrl_212295100.pdb > /var/tmp/scwrl_212295100.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_212295100.pdb Number of alignments=20 # command:# reading script from file T0375.t2k.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rkd/T0375-1rkd-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 1rkd/T0375-1rkd-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1rkd read from 1rkd/T0375-1rkd-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLP 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAA T0375 118 :VSATDFE 1rkd 120 :LSPALVE T0375 125 :KVDLTQFKWIHI 1rkd 129 :RERIANASALLM T0375 138 :GRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEK 1rkd 141 :QLESPLESVMAAAKIAHQNKTIVALNPAPARELPD T0375 179 :QLFGYGDVVFVSKDVAKHLGFQ 1rkd 176 :ELLALVDIITPNETEAEKLTGI T0375 201 :SAEE 1rkd 200 :ENDE T0375 205 :ALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1rkd 206 :AKAAQVLHEKGIRTVLITLGSRGVWASVNGE T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1rkd 237 :GQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=338 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1793256507.pdb -s /var/tmp/to_scwrl_1793256507.seq -o /var/tmp/from_scwrl_1793256507.pdb > /var/tmp/scwrl_1793256507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1793256507.pdb Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fv7A/T0375-2fv7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2fv7A/T0375-2fv7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fv7A read from 2fv7A/T0375-2fv7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fv7A in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSL 2fv7A 16 :AAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANL T0375 117 :DVSATDFEKV 2fv7A 130 :LLNTEDLRAA T0375 127 :DLTQFK 2fv7A 142 :VISRAK T0375 134 :IHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEV 2fv7A 148 :VMVCQLEITPATSLEALTMARRSGVKTLFNPAPAIAD T0375 179 :QLFGYGDVVFVSKDVAKHLGFQ 2fv7A 188 :QFYTLSDVFCCNESEAEILTGL T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 2fv7A 215 :ADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAY T0375 269 :GRSVQEALRFGCQVAGKKCGLQGF 2fv7A 284 :NLSLEDMLNRSNFIAAVSVQAAGT Number of specific fragments extracted= 7 number of extra gaps= 0 total=345 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_993683397.pdb -s /var/tmp/to_scwrl_993683397.seq -o /var/tmp/from_scwrl_993683397.pdb > /var/tmp/scwrl_993683397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_993683397.pdb Number of alignments=22 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tyyA/T0375-1tyyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 1tyyA/T0375-1tyyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tyyA read from 1tyyA/T0375-1tyyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)R106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 107 :TILYYDR 1tyyA 99 :FTYLVHP T0375 114 :SLPDVSATDFEK 1tyyA 107 :ADTYVSPQDLPP T0375 128 :LTQFKWIHIEGRNASE 1tyyA 119 :FRQYEWFYFSSIGLTD T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1tyyA 139 :EACLEGARRMREAGGYVLFDVNLRSKMW T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQSAEE 1tyyA 171 :EIPELIARSAALASICKVSADELCQLSGASHWQ T0375 211 :GRVRKGAVLVCAWAEEGADALGPDG 1tyyA 209 :LRDLGCDTTIISLGADGALLITAEG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1tyyA 234 :EFHFPAPRVDVVDTTGAGDAFVGGLLFTLSR T0375 269 :GRS 1tyyA 267 :CWD T0375 272 :VQEALRFGCQVAGKKCGLQGF 1tyyA 273 :LAEAISNANACGAMAVTAKGA Number of specific fragments extracted= 11 number of extra gaps= 0 total=356 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_2026929415.pdb -s /var/tmp/to_scwrl_2026929415.seq -o /var/tmp/from_scwrl_2026929415.pdb > /var/tmp/scwrl_2026929415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2026929415.pdb Number of alignments=23 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2afbA/T0375-2afbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2afbA/T0375-2afbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2afbA read from 2afbA/T0375-2afbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2afbA in template set Warning: unaligning (T0375)Q33 because of BadResidue code BAD_PEPTIDE in next template residue (2afbA)D28 Warning: unaligning (T0375)R34 because of BadResidue code BAD_PEPTIDE at template residue (2afbA)D28 Warning: unaligning (T0375)I94 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2afbA)Y88 Warning: unaligning (T0375)A95 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2afbA)Y88 Warning: unaligning (T0375)V189 because of BadResidue code BAD_PEPTIDE in next template residue (2afbA)N194 Warning: unaligning (T0375)S190 because of BadResidue code BAD_PEPTIDE at template residue (2afbA)N194 Warning: unaligning (T0375)P246 because of BadResidue code BAD_PEPTIDE in next template residue (2afbA)H271 Warning: unaligning (T0375)R247 because of BadResidue code BAD_PEPTIDE at template residue (2afbA)H271 T0375 1 :GSQILCVGLVVLDVISL 2afbA 0 :HMKVVTFGEIMLRLSPP T0375 19 :DKYPKED 2afbA 17 :DHKRIFQ T0375 30 :CLS 2afbA 24 :TDS T0375 35 :WQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 2afbA 29 :VTYGGAEANVAAFLAQMGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDYIARGGN T0375 91 :SVP 2afbA 84 :RIG T0375 96 :TVIINEASGSRTILYYDR 2afbA 89 :FLEIGASQRPSKVVYDRA T0375 114 :SLPDVSATDFEKV 2afbA 109 :AISEAKREDFDWE T0375 127 :DLTQFKWIHIEGRNASE 2afbA 123 :ILDGARWFHFSGITPPL T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 2afbA 145 :LILEDALKVANEKGVTVSCDLNYRARLW T0375 172 :KPREELFQLFGYGDVVF 2afbA 176 :EAQKVMIPFMEYVDVLI T0375 191 :KDVAKHLGFQ 2afbA 195 :EEDIEKVLGI T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEE 2afbA 219 :EAYAKIAEEVTRKYNFKTVGITLRES T0375 227 :GADALGPDG 2afbA 253 :SVMVFENGQ T0375 238 :LHSDAFPP 2afbA 262 :PHFSNRYE T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2afbA 272 :IVDRVGAGDSFAGALIYGSLMGFDSQKKAEFAAAASCLKHTIPGD Number of specific fragments extracted= 15 number of extra gaps= 4 total=371 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_989230775.pdb -s /var/tmp/to_scwrl_989230775.seq -o /var/tmp/from_scwrl_989230775.pdb > /var/tmp/scwrl_989230775.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_989230775.pdb Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2dcnA/T0375-2dcnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2dcnA/T0375-2dcnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2dcnA read from 2dcnA/T0375-2dcnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2dcnA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2dcnA)A2 Warning: unaligning (T0375)L289 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2dcnA)R290 Warning: unaligning (T0375)Q290 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2dcnA)R290 T0375 3 :QILCVGLVVLDVISLVDK 2dcnA 3 :KLITLGEILIEFNALSPG T0375 22 :PKED 2dcnA 21 :PLRH T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIIN 2dcnA 25 :VSYFEKHVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRH T0375 101 :EASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 2dcnA 99 :PLKSESIYYRKGSAGSKLSPEDVDEEYVKSADLVHSSGITLAI T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 2dcnA 143 :STAKEAVYKAFEIASNRSFDTNIRLKLW T0375 172 :KPREELFQLFG 2dcnA 174 :EAKREILKLLS T0375 183 :YGDVVFVSKDVAKHLGFQSAEEALR 2dcnA 187 :HLKFLITDTDDSKIILGESDPDKAA T0375 210 :YGRVRKGAVLVCAWAEEGADALGPDG 2dcnA 212 :KAFSDYAEIIVMKLGPKGAIVYYDGK T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 2dcnA 238 :KYYSSGYQVPVEDVTGAGDALGGTFLSLYYKGFEMEKALDYAIVASTLNVM T0375 291 :GFD 2dcnA 291 :GDQ Number of specific fragments extracted= 10 number of extra gaps= 1 total=381 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1802491981.pdb -s /var/tmp/to_scwrl_1802491981.seq -o /var/tmp/from_scwrl_1802491981.pdb > /var/tmp/scwrl_1802491981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1802491981.pdb Number of alignments=25 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2abqA/T0375-2abqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2abqA/T0375-2abqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2abqA read from 2abqA/T0375-2abqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2abqA in template set T0375 4 :ILCVGLVVLDVISLVDK 2abqA 3 :YTVTLNPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEGDTRINVKIK T0375 101 :EASGSRTIL 2abqA 95 :GKQETELNG T0375 114 :SLPDVSATDFEKV 2abqA 104 :TAPLIKKEHVQAL T0375 127 :DLTQFK 2abqA 119 :QLTELE T0375 133 :WIHIEGRNASE 2abqA 127 :DVLVLAGSVPQ T0375 144 :QVKMLQRIDAHNTRQPPEQKIR 2abqA 142 :TIYRSMTQIAKERGAFVAVDTS T0375 174 :REELFQLF 2abqA 164 :GEALHEVL T0375 182 :GYGDVVFVSKDVAKHLGFQ 2abqA 173 :AKPSFIKPNHHELSELVSK T0375 201 :S 2abqA 194 :A T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 2abqA 197 :EDAIPHVQRLIGEGIESILVSFAGDGALFASAEG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 231 :MFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 13 number of extra gaps= 0 total=394 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1233114543.pdb -s /var/tmp/to_scwrl_1233114543.seq -o /var/tmp/from_scwrl_1233114543.pdb > /var/tmp/scwrl_1233114543.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1233114543.pdb Number of alignments=26 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2absA/T0375-2absA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2absA/T0375-2absA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2absA read from 2absA/T0375-2absA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2absA in template set Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)R165 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2absA)N248 T0375 2 :SQILCVGLVVLDVISLVDK 2absA 13 :MRVFAIGNPILDLVAEVPS T0375 21 :YPKEDSEIRCLSQRWQ 2absA 38 :FLKRGDATLATPEQMR T0375 37 :RGGNASNSCTILSLL 2absA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTV 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMV T0375 87 :QTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDF 2absA 119 :APGQSTGVCAVLINEKERTLCTHLGACGSFRLPEDWT T0375 126 :VDLTQFKWIHIEGRNASE 2absA 156 :TFASGALIFYATAYTLTA T0375 144 :QVKMLQRIDAHN 2absA 176 :KNALEVAGYAHG T0375 156 :TRQPPEQK 2absA 189 :PNAIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKV T0375 202 :AEE 2absA 249 :KEH T0375 205 :ALRGLYGRVRK 2absA 256 :CTGALRLLTAG T0375 216 :GAVLVCAWAEEGADALG 2absA 272 :TKLVVMTRGHNPVIAAE T0375 233 :PDGK 2absA 291 :ADGT T0375 237 :LLHSDAFPPPR 2absA 296 :VVHEVGVPVVA T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 2absA 310 :IVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS Number of specific fragments extracted= 15 number of extra gaps= 1 total=409 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1638253539.pdb -s /var/tmp/to_scwrl_1638253539.seq -o /var/tmp/from_scwrl_1638253539.pdb > /var/tmp/scwrl_1638253539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1638253539.pdb Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f02A/T0375-2f02A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2f02A/T0375-2f02A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f02A read from 2f02A/T0375-2f02A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f02A in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2f02A)S0 T0375 3 :QILCVG 2f02A 1 :LIVTVT T0375 9 :LVVLDVISLVDK 2f02A 8 :NPSIDISYLLDH T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2f02A 20 :LKLDTVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTTGS 2f02A 61 :GFHGAFIANELKKANIPQAFTSIKEETR T0375 94 :IATVIINEASGSRTILYYDRSLPDVSATDFEKV 2f02A 89 :DSIAILHEGNQTEILEAGPTVSPEEISNFLENF T0375 127 :DLTQFKWIHIEGRNASE 2f02A 124 :LIKQAEIVTISGSLAKG T0375 144 :QVKMLQRIDAHNTRQPPEQKIR 2f02A 144 :DFYQELVQKAHAQEVKVLLDTS T0375 174 :REELFQLFG 2f02A 166 :GDSLRQVLQ T0375 183 :YGDVVFVSKDVAKHLGFQ 2f02A 178 :KPYLIKPNLEELEGLLGQ T0375 201 :SAEE 2f02A 200 :NPLA T0375 207 :RGLYGRV 2f02A 204 :AVQTALT T0375 214 :RKGAVLVCAWAEEGADALGPDG 2f02A 215 :AGIEWIVISLGKDGAIAKHHDQ T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQ 2f02A 237 :FYRVKIPTIQAKNPVGSGDATIAGLAYGLAKDAPAAELLKWGMAAGMANAQER Number of specific fragments extracted= 13 number of extra gaps= 0 total=422 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_263043320.pdb -s /var/tmp/to_scwrl_263043320.seq -o /var/tmp/from_scwrl_263043320.pdb > /var/tmp/scwrl_263043320.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_263043320.pdb Number of alignments=28 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2awdA/T0375-2awdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2awdA/T0375-2awdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2awdA read from 2awdA/T0375-2awdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2awdA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2awdA)S0 Warning: unaligning (T0375)V11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2awdA)I11 Warning: unaligning (T0375)L12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2awdA)I11 Warning: unaligning (T0375)E137 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2awdA)G135 Warning: unaligning (T0375)G138 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2awdA)G135 T0375 3 :QILCVG 2awdA 1 :LIVTVT T0375 9 :LV 2awdA 8 :NP T0375 13 :DVISLVDK 2awdA 12 :DISYLLDH T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2awdA 20 :LKLDTVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTTGSV 2awdA 61 :GFHGAFIANELKKANIPQAFTSIKEETRD T0375 95 :ATVIINEASGSRTILYYDRSLPDVSATDFEK 2awdA 90 :SIAILHEGNQTEILEAGPTVSPEEISNFLEN T0375 127 :DLTQFKWIHI 2awdA 124 :LIKQAEIVTI T0375 139 :RNASE 2awdA 136 :SLAKG T0375 144 :QVKMLQRIDAHNTRQPPEQKIR 2awdA 144 :DFYQELVQKAHAQEVKVLLDTS T0375 174 :REELFQLFG 2awdA 166 :GDSLRQVLQ T0375 183 :YGDVVFVSKDVAKHLGFQ 2awdA 178 :KPYLIKPNLEELEGLLGQ T0375 201 :SAEEALRGLY 2awdA 200 :NPLAAVQTAL T0375 212 :RVRKGAVLVCAWAEEGADALGPDG 2awdA 213 :MFAGIEWIVISLGKDGAIAKHHDQ T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 2awdA 237 :FYRVKIPTIQAKNPVGSGDATIAGLAYGLAKDAPAAELLKWGMAAGMANAQE Number of specific fragments extracted= 14 number of extra gaps= 2 total=436 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1038828826.pdb -s /var/tmp/to_scwrl_1038828826.seq -o /var/tmp/from_scwrl_1038828826.pdb > /var/tmp/scwrl_1038828826.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1038828826.pdb Number of alignments=29 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ajrA/T0375-2ajrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2ajrA/T0375-2ajrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ajrA read from 2ajrA/T0375-2ajrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ajrA in template set Warning: unaligning (T0375)V11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ajrA)L11 Warning: unaligning (T0375)L12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ajrA)L11 T0375 4 :ILCVG 2ajrA 2 :VLTVT T0375 9 :LV 2ajrA 8 :NP T0375 13 :DVISLVDK 2ajrA 12 :DREIFIED T0375 22 :PKEDSEIRCL 2ajrA 20 :FQVNRLYRIN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2ajrA 33 :KTQMSPGGKGINVSIALSKLGVPSVATGFVG T0375 64 :GHVADFVLDDLRRY 2ajrA 64 :GYMGKILVEELRKI T0375 78 :SVDLRYTVFQTTGSVPI 2ajrA 80 :LITTNFVYVEGETRENI T0375 97 :VIINEASGSRTILYYDR 2ajrA 97 :EIIDEKNKTITAINFPG T0375 117 :DVSATDFEKV 2ajrA 115 :DVTDMDVNHF T0375 127 :DLTQFKWIHIEGRNASE 2ajrA 131 :TLSKVDCVVISGSIPPG T0375 144 :QVKMLQRIDAHNTRQPPEQKIRV 2ajrA 151 :GICNELVRLARERGVFVFVEQTP T0375 175 :EELFQLF 2ajrA 174 :RLLERIY T0375 182 :GYGDVVFVS 2ajrA 184 :EFPNVVKPD T0375 197 :LGFQ 2ajrA 193 :LRGN T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKL 2ajrA 207 :TFDDYVKLAEKLAEKSQVSVVSYEVKNDIVATREGVW T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 2ajrA 244 :LIRSKEEIDTSHLLGAGDAYVAGMVYYFIK T0375 269 :GRSVQEALRFGCQVAGKKCGL 2ajrA 275 :GANFLEMAKFGFASALAATRR Number of specific fragments extracted= 17 number of extra gaps= 1 total=453 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_173506518.pdb -s /var/tmp/to_scwrl_173506518.seq -o /var/tmp/from_scwrl_173506518.pdb > /var/tmp/scwrl_173506518.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_173506518.pdb Number of alignments=30 # command:# reading script from file T0375.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rkd/T0375-1rkd-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 1rkd/T0375-1rkd-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1rkd read from 1rkd/T0375-1rkd-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV T0375 101 :EASGSRTILYYDRSLPDVSATDFEKVD 1rkd 103 :NGEGENVIGIHAGANAALSPALVEAQR T0375 128 :LTQFKWIHIEGRNA 1rkd 132 :IANASALLMQLESP T0375 142 :SEQVKMLQRIDAHNTRQPPEQKIR 1rkd 147 :ESVMAAAKIAHQNKTIVALNPAPA T0375 171 :EKPRE 1rkd 171 :RELPD T0375 179 :QLFGYGDVVFVSKDVAKHL 1rkd 176 :ELLALVDIITPNETEAEKL T0375 198 :GFQ 1rkd 196 :GIR T0375 201 :SAEEALRGLYGRVRKGA 1rkd 201 :NDEDAAKAAQVLHEKGI T0375 218 :VLVCAWAEEGADALGPD 1rkd 219 :TVLITLGSRGVWASVNG T0375 236 :KLLHSDAF 1rkd 236 :EGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV Number of specific fragments extracted= 11 number of extra gaps= 0 total=464 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_31797565.pdb -s /var/tmp/to_scwrl_31797565.seq -o /var/tmp/from_scwrl_31797565.pdb > /var/tmp/scwrl_31797565.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_31797565.pdb Number of alignments=31 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fv7A/T0375-2fv7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2fv7A/T0375-2fv7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fv7A read from 2fv7A/T0375-2fv7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fv7A in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 2fv7A 16 :AAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIV T0375 101 :EASGSRTILYYDRSLPDVSATDFEKVD 2fv7A 114 :NNEGQNIIVIVAGANLLLNTEDLRAAA T0375 128 :LTQFKWIHIEGRNA 2fv7A 143 :ISRAKVMVCQLEIT T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 2fv7A 158 :ATSLEALTMARRSGVKTLFNP T0375 169 :E 2fv7A 182 :I T0375 171 :EKPRE 2fv7A 183 :ADLDP T0375 179 :QLFGYGDVVFVSKDVAKHL 2fv7A 188 :QFYTLSDVFCCNESEAEIL T0375 198 :GFQ 2fv7A 208 :GLT T0375 201 :SAEEALRGLYGRVRKGA 2fv7A 213 :SAADAGEAALVLLKRGC T0375 218 :VLVCAWAEEGADALGPDG 2fv7A 231 :VVIITLGAEGCVVLSQTE T0375 236 :KLLHSDAF 2fv7A 250 :EPKHIPTE T0375 245 :PPRVVDTLGAGDTFNASVIFSLS 2fv7A 258 :KVKAVDTTGAGDSFVGALAFYLA T0375 268 :QGRSVQEALRFGCQVAGKKCGLQGFDGIV 2fv7A 283 :PNLSLEDMLNRSNFIAAVSVQAAGTQSSY Number of specific fragments extracted= 13 number of extra gaps= 0 total=477 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_456651794.pdb -s /var/tmp/to_scwrl_456651794.seq -o /var/tmp/from_scwrl_456651794.pdb > /var/tmp/scwrl_456651794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_456651794.pdb Number of alignments=32 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2afbA/T0375-2afbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2afbA/T0375-2afbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2afbA read from 2afbA/T0375-2afbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2afbA in template set Warning: unaligning (T0375)Q33 because of BadResidue code BAD_PEPTIDE in next template residue (2afbA)D28 Warning: unaligning (T0375)R34 because of BadResidue code BAD_PEPTIDE at template residue (2afbA)D28 Warning: unaligning (T0375)I94 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (2afbA)Y88 Warning: unaligning (T0375)A95 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (2afbA)Y88 Warning: unaligning (T0375)V189 because of BadResidue code BAD_PEPTIDE in next template residue (2afbA)N194 Warning: unaligning (T0375)S190 because of BadResidue code BAD_PEPTIDE at template residue (2afbA)N194 Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2afbA)N217 Warning: unaligning (T0375)P246 because of BadResidue code BAD_PEPTIDE in next template residue (2afbA)H271 Warning: unaligning (T0375)R247 because of BadResidue code BAD_PEPTIDE at template residue (2afbA)H271 T0375 1 :GSQILCVGLVVLDVI 2afbA 0 :HMKVVTFGEIMLRLS T0375 22 :PKEDSEIR 2afbA 15 :PPDHKRIF T0375 30 :CLS 2afbA 24 :TDS T0375 35 :WQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 2afbA 29 :VTYGGAEANVAAFLAQMGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDYIARGGN T0375 91 :SVP 2afbA 84 :RIG T0375 96 :TVIINEASGSRTILYYDR 2afbA 89 :FLEIGASQRPSKVVYDRA T0375 114 :SLPDVSATDFEKVD 2afbA 109 :AISEAKREDFDWEK T0375 128 :LTQFKWIHIEGRNAS 2afbA 124 :LDGARWFHFSGITPP T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 2afbA 146 :ILEDALKVANEKGVTVSCDLNYRARLWT T0375 171 :EKPREELFQLFGYGDVVF 2afbA 175 :EEAQKVMIPFMEYVDVLI T0375 191 :KDVAKHL 2afbA 195 :EEDIEKV T0375 198 :GFQ 2afbA 203 :GIS T0375 202 :AEEALRGLYGRVRK 2afbA 218 :REAYAKIAEEVTRK T0375 216 :GA 2afbA 233 :NF T0375 218 :VLVCAWAE 2afbA 236 :TVGITLRE T0375 228 :ADALGPD 2afbA 254 :VMVFENG T0375 236 :KLLHSDAF 2afbA 261 :QPHFSNRY T0375 245 :P 2afbA 269 :E T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2afbA 272 :IVDRVGAGDSFAGALIYGSLMGFDSQKKAEFAAAASCLKHTIPGD Number of specific fragments extracted= 19 number of extra gaps= 4 total=496 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_80329499.pdb -s /var/tmp/to_scwrl_80329499.seq -o /var/tmp/from_scwrl_80329499.pdb > /var/tmp/scwrl_80329499.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_80329499.pdb Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2dcnA/T0375-2dcnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2dcnA/T0375-2dcnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2dcnA read from 2dcnA/T0375-2dcnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2dcnA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2dcnA)A2 Warning: unaligning (T0375)L289 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2dcnA)R290 Warning: unaligning (T0375)Q290 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2dcnA)R290 T0375 3 :QILCVGLVVLDVISLVDK 2dcnA 3 :KLITLGEILIEFNALSPG T0375 22 :PKED 2dcnA 21 :PLRH T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASG 2dcnA 25 :VSYFEKHVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVP T0375 105 :SRTILYYDR 2dcnA 102 :SESIYYRKG T0375 114 :SLPDVSATDFEKVDLTQFKWIHIE 2dcnA 112 :AGSKLSPEDVDEEYVKSADLVHSS T0375 140 :NASEQVKMLQRIDAHNTRQPPEQKIRVSVEV 2dcnA 141 :ISSTAKEAVYKAFEIASNRSFDTNIRLKLWS T0375 171 :EKPREELFQLFGY 2dcnA 173 :EEAKREILKLLSK T0375 184 :GDVVFVSKDVAKHL 2dcnA 188 :LKFLITDTDDSKII T0375 198 :GFQSAEEALRGLYG 2dcnA 203 :GESDPDKAAKAFSD T0375 216 :GA 2dcnA 217 :YA T0375 218 :VLVCAWAEEGADALGPD 2dcnA 220 :IIVMKLGPKGAIVYYDG T0375 236 :KLLHSDAF 2dcnA 237 :KKYYSSGY T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 2dcnA 245 :QVPVEDVTGAGDALGGTFLSLYYKGFEMEKALDYAIVASTLNVM T0375 291 :GFDGIV 2dcnA 291 :GDQENL Number of specific fragments extracted= 14 number of extra gaps= 1 total=510 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_578187134.pdb -s /var/tmp/to_scwrl_578187134.seq -o /var/tmp/from_scwrl_578187134.pdb > /var/tmp/scwrl_578187134.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_578187134.pdb Number of alignments=34 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2abqA/T0375-2abqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2abqA/T0375-2abqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2abqA read from 2abqA/T0375-2abqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2abqA in template set T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDK 2abqA 8 :NPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAP 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGG T0375 65 :HVADFVLDDLRRYSVDLRYTVF 2abqA 62 :FTGAYVRNALEKEEIGLSFIEV T0375 89 :TGSVPIATVII 2abqA 84 :EGDTRINVKIK T0375 102 :ASGSR 2abqA 95 :GKQET T0375 110 :YYDRSLPDVSATDFEKVD 2abqA 100 :ELNGTAPLIKKEHVQALL T0375 128 :LTQF 2abqA 120 :LTEL T0375 132 :KWIHIEGRNAS 2abqA 127 :DVLVLAGSVPQ T0375 143 :EQVKMLQRIDAHNTRQPPEQK 2abqA 143 :IYRSMTQIAKERGAFVAVDTS T0375 174 :REELFQLF 2abqA 164 :GEALHEVL T0375 182 :GYGDVVFVSKDVAKHL 2abqA 173 :AKPSFIKPNHHELSEL T0375 198 :GFQ 2abqA 190 :SKP T0375 201 :SAEEALRGLYGRVRKGA 2abqA 195 :SIEDAIPHVQRLIGEGI T0375 218 :VLVCAWAEEGADALGPD 2abqA 213 :SILVSFAGDGALFASAE T0375 236 :KLLHSDAF 2abqA 230 :GMFHVNVP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 238 :SGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 17 number of extra gaps= 0 total=527 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_691451546.pdb -s /var/tmp/to_scwrl_691451546.seq -o /var/tmp/from_scwrl_691451546.pdb > /var/tmp/scwrl_691451546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_691451546.pdb Number of alignments=35 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f02A/T0375-2f02A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2f02A/T0375-2f02A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f02A read from 2f02A/T0375-2f02A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f02A in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2f02A)S0 T0375 3 :QILCVG 2f02A 1 :LIVTVT T0375 9 :LVVLDVISLVDK 2f02A 8 :NPSIDISYLLDH T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAP 2f02A 20 :LKLDTVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLGG T0375 65 :HVADFVLDDLRRYSVDLRYTVF 2f02A 62 :FHGAFIANELKKANIPQAFTSI T0375 89 :TGSVPIATVIIN 2f02A 84 :KEETRDSIAILH T0375 103 :SGSRTILYYDR 2f02A 96 :EGNQTEILEAG T0375 116 :PDVSATDFEKVD 2f02A 107 :PTVSPEEISNFL T0375 128 :LTQFKWIHIEGRNA 2f02A 125 :IKQAEIVTISGSLA T0375 142 :S 2f02A 140 :G T0375 143 :EQVKMLQRIDAHNTRQPPEQKI 2f02A 145 :FYQELVQKAHAQEVKVLLDTSG T0375 175 :EELFQLFGY 2f02A 167 :DSLRQVLQG T0375 184 :GDVVFVSKDVAKHL 2f02A 179 :PYLIKPNLEELEGL T0375 198 :GFQ 2f02A 194 :GQD T0375 201 :SAEEALRGLY 2f02A 201 :PLAAVQTALT T0375 215 :KGA 2f02A 215 :AGI T0375 218 :VLVCAWAEEGADALGPD 2f02A 219 :WIVISLGKDGAIAKHHD T0375 236 :KLLHSDAF 2f02A 236 :QFYRVKIP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQ 2f02A 244 :TIQAKNPVGSGDATIAGLAYGLAKDAPAAELLKWGMAAGMANAQER Number of specific fragments extracted= 18 number of extra gaps= 0 total=545 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1578716907.pdb -s /var/tmp/to_scwrl_1578716907.seq -o /var/tmp/from_scwrl_1578716907.pdb > /var/tmp/scwrl_1578716907.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1578716907.pdb Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2absA/T0375-2absA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2absA/T0375-2absA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2absA read from 2absA/T0375-2absA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2absA in template set Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)K163 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)F199 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 Warning: unaligning (T0375)Q200 because of BadResidue code BAD_PEPTIDE at template residue (2absA)V237 Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2absA)N248 T0375 1 :GSQILCVGLVVLDVISLVD 2absA 12 :PMRVFAIGNPILDLVAEVP T0375 22 :PKEDSEIRCLSQ 2absA 39 :LKRGDATLATPE T0375 34 :RWQRGGNASNSCTILSLL 2absA 64 :TSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 2absA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 2absA 133 :EKERTLCTHLGACGSFR T0375 120 :ATDFEK 2absA 151 :PEDWTT T0375 127 :DLTQFKWIHIEGRN 2absA 157 :FASGALIFYATAYT T0375 141 :ASEQVKMLQRIDAH 2absA 175 :PKNALEVAGYAHGI T0375 155 :NTRQPPE 2absA 190 :NAIFTLN T0375 164 :IRVSV 2absA 199 :APFCV T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 2absA 204 :ELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :G 2absA 235 :N T0375 202 :AEEALRGLYGRVR 2absA 249 :KEHAVEVCTGALR T0375 215 :KG 2absA 265 :AG T0375 217 :A 2absA 272 :T T0375 218 :VLVCAWAEEGADAL 2absA 274 :LVVMTRGHNPVIAA T0375 232 :GPDGKLL 2absA 290 :TADGTVV T0375 239 :HSDAFP 2absA 299 :EVGVPV T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2absA 307 :AEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 20 number of extra gaps= 2 total=565 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_62299853.pdb -s /var/tmp/to_scwrl_62299853.seq -o /var/tmp/from_scwrl_62299853.pdb > /var/tmp/scwrl_62299853.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_62299853.pdb Number of alignments=37 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ajrA/T0375-2ajrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 2ajrA/T0375-2ajrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2ajrA read from 2ajrA/T0375-2ajrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2ajrA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2ajrA)H0 Warning: unaligning (T0375)V11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ajrA)L11 Warning: unaligning (T0375)L12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ajrA)L11 T0375 3 :QILCVG 2ajrA 1 :MVLTVT T0375 9 :LV 2ajrA 8 :NP T0375 13 :DVISLVDK 2ajrA 12 :DREIFIED T0375 22 :PKEDSEIRCLS 2ajrA 20 :FQVNRLYRIND T0375 33 :QRWQRGGNASNSCTILSLLGAPCAFMGSMAP 2ajrA 34 :TQMSPGGKGINVSIALSKLGVPSVATGFVGG T0375 65 :HVADFVLDDLRRY 2ajrA 65 :YMGKILVEELRKI T0375 78 :SVDLRYTVF 2ajrA 80 :LITTNFVYV T0375 89 :TGSVPIATVIINEASGSRTILYYDR 2ajrA 89 :EGETRENIEIIDEKNKTITAINFPG T0375 116 :PDVSATDFEKVD 2ajrA 114 :PDVTDMDVNHFL T0375 128 :LTQFKWIHIEGRNAS 2ajrA 132 :LSKVDCVVISGSIPP T0375 143 :EQVKMLQRIDAHNTRQPPEQ 2ajrA 152 :ICNELVRLARERGVFVFVEQ T0375 173 :PREELFQLF 2ajrA 172 :TPRLLERIY T0375 182 :GYGDVVFVS 2ajrA 184 :EFPNVVKPD T0375 197 :LGFQ 2ajrA 201 :LGVD T0375 201 :SAEEALRGLYGRVRK 2ajrA 207 :TFDDYVKLAEKLAEK T0375 217 :A 2ajrA 222 :S T0375 218 :VLVCAWAEEGADALGPD 2ajrA 224 :VSVVSYEVKNDIVATRE T0375 236 :KLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 2ajrA 241 :GVWLIRSKEEIDTSHLLGAGDAYVAGMVYYFIK T0375 269 :GRSVQEALRFGCQVAGKKCGLQG 2ajrA 275 :GANFLEMAKFGFASALAATRRKE Number of specific fragments extracted= 19 number of extra gaps= 1 total=584 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_2000033061.pdb -s /var/tmp/to_scwrl_2000033061.seq -o /var/tmp/from_scwrl_2000033061.pdb > /var/tmp/scwrl_2000033061.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2000033061.pdb Number of alignments=38 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tyyA/T0375-1tyyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 1tyyA/T0375-1tyyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tyyA read from 1tyyA/T0375-1tyyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 108 :ILYYDR 1tyyA 99 :FTYLVH T0375 114 :SLPDVSATDFEK 1tyyA 107 :ADTYVSPQDLPP T0375 128 :LTQFKWIHIE 1tyyA 119 :FRQYEWFYFS T0375 140 :NAS 1tyyA 133 :TDR T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 140 :ACLEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSAEE 1tyyA 198 :GASHWQD T0375 211 :GRVRKGA 1tyyA 208 :YLRDLGC T0375 218 :VLVCAWAEEGADALGPDG 1tyyA 216 :TTIISLGADGALLITAEG T0375 237 :LLHSDAF 1tyyA 234 :EFHFPAP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1tyyA 241 :RVDVVDTTGAGDAFVGGLLFTLSR T0375 269 :GRS 1tyyA 267 :CWD T0375 272 :VQEALRFGCQVAGKKCGLQGFDGI 1tyyA 273 :LAEAISNANACGAMAVTAKGAMTA Number of specific fragments extracted= 15 number of extra gaps= 0 total=599 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_1933084302.pdb -s /var/tmp/to_scwrl_1933084302.seq -o /var/tmp/from_scwrl_1933084302.pdb > /var/tmp/scwrl_1933084302.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1933084302.pdb Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ub0A/T0375-1ub0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0375 read from 1ub0A/T0375-1ub0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ub0A read from 1ub0A/T0375-1ub0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1ub0A in template set Warning: unaligning (T0375)V170 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ub0A)A116 Warning: unaligning (T0375)E226 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ub0A)E181 T0375 1 :GSQILCVGL 1ub0A 1 :MRVALTIAG T0375 34 :RWQRGGNAS 1ub0A 10 :SDSGGGAGV T0375 68 :DFVLDDLRRYSVDLRYTVF 1ub0A 19 :QADLKVFFRFGVYGTSALT T0375 96 :TVIINEASGSRTILYYDR 1ub0A 38 :LVTAQNTLGVQRVHLLPP T0375 120 :ATDFEKVDLT 1ub0A 59 :YAQIESVAQD T0375 130 :QFKWIHIEGRNA 1ub0A 70 :PLHAAKTGALGD T0375 142 :SEQVKMLQRIDAHNT 1ub0A 83 :AIVEAVAEAVRRFGV T0375 157 :RQPPEQ 1ub0A 99 :PLVVDP T0375 171 :EKPREELF 1ub0A 117 :KEAAAALK T0375 179 :QLFGYGDVVFVSKDVAKHL 1ub0A 126 :RLFPLADLVTPNRLEAEAL T0375 198 :GFQ 1ub0A 146 :GRP T0375 201 :SAEEALRGLYGRVRKGA 1ub0A 151 :TLKEAEEAAKALLALGP T0375 218 :VLVCAWAE 1ub0A 169 :AVLLKGGH T0375 228 :ADALGPD 1ub0A 184 :DLLATRG T0375 236 :KLLHSDAF 1ub0A 191 :GVLRFSAP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1ub0A 199 :RVHTRNTHGTGCTLSAAIAALLAKGRPLAEAVAEAKAYLTRALKT T0375 290 :Q 1ub0A 247 :L Number of specific fragments extracted= 17 number of extra gaps= 0 total=616 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 267 ; scwrl3 -i /var/tmp/to_scwrl_87522686.pdb -s /var/tmp/to_scwrl_87522686.seq -o /var/tmp/from_scwrl_87522686.pdb > /var/tmp/scwrl_87522686.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_87522686.pdb Number of alignments=40 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0375//projects/compbio/experiments/protein-predict/casp7/constraints/T0375/manyalignments.under or /projects/compbio/experiments/protein-predict/casp7/T0375//projects/compbio/experiments/protein-predict/casp7/constraints/T0375/manyalignments.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints/T0375/manyalignments.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints/T0375/manyalignments.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hdoA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0375 read from 1hdoA/merged-a2m # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)A202 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)E203 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)A224 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G232 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNS 1hdoA 5 :KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPR T0375 73 :DLRRYSVDLRYTVFQTTGSVPIATVIINEASG 1hdoA 47 :PAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR T0375 159 :PPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVA 1hdoA 79 :NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFL T0375 197 :LGFQS 1hdoA 115 :LWDPT T0375 204 :EALRGLYGRVRKGAVLVCAW 1hdoA 122 :PPRLQAVTDDHIRMHKVLRE T0375 233 :PDGKLLHSDAFPPP 1hdoA 144 :LKYVAVMPPHIGDQ T0375 249 :VDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1hdoA 158 :PLTGAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYPSHQY Number of specific fragments extracted= 7 number of extra gaps= 2 total=623 Number of alignments=41 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)S201 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G294 because last residue in template chain is (1hdoA)Y205 T0375 3 :QILCVG 1hdoA 5 :KIAIFG T0375 15 :ISLVDKYPKEDSEIRCLSQRWQRGGNASNS 1hdoA 17 :LTTLAQAVQAGYEVTVLVRDSSRLPSEGPR T0375 73 :DLRRYSVDLR 1hdoA 47 :PAHVVVGDVL T0375 83 :YTVFQ 1hdoA 62 :DKTVA T0375 93 :P 1hdoA 67 :G T0375 95 :ATVIINEASG 1hdoA 68 :QDAVIVLLGT T0375 159 :PPEQKIRVSVEVEKPREELFQLFGYGDVVFVSK 1hdoA 79 :NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS T0375 192 :DVAKHLGFQ 1hdoA 133 :IRMHKVLRE T0375 244 :PPPRVVDTLGAGDTF 1hdoA 158 :PLTGAYTVTLDGRGP T0375 260 :ASVIFSLSQGRSVQEALRFGC 1hdoA 173 :SRVISKHDLGHFMLRCLTTDE T0375 283 :AGKKCGLQGFD 1hdoA 194 :YDGHSTYPSHQ Number of specific fragments extracted= 11 number of extra gaps= 1 total=634 Number of alignments=42 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set T0375 216 :GAVLVCAWAEEGADALGPDGKLLHSDAFPPPRV 1hdoA 16 :GLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPA T0375 251 :TLGAGDTFNASVIFSLSQGRSV 1hdoA 49 :HVVVGDVLQAADVDKTVAGQDA Number of specific fragments extracted= 2 number of extra gaps= 0 total=636 Number of alignments=43 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)A202 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)E203 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)A224 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G232 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 107 :TILYYDRSLPDVSATDF 1hdoA 29 :EVTVLVRDSSRLPSEGP T0375 130 :QFKWIHIEGRNASEQVKMLQRIDA 1hdoA 47 :PAHVVVGDVLQAADVDKTVAGQDA T0375 154 :HN 1hdoA 76 :GT T0375 159 :PPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVA 1hdoA 79 :NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFL T0375 197 :LGFQS 1hdoA 115 :LWDPT T0375 204 :EAL 1hdoA 122 :PPR T0375 210 :YGRVRKGAVLVCAW 1hdoA 128 :VTDDHIRMHKVLRE T0375 233 :PDGKLL 1hdoA 144 :LKYVAV Number of specific fragments extracted= 8 number of extra gaps= 2 total=644 Number of alignments=44 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)Q200 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)S201 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)L231 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G232 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNS 1hdoA 3 :VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPR T0375 66 :VADFVLDDLR 1hdoA 47 :PAHVVVGDVL T0375 78 :SVDLRYTVFQ 1hdoA 57 :QAADVDKTVA T0375 93 :PIATVIINEASGS 1hdoA 67 :GQDAVIVLLGTRN T0375 157 :RQPPEQKIR 1hdoA 80 :DLSPTTVMS T0375 169 :EVEKPREELFQLFGYGDVVFVSKDVAKHLGF 1hdoA 89 :EGARNIVAAMKAHGVDKVVACTSAFLLWDPT T0375 202 :AE 1hdoA 122 :PP T0375 206 :LRGLYGRVRKGAVLVCA 1hdoA 124 :RLQAVTDDHIRMHKVLR T0375 230 :A 1hdoA 141 :E T0375 233 :PDGKLLHSDAFPPP 1hdoA 144 :LKYVAVMPPHIGDQ T0375 252 :LGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQ 1hdoA 158 :PLTGAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDG Number of specific fragments extracted= 11 number of extra gaps= 2 total=655 Number of alignments=45 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)Q200 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)S201 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)L231 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G232 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 2 :SQILCVGLVVL 1hdoA 4 :KKIAIFGATGQ T0375 15 :ISLVDKYPKEDSEIRCLSQRWQRGGNASNS 1hdoA 17 :LTTLAQAVQAGYEVTVLVRDSSRLPSEGPR T0375 68 :DFVLDDLRRY 1hdoA 49 :HVVVGDVLQA T0375 80 :DLRYTVFQ 1hdoA 59 :ADVDKTVA T0375 93 :PIATVIINEASGS 1hdoA 67 :GQDAVIVLLGTRN T0375 169 :EVEKPREELFQLFGYGDVVFVSKDVAKHLGF 1hdoA 89 :EGARNIVAAMKAHGVDKVVACTSAFLLWDPT T0375 202 :AE 1hdoA 122 :PP T0375 206 :LRGLYGRVRKGAVLVCA 1hdoA 124 :RLQAVTDDHIRMHKVLR T0375 230 :A 1hdoA 141 :E T0375 233 :PDGKLLHSDAFPPP 1hdoA 144 :LKYVAVMPPHIGDQ T0375 255 :GDTFNASVIFSLSQGRSVQ 1hdoA 178 :KHDLGHFMLRCLTTDEYDG T0375 290 :QGF 1hdoA 200 :YPS Number of specific fragments extracted= 12 number of extra gaps= 2 total=667 Number of alignments=46 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)Q200 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)S201 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 T0375 107 :TILYYDRSLPDVSATDFE 1hdoA 29 :EVTVLVRDSSRLPSEGPR T0375 130 :QFKWIHIEGRNASEQVKMLQRID 1hdoA 47 :PAHVVVGDVLQAADVDKTVAGQD T0375 153 :AHNTRQPPEQKIR 1hdoA 76 :GTRNDLSPTTVMS T0375 169 :EVEKPREELFQLFGYGDVVFVSKDVAKHLGF 1hdoA 89 :EGARNIVAAMKAHGVDKVVACTSAFLLWDPT T0375 202 :AE 1hdoA 122 :PP T0375 206 :LRGLYGRVRKGAVLVC 1hdoA 124 :RLQAVTDDHIRMHKVL Number of specific fragments extracted= 6 number of extra gaps= 1 total=673 Number of alignments=47 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)Q200 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)S201 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)L231 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G232 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 104 :GS 1hdoA 27 :GY T0375 107 :TILYYDRSLPDVSATDFE 1hdoA 29 :EVTVLVRDSSRLPSEGPR T0375 130 :QFKWIHIEGRNASEQVKMLQRIDA 1hdoA 47 :PAHVVVGDVLQAADVDKTVAGQDA T0375 154 :HNTRQPP 1hdoA 73 :VLLGTRN T0375 170 :VEKPREELFQLFGYGDVVFVSKDVAKHLGF 1hdoA 90 :GARNIVAAMKAHGVDKVVACTSAFLLWDPT T0375 202 :AE 1hdoA 122 :PP T0375 206 :LRGLYGRVRKGAVLVCA 1hdoA 124 :RLQAVTDDHIRMHKVLR T0375 230 :A 1hdoA 141 :E T0375 233 :PDGKLLHSDAFPPP 1hdoA 144 :LKYVAVMPPHIGDQ Number of specific fragments extracted= 9 number of extra gaps= 2 total=682 Number of alignments=48 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)L209 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)Y210 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)L231 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G232 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 1 :GSQILCVG 1hdoA 3 :VKKIAIFG T0375 16 :SLVDKYPKEDSEIRCLSQRWQR 1hdoA 18 :TTLAQAVQAGYEVTVLVRDSSR T0375 115 :LPDVSA 1hdoA 40 :LPSEGP T0375 129 :TQFKWIHIEGRNASEQVKMLQRIDA 1hdoA 46 :RPAHVVVGDVLQAADVDKTVAGQDA T0375 154 :HNTR 1hdoA 75 :LGTR T0375 159 :PPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKH 1hdoA 79 :NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLW T0375 206 :LRG 1hdoA 117 :DPT T0375 211 :GRVRKGAVLVCAWAEEGADA 1hdoA 122 :PPRLQAVTDDHIRMHKVLRE T0375 233 :PDGKLLHSDAFPPPRV 1hdoA 144 :LKYVAVMPPHIGDQPL T0375 251 :TLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1hdoA 160 :TGAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYPSHQY Number of specific fragments extracted= 10 number of extra gaps= 2 total=692 Number of alignments=49 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)L209 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)Y210 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)L231 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G232 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 1 :GSQILCVG 1hdoA 3 :VKKIAIFG T0375 15 :ISLVDKYPKEDSEIRCLSQRWQR 1hdoA 17 :LTTLAQAVQAGYEVTVLVRDSSR T0375 96 :TVIINEASGS 1hdoA 69 :DAVIVLLGTR T0375 159 :PPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKH 1hdoA 79 :NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLW T0375 206 :LRG 1hdoA 117 :DPT T0375 211 :GRVRKGAVLVCAWAEEGADA 1hdoA 122 :PPRLQAVTDDHIRMHKVLRE T0375 233 :PDGKLLHSDAFPPPRV 1hdoA 144 :LKYVAVMPPHIGDQPL T0375 251 :TLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1hdoA 160 :TGAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYPSHQY Number of specific fragments extracted= 8 number of extra gaps= 2 total=700 Number of alignments=50 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set T0375 151 :IDAHNTR 1hdoA 72 :IVLLGTR T0375 159 :PPEQKIRVSVEVEKPREELFQLFGYGDVVFVS 1hdoA 79 :NDLSPTTVMSEGARNIVAAMKAHGVDKVVACT Number of specific fragments extracted= 2 number of extra gaps= 0 total=702 Number of alignments=51 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)L209 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)Y210 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)L231 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G232 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 129 :TQFKWIHIEGRNASEQVKMLQRIDA 1hdoA 46 :RPAHVVVGDVLQAADVDKTVAGQDA T0375 154 :HNTR 1hdoA 75 :LGTR T0375 159 :PPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKH 1hdoA 79 :NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLW T0375 206 :LRG 1hdoA 117 :DPT T0375 211 :GRVRKGAVLVCAWAEEGADA 1hdoA 122 :PPRLQAVTDDHIRMHKVLRE T0375 233 :PDGKLLHSDAFPPPRV 1hdoA 144 :LKYVAVMPPHIGDQPL Number of specific fragments extracted= 6 number of extra gaps= 2 total=708 Number of alignments=52 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)F131 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)K132 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 1 :GSQILCVG 1hdoA 3 :VKKIAIFG T0375 38 :GGNASNSCTILSLLGAPCAFMGSMA 1hdoA 13 :GQTGLTTLAQAVQAGYEVTVLVRDS T0375 63 :PGHVADF 1hdoA 49 :HVVVGDV T0375 70 :VLDDLRR 1hdoA 60 :DVDKTVA T0375 80 :DLRYTVFQTTG 1hdoA 67 :GQDAVIVLLGT T0375 91 :SVPIATVIINEAS 1hdoA 87 :MSEGARNIVAAMK T0375 104 :GSRTILYYDRSL 1hdoA 102 :GVDKVVACTSAF T0375 116 :PDVSATDFEK 1hdoA 128 :VTDDHIRMHK T0375 127 :DLTQ 1hdoA 138 :VLRE T0375 133 :W 1hdoA 144 :L T0375 134 :IHIEGR 1hdoA 146 :YVAVMP T0375 242 :AFPPPRVVDTLGAGDTFNASVIFSL 1hdoA 168 :DGRGPSRVISKHDLGHFMLRCLTTD Number of specific fragments extracted= 12 number of extra gaps= 1 total=720 Number of alignments=53 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)C55 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)A56 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)Y77 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)S78 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 14 :V 1hdoA 82 :S T0375 28 :IRCLSQRW 1hdoA 91 :ARNIVAAM T0375 36 :QRGGNASNSCTILSLLGAP 1hdoA 101 :HGVDKVVACTSAFLLWDPT T0375 57 :FMGSMAPGHVADFVLDDLRR 1hdoA 122 :PPRLQAVTDDHIRMHKVLRE T0375 86 :FQTTGSVP 1hdoA 144 :LKYVAVMP T0375 243 :FPPPRVVDTLGAGDTFNASVIFS 1hdoA 169 :GRGPSRVISKHDLGHFMLRCLTT Number of specific fragments extracted= 6 number of extra gaps= 2 total=726 Number of alignments=54 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set T0375 63 :PGHVADFVLDDLRRYSVDLR 1hdoA 151 :PPHIGDQPLTGAYTVTLDGR Number of specific fragments extracted= 1 number of extra gaps= 0 total=727 Number of alignments=55 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=727 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)S2 because first residue in template chain is (1hdoA)M1 Warning: unaligning (T0375)Q3 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)A2 Warning: unaligning (T0375)P173 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)R174 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)R212 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)V213 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 Warning: unaligning (T0375)F278 because last residue in template chain is (1hdoA)Y205 T0375 4 :I 1hdoA 3 :V T0375 53 :APCAFMGSMA 1hdoA 4 :KKIAIFGATG T0375 76 :RYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1hdoA 14 :QTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLS T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEVEK 1hdoA 92 :RNIVAAMKAHGVDKVVACTSAFLLWDPT T0375 175 :EELFQLFG 1hdoA 122 :PPRLQAVT T0375 200 :QSAEEALRGLYG 1hdoA 130 :DDHIRMHKVLRE T0375 216 :GAVLVCAWAEEGADALG 1hdoA 144 :LKYVAVMPPHIGDQPLT T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALR 1hdoA 161 :GAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYPSHQ Number of specific fragments extracted= 8 number of extra gaps= 2 total=735 Number of alignments=56 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)P173 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)R174 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)R212 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)V213 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 2 :SQILCVGLV 1hdoA 4 :KKIAIFGAT T0375 38 :GGNASNSCTILSLLGAPCAFM 1hdoA 13 :GQTGLTTLAQAVQAGYEVTVL T0375 85 :VFQTTGSV 1hdoA 34 :VRDSSRLP T0375 102 :ASGSRTILYYDR 1hdoA 42 :SEGPRPAHVVVG T0375 116 :PDVSATDFEKVDLT 1hdoA 54 :DVLQAADVDKTVAG T0375 130 :QFKWIHIEGRNASEQ 1hdoA 69 :DAVIVLLGTRNDLSP T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEVEK 1hdoA 92 :RNIVAAMKAHGVDKVVACTSAFLLWDPT T0375 175 :EELFQLF 1hdoA 122 :PPRLQAV T0375 199 :FQSAEEALRGLYG 1hdoA 129 :TDDHIRMHKVLRE T0375 216 :GAVLVCAWAE 1hdoA 144 :LKYVAVMPPH T0375 226 :EGADALGPDGK 1hdoA 160 :TGAYTVTLDGR T0375 244 :PPPRVVDTLGA 1hdoA 171 :GPSRVISKHDL T0375 260 :ASVIFSLSQ 1hdoA 182 :GHFMLRCLT T0375 286 :KCGLQGFDGI 1hdoA 191 :TDEYDGHSTY Number of specific fragments extracted= 14 number of extra gaps= 2 total=749 Number of alignments=57 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)S2 because first residue in template chain is (1hdoA)M1 Warning: unaligning (T0375)R212 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)V213 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 3 :QILCVG 1hdoA 5 :KIAIFG T0375 63 :PGHVADFVLDDLRRYSVDLRYTVFQTTGSV 1hdoA 12 :TGQTGLTTLAQAVQAGYEVTVLVRDSSRLP T0375 102 :ASGSRTILYYDR 1hdoA 42 :SEGPRPAHVVVG T0375 117 :DVSATDFEKV 1hdoA 55 :VLQAADVDKT T0375 128 :LTQFKWIHIEGRNASEQ 1hdoA 65 :VAGQDAVIVLLGTRNDL T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEV 1hdoA 92 :RNIVAAMKAHGVDKVVACTSAFLLWD T0375 171 :EKPREELFQ 1hdoA 122 :PPRLQAVTD T0375 201 :SAEEALRGLYG 1hdoA 131 :DHIRMHKVLRE T0375 216 :GAVLVCAWAE 1hdoA 144 :LKYVAVMPPH T0375 226 :EGADALGPDGK 1hdoA 160 :TGAYTVTLDGR T0375 244 :PPPRVVDTL 1hdoA 171 :GPSRVISKH T0375 258 :FNASVIF 1hdoA 180 :DLGHFML T0375 285 :KKCGLQGFDGI 1hdoA 187 :RCLTTDEYDGH Number of specific fragments extracted= 13 number of extra gaps= 1 total=762 Number of alignments=58 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)S2 because first residue in template chain is (1hdoA)M1 Warning: unaligning (T0375)K172 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)P173 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)R212 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)V213 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 3 :QILCVG 1hdoA 5 :KIAIFG T0375 38 :GGNASNSCTILSLLGAPCAFMG 1hdoA 13 :GQTGLTTLAQAVQAGYEVTVLV T0375 86 :FQTTGS 1hdoA 35 :RDSSRL T0375 101 :EASGSRTILYYDR 1hdoA 41 :PSEGPRPAHVVVG T0375 114 :SL 1hdoA 55 :VL T0375 119 :SATDFEKV 1hdoA 57 :QAADVDKT T0375 128 :LTQFKWIHIEGRNASEQ 1hdoA 65 :VAGQDAVIVLLGTRNDL T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEV 1hdoA 92 :RNIVAAMKAHGVDKVVACTSAFLLWD T0375 171 :E 1hdoA 119 :T T0375 174 :REELFQLFG 1hdoA 122 :PPRLQAVTD T0375 201 :SAEEALRGLYG 1hdoA 131 :DHIRMHKVLRE T0375 216 :GAVLVCAWAE 1hdoA 144 :LKYVAVMPPH T0375 226 :EGADALG 1hdoA 161 :GAYTVTL T0375 234 :DGK 1hdoA 168 :DGR T0375 244 :PPPRVVD 1hdoA 171 :GPSRVIS T0375 276 :LRFGCQVAGKKCGLQGFDGI 1hdoA 178 :KHDLGHFMLRCLTTDEYDGH Number of specific fragments extracted= 16 number of extra gaps= 2 total=778 Number of alignments=59 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)R212 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)V213 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 200 :QSAEEALRGLYG 1hdoA 130 :DDHIRMHKVLRE T0375 216 :GAVLVCAWAE 1hdoA 144 :LKYVAVMPPH T0375 226 :EGADALGPDGK 1hdoA 160 :TGAYTVTLDGR Number of specific fragments extracted= 3 number of extra gaps= 1 total=781 Number of alignments=60 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)P173 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)R174 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)R212 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)V213 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 117 :DVSATDFEKVDLT 1hdoA 55 :VLQAADVDKTVAG T0375 130 :QFKWIHIEGRNASEQ 1hdoA 69 :DAVIVLLGTRNDLSP T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEVEK 1hdoA 92 :RNIVAAMKAHGVDKVVACTSAFLLWDPT T0375 175 :EELFQLF 1hdoA 122 :PPRLQAV T0375 199 :FQSAEEALRGLYG 1hdoA 129 :TDDHIRMHKVLRE T0375 216 :GAVLVCAWAE 1hdoA 144 :LKYVAVMPPH T0375 226 :EGADALGPDGK 1hdoA 160 :TGAYTVTLDGR Number of specific fragments extracted= 7 number of extra gaps= 2 total=788 Number of alignments=61 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)R212 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)V213 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 54 :PCAFMGSM 1hdoA 5 :KIAIFGAT T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTTGSV 1hdoA 13 :GQTGLTTLAQAVQAGYEVTVLVRDSSRLP T0375 102 :ASGSRTILYYDR 1hdoA 42 :SEGPRPAHVVVG T0375 117 :DVSATDFEKV 1hdoA 55 :VLQAADVDKT T0375 128 :LTQFKWIHIEGRNASEQ 1hdoA 65 :VAGQDAVIVLLGTRNDL T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEV 1hdoA 92 :RNIVAAMKAHGVDKVVACTSAFLLWD T0375 171 :EKPREELFQ 1hdoA 122 :PPRLQAVTD T0375 201 :SAEEALRGLYG 1hdoA 131 :DHIRMHKVLRE T0375 216 :GAVLVCAWAE 1hdoA 144 :LKYVAVMPPH T0375 226 :EGADALGPDGK 1hdoA 160 :TGAYTVTLDGR T0375 244 :PPPRVVDTL 1hdoA 171 :GPSRVISKH T0375 258 :FNASVIFS 1hdoA 180 :DLGHFMLR Number of specific fragments extracted= 12 number of extra gaps= 1 total=800 Number of alignments=62 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)K172 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)P173 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)R212 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)V213 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 2 :SQILCVG 1hdoA 4 :KKIAIFG T0375 63 :PGHVADFVLDDLRRYSVDLRYTVFQTTGS 1hdoA 12 :TGQTGLTTLAQAVQAGYEVTVLVRDSSRL T0375 101 :EASGSRTILYYDR 1hdoA 41 :PSEGPRPAHVVVG T0375 114 :SL 1hdoA 55 :VL T0375 119 :SATDFEKV 1hdoA 57 :QAADVDKT T0375 128 :LTQFKWIHIEGRNASEQ 1hdoA 65 :VAGQDAVIVLLGTRNDL T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEV 1hdoA 92 :RNIVAAMKAHGVDKVVACTSAFLLWD T0375 171 :E 1hdoA 119 :T T0375 174 :REELFQLFG 1hdoA 122 :PPRLQAVTD T0375 201 :SAEEALRGLYG 1hdoA 131 :DHIRMHKVLRE T0375 216 :GAVLVCAWAE 1hdoA 144 :LKYVAVMPPH T0375 226 :EGADALG 1hdoA 161 :GAYTVTL T0375 234 :DGK 1hdoA 168 :DGR T0375 244 :PPPRVVDT 1hdoA 171 :GPSRVISK T0375 277 :RFGCQVAGKKCGLQ 1hdoA 179 :HDLGHFMLRCLTTD Number of specific fragments extracted= 15 number of extra gaps= 2 total=815 Number of alignments=63 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)P173 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)R174 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G216 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 Warning: unaligning (T0375)F278 because last residue in template chain is (1hdoA)Y205 T0375 1 :GSQILCVGLVV 1hdoA 3 :VKKIAIFGATG T0375 65 :HVADFVLDDLRRYSVDLRYTVFQTTGS 1hdoA 14 :QTGLTTLAQAVQAGYEVTVLVRDSSRL T0375 101 :EASGSRTILYYDR 1hdoA 41 :PSEGPRPAHVVVG T0375 116 :PDVSATDFEKVDLTQFKWIHIEGRNAS 1hdoA 54 :DVLQAADVDKTVAGQDAVIVLLGTRND T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEVEK 1hdoA 90 :GARNIVAAMKAHGVDKVVACTSAFLLWDPT T0375 175 :EELFQLF 1hdoA 122 :PPRLQAV T0375 202 :AEEALRGLYGRVR 1hdoA 129 :TDDHIRMHKVLRE T0375 217 :A 1hdoA 144 :L T0375 218 :VLVCAWAEEGADALGPD 1hdoA 146 :YVAVMPPHIGDQPLTGA T0375 236 :KLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALR 1hdoA 163 :YTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYPSHQ Number of specific fragments extracted= 10 number of extra gaps= 2 total=825 Number of alignments=64 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)P173 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)R174 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G216 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 1 :GSQILCVGLVVLD 1hdoA 3 :VKKIAIFGATGQT T0375 41 :ASNSCTILSLLGAPCAF 1hdoA 16 :GLTTLAQAVQAGYEVTV T0375 84 :TVFQTTGS 1hdoA 33 :LVRDSSRL T0375 101 :EASGSRTILYYDR 1hdoA 41 :PSEGPRPAHVVVG T0375 116 :PDVSATDFEKVDLT 1hdoA 54 :DVLQAADVDKTVAG T0375 130 :QFKWIHIEGRN 1hdoA 69 :DAVIVLLGTRN T0375 142 :S 1hdoA 80 :D T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEVEK 1hdoA 90 :GARNIVAAMKAHGVDKVVACTSAFLLWDPT T0375 175 :EELFQLF 1hdoA 122 :PPRLQAV T0375 202 :AEEALRGLYGRVR 1hdoA 129 :TDDHIRMHKVLRE T0375 217 :A 1hdoA 144 :L T0375 218 :VLVCAWAEEGADALGPDG 1hdoA 146 :YVAVMPPHIGDQPLTGAY T0375 237 :LLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQG 1hdoA 164 :TVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDG T0375 290 :QGFDGIV 1hdoA 197 :HSTYPSH Number of specific fragments extracted= 14 number of extra gaps= 2 total=839 Number of alignments=65 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)G1 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)A2 Warning: unaligning (T0375)S2 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)A2 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G216 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 3 :QILCVG 1hdoA 5 :KIAIFG T0375 63 :PGHVADFVLDDLRRYSVDLRYTVFQTTGS 1hdoA 12 :TGQTGLTTLAQAVQAGYEVTVLVRDSSRL T0375 101 :EASGSRTILYYDR 1hdoA 41 :PSEGPRPAHVVVG T0375 116 :PDVSATDFEKVD 1hdoA 54 :DVLQAADVDKTV T0375 129 :TQFKWIHIEGRNAS 1hdoA 66 :AGQDAVIVLLGTRN T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1hdoA 90 :GARNIVAAMKAHGVDKVVACTSAFLLWD T0375 171 :EKPREEL 1hdoA 122 :PPRLQAV T0375 202 :AEEALRGLYGRVR 1hdoA 129 :TDDHIRMHKVLRE T0375 217 :A 1hdoA 144 :L T0375 218 :VLVCAWAE 1hdoA 146 :YVAVMPPH T0375 226 :EGADALGPDGK 1hdoA 160 :TGAYTVTLDGR T0375 244 :PPPRVVDTL 1hdoA 171 :GPSRVISKH T0375 258 :FNASVIF 1hdoA 180 :DLGHFML T0375 286 :KCGLQGFDGIV 1hdoA 187 :RCLTTDEYDGH Number of specific fragments extracted= 14 number of extra gaps= 1 total=853 Number of alignments=66 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)G1 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)A2 Warning: unaligning (T0375)S2 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)A2 Warning: unaligning (T0375)R212 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G216 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 3 :QILCVG 1hdoA 5 :KIAIFG T0375 38 :GGNASNSCTILSLLGAPCAFMGS 1hdoA 13 :GQTGLTTLAQAVQAGYEVTVLVR T0375 61 :MAPG 1hdoA 40 :LPSE T0375 78 :SVDLRYTVFQT 1hdoA 44 :GPRPAHVVVGD T0375 114 :SL 1hdoA 55 :VL T0375 119 :SATDFEKV 1hdoA 57 :QAADVDKT T0375 128 :LTQFKWIHIEGRNAS 1hdoA 65 :VAGQDAVIVLLGTRN T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1hdoA 90 :GARNIVAAMKAHGVDKVVACTSAFLLWD T0375 171 :EKPREELFQLF 1hdoA 123 :PRLQAVTDDHI T0375 204 :EALRGLYG 1hdoA 134 :RMHKVLRE T0375 217 :AVLVCAWAE 1hdoA 144 :LKYVAVMPP T0375 226 :EGADALG 1hdoA 161 :GAYTVTL T0375 234 :DG 1hdoA 168 :DG T0375 241 :D 1hdoA 170 :R T0375 244 :PPPRVVD 1hdoA 171 :GPSRVIS T0375 276 :LRFGCQVAGKKCGLQGFDGI 1hdoA 178 :KHDLGHFMLRCLTTDEYDGH Number of specific fragments extracted= 16 number of extra gaps= 1 total=869 Number of alignments=67 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G216 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 203 :EEALRGLYGRVR 1hdoA 130 :DDHIRMHKVLRE T0375 217 :A 1hdoA 144 :L T0375 218 :VLVCAWAEEGADALGP 1hdoA 146 :YVAVMPPHIGDQPLTG Number of specific fragments extracted= 3 number of extra gaps= 1 total=872 Number of alignments=68 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)P173 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)R174 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G216 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 111 :YDR 1hdoA 51 :VVG T0375 116 :PDVSATDFEKVDLT 1hdoA 54 :DVLQAADVDKTVAG T0375 130 :QFKWIHIEGRN 1hdoA 69 :DAVIVLLGTRN T0375 142 :S 1hdoA 80 :D T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEVEK 1hdoA 90 :GARNIVAAMKAHGVDKVVACTSAFLLWDPT T0375 175 :EELFQLF 1hdoA 122 :PPRLQAV T0375 202 :AEEALRGLYGRVR 1hdoA 129 :TDDHIRMHKVLRE T0375 217 :A 1hdoA 144 :L T0375 218 :VLVCAWAEEGADALGPDG 1hdoA 146 :YVAVMPPHIGDQPLTGAY T0375 237 :LLHS 1hdoA 164 :TVTL Number of specific fragments extracted= 10 number of extra gaps= 2 total=882 Number of alignments=69 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G216 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 2 :SQILCVG 1hdoA 4 :KKIAIFG T0375 63 :PGHVADFVLDDLRRYSVDLRYTVFQTTGS 1hdoA 12 :TGQTGLTTLAQAVQAGYEVTVLVRDSSRL T0375 101 :EASGSRTILYYDR 1hdoA 41 :PSEGPRPAHVVVG T0375 116 :PDVSATDFEKVD 1hdoA 54 :DVLQAADVDKTV T0375 129 :TQFKWIHIEGRNAS 1hdoA 66 :AGQDAVIVLLGTRN T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1hdoA 90 :GARNIVAAMKAHGVDKVVACTSAFLLWD T0375 171 :EKPREEL 1hdoA 122 :PPRLQAV T0375 202 :AEEALRGLYGRVR 1hdoA 129 :TDDHIRMHKVLRE T0375 217 :A 1hdoA 144 :L T0375 218 :VLVCAWAE 1hdoA 146 :YVAVMPPH T0375 226 :EGADALGPDGK 1hdoA 160 :TGAYTVTLDGR T0375 244 :PPPRVVDTL 1hdoA 171 :GPSRVISKH T0375 258 :FNASVIFS 1hdoA 180 :DLGHFMLR Number of specific fragments extracted= 13 number of extra gaps= 1 total=895 Number of alignments=70 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)R212 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G216 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 2 :SQILCVG 1hdoA 4 :KKIAIFG T0375 38 :GGNASNSCTILSLLGAPCAFMGS 1hdoA 13 :GQTGLTTLAQAVQAGYEVTVLVR T0375 61 :MAPG 1hdoA 40 :LPSE T0375 78 :SVDLRYTVFQT 1hdoA 44 :GPRPAHVVVGD T0375 114 :SL 1hdoA 55 :VL T0375 119 :SATDFEKV 1hdoA 57 :QAADVDKT T0375 128 :LTQFKWIHIEGRNAS 1hdoA 65 :VAGQDAVIVLLGTRN T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1hdoA 90 :GARNIVAAMKAHGVDKVVACTSAFLLWD T0375 171 :EKPREELFQLF 1hdoA 123 :PRLQAVTDDHI T0375 204 :EALRGLYG 1hdoA 134 :RMHKVLRE T0375 217 :AVLVCAWAE 1hdoA 144 :LKYVAVMPP T0375 226 :EGADALG 1hdoA 161 :GAYTVTL T0375 234 :DG 1hdoA 168 :DG T0375 241 :D 1hdoA 170 :R T0375 244 :PPPRVVD 1hdoA 171 :GPSRVIS T0375 276 :LRFGCQVAGKKCGLQGF 1hdoA 178 :KHDLGHFMLRCLTTDEY Number of specific fragments extracted= 16 number of extra gaps= 1 total=911 Number of alignments=71 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)G1 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)A2 Warning: unaligning (T0375)L180 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)F181 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 Warning: unaligning (T0375)K236 because last residue in template chain is (1hdoA)Y205 T0375 2 :SQILCVGLV 1hdoA 4 :KKIAIFGAT T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTTGSV 1hdoA 13 :GQTGLTTLAQAVQAGYEVTVLVRDSSRLP T0375 101 :EASGSRTILYYDR 1hdoA 42 :SEGPRPAHVVVGD T0375 117 :DVSATDFEKVDLTQFKWIHIEGRNASE 1hdoA 55 :VLQAADVDKTVAGQDAVIVLLGTRNDL T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1hdoA 89 :EGARNIVAAMKAHGVDKVVACTSAFLLW T0375 172 :KPREELFQ 1hdoA 134 :RMHKVLRE T0375 182 :GYGDVVFVSKDVAKHLGFQ 1hdoA 144 :LKYVAVMPPHIGDQPLTGA T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1hdoA 170 :RGPSRVISKHDLGHFMLRCLTTDEYDGHSTYPSHQ Number of specific fragments extracted= 8 number of extra gaps= 1 total=919 Number of alignments=72 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)G1 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)A2 Warning: unaligning (T0375)E175 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)V121 Warning: unaligning (T0375)E176 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)V121 Warning: unaligning (T0375)L197 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)G198 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 Warning: unaligning (T0375)F278 because last residue in template chain is (1hdoA)Y205 T0375 2 :S 1hdoA 4 :K T0375 54 :PCAFMGSMAP 1hdoA 5 :KIAIFGATGQ T0375 66 :VADFVLDDLRRYSVDLRYTVFQTTGS 1hdoA 15 :TGLTTLAQAVQAGYEVTVLVRDSSRL T0375 100 :NEASGSRTILYYDR 1hdoA 41 :PSEGPRPAHVVVGD T0375 117 :DVSATDFEKVDLTQFKWIHIEGRNASE 1hdoA 55 :VLQAADVDKTVAGQDAVIVLLGTRNDL T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1hdoA 89 :EGARNIVAAMKAHGVDKVVACTSA T0375 174 :R 1hdoA 119 :T T0375 177 :LFQLFGYGDVVFVSKDVAKH 1hdoA 122 :PPRLQAVTDDHIRMHKVLRE T0375 199 :FQ 1hdoA 144 :LK T0375 212 :RVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVD 1hdoA 157 :QPLTGAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYD T0375 269 :GRSVQEALR 1hdoA 196 :GHSTYPSHQ Number of specific fragments extracted= 11 number of extra gaps= 2 total=930 Number of alignments=73 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)G1 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)A2 Warning: unaligning (T0375)R214 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 Warning: unaligning (T0375)I295 because last residue in template chain is (1hdoA)Y205 T0375 2 :SQILCVGL 1hdoA 4 :KKIAIFGA T0375 37 :RGGNASNSCTILSLLGAPCAFM 1hdoA 12 :TGQTGLTTLAQAVQAGYEVTVL T0375 85 :VFQTTGS 1hdoA 34 :VRDSSRL T0375 100 :NEASGSRTILYYDRS 1hdoA 41 :PSEGPRPAHVVVGDV T0375 119 :SATDFEKVDLTQFKWIHIEGRNASE 1hdoA 56 :LQAADVDKTVAGQDAVIVLLGTRND T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1hdoA 89 :EGARNIVAAMKAHGVDKVVACTSAFLLW T0375 172 :KPREELFQL 1hdoA 124 :RLQAVTDDH T0375 205 :ALRGLYGRV 1hdoA 133 :IRMHKVLRE T0375 216 :GAVLVCAW 1hdoA 144 :LKYVAVMP T0375 225 :EEGADALGPDGKL 1hdoA 159 :LTGAYTVTLDGRG T0375 245 :PPRVVD 1hdoA 172 :PSRVIS T0375 259 :NASVIFSL 1hdoA 181 :LGHFMLRC T0375 267 :SQGRS 1hdoA 194 :YDGHS T0375 294 :G 1hdoA 204 :Q Number of specific fragments extracted= 14 number of extra gaps= 1 total=944 Number of alignments=74 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)G1 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)A2 Warning: unaligning (T0375)R214 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 Warning: unaligning (T0375)I295 because last residue in template chain is (1hdoA)Y205 T0375 2 :SQILCVGL 1hdoA 4 :KKIAIFGA T0375 37 :RGGNASNSCTILSLLGAPCAFMGSMA 1hdoA 12 :TGQTGLTTLAQAVQAGYEVTVLVRDS T0375 82 :RYT 1hdoA 38 :SRL T0375 100 :NEASGSRTILYYDRS 1hdoA 41 :PSEGPRPAHVVVGDV T0375 118 :VSATDFEK 1hdoA 56 :LQAADVDK T0375 127 :DLTQFKWIHIEGRNASE 1hdoA 64 :TVAGQDAVIVLLGTRND T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1hdoA 89 :EGARNIVAAMKAHGVDKVVACTSAFLLW T0375 172 :KPREELFQLF 1hdoA 124 :RLQAVTDDHI T0375 206 :LRGLYGRV 1hdoA 134 :RMHKVLRE T0375 216 :GAVLVCAWA 1hdoA 144 :LKYVAVMPP T0375 236 :KLLHSDAFPPPRVV 1hdoA 164 :TVTLDGRGPSRVIS T0375 257 :TFNASVIFSL 1hdoA 179 :HDLGHFMLRC T0375 267 :SQGRS 1hdoA 194 :YDGHS T0375 293 :DG 1hdoA 203 :HQ Number of specific fragments extracted= 14 number of extra gaps= 1 total=958 Number of alignments=75 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set T0375 86 :FQTTGSVPIATVIINEASGSRTI 1hdoA 154 :IGDQPLTGAYTVTLDGRGPSRVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=959 Number of alignments=76 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)Y77 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)S78 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 68 :DFVLDDLRR 1hdoA 133 :IRMHKVLRE T0375 79 :VD 1hdoA 144 :LK T0375 218 :VL 1hdoA 146 :YV Number of specific fragments extracted= 3 number of extra gaps= 1 total=962 Number of alignments=77 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)R214 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 2 :SQILCVGL 1hdoA 4 :KKIAIFGA T0375 61 :MA 1hdoA 12 :TG T0375 65 :HVADFVLDDLRRYSVDLRYTVFQTTGSV 1hdoA 14 :QTGLTTLAQAVQAGYEVTVLVRDSSRLP T0375 101 :EASGSRTILYYDRS 1hdoA 42 :SEGPRPAHVVVGDV T0375 119 :SATDFEKVDLTQFKWIHIEGRNASE 1hdoA 56 :LQAADVDKTVAGQDAVIVLLGTRND T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1hdoA 89 :EGARNIVAAMKAHGVDKVVACTSAFLLW T0375 172 :KPREELFQL 1hdoA 124 :RLQAVTDDH T0375 205 :ALRGLYGRV 1hdoA 133 :IRMHKVLRE T0375 216 :GAVLVCA 1hdoA 144 :LKYVAVM Number of specific fragments extracted= 9 number of extra gaps= 1 total=971 Number of alignments=78 # 1hdoA read from 1hdoA/merged-a2m # found chain 1hdoA in training set Warning: unaligning (T0375)R214 because of BadResidue code BAD_PEPTIDE in next template residue (1hdoA)G143 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE at template residue (1hdoA)G143 T0375 2 :SQILCVGL 1hdoA 4 :KKIAIFGA T0375 37 :RGGNASNSCTILSLLGAPCAFMGSMA 1hdoA 12 :TGQTGLTTLAQAVQAGYEVTVLVRDS T0375 82 :RYT 1hdoA 38 :SRL T0375 100 :NEASGSRTILYYDRS 1hdoA 41 :PSEGPRPAHVVVGDV T0375 118 :VSATDFEK 1hdoA 56 :LQAADVDK T0375 127 :DLTQFKWIHIEGRNASE 1hdoA 64 :TVAGQDAVIVLLGTRND T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1hdoA 89 :EGARNIVAAMKAHGVDKVVACTSAFLLW T0375 172 :KPREELFQLF 1hdoA 124 :RLQAVTDDHI T0375 206 :LRGLYGRV 1hdoA 134 :RMHKVLRE T0375 216 :GAVLVCA 1hdoA 144 :LKYVAVM Number of specific fragments extracted= 10 number of extra gaps= 1 total=981 Number of alignments=79 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ax3A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2ax3A expands to /projects/compbio/data/pdb/2ax3.pdb.gz 2ax3A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 802, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 804, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 806, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 808, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 810, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 812, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 814, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 816, because occupancy 0.500 <= existing 0.500 in 2ax3A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1696, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 1698, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 1700, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 1702, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 1704, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 1706, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 1708, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 1710, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 1712, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 1714, because occupancy 0.500 <= existing 0.500 in 2ax3A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2139, because occupancy 0.400 <= existing 0.600 in 2ax3A Skipped atom 2143, because occupancy 0.400 <= existing 0.600 in 2ax3A Skipped atom 2145, because occupancy 0.400 <= existing 0.600 in 2ax3A Skipped atom 2147, because occupancy 0.400 <= existing 0.600 in 2ax3A Skipped atom 2149, because occupancy 0.400 <= existing 0.600 in 2ax3A Skipped atom 2282, because occupancy 0.400 <= existing 0.600 in 2ax3A Skipped atom 2286, because occupancy 0.400 <= existing 0.600 in 2ax3A Skipped atom 2288, because occupancy 0.400 <= existing 0.600 in 2ax3A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3191, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 3195, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 3197, because occupancy 0.500 <= existing 0.500 in 2ax3A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 3535, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 3539, because occupancy 0.500 <= existing 0.500 in 2ax3A Skipped atom 3541, because occupancy 0.500 <= existing 0.500 in 2ax3A # T0375 read from 2ax3A/merged-a2m # 2ax3A read from 2ax3A/merged-a2m # adding 2ax3A to template set # found chain 2ax3A in template set Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 1 :GSQILCVGLVVLDVISL 2ax3A 182 :FPGRDLTGKLKVANIGH T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 2ax3A 199 :PVHLINSINRYVITREMVRSLLPERPRDSHKGTYGKVLIIAGSRLY T0375 68 :DFVLDDLRRYSVDLRYTVFQTTG 2ax3A 247 :APVLSGMGSLKVGTGLVKLAVPF T0375 92 :VPIATVIINEASGSRTILYYDR 2ax3A 270 :PQNLIATSRFPELISVPIDTEK T0375 116 :PDVSATDFEKV 2ax3A 292 :GFFSLQNLQEC T0375 127 :DLTQFKWIHI 2ax3A 305 :LSKDVDVVAI T0375 137 :EGRNASEQVKMLQRIDAHNTRQPP 2ax3A 318 :LGNNEHVREFVNEFLKTLEKPAVI T0375 163 :KIRVS 2ax3A 344 :DAINV T0375 172 :KPREELFQLFG 2ax3A 349 :LDTSVLKERKS T0375 184 :GDVVF 2ax3A 360 :PAVLT T0375 191 :KDVAKHLGF 2ax3A 368 :GEMARLVKK T0375 200 :QSAEEALRGLYGRV 2ax3A 382 :KYNYELAEEFAKEN T0375 217 :AVLVCAWAEEGA 2ax3A 396 :DCVLVLKSATTI T0375 230 :ALGPDG 2ax3A 408 :VTDGEK T0375 237 :LLHSDAFP 2ax3A 414 :TLFNITGN T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2ax3A 422 :TGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDERG Number of specific fragments extracted= 16 number of extra gaps= 2 total=997 Number of alignments=80 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 1 :GSQILCVGLVVLDVISL 2ax3A 182 :FPGRDLTGKLKVANIGH T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 2ax3A 199 :PVHLINSINRYVITREMVRSLLPERPRDSHKGTYGKVLIIAGSRLY T0375 68 :DFVLDDLRRYSVDLRYTVFQTTG 2ax3A 247 :APVLSGMGSLKVGTGLVKLAVPF T0375 92 :VPIATVIINEASGSRTILYYDR 2ax3A 270 :PQNLIATSRFPELISVPIDTEK T0375 116 :PDVSATDFEKV 2ax3A 292 :GFFSLQNLQEC T0375 127 :DLTQFKWIHI 2ax3A 305 :LSKDVDVVAI T0375 138 :GR 2ax3A 315 :GP T0375 140 :NASEQVKMLQRIDAHNTRQPP 2ax3A 321 :NEHVREFVNEFLKTLEKPAVI T0375 163 :KIRVS 2ax3A 344 :DAINV T0375 172 :KPREELFQLFG 2ax3A 349 :LDTSVLKERKS T0375 184 :GDVVF 2ax3A 360 :PAVLT T0375 191 :KD 2ax3A 367 :PG T0375 193 :VAKHLGF 2ax3A 370 :MARLVKK T0375 200 :QSAEEALRGLYGRV 2ax3A 382 :KYNYELAEEFAKEN T0375 217 :AVLVCAWAEEGA 2ax3A 396 :DCVLVLKSATTI T0375 230 :ALGPDG 2ax3A 408 :VTDGEK T0375 237 :LLHSDAFP 2ax3A 414 :TLFNITGN T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2ax3A 422 :TGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDERG Number of specific fragments extracted= 18 number of extra gaps= 2 total=1015 Number of alignments=81 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 4 :ILCVGLVVLDVISL 2ax3A 185 :RDLTGKLKVANIGH T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 2ax3A 199 :PVHLINSINRYVITREMVRSLLPERPRDSHKGTYGKVLIIAGSRLY T0375 68 :DFVLDDLRRYSVDLRYTVFQTTG 2ax3A 247 :APVLSGMGSLKVGTGLVKLAVPF T0375 92 :VPIATVIINEASGSRTILYYDR 2ax3A 270 :PQNLIATSRFPELISVPIDTEK T0375 116 :PDVSATDFEKV 2ax3A 292 :GFFSLQNLQEC T0375 127 :DLTQFKWIHI 2ax3A 305 :LSKDVDVVAI T0375 137 :EGRNASEQVKMLQRIDAHNTRQPP 2ax3A 318 :LGNNEHVREFVNEFLKTLEKPAVI T0375 163 :KIRVS 2ax3A 344 :DAINV T0375 172 :KPREELFQLFG 2ax3A 349 :LDTSVLKERKS T0375 184 :GDVVF 2ax3A 360 :PAVLT T0375 191 :KDVAKHLGF 2ax3A 368 :GEMARLVKK T0375 200 :QSAEEALRGLYGRV 2ax3A 382 :KYNYELAEEFAKEN T0375 217 :AVLVCAWAEEGA 2ax3A 396 :DCVLVLKSATTI T0375 230 :ALGPDG 2ax3A 408 :VTDGEK T0375 237 :LLHSDAFP 2ax3A 414 :TLFNITGN T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2ax3A 422 :TGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQ Number of specific fragments extracted= 16 number of extra gaps= 2 total=1031 Number of alignments=82 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 5 :LCVGLVVLDVISL 2ax3A 186 :DLTGKLKVANIGH T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 2ax3A 199 :PVHLINSINRYVITREMVRSLLPERPRDSHKGTYGKVLIIAGSRLY T0375 68 :DFVLDDLRRYSVDLRYTVFQTTG 2ax3A 247 :APVLSGMGSLKVGTGLVKLAVPF T0375 92 :VPIATVIINEASGSRTILYYDR 2ax3A 270 :PQNLIATSRFPELISVPIDTEK T0375 116 :PDVSATDFEKV 2ax3A 292 :GFFSLQNLQEC T0375 127 :DLTQFKWIHI 2ax3A 305 :LSKDVDVVAI T0375 138 :GR 2ax3A 315 :GP T0375 140 :NASEQVKMLQRIDAHNTRQPP 2ax3A 321 :NEHVREFVNEFLKTLEKPAVI T0375 163 :KIRVS 2ax3A 344 :DAINV T0375 172 :KPREELFQLFG 2ax3A 349 :LDTSVLKERKS T0375 184 :GDVVF 2ax3A 360 :PAVLT T0375 191 :KD 2ax3A 367 :PG T0375 193 :VAKHLGF 2ax3A 370 :MARLVKK T0375 200 :QSAEEALRGLYGRV 2ax3A 382 :KYNYELAEEFAKEN T0375 217 :AVLVCAWAEEGA 2ax3A 396 :DCVLVLKSATTI T0375 230 :ALGPDG 2ax3A 408 :VTDGEK T0375 237 :LLHSDAFP 2ax3A 414 :TLFNITGN T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 2ax3A 422 :TGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQD Number of specific fragments extracted= 18 number of extra gaps= 2 total=1049 Number of alignments=83 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)D152 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)A153 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 T0375 1 :GSQILCVGLVVLDVISLVDKYPK 2ax3A 14 :VDSRILMERAGISVVLAMEEELG T0375 24 :EDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVI 2ax3A 39 :SDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVVEQFEPSILNEFDVVV T0375 99 :INEASGSRTILYYDRSLPDVSATDFEKVD 2ax3A 263 :VKLAVPFPQNLIATSRFPELISVPIDTEK T0375 128 :LTQFKWIHIEGRNASEQVKMLQRI 2ax3A 318 :LGNNEHVREFVNEFLKTLEKPAVI T0375 154 :HNTRQPPEQKIRV 2ax3A 344 :DAINVLDTSVLKE T0375 172 :KPRE 2ax3A 357 :RKSP T0375 176 :ELFQLFGYGD 2ax3A 369 :EMARLVKKTV T0375 192 :DVAKHLGFQSAEEALRGLYGRVRKGAV 2ax3A 379 :GDVKYNYELAEEFAKENDCVLVLKSAT T0375 229 :DALGPDGKLLHSDAFPPPR 2ax3A 406 :TIVTDGEKTLFNITGNTGL T0375 250 :DTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2ax3A 425 :SKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDERG Number of specific fragments extracted= 10 number of extra gaps= 1 total=1059 Number of alignments=84 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)D152 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)A153 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)P173 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 1 :GSQILCVGLVVLDVISLVDKYPK 2ax3A 14 :VDSRILMERAGISVVLAMEEELG T0375 24 :EDSEIRCLSQRWQRGGNASNS 2ax3A 39 :SDYRFLVLCGGGNNGGDGFVV T0375 45 :CTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 2ax3A 167 :DLTVTFGVPKIGHILFPGRDLTGKLKVANIGHPVHLINSINRYVITREMVRSLLP T0375 100 :NEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNA 2ax3A 264 :KLAVPFPQNLIATSRFPELISVPIDTEKGFFSLQNLQECLEL T0375 142 :SEQVKMLQRI 2ax3A 332 :LKTLEKPAVI T0375 154 :HNTRQPPEQKIRV 2ax3A 344 :DAINVLDTSVLKE T0375 174 :REELFQLFGYGD 2ax3A 367 :PGEMARLVKKTV T0375 192 :DVAKHLGFQSAEEALRGLYGRVRKGAV 2ax3A 379 :GDVKYNYELAEEFAKENDCVLVLKSAT T0375 229 :DA 2ax3A 406 :TI T0375 231 :LGPDG 2ax3A 409 :TDGEK T0375 237 :LLHSDA 2ax3A 414 :TLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDERG Number of specific fragments extracted= 12 number of extra gaps= 2 total=1071 Number of alignments=85 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set T0375 250 :DTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGK 2ax3A 425 :SKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=1072 Number of alignments=86 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGK 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=1073 Number of alignments=87 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set T0375 253 :GAGDTFNASVIFSLSQGRSVQEA 2ax3A 428 :GSGDVLTGMIAGFIAQGLSPLEA Number of specific fragments extracted= 1 number of extra gaps= 0 total=1074 Number of alignments=88 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1074 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2ax3A)H-1 Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEI 2ax3A 0 :HMKEIDELTIKEYGVDSRILMERAGI T0375 29 :RCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2ax3A 221 :PERPRDSHKGTYGKVLIIAGSRLYSGAPVLSGMG T0375 76 :RYSVDLRYTVF 2ax3A 255 :SLKVGTGLVKL T0375 89 :TGSVPIATVIINE 2ax3A 266 :AVPFPQNLIATSR T0375 103 :SGSRTILYYDRSLPDVSATDFE 2ax3A 279 :FPELISVPIDTEKGFFSLQNLQ T0375 125 :KVDLTQFKWIHIEGRNASEQ 2ax3A 303 :LELSKDVDVVAIGPGLGNNE T0375 145 :VKML 2ax3A 325 :REFV T0375 149 :QRIDAHNTRQPP 2ax3A 330 :EFLKTLEKPAVI T0375 163 :K 2ax3A 344 :D T0375 166 :VSVEVE 2ax3A 345 :AINVLD T0375 175 :EELFQLFGYGDVVF 2ax3A 351 :TSVLKERKSPAVLT T0375 191 :KDVAKHL 2ax3A 367 :PGEMARL T0375 198 :GF 2ax3A 375 :KK T0375 200 :QSAEEALRGLYGRV 2ax3A 389 :EEFAKENDCVLVLK T0375 216 :GAVLVCAWAEEGADALGPDGK 2ax3A 403 :SATTIVTDGEKTLFNITGNTG T0375 249 :VDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 2ax3A 424 :LSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDER Number of specific fragments extracted= 16 number of extra gaps= 2 total=1090 Number of alignments=89 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)D19 because first residue in template chain is (2ax3A)H-1 Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 20 :KYPKEDSEI 2ax3A 0 :HMKEIDELT T0375 31 :LSQRWQRGGNASNSCT 2ax3A 225 :RDSHKGTYGKVLIIAG T0375 49 :SLL 2ax3A 241 :SRL T0375 65 :HVADFVLDDLRRYSVDLRYTVF 2ax3A 244 :YSGAPVLSGMGSLKVGTGLVKL T0375 89 :TGSVPIATVIINE 2ax3A 266 :AVPFPQNLIATSR T0375 103 :SGSRTILYYDRSLPDVSATDFE 2ax3A 279 :FPELISVPIDTEKGFFSLQNLQ T0375 125 :KVDLTQFKWIHIEGRNASEQ 2ax3A 303 :LELSKDVDVVAIGPGLGNNE T0375 145 :VKML 2ax3A 325 :REFV T0375 149 :QRIDAHNTRQPP 2ax3A 330 :EFLKTLEKPAVI T0375 163 :K 2ax3A 344 :D T0375 166 :VSVEVE 2ax3A 345 :AINVLD T0375 175 :EELFQLFGYGDVVF 2ax3A 351 :TSVLKERKSPAVLT T0375 191 :KDVAKHL 2ax3A 367 :PGEMARL T0375 198 :GF 2ax3A 375 :KK T0375 200 :QSAEEALRGLYG 2ax3A 389 :EEFAKENDCVLV T0375 214 :RKGAVLVCAWAEEGADALG 2ax3A 401 :LKSATTIVTDGEKTLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAEL T0375 290 :QGF 2ax3A 470 :RGL Number of specific fragments extracted= 18 number of extra gaps= 2 total=1108 Number of alignments=90 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)E27 because first residue in template chain is (2ax3A)H-1 Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 28 :I 2ax3A 0 :H T0375 36 :QRGGNASNSCTILSLLGAPCAFMGSM 2ax3A 243 :LYSGAPVLSGMGSLKVGTGLVKLAVP T0375 62 :APGHVAD 2ax3A 270 :PQNLIAT T0375 76 :RY 2ax3A 277 :SR T0375 103 :SGSRTILYYDRSLPDVSATDFE 2ax3A 279 :FPELISVPIDTEKGFFSLQNLQ T0375 125 :KVDLTQFKWIHIEG 2ax3A 303 :LELSKDVDVVAIGP T0375 139 :RNASEQVKML 2ax3A 319 :GNNEHVREFV T0375 149 :QRIDAHNTRQPP 2ax3A 330 :EFLKTLEKPAVI T0375 171 :E 2ax3A 350 :D T0375 174 :REELFQ 2ax3A 351 :TSVLKE T0375 181 :FGYGDVVF 2ax3A 357 :RKSPAVLT T0375 191 :KDVAKHL 2ax3A 367 :PGEMARL T0375 198 :GF 2ax3A 375 :KK T0375 200 :QSAEEALRGLYGRV 2ax3A 383 :YNYELAEEFAKEND T0375 217 :AVLVCA 2ax3A 397 :CVLVLK T0375 225 :EEGADALG 2ax3A 403 :SATTIVTD T0375 234 :DGK 2ax3A 411 :GEK T0375 238 :LHSDAF 2ax3A 414 :TLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDER Number of specific fragments extracted= 19 number of extra gaps= 2 total=1127 Number of alignments=91 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)S26 because first residue in template chain is (2ax3A)H-1 T0375 27 :EI 2ax3A 0 :HM T0375 37 :RGGNASNSCTILSLL 2ax3A 48 :GGGNNGGDGFVVARN T0375 52 :GAPCAFMGSMAPG 2ax3A 66 :VVKDVLVVFLGKK T0375 65 :HVADFVLDDLRRYSVDL 2ax3A 81 :PDCEYNYGLYKKFGGKV T0375 87 :QTT 2ax3A 98 :VEQ T0375 123 :FEKVDLTQFKWIHIEGRN 2ax3A 101 :FEPSILNEFDVVVDAIFG T0375 141 :ASEQVKMLQRIDAHNTRQ 2ax3A 126 :TGEYAEIINLVNKSGKVV T0375 159 :PPEQ 2ax3A 145 :SVDV T0375 163 :KIRVSVE 2ax3A 155 :NTGKVLR T0375 171 :E 2ax3A 199 :P T0375 175 :E 2ax3A 200 :V T0375 179 :QLFGYGDVVFVSKDVAKHL 2ax3A 201 :HLINSINRYVITREMVRSL T0375 198 :GF 2ax3A 222 :ER T0375 200 :QS 2ax3A 226 :DS T0375 212 :RVRKGAVLVCAWAE 2ax3A 229 :KGTYGKVLIIAGSR T0375 234 :DGKLLHSDA 2ax3A 411 :GEKTLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDER Number of specific fragments extracted= 17 number of extra gaps= 0 total=1144 Number of alignments=92 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set T0375 183 :YGDVVFVSKDVAKHL 2ax3A 24 :GISVVLAMEEELGNL T0375 198 :GF 2ax3A 40 :DY T0375 200 :QSAEEALRGLYGRV 2ax3A 54 :GDGFVVARNLLGVV T0375 216 :GAVLVCAWAEEGADALGP 2ax3A 68 :KDVLVVFLGKKKTPDCEY T0375 234 :DGKLLHSDAF 2ax3A 410 :DGEKTLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEA 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEA Number of specific fragments extracted= 6 number of extra gaps= 0 total=1150 Number of alignments=93 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 30 :CLSQRWQRGGNASNSCT 2ax3A 224 :PRDSHKGTYGKVLIIAG T0375 49 :SLL 2ax3A 241 :SRL T0375 65 :HVADFVLDDLRRYSVDLRYTVF 2ax3A 244 :YSGAPVLSGMGSLKVGTGLVKL T0375 89 :TGSVPIATVIINE 2ax3A 266 :AVPFPQNLIATSR T0375 103 :SGSRTILYYDRSLPDVSATDFE 2ax3A 279 :FPELISVPIDTEKGFFSLQNLQ T0375 125 :KVDLTQFKWIHIEGRNASEQ 2ax3A 303 :LELSKDVDVVAIGPGLGNNE T0375 145 :VKML 2ax3A 325 :REFV T0375 149 :QRIDAHNTRQPP 2ax3A 330 :EFLKTLEKPAVI T0375 163 :K 2ax3A 344 :D T0375 166 :VSVEVE 2ax3A 345 :AINVLD T0375 175 :EELFQLFGYGDVVF 2ax3A 351 :TSVLKERKSPAVLT T0375 191 :KDVAKHL 2ax3A 367 :PGEMARL T0375 198 :GF 2ax3A 375 :KK T0375 200 :QSAEEALRGLYG 2ax3A 389 :EEFAKENDCVLV T0375 214 :RKGAVLVCAWAEEGADALG 2ax3A 401 :LKSATTIVTDGEKTLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQ 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVY Number of specific fragments extracted= 16 number of extra gaps= 2 total=1166 Number of alignments=94 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set T0375 3 :QILCVGL 2ax3A 234 :KVLIIAG T0375 34 :RWQRGGNASNSCTILSLLGAP 2ax3A 241 :SRLYSGAPVLSGMGSLKVGTG T0375 234 :DGKLLHSDAF 2ax3A 410 :DGEKTLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDG 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDE Number of specific fragments extracted= 4 number of extra gaps= 0 total=1170 Number of alignments=95 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set T0375 1 :GSQILCVG 2ax3A 40 :DYRFLVLC T0375 38 :GGNASNSCTILSLL 2ax3A 49 :GGNNGGDGFVVARN T0375 52 :GAPCAFMGSMAPG 2ax3A 66 :VVKDVLVVFLGKK T0375 65 :HVADFVLDDLRRYSVDL 2ax3A 81 :PDCEYNYGLYKKFGGKV T0375 87 :QTT 2ax3A 98 :VEQ T0375 123 :FEKVDLTQFKWIHIEGRN 2ax3A 101 :FEPSILNEFDVVVDAIFG T0375 141 :ASEQVKMLQRIDAHNTRQ 2ax3A 126 :TGEYAEIINLVNKSGKVV T0375 159 :PPEQ 2ax3A 145 :SVDV T0375 163 :KIRVSVE 2ax3A 155 :NTGKVLR T0375 171 :E 2ax3A 199 :P T0375 175 :E 2ax3A 200 :V T0375 179 :QLFGYGDVVFVSKDVAKHL 2ax3A 201 :HLINSINRYVITREMVRSL T0375 198 :GF 2ax3A 222 :ER T0375 200 :QS 2ax3A 226 :DS T0375 212 :RVRKGAVLVCAWAE 2ax3A 229 :KGTYGKVLIIAGSR T0375 234 :DGKLLHSDA 2ax3A 411 :GEKTLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQD Number of specific fragments extracted= 17 number of extra gaps= 0 total=1187 Number of alignments=96 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)L9 because first residue in template chain is (2ax3A)H-1 Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 10 :VVLDVISLVDKYPKEDSEIRCLSQRWQR 2ax3A 0 :HMKEIDELTIKEYGVDSRILMERAGISV T0375 38 :GGNAS 2ax3A 239 :AGSRL T0375 65 :HVADFVLDDLRRYSVDLRYTVF 2ax3A 244 :YSGAPVLSGMGSLKVGTGLVKL T0375 89 :TGSVPIATVII 2ax3A 266 :AVPFPQNLIAT T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 2ax3A 277 :SRFPELISVPIDTEKGFFSLQNLQEC T0375 127 :DLTQFKWIHIEGRNAS 2ax3A 305 :LSKDVDVVAIGPGLGN T0375 143 :EQVKMLQRIDAHNTRQPP 2ax3A 324 :VREFVNEFLKTLEKPAVI T0375 163 :KIRVSVEVEKPREELFQL 2ax3A 344 :DAINVLDTSVLKERKSPA T0375 186 :VVF 2ax3A 362 :VLT T0375 191 :KDVAKHL 2ax3A 367 :PGEMARL T0375 198 :GFQ 2ax3A 375 :KKT T0375 201 :SAEEALRGLYGRVRKGA 2ax3A 380 :DVKYNYELAEEFAKEND T0375 218 :VLVCA 2ax3A 398 :VLVLK T0375 227 :GADALGPDGKLLHSDAF 2ax3A 403 :SATTIVTDGEKTLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAEL T0375 290 :QGFDGIV 2ax3A 470 :RGLTASE Number of specific fragments extracted= 16 number of extra gaps= 2 total=1203 Number of alignments=97 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)L9 because first residue in template chain is (2ax3A)H-1 Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 10 :VVLDVI 2ax3A 0 :HMKEID T0375 38 :GG 2ax3A 239 :AG T0375 49 :SLL 2ax3A 241 :SRL T0375 65 :HVADFVLDDLRRYSVDLRYTVFQ 2ax3A 244 :YSGAPVLSGMGSLKVGTGLVKLA T0375 90 :GSVPIATVII 2ax3A 267 :VPFPQNLIAT T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 2ax3A 277 :SRFPELISVPIDTEKGFFSLQNLQEC T0375 127 :DLTQFKWIHIE 2ax3A 305 :LSKDVDVVAIG T0375 138 :GRNA 2ax3A 317 :GLGN T0375 143 :EQVKMLQRIDAHNTRQPP 2ax3A 324 :VREFVNEFLKTLEKPAVI T0375 163 :KIRVSVEVEKPRE 2ax3A 344 :DAINVLDTSVLKE T0375 181 :FGYGDVVF 2ax3A 357 :RKSPAVLT T0375 191 :KDVAKHL 2ax3A 367 :PGEMARL T0375 198 :GFQ 2ax3A 375 :KKT T0375 201 :SAEEALRGLYGRVRKGA 2ax3A 380 :DVKYNYELAEEFAKEND T0375 218 :VLVCA 2ax3A 398 :VLVLK T0375 227 :GADALGPDGKLLHSDAF 2ax3A 403 :SATTIVTDGEKTLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAEL T0375 290 :QGFDGIV 2ax3A 470 :RGLTASE Number of specific fragments extracted= 18 number of extra gaps= 2 total=1221 Number of alignments=98 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 38 :GGNASNSCTILSLLGAPCAFMGSM 2ax3A 245 :SGAPVLSGMGSLKVGTGLVKLAVP T0375 62 :APGHVA 2ax3A 270 :PQNLIA T0375 71 :LDDLR 2ax3A 276 :TSRFP T0375 77 :Y 2ax3A 281 :E T0375 81 :LRYTVFQTTG 2ax3A 282 :LISVPIDTEK T0375 116 :PDVSATDFEKVD 2ax3A 292 :GFFSLQNLQECL T0375 128 :LTQFKWIHIE 2ax3A 306 :SKDVDVVAIG T0375 138 :GRNA 2ax3A 317 :GLGN T0375 142 :SEQVKMLQRIDAH 2ax3A 322 :EHVREFVNEFLKT T0375 155 :NTRQPP 2ax3A 336 :EKPAVI T0375 163 :KIRVSV 2ax3A 344 :DAINVL T0375 173 :PREELFQ 2ax3A 350 :DTSVLKE T0375 181 :FGYGDVVF 2ax3A 357 :RKSPAVLT T0375 191 :KDVAKHL 2ax3A 367 :PGEMARL T0375 198 :GFQ 2ax3A 375 :KKT T0375 201 :SAEEALRGLYGR 2ax3A 384 :NYELAEEFAKEN T0375 216 :GAVLVCAW 2ax3A 396 :DCVLVLKS T0375 226 :EGADALGPD 2ax3A 404 :ATTIVTDGE T0375 237 :LLHSDAF 2ax3A 413 :KTLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDER T0375 296 :V 2ax3A 472 :L Number of specific fragments extracted= 21 number of extra gaps= 2 total=1242 Number of alignments=99 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 38 :GGNASNSCTILSLLGAP 2ax3A 245 :SGAPVLSGMGSLKVGTG T0375 55 :CAFMGSMAPGHVA 2ax3A 263 :VKLAVPFPQNLIA T0375 75 :RRY 2ax3A 276 :TSR T0375 78 :S 2ax3A 281 :E T0375 81 :LRYTVFQTTG 2ax3A 282 :LISVPIDTEK T0375 116 :PDVSATDFEKVD 2ax3A 292 :GFFSLQNLQECL T0375 128 :LTQFKWIHIEGRNA 2ax3A 306 :SKDVDVVAIGPGLG T0375 142 :SEQVKMLQRIDAH 2ax3A 322 :EHVREFVNEFLKT T0375 155 :NTRQPP 2ax3A 336 :EKPAVI T0375 163 :KIRVSV 2ax3A 344 :DAINVL T0375 173 :PREELFQLFGYG 2ax3A 350 :DTSVLKERKSPA T0375 186 :VVF 2ax3A 362 :VLT T0375 191 :KDVAKHL 2ax3A 367 :PGEMARL T0375 198 :GFQ 2ax3A 375 :KKT T0375 201 :SAEEALRGLYGR 2ax3A 384 :NYELAEEFAKEN T0375 216 :GAVLVCA 2ax3A 396 :DCVLVLK T0375 225 :EEGADALGPD 2ax3A 403 :SATTIVTDGE T0375 236 :KLLHSDAF 2ax3A 413 :KTLFNITG T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 2ax3A 421 :NTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAEL T0375 290 :QGFDGI 2ax3A 467 :QDERGL Number of specific fragments extracted= 20 number of extra gaps= 2 total=1262 Number of alignments=100 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 67 :ADFVLDDLRRYSVDLRYTVF 2ax3A 246 :GAPVLSGMGSLKVGTGLVKL T0375 89 :TGSVPIATVII 2ax3A 266 :AVPFPQNLIAT T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 2ax3A 277 :SRFPELISVPIDTEKGFFSLQNLQEC T0375 127 :DLTQFKWIHIEGRNAS 2ax3A 305 :LSKDVDVVAIGPGLGN T0375 143 :EQVKMLQRIDAHNTRQPP 2ax3A 324 :VREFVNEFLKTLEKPAVI T0375 163 :KIRVSVEVEKPREELFQL 2ax3A 344 :DAINVLDTSVLKERKSPA T0375 186 :VVF 2ax3A 362 :VLT T0375 191 :KDVAKHL 2ax3A 367 :PGEMARL T0375 198 :GFQ 2ax3A 375 :KKT T0375 201 :SAEEALRGLYGRVRKGA 2ax3A 380 :DVKYNYELAEEFAKEND T0375 218 :VLVCA 2ax3A 398 :VLVLK T0375 227 :GADALGPDGKLLHSDAF 2ax3A 403 :SATTIVTDGEKTLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQ 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELF Number of specific fragments extracted= 13 number of extra gaps= 2 total=1275 Number of alignments=101 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 38 :GG 2ax3A 239 :AG T0375 49 :SLL 2ax3A 241 :SRL T0375 65 :HVADFVLDDLRRYSVDLRYTVFQ 2ax3A 244 :YSGAPVLSGMGSLKVGTGLVKLA T0375 90 :GSVPIATVII 2ax3A 267 :VPFPQNLIAT T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 2ax3A 277 :SRFPELISVPIDTEKGFFSLQNLQEC T0375 127 :DLTQFKWIHIE 2ax3A 305 :LSKDVDVVAIG T0375 138 :GRNA 2ax3A 317 :GLGN T0375 143 :EQVKMLQRIDAHNTRQPP 2ax3A 324 :VREFVNEFLKTLEKPAVI T0375 163 :KIRVSVEVEKPRE 2ax3A 344 :DAINVLDTSVLKE T0375 181 :FGYGDVVF 2ax3A 357 :RKSPAVLT T0375 191 :KDVAKHL 2ax3A 367 :PGEMARL T0375 198 :GFQ 2ax3A 375 :KKT T0375 201 :SAEEALRGLYGRVRKGA 2ax3A 380 :DVKYNYELAEEFAKEND T0375 218 :VLVCA 2ax3A 398 :VLVLK T0375 227 :GADALGPDGKLLHSDAF 2ax3A 403 :SATTIVTDGEKTLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAE Number of specific fragments extracted= 16 number of extra gaps= 2 total=1291 Number of alignments=102 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 3 :QILCV 2ax3A 234 :KVLII T0375 38 :GGNASNSCTILSLLGAPCAFMGSM 2ax3A 245 :SGAPVLSGMGSLKVGTGLVKLAVP T0375 62 :APGHVA 2ax3A 270 :PQNLIA T0375 71 :LDDLR 2ax3A 276 :TSRFP T0375 77 :Y 2ax3A 281 :E T0375 81 :LRYTVFQTTG 2ax3A 282 :LISVPIDTEK T0375 116 :PDVSATDFEKVD 2ax3A 292 :GFFSLQNLQECL T0375 128 :LTQFKWIHIE 2ax3A 306 :SKDVDVVAIG T0375 138 :GRNA 2ax3A 317 :GLGN T0375 142 :SEQVKMLQRIDAH 2ax3A 322 :EHVREFVNEFLKT T0375 155 :NTRQPP 2ax3A 336 :EKPAVI T0375 163 :KIRVSV 2ax3A 344 :DAINVL T0375 173 :PREELFQ 2ax3A 350 :DTSVLKE T0375 181 :FGYGDVVF 2ax3A 357 :RKSPAVLT T0375 191 :KDVAKHL 2ax3A 367 :PGEMARL T0375 198 :GFQ 2ax3A 375 :KKT T0375 201 :SAEEALRGLYGR 2ax3A 384 :NYELAEEFAKEN T0375 216 :GAVLVCAW 2ax3A 396 :DCVLVLKS T0375 226 :EGADALGPD 2ax3A 404 :ATTIVTDGE T0375 237 :LLHSDAF 2ax3A 413 :KTLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDG 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDE Number of specific fragments extracted= 21 number of extra gaps= 2 total=1312 Number of alignments=103 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)E161 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 2 :SQILCVGLV 2ax3A 233 :GKVLIIAGS T0375 35 :WQRGGNASNSCTILSLLGAP 2ax3A 242 :RLYSGAPVLSGMGSLKVGTG T0375 55 :CAFMGSMAPGHVA 2ax3A 263 :VKLAVPFPQNLIA T0375 75 :RRY 2ax3A 276 :TSR T0375 78 :S 2ax3A 281 :E T0375 81 :LRYTVFQTTG 2ax3A 282 :LISVPIDTEK T0375 116 :PDVSATDFEKVD 2ax3A 292 :GFFSLQNLQECL T0375 128 :LTQFKWIHIEGRNA 2ax3A 306 :SKDVDVVAIGPGLG T0375 142 :SEQVKMLQRIDAH 2ax3A 322 :EHVREFVNEFLKT T0375 155 :NTRQPP 2ax3A 336 :EKPAVI T0375 163 :KIRVSV 2ax3A 344 :DAINVL T0375 173 :PREELFQLFGYG 2ax3A 350 :DTSVLKERKSPA T0375 186 :VVF 2ax3A 362 :VLT T0375 191 :KDVAKHL 2ax3A 367 :PGEMARL T0375 198 :GFQ 2ax3A 375 :KKT T0375 201 :SAEEALRGLYGR 2ax3A 384 :NYELAEEFAKEN T0375 216 :GAVLVCA 2ax3A 396 :DCVLVLK T0375 225 :EEGADALGPD 2ax3A 403 :SATTIVTDGE T0375 236 :KLLHSDAF 2ax3A 413 :KTLFNITG T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDG 2ax3A 421 :NTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDE Number of specific fragments extracted= 20 number of extra gaps= 2 total=1332 Number of alignments=104 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)S32 because first residue in template chain is (2ax3A)H-1 Warning: unaligning (T0375)K163 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)K172 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)P173 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 33 :QRWQ 2ax3A 0 :HMKE T0375 37 :RGGNASNS 2ax3A 238 :IAGSRLYS T0375 67 :ADFVLDDLRRYSVDLRYTVF 2ax3A 246 :GAPVLSGMGSLKVGTGLVKL T0375 89 :TGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 2ax3A 266 :AVPFPQNLIATSRFPELISVPIDTEKGFFSLQNLQECLELSKDVDVVAIGPGLGN T0375 144 :QVKMLQRIDAHNTRQPPEQ 2ax3A 323 :HVREFVNEFLKTLEKPAVI T0375 165 :RVSVEVE 2ax3A 344 :DAINVLD T0375 174 :REELFQLF 2ax3A 367 :PGEMARLV T0375 182 :GYGDVVFVSKDVAKHLGFQSAEE 2ax3A 376 :KTVGDVKYNYELAEEFAKENDCV T0375 212 :RVRKGAVLVCAWAEEGADALGPDGKL 2ax3A 399 :LVLKSATTIVTDGEKTLFNITGNTGL T0375 250 :DTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2ax3A 425 :SKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDERG Number of specific fragments extracted= 10 number of extra gaps= 2 total=1342 Number of alignments=105 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)K20 because first residue in template chain is (2ax3A)H-1 Warning: unaligning (T0375)E169 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 T0375 21 :Y 2ax3A 0 :H T0375 38 :GG 2ax3A 239 :AG T0375 49 :SLL 2ax3A 241 :SRL T0375 65 :HVADFVLDDLRRYSVDLRYTVFQTT 2ax3A 244 :YSGAPVLSGMGSLKVGTGLVKLAVP T0375 92 :VPIATVIINEASGSRTILYYDR 2ax3A 269 :FPQNLIATSRFPELISVPIDTE T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNAS 2ax3A 292 :GFFSLQNLQECLELSKDVDVVAIGPGLGN T0375 150 :RIDAHNTRQPPEQKIRVSV 2ax3A 323 :HVREFVNEFLKTLEKPAVI T0375 171 :EKP 2ax3A 344 :DAI T0375 174 :REELFQLF 2ax3A 367 :PGEMARLV T0375 182 :GYGDVVFVSKDVAKHLGFQSA 2ax3A 376 :KTVGDVKYNYELAEEFAKEND T0375 210 :YGRVRKGAVLVCAWAEEGADALGPDGKL 2ax3A 397 :CVLVLKSATTIVTDGEKTLFNITGNTGL T0375 250 :DTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDG 2ax3A 425 :SKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDE Number of specific fragments extracted= 12 number of extra gaps= 1 total=1354 Number of alignments=106 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)K163 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 37 :RGGNASNSCTILSLLGAPCAFMGSMAPGH 2ax3A 244 :YSGAPVLSGMGSLKVGTGLVKLAVPFPQN T0375 68 :DFVLDDL 2ax3A 273 :LIATSRF T0375 79 :VDLRYTVFQTTGS 2ax3A 280 :PELISVPIDTEKG T0375 115 :LPDVSATDFEKVDLTQFKWIHIEGRNASE 2ax3A 293 :FFSLQNLQECLELSKDVDVVAIGPGLGNN T0375 144 :QVKMLQRIDAHNTRQPPEQ 2ax3A 323 :HVREFVNEFLKTLEKPAVI T0375 165 :RVSVEVE 2ax3A 344 :DAINVLD T0375 174 :REELF 2ax3A 351 :TSVLK T0375 180 :LFGYGDVVF 2ax3A 356 :ERKSPAVLT T0375 191 :KDVAKHLGFQ 2ax3A 367 :PGEMARLVKK T0375 205 :ALRGLYGRVRKG 2ax3A 386 :ELAEEFAKENDC T0375 218 :VLVCA 2ax3A 398 :VLVLK T0375 225 :EEGADALGPDG 2ax3A 403 :SATTIVTDGEK T0375 237 :L 2ax3A 414 :T T0375 240 :SDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2ax3A 415 :LFNITGNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDERG Number of specific fragments extracted= 14 number of extra gaps= 2 total=1368 Number of alignments=107 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set T0375 37 :RGGNASNSCTILSLL 2ax3A 49 :GGNNGGDGFVVARNL T0375 52 :GAPCAFMGSMAP 2ax3A 66 :VVKDVLVVFLGK T0375 64 :GHVADFVLDDLRRYSVDLR 2ax3A 80 :TPDCEYNYGLYKKFGGKVV T0375 121 :TDFEKVDLTQFKWIHIEGRNASE 2ax3A 99 :EQFEPSILNEFDVVVDAIFGTGL T0375 144 :QVKMLQRIDAHNTRQPPEQ 2ax3A 127 :GEYAEIINLVNKSGKVVVS T0375 164 :IRVSVEVE 2ax3A 146 :VDVPSGID T0375 172 :KPREELFQ 2ax3A 183 :PGRDLTGK T0375 180 :LFGYGDVVFVSKDVAKHLGFQ 2ax3A 202 :LINSINRYVITREMVRSLLPE T0375 203 :E 2ax3A 299 :L T0375 207 :RGLYGRVRKGAVLVCAWA 2ax3A 300 :QECLELSKDVDVVAIGPG T0375 236 :KLLHSDA 2ax3A 413 :KTLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDG 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDE Number of specific fragments extracted= 12 number of extra gaps= 0 total=1380 Number of alignments=108 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)I164 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)R165 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 153 :AHNTRQPPEQK 2ax3A 354 :LKERKSPAVLT T0375 166 :VS 2ax3A 367 :PG T0375 175 :EELFQLFGYGDVVFVSKDVAKHLGFQSAEE 2ax3A 369 :EMARLVKKTVGDVKYNYELAEEFAKENDCV T0375 212 :RVRKGAVLVCAWAEEGADALGPDGKL 2ax3A 399 :LVLKSATTIVTDGEKTLFNITGNTGL T0375 250 :DTLGAGDTFNASVIFSLSQGRSVQEA 2ax3A 425 :SKGGSGDVLTGMIAGFIAQGLSPLEA Number of specific fragments extracted= 5 number of extra gaps= 1 total=1385 Number of alignments=109 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)E169 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 T0375 104 :GSRTILYYDR 2ax3A 281 :ELISVPIDTE T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNAS 2ax3A 292 :GFFSLQNLQECLELSKDVDVVAIGPGLGN T0375 150 :RIDAHNTRQPPEQKIRVSV 2ax3A 323 :HVREFVNEFLKTLEKPAVI T0375 171 :EKP 2ax3A 344 :DAI T0375 174 :REELFQLF 2ax3A 367 :PGEMARLV T0375 182 :GYGDVVFVSKDVAKHLGFQSAE 2ax3A 376 :KTVGDVKYNYELAEEFAKENDC T0375 211 :GRVRKGAVLVCAWAEEGADALGPDGKL 2ax3A 398 :VLVLKSATTIVTDGEKTLFNITGNTGL T0375 250 :DTLGAGDTFNASVIFSLSQGRSVQEALR 2ax3A 425 :SKGGSGDVLTGMIAGFIAQGLSPLEAST Number of specific fragments extracted= 8 number of extra gaps= 1 total=1393 Number of alignments=110 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)K163 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 2 :SQILCVGL 2ax3A 233 :GKVLIIAG T0375 34 :RWQRGGNASNSCTILSLLGAPCAFMGSMAPGH 2ax3A 241 :SRLYSGAPVLSGMGSLKVGTGLVKLAVPFPQN T0375 68 :DFVLDDL 2ax3A 273 :LIATSRF T0375 79 :VDLRYTVFQTTGS 2ax3A 280 :PELISVPIDTEKG T0375 115 :LPDVSATDFEKVDLTQFKWIHIEGRNASE 2ax3A 293 :FFSLQNLQECLELSKDVDVVAIGPGLGNN T0375 144 :QVKMLQRIDAHNTRQPPEQ 2ax3A 323 :HVREFVNEFLKTLEKPAVI T0375 165 :RVSVEVE 2ax3A 344 :DAINVLD T0375 174 :REELF 2ax3A 351 :TSVLK T0375 180 :LFGYGDVVF 2ax3A 356 :ERKSPAVLT T0375 191 :KDVAKHLGFQ 2ax3A 367 :PGEMARLVKK T0375 205 :ALRGLYGRVRKG 2ax3A 386 :ELAEEFAKENDC T0375 218 :VLVCA 2ax3A 398 :VLVLK T0375 225 :EEGADALGPDG 2ax3A 403 :SATTIVTDGEK T0375 237 :L 2ax3A 414 :T T0375 240 :SDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 2ax3A 415 :LFNITGNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQD Number of specific fragments extracted= 15 number of extra gaps= 2 total=1408 Number of alignments=111 # 2ax3A read from 2ax3A/merged-a2m # found chain 2ax3A in template set Warning: unaligning (T0375)K163 because of BadResidue code BAD_PEPTIDE in next template residue (2ax3A)A343 Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE at template residue (2ax3A)A343 Warning: unaligning (T0375)V189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ax3A)H366 Warning: unaligning (T0375)S190 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ax3A)H366 T0375 2 :SQILCVG 2ax3A 233 :GKVLIIA T0375 33 :QRWQRGGNASNSCTILSLLGA 2ax3A 240 :GSRLYSGAPVLSGMGSLKVGT T0375 54 :PCAFMGSMAPGH 2ax3A 262 :LVKLAVPFPQNL T0375 73 :DLRRY 2ax3A 274 :IATSR T0375 78 :SVDLRYTVFQTTGS 2ax3A 281 :ELISVPIDTEKGFF T0375 111 :Y 2ax3A 295 :S T0375 116 :PDVSATD 2ax3A 296 :LQNLQEC T0375 125 :KVDLTQFKWIHIEGRNASE 2ax3A 303 :LELSKDVDVVAIGPGLGNN T0375 144 :QVKMLQRIDAHNTRQPPEQ 2ax3A 323 :HVREFVNEFLKTLEKPAVI T0375 165 :RVSVEVE 2ax3A 344 :DAINVLD T0375 174 :REELFQ 2ax3A 351 :TSVLKE T0375 181 :FGYGDVVF 2ax3A 357 :RKSPAVLT T0375 191 :KDVAKHLGFQSAEE 2ax3A 367 :PGEMARLVKKTVGD T0375 205 :ALRGLYGRVRKG 2ax3A 386 :ELAEEFAKENDC T0375 220 :VCAWAEEGADALGPDG 2ax3A 398 :VLVLKSATTIVTDGEK T0375 238 :LHSDAF 2ax3A 414 :TLFNIT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 2ax3A 420 :GNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAEL Number of specific fragments extracted= 17 number of extra gaps= 2 total=1425 Number of alignments=112 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c3qA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1c3qA expands to /projects/compbio/data/pdb/1c3q.pdb.gz 1c3qA:# T0375 read from 1c3qA/merged-a2m # 1c3qA read from 1c3qA/merged-a2m # adding 1c3qA to template set # found chain 1c3qA in template set T0375 1 :GSQILCVGLVV 1c3qA 17 :SPLVHSITNNV T0375 66 :VADFVLDDLRRYSVDLRYT 1c3qA 28 :VTNFTANGLLALGASPVMA T0375 141 :ASEQ 1c3qA 48 :AKEE T0375 145 :VKMLQRIDAHNTRQPPE 1c3qA 109 :RDIIREVRLAAIRGNAA T0375 176 :ELFQLFGYGDVVFVSKDVAK 1c3qA 126 :EIAHTVGVTDWLIKGVDAGE T0375 238 :LHSDAFPPPRVVDT 1c3qA 178 :SHVYTLHNGHKLLT T0375 252 :LGAGDTFNASVIFSLSQGRSVQEALRF 1c3qA 194 :TGAGCLLTSVVGAFCAVEENPLFAAIA T0375 279 :GC 1c3qA 225 :YG Number of specific fragments extracted= 8 number of extra gaps= 0 total=1433 Number of alignments=113 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 13 :DVISLVD 1c3qA 149 :DIIRLAQ T0375 250 :D 1c3qA 190 :L T0375 251 :TLGAGDTFNASVIFSLSQGRSVQEALRFGC 1c3qA 193 :VTGAGCLLTSVVGAFCAVEENPLFAAIAAI Number of specific fragments extracted= 3 number of extra gaps= 0 total=1436 Number of alignments=114 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 1 :GSQILCVGL 1c3qA 1 :MDAQSAAKC T0375 28 :IRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDF 1c3qA 10 :LTAVRRHSPLVHSITNNVVTNFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGVPVILDPVGAGATPFRT T0375 157 :RQPPEQKIRVSVEVEKP 1c3qA 106 :ESARDIIREVRLAAIRG T0375 174 :REELFQLFGYGDVVFVSKDVAK 1c3qA 124 :AAEIAHTVGVTDWLIKGVDAGE T0375 198 :GFQSAEEALRGLYGRVRKGAVL 1c3qA 146 :GGGDIIRLAQQAAQKLNTVIAI T0375 226 :EGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQV 1c3qA 168 :TGEVDVIADTSHVYTLHNGHKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISS T0375 283 :AGKKCGLQGFDGIV 1c3qA 232 :AAQQTADKGPGSFQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=1443 Number of alignments=115 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 1 :GSQILCVGLV 1c3qA 1 :MDAQSAAKCL T0375 26 :SEIRCLSQRWQRGGNASNSCTILSLLGA 1c3qA 11 :TAVRRHSPLVHSITNNVVTNFTANGLLA T0375 57 :FMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRT 1c3qA 39 :LGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGV T0375 113 :RSLPDVSATDFEK 1c3qA 90 :PVILDPVGAGATP T0375 160 :PEQKIRVSVEVEKP 1c3qA 109 :RDIIREVRLAAIRG T0375 174 :REELFQLFGYGDVVFVSKDVAK 1c3qA 124 :AAEIAHTVGVTDWLIKGVDAGE T0375 198 :GFQSAEEALRGLYGRVRKGAVL 1c3qA 146 :GGGDIIRLAQQAAQKLNTVIAI T0375 226 :EGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGK 1c3qA 168 :TGEVDVIADTSHVYTLHNGHKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYGV T0375 286 :KCGLQGF 1c3qA 235 :QTADKGP T0375 293 :D 1c3qA 244 :F T0375 294 :GIV 1c3qA 251 :KLS Number of specific fragments extracted= 11 number of extra gaps= 0 total=1454 Number of alignments=116 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 176 :ELFQLFGYGDVVFVSKDVAK 1c3qA 126 :EIAHTVGVTDWLIKGVDAGE T0375 198 :GFQSAEEALRGLYGRVRKGAVL 1c3qA 146 :GGGDIIRLAQQAAQKLNTVIAI T0375 226 :EGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAG 1c3qA 168 :TGEVDVIADTSHVYTLHNGHKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1457 Number of alignments=117 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 175 :EELFQLFGYGDVVFVSKDVAK 1c3qA 125 :AEIAHTVGVTDWLIKGVDAGE T0375 198 :GFQSAEEALRGLYGRVRKGAVL 1c3qA 146 :GGGDIIRLAQQAAQKLNTVIAI T0375 226 :EGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAG 1c3qA 168 :TGEVDVIADTSHVYTLHNGHKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1460 Number of alignments=118 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 44 :SCTILSLLGAPCA 1c3qA 197 :GCLLTSVVGAFCA Number of specific fragments extracted= 1 number of extra gaps= 0 total=1461 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1461 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 2 :S 1c3qA 1 :M T0375 64 :GHVA 1c3qA 2 :DAQS T0375 76 :RYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKML 1c3qA 6 :AAKCLTAVRRHSPLVHSITNNVVTNFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMI T0375 149 :QRIDAHNTRQPPEQ 1c3qA 82 :KSANEHGVPVILDP T0375 163 :KIRVSVEVEKPREELFQL 1c3qA 98 :AGATPFRTESARDIIREV T0375 183 :YGDVVFVSKDVAKHL 1c3qA 116 :RLAAIRGNAAEIAHT T0375 198 :GF 1c3qA 132 :GV T0375 200 :QSAEEALRGLYGR 1c3qA 148 :GDIIRLAQQAAQK T0375 216 :GAVLVCAWAEEGADALG 1c3qA 161 :LNTVIAITGEVDVIADT T0375 234 :DGKLLHSDA 1c3qA 178 :SHVYTLHNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 1c3qA 187 :HKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQLAAQQTA Number of specific fragments extracted= 11 number of extra gaps= 0 total=1472 Number of alignments=119 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 2 :SQ 1c3qA 1 :MD T0375 65 :HVA 1c3qA 3 :AQS T0375 76 :RYSVDL 1c3qA 6 :AAKCLT T0375 83 :YTVFQTTGSVPIATVIINE 1c3qA 12 :AVRRHSPLVHSITNNVVTN T0375 102 :ASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKML 1c3qA 32 :TANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMI T0375 149 :QRIDAHNTRQPPEQ 1c3qA 82 :KSANEHGVPVILDP T0375 163 :KIRVSVEVEKPREELFQLF 1c3qA 98 :AGATPFRTESARDIIREVR T0375 184 :GDVVFVSKDVAKHL 1c3qA 117 :LAAIRGNAAEIAHT T0375 198 :GF 1c3qA 132 :GV T0375 200 :QSAEEALRGLYGR 1c3qA 148 :GDIIRLAQQAAQK T0375 216 :GAVLVCAWAEEGADALG 1c3qA 161 :LNTVIAITGEVDVIADT T0375 234 :DGKLLHSDAF 1c3qA 178 :SHVYTLHNGH T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGC 1c3qA 188 :KLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAI T0375 281 :QVAGKKCGL 1c3qA 227 :VAAQLAAQQ T0375 290 :QGFDGI 1c3qA 239 :KGPGSF Number of specific fragments extracted= 15 number of extra gaps= 0 total=1487 Number of alignments=120 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 2 :SQ 1c3qA 1 :MD T0375 40 :NASNSCTILSLL 1c3qA 5 :SAAKCLTAVRRH T0375 54 :PCAFMGSMA 1c3qA 17 :SPLVHSITN T0375 64 :GHVADFVLDDLRRYSV 1c3qA 26 :NVVTNFTANGLLALGA T0375 82 :RYTVFQTT 1c3qA 42 :SPVMAYAK T0375 103 :SG 1c3qA 50 :EE T0375 123 :F 1c3qA 52 :V T0375 125 :KVDLTQFKWIHIE 1c3qA 53 :ADMAKIAGALVLN T0375 138 :GRNASEQVKML 1c3qA 67 :GTLSKESVEAM T0375 149 :QRIDAHNTRQPPEQ 1c3qA 82 :KSANEHGVPVILDP T0375 166 :VSVEVEKPREELFQLF 1c3qA 97 :GAGATPFRTESARDII T0375 182 :GYGDVVFVSKDVAKHL 1c3qA 115 :VRLAAIRGNAAEIAHT T0375 198 :GF 1c3qA 132 :GV T0375 200 :QSAEEALRGLYGRV 1c3qA 148 :GDIIRLAQQAAQKL T0375 216 :GAVLVCAW 1c3qA 162 :NTVIAITG T0375 226 :EGADALG 1c3qA 170 :EVDVIAD T0375 234 :DGKLLHSDAF 1c3qA 177 :TSHVYTLHNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGC 1c3qA 187 :HKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAI T0375 281 :QVAGKKCGLQGFDG 1c3qA 227 :VAAQLAAQQTADKG Number of specific fragments extracted= 19 number of extra gaps= 0 total=1506 Number of alignments=121 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 2 :SQ 1c3qA 1 :MD T0375 40 :NASNSCTILSLL 1c3qA 5 :SAAKCLTAVRRH T0375 54 :PCAFMGSMA 1c3qA 17 :SPLVHSITN T0375 64 :GHVADFVLDDLRRYSVDL 1c3qA 26 :NVVTNFTANGLLALGASP T0375 84 :TVF 1c3qA 44 :VMA T0375 118 :VSATDFEK 1c3qA 47 :YAKEEVAD T0375 127 :DLTQFKWIHIE 1c3qA 55 :MAKIAGALVLN T0375 138 :GRNASEQ 1c3qA 67 :GTLSKES T0375 145 :VKMLQRIDAHNTRQPPEQ 1c3qA 78 :IIAGKSANEHGVPVILDP T0375 163 :KIRV 1c3qA 97 :GAGA T0375 170 :VEKPREELFQLFGY 1c3qA 101 :TPFRTESARDIIRE T0375 184 :GDVVFVSKDVAKHL 1c3qA 117 :LAAIRGNAAEIAHT T0375 198 :GF 1c3qA 132 :GV T0375 200 :QSAEEALRGLYGRV 1c3qA 148 :GDIIRLAQQAAQKL T0375 215 :K 1c3qA 162 :N T0375 217 :AVLVCAW 1c3qA 163 :TVIAITG T0375 226 :EGADALG 1c3qA 170 :EVDVIAD T0375 234 :DGKLLHSDAF 1c3qA 177 :TSHVYTLHNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQV 1c3qA 187 :HKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISS T0375 283 :AGKKCGLQGFDGI 1c3qA 228 :AAQLAAQQTADKG Number of specific fragments extracted= 20 number of extra gaps= 0 total=1526 Number of alignments=122 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 113 :RSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKML 1c3qA 43 :PVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMI T0375 149 :QRIDAHNTRQPPEQ 1c3qA 82 :KSANEHGVPVILDP T0375 163 :KIRVSVEVEKPREELFQL 1c3qA 98 :AGATPFRTESARDIIREV T0375 183 :YGDVVFVSKDVAKHL 1c3qA 116 :RLAAIRGNAAEIAHT T0375 198 :GF 1c3qA 132 :GV T0375 200 :QSAEEALRGLYGR 1c3qA 148 :GDIIRLAQQAAQK T0375 216 :GAVLVCAWAEEGADALG 1c3qA 161 :LNTVIAITGEVDVIADT T0375 234 :DGKLLHSDA 1c3qA 178 :SHVYTLHNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGC 1c3qA 187 :HKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAI Number of specific fragments extracted= 9 number of extra gaps= 0 total=1535 Number of alignments=123 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 104 :GSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKML 1c3qA 34 :NGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMI T0375 149 :QRIDAHNTRQPPEQ 1c3qA 82 :KSANEHGVPVILDP T0375 163 :KIRVSVEVEKPREELFQLF 1c3qA 98 :AGATPFRTESARDIIREVR T0375 184 :GDVVFVSKDVAKHL 1c3qA 117 :LAAIRGNAAEIAHT T0375 198 :GF 1c3qA 132 :GV T0375 200 :QSAEEALRGLYGR 1c3qA 148 :GDIIRLAQQAAQK T0375 216 :GAVLVCAWAEEGADALG 1c3qA 161 :LNTVIAITGEVDVIADT T0375 234 :DGKLLHSDAF 1c3qA 178 :SHVYTLHNGH T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFG 1c3qA 188 :KLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAA Number of specific fragments extracted= 9 number of extra gaps= 0 total=1544 Number of alignments=124 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 55 :CAFMGSMA 1c3qA 18 :PLVHSITN T0375 64 :GHVADFVLDDLRRYSV 1c3qA 26 :NVVTNFTANGLLALGA T0375 82 :RYTVFQTT 1c3qA 42 :SPVMAYAK T0375 103 :SG 1c3qA 50 :EE T0375 123 :F 1c3qA 52 :V T0375 125 :KVDLTQFKWIHIE 1c3qA 53 :ADMAKIAGALVLN T0375 138 :GRNASEQVKML 1c3qA 67 :GTLSKESVEAM T0375 149 :QRIDAHNTRQPPEQ 1c3qA 82 :KSANEHGVPVILDP T0375 166 :VSVEVEKPREELFQLF 1c3qA 97 :GAGATPFRTESARDII T0375 182 :GYGDVVFVSKDVAKHL 1c3qA 115 :VRLAAIRGNAAEIAHT T0375 198 :GF 1c3qA 132 :GV T0375 200 :QSAEEALRGLYGRV 1c3qA 148 :GDIIRLAQQAAQKL T0375 216 :GAVLVCAW 1c3qA 162 :NTVIAITG T0375 226 :EGADALG 1c3qA 170 :EVDVIAD T0375 234 :DGKLLHSDAF 1c3qA 177 :TSHVYTLHNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 1c3qA 187 :HKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQ Number of specific fragments extracted= 16 number of extra gaps= 0 total=1560 Number of alignments=125 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 41 :ASNSCTILSLL 1c3qA 6 :AAKCLTAVRRH T0375 54 :PCAFMGSMA 1c3qA 17 :SPLVHSITN T0375 64 :GHVADFVLDDLRRYSVDL 1c3qA 26 :NVVTNFTANGLLALGASP T0375 84 :TVF 1c3qA 44 :VMA T0375 118 :VSATDFEK 1c3qA 47 :YAKEEVAD T0375 127 :DLTQFKWIHIE 1c3qA 55 :MAKIAGALVLN T0375 138 :GRNASEQ 1c3qA 67 :GTLSKES T0375 145 :VKMLQRIDAHNTRQPPEQ 1c3qA 78 :IIAGKSANEHGVPVILDP T0375 163 :KIRV 1c3qA 97 :GAGA T0375 170 :VEKPREELFQLFGY 1c3qA 101 :TPFRTESARDIIRE T0375 184 :GDVVFVSKDVAKHL 1c3qA 117 :LAAIRGNAAEIAHT T0375 198 :GF 1c3qA 132 :GV T0375 200 :QSAEEALRGLYGRV 1c3qA 148 :GDIIRLAQQAAQKL T0375 215 :K 1c3qA 162 :N T0375 217 :AVLVCAW 1c3qA 163 :TVIAITG T0375 226 :EGADALG 1c3qA 170 :EVDVIAD T0375 234 :DGKLLHSDAF 1c3qA 177 :TSHVYTLHNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 1c3qA 187 :HKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQ Number of specific fragments extracted= 18 number of extra gaps= 0 total=1578 Number of alignments=126 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 71 :LDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1c3qA 1 :MDAQSAAKCLTAVRRHSPLVHSITNNVVTNFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKE T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1c3qA 76 :AMIIAGKSANEHGVPVILDP T0375 163 :KIRVSVEVEKPREELFQL 1c3qA 98 :AGATPFRTESARDIIREV T0375 183 :YGDVVFVSKDVAKHL 1c3qA 116 :RLAAIRGNAAEIAHT T0375 198 :GFQ 1c3qA 132 :GVT T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPD 1c3qA 146 :GGGDIIRLAQQAAQKLNTVIAITGEVDVIADTSH T0375 237 :LLHSDAF 1c3qA 180 :VYTLHNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1c3qA 187 :HKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQL T0375 290 :QGFDGIV 1c3qA 263 :WATIERV Number of specific fragments extracted= 9 number of extra gaps= 0 total=1587 Number of alignments=127 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 1 :GS 1c3qA 1 :MD T0375 68 :DFVLDD 1c3qA 4 :QSAAKC T0375 81 :LRYTVFQTTGSVPIATVII 1c3qA 10 :LTAVRRHSPLVHSITNNVV T0375 100 :NEASG 1c3qA 31 :FTANG T0375 106 :RTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1c3qA 36 :LLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKE T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1c3qA 76 :AMIIAGKSANEHGVPVILDP T0375 163 :KIRVSVEVEKPREELFQLF 1c3qA 98 :AGATPFRTESARDIIREVR T0375 183 :Y 1c3qA 117 :L T0375 185 :DVVFVSKDVAKHL 1c3qA 118 :AAIRGNAAEIAHT T0375 198 :GFQ 1c3qA 132 :GVT T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPD 1c3qA 146 :GGGDIIRLAQQAAQKLNTVIAITGEVDVIADTSH T0375 236 :KLLHSDAFP 1c3qA 180 :VYTLHNGHK T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1c3qA 189 :LLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQL Number of specific fragments extracted= 13 number of extra gaps= 0 total=1600 Number of alignments=128 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 1 :GS 1c3qA 1 :MD T0375 40 :NASNSCTILSLL 1c3qA 5 :SAAKCLTAVRRH T0375 54 :PCAFMGSMAP 1c3qA 17 :SPLVHSITNN T0375 65 :HVADFVLDDLRRYSV 1c3qA 27 :VVTNFTANGLLALGA T0375 82 :RYTVFQTTG 1c3qA 42 :SPVMAYAKE T0375 121 :T 1c3qA 51 :E T0375 123 :F 1c3qA 52 :V T0375 125 :KVDLTQFKWIHIEGRNA 1c3qA 53 :ADMAKIAGALVLNIGTL T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1c3qA 76 :AMIIAGKSANEHGVPVILDP T0375 163 :KIRVS 1c3qA 97 :GAGAT T0375 171 :EKPREELFQLF 1c3qA 102 :PFRTESARDII T0375 182 :GYGDVVFVSKDVAKHL 1c3qA 115 :VRLAAIRGNAAEIAHT T0375 198 :GFQ 1c3qA 132 :GVT T0375 201 :SAEEALRGLYGRVRK 1c3qA 146 :GGGDIIRLAQQAAQK T0375 216 :GAVLVCA 1c3qA 162 :NTVIAIT T0375 224 :AE 1c3qA 169 :GE T0375 227 :GADALGPD 1c3qA 171 :VDVIADTS T0375 236 :KLLHSDAF 1c3qA 179 :HVYTLHNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1c3qA 187 :HKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQL T0375 293 :DGIV 1c3qA 269 :VTVS Number of specific fragments extracted= 20 number of extra gaps= 0 total=1620 Number of alignments=129 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 1 :GS 1c3qA 1 :MD T0375 40 :NASNSCTILSLL 1c3qA 5 :SAAKCLTAVRRH T0375 54 :PCAFMGSMAP 1c3qA 17 :SPLVHSITNN T0375 65 :HVADFVLDDLRRYSVDLRY 1c3qA 27 :VVTNFTANGLLALGASPVM T0375 117 :DVSATDFEK 1c3qA 46 :AYAKEEVAD T0375 127 :DLTQFKWIHIEGRNA 1c3qA 55 :MAKIAGALVLNIGTL T0375 142 :S 1c3qA 71 :K T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1c3qA 76 :AMIIAGKSANEHGVPVILDP T0375 163 :KIRVS 1c3qA 97 :GAGAT T0375 171 :EKPREELFQLFGY 1c3qA 102 :PFRTESARDIIRE T0375 184 :GDVVFVSKDVAKHL 1c3qA 117 :LAAIRGNAAEIAHT T0375 198 :GFQ 1c3qA 132 :GVT T0375 201 :S 1c3qA 147 :G T0375 203 :EEALRGLYGRVRK 1c3qA 148 :GDIIRLAQQAAQK T0375 216 :GAVLVCAW 1c3qA 162 :NTVIAITG T0375 226 :EGADALGPD 1c3qA 170 :EVDVIADTS T0375 236 :KLLHSDAF 1c3qA 179 :HVYTLHNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1c3qA 187 :HKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQL Number of specific fragments extracted= 18 number of extra gaps= 0 total=1638 Number of alignments=130 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 113 :RSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1c3qA 43 :PVMAYAKEEVADMAKIAGALVLNIGTLSKE T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1c3qA 76 :AMIIAGKSANEHGVPVILDP T0375 163 :KIRVSVEVEKPREELFQL 1c3qA 98 :AGATPFRTESARDIIREV T0375 183 :YGDVVFVSKDVAKHL 1c3qA 116 :RLAAIRGNAAEIAHT T0375 198 :GFQ 1c3qA 132 :GVT T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPD 1c3qA 146 :GGGDIIRLAQQAAQKLNTVIAITGEVDVIADTSH T0375 237 :LLHSDAF 1c3qA 180 :VYTLHNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGC 1c3qA 187 :HKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAI Number of specific fragments extracted= 8 number of extra gaps= 0 total=1646 Number of alignments=131 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 101 :EASG 1c3qA 32 :TANG T0375 106 :RTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1c3qA 36 :LLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKE T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1c3qA 76 :AMIIAGKSANEHGVPVILDP T0375 163 :KIRVSVEVEKPREELFQLF 1c3qA 98 :AGATPFRTESARDIIREVR T0375 183 :Y 1c3qA 117 :L T0375 185 :DVVFVSKDVAKHL 1c3qA 118 :AAIRGNAAEIAHT T0375 198 :GFQ 1c3qA 132 :GVT T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPD 1c3qA 146 :GGGDIIRLAQQAAQKLNTVIAITGEVDVIADTSH T0375 236 :KLLHSDAFP 1c3qA 180 :VYTLHNGHK T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQ 1c3qA 189 :LLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAIS Number of specific fragments extracted= 10 number of extra gaps= 0 total=1656 Number of alignments=132 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 55 :CAFMGSMA 1c3qA 18 :PLVHSITN T0375 64 :GHVADFVLDDLRRYSV 1c3qA 26 :NVVTNFTANGLLALGA T0375 82 :RYTVFQTTG 1c3qA 42 :SPVMAYAKE T0375 121 :T 1c3qA 51 :E T0375 123 :F 1c3qA 52 :V T0375 125 :KVDLTQFKWIHIEGRNA 1c3qA 53 :ADMAKIAGALVLNIGTL T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1c3qA 76 :AMIIAGKSANEHGVPVILDP T0375 163 :KIRVS 1c3qA 97 :GAGAT T0375 171 :EKPREELFQLF 1c3qA 102 :PFRTESARDII T0375 182 :GYGDVVFVSKDVAKHL 1c3qA 115 :VRLAAIRGNAAEIAHT T0375 198 :GFQ 1c3qA 132 :GVT T0375 201 :SAEEALRGLYGRVRK 1c3qA 146 :GGGDIIRLAQQAAQK T0375 216 :GAVLVCA 1c3qA 162 :NTVIAIT T0375 224 :AE 1c3qA 169 :GE T0375 227 :GADALGPD 1c3qA 171 :VDVIADTS T0375 236 :KLLHSDAF 1c3qA 179 :HVYTLHNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 1c3qA 187 :HKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQ Number of specific fragments extracted= 17 number of extra gaps= 0 total=1673 Number of alignments=133 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 40 :NASNSCTILSLL 1c3qA 5 :SAAKCLTAVRRH T0375 54 :PCAFMGSMAP 1c3qA 17 :SPLVHSITNN T0375 65 :HVADFVLDDLRRYSVDLRY 1c3qA 27 :VVTNFTANGLLALGASPVM T0375 117 :DVSATDFEK 1c3qA 46 :AYAKEEVAD T0375 127 :DLTQFKWIHIEGRNA 1c3qA 55 :MAKIAGALVLNIGTL T0375 142 :S 1c3qA 71 :K T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1c3qA 76 :AMIIAGKSANEHGVPVILDP T0375 163 :KIRVS 1c3qA 97 :GAGAT T0375 171 :EKPREELFQLFGY 1c3qA 102 :PFRTESARDIIRE T0375 184 :GDVVFVSKDVAKHL 1c3qA 117 :LAAIRGNAAEIAHT T0375 198 :GFQ 1c3qA 132 :GVT T0375 201 :S 1c3qA 147 :G T0375 203 :EEALRGLYGRVRK 1c3qA 148 :GDIIRLAQQAAQK T0375 216 :GAVLVCAW 1c3qA 162 :NTVIAITG T0375 226 :EGADALGPD 1c3qA 170 :EVDVIADTS T0375 236 :KLLHSDAF 1c3qA 179 :HVYTLHNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 1c3qA 187 :HKLLTKVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQ Number of specific fragments extracted= 17 number of extra gaps= 0 total=1690 Number of alignments=134 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set Warning: unaligning (T0375)G279 because last residue in template chain is (1c3qA)S272 T0375 71 :LDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 1c3qA 1 :MDAQSAAKCLTAVRRHSPLVHSITNNVVTNFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKES T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLF 1c3qA 75 :EAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDII T0375 182 :GYGDVVFVSKDVAKHLGFQ 1c3qA 115 :VRLAAIRGNAAEIAHTVGV T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRV 1c3qA 146 :GGGDIIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKLLTKV T0375 252 :LGAGDTFNASVIFSL 1c3qA 194 :TGAGCLLTSVVGAFC T0375 267 :SQGRSVQEALRF 1c3qA 260 :VQEWATIERVTV Number of specific fragments extracted= 6 number of extra gaps= 0 total=1696 Number of alignments=135 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 1 :G 1c3qA 1 :M T0375 40 :NASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSV 1c3qA 2 :DAQSAAKCLTAVRRHSPLVHSITNNVVTNFTANGLLALGA T0375 112 :DRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1c3qA 42 :SPVMAYAKEEVADMAKIAGALVLNIGTLSKE T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1c3qA 75 :EAMIIAGKSANEHGVPVILDPVGA T0375 174 :REELFQLFGYGDV 1c3qA 105 :TESARDIIREVRL T0375 187 :VFVSKDVAKHLGFQ 1c3qA 120 :IRGNAAEIAHTVGV T0375 203 :EEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFP 1c3qA 148 :GDIIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKL T0375 248 :VVDTLGAGDTFNASVIFSL 1c3qA 190 :LTKVTGAGCLLTSVVGAFC T0375 278 :FGCQVAGKKCGLQGFDGIV 1c3qA 227 :VAAQLAAQQTADKGPGSFQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=1705 Number of alignments=136 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 36 :QRGGNASNSCTILSLLGAPCAFMG 1c3qA 1 :MDAQSAAKCLTAVRRHSPLVHSIT T0375 63 :PGHVADFVLDDLRRYSVDLRYTVFQTT 1c3qA 25 :NNVVTNFTANGLLALGASPVMAYAKEE T0375 124 :EKVDLTQFKWIHIEGRNASE 1c3qA 52 :VADMAKIAGALVLNIGTLSK T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFG 1c3qA 75 :EAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIR T0375 183 :YGDVVFVSKDVAKHLGFQ 1c3qA 116 :RLAAIRGNAAEIAHTVGV T0375 201 :SAEEALRGLYGRVRKGAVLVCA 1c3qA 147 :GGDIIRLAQQAAQKLNTVIAIT T0375 224 :AEEG 1c3qA 169 :GEVD T0375 229 :DALGPDGK 1c3qA 173 :VIADTSHV T0375 238 :LHSDAFPP 1c3qA 181 :YTLHNGHK T0375 250 :DTLGAGDTFNASVIFSLSQGRSVQEALRFGC 1c3qA 192 :KVTGAGCLLTSVVGAFCAVEENPLFAAIAAI T0375 281 :QVAGKKCGLQGFDG 1c3qA 227 :VAAQLAAQQTADKG Number of specific fragments extracted= 11 number of extra gaps= 0 total=1716 Number of alignments=137 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 36 :QRGGNASNSCTILSLLGAPCAFMGS 1c3qA 1 :MDAQSAAKCLTAVRRHSPLVHSITN T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTT 1c3qA 26 :NVVTNFTANGLLALGASPVMAYAKEE T0375 124 :EKVDLTQFKWIHIEGRNASE 1c3qA 52 :VADMAKIAGALVLNIGTLSK T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFG 1c3qA 75 :EAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIR T0375 183 :YGDVVFVSKDVAKHLGFQ 1c3qA 116 :RLAAIRGNAAEIAHTVGV T0375 205 :ALRGLYGRVRKG 1c3qA 152 :RLAQQAAQKLNT T0375 218 :VLVCA 1c3qA 164 :VIAIT T0375 225 :EEGADALGPDGKLLHSDAFP 1c3qA 169 :GEVDVIADTSHVYTLHNGHK T0375 250 :DTLGAGDTFNASVIFSL 1c3qA 192 :KVTGAGCLLTSVVGAFC T0375 267 :SQGRSVQEALRFGCQV 1c3qA 236 :TADKGPGSFQIELLNK Number of specific fragments extracted= 10 number of extra gaps= 0 total=1726 Number of alignments=138 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 108 :ILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 1c3qA 36 :LLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSK T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDV 1c3qA 75 :EAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIREVRL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1728 Number of alignments=139 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 120 :ATDFEKVDLTQFKWIHIEGRNA 1c3qA 50 :EEVADMAKIAGALVLNIGTLSK T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1c3qA 75 :EAMIIAGKSANEHGVPVILDPVGA T0375 174 :REELFQLFGYGDV 1c3qA 105 :TESARDIIREVRL T0375 187 :VFVSKDVAKHLGFQ 1c3qA 120 :IRGNAAEIAHTVGV T0375 203 :EEALRGLYGRVRKGAVLVCAWAEEGADALGPDGK 1c3qA 148 :GDIIRLAQQAAQKLNTVIAITGEVDVIADTSHVY Number of specific fragments extracted= 5 number of extra gaps= 0 total=1733 Number of alignments=140 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 57 :FMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 1c3qA 19 :LVHSITNNVVTNFTANGLLALGASPVMAYAKEE T0375 124 :EKVDLTQFKWIHIEGRNASE 1c3qA 52 :VADMAKIAGALVLNIGTLSK T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFG 1c3qA 75 :EAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIR T0375 183 :YGDVVFVSKDVAKHLGFQ 1c3qA 116 :RLAAIRGNAAEIAHTVGV T0375 201 :SAEEALRGLYGRVRKGAVLVCA 1c3qA 147 :GGDIIRLAQQAAQKLNTVIAIT T0375 224 :AEEG 1c3qA 169 :GEVD T0375 229 :DALGPDGK 1c3qA 173 :VIADTSHV T0375 238 :LHSDAFPP 1c3qA 181 :YTLHNGHK T0375 250 :DTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 1c3qA 192 :KVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=1742 Number of alignments=141 # 1c3qA read from 1c3qA/merged-a2m # found chain 1c3qA in template set T0375 40 :NASNSCTILSLLGAPCAFMGS 1c3qA 5 :SAAKCLTAVRRHSPLVHSITN T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTT 1c3qA 26 :NVVTNFTANGLLALGASPVMAYAKEE T0375 124 :EKVDLTQFKWIHIEGRNASE 1c3qA 52 :VADMAKIAGALVLNIGTLSK T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFG 1c3qA 75 :EAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIR T0375 183 :YGDVVFVSKDVAKHLGFQ 1c3qA 116 :RLAAIRGNAAEIAHTVGV T0375 205 :ALRGLYGRVRKG 1c3qA 152 :RLAQQAAQKLNT T0375 218 :VLVCA 1c3qA 164 :VIAIT T0375 225 :EEGADALGPDGKLLHSDAFP 1c3qA 169 :GEVDVIADTSHVYTLHNGHK T0375 250 :DTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 1c3qA 192 :KVTGAGCLLTSVVGAFCAVEENPLFAAIAAISSYGVAAQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=1751 Number of alignments=142 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2d13A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2d13A expands to /projects/compbio/data/pdb/2d13.pdb.gz 2d13A:# T0375 read from 2d13A/merged-a2m # 2d13A read from 2d13A/merged-a2m # adding 2d13A to template set # found chain 2d13A in template set T0375 1 :GSQI 2d13A 28 :GLRV T0375 5 :LCV 2d13A 33 :YLV T0375 9 :LVVLDVISLVDKYPKEDSEIRCLSQRWQR 2d13A 77 :KEVEDLKNVLEGLKVDGIVAGALASRYQK T0375 40 :NA 2d13A 106 :ER T0375 44 :SCTILSLLGAPCAFMGSMA 2d13A 108 :IENVARELGLKVYTPAWEK T0375 160 :PEQKIRVSVEVEKPREELFQLFGYG 2d13A 127 :DPYQYMLEIIKLGFKVVFVAVSAYG T0375 185 :DVVFVSKDVAKHLGFQS 2d13A 153 :NESWLGRELNYKNLEEL T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGA 2d13A 175 :KYGIHIAGEGGEFETFVLDMPFFKAKI T0375 230 :ALGPDGKLLHSDAFPPPRVVDTLGA 2d13A 202 :VIDDAEKFWDGLSGKFIIKRAHLEW Number of specific fragments extracted= 9 number of extra gaps= 0 total=1760 Number of alignments=143 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)N40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0375)A62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 T0375 8 :G 2d13A 3 :G T0375 9 :LVVL 2d13A 7 :VAVL T0375 13 :DVISLVDKYPKEDSEI 2d13A 16 :DSNYALYWALKSGLRV T0375 29 :RCLSQRWQ 2d13A 33 :YLVSMVSE T0375 41 :ASNSCTILSLLGAP 2d13A 52 :VELTSLQARALGIP T0375 57 :FMGSM 2d13A 66 :IIKGF T0375 63 :PGHVA 2d13A 122 :PAWEK T0375 191 :KDVAKHLGFQ 2d13A 142 :VVFVAVSAYG T0375 201 :S 2d13A 161 :L T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEG 2d13A 175 :KYGIHIAGEGGEFETFVLDMPFFKAK T0375 229 :DALGPDGKLLHSDAFPPPRVVDTLGA 2d13A 201 :IVIDDAEKFWDGLSGKFIIKRAHLEW Number of specific fragments extracted= 11 number of extra gaps= 0 total=1771 Number of alignments=144 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set T0375 10 :VVLDVISLVDKYPKEDSEIRCLSQRWQR 2d13A 78 :EVEDLKNVLEGLKVDGIVAGALASRYQK T0375 40 :NA 2d13A 106 :ER T0375 44 :SCTILSLLGAPCAFMGSMA 2d13A 108 :IENVARELGLKVYTPAWEK T0375 293 :D 2d13A 127 :D Number of specific fragments extracted= 4 number of extra gaps= 0 total=1775 Number of alignments=145 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set T0375 11 :VLDVISLVDKYPKEDSEIRCLSQRWQR 2d13A 79 :VEDLKNVLEGLKVDGIVAGALASRYQK T0375 40 :N 2d13A 107 :R T0375 44 :SCTILSLLGAPCAFMGSMA 2d13A 108 :IENVARELGLKVYTPAWEK T0375 250 :DTLG 2d13A 222 :AHLE Number of specific fragments extracted= 4 number of extra gaps= 0 total=1779 Number of alignments=146 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)R37 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)N40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0375)S60 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)P116 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 1 :GSQILCVGL 2d13A 3 :GLADVAVLY T0375 12 :LDVISLVDKYPKEDSEI 2d13A 15 :KDSNYALYWALKSGLRV T0375 29 :RCLSQRWQ 2d13A 33 :YLVSMVSE T0375 41 :ASNSCTILSLLGAPCAFMG 2d13A 52 :VELTSLQARALGIPIIKGF T0375 117 :DVSAT 2d13A 75 :KEKEV T0375 122 :DFEKVDLTQFKWIHIEGRNASEQVKMLQRI 2d13A 82 :LKNVLEGLKVDGIVAGALASRYQKERIENV T0375 153 :AHN 2d13A 112 :ARE T0375 160 :PEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAK 2d13A 115 :LGLKVYTPAWEKDPYQYMLEIIKLGFKVVFVAVSAY T0375 196 :HLGFQSAEEALRGLYGRVRKGAVLVCA 2d13A 156 :WLGRELNYKNLEELKKLSEKYGIHIAG T0375 230 :ALGPDGKLLHSDAFPPPRVVDTLGAGDT 2d13A 183 :EGGEFETFVLDMPFFKAKIVIDDAEKFW T0375 293 :DGIV 2d13A 211 :DGLS Number of specific fragments extracted= 11 number of extra gaps= 0 total=1790 Number of alignments=147 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)R37 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)S60 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 T0375 3 :QILCVGL 2d13A 5 :ADVAVLY T0375 12 :LDVISLVDKYPKEDSEI 2d13A 15 :KDSNYALYWALKSGLRV T0375 29 :RCLSQRWQ 2d13A 33 :YLVSMVSE T0375 41 :ASNSCTILSLLGAPCAFMG 2d13A 52 :VELTSLQARALGIPIIKGF T0375 173 :PRE 2d13A 127 :DPY T0375 176 :ELFQLFGYGDVVFVSK 2d13A 131 :YMLEIIKLGFKVVFVA T0375 194 :AK 2d13A 147 :VS T0375 196 :HLGFQSAEEALRGLYGRVRKGAVLVCA 2d13A 156 :WLGRELNYKNLEELKKLSEKYGIHIAG T0375 230 :ALGPDGKLLHSDAFPPPRVVDTLGAGDT 2d13A 183 :EGGEFETFVLDMPFFKAKIVIDDAEKFW T0375 276 :LRFGCQVAGKKCGLQ 2d13A 211 :DGLSGKFIIKRAHLE Number of specific fragments extracted= 10 number of extra gaps= 0 total=1800 Number of alignments=148 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set T0375 58 :MGSMAPGHVA 2d13A 117 :LKVYTPAWEK T0375 246 :PRVVDTLGAGDTFNASVIFSLSQ 2d13A 127 :DPYQYMLEIIKLGFKVVFVAVSA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1802 Number of alignments=149 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set T0375 59 :GSMAPGHVA 2d13A 118 :KVYTPAWEK T0375 173 :PREELF 2d13A 127 :DPYQYM T0375 179 :QLFGYGDVVFVSK 2d13A 134 :EIIKLGFKVVFVA T0375 194 :AK 2d13A 147 :VS T0375 196 :HLGFQSAEEALRGLYGRVRKGAVLVCA 2d13A 156 :WLGRELNYKNLEELKKLSEKYGIHIAG T0375 230 :ALGPDGKLLHSDAFPPPRVVDTLGAGDT 2d13A 183 :EGGEFETFVLDMPFFKAKIVIDDAEKFW Number of specific fragments extracted= 6 number of extra gaps= 0 total=1808 Number of alignments=150 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)N40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0375)S60 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)G211 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 1 :GSQILCV 2d13A 28 :GLRVRYL T0375 41 :ASNSCTILSLLGAPCAFMG 2d13A 52 :VELTSLQARALGIPIIKGF T0375 212 :RVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLG 2d13A 75 :KEKEVEDLKNVLEGLKVDGIVAGALASRYQKERIENVARELG T0375 257 :TFNASVIFSLSQGRSVQEALRF 2d13A 117 :LKVYTPAWEKDPYQYMLEIIKL T0375 279 :GCQVAGKKCGLQGFDGIV 2d13A 153 :NESWLGRELNYKNLEELK Number of specific fragments extracted= 5 number of extra gaps= 0 total=1813 Number of alignments=151 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2d13A)V2 Warning: unaligning (T0375)N40 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0375)S60 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 T0375 3 :QILCVGLV 2d13A 4 :LADVAVLY T0375 12 :LDVISLVDKYPKEDSEIRCL 2d13A 15 :KDSNYALYWALKSGLRVRYL T0375 41 :ASNSCTILSLLGAPCAFMG 2d13A 52 :VELTSLQARALGIPIIKGF T0375 214 :RKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLG 2d13A 77 :KEVEDLKNVLEGLKVDGIVAGALASRYQKERIENVARELG T0375 257 :TFNASVIFSLSQGRSVQEALRF 2d13A 117 :LKVYTPAWEKDPYQYMLEIIKL T0375 279 :GCQVAGK 2d13A 177 :GIHIAGE T0375 286 :KCGLQGFDG 2d13A 207 :EKFWDGLSG T0375 295 :IV 2d13A 226 :WK Number of specific fragments extracted= 8 number of extra gaps= 0 total=1821 Number of alignments=152 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set T0375 219 :LVCAWAEEGADALGPDG 2d13A 169 :LKKLSEKYGIHIAGEGG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1822 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1822 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set T0375 277 :RFGCQVAGKKCGLQGF 2d13A 175 :KYGIHIAGEGGEFETF Number of specific fragments extracted= 1 number of extra gaps= 0 total=1823 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1823 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)E27 because first residue in template chain is (2d13A)V2 Warning: unaligning (T0375)H65 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)S78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)E101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 Warning: unaligning (T0375)R247 because last residue in template chain is (2d13A)K227 T0375 28 :IRCLSQRWQRGGNASNSCTILSLL 2d13A 3 :GLADVAVLYSGGKDSNYALYWALK T0375 52 :GAPCAFMGSMAPG 2d13A 28 :GLRVRYLVSMVSE T0375 79 :VDLRYTVFQTTGSVPIATV 2d13A 52 :VELTSLQARALGIPIIKGF T0375 116 :PDVSATDFEKVDLT 2d13A 75 :KEKEVEDLKNVLEG T0375 130 :QFKWIHIEGRNASEQVKML 2d13A 90 :KVDGIVAGALASRYQKERI T0375 149 :QRIDAHNTRQP 2d13A 110 :NVARELGLKVY T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2d13A 121 :TPAWEKDPYQYMLEIIKLGFKVVFVAVSAYGL T0375 198 :GF 2d13A 154 :ES T0375 200 :QSAEEALRGLYGRV 2d13A 163 :YKNLEELKKLSEKY T0375 216 :GAVLVCAWAEEGADALGP 2d13A 177 :GIHIAGEGGEFETFVLDM T0375 234 :DGKLLHSDAFPPP 2d13A 214 :SGKFIIKRAHLEW Number of specific fragments extracted= 11 number of extra gaps= 0 total=1834 Number of alignments=153 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)S78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)L115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 29 :RCLSQRWQRGGNASNSCTILSLL 2d13A 4 :LADVAVLYSGGKDSNYALYWALK T0375 52 :GAPCAFM 2d13A 28 :GLRVRYL T0375 59 :GSMAP 2d13A 36 :SMVSE T0375 79 :VDLRYTVFQTTGSVPIATV 2d13A 52 :VELTSLQARALGIPIIKGF T0375 116 :PDVSATDFEKVDLT 2d13A 75 :KEKEVEDLKNVLEG T0375 130 :QFKWIHIEGRNASEQVKML 2d13A 90 :KVDGIVAGALASRYQKERI T0375 149 :QRIDAHNTRQP 2d13A 110 :NVARELGLKVY T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2d13A 121 :TPAWEKDPYQYMLEIIKLGFKVVFVAVSAYGL T0375 198 :G 2d13A 154 :E T0375 200 :QSAEEALRGLYGRV 2d13A 164 :KNLEELKKLSEKYG T0375 216 :G 2d13A 178 :I T0375 218 :VLVCAWAEEGADAL 2d13A 179 :HIAGEGGEFETFVL T0375 239 :HSDAF 2d13A 193 :DMPFF T0375 245 :PPRVV 2d13A 198 :KAKIV T0375 250 :DT 2d13A 204 :DD T0375 263 :IFSLSQGRSVQEALRFGC 2d13A 206 :AEKFWDGLSGKFIIKRAH T0375 293 :DGI 2d13A 224 :LEW Number of specific fragments extracted= 17 number of extra gaps= 0 total=1851 Number of alignments=154 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)T89 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0375)D112 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)L115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 3 :QILCV 2d13A 6 :DVAVL T0375 36 :QRGGNASNSCTILSL 2d13A 11 :YSGGKDSNYALYWAL T0375 76 :RYSVDLRYT 2d13A 26 :KSGLRVRYL T0375 85 :VFQT 2d13A 37 :MVSE T0375 100 :NEA 2d13A 52 :VEL T0375 104 :GSRTILYY 2d13A 63 :GIPIIKGF T0375 116 :PDVSATDFEKVDLT 2d13A 75 :KEKEVEDLKNVLEG T0375 130 :QFKWIHIEGRNASEQVKML 2d13A 90 :KVDGIVAGALASRYQKERI T0375 149 :QRIDAHNTRQPPEQ 2d13A 110 :NVARELGLKVYTPA T0375 169 :EV 2d13A 124 :WE T0375 200 :QSAEEALRGLYGRV 2d13A 126 :KDPYQYMLEIIKLG T0375 216 :GAVLVCAWAEEG 2d13A 140 :FKVVFVAVSAYG T0375 234 :DGKLLHSDAFP 2d13A 214 :SGKFIIKRAHL T0375 294 :GI 2d13A 225 :EW Number of specific fragments extracted= 14 number of extra gaps= 0 total=1865 Number of alignments=155 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)F86 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)T89 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 1 :G 2d13A 2 :V T0375 3 :QILCVG 2d13A 6 :DVAVLY T0375 37 :RGGNASNSCTILSLL 2d13A 12 :SGGKDSNYALYWALK T0375 52 :GAPC 2d13A 28 :GLRV T0375 56 :AFMGSMAP 2d13A 33 :YLVSMVSE T0375 65 :HVADFVLDDL 2d13A 53 :ELTSLQARAL T0375 78 :SVDLRYTV 2d13A 63 :GIPIIKGF T0375 103 :SGS 2d13A 75 :KEK T0375 120 :ATDFEKVDLT 2d13A 79 :VEDLKNVLEG T0375 130 :QFKWIHIEGRNASEQVKML 2d13A 90 :KVDGIVAGALASRYQKERI T0375 149 :QRIDAHNTRQP 2d13A 110 :NVARELGLKVY T0375 166 :VSVEVEKPREELFQLFGY 2d13A 121 :TPAWEKDPYQYMLEIIKL T0375 189 :VSKDVAKHL 2d13A 161 :LNYKNLEEL T0375 207 :RGLYGRV 2d13A 171 :KLSEKYG T0375 216 :GA 2d13A 178 :IH T0375 223 :WAEEG 2d13A 181 :AGEGG T0375 228 :ADALG 2d13A 187 :FETFV T0375 238 :LHSDAF 2d13A 192 :LDMPFF T0375 245 :PPRVV 2d13A 198 :KAKIV T0375 292 :FDGI 2d13A 210 :WDGL Number of specific fragments extracted= 20 number of extra gaps= 0 total=1885 Number of alignments=156 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)K172 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 150 :RIDAHNTRQPPEQ 2d13A 58 :QARALGIPIIKGF T0375 173 :PREELFQLFGYGDVVFVSKDVAKHL 2d13A 75 :KEKEVEDLKNVLEGLKVDGIVAGAL T0375 198 :GF 2d13A 101 :SR T0375 200 :QSAEEALRGLYGRV 2d13A 126 :KDPYQYMLEIIKLG T0375 216 :GAVLVCAWAEEG 2d13A 140 :FKVVFVAVSAYG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1890 Number of alignments=157 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)S78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)L115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 34 :RWQRGGNASNSCTILSLL 2d13A 9 :VLYSGGKDSNYALYWALK T0375 52 :GAPCAFM 2d13A 28 :GLRVRYL T0375 59 :GSMAP 2d13A 36 :SMVSE T0375 79 :VDLRYTVFQTTGSVPIATV 2d13A 52 :VELTSLQARALGIPIIKGF T0375 116 :PDVSATDFEKVDLT 2d13A 75 :KEKEVEDLKNVLEG T0375 130 :QFKWIHIEGRNASEQVKML 2d13A 90 :KVDGIVAGALASRYQKERI T0375 149 :QRIDAHNTRQP 2d13A 110 :NVARELGLKVY T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2d13A 121 :TPAWEKDPYQYMLEIIKLGFKVVFVAVSAYGL T0375 198 :G 2d13A 154 :E T0375 200 :QSAEEALRGLYGRV 2d13A 164 :KNLEELKKLSEKYG T0375 216 :G 2d13A 178 :I T0375 218 :VLVCAWAEEGADAL 2d13A 179 :HIAGEGGEFETFVL Number of specific fragments extracted= 12 number of extra gaps= 0 total=1902 Number of alignments=158 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)T89 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0375)D112 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)L115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 54 :PCAFMGSMAPGHVA 2d13A 6 :DVAVLYSGGKDSNY T0375 70 :VLDDLRRYSVDLRYT 2d13A 20 :ALYWALKSGLRVRYL T0375 85 :VFQT 2d13A 37 :MVSE T0375 100 :NEA 2d13A 52 :VEL T0375 104 :GSRTILYY 2d13A 63 :GIPIIKGF T0375 116 :PDVSATDFEKVDLT 2d13A 75 :KEKEVEDLKNVLEG T0375 130 :QFKWIHIEGRNASEQVKML 2d13A 90 :KVDGIVAGALASRYQKERI T0375 149 :QRIDAHNTRQPPEQ 2d13A 110 :NVARELGLKVYTPA T0375 169 :EV 2d13A 124 :WE T0375 200 :QSAEEALRGLYGRV 2d13A 126 :KDPYQYMLEIIKLG T0375 216 :GAVLVCAWAEEGA 2d13A 140 :FKVVFVAVSAYGL Number of specific fragments extracted= 11 number of extra gaps= 0 total=1913 Number of alignments=159 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)F86 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)T89 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 2 :SQILCVG 2d13A 5 :ADVAVLY T0375 37 :RGGNASNSCTILSLL 2d13A 12 :SGGKDSNYALYWALK T0375 52 :GAPC 2d13A 28 :GLRV T0375 56 :AFMGSMAP 2d13A 33 :YLVSMVSE T0375 65 :HVADFVLDDL 2d13A 53 :ELTSLQARAL T0375 78 :SVDLRYTV 2d13A 63 :GIPIIKGF T0375 103 :SGS 2d13A 75 :KEK T0375 120 :ATDFEKVDLT 2d13A 79 :VEDLKNVLEG T0375 130 :QFKWIHIEGRNASEQVKML 2d13A 90 :KVDGIVAGALASRYQKERI T0375 149 :QRIDAHNTRQP 2d13A 110 :NVARELGLKVY T0375 166 :VSVEVEKPREELFQLFGY 2d13A 121 :TPAWEKDPYQYMLEIIKL T0375 189 :VSKDVAKHL 2d13A 161 :LNYKNLEEL T0375 207 :RGLYGRV 2d13A 171 :KLSEKYG T0375 216 :GA 2d13A 178 :IH T0375 223 :WAEEG 2d13A 181 :AGEGG T0375 228 :ADALG 2d13A 187 :FETFV T0375 238 :LHSDAF 2d13A 192 :LDMPFF T0375 245 :PPRVV 2d13A 198 :KAKIV Number of specific fragments extracted= 18 number of extra gaps= 0 total=1931 Number of alignments=160 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)E27 because first residue in template chain is (2d13A)V2 Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)T89 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0375)D112 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)L115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 Warning: unaligning (T0375)R247 because last residue in template chain is (2d13A)K227 T0375 28 :IRCLSQRWQRGGNASNSCTILSLL 2d13A 3 :GLADVAVLYSGGKDSNYALYWALK T0375 52 :GAPCAFM 2d13A 28 :GLRVRYL T0375 59 :GSMAP 2d13A 36 :SMVSE T0375 92 :VPIATVII 2d13A 52 :VELTSLQA T0375 101 :EASGSRTILYY 2d13A 60 :RALGIPIIKGF T0375 116 :PDVSATDFEKVDLT 2d13A 75 :KEKEVEDLKNVLEG T0375 130 :QFKWIHIEGRNAS 2d13A 90 :KVDGIVAGALASR T0375 143 :EQVKMLQRIDAHNTRQPPEQ 2d13A 104 :QKERIENVARELGLKVYTPA T0375 169 :EVEKPREELFQLFGY 2d13A 124 :WEKDPYQYMLEIIKL T0375 184 :GDVVFVSKDVAKHL 2d13A 147 :VSAYGLNESWLGRE T0375 198 :GFQSAEEALRGLYGR 2d13A 162 :NYKNLEELKKLSEKY T0375 216 :GAVLVCAWAEEGADALGP 2d13A 177 :GIHIAGEGGEFETFVLDM T0375 234 :DGKLLHSDAFPPP 2d13A 214 :SGKFIIKRAHLEW Number of specific fragments extracted= 13 number of extra gaps= 0 total=1944 Number of alignments=161 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2d13A)V2 Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)S78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0375)D112 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)L115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 28 :IRCLSQRWQRGGNASNSCTILSLL 2d13A 3 :GLADVAVLYSGGKDSNYALYWALK T0375 52 :GAPCAFM 2d13A 28 :GLRVRYL T0375 59 :GSMAP 2d13A 36 :SMVSE T0375 79 :VDLRYTVFQT 2d13A 52 :VELTSLQARA T0375 103 :SGSRTILYY 2d13A 62 :LGIPIIKGF T0375 116 :PDVSATDFEKVDLT 2d13A 75 :KEKEVEDLKNVLEG T0375 130 :QFKWIHIEGRNAS 2d13A 90 :KVDGIVAGALASR T0375 143 :EQVKMLQRIDAHNTRQPPEQ 2d13A 104 :QKERIENVARELGLKVYTPA T0375 169 :EVEKPREELFQLFGY 2d13A 124 :WEKDPYQYMLEIIKL T0375 184 :GDVVFVSKDVA 2d13A 147 :VSAYGLNESWL T0375 198 :GFQ 2d13A 158 :GRE T0375 201 :SAEEALRGLYGR 2d13A 165 :NLEELKKLSEKY T0375 216 :GAVLVCAWAEEGADALGP 2d13A 177 :GIHIAGEGGEFETFVLDM T0375 236 :KLLHSDAF 2d13A 195 :PFFKAKIV T0375 245 :PPRV 2d13A 203 :IDDA T0375 264 :FSLSQGRSVQEALRFGCQV 2d13A 207 :EKFWDGLSGKFIIKRAHLE T0375 295 :I 2d13A 226 :W Number of specific fragments extracted= 17 number of extra gaps= 0 total=1961 Number of alignments=162 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2d13A)V2 Warning: unaligning (T0375)P63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0375)Q87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)E101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 3 :QILCV 2d13A 6 :DVAVL T0375 36 :QRGGNASNSCTILSLL 2d13A 11 :YSGGKDSNYALYWALK T0375 52 :GAPCAFMGSM 2d13A 28 :GLRVRYLVSM T0375 64 :GHVADFVLD 2d13A 52 :VELTSLQAR T0375 76 :RYSVDL 2d13A 61 :ALGIPI T0375 83 :YTVF 2d13A 67 :IKGF T0375 102 :AS 2d13A 75 :KE T0375 118 :VSATDFEKVDLT 2d13A 77 :KEVEDLKNVLEG T0375 130 :QFKWIHIEGRNAS 2d13A 90 :KVDGIVAGALASR T0375 143 :EQVKMLQRIDAHNTRQPPEQ 2d13A 104 :QKERIENVARELGLKVYTPA T0375 169 :EVEKPREELFQLFGY 2d13A 124 :WEKDPYQYMLEIIKL T0375 189 :VSK 2d13A 152 :LNE T0375 195 :KHLGFQ 2d13A 155 :SWLGRE T0375 201 :SAEEALR 2d13A 162 :NYKNLEE T0375 209 :LYGRVRK 2d13A 169 :LKKLSEK T0375 216 :GA 2d13A 177 :GI T0375 223 :WAEEG 2d13A 181 :AGEGG T0375 228 :ADALGP 2d13A 190 :FVLDMP T0375 234 :DG 2d13A 212 :GL T0375 236 :KLLHSDAFP 2d13A 216 :KFIIKRAHL T0375 294 :GIV 2d13A 225 :EWK Number of specific fragments extracted= 21 number of extra gaps= 0 total=1982 Number of alignments=163 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)Q87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)E101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 1 :GS 2d13A 2 :VG T0375 3 :QILCV 2d13A 6 :DVAVL T0375 36 :QRGGNASNSCTI 2d13A 11 :YSGGKDSNYALY T0375 48 :LSLLGAPC 2d13A 24 :ALKSGLRV T0375 56 :AFMGSMAP 2d13A 33 :YLVSMVSE T0375 65 :HVADFVLDDL 2d13A 53 :ELTSLQARAL T0375 78 :SVDL 2d13A 63 :GIPI T0375 83 :YTVF 2d13A 67 :IKGF T0375 102 :ASG 2d13A 75 :KEK T0375 120 :ATDFEKVDLT 2d13A 79 :VEDLKNVLEG T0375 130 :QFKWIHIEGRNAS 2d13A 90 :KVDGIVAGALASR T0375 143 :EQVKMLQRIDAHNTRQPPEQ 2d13A 104 :QKERIENVARELGLKVYTPA T0375 169 :EVEKPREELFQLFGY 2d13A 124 :WEKDPYQYMLEIIKL T0375 189 :VSKD 2d13A 152 :LNES T0375 197 :L 2d13A 156 :W T0375 198 :GFQ 2d13A 158 :GRE T0375 201 :SAEEALR 2d13A 162 :NYKNLEE T0375 209 :LYGRVRK 2d13A 169 :LKKLSEK T0375 216 :GAV 2d13A 177 :GIH T0375 223 :WAEEG 2d13A 181 :AGEGG T0375 228 :ADALG 2d13A 189 :TFVLD T0375 233 :P 2d13A 195 :P T0375 234 :DG 2d13A 212 :GL T0375 237 :LLHSDAF 2d13A 214 :SGKFIIK T0375 245 :PPRVV 2d13A 221 :RAHLE Number of specific fragments extracted= 25 number of extra gaps= 0 total=2007 Number of alignments=164 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)T89 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0375)D112 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)L115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 35 :WQRGGNASNSCTILSLL 2d13A 10 :LYSGGKDSNYALYWALK T0375 52 :GAPCAFM 2d13A 28 :GLRVRYL T0375 59 :GSMAP 2d13A 36 :SMVSE T0375 92 :VPIATVII 2d13A 52 :VELTSLQA T0375 101 :EASGSRTILYY 2d13A 60 :RALGIPIIKGF T0375 116 :PDVSATDFEKVDLT 2d13A 75 :KEKEVEDLKNVLEG T0375 130 :QFKWIHIEGRNAS 2d13A 90 :KVDGIVAGALASR T0375 143 :EQVKMLQRIDAHNTRQPPEQ 2d13A 104 :QKERIENVARELGLKVYTPA T0375 169 :EVEKPREELFQLFGY 2d13A 124 :WEKDPYQYMLEIIKL T0375 184 :GDVVFVSKDVAKHL 2d13A 147 :VSAYGLNESWLGRE T0375 198 :GFQSAEEALRGLYGR 2d13A 162 :NYKNLEELKKLSEKY T0375 216 :GAVLVCAWAEEGADALG 2d13A 177 :GIHIAGEGGEFETFVLD Number of specific fragments extracted= 12 number of extra gaps= 0 total=2019 Number of alignments=165 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)S78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0375)D112 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)L115 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 34 :RWQRGGNASNSCTILSLL 2d13A 9 :VLYSGGKDSNYALYWALK T0375 52 :GAPCAFM 2d13A 28 :GLRVRYL T0375 59 :GSMAP 2d13A 36 :SMVSE T0375 79 :VDLRYTVFQT 2d13A 52 :VELTSLQARA T0375 103 :SGSRTILYY 2d13A 62 :LGIPIIKGF T0375 116 :PDVSATDFEKVDLT 2d13A 75 :KEKEVEDLKNVLEG T0375 130 :QFKWIHIEGRNAS 2d13A 90 :KVDGIVAGALASR T0375 143 :EQVKMLQRIDAHNTRQPPEQ 2d13A 104 :QKERIENVARELGLKVYTPA T0375 169 :EVEKPREELFQLFGY 2d13A 124 :WEKDPYQYMLEIIKL T0375 184 :GDVVFVSKDVA 2d13A 147 :VSAYGLNESWL T0375 198 :GFQ 2d13A 158 :GRE T0375 201 :SAEEALRGLYGR 2d13A 165 :NLEELKKLSEKY T0375 216 :GAVLVCAWAEEGADALGP 2d13A 177 :GIHIAGEGGEFETFVLDM Number of specific fragments extracted= 13 number of extra gaps= 0 total=2032 Number of alignments=166 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)P63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)N51 Warning: unaligning (T0375)Q87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)E101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 2 :SQILCV 2d13A 5 :ADVAVL T0375 36 :QRGGNASNSCTILSLL 2d13A 11 :YSGGKDSNYALYWALK T0375 52 :GAPCAFMGSM 2d13A 28 :GLRVRYLVSM T0375 64 :GHVADFVLD 2d13A 52 :VELTSLQAR T0375 76 :RYSVDL 2d13A 61 :ALGIPI T0375 83 :YTVF 2d13A 67 :IKGF T0375 102 :AS 2d13A 75 :KE T0375 118 :VSATDFEKVDLT 2d13A 77 :KEVEDLKNVLEG T0375 130 :QFKWIHIEGRNAS 2d13A 90 :KVDGIVAGALASR T0375 143 :EQVKMLQRIDAHNTRQPPEQ 2d13A 104 :QKERIENVARELGLKVYTPA T0375 169 :EVEKPREELFQLFGY 2d13A 124 :WEKDPYQYMLEIIKL T0375 189 :VSK 2d13A 152 :LNE T0375 195 :KHLGFQ 2d13A 155 :SWLGRE T0375 201 :SAEEALR 2d13A 162 :NYKNLEE T0375 209 :LYGRVRK 2d13A 169 :LKKLSEK T0375 216 :GA 2d13A 177 :GI T0375 223 :WAEEG 2d13A 181 :AGEGG T0375 228 :ADALG 2d13A 199 :AKIVI Number of specific fragments extracted= 18 number of extra gaps= 0 total=2050 Number of alignments=167 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)Q87 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)E101 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 2 :SQILCV 2d13A 5 :ADVAVL T0375 36 :QRGGNASNSCTI 2d13A 11 :YSGGKDSNYALY T0375 48 :LSLLGAPC 2d13A 24 :ALKSGLRV T0375 56 :AFMGSMAP 2d13A 33 :YLVSMVSE T0375 65 :HVADFVLDDL 2d13A 53 :ELTSLQARAL T0375 78 :SVDL 2d13A 63 :GIPI T0375 83 :YTVF 2d13A 67 :IKGF T0375 102 :ASG 2d13A 75 :KEK T0375 120 :ATDFEKVDLT 2d13A 79 :VEDLKNVLEG T0375 130 :QFKWIHIEGRNAS 2d13A 90 :KVDGIVAGALASR T0375 143 :EQVKMLQRIDAHNTRQPPEQ 2d13A 104 :QKERIENVARELGLKVYTPA T0375 169 :EVEKPREELFQLFGY 2d13A 124 :WEKDPYQYMLEIIKL T0375 189 :VSKD 2d13A 152 :LNES T0375 197 :L 2d13A 156 :W T0375 198 :GFQ 2d13A 158 :GRE T0375 201 :SAEEALR 2d13A 162 :NYKNLEE T0375 209 :LYGRVRK 2d13A 169 :LKKLSEK T0375 216 :GAV 2d13A 177 :GIH T0375 223 :WAEEG 2d13A 181 :AGEGG T0375 228 :ADALG 2d13A 189 :TFVLD T0375 233 :P 2d13A 195 :P Number of specific fragments extracted= 21 number of extra gaps= 0 total=2071 Number of alignments=168 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)E27 because first residue in template chain is (2d13A)V2 Warning: unaligning (T0375)H65 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)S91 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)I94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 Warning: unaligning (T0375)R247 because last residue in template chain is (2d13A)K227 T0375 28 :IRCLSQRWQRGGNASNSCTILSLL 2d13A 3 :GLADVAVLYSGGKDSNYALYWALK T0375 52 :GAPCAFMGSMAPG 2d13A 28 :GLRVRYLVSMVSE T0375 73 :DLRRYSVDLRYTVFQTTG 2d13A 53 :ELTSLQARALGIPIIKGF T0375 95 :ATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 2d13A 75 :KEKEVEDLKNVLEGLKVDGIVAGALASRYQKERIENVARELGLKVYTPA T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVS 2d13A 126 :KDPYQYMLEIIKLGFKVVFVAVSA T0375 175 :EELFQLFGYGDVVFVSKDVAKHLGFQ 2d13A 150 :YGLNESWLGRELNYKNLEELKKLSEK T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGK 2d13A 182 :GEGGEFETFVLDMPFFKAKIVIDDAEKFWDGLSGKF T0375 238 :LHSDAFPPP 2d13A 218 :IIKRAHLEW Number of specific fragments extracted= 8 number of extra gaps= 0 total=2079 Number of alignments=169 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2d13A)V2 Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)S91 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)I94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 3 :QI 2d13A 3 :GL T0375 30 :CLSQRWQRGGNASNSCTILSLL 2d13A 5 :ADVAVLYSGGKDSNYALYWALK T0375 52 :GAPCAFM 2d13A 28 :GLRVRYL T0375 59 :GSMAP 2d13A 36 :SMVSE T0375 73 :DLRRYSVDLRYTVFQTTG 2d13A 53 :ELTSLQARALGIPIIKGF T0375 95 :ATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 2d13A 75 :KEKEVEDLKNVLEGLKVDGIVAGALASRYQKERIENVARELGLKVYTPA T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 2d13A 126 :KDPYQYMLEIIKLGFKVVFVAVSA T0375 175 :EELFQLFGYGDVVFVSKDVAKHLGFQ 2d13A 150 :YGLNESWLGRELNYKNLEELKKLSEK T0375 201 :SAEEA 2d13A 184 :GGEFE T0375 208 :GLYGRVRKGAVLVCAWAEEGADALGPDG 2d13A 189 :TFVLDMPFFKAKIVIDDAEKFWDGLSGK T0375 274 :EALRFGCQ 2d13A 217 :FIIKRAHL T0375 294 :GIV 2d13A 225 :EWK Number of specific fragments extracted= 12 number of extra gaps= 0 total=2091 Number of alignments=170 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)Y111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)S114 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 2 :SQILCV 2d13A 5 :ADVAVL T0375 36 :QRGGNASNSCTILSLL 2d13A 11 :YSGGKDSNYALYWALK T0375 52 :GAPC 2d13A 28 :GLRV T0375 56 :AFMGSMAP 2d13A 33 :YLVSMVSE T0375 73 :DLRRYSVD 2d13A 58 :QARALGIP T0375 106 :RTILY 2d13A 66 :IIKGF T0375 115 :LPDVSATDFEKVDLTQFKWIHIEGRNA 2d13A 75 :KEKEVEDLKNVLEGLKVDGIVAGALAS T0375 143 :EQVKMLQRIDAHNTRQPPE 2d13A 102 :RYQKERIENVARELGLKVY T0375 163 :KI 2d13A 121 :TP T0375 198 :GFQSAEEA 2d13A 123 :AWEKDPYQ T0375 207 :RGLYGRVRKGAVL 2d13A 131 :YMLEIIKLGFKVV T0375 228 :ADALGPDG 2d13A 144 :FVAVSAYG T0375 241 :DAFP 2d13A 221 :RAHL T0375 294 :GIV 2d13A 225 :EWK Number of specific fragments extracted= 14 number of extra gaps= 0 total=2105 Number of alignments=171 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)Y111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)S114 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 Warning: unaligning (T0375)V248 because last residue in template chain is (2d13A)K227 T0375 2 :SQILCV 2d13A 5 :ADVAVL T0375 36 :QRGGNASNSCTILSLL 2d13A 11 :YSGGKDSNYALYWALK T0375 52 :GAPC 2d13A 28 :GLRV T0375 56 :AFMGSMAP 2d13A 33 :YLVSMVSE T0375 66 :VADFVLDDL 2d13A 54 :LTSLQARAL T0375 103 :SGSRTILY 2d13A 63 :GIPIIKGF T0375 115 :LPDVSATDFEKVDLTQFKWI 2d13A 75 :KEKEVEDLKNVLEGLKVDGI T0375 136 :IEGRNASEQVKMLQRIDAHNTRQPPE 2d13A 95 :VAGALASRYQKERIENVARELGLKVY T0375 167 :SVEVE 2d13A 121 :TPAWE T0375 172 :KPREELFQLFGY 2d13A 127 :DPYQYMLEIIKL T0375 189 :VSKD 2d13A 152 :LNES T0375 197 :LGFQ 2d13A 156 :WLGR T0375 201 :SAEEALRGLYGR 2d13A 161 :LNYKNLEELKKL T0375 213 :VRKGA 2d13A 175 :KYGIH T0375 227 :GADALGPDG 2d13A 188 :ETFVLDMPF T0375 238 :LHSDAFPPPR 2d13A 217 :FIIKRAHLEW Number of specific fragments extracted= 16 number of extra gaps= 0 total=2121 Number of alignments=172 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set T0375 35 :WQRGGNASNSCTILSLL 2d13A 10 :LYSGGKDSNYALYWALK T0375 52 :GAPCAFM 2d13A 28 :GLRVRYL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2123 Number of alignments=173 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)S91 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)I94 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 35 :WQRGGNASNSCTILSLL 2d13A 10 :LYSGGKDSNYALYWALK T0375 52 :GAPCAF 2d13A 28 :GLRVRY T0375 58 :MGSMAP 2d13A 35 :VSMVSE T0375 73 :DLRRYSVDLRYTVFQTTG 2d13A 53 :ELTSLQARALGIPIIKGF T0375 95 :ATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 2d13A 75 :KEKEVEDLKNVLEGLKVDGIVAGALASRYQKERIENVARELGLKVYTPA T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 2d13A 126 :KDPYQYMLEIIKLGFKVVFVAVSA T0375 176 :ELFQLFGYGDVVFVSKDVAKHLGFQ 2d13A 151 :GLNESWLGRELNYKNLEELKKLSEK Number of specific fragments extracted= 7 number of extra gaps= 0 total=2130 Number of alignments=174 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)Y111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)S114 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 2 :SQILCV 2d13A 5 :ADVAVL T0375 36 :QRGGNASNSCTILSLL 2d13A 11 :YSGGKDSNYALYWALK T0375 52 :GAPC 2d13A 28 :GLRV T0375 56 :AFMGSMAP 2d13A 33 :YLVSMVSE T0375 73 :DLRRYSVD 2d13A 58 :QARALGIP T0375 106 :RTILY 2d13A 66 :IIKGF T0375 115 :LPDVSATDFEKVDLTQFKWIHIEGRNA 2d13A 75 :KEKEVEDLKNVLEGLKVDGIVAGALAS T0375 143 :EQVKMLQRIDAHNTRQPPE 2d13A 102 :RYQKERIENVARELGLKVY T0375 163 :KI 2d13A 121 :TP T0375 198 :GFQSAEEA 2d13A 123 :AWEKDPYQ T0375 207 :RGLYGRVRKGAVLVCAWAEEG 2d13A 131 :YMLEIIKLGFKVVFVAVSAYG Number of specific fragments extracted= 11 number of extra gaps= 0 total=2141 Number of alignments=175 # 2d13A read from 2d13A/merged-a2m # found chain 2d13A in template set Warning: unaligning (T0375)G64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0375)Y111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 Warning: unaligning (T0375)S114 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2d13A)E74 T0375 1 :GSQILCV 2d13A 4 :LADVAVL T0375 36 :QRGGNASNSCTILSLL 2d13A 11 :YSGGKDSNYALYWALK T0375 52 :GAPC 2d13A 28 :GLRV T0375 56 :AFMGSMAP 2d13A 33 :YLVSMVSE T0375 66 :VADFVLDDL 2d13A 54 :LTSLQARAL T0375 103 :SGSRTILY 2d13A 63 :GIPIIKGF T0375 115 :LPDVSATDFEKVDLTQFKWI 2d13A 75 :KEKEVEDLKNVLEGLKVDGI T0375 136 :IEGRNASEQVKMLQRIDAHNTRQPPE 2d13A 95 :VAGALASRYQKERIENVARELGLKVY T0375 167 :SVEVE 2d13A 121 :TPAWE T0375 172 :KPREELFQLFGY 2d13A 127 :DPYQYMLEIIKL T0375 189 :VSKD 2d13A 152 :LNES T0375 197 :LGFQ 2d13A 156 :WLGR T0375 201 :SAEEALRGLYGRV 2d13A 161 :LNYKNLEELKKLS Number of specific fragments extracted= 13 number of extra gaps= 0 total=2154 Number of alignments=176 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gca/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0375 read from 1gca/merged-a2m # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Warning: unaligning (T0375)S240 because of BadResidue code BAD_PEPTIDE in next template residue (1gca)D236 Warning: unaligning (T0375)D241 because of BadResidue code BAD_PEPTIDE at template residue (1gca)D236 T0375 1 :GSQILCVGLV 1gca 2 :DTRIGVTIYK T0375 25 :DSEIRCLSQRWQRGG 1gca 18 :SVVRKAIEKDGKSAP T0375 42 :SNSCTILSLLGA 1gca 33 :DVQLLMNDSQND T0375 54 :PCAFMGSMAP 1gca 48 :QNDQIDVLLA T0375 65 :HVADFVLDDL 1gca 58 :KGVKALAINL T0375 83 :YTVFQTTGSVPIATVIINEAS 1gca 83 :QNVPVVFFNKEPSRKALDSYD T0375 107 :TILYYD 1gca 104 :KAYYVG T0375 181 :FGYGDVVFVSKDVAKHLGFQSAEEALRG 1gca 171 :IQTEQLALDTAMWDTAQAKDKMDAWLSG T0375 211 :GRVRKGAVLVCAW 1gca 199 :PNANKIEVVIANN T0375 232 :GPDGKL 1gca 215 :AMGAVE T0375 238 :LH 1gca 233 :FG T0375 242 :AF 1gca 237 :AL T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQGRSVQEA 1gca 247 :SGAMAGTVLNDANNQAKATFDLAKNLAEGKGA Number of specific fragments extracted= 13 number of extra gaps= 1 total=2167 Number of alignments=177 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Warning: unaligning (T0375)S240 because of BadResidue code BAD_PEPTIDE in next template residue (1gca)D236 Warning: unaligning (T0375)D241 because of BadResidue code BAD_PEPTIDE at template residue (1gca)D236 T0375 9 :LVVLDVI 1gca 36 :LLMNDSQ T0375 52 :G 1gca 43 :N T0375 53 :APCAFMGSMAP 1gca 47 :KQNDQIDVLLA T0375 65 :HVADFVLDDLR 1gca 58 :KGVKALAINLV T0375 83 :YTVFQTTGSVPIATVIINEAS 1gca 83 :QNVPVVFFNKEPSRKALDSYD T0375 104 :GSRTILYYDR 1gca 120 :GDLIAKHWQA T0375 181 :FGYGDVVFVSKDVAKHLGFQSAEEALRG 1gca 171 :IQTEQLALDTAMWDTAQAKDKMDAWLSG T0375 211 :GRVRKGAVLVCAW 1gca 199 :PNANKIEVVIANN T0375 232 :GPDGKLL 1gca 215 :AMGAVEA T0375 239 :H 1gca 234 :G T0375 242 :AF 1gca 237 :AL T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQGRSVQEA 1gca 247 :SGAMAGTVLNDANNQAKATFDLAKNLAEGKGA Number of specific fragments extracted= 12 number of extra gaps= 1 total=2179 Number of alignments=178 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Warning: unaligning (T0375)W223 because of BadResidue code BAD_PEPTIDE in next template residue (1gca)D236 Warning: unaligning (T0375)A224 because of BadResidue code BAD_PEPTIDE at template residue (1gca)D236 Warning: unaligning (T0375)G294 because last residue in template chain is (1gca)K309 T0375 4 :ILCVGLVV 1gca 2 :DTRIGVTI T0375 12 :LDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVP 1gca 18 :SVVRKAIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL T0375 94 :IATVIINEASGSRTIL 1gca 105 :AYYVGTDSKESGVIQG T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQ 1gca 122 :LIAKHWQANQGWDLNKDGKIQYVLLKGEPGHPDAEARTTYVVKELNDKGIQTE T0375 163 :KIRVSVEVEKPREELFQLFG 1gca 178 :LDTAMWDTAQAKDKMDAWLS T0375 183 :YGD 1gca 200 :NAN T0375 186 :VVFVSKDVAKHLGFQSAEEALR 1gca 206 :VVIANNDAMAMGAVEALKAHNK T0375 216 :GAVLVCA 1gca 228 :SSIPVFG T0375 225 :EE 1gca 237 :AL T0375 227 :GADALGPDGKLLHSDAFPPPRVVDTL 1gca 240 :EALALVKSGAMAGTVLNDANNQAKAT T0375 260 :ASVIFSLSQGRSV 1gca 266 :FDLAKNLAEGKGA T0375 273 :QEALRFGCQVAGKKCGLQGFD 1gca 288 :NKIVRVPYVGVDKDNLSEFTQ Number of specific fragments extracted= 12 number of extra gaps= 1 total=2191 Number of alignments=179 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Warning: unaligning (T0375)W223 because of BadResidue code BAD_PEPTIDE at template residue (1gca)D236 T0375 4 :ILCVGLVVLD 1gca 2 :DTRIGVTIYK T0375 15 :ISLVDKY 1gca 21 :RKAIEKD T0375 22 :PKEDSEIRCLSQRWQRGGNA 1gca 43 :NDQSKQNDQIDVLLAKGVKA T0375 42 :SNSCTILSLLGAPCAFMGSMAPGHV 1gca 74 :GTVIEKARGQNVPVVFFNKEPSRKA T0375 67 :ADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1gca 105 :AYYVGTDSKESGVIQGDLIAKHWQANQGWDL T0375 101 :EASGSRTILYYDRSLPDV 1gca 136 :NKDGKIQYVLLKGEPGHP T0375 142 :SEQV 1gca 154 :DAEA T0375 146 :KMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFG 1gca 161 :YVVKELNDKGIQTEQLALDTAMWDTAQAKDKMDAWLS T0375 183 :YGD 1gca 200 :NAN T0375 186 :VVFVSKDVAKHLGFQSAEEALR 1gca 206 :VVIANNDAMAMGAVEALKAHNK T0375 216 :GAVLVCA 1gca 228 :SSIPVFG T0375 224 :AE 1gca 237 :AL T0375 226 :EGADALGP 1gca 240 :EALALVKS T0375 235 :GKLLHSDAFPPPRVVDTL 1gca 248 :GAMAGTVLNDANNQAKAT T0375 260 :ASVIFSLSQGRSV 1gca 266 :FDLAKNLAEGKGA T0375 273 :QEALRFGCQVAGKK 1gca 288 :NKIVRVPYVGVDKD T0375 288 :GLQGFD 1gca 302 :NLSEFT Number of specific fragments extracted= 17 number of extra gaps= 1 total=2208 Number of alignments=180 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 51 :LGAPCAFMGSMAPGHV 1gca 83 :QNVPVVFFNKEPSRKA T0375 67 :ADFVLDD 1gca 105 :AYYVGTD Number of specific fragments extracted= 2 number of extra gaps= 0 total=2210 Number of alignments=181 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 148 :LQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFG 1gca 163 :VKELNDKGIQTEQLALDTAMWDTAQAKDKMDAWLS T0375 183 :YGD 1gca 200 :NAN T0375 186 :VVFVSKDVAKHLGFQSAEEALR 1gca 206 :VVIANNDAMAMGAVEALKAHNK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2213 Number of alignments=182 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Warning: unaligning (T0375)A222 because of BadResidue code BAD_PEPTIDE in next template residue (1gca)D236 Warning: unaligning (T0375)W223 because of BadResidue code BAD_PEPTIDE at template residue (1gca)D236 T0375 1 :GS 1gca 1 :AD T0375 5 :LCVGLVVLDV 1gca 3 :TRIGVTIYKY T0375 15 :ISLVDKYPKEDSEIRCLSQRWQRG 1gca 36 :LLMNDSQNDQSKQNDQIDVLLAKG T0375 43 :NSCTILSLLGAP 1gca 60 :VKALAINLVDPA T0375 55 :CAFMGSMAPGHVADFVLD 1gca 74 :GTVIEKARGQNVPVVFFN T0375 73 :DLRRYSVDLRYTVFQTTGSVPIATVIINEA 1gca 98 :ALDSYDKAYYVGTDSKESGVIQGDLIAKHW T0375 103 :SGSRTI 1gca 136 :NKDGKI T0375 109 :LYYDRSLPDVSATDFEKVDLTQFK 1gca 144 :VLLKGEPGHPDAEARTTYVVKELN T0375 153 :AHNTRQPPEQKIRVSVEVEKPREELFQLF 1gca 168 :DKGIQTEQLALDTAMWDTAQAKDKMDAWL T0375 182 :GYGDVVFVSKDVAKHLGFQSAEEALR 1gca 202 :NKIEVVIANNDAMAMGAVEALKAHNK T0375 215 :KGAVLVC 1gca 228 :SSIPVFG T0375 224 :AEEGADALGPDGKLLHSDAFPPPRVVDTL 1gca 237 :ALPEALALVKSGAMAGTVLNDANNQAKAT T0375 260 :ASVIFSLSQGRSV 1gca 266 :FDLAKNLAEGKGA T0375 273 :QEALRFGCQVAGK 1gca 288 :NKIVRVPYVGVDK T0375 290 :QGFDGIV 1gca 301 :DNLSEFT Number of specific fragments extracted= 15 number of extra gaps= 1 total=2228 Number of alignments=183 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Warning: unaligning (T0375)A222 because of BadResidue code BAD_PEPTIDE in next template residue (1gca)D236 Warning: unaligning (T0375)W223 because of BadResidue code BAD_PEPTIDE at template residue (1gca)D236 T0375 1 :GS 1gca 1 :AD T0375 5 :LCVGLVVLDV 1gca 3 :TRIGVTIYKY T0375 15 :IS 1gca 21 :RK T0375 17 :LVDKYPKEDSEIRCLSQRWQRGGN 1gca 38 :MNDSQNDQSKQNDQIDVLLAKGVK T0375 41 :ASNS 1gca 69 :DPAA T0375 45 :CTILSLL 1gca 74 :GTVIEKA T0375 52 :GAPCAFMGSMAP 1gca 84 :NVPVVFFNKEPS T0375 71 :LDDLRRYSVDLRYTVFQTTGSVPIATVIINEA 1gca 96 :RKALDSYDKAYYVGTDSKESGVIQGDLIAKHW T0375 103 :SGSRTI 1gca 136 :NKDGKI T0375 109 :LYYDRSLPDVSATDFEKVDLTQFK 1gca 144 :VLLKGEPGHPDAEARTTYVVKELN T0375 153 :AHNTRQPPEQKIRVSVEVEKPREELFQLF 1gca 168 :DKGIQTEQLALDTAMWDTAQAKDKMDAWL T0375 182 :GYGDVVFVSKDVAKHLGFQSAEEA 1gca 202 :NKIEVVIANNDAMAMGAVEALKAH T0375 208 :G 1gca 226 :N T0375 215 :KGAVLVC 1gca 228 :SSIPVFG T0375 224 :AEEGADALGPDGKLLHSDAFPPPRVVDTL 1gca 237 :ALPEALALVKSGAMAGTVLNDANNQAKAT T0375 260 :ASVIFSLSQGRSV 1gca 266 :FDLAKNLAEGKGA T0375 273 :QEALRFGCQVAGKK 1gca 288 :NKIVRVPYVGVDKD Number of specific fragments extracted= 17 number of extra gaps= 1 total=2245 Number of alignments=184 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 175 :EELFQLF 1gca 121 :DLIAKHW T0375 182 :GYGDV 1gca 137 :KDGKI T0375 187 :VFVS 1gca 144 :VLLK T0375 191 :KDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGA 1gca 151 :GHPDAEARTTYVVKELNDKGIQTEQLALDTAMWDTAQA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2249 Number of alignments=185 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 104 :GSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHN 1gca 33 :DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQN T0375 156 :TRQPPEQKIRVSVEVEKP 1gca 98 :ALDSYDKAYYVGTDSKES T0375 174 :REELFQLF 1gca 120 :GDLIAKHW T0375 182 :GYGDV 1gca 137 :KDGKI T0375 187 :VFVSKD 1gca 144 :VLLKGE T0375 193 :VAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGP 1gca 153 :PDAEARTTYVVKELNDKGIQTEQLALDTAMWDTAQAKDKMD T0375 236 :KLLHSDAFPPPRVV 1gca 194 :AWLSGPNANKIEVV T0375 252 :LGAGDTFNASVI 1gca 208 :IANNDAMAMGAV Number of specific fragments extracted= 8 number of extra gaps= 0 total=2257 Number of alignments=186 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Warning: unaligning (T0375)A222 because of BadResidue code BAD_PEPTIDE in next template residue (1gca)D236 Warning: unaligning (T0375)W223 because of BadResidue code BAD_PEPTIDE at template residue (1gca)D236 T0375 1 :GSQILCVGLVVL 1gca 1 :ADTRIGVTIYKY T0375 13 :DVISLVDKYPKEDSEIRCLSQ 1gca 19 :VVRKAIEKDGKSAPDVQLLMN T0375 36 :QRGGNASNSCTIL 1gca 40 :DSQNDQSKQNDQI T0375 49 :SLLGAPCAFMGSMAPGHVADFVLDDLR 1gca 72 :AAGTVIEKARGQNVPVVFFNKEPSRKA T0375 76 :RYSVDLRYTVFQTTGSVPIATVIINEAS 1gca 101 :SYDKAYYVGTDSKESGVIQGDLIAKHWQ T0375 104 :GSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVK 1gca 139 :GKIQYVLLKGEPGHPDAEARTTYVVKELNDKGIQTEQLALDTA T0375 167 :SVEVEKPREELFQLFGY 1gca 182 :MWDTAQAKDKMDAWLSG T0375 184 :GDVVFVSKDVAKHLGFQSAEEALR 1gca 204 :IEVVIANNDAMAMGAVEALKAHNK T0375 215 :KGAVLVC 1gca 228 :SSIPVFG T0375 224 :AEEGADALGPDGKLLHSDAFPPP 1gca 237 :ALPEALALVKSGAMAGTVLNDAN T0375 247 :RVVDTLGAGDTFNASVIFSLSQ 1gca 267 :DLAKNLAEGKGAADGTSWKIEN T0375 286 :KCGLQGFDGIV 1gca 289 :KIVRVPYVGVD Number of specific fragments extracted= 12 number of extra gaps= 1 total=2269 Number of alignments=187 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Warning: unaligning (T0375)A222 because of BadResidue code BAD_PEPTIDE in next template residue (1gca)D236 Warning: unaligning (T0375)W223 because of BadResidue code BAD_PEPTIDE at template residue (1gca)D236 T0375 1 :GSQILCVGLVVL 1gca 1 :ADTRIGVTIYKY T0375 13 :DVISLVDKYPKEDSEIRCLSQ 1gca 19 :VVRKAIEKDGKSAPDVQLLMN T0375 36 :QRGGNASNSCTILSLLGA 1gca 40 :DSQNDQSKQNDQIDVLLA T0375 54 :PCAFMGSMAPGHVADFVLDDLR 1gca 77 :IEKARGQNVPVVFFNKEPSRKA T0375 76 :RYSVDLRYTVFQTTGSVPIATVIINEAS 1gca 101 :SYDKAYYVGTDSKESGVIQGDLIAKHWQ T0375 104 :GSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVK 1gca 139 :GKIQYVLLKGEPGHPDAEARTTYVVKELNDKGIQTEQLALDTA T0375 169 :EVEKPREELFQL 1gca 187 :QAKDKMDAWLSG T0375 181 :FGYGDVVFVSKDVAKHLGFQSAEEALR 1gca 201 :ANKIEVVIANNDAMAMGAVEALKAHNK T0375 215 :KGAVLVC 1gca 228 :SSIPVFG T0375 224 :AEEGADALGPDGKLLHSDAFPPP 1gca 237 :ALPEALALVKSGAMAGTVLNDAN T0375 247 :RVVDTLGAGDTFNASVIFSLS 1gca 267 :DLAKNLAEGKGAADGTSWKIE T0375 286 :KCGLQGFDGIV 1gca 289 :KIVRVPYVGVD Number of specific fragments extracted= 12 number of extra gaps= 1 total=2281 Number of alignments=188 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Warning: unaligning (T0375)K191 because of BadResidue code BAD_PEPTIDE in next template residue (1gca)D236 Warning: unaligning (T0375)D192 because of BadResidue code BAD_PEPTIDE at template residue (1gca)D236 T0375 176 :ELFQLFGYGDVVFVS 1gca 220 :EALKAHNKSSIPVFG T0375 193 :VAKHLGFQSAEEA 1gca 237 :ALPEALALVKSGA T0375 209 :LYGRVRKGAVLVCAWAEEGADALGPDGKLLH 1gca 250 :MAGTVLNDANNQAKATFDLAKNLAEGKGAAD T0375 240 :SDAFPPPRVVD 1gca 289 :KIVRVPYVGVD Number of specific fragments extracted= 4 number of extra gaps= 1 total=2285 Number of alignments=189 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2285 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 213 :VRKGAVLVCAWAEEGADALGPDGKL 1gca 117 :VIQGDLIAKHWQANQGWDLNKDGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=2286 Number of alignments=190 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 214 :RKGAVLVCAWAEEGADALGPDGKL 1gca 118 :IQGDLIAKHWQANQGWDLNKDGKI Number of specific fragments extracted= 1 number of extra gaps= 0 total=2287 Number of alignments=191 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Warning: unaligning (T0375)L51 because first residue in template chain is (1gca)A1 T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 1gca 2 :DTRIGVTIYKYDDNFMSVVRKAIEKDGKSAPDVQLLMN T0375 103 :SGSR 1gca 40 :DSQN T0375 115 :LPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQ 1gca 44 :DQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1gca 92 :KEPSRKALDSYDKAYYVGTDSKESGVI T0375 198 :GF 1gca 120 :GD T0375 200 :QSAEEALRGLYGRVRKGAVLVCA 1gca 125 :KHWQANQGWDLNKDGKIQYVLLK T0375 223 :WAEEGADALGP 1gca 150 :PGHPDAEARTT T0375 234 :DGKLLHSDAF 1gca 287 :ENKIVRVPYV T0375 291 :GFD 1gca 297 :GVD T0375 294 :GI 1gca 302 :NL Number of specific fragments extracted= 10 number of extra gaps= 0 total=2297 Number of alignments=192 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 54 :PCAFMGSMAPGHVADFVLDDLRRYSV 1gca 4 :RIGVTIYKYDDNFMSVVRKAIEKDGK T0375 90 :GSVPIATVIINE 1gca 30 :SAPDVQLLMNDS T0375 103 :SGSRTI 1gca 42 :QNDQSK T0375 119 :SATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQK 1gca 48 :QNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK T0375 171 :EK 1gca 93 :EP T0375 174 :REELFQLFGYGDVVFVSKDVAKHL 1gca 95 :SRKALDSYDKAYYVGTDSKESGVI T0375 198 :GF 1gca 120 :GD T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAE 1gca 126 :HWQANQGWDLNKDGKIQYVLLKGEP T0375 226 :EGADAL 1gca 153 :PDAEAR T0375 270 :RSVQEALRFGCQVAGKKCGL 1gca 266 :FDLAKNLAEGKGAADGTSWK Number of specific fragments extracted= 10 number of extra gaps= 0 total=2307 Number of alignments=193 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 1 :GS 1gca 1 :AD T0375 54 :PCAFMGSMA 1gca 3 :TRIGVTIYK T0375 63 :PGHVADFVLDDLRRYS 1gca 13 :DDNFMSVVRKAIEKDG T0375 80 :DLRYTVFQT 1gca 33 :DVQLLMNDS T0375 103 :SGS 1gca 42 :QND T0375 116 :PDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQK 1gca 45 :QSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK T0375 171 :EKPREEL 1gca 93 :EPSRKAL T0375 179 :QLFGYGDVVFVSKDVAKHL 1gca 100 :DSYDKAYYVGTDSKESGVI T0375 198 :G 1gca 120 :G T0375 203 :EEALRGLYGR 1gca 121 :DLIAKHWQAN T0375 216 :GAVLVCAWAEE 1gca 141 :IQYVLLKGEPG T0375 234 :DGK 1gca 197 :SGP T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQG 1gca 200 :NANKIEVVIANNDAMAMGAVEALKAH T0375 270 :RSVQEALRFGCQVAGKKCGLQGFDGI 1gca 256 :NDANNQAKATFDLAKNLAEGKGAADG Number of specific fragments extracted= 14 number of extra gaps= 0 total=2321 Number of alignments=194 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 1 :G 1gca 1 :A T0375 54 :PCAFMGSMA 1gca 2 :DTRIGVTIY T0375 63 :PGHVADFVLDDLRRY 1gca 13 :DDNFMSVVRKAIEKD T0375 80 :DLRYTVFQT 1gca 33 :DVQLLMNDS T0375 103 :SGS 1gca 42 :QND T0375 120 :ATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQK 1gca 49 :NDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHL 1gca 93 :EPSRKALDSYDKAYYVGTDSKESGVI T0375 203 :EEALRGLYGRVRK 1gca 120 :GDLIAKHWQANQG T0375 216 :GAVLVCAWAEE 1gca 141 :IQYVLLKGEPG T0375 245 :PPRVVDTLGAGDTFNASVIFSL 1gca 201 :ANKIEVVIANNDAMAMGAVEAL T0375 267 :SQG 1gca 224 :AHN T0375 270 :RSVQEALRFGCQVAGKKCGLQGFD 1gca 256 :NDANNQAKATFDLAKNLAEGKGAA T0375 295 :I 1gca 281 :G Number of specific fragments extracted= 13 number of extra gaps= 0 total=2334 Number of alignments=195 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 121 :TDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQ 1gca 50 :DQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1gca 92 :KEPSRKALDSYDKAYYVGTDSKESGVI T0375 198 :GF 1gca 120 :GD T0375 200 :QSAEEALRGLYGRVRKGAVLVCAWAE 1gca 125 :KHWQANQGWDLNKDGKIQYVLLKGEP Number of specific fragments extracted= 4 number of extra gaps= 0 total=2338 Number of alignments=196 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 96 :TVIINE 1gca 36 :LLMNDS T0375 103 :S 1gca 42 :Q T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQK 1gca 43 :NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK T0375 171 :EKP 1gca 93 :EPS T0375 175 :EELFQLFGYGDVVFVSKDVAKHL 1gca 96 :RKALDSYDKAYYVGTDSKESGVI T0375 198 :GF 1gca 120 :GD T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAE 1gca 126 :HWQANQGWDLNKDGKIQYVLLKGEP Number of specific fragments extracted= 7 number of extra gaps= 0 total=2345 Number of alignments=197 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 55 :CAFMGSMA 1gca 4 :RIGVTIYK T0375 63 :PGHVADFVLDDLRRYS 1gca 13 :DDNFMSVVRKAIEKDG T0375 80 :DLRYTVFQT 1gca 33 :DVQLLMNDS T0375 103 :SGS 1gca 42 :QND T0375 116 :PDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQK 1gca 45 :QSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK T0375 171 :EKPREEL 1gca 93 :EPSRKAL T0375 179 :QLFGYGDVVFVSKDVAKHL 1gca 100 :DSYDKAYYVGTDSKESGVI T0375 198 :G 1gca 120 :G T0375 203 :EEALRGLYGR 1gca 121 :DLIAKHWQAN T0375 216 :GAVLVCAWAEE 1gca 141 :IQYVLLKGEPG T0375 234 :DGK 1gca 197 :SGP T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQG 1gca 200 :NANKIEVVIANNDAMAMGAVEALKAH T0375 270 :RSVQEALRFGCQVAGKKCGLQGFDGI 1gca 256 :NDANNQAKATFDLAKNLAEGKGAADG Number of specific fragments extracted= 13 number of extra gaps= 0 total=2358 Number of alignments=198 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 55 :CAFMGSMA 1gca 3 :TRIGVTIY T0375 63 :PGHVADFVLDDLRRY 1gca 13 :DDNFMSVVRKAIEKD T0375 80 :DLRYTVFQT 1gca 33 :DVQLLMNDS T0375 103 :SGS 1gca 42 :QND T0375 120 :ATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQK 1gca 49 :NDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHL 1gca 93 :EPSRKALDSYDKAYYVGTDSKESGVI T0375 203 :EEALRGLYGRVRK 1gca 120 :GDLIAKHWQANQG T0375 216 :GAVLVCAWAEE 1gca 141 :IQYVLLKGEPG T0375 245 :PPRVVDTLGAGDTFNASVIFSL 1gca 201 :ANKIEVVIANNDAMAMGAVEAL T0375 267 :SQG 1gca 224 :AHN T0375 270 :RSVQEALRFGCQVAGKKCGLQGFD 1gca 256 :NDANNQAKATFDLAKNLAEGKGAA T0375 294 :G 1gca 281 :G Number of specific fragments extracted= 12 number of extra gaps= 0 total=2370 Number of alignments=199 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Warning: unaligning (T0375)L51 because first residue in template chain is (1gca)A1 Warning: unaligning (T0375)F278 because last residue in template chain is (1gca)K309 T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 1gca 2 :DTRIGVTIYKYDDNFMSVVRKAIEKDGKSAPDVQLLMN T0375 101 :EASGSRTILY 1gca 40 :DSQNDQSKQN T0375 121 :TDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQ 1gca 50 :DQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1gca 92 :KEPSRKALDSYDKAYYVGTDSKESGVI T0375 198 :G 1gca 120 :G T0375 207 :RGLYGRVRKGA 1gca 121 :DLIAKHWQANQ T0375 218 :VLVCAWAEEGADALGP 1gca 133 :WDLNKDGKIQYVLLKG T0375 234 :DGKLLHSDAF 1gca 287 :ENKIVRVPYV T0375 245 :PPR 1gca 297 :GVD T0375 269 :GRSVQEALR 1gca 300 :KDNLSEFTQ Number of specific fragments extracted= 10 number of extra gaps= 0 total=2380 Number of alignments=200 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 1 :GSQ 1gca 2 :DTR T0375 55 :CAFMGSMAPGHVADFVLDDLRRYSVDL 1gca 5 :IGVTIYKYDDNFMSVVRKAIEKDGKSA T0375 92 :VPIATVII 1gca 32 :PDVQLLMN T0375 101 :EASGSRT 1gca 40 :DSQNDQS T0375 118 :VSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQK 1gca 47 :KQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK T0375 171 :EKPREEL 1gca 93 :EPSRKAL T0375 179 :QLFGYGDVVFVSKDVAKHL 1gca 100 :DSYDKAYYVGTDSKESGVI T0375 198 :GFQ 1gca 120 :GDL T0375 211 :GRVRKGA 1gca 125 :KHWQANQ T0375 218 :VLVCAWAEEGADALGP 1gca 133 :WDLNKDGKIQYVLLKG T0375 235 :GKLLHSDAF 1gca 288 :NKIVRVPYV T0375 245 :PPRVV 1gca 297 :GVDKD Number of specific fragments extracted= 12 number of extra gaps= 0 total=2392 Number of alignments=201 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 1 :GS 1gca 1 :AD T0375 3 :QIL 1gca 4 :RIG T0375 57 :FMGSMAPGHVADFVLDDLRRYS 1gca 7 :VTIYKYDDNFMSVVRKAIEKDG T0375 81 :LRYTVFQ 1gca 34 :VQLLMND T0375 102 :ASG 1gca 41 :SQN T0375 115 :LPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQK 1gca 44 :DQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK T0375 171 :EKPREELF 1gca 93 :EPSRKALD T0375 180 :LFGYGDVVFVSKDVAKHL 1gca 101 :SYDKAYYVGTDSKESGVI T0375 198 :G 1gca 120 :G T0375 204 :EA 1gca 121 :DL T0375 209 :LYGRVR 1gca 123 :IAKHWQ T0375 216 :GA 1gca 140 :KI T0375 218 :VLVCAWAE 1gca 143 :YVLLKGEP T0375 233 :P 1gca 151 :G T0375 234 :DG 1gca 197 :SG T0375 243 :FPPPRVVDTLGAGDTFNASVIFSL 1gca 199 :PNANKIEVVIANNDAMAMGAVEAL T0375 271 :SVQEALRFGCQVAGKKCGLQGFDGIV 1gca 257 :DANNQAKATFDLAKNLAEGKGAADGT Number of specific fragments extracted= 17 number of extra gaps= 0 total=2409 Number of alignments=202 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 1 :GS 1gca 1 :AD T0375 3 :QILCV 1gca 4 :RIGVT T0375 60 :SMA 1gca 9 :IYK T0375 63 :PGHVADFVLDDLRRY 1gca 13 :DDNFMSVVRKAIEKD T0375 78 :S 1gca 33 :D T0375 81 :LRYTVFQTT 1gca 34 :VQLLMNDSQ T0375 104 :GS 1gca 43 :ND T0375 120 :ATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQ 1gca 49 :NDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN T0375 171 :EKPREELFQLF 1gca 113 :KESGVIQGDLI T0375 184 :GDVVFVS 1gca 141 :IQYVLLK T0375 191 :KDVAKHLGFQ 1gca 163 :VKELNDKGIQ T0375 201 :SAEEALRGLYGRVRK 1gca 184 :DTAQAKDKMDAWLSG T0375 216 :GAVLVCAWA 1gca 203 :KIEVVIANN T0375 256 :DTFNASVIFSL 1gca 212 :DAMAMGAVEAL T0375 267 :SQGR 1gca 246 :KSGA T0375 271 :SVQEALRFGCQVAGKKCGLQGFDGIV 1gca 257 :DANNQAKATFDLAKNLAEGKGAADGT Number of specific fragments extracted= 16 number of extra gaps= 0 total=2425 Number of alignments=203 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 121 :TDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPP 1gca 50 :DQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2426 Number of alignments=204 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 92 :VPIATVII 1gca 32 :PDVQLLMN T0375 101 :EASGS 1gca 40 :DSQND T0375 116 :PDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQK 1gca 45 :QSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK T0375 171 :EKPREEL 1gca 93 :EPSRKAL T0375 179 :QLFGYGDVVFVSKDVAKHL 1gca 100 :DSYDKAYYVGTDSKESGVI T0375 198 :GFQ 1gca 120 :GDL T0375 211 :GRVRKGA 1gca 125 :KHWQANQ T0375 218 :VLVCAWAEEGADALGPD 1gca 133 :WDLNKDGKIQYVLLKGE Number of specific fragments extracted= 8 number of extra gaps= 0 total=2434 Number of alignments=205 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 54 :PCAFMGSMAPGHVADFVLDDLRRYS 1gca 4 :RIGVTIYKYDDNFMSVVRKAIEKDG T0375 81 :LRYTVFQ 1gca 34 :VQLLMND T0375 102 :ASG 1gca 41 :SQN T0375 115 :LPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQK 1gca 44 :DQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK T0375 171 :EKPREELF 1gca 93 :EPSRKALD T0375 180 :LFGYGDVVFVSKDVAKHL 1gca 101 :SYDKAYYVGTDSKESGVI T0375 198 :G 1gca 120 :G T0375 204 :EA 1gca 121 :DL T0375 209 :LYGRVR 1gca 123 :IAKHWQ T0375 216 :GA 1gca 140 :KI T0375 218 :VLVCAWAE 1gca 143 :YVLLKGEP T0375 233 :P 1gca 151 :G T0375 234 :DG 1gca 197 :SG T0375 243 :FPPPRVVDTLGAGDTFNASVIFSL 1gca 199 :PNANKIEVVIANNDAMAMGAVEAL T0375 271 :SVQEALRFGCQVAGKKCGLQGFDGI 1gca 257 :DANNQAKATFDLAKNLAEGKGAADG Number of specific fragments extracted= 15 number of extra gaps= 0 total=2449 Number of alignments=206 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 54 :PCAFMGSMAPGHVADFVLDDLRRY 1gca 4 :RIGVTIYKYDDNFMSVVRKAIEKD T0375 78 :S 1gca 33 :D T0375 81 :LRYTVFQTT 1gca 34 :VQLLMNDSQ T0375 104 :GS 1gca 43 :ND T0375 120 :ATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQ 1gca 49 :NDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN T0375 171 :EKPREELFQLF 1gca 113 :KESGVIQGDLI T0375 184 :GDVVFVS 1gca 141 :IQYVLLK T0375 191 :KDVAKHLGFQ 1gca 163 :VKELNDKGIQ T0375 201 :SAEEALRGLYGRVRK 1gca 184 :DTAQAKDKMDAWLSG T0375 216 :GAVLVCAWA 1gca 203 :KIEVVIANN T0375 256 :DTFNASVIFSL 1gca 212 :DAMAMGAVEAL T0375 267 :SQGR 1gca 246 :KSGA T0375 271 :SVQEALRFGCQVAGKKCGLQGFDGI 1gca 257 :DANNQAKATFDLAKNLAEGKGAADG Number of specific fragments extracted= 13 number of extra gaps= 0 total=2462 Number of alignments=207 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Warning: unaligning (T0375)K20 because first residue in template chain is (1gca)A1 Warning: unaligning (T0375)S167 because of BadResidue code BAD_PEPTIDE in next template residue (1gca)D236 Warning: unaligning (T0375)E175 because of BadResidue code BAD_PEPTIDE at template residue (1gca)D236 Warning: unaligning (T0375)F278 because last residue in template chain is (1gca)K309 T0375 21 :YPKEDSEIRCLSQRWQ 1gca 2 :DTRIGVTIYKYDDNFM T0375 53 :APCAFMGSMAPGH 1gca 139 :GKIQYVLLKGEPG T0375 85 :VFQTTGSVPIATVIINEASGSRTILYYDR 1gca 152 :HPDAEARTTYVVKELNDKGIQTEQLALDT T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRV 1gca 182 :MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFG T0375 176 :ELFQLFGYGD 1gca 237 :ALPEALALVK T0375 194 :AKHLGFQ 1gca 247 :SGAMAGT T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1gca 255 :LNDANNQAKATFDLAKNLAEGKGAADGTSWKIENK T0375 238 :LHSDAFPPPR 1gca 290 :IVRVPYVGVD T0375 269 :GRSVQEALR 1gca 300 :KDNLSEFTQ Number of specific fragments extracted= 9 number of extra gaps= 1 total=2471 Number of alignments=208 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Warning: unaligning (T0375)K20 because first residue in template chain is (1gca)A1 Warning: unaligning (T0375)P173 because of BadResidue code BAD_PEPTIDE in next template residue (1gca)D236 Warning: unaligning (T0375)E175 because of BadResidue code BAD_PEPTIDE at template residue (1gca)D236 Warning: unaligning (T0375)G294 because last residue in template chain is (1gca)K309 T0375 21 :YPKEDSEIRCLSQRWQ 1gca 2 :DTRIGVTIYKYDDNFM T0375 53 :APCAFMGSMA 1gca 139 :GKIQYVLLKG T0375 82 :RYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDF 1gca 149 :EPGHPDAEARTTYVVKELNDKGIQTEQLALDTAMWDTAQAKD T0375 124 :EKVDLTQFKWIHIEGRNASE 1gca 192 :MDAWLSGPNANKIEVVIANN T0375 150 :RIDAHNTRQPPEQKIRVSVEVEK 1gca 212 :DAMAMGAVEALKAHNKSSIPVFG T0375 176 :ELFQLFGYG 1gca 237 :ALPEALALV T0375 189 :VSK 1gca 246 :KSG T0375 196 :HLGFQ 1gca 249 :AMAGT T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1gca 255 :LNDANNQAKATFDLAKNLAEGKGAADGTSWKIENK T0375 238 :LHSDAFPPPRVV 1gca 290 :IVRVPYVGVDKD T0375 271 :SVQEAL 1gca 302 :NLSEFT T0375 293 :D 1gca 308 :Q Number of specific fragments extracted= 12 number of extra gaps= 1 total=2483 Number of alignments=209 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Warning: unaligning (T0375)E24 because first residue in template chain is (1gca)A1 T0375 25 :D 1gca 2 :D T0375 53 :APCAFMGSMAPGHVADFVLDDLRRYS 1gca 3 :TRIGVTIYKYDDNFMSVVRKAIEKDG T0375 101 :EASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNA 1gca 30 :SAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVS 1gca 71 :AAAGTVIEKARGQNVPVVFFNKEP T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1gca 95 :SRKALDSYDKAYYVGTDSKESGVIQGD T0375 207 :RGLYGRVR 1gca 123 :IAKHWQAN T0375 215 :KGAVLVCAWAEE 1gca 140 :KIQYVLLKGEPG T0375 244 :PPPRVVDT 1gca 202 :NKIEVVIA T0375 254 :AGDTFNASVIFSL 1gca 210 :NNDAMAMGAVEAL T0375 271 :SVQEALRFGCQVAGKKCGLQGFDG 1gca 257 :DANNQAKATFDLAKNLAEGKGAAD Number of specific fragments extracted= 10 number of extra gaps= 0 total=2493 Number of alignments=210 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set Warning: unaligning (T0375)E24 because first residue in template chain is (1gca)A1 T0375 25 :D 1gca 2 :D T0375 53 :APCAFMGSMAPGHVADFVLDDLRRY 1gca 3 :TRIGVTIYKYDDNFMSVVRKAIEKD T0375 78 :SVDLRYTVFQTT 1gca 33 :DVQLLMNDSQND T0375 116 :PDVSATDFEKVDLTQFKWIHIEGRNA 1gca 45 :QSKQNDQIDVLLAKGVKALAINLVDP T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVS 1gca 71 :AAAGTVIEKARGQNVPVVFFNKEP T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1gca 95 :SRKALDSYDKAYYVGTDSKESGVIQGD T0375 215 :KGAVLVCAWAEE 1gca 140 :KIQYVLLKGEPG T0375 235 :G 1gca 152 :H T0375 244 :PPPRVVDTL 1gca 202 :NKIEVVIAN T0375 255 :GDTFNASVIFSL 1gca 211 :NDAMAMGAVEAL T0375 270 :RSVQEALRFGCQVAGKKCGLQGFD 1gca 256 :NDANNQAKATFDLAKNLAEGKGAA Number of specific fragments extracted= 11 number of extra gaps= 0 total=2504 Number of alignments=211 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 81 :LRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQ 1gca 8 :TIYKYDDNFMSVVRKAIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2505 Number of alignments=212 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 95 :ATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 1gca 22 :KAIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1gca 71 :AAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGVIQGD Number of specific fragments extracted= 2 number of extra gaps= 0 total=2507 Number of alignments=213 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 54 :PCAFMGSMAPGHVADFVLDDLRRYS 1gca 4 :RIGVTIYKYDDNFMSVVRKAIEKDG T0375 101 :EASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNA 1gca 30 :SAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVS 1gca 71 :AAAGTVIEKARGQNVPVVFFNKEP T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1gca 95 :SRKALDSYDKAYYVGTDSKESGVIQGD T0375 207 :RGLYGRVR 1gca 123 :IAKHWQAN T0375 215 :KGAVLVCAWAEE 1gca 140 :KIQYVLLKGEPG Number of specific fragments extracted= 6 number of extra gaps= 0 total=2513 Number of alignments=214 # 1gca read from 1gca/merged-a2m # found chain 1gca in training set T0375 54 :PCAFMGSMAPGHVADFVLDDLRRY 1gca 4 :RIGVTIYKYDDNFMSVVRKAIEKD T0375 78 :SVDLRYTVFQTT 1gca 33 :DVQLLMNDSQND T0375 116 :PDVSATDFEKVDLTQFKWIHIEGRNA 1gca 45 :QSKQNDQIDVLLAKGVKALAINLVDP T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVS 1gca 71 :AAAGTVIEKARGQNVPVVFFNKEP T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1gca 95 :SRKALDSYDKAYYVGTDSKESGVIQGD T0375 215 :KGAVLVCAWAEE 1gca 140 :KIQYVLLKGEPG T0375 235 :G 1gca 152 :H T0375 244 :PPPRVVDTL 1gca 202 :NKIEVVIAN T0375 255 :GDTFNASVIFSL 1gca 211 :NDAMAMGAVEAL T0375 270 :RSVQEALRFGCQVAGKKCGLQGF 1gca 256 :NDANNQAKATFDLAKNLAEGKGA Number of specific fragments extracted= 10 number of extra gaps= 0 total=2523 Number of alignments=215 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2abqA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0375 read from 2abqA/merged-a2m # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 3 :QILCVGLVVLDVISLVDKYP 2abqA 2 :IYTVTLNPSIDYIVQVENFQ T0375 24 :EDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 22 :QGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQT 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEG T0375 91 :SVPIATVIIN 2abqA 86 :DTRINVKIKG T0375 104 :GSRTILYYDRSL 2abqA 96 :KQETELNGTAPL T0375 116 :PDVSATDFEKV 2abqA 109 :KKEHVQALLEQ T0375 127 :DLTQFKWIHIEGRNA 2abqA 122 :ELEKGDVLVLAGSVP T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEVE 2abqA 137 :QAMPQTIYRSMTQIAKERGAFVAVDTS T0375 173 :PREELFQLFGYGDVVFVS 2abqA 164 :GEALHEVLAAKPSFIKPN T0375 191 :KDVAKHLGF 2abqA 183 :HELSELVSK T0375 200 :QSAEEALRGLYGR 2abqA 197 :EDAIPHVQRLIGE T0375 215 :KGAVLVCAWAEEGADALGPDGK 2abqA 210 :GIESILVSFAGDGALFASAEGM T0375 238 :LHSDAFPPP 2abqA 232 :FHVNVPSGE T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 2abqA 241 :VRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDG T0375 295 :IV 2abqA 285 :FC Number of specific fragments extracted= 15 number of extra gaps= 0 total=2538 Number of alignments=216 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 3 :QILCVGLVVLDVISLVDKYP 2abqA 2 :IYTVTLNPSIDYIVQVENFQ T0375 24 :EDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 22 :QGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQ 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVE T0375 90 :GSVPIATVIIN 2abqA 85 :GDTRINVKIKG T0375 104 :GSRTILYYDRSL 2abqA 96 :KQETELNGTAPL T0375 116 :PDVSATDFEKV 2abqA 109 :KKEHVQALLEQ T0375 127 :DLTQFKWIHIEGRNASE 2abqA 122 :ELEKGDVLVLAGSVPQA T0375 144 :QVKMLQRI 2abqA 140 :PQTIYRSM T0375 156 :TRQPPEQKIRVSVEVE 2abqA 148 :TQIAKERGAFVAVDTS T0375 174 :REEL 2abqA 164 :GEAL T0375 178 :FQLFGYGDVVFVS 2abqA 169 :EVLAAKPSFIKPN T0375 191 :KDVAKHLGF 2abqA 183 :HELSELVSK T0375 200 :QSAEEALRGLYGR 2abqA 197 :EDAIPHVQRLIGE T0375 215 :KGAVLVCAWAEEGADALGPDGK 2abqA 210 :GIESILVSFAGDGALFASAEGM T0375 238 :LHSDAFPPP 2abqA 232 :FHVNVPSGE T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 2abqA 241 :VRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDG T0375 295 :IV 2abqA 285 :FC Number of specific fragments extracted= 17 number of extra gaps= 0 total=2555 Number of alignments=217 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 3 :QILCVGLVVLDVISLVDKYP 2abqA 2 :IYTVTLNPSIDYIVQVENFQ T0375 24 :EDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 22 :QGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQT 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEG T0375 91 :SVPIATVIIN 2abqA 86 :DTRINVKIKG T0375 104 :GSRTILYYDRSL 2abqA 96 :KQETELNGTAPL T0375 116 :PDVSATDFEKV 2abqA 109 :KKEHVQALLEQ T0375 127 :DLTQFKWIHIEGRNA 2abqA 122 :ELEKGDVLVLAGSVP T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEVE 2abqA 137 :QAMPQTIYRSMTQIAKERGAFVAVDTS T0375 173 :PREELFQLFGYGDVVFVS 2abqA 164 :GEALHEVLAAKPSFIKPN T0375 191 :KDVAKHLGF 2abqA 183 :HELSELVSK T0375 200 :QSAEEALRGLYGR 2abqA 197 :EDAIPHVQRLIGE T0375 215 :KGAVLVCAWAEEGADALGPDGK 2abqA 210 :GIESILVSFAGDGALFASAEGM T0375 238 :LHSDAFPPP 2abqA 232 :FHVNVPSGE T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 2abqA 241 :VRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDG Number of specific fragments extracted= 14 number of extra gaps= 0 total=2569 Number of alignments=218 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 4 :ILCVGLVVLDVISLVDKYP 2abqA 3 :YTVTLNPSIDYIVQVENFQ T0375 24 :EDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 22 :QGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQ 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVE T0375 90 :GSVPIATVIIN 2abqA 85 :GDTRINVKIKG T0375 104 :GSRTILYYDRSL 2abqA 96 :KQETELNGTAPL T0375 116 :PDVSATDFEKV 2abqA 109 :KKEHVQALLEQ T0375 127 :DLTQFKWIHIEGRNASE 2abqA 122 :ELEKGDVLVLAGSVPQA T0375 144 :QVKMLQRI 2abqA 140 :PQTIYRSM T0375 156 :TRQPPEQKIRVSVEVE 2abqA 148 :TQIAKERGAFVAVDTS T0375 174 :REEL 2abqA 164 :GEAL T0375 178 :FQLFGYGDVVFVS 2abqA 169 :EVLAAKPSFIKPN T0375 191 :KDVAKHLGF 2abqA 183 :HELSELVSK T0375 200 :QSAEEALRGLYGR 2abqA 197 :EDAIPHVQRLIGE T0375 215 :KGAVLVCAWAEEGADALGPDGK 2abqA 210 :GIESILVSFAGDGALFASAEGM T0375 238 :LHSDAFPPP 2abqA 232 :FHVNVPSGE T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 241 :VRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 16 number of extra gaps= 0 total=2585 Number of alignments=219 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 3 :QILCVGLVVLDVISLVDKYPK 2abqA 2 :IYTVTLNPSIDYIVQVENFQQ T0375 25 :DSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 23 :GVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYT 2abqA 61 :GFTGAYVRNALEKEEIGLSFI T0375 86 :FQTT 2abqA 82 :EVEG T0375 91 :SVPIATVIIN 2abqA 86 :DTRINVKIKG T0375 103 :SGSRTILYYDRSLPDVSATDFEKVD 2abqA 96 :KQETELNGTAPLIKKEHVQALLEQL T0375 128 :LTQFKWIHIEGRNASEQ 2abqA 123 :LEKGDVLVLAGSVPQAM T0375 148 :LQRIDAHNTRQPPEQKIRVSVEV 2abqA 140 :PQTIYRSMTQIAKERGAFVAVDT T0375 172 :KPREELFQLFGYGDVVFVS 2abqA 163 :SGEALHEVLAAKPSFIKPN T0375 191 :KDVAKHLGF 2abqA 183 :HELSELVSK T0375 200 :QSAEEALRGLYGR 2abqA 197 :EDAIPHVQRLIGE T0375 215 :KGAVLVCAWAEEGADALG 2abqA 210 :GIESILVSFAGDGALFAS T0375 234 :DGKLLHSDAFPPP 2abqA 228 :AEGMFHVNVPSGE T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 2abqA 241 :VRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDG T0375 295 :IV 2abqA 285 :FC Number of specific fragments extracted= 15 number of extra gaps= 0 total=2600 Number of alignments=220 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 3 :QILCVGLVVLDVISLVDKYPK 2abqA 2 :IYTVTLNPSIDYIVQVENFQQ T0375 25 :DSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 23 :GVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYT 2abqA 61 :GFTGAYVRNALEKEEIGLSFI T0375 86 :FQTT 2abqA 82 :EVEG T0375 91 :SVPIATVIIN 2abqA 86 :DTRINVKIKG T0375 103 :SGSRTILYYDRSLPDVSATDFEKVD 2abqA 96 :KQETELNGTAPLIKKEHVQALLEQL T0375 128 :LTQFKWIHIEGRNASEQV 2abqA 123 :LEKGDVLVLAGSVPQAMP T0375 146 :KML 2abqA 142 :TIY T0375 149 :QRIDAHN 2abqA 149 :QIAKERG T0375 164 :IRVSVEV 2abqA 156 :AFVAVDT T0375 172 :KPREELFQLFGYGDVVFVSK 2abqA 163 :SGEALHEVLAAKPSFIKPNH T0375 192 :DVAKHLGF 2abqA 184 :ELSELVSK T0375 200 :QSAEEALRGLYGR 2abqA 197 :EDAIPHVQRLIGE T0375 215 :KGAVLVCAWAEEGADALG 2abqA 210 :GIESILVSFAGDGALFAS T0375 234 :DGKLLHSDAFPPP 2abqA 228 :AEGMFHVNVPSGE T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 2abqA 241 :VRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDG T0375 295 :IV 2abqA 285 :FC Number of specific fragments extracted= 17 number of extra gaps= 0 total=2617 Number of alignments=221 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 3 :QILCVGLVVLDVISLVDKYPK 2abqA 2 :IYTVTLNPSIDYIVQVENFQQ T0375 25 :DSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 23 :GVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYT 2abqA 61 :GFTGAYVRNALEKEEIGLSFI T0375 86 :FQTT 2abqA 82 :EVEG T0375 91 :SVPIATVIIN 2abqA 86 :DTRINVKIKG T0375 103 :SGSRTILYYDRSLPDVSATDFEKVD 2abqA 96 :KQETELNGTAPLIKKEHVQALLEQL T0375 128 :LTQFKWIHIEGRNASEQ 2abqA 123 :LEKGDVLVLAGSVPQAM T0375 148 :LQRIDAHNTRQPPEQKIRVSVEV 2abqA 140 :PQTIYRSMTQIAKERGAFVAVDT T0375 172 :KPREELFQLFGYGDVVFVS 2abqA 163 :SGEALHEVLAAKPSFIKPN T0375 191 :KDVAKHLGF 2abqA 183 :HELSELVSK T0375 200 :QSAEEALRGLYGR 2abqA 197 :EDAIPHVQRLIGE T0375 215 :KGAVLVCAWAEEGADALG 2abqA 210 :GIESILVSFAGDGALFAS T0375 234 :DGKLLHSDAFPPP 2abqA 228 :AEGMFHVNVPSGE T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 2abqA 241 :VRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDG Number of specific fragments extracted= 14 number of extra gaps= 0 total=2631 Number of alignments=222 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 4 :ILCVGLVVLDVISLVDKYPK 2abqA 3 :YTVTLNPSIDYIVQVENFQQ T0375 25 :DSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 23 :GVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYT 2abqA 61 :GFTGAYVRNALEKEEIGLSFI T0375 86 :FQTT 2abqA 82 :EVEG T0375 91 :SVPIATVIIN 2abqA 86 :DTRINVKIKG T0375 103 :SGSRTILYYDRSLPDVSATDFEKVD 2abqA 96 :KQETELNGTAPLIKKEHVQALLEQL T0375 128 :LTQFKWIHIEGRNASEQV 2abqA 123 :LEKGDVLVLAGSVPQAMP T0375 146 :KML 2abqA 142 :TIY T0375 149 :QRIDAHN 2abqA 149 :QIAKERG T0375 164 :IRVSVEV 2abqA 156 :AFVAVDT T0375 172 :KPREELFQLFGYGDVVFVSK 2abqA 163 :SGEALHEVLAAKPSFIKPNH T0375 192 :DVAKHLGF 2abqA 184 :ELSELVSK T0375 200 :QSAEEALRGLYGR 2abqA 197 :EDAIPHVQRLIGE T0375 215 :KGAVLVCAWAEEGADALG 2abqA 210 :GIESILVSFAGDGALFAS T0375 234 :DGKLLHSDAFPPP 2abqA 228 :AEGMFHVNVPSGE T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 2abqA 241 :VRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDG Number of specific fragments extracted= 16 number of extra gaps= 0 total=2647 Number of alignments=223 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 3 :QILCVGLVVLDVISLVDKYP 2abqA 2 :IYTVTLNPSIDYIVQVENFQ T0375 24 :EDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 22 :QGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVF 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEV T0375 89 :TGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQV 2abqA 84 :EGDTRINVKIKGKQETELNGTAPLIKKEHVQALLEQLTELEKGDVLVLAGSVPQAMP T0375 149 :QRIDAHNTRQPPEQKIRVSVEVEKPREEL 2abqA 141 :QTIYRSMTQIAKERGAFVAVDTSGEALHE T0375 179 :QLFGYGDVVFVSKDVAKHLGF 2abqA 170 :VLAAKPSFIKPNHHELSELVS T0375 200 :QSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPP 2abqA 194 :ASIEDAIPHVQRLIGEGIESILVSFAGDGALFASAEGMFHVNVPSGE T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2abqA 241 :VRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGFCTRE Number of specific fragments extracted= 8 number of extra gaps= 0 total=2655 Number of alignments=224 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 3 :QILCVGLVVLDVISLVDKYP 2abqA 2 :IYTVTLNPSIDYIVQVENFQ T0375 24 :EDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 22 :QGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVF 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEV T0375 89 :TGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQV 2abqA 84 :EGDTRINVKIKGKQETELNGTAPLIKKEHVQALLEQLTELEKGDVLVLAGSVPQAMP T0375 149 :QRIDAHNTRQPPEQKIRVSVEVEKPREEL 2abqA 141 :QTIYRSMTQIAKERGAFVAVDTSGEALHE T0375 179 :QLFGYGDVVFVSKDVAKHLGF 2abqA 170 :VLAAKPSFIKPNHHELSELVS T0375 200 :QSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPP 2abqA 194 :ASIEDAIPHVQRLIGEGIESILVSFAGDGALFASAEGMFHVNVPSGE T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2abqA 241 :VRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGFCTRE Number of specific fragments extracted= 8 number of extra gaps= 0 total=2663 Number of alignments=225 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 3 :QILCVGLVVLDVISLVDKYP 2abqA 2 :IYTVTLNPSIDYIVQVENFQ T0375 24 :EDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 22 :QGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVF 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEV T0375 89 :TGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQV 2abqA 84 :EGDTRINVKIKGKQETELNGTAPLIKKEHVQALLEQLTELEKGDVLVLAGSVPQAMP T0375 149 :QRIDAHNTRQPPEQKIRVSVEVEKPREEL 2abqA 141 :QTIYRSMTQIAKERGAFVAVDTSGEALHE T0375 179 :QLFGYGDVVFVSKDVAKHLGF 2abqA 170 :VLAAKPSFIKPNHHELSELVS T0375 200 :QSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPP 2abqA 194 :ASIEDAIPHVQRLIGEGIESILVSFAGDGALFASAEGMFHVNVPSGE T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 2abqA 241 :VRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDG Number of specific fragments extracted= 8 number of extra gaps= 0 total=2671 Number of alignments=226 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 3 :QILCVGLVVLDVISLVDKYP 2abqA 2 :IYTVTLNPSIDYIVQVENFQ T0375 24 :EDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 22 :QGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVF 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEV T0375 89 :TGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQV 2abqA 84 :EGDTRINVKIKGKQETELNGTAPLIKKEHVQALLEQLTELEKGDVLVLAGSVPQAMP T0375 149 :QRIDAHNTRQPPEQKIRVSVEVEKPREEL 2abqA 141 :QTIYRSMTQIAKERGAFVAVDTSGEALHE T0375 179 :QLFGYGDVVFVSKDVAKHLGF 2abqA 170 :VLAAKPSFIKPNHHELSELVS T0375 200 :QSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPP 2abqA 194 :ASIEDAIPHVQRLIGEGIESILVSFAGDGALFASAEGMFHVNVPSGE T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 241 :VRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 8 number of extra gaps= 0 total=2679 Number of alignments=227 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRF 2abqA 237 :PSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2680 Number of alignments=228 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 201 :SAEEALRGLYGRVRKGA 2abqA 195 :SIEDAIPHVQRLIGEGI T0375 218 :VLVCAWAEEGADALGPDGK 2abqA 213 :SILVSFAGDGALFASAEGM T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQV 2abqA 232 :FHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2683 Number of alignments=229 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2abqA)M1 T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDKY 2abqA 8 :NPSIDYIVQVENF T0375 23 :KEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 21 :QQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTT 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEGD T0375 92 :VPIATVIIN 2abqA 87 :TRINVKIKG T0375 103 :SGSRTILYYDRSLPDVSATDFEKVD 2abqA 96 :KQETELNGTAPLIKKEHVQALLEQL T0375 128 :LTQFKWIHIEGRNASEQ 2abqA 123 :LEKGDVLVLAGSVPQAM T0375 145 :VKMLQRIDAHNTRQPPEQK 2abqA 145 :RSMTQIAKERGAFVAVDTS T0375 171 :E 2abqA 164 :G T0375 175 :EELFQLF 2abqA 165 :EALHEVL T0375 182 :GYGDVVFVSKDVAKHL 2abqA 173 :AKPSFIKPNHHELSEL T0375 198 :GF 2abqA 190 :SK T0375 200 :QSAEEALRGLYGRV 2abqA 197 :EDAIPHVQRLIGEG T0375 216 :GAVLVCAWAEEGADALGPDGK 2abqA 211 :IESILVSFAGDGALFASAEGM T0375 238 :LHSDA 2abqA 232 :FHVNV T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 2abqA 237 :PSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGFCTR Number of specific fragments extracted= 16 number of extra gaps= 0 total=2699 Number of alignments=230 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2abqA)M1 T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDKY 2abqA 8 :NPSIDYIVQVENF T0375 23 :KEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 21 :QQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTT 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEGD T0375 92 :VPIATVIIN 2abqA 87 :TRINVKIKG T0375 103 :SGSRTILYYDRSLPDVSATDFEKVD 2abqA 96 :KQETELNGTAPLIKKEHVQALLEQL T0375 128 :LTQFKWIHIEGRNASEQ 2abqA 123 :LEKGDVLVLAGSVPQAM T0375 145 :VKMLQRIDAHNTRQPPEQK 2abqA 145 :RSMTQIAKERGAFVAVDTS T0375 171 :E 2abqA 164 :G T0375 175 :EELFQLF 2abqA 165 :EALHEVL T0375 182 :GYGDVVFVSKDVAKHL 2abqA 173 :AKPSFIKPNHHELSEL T0375 198 :GF 2abqA 190 :SK T0375 200 :QSAEEALRGLYGRV 2abqA 197 :EDAIPHVQRLIGEG T0375 216 :GAVLVCAWAEEGADALGPDGK 2abqA 211 :IESILVSFAGDGALFASAEGM T0375 238 :LHSDA 2abqA 232 :FHVNV T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 2abqA 237 :PSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGFCTR Number of specific fragments extracted= 16 number of extra gaps= 0 total=2715 Number of alignments=231 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2abqA)M1 T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDKY 2abqA 8 :NPSIDYIVQVENF T0375 23 :KEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 21 :QQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQT 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEG T0375 91 :SVPIATVIINE 2abqA 86 :DTRINVKIKGK T0375 104 :GSRT 2abqA 97 :QETE T0375 111 :YDRSLPDVSATDFEKVD 2abqA 101 :LNGTAPLIKKEHVQALL T0375 128 :LTQFKWIHIEGRNASEQ 2abqA 123 :LEKGDVLVLAGSVPQAM T0375 145 :VKMLQRIDAHNTRQPPEQK 2abqA 145 :RSMTQIAKERGAFVAVDTS T0375 174 :REELFQLF 2abqA 164 :GEALHEVL T0375 182 :GYGDVVFVSKDVAKHL 2abqA 173 :AKPSFIKPNHHELSEL T0375 198 :GF 2abqA 190 :SK T0375 200 :QSAEEALRGLYGRV 2abqA 197 :EDAIPHVQRLIGEG T0375 216 :GAVLVCAWAEEGADALGPDGK 2abqA 211 :IESILVSFAGDGALFASAEGM T0375 238 :LHSDA 2abqA 232 :FHVNV T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 2abqA 237 :PSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGFCTR Number of specific fragments extracted= 16 number of extra gaps= 0 total=2731 Number of alignments=232 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2abqA)M1 T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDKY 2abqA 8 :NPSIDYIVQVENF T0375 23 :KEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 21 :QQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVF 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEV T0375 89 :TGSVPIATVIIN 2abqA 84 :EGDTRINVKIKG T0375 103 :SGSRTI 2abqA 96 :KQETEL T0375 112 :DRSLPDVSATDFEKVD 2abqA 102 :NGTAPLIKKEHVQALL T0375 128 :LTQF 2abqA 120 :LTEL T0375 132 :KWIHIEGRNASEQ 2abqA 127 :DVLVLAGSVPQAM T0375 145 :VKMLQRIDAHNTRQPPEQK 2abqA 145 :RSMTQIAKERGAFVAVDTS T0375 174 :REELFQLFGY 2abqA 164 :GEALHEVLAA T0375 184 :GDVVFVSKDVAKHL 2abqA 175 :PSFIKPNHHELSEL T0375 198 :GF 2abqA 190 :SK T0375 200 :QSAEEA 2abqA 194 :ASIEDA T0375 206 :LRGLYGRV 2abqA 203 :VQRLIGEG T0375 216 :GAVLVCAWAEEGADALG 2abqA 211 :IESILVSFAGDGALFAS T0375 234 :DGKLLHSDAF 2abqA 228 :AEGMFHVNVP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 2abqA 238 :SGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGFCTR Number of specific fragments extracted= 18 number of extra gaps= 0 total=2749 Number of alignments=233 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDKY 2abqA 8 :NPSIDYIVQVENF T0375 23 :KEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 21 :QQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTT 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEGD T0375 92 :VPIATVIIN 2abqA 87 :TRINVKIKG T0375 103 :SGSRTILYYDRSLPDVSATDFEKVD 2abqA 96 :KQETELNGTAPLIKKEHVQALLEQL T0375 128 :LTQFKWIHIEGRNASEQ 2abqA 123 :LEKGDVLVLAGSVPQAM T0375 145 :VKMLQRIDAHNTRQPPEQK 2abqA 145 :RSMTQIAKERGAFVAVDTS T0375 171 :E 2abqA 164 :G T0375 175 :EELFQLF 2abqA 165 :EALHEVL T0375 182 :GYGDVVFVSKDVAKHL 2abqA 173 :AKPSFIKPNHHELSEL T0375 198 :GF 2abqA 190 :SK T0375 200 :QSAEEALRGLYGRV 2abqA 197 :EDAIPHVQRLIGEG T0375 216 :GAVLVCAWAEEGADALGPDGK 2abqA 211 :IESILVSFAGDGALFASAEGM T0375 238 :LHSDA 2abqA 232 :FHVNV T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 237 :PSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 16 number of extra gaps= 0 total=2765 Number of alignments=234 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDKY 2abqA 8 :NPSIDYIVQVENF T0375 23 :KEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 21 :QQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTT 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEGD T0375 92 :VPIATVIIN 2abqA 87 :TRINVKIKG T0375 103 :SGSRTILYYDRSLPDVSATDFEKVD 2abqA 96 :KQETELNGTAPLIKKEHVQALLEQL T0375 128 :LTQFKWIHIEGRNASEQ 2abqA 123 :LEKGDVLVLAGSVPQAM T0375 145 :VKMLQRIDAHNTRQPPEQK 2abqA 145 :RSMTQIAKERGAFVAVDTS T0375 171 :E 2abqA 164 :G T0375 175 :EELFQLF 2abqA 165 :EALHEVL T0375 182 :GYGDVVFVSKDVAKHL 2abqA 173 :AKPSFIKPNHHELSEL T0375 198 :GF 2abqA 190 :SK T0375 200 :QSAEEALRGLYGRV 2abqA 197 :EDAIPHVQRLIGEG T0375 216 :GAVLVCAWAEEGADALGPDGK 2abqA 211 :IESILVSFAGDGALFASAEGM T0375 238 :LHSDA 2abqA 232 :FHVNV T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 2abqA 237 :PSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGFC Number of specific fragments extracted= 16 number of extra gaps= 0 total=2781 Number of alignments=235 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDKY 2abqA 8 :NPSIDYIVQVENF T0375 23 :KEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 21 :QQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQT 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEG T0375 91 :SVPIATVIINE 2abqA 86 :DTRINVKIKGK T0375 104 :GSRT 2abqA 97 :QETE T0375 111 :YDRSLPDVSATDFEKVD 2abqA 101 :LNGTAPLIKKEHVQALL T0375 128 :LTQFKWIHIEGRNASEQ 2abqA 123 :LEKGDVLVLAGSVPQAM T0375 145 :VKMLQRIDAHNTRQPPEQK 2abqA 145 :RSMTQIAKERGAFVAVDTS T0375 174 :REELFQLF 2abqA 164 :GEALHEVL T0375 182 :GYGDVVFVSKDVAKHL 2abqA 173 :AKPSFIKPNHHELSEL T0375 198 :GF 2abqA 190 :SK T0375 200 :QSAEEALRGLYGRV 2abqA 197 :EDAIPHVQRLIGEG T0375 216 :GAVLVCAWAEEGADALGPDGK 2abqA 211 :IESILVSFAGDGALFASAEGM T0375 238 :LHSDA 2abqA 232 :FHVNV T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 237 :PSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 16 number of extra gaps= 0 total=2797 Number of alignments=236 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDKY 2abqA 8 :NPSIDYIVQVENF T0375 23 :KEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 21 :QQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVF 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEV T0375 89 :TGSVPIATVIIN 2abqA 84 :EGDTRINVKIKG T0375 103 :SGSRTI 2abqA 96 :KQETEL T0375 112 :DRSLPDVSATDFEKVD 2abqA 102 :NGTAPLIKKEHVQALL T0375 128 :LTQF 2abqA 120 :LTEL T0375 132 :KWIHIEGRNASEQ 2abqA 127 :DVLVLAGSVPQAM T0375 145 :VKMLQRIDAHNTRQPPEQK 2abqA 145 :RSMTQIAKERGAFVAVDTS T0375 174 :REELFQLFGY 2abqA 164 :GEALHEVLAA T0375 184 :GDVVFVSKDVAKHL 2abqA 175 :PSFIKPNHHELSEL T0375 198 :GF 2abqA 190 :SK T0375 200 :QSAEEA 2abqA 194 :ASIEDA T0375 206 :LRGLYGRV 2abqA 203 :VQRLIGEG T0375 216 :GAVLVCAWAEEGADALG 2abqA 211 :IESILVSFAGDGALFAS T0375 234 :DGKLLHSDAF 2abqA 228 :AEGMFHVNVP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 238 :SGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 18 number of extra gaps= 0 total=2815 Number of alignments=237 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 1 :G 2abqA 1 :M T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDK 2abqA 8 :NPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAP 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGG T0375 65 :HVADFVLDDLRRYSVDLRYTVFQTT 2abqA 62 :FTGAYVRNALEKEEIGLSFIEVEGD T0375 92 :VPIATVII 2abqA 87 :TRINVKIK T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 2abqA 95 :GKQETELNGTAPLIKKEHVQALLEQL T0375 127 :DLTQFKWIHIEGRNAS 2abqA 122 :ELEKGDVLVLAGSVPQ T0375 143 :EQVKMLQRIDAHNTRQPPEQKI 2abqA 143 :IYRSMTQIAKERGAFVAVDTSG T0375 171 :EKPREEL 2abqA 165 :EALHEVL T0375 181 :FGYGDVVFVSKDVAKHL 2abqA 172 :AAKPSFIKPNHHELSEL T0375 198 :GFQ 2abqA 190 :SKP T0375 201 :SAEEALRGLYGRVRKGA 2abqA 195 :SIEDAIPHVQRLIGEGI T0375 218 :VLVCAWAEEGADALGPDG 2abqA 213 :SILVSFAGDGALFASAEG T0375 237 :LLHSDAF 2abqA 231 :MFHVNVP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2abqA 238 :SGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGFCTRE Number of specific fragments extracted= 16 number of extra gaps= 0 total=2831 Number of alignments=238 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 1 :G 2abqA 1 :M T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDK 2abqA 8 :NPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAP 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGG T0375 65 :HVADFVLDDLRRYSVDLRYTVFQTT 2abqA 62 :FTGAYVRNALEKEEIGLSFIEVEGD T0375 92 :VPIATVII 2abqA 87 :TRINVKIK T0375 101 :E 2abqA 95 :G T0375 103 :SGSRTIL 2abqA 96 :KQETELN T0375 113 :RSLPDVSATDFEKVD 2abqA 103 :GTAPLIKKEHVQALL T0375 128 :LTQFKWIHIEGRNAS 2abqA 123 :LEKGDVLVLAGSVPQ T0375 143 :EQVKMLQRIDAHNTRQPPEQKI 2abqA 143 :IYRSMTQIAKERGAFVAVDTSG T0375 171 :EKPREEL 2abqA 165 :EALHEVL T0375 181 :FGYGDVVFVSKDVAKHL 2abqA 172 :AAKPSFIKPNHHELSEL T0375 198 :GFQ 2abqA 190 :SKP T0375 201 :SAEEALRGLYGRVRKGA 2abqA 195 :SIEDAIPHVQRLIGEGI T0375 218 :VLVCAWAEEGADALGPDG 2abqA 213 :SILVSFAGDGALFASAEG T0375 237 :LLHSDAF 2abqA 231 :MFHVNVP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2abqA 238 :SGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGFCTRE Number of specific fragments extracted= 18 number of extra gaps= 0 total=2849 Number of alignments=239 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 1 :G 2abqA 1 :M T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDK 2abqA 8 :NPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAP 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGG T0375 65 :HVADFVLDDLRRYSVDLRYTVFQ 2abqA 62 :FTGAYVRNALEKEEIGLSFIEVE T0375 90 :GSVPIATVII 2abqA 85 :GDTRINVKIK T0375 101 :EASGSR 2abqA 95 :GKQETE T0375 111 :YDRSLPDVSATDFEKVD 2abqA 101 :LNGTAPLIKKEHVQALL T0375 128 :LTQFKWIHIEGRNAS 2abqA 123 :LEKGDVLVLAGSVPQ T0375 143 :EQVKMLQRIDAHNTRQPPEQKI 2abqA 143 :IYRSMTQIAKERGAFVAVDTSG T0375 175 :EELFQLF 2abqA 165 :EALHEVL T0375 182 :GYGDVVFVSKDVAKHL 2abqA 173 :AKPSFIKPNHHELSEL T0375 198 :GFQ 2abqA 190 :SKP T0375 201 :SAEEALRGLYGRVRKGA 2abqA 195 :SIEDAIPHVQRLIGEGI T0375 218 :VLVCAWAEEGADALGPD 2abqA 213 :SILVSFAGDGALFASAE T0375 236 :KLLHSDAF 2abqA 230 :GMFHVNVP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 238 :SGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF T0375 293 :DGIV 2abqA 299 :QRTI Number of specific fragments extracted= 18 number of extra gaps= 0 total=2867 Number of alignments=240 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 1 :G 2abqA 1 :M T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDK 2abqA 8 :NPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAP 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGG T0375 65 :HVADFVLDDLRRYSVDLRYTVF 2abqA 62 :FTGAYVRNALEKEEIGLSFIEV T0375 89 :TGSVPIATVII 2abqA 84 :EGDTRINVKIK T0375 102 :ASGSR 2abqA 95 :GKQET T0375 110 :YYDRSLPDVSATDFEKVD 2abqA 100 :ELNGTAPLIKKEHVQALL T0375 128 :LTQF 2abqA 120 :LTEL T0375 132 :KWIHIEGRNAS 2abqA 127 :DVLVLAGSVPQ T0375 143 :EQVKMLQRIDAHNTRQPPEQK 2abqA 143 :IYRSMTQIAKERGAFVAVDTS T0375 174 :REELFQLF 2abqA 164 :GEALHEVL T0375 182 :GYGDVVFVSKDVAKHL 2abqA 173 :AKPSFIKPNHHELSEL T0375 198 :GFQ 2abqA 190 :SKP T0375 201 :SAEEALRGLYGRVRKGA 2abqA 195 :SIEDAIPHVQRLIGEGI T0375 218 :VLVCAWAEEGADALGPD 2abqA 213 :SILVSFAGDGALFASAE T0375 236 :KLLHSDAF 2abqA 230 :GMFHVNVP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 238 :SGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF T0375 293 :DGIV 2abqA 299 :QRTI Number of specific fragments extracted= 19 number of extra gaps= 0 total=2886 Number of alignments=241 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDK 2abqA 8 :NPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAP 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGG T0375 65 :HVADFVLDDLRRYSVDLRYTVFQTT 2abqA 62 :FTGAYVRNALEKEEIGLSFIEVEGD T0375 92 :VPIATVII 2abqA 87 :TRINVKIK T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 2abqA 95 :GKQETELNGTAPLIKKEHVQALLEQL T0375 127 :DLTQFKWIHIEGRNAS 2abqA 122 :ELEKGDVLVLAGSVPQ T0375 143 :EQVKMLQRIDAHNTRQPPEQKI 2abqA 143 :IYRSMTQIAKERGAFVAVDTSG T0375 171 :EKPREEL 2abqA 165 :EALHEVL T0375 181 :FGYGDVVFVSKDVAKHL 2abqA 172 :AAKPSFIKPNHHELSEL T0375 198 :GFQ 2abqA 190 :SKP T0375 201 :SAEEALRGLYGRVRKGA 2abqA 195 :SIEDAIPHVQRLIGEGI T0375 218 :VLVCAWAEEGADALGPDG 2abqA 213 :SILVSFAGDGALFASAEG T0375 237 :LLHSDAF 2abqA 231 :MFHVNVP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 238 :SGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 15 number of extra gaps= 0 total=2901 Number of alignments=242 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDK 2abqA 8 :NPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAP 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGG T0375 65 :HVADFVLDDLRRYSVDLRYTVFQTT 2abqA 62 :FTGAYVRNALEKEEIGLSFIEVEGD T0375 92 :VPIATVII 2abqA 87 :TRINVKIK T0375 101 :E 2abqA 95 :G T0375 103 :SGSRTIL 2abqA 96 :KQETELN T0375 113 :RSLPDVSATDFEKVD 2abqA 103 :GTAPLIKKEHVQALL T0375 128 :LTQFKWIHIEGRNAS 2abqA 123 :LEKGDVLVLAGSVPQ T0375 143 :EQVKMLQRIDAHNTRQPPEQKI 2abqA 143 :IYRSMTQIAKERGAFVAVDTSG T0375 171 :EKPREEL 2abqA 165 :EALHEVL T0375 181 :FGYGDVVFVSKDVAKHL 2abqA 172 :AAKPSFIKPNHHELSEL T0375 198 :GFQ 2abqA 190 :SKP T0375 201 :SAEEALRGLYGRVRKGA 2abqA 195 :SIEDAIPHVQRLIGEGI T0375 218 :VLVCAWAEEGADALGPDG 2abqA 213 :SILVSFAGDGALFASAEG T0375 237 :LLHSDAF 2abqA 231 :MFHVNVP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 238 :SGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 17 number of extra gaps= 0 total=2918 Number of alignments=243 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDK 2abqA 8 :NPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAP 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGG T0375 65 :HVADFVLDDLRRYSVDLRYTVFQ 2abqA 62 :FTGAYVRNALEKEEIGLSFIEVE T0375 90 :GSVPIATVII 2abqA 85 :GDTRINVKIK T0375 101 :EASGSR 2abqA 95 :GKQETE T0375 111 :YDRSLPDVSATDFEKVD 2abqA 101 :LNGTAPLIKKEHVQALL T0375 128 :LTQFKWIHIEGRNAS 2abqA 123 :LEKGDVLVLAGSVPQ T0375 143 :EQVKMLQRIDAHNTRQPPEQKI 2abqA 143 :IYRSMTQIAKERGAFVAVDTSG T0375 175 :EELFQLF 2abqA 165 :EALHEVL T0375 182 :GYGDVVFVSKDVAKHL 2abqA 173 :AKPSFIKPNHHELSEL T0375 198 :GFQ 2abqA 190 :SKP T0375 201 :SAEEALRGLYGRVRKGA 2abqA 195 :SIEDAIPHVQRLIGEGI T0375 218 :VLVCAWAEEGADALGPD 2abqA 213 :SILVSFAGDGALFASAE T0375 236 :KLLHSDAF 2abqA 230 :GMFHVNVP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 238 :SGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 16 number of extra gaps= 0 total=2934 Number of alignments=244 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDK 2abqA 8 :NPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAP 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGG T0375 65 :HVADFVLDDLRRYSVDLRYTVF 2abqA 62 :FTGAYVRNALEKEEIGLSFIEV T0375 89 :TGSVPIATVII 2abqA 84 :EGDTRINVKIK T0375 102 :ASGSR 2abqA 95 :GKQET T0375 110 :YYDRSLPDVSATDFEKVD 2abqA 100 :ELNGTAPLIKKEHVQALL T0375 128 :LTQF 2abqA 120 :LTEL T0375 132 :KWIHIEGRNAS 2abqA 127 :DVLVLAGSVPQ T0375 143 :EQVKMLQRIDAHNTRQPPEQK 2abqA 143 :IYRSMTQIAKERGAFVAVDTS T0375 174 :REELFQLF 2abqA 164 :GEALHEVL T0375 182 :GYGDVVFVSKDVAKHL 2abqA 173 :AKPSFIKPNHHELSEL T0375 198 :GFQ 2abqA 190 :SKP T0375 201 :SAEEALRGLYGRVRKGA 2abqA 195 :SIEDAIPHVQRLIGEGI T0375 218 :VLVCAWAEEGADALGPD 2abqA 213 :SILVSFAGDGALFASAE T0375 236 :KLLHSDAF 2abqA 230 :GMFHVNVP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 238 :SGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 17 number of extra gaps= 0 total=2951 Number of alignments=245 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 1 :GSQILCV 2abqA 1 :MIYTVTL T0375 9 :LVVLDVISLVDK 2abqA 8 :NPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEGDTRINVKIK T0375 101 :EASGSRTILYYDR 2abqA 95 :GKQETELNGTAPL T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASE 2abqA 109 :KKEHVQALLEQLTELEKGDVLVLAGSVPQA T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVS 2abqA 142 :TIYRSMTQIAKERGAFVAVDTSGE T0375 175 :EELFQLFGYGDVVFVSKDVAKHLGFQ 2abqA 166 :ALHEVLAAKPSFIKPNHHELSELVSK T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 2abqA 196 :IEDAIPHVQRLIGEGIESILVSFAGDGALFASAEG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2abqA 231 :MFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGFCTRE Number of specific fragments extracted= 10 number of extra gaps= 0 total=2961 Number of alignments=246 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 1 :GSQILCV 2abqA 1 :MIYTVTL T0375 9 :LVVLDVISLVDK 2abqA 8 :NPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEGDTRINVKIK T0375 101 :EASGSRTILYYDR 2abqA 95 :GKQETELNGTAPL T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASE 2abqA 109 :KKEHVQALLEQLTELEKGDVLVLAGSVPQA T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 2abqA 142 :TIYRSMTQIAKERGAFVAVDTSGE T0375 175 :EELFQLFGYGDVVFVSKDVAKHLGFQ 2abqA 166 :ALHEVLAAKPSFIKPNHHELSELVSK T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 2abqA 196 :IEDAIPHVQRLIGEGIESILVSFAGDGALFASAEG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 2abqA 231 :MFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGFC Number of specific fragments extracted= 10 number of extra gaps= 0 total=2971 Number of alignments=247 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (2abqA)M1 T0375 3 :QILCVGLVVLDVISLVDK 2abqA 2 :IYTVTLNPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTTGSVPIA 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEGDTRINVK T0375 99 :INEASGSRTILYYDR 2abqA 93 :IKGKQETELNGTAPL T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASE 2abqA 109 :KKEHVQALLEQLTELEKGDVLVLAGSVPQA T0375 144 :QVKMLQRIDAHNTRQPPEQKIR 2abqA 142 :TIYRSMTQIAKERGAFVAVDTS T0375 174 :REELFQLF 2abqA 164 :GEALHEVL T0375 182 :GYGDVVFVSKDVAKHLGFQ 2abqA 173 :AKPSFIKPNHHELSELVSK T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 2abqA 197 :EDAIPHVQRLIGEGIESILVSFAGDGALFASAEG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 231 :MFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 10 number of extra gaps= 0 total=2981 Number of alignments=248 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set Warning: unaligning (T0375)Q3 because first residue in template chain is (2abqA)M1 T0375 4 :ILCVG 2abqA 2 :IYTVT T0375 9 :LVVLDVISLVDK 2abqA 8 :NPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEGDTRINVKIK T0375 101 :EASGSRTIL 2abqA 95 :GKQETELNG T0375 114 :SLPDVSATDFEKV 2abqA 104 :TAPLIKKEHVQAL T0375 127 :DLTQFK 2abqA 119 :QLTELE T0375 133 :WIHIEGRNASE 2abqA 127 :DVLVLAGSVPQ T0375 144 :QVKMLQRIDAHNTRQPPEQKIR 2abqA 142 :TIYRSMTQIAKERGAFVAVDTS T0375 174 :REELFQLF 2abqA 164 :GEALHEVL T0375 182 :GYGDVVFVSKDVAKHLGFQ 2abqA 173 :AKPSFIKPNHHELSELVSK T0375 201 :S 2abqA 194 :A T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 2abqA 197 :EDAIPHVQRLIGEGIESILVSFAGDGALFASAEG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 231 :MFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 14 number of extra gaps= 0 total=2995 Number of alignments=249 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 9 :LVVLDVISLVDK 2abqA 8 :NPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEGDTRINVKIK T0375 101 :EASGSRTILYYDR 2abqA 95 :GKQETELNGTAPL T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASE 2abqA 109 :KKEHVQALLEQLTELEKGDVLVLAGSVPQA T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVS 2abqA 142 :TIYRSMTQIAKERGAFVAVDTSGE T0375 175 :EELFQLFGYGDVVFVSKDVAKHLGFQ 2abqA 166 :ALHEVLAAKPSFIKPNHHELSELVSK T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 2abqA 196 :IEDAIPHVQRLIGEGIESILVSFAGDGALFASAEG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 231 :MFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 9 number of extra gaps= 0 total=3004 Number of alignments=250 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 11 :VLDVISLVDK 2abqA 10 :SIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEGDTRINVKIK T0375 101 :EASGSRTILYYDR 2abqA 95 :GKQETELNGTAPL T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASE 2abqA 109 :KKEHVQALLEQLTELEKGDVLVLAGSVPQA T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 2abqA 142 :TIYRSMTQIAKERGAFVAVDTSGE T0375 175 :EELFQLFGYGDVVFVSKDVAKHLGFQ 2abqA 166 :ALHEVLAAKPSFIKPNHHELSELVSK T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 2abqA 196 :IEDAIPHVQRLIGEGIESILVSFAGDGALFASAEG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 2abqA 231 :MFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAF Number of specific fragments extracted= 9 number of extra gaps= 0 total=3013 Number of alignments=251 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 4 :ILCVGLVVLDVISLVDK 2abqA 3 :YTVTLNPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTTGSVPIA 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEGDTRINVK T0375 99 :INEASGSRTILYYDR 2abqA 93 :IKGKQETELNGTAPL T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASE 2abqA 109 :KKEHVQALLEQLTELEKGDVLVLAGSVPQA T0375 144 :QVKMLQRIDAHNTRQPPEQKIR 2abqA 142 :TIYRSMTQIAKERGAFVAVDTS T0375 174 :REELFQLF 2abqA 164 :GEALHEVL T0375 182 :GYGDVVFVSKDVAKHLGFQ 2abqA 173 :AKPSFIKPNHHELSELVSK T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 2abqA 197 :EDAIPHVQRLIGEGIESILVSFAGDGALFASAEG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 2abqA 231 :MFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDG Number of specific fragments extracted= 10 number of extra gaps= 0 total=3023 Number of alignments=252 # 2abqA read from 2abqA/merged-a2m # found chain 2abqA in template set T0375 4 :ILCVGLVVLDVISLVDK 2abqA 3 :YTVTLNPSIDYIVQVEN T0375 22 :PKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMA 2abqA 20 :FQQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLG T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 2abqA 61 :GFTGAYVRNALEKEEIGLSFIEVEGDTRINVKIK T0375 101 :EASGSRTIL 2abqA 95 :GKQETELNG T0375 114 :SLPDVSATDFEKV 2abqA 104 :TAPLIKKEHVQAL T0375 127 :DLTQFK 2abqA 119 :QLTELE T0375 133 :WIHIEGRNASE 2abqA 127 :DVLVLAGSVPQ T0375 144 :QVKMLQRIDAHNTRQPPEQKIR 2abqA 142 :TIYRSMTQIAKERGAFVAVDTS T0375 174 :REELFQLF 2abqA 164 :GEALHEVL T0375 182 :GYGDVVFVSKDVAKHLGFQ 2abqA 173 :AKPSFIKPNHHELSELVSK T0375 201 :S 2abqA 194 :A T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 2abqA 197 :EDAIPHVQRLIGEGIESILVSFAGDGALFASAEG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2abqA 231 :MFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGF Number of specific fragments extracted= 13 number of extra gaps= 0 total=3036 Number of alignments=253 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tyyA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0375 read from 1tyyA/merged-a2m # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)N100 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)S105 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQT 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDA T0375 91 :SVPIATVII 1tyyA 81 :DLTSAVLIV T0375 106 :RTILYYDRSLPDVSATDFEK 1tyyA 99 :FTYLVHPGADTYVSPQDLPP T0375 128 :LTQFKWIHIEG 1tyyA 119 :FRQYEWFYFSS T0375 139 :RNASEQVKMLQRIDAHN 1tyyA 136 :PAREACLEGARRMREAG T0375 156 :TRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSK 1tyyA 155 :VLFDVNLRSKMWGNTDEIPELIARSAALASICKVSA T0375 192 :DVAKHLGFQSAEEALRGLYGR 1tyyA 192 :ELCQLSGASHWQDARYYLRDL T0375 215 :KGAVLVCAWAEEGADALG 1tyyA 213 :GCDTTIISLGADGALLIT T0375 234 :DGKLLHSDAFPPP 1tyyA 231 :AEGEFHFPAPRVD T0375 248 :VVDTLGAGDTFNASVIFSLSQGRS 1tyyA 244 :VVDTTGAGDAFVGGLLFTLSRANC T0375 272 :VQEALRFGCQVAGKKCGLQG 1tyyA 273 :LAEAISNANACGAMAVTAKG T0375 294 :GIV 1tyyA 293 :AMT Number of specific fragments extracted= 13 number of extra gaps= 0 total=3049 Number of alignments=254 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)N100 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)S105 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQT 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDA T0375 91 :SVPIATVII 1tyyA 81 :DLTSAVLIV T0375 106 :RTILYYDRSLPDVSATDFEK 1tyyA 99 :FTYLVHPGADTYVSPQDLPP T0375 128 :LTQFKWIHIEG 1tyyA 119 :FRQYEWFYFSS T0375 139 :RNASEQVKMLQRIDAHNTRQ 1tyyA 136 :PAREACLEGARRMREAGGYV T0375 159 :PPEQKIRVSVEVEKPREELFQLFGYGDVVFVSK 1tyyA 158 :DVNLRSKMWGNTDEIPELIARSAALASICKVSA T0375 192 :DVAKHLGFQSAEEALRGLYGR 1tyyA 192 :ELCQLSGASHWQDARYYLRDL T0375 215 :KGAVLVCAWAEEGADALG 1tyyA 213 :GCDTTIISLGADGALLIT T0375 234 :DGKLLHSDAFPPP 1tyyA 231 :AEGEFHFPAPRVD T0375 248 :VVDTLGAGDTFNASVIFSLSQGRS 1tyyA 244 :VVDTTGAGDAFVGGLLFTLSRANC T0375 272 :VQEALRFGCQVAGKKCGLQG 1tyyA 273 :LAEAISNANACGAMAVTAKG T0375 294 :GIV 1tyyA 293 :AMT Number of specific fragments extracted= 13 number of extra gaps= 0 total=3062 Number of alignments=255 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)N100 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)S105 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 4 :ILCVGLVVLDVISLVDK 1tyyA 7 :VWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQT 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDA T0375 91 :SVPIATVII 1tyyA 81 :DLTSAVLIV T0375 106 :RTILYYDRSLPDVSATDFEK 1tyyA 99 :FTYLVHPGADTYVSPQDLPP T0375 128 :LTQFKWIHIEG 1tyyA 119 :FRQYEWFYFSS T0375 139 :RNASEQVKMLQRIDAHN 1tyyA 136 :PAREACLEGARRMREAG T0375 156 :TRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSK 1tyyA 155 :VLFDVNLRSKMWGNTDEIPELIARSAALASICKVSA T0375 192 :DVAKHLGFQSAEEALRGLYGR 1tyyA 192 :ELCQLSGASHWQDARYYLRDL T0375 215 :KGAVLVCAWAEEGADALG 1tyyA 213 :GCDTTIISLGADGALLIT T0375 234 :DGKLLHSDAFPPP 1tyyA 231 :AEGEFHFPAPRVD T0375 248 :VVDTLGAGDTFNASVIFSLSQGRS 1tyyA 244 :VVDTTGAGDAFVGGLLFTLSRANC T0375 272 :VQEALRFGCQVAGKKCGLQG 1tyyA 273 :LAEAISNANACGAMAVTAKG Number of specific fragments extracted= 12 number of extra gaps= 0 total=3074 Number of alignments=256 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)N100 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)S105 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQT 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDA T0375 91 :SVPIATVII 1tyyA 81 :DLTSAVLIV T0375 106 :RTILYYDRSLPDVSATDFEK 1tyyA 99 :FTYLVHPGADTYVSPQDLPP T0375 128 :LTQFKWIHIEG 1tyyA 119 :FRQYEWFYFSS T0375 139 :RNASEQVKMLQRIDAHNTRQ 1tyyA 136 :PAREACLEGARRMREAGGYV T0375 159 :PPEQKIRVSVEVEKPREELFQLFGYGDVVFVSK 1tyyA 158 :DVNLRSKMWGNTDEIPELIARSAALASICKVSA T0375 192 :DVAKHLGFQSAEEALRGLYGR 1tyyA 192 :ELCQLSGASHWQDARYYLRDL T0375 215 :KGAVLVCAWAEEGADALG 1tyyA 213 :GCDTTIISLGADGALLIT T0375 234 :DGKLLHSDAFPPP 1tyyA 231 :AEGEFHFPAPRVD T0375 248 :VVDTLGAGDTFNASVIFSLSQGRS 1tyyA 244 :VVDTTGAGDAFVGGLLFTLSRANC T0375 272 :VQEALRFGCQVAGKKCGLQG 1tyyA 273 :LAEAISNANACGAMAVTAKG Number of specific fragments extracted= 12 number of extra gaps= 0 total=3086 Number of alignments=257 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)S105 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 106 :RTILYYDRSLPDVSATDFEK 1tyyA 99 :FTYLVHPGADTYVSPQDLPP T0375 128 :LTQFKWIHIEGRNASE 1tyyA 119 :FRQYEWFYFSSIGLTD T0375 146 :KMLQRIDAHNTRQPPEQKIRVSVEVEK 1tyyA 135 :RPAREACLEGARRMREAGGYVLFDVNL T0375 173 :PREELFQLFGYGDVVFVS 1tyyA 172 :IPELIARSAALASICKVS T0375 191 :KDVAKHLGFQSAEEALRGLYGR 1tyyA 191 :DELCQLSGASHWQDARYYLRDL T0375 215 :KGAVLVCAWAEEGADALGPDGK 1tyyA 213 :GCDTTIISLGADGALLITAEGE T0375 238 :LHSDAFPP 1tyyA 235 :FHFPAPRV T0375 247 :RVVDTLGAGDTFNASVIFSLSQG 1tyyA 243 :DVVDTTGAGDAFVGGLLFTLSRA T0375 270 :RSVQEALRFGCQVAGKKCGLQGF 1tyyA 271 :ALLAEAISNANACGAMAVTAKGA T0375 293 :DGIV 1tyyA 295 :TALP Number of specific fragments extracted= 12 number of extra gaps= 0 total=3098 Number of alignments=258 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S105 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 106 :RTILYYDRSLPDVSATDFEK 1tyyA 99 :FTYLVHPGADTYVSPQDLPP T0375 128 :LTQFKWIHIEGRNASE 1tyyA 119 :FRQYEWFYFSSIGLTD T0375 146 :KMLQRIDAHNTRQPPEQKIRVSVEVEK 1tyyA 135 :RPAREACLEGARRMREAGGYVLFDVNL T0375 173 :PREELFQLFGYGDVVFVS 1tyyA 172 :IPELIARSAALASICKVS T0375 191 :KDVAKHLGFQSAEEALRGLYGR 1tyyA 191 :DELCQLSGASHWQDARYYLRDL T0375 215 :KGAVLVCAWAEEGADALGPDGK 1tyyA 213 :GCDTTIISLGADGALLITAEGE T0375 238 :LHSDAFPP 1tyyA 235 :FHFPAPRV T0375 247 :RVVDTLGAGDTFNASVIFSLSQG 1tyyA 243 :DVVDTTGAGDAFVGGLLFTLSRA T0375 270 :RSVQEALRFGCQVAGKKCGLQGF 1tyyA 271 :ALLAEAISNANACGAMAVTAKGA T0375 293 :DGIV 1tyyA 295 :TALP Number of specific fragments extracted= 12 number of extra gaps= 0 total=3110 Number of alignments=259 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S105 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 4 :ILCVGLVVLDVISLVDK 1tyyA 7 :VWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 106 :RTILYYDRSLPDVSATDFEK 1tyyA 99 :FTYLVHPGADTYVSPQDLPP T0375 128 :LTQFKWIHIEGRNASE 1tyyA 119 :FRQYEWFYFSSIGLTD T0375 146 :KMLQRIDAHNTRQPPEQKIRVSVEVEK 1tyyA 135 :RPAREACLEGARRMREAGGYVLFDVNL T0375 173 :PREELFQLFGYGDVVFVS 1tyyA 172 :IPELIARSAALASICKVS T0375 191 :KDVAKHLGFQSAEEALRGLYGR 1tyyA 191 :DELCQLSGASHWQDARYYLRDL T0375 215 :KGAVLVCAWAEEGADALGPDGK 1tyyA 213 :GCDTTIISLGADGALLITAEGE T0375 238 :LHSDAFPP 1tyyA 235 :FHFPAPRV T0375 247 :RVVDTLGAGDTFNASVIFSLSQG 1tyyA 243 :DVVDTTGAGDAFVGGLLFTLSRA T0375 270 :RSVQEALRFGCQVAGKKCGLQG 1tyyA 271 :ALLAEAISNANACGAMAVTAKG Number of specific fragments extracted= 11 number of extra gaps= 0 total=3121 Number of alignments=260 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S105 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 106 :RTILYYDRSLPDVSATDFEK 1tyyA 99 :FTYLVHPGADTYVSPQDLPP T0375 128 :LTQFKWIHIEGRNASE 1tyyA 119 :FRQYEWFYFSSIGLTD T0375 146 :KMLQRIDAHNTRQPPEQKIRVSVEVEK 1tyyA 135 :RPAREACLEGARRMREAGGYVLFDVNL T0375 173 :PREELFQLFGYGDVVFVS 1tyyA 172 :IPELIARSAALASICKVS T0375 191 :KDVAKHLGFQSAEEALRGLYGR 1tyyA 191 :DELCQLSGASHWQDARYYLRDL T0375 215 :KGAVLVCAWAEEGADALGPDGK 1tyyA 213 :GCDTTIISLGADGALLITAEGE T0375 238 :LHSDAFPP 1tyyA 235 :FHFPAPRV T0375 247 :RVVDTLGAGDTFNASVIFSLSQG 1tyyA 243 :DVVDTTGAGDAFVGGLLFTLSRA T0375 270 :RSVQEALRFGCQVAGKKCGLQG 1tyyA 271 :ALLAEAISNANACGAMAVTAKG Number of specific fragments extracted= 11 number of extra gaps= 0 total=3132 Number of alignments=261 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set T0375 231 :LGPDGKLLHSDA 1tyyA 221 :LGADGALLITAE T0375 243 :FPPPR 1tyyA 237 :FPAPR T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 1tyyA 244 :VVDTTGAGDAFVGGLLFTLSRANCWDHALLAEAISNANACG Number of specific fragments extracted= 3 number of extra gaps= 0 total=3135 Number of alignments=262 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)N100 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 22 :PKEDSEIRC 1tyyA 20 :EKQNSYLKC T0375 37 :RGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1tyyA 29 :PGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRL T0375 89 :TGSVPIATVII 1tyyA 79 :DADLTSAVLIV T0375 108 :ILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVE 1tyyA 99 :FTYLVHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDRPAREACLEGARRMREAGGYVLFDVNLR T0375 172 :KPREELFQLF 1tyyA 167 :GNTDEIPELI T0375 182 :GYGDVVFVSKDVAKHLG 1tyyA 181 :ALASICKVSADELCQLS T0375 199 :FQSAEEALRGLYG 1tyyA 202 :WQDARYYLRDLGC T0375 225 :EEGADALGPDGKLLHSD 1tyyA 215 :DTTIISLGADGALLITA T0375 242 :AFPPPR 1tyyA 236 :HFPAPR T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 1tyyA 244 :VVDTTGAGDAFVGGLLFTLSRANCWDHALLAEAISNANACG Number of specific fragments extracted= 10 number of extra gaps= 0 total=3145 Number of alignments=263 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISL 1tyyA 6 :KVWVIGDASVDLVPE T0375 29 :RCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 1tyyA 21 :KQNSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDAD T0375 91 :SVPIATVI 1tyyA 82 :LTSAVLIV T0375 108 :I 1tyyA 99 :F T0375 109 :LYYDRSLPDVSATDFEK 1tyyA 102 :LVHPGADTYVSPQDLPP T0375 128 :LTQFKWIHIEGRNASEQ 1tyyA 119 :FRQYEWFYFSSIGLTDR T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 142 :LEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSAEEALRGLYGRV 1tyyA 198 :GASHWQDARYYLRDLG T0375 216 :GAVLVCAWAEEGADALGPDGK 1tyyA 214 :CDTTIISLGADGALLITAEGE T0375 238 :LHSDA 1tyyA 235 :FHFPA T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQG 1tyyA 240 :PRVDVVDTTGAGDAFVGGLLFTLSRA T0375 270 :RSVQEALRFGCQVAGKKCGLQGFDGI 1tyyA 271 :ALLAEAISNANACGAMAVTAKGAMTA Number of specific fragments extracted= 13 number of extra gaps= 0 total=3158 Number of alignments=264 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLV 1tyyA 6 :KVWVIGDASVDLVPEK T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 1tyyA 22 :QNSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDAD T0375 91 :SVPIATVI 1tyyA 82 :LTSAVLIV T0375 108 :I 1tyyA 99 :F T0375 109 :LYYDRSLPDVSATDFEK 1tyyA 102 :LVHPGADTYVSPQDLPP T0375 128 :LTQFKWIHIEGRNASEQ 1tyyA 119 :FRQYEWFYFSSIGLTDR T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 142 :LEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSAEEALRGLYGRV 1tyyA 198 :GASHWQDARYYLRDLG T0375 216 :GAVLVCAWAEEGADALGPDGK 1tyyA 214 :CDTTIISLGADGALLITAEGE T0375 238 :LHSDA 1tyyA 235 :FHFPA T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQG 1tyyA 240 :PRVDVVDTTGAGDAFVGGLLFTLSRA T0375 272 :VQEALRFGCQVAGKKCGLQGFDGI 1tyyA 273 :LAEAISNANACGAMAVTAKGAMTA Number of specific fragments extracted= 13 number of extra gaps= 0 total=3171 Number of alignments=265 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISL 1tyyA 6 :KVWVIGDASVDLVPE T0375 23 :KED 1tyyA 21 :KQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDAD T0375 91 :SVPIATVI 1tyyA 82 :LTSAVLIV T0375 108 :ILYYDR 1tyyA 99 :FTYLVH T0375 114 :SLPDVSATDFEK 1tyyA 107 :ADTYVSPQDLPP T0375 128 :LTQFKWIHIE 1tyyA 119 :FRQYEWFYFS T0375 139 :RNASEQ 1tyyA 132 :LTDRPA T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 142 :LEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSAEEALRGLYGRV 1tyyA 198 :GASHWQDARYYLRDLG T0375 216 :GAVLVCAWAEEGADALGPDGK 1tyyA 214 :CDTTIISLGADGALLITAEGE T0375 238 :LHSDA 1tyyA 235 :FHFPA T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQG 1tyyA 240 :PRVDVVDTTGAGDAFVGGLLFTLSRA T0375 270 :RS 1tyyA 268 :WD T0375 272 :VQEALRFGCQVAGKKCGLQGFDGI 1tyyA 273 :LAEAISNANACGAMAVTAKGAMTA Number of specific fragments extracted= 16 number of extra gaps= 0 total=3187 Number of alignments=266 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISL 1tyyA 6 :KVWVIGDASVDLVPE T0375 23 :KED 1tyyA 21 :KQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 108 :ILYYDR 1tyyA 99 :FTYLVH T0375 114 :SLPDVSATDFEK 1tyyA 107 :ADTYVSPQDLPP T0375 128 :LTQFKWIHIE 1tyyA 119 :FRQYEWFYFS T0375 140 :NASEQ 1tyyA 133 :TDRPA T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 142 :LEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSA 1tyyA 198 :GASHW T0375 208 :GLYGRV 1tyyA 208 :YLRDLG T0375 216 :GAVLVCAWAEEGADALG 1tyyA 214 :CDTTIISLGADGALLIT T0375 234 :DGKLLHSDAF 1tyyA 231 :AEGEFHFPAP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1tyyA 241 :RVDVVDTTGAGDAFVGGLLFTLSR T0375 269 :GRS 1tyyA 267 :CWD T0375 272 :VQEALRFGCQVAGKKCGLQGFDGI 1tyyA 273 :LAEAISNANACGAMAVTAKGAMTA Number of specific fragments extracted= 16 number of extra gaps= 0 total=3203 Number of alignments=267 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISL 1tyyA 6 :KVWVIGDASVDLVPE T0375 29 :RCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 1tyyA 21 :KQNSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDAD T0375 91 :SVPIATVI 1tyyA 82 :LTSAVLIV T0375 108 :I 1tyyA 99 :F T0375 109 :LYYDRSLPDVSATDFEK 1tyyA 102 :LVHPGADTYVSPQDLPP T0375 128 :LTQFKWIHIEGRNASEQ 1tyyA 119 :FRQYEWFYFSSIGLTDR T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 142 :LEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSAEEALRGLYGRV 1tyyA 198 :GASHWQDARYYLRDLG T0375 216 :GAVLVCAWAEEGADALGPDGK 1tyyA 214 :CDTTIISLGADGALLITAEGE T0375 238 :LHSDA 1tyyA 235 :FHFPA T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQG 1tyyA 240 :PRVDVVDTTGAGDAFVGGLLFTLSRA T0375 270 :RSVQEALRFGCQVAGKKCGLQGFD 1tyyA 271 :ALLAEAISNANACGAMAVTAKGAM Number of specific fragments extracted= 13 number of extra gaps= 0 total=3216 Number of alignments=268 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLV 1tyyA 6 :KVWVIGDASVDLVPEK T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 1tyyA 22 :QNSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDAD T0375 91 :SVPIATVI 1tyyA 82 :LTSAVLIV T0375 108 :I 1tyyA 99 :F T0375 109 :LYYDRSLPDVSATDFEK 1tyyA 102 :LVHPGADTYVSPQDLPP T0375 128 :LTQFKWIHIEGRNASEQ 1tyyA 119 :FRQYEWFYFSSIGLTDR T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 142 :LEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSAEEALRGLYGRV 1tyyA 198 :GASHWQDARYYLRDLG T0375 216 :GAVLVCAWAEEGADALGPDGK 1tyyA 214 :CDTTIISLGADGALLITAEGE T0375 238 :LHSDA 1tyyA 235 :FHFPA T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQG 1tyyA 240 :PRVDVVDTTGAGDAFVGGLLFTLSRA T0375 272 :VQEALRFGCQVAGKKCGLQGFDG 1tyyA 273 :LAEAISNANACGAMAVTAKGAMT Number of specific fragments extracted= 13 number of extra gaps= 0 total=3229 Number of alignments=269 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISL 1tyyA 6 :KVWVIGDASVDLVPE T0375 23 :KED 1tyyA 21 :KQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDAD T0375 91 :SVPIATVI 1tyyA 82 :LTSAVLIV T0375 108 :ILYYDR 1tyyA 99 :FTYLVH T0375 114 :SLPDVSATDFEK 1tyyA 107 :ADTYVSPQDLPP T0375 128 :LTQFKWIHIE 1tyyA 119 :FRQYEWFYFS T0375 139 :RNASEQ 1tyyA 132 :LTDRPA T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 142 :LEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSAEEALRGLYGRV 1tyyA 198 :GASHWQDARYYLRDLG T0375 216 :GAVLVCAWAEEGADALGPDGK 1tyyA 214 :CDTTIISLGADGALLITAEGE T0375 238 :LHSDA 1tyyA 235 :FHFPA T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQG 1tyyA 240 :PRVDVVDTTGAGDAFVGGLLFTLSRA T0375 270 :RS 1tyyA 268 :WD T0375 272 :VQEALRFGCQVAGKKCGLQGF 1tyyA 273 :LAEAISNANACGAMAVTAKGA Number of specific fragments extracted= 16 number of extra gaps= 0 total=3245 Number of alignments=270 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISL 1tyyA 6 :KVWVIGDASVDLVPE T0375 23 :KED 1tyyA 21 :KQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 108 :ILYYDR 1tyyA 99 :FTYLVH T0375 114 :SLPDVSATDFEK 1tyyA 107 :ADTYVSPQDLPP T0375 128 :LTQFKWIHIE 1tyyA 119 :FRQYEWFYFS T0375 140 :NASEQ 1tyyA 133 :TDRPA T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 142 :LEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSA 1tyyA 198 :GASHW T0375 208 :GLYGRV 1tyyA 208 :YLRDLG T0375 216 :GAVLVCAWAEEGADALG 1tyyA 214 :CDTTIISLGADGALLIT T0375 234 :DGKLLHSDAF 1tyyA 231 :AEGEFHFPAP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1tyyA 241 :RVDVVDTTGAGDAFVGGLLFTLSR T0375 269 :GRS 1tyyA 267 :CWD T0375 272 :VQEALRFGCQVAGKKCGLQGFD 1tyyA 273 :LAEAISNANACGAMAVTAKGAM Number of specific fragments extracted= 16 number of extra gaps= 0 total=3261 Number of alignments=271 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 108 :I 1tyyA 99 :F T0375 109 :LYYDRSLPDVSATDFEKVD 1tyyA 102 :LVHPGADTYVSPQDLPPFR T0375 130 :QFKWIHIEGRNA 1tyyA 121 :QYEWFYFSSIGL T0375 142 :S 1tyyA 134 :D T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 140 :ACLEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSAEEALRGLYGR 1tyyA 198 :GASHWQDARYYLRDL T0375 216 :GA 1tyyA 213 :GC T0375 218 :VLVCAWAEEGADALGPDG 1tyyA 216 :TTIISLGADGALLITAEG T0375 237 :LLHSDAF 1tyyA 234 :EFHFPAP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRS 1tyyA 241 :RVDVVDTTGAGDAFVGGLLFTLSRANC T0375 272 :VQEALRFGCQVAGKKCGLQGFDGIV 1tyyA 273 :LAEAISNANACGAMAVTAKGAMTAL Number of specific fragments extracted= 14 number of extra gaps= 0 total=3275 Number of alignments=272 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 108 :I 1tyyA 99 :F T0375 109 :LYYDRSLPDVSATDFEKV 1tyyA 102 :LVHPGADTYVSPQDLPPF T0375 129 :TQFKWIHIEGRNA 1tyyA 120 :RQYEWFYFSSIGL T0375 142 :S 1tyyA 134 :D T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 140 :ACLEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSAEEALRGLYGR 1tyyA 198 :GASHWQDARYYLRDL T0375 216 :GA 1tyyA 213 :GC T0375 218 :VLVCAWAEEGADALGPDG 1tyyA 216 :TTIISLGADGALLITAEG T0375 237 :LLHSDAF 1tyyA 234 :EFHFPAP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRS 1tyyA 241 :RVDVVDTTGAGDAFVGGLLFTLSRANC T0375 272 :VQEALRFGCQVAGKKCGLQGFDGIV 1tyyA 273 :LAEAISNANACGAMAVTAKGAMTAL Number of specific fragments extracted= 14 number of extra gaps= 0 total=3289 Number of alignments=273 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 108 :I 1tyyA 99 :F T0375 109 :LYYDRSLPDVSATDFEK 1tyyA 102 :LVHPGADTYVSPQDLPP T0375 128 :LTQFKWIHIEGRNA 1tyyA 119 :FRQYEWFYFSSIGL T0375 142 :S 1tyyA 134 :D T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 140 :ACLEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSAEEALR 1tyyA 198 :GASHWQDARY T0375 211 :GRVRKGA 1tyyA 208 :YLRDLGC T0375 218 :VLVCAWAEEGADALGPDG 1tyyA 216 :TTIISLGADGALLITAEG T0375 237 :LLHSDAF 1tyyA 234 :EFHFPAP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRS 1tyyA 241 :RVDVVDTTGAGDAFVGGLLFTLSRANC T0375 272 :VQEALRFGCQVAGKKCGLQGFDGIV 1tyyA 273 :LAEAISNANACGAMAVTAKGAMTAL Number of specific fragments extracted= 14 number of extra gaps= 0 total=3303 Number of alignments=274 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 108 :ILYYDR 1tyyA 99 :FTYLVH T0375 114 :SLPDVSATDFEK 1tyyA 107 :ADTYVSPQDLPP T0375 128 :LTQFKWIHIE 1tyyA 119 :FRQYEWFYFS T0375 140 :NAS 1tyyA 133 :TDR T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 140 :ACLEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSAEE 1tyyA 198 :GASHWQD T0375 211 :GRVRKGA 1tyyA 208 :YLRDLGC T0375 218 :VLVCAWAEEGADALGPDG 1tyyA 216 :TTIISLGADGALLITAEG T0375 237 :LLHSDAF 1tyyA 234 :EFHFPAP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1tyyA 241 :RVDVVDTTGAGDAFVGGLLFTLSR T0375 269 :GRS 1tyyA 267 :CWD T0375 272 :VQEALRFGCQVAGKKCGLQGFDGIV 1tyyA 273 :LAEAISNANACGAMAVTAKGAMTAL Number of specific fragments extracted= 15 number of extra gaps= 0 total=3318 Number of alignments=275 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 108 :I 1tyyA 99 :F T0375 109 :LYYDRSLPDVSATDFEKVD 1tyyA 102 :LVHPGADTYVSPQDLPPFR T0375 130 :QFKWIHIEGRNA 1tyyA 121 :QYEWFYFSSIGL T0375 142 :S 1tyyA 134 :D T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 140 :ACLEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSAEEALRGLYGR 1tyyA 198 :GASHWQDARYYLRDL T0375 216 :GA 1tyyA 213 :GC T0375 218 :VLVCAWAEEGADALGPDG 1tyyA 216 :TTIISLGADGALLITAEG T0375 237 :LLHSDAF 1tyyA 234 :EFHFPAP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRS 1tyyA 241 :RVDVVDTTGAGDAFVGGLLFTLSRANC T0375 272 :VQEALRFGCQVAGKKCGLQGFDGIV 1tyyA 273 :LAEAISNANACGAMAVTAKGAMTAL Number of specific fragments extracted= 14 number of extra gaps= 0 total=3332 Number of alignments=276 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 108 :I 1tyyA 99 :F T0375 109 :LYYDRSLPDVSATDFEKV 1tyyA 102 :LVHPGADTYVSPQDLPPF T0375 129 :TQFKWIHIEGRNA 1tyyA 120 :RQYEWFYFSSIGL T0375 142 :S 1tyyA 134 :D T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 140 :ACLEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSAEEALRGLYGR 1tyyA 198 :GASHWQDARYYLRDL T0375 216 :GA 1tyyA 213 :GC T0375 218 :VLVCAWAEEGADALGPDG 1tyyA 216 :TTIISLGADGALLITAEG T0375 237 :LLHSDAF 1tyyA 234 :EFHFPAP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRS 1tyyA 241 :RVDVVDTTGAGDAFVGGLLFTLSRANC T0375 272 :VQEALRFGCQVAGKKCGLQGFDGI 1tyyA 273 :LAEAISNANACGAMAVTAKGAMTA Number of specific fragments extracted= 14 number of extra gaps= 0 total=3346 Number of alignments=277 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 108 :I 1tyyA 99 :F T0375 109 :LYYDRSLPDVSATDFEK 1tyyA 102 :LVHPGADTYVSPQDLPP T0375 128 :LTQFKWIHIEGRNA 1tyyA 119 :FRQYEWFYFSSIGL T0375 142 :S 1tyyA 134 :D T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 140 :ACLEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSAEEALR 1tyyA 198 :GASHWQDARY T0375 211 :GRVRKGA 1tyyA 208 :YLRDLGC T0375 218 :VLVCAWAEEGADALGPDG 1tyyA 216 :TTIISLGADGALLITAEG T0375 237 :LLHSDAF 1tyyA 234 :EFHFPAP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRS 1tyyA 241 :RVDVVDTTGAGDAFVGGLLFTLSRANC T0375 272 :VQEALRFGCQVAGKKCGLQGF 1tyyA 273 :LAEAISNANACGAMAVTAKGA Number of specific fragments extracted= 14 number of extra gaps= 0 total=3360 Number of alignments=278 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 108 :ILYYDR 1tyyA 99 :FTYLVH T0375 114 :SLPDVSATDFEK 1tyyA 107 :ADTYVSPQDLPP T0375 128 :LTQFKWIHIE 1tyyA 119 :FRQYEWFYFS T0375 140 :NAS 1tyyA 133 :TDR T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1tyyA 140 :ACLEGARRMREAGGYVLFDVNLRSKMWG T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1tyyA 170 :DEIPELIARSAALASICKVSADELCQL T0375 198 :GFQSAEE 1tyyA 198 :GASHWQD T0375 211 :GRVRKGA 1tyyA 208 :YLRDLGC T0375 218 :VLVCAWAEEGADALGPDG 1tyyA 216 :TTIISLGADGALLITAEG T0375 237 :LLHSDAF 1tyyA 234 :EFHFPAP T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1tyyA 241 :RVDVVDTTGAGDAFVGGLLFTLSR T0375 269 :GRS 1tyyA 267 :CWD T0375 272 :VQEALRFGCQVAGKKCGLQGFDGI 1tyyA 273 :LAEAISNANACGAMAVTAKGAMTA Number of specific fragments extracted= 15 number of extra gaps= 0 total=3375 Number of alignments=279 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)R106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 107 :TILYYDRSLP 1tyyA 99 :FTYLVHPGAD T0375 118 :VSATDFEKVDLTQFKWIHIEGRNASE 1tyyA 109 :TYVSPQDLPPFRQYEWFYFSSIGLTD T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1tyyA 139 :EACLEGARRMREAGGYVLFDVNLRSKMW T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEA 1tyyA 171 :EIPELIARSAALASICKVSADELCQLSGASHWQD T0375 207 :RGLYGRVRKGAVLVCAWAEEGADALGPDGKL 1tyyA 205 :ARYYLRDLGCDTTIISLGADGALLITAEGEF T0375 240 :SDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1tyyA 236 :HFPAPRVDVVDTTGAGDAFVGGLLFTLSR T0375 269 :GRSVQEALRFGCQVAGKKCGLQGFDGIV 1tyyA 270 :HALLAEAISNANACGAMAVTAKGAMTAL Number of specific fragments extracted= 9 number of extra gaps= 0 total=3384 Number of alignments=280 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)R106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 107 :TILYYDR 1tyyA 99 :FTYLVHP T0375 114 :SLPDVSAT 1tyyA 107 :ADTYVSPQ T0375 124 :EKVDLTQFKWIHIEGRNASE 1tyyA 115 :DLPPFRQYEWFYFSSIGLTD T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1tyyA 139 :EACLEGARRMREAGGYVLFDVNLR T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQSAEEA 1tyyA 173 :PELIARSAALASICKVSADELCQLSGASHWQD T0375 207 :RGLYGRVRKGAVLVCAWAEEGADALGPDGK 1tyyA 205 :ARYYLRDLGCDTTIISLGADGALLITAEGE T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1tyyA 235 :FHFPAPRVDVVDTTGAGDAFVGGLLFTLSR T0375 269 :GRSVQEALRFGCQVAGKKCGLQGFDG 1tyyA 270 :HALLAEAISNANACGAMAVTAKGAMT Number of specific fragments extracted= 10 number of extra gaps= 0 total=3394 Number of alignments=281 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)R106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 107 :TILYYDR 1tyyA 99 :FTYLVHP T0375 114 :SLPDVSATDFEK 1tyyA 107 :ADTYVSPQDLPP T0375 128 :LTQFKWIHIEGRNASE 1tyyA 119 :FRQYEWFYFSSIGLTD T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1tyyA 139 :EACLEGARRMREAGGYVLFDVNLRSKMW T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEA 1tyyA 171 :EIPELIARSAALASICKVSADELCQLSGASHWQD T0375 207 :RGLYGRVRKGAVLVCAWAEEGADALGPDG 1tyyA 205 :ARYYLRDLGCDTTIISLGADGALLITAEG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQG 1tyyA 234 :EFHFPAPRVDVVDTTGAGDAFVGGLLFTLSRA T0375 270 :RS 1tyyA 268 :WD T0375 272 :VQEALRFGCQVAGKKCGLQGF 1tyyA 273 :LAEAISNANACGAMAVTAKGA Number of specific fragments extracted= 11 number of extra gaps= 0 total=3405 Number of alignments=282 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)R106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 107 :TILYYDR 1tyyA 99 :FTYLVHP T0375 114 :SLPDVSATDFEK 1tyyA 107 :ADTYVSPQDLPP T0375 128 :LTQFKWIHIEGRNASE 1tyyA 119 :FRQYEWFYFSSIGLTD T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1tyyA 139 :EACLEGARRMREAGGYVLFDVNLRSKMW T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQSAEE 1tyyA 171 :EIPELIARSAALASICKVSADELCQLSGASHWQ T0375 211 :GRVRKGAVLVCAWAEEGADALGPDG 1tyyA 209 :LRDLGCDTTIISLGADGALLITAEG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1tyyA 234 :EFHFPAPRVDVVDTTGAGDAFVGGLLFTLSR T0375 269 :GRS 1tyyA 267 :CWD T0375 272 :VQEALRFGCQVAGKKCGLQGF 1tyyA 273 :LAEAISNANACGAMAVTAKGA Number of specific fragments extracted= 11 number of extra gaps= 0 total=3416 Number of alignments=283 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)R106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 107 :TILYYDRSLP 1tyyA 99 :FTYLVHPGAD T0375 118 :VSATDFEKVDLTQFKWIHIEGRNASE 1tyyA 109 :TYVSPQDLPPFRQYEWFYFSSIGLTD T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1tyyA 139 :EACLEGARRMREAGGYVLFDVNLRSKMW T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEA 1tyyA 171 :EIPELIARSAALASICKVSADELCQLSGASHWQD T0375 207 :RGLYGRVRKGAVLVCAWAEEGADALGPDGKL 1tyyA 205 :ARYYLRDLGCDTTIISLGADGALLITAEGEF T0375 240 :SDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1tyyA 236 :HFPAPRVDVVDTTGAGDAFVGGLLFTLSR T0375 269 :GRSVQEALRFGCQVAGKKCGLQGF 1tyyA 270 :HALLAEAISNANACGAMAVTAKGA Number of specific fragments extracted= 9 number of extra gaps= 0 total=3425 Number of alignments=284 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)R106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 107 :TILYYDR 1tyyA 99 :FTYLVHP T0375 114 :SLPDVSAT 1tyyA 107 :ADTYVSPQ T0375 124 :EKVDLTQFKWIHIEGRNASE 1tyyA 115 :DLPPFRQYEWFYFSSIGLTD T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1tyyA 139 :EACLEGARRMREAGGYVLFDVNLR T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQSAEEA 1tyyA 173 :PELIARSAALASICKVSADELCQLSGASHWQD T0375 207 :RGLYGRVRKGAVLVCAWAEEGADALGPDGK 1tyyA 205 :ARYYLRDLGCDTTIISLGADGALLITAEGE T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1tyyA 235 :FHFPAPRVDVVDTTGAGDAFVGGLLFTLSR T0375 269 :GRSVQEALRFGCQVAGKKCGLQGF 1tyyA 270 :HALLAEAISNANACGAMAVTAKGA Number of specific fragments extracted= 10 number of extra gaps= 0 total=3435 Number of alignments=285 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)R106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 107 :TILYYDR 1tyyA 99 :FTYLVHP T0375 114 :SLPDVSATDFEK 1tyyA 107 :ADTYVSPQDLPP T0375 128 :LTQFKWIHIEGRNASE 1tyyA 119 :FRQYEWFYFSSIGLTD T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1tyyA 139 :EACLEGARRMREAGGYVLFDVNLRSKMW T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEA 1tyyA 171 :EIPELIARSAALASICKVSADELCQLSGASHWQD T0375 207 :RGLYGRVRKGAVLVCAWAEEGADALGPDG 1tyyA 205 :ARYYLRDLGCDTTIISLGADGALLITAEG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQG 1tyyA 234 :EFHFPAPRVDVVDTTGAGDAFVGGLLFTLSRA T0375 270 :RS 1tyyA 268 :WD T0375 272 :VQEALRFGCQVAGKKCGLQG 1tyyA 273 :LAEAISNANACGAMAVTAKG Number of specific fragments extracted= 11 number of extra gaps= 0 total=3446 Number of alignments=286 # 1tyyA read from 1tyyA/merged-a2m # found chain 1tyyA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1tyyA)N5 Warning: unaligning (T0375)I98 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tyyA)S98 Warning: unaligning (T0375)R106 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tyyA)S98 T0375 3 :QILCVGLVVLDVISLVDK 1tyyA 6 :KVWVIGDASVDLVPEKQN T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1tyyA 24 :SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIV T0375 107 :TILYYDR 1tyyA 99 :FTYLVHP T0375 114 :SLPDVSATDFEK 1tyyA 107 :ADTYVSPQDLPP T0375 128 :LTQFKWIHIEGRNASE 1tyyA 119 :FRQYEWFYFSSIGLTD T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1tyyA 139 :EACLEGARRMREAGGYVLFDVNLRSKMW T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQSAEE 1tyyA 171 :EIPELIARSAALASICKVSADELCQLSGASHWQ T0375 211 :GRVRKGAVLVCAWAEEGADALGPDG 1tyyA 209 :LRDLGCDTTIISLGADGALLITAEG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1tyyA 234 :EFHFPAPRVDVVDTTGAGDAFVGGLLFTLSR T0375 269 :GRS 1tyyA 267 :CWD T0375 272 :VQEALRFGCQVAGKKCGLQGF 1tyyA 273 :LAEAISNANACGAMAVTAKGA Number of specific fragments extracted= 11 number of extra gaps= 0 total=3457 Number of alignments=287 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dgmA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1dgmA expands to /projects/compbio/data/pdb/1dgm.pdb.gz 1dgmA:Skipped atom 625, because occupancy 0.500 <= existing 0.500 in 1dgmA Skipped atom 627, because occupancy 0.500 <= existing 0.500 in 1dgmA Skipped atom 821, because occupancy 0.500 <= existing 0.500 in 1dgmA Skipped atom 823, because occupancy 0.500 <= existing 0.500 in 1dgmA Skipped atom 825, because occupancy 0.500 <= existing 0.500 in 1dgmA # T0375 read from 1dgmA/merged-a2m # 1dgmA read from 1dgmA/merged-a2m # adding 1dgmA to template set # found chain 1dgmA in template set Warning: unaligning (T0375)S167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dgmA)T246 T0375 3 :QILCVGLVVLDVISLVDKYPKEDSE 1dgmA 14 :RVFAIGNPILDLVAEVPSSFLDEFF T0375 28 :IRCLSQRWQ 1dgmA 51 :QMRIYSTLD T0375 37 :RGGNASNSCTILSLLG 1dgmA 67 :PGGSALNSVRVVQKLL T0375 54 :PCAFMGSM 1dgmA 87 :SAGYMGAI T0375 62 :APGHVADFVL 1dgmA 108 :DKEGLATRFM T0375 72 :DD 1dgmA 148 :FR T0375 77 :Y 1dgmA 157 :F T0375 78 :SVDLRYTV 1dgmA 160 :GALIFYAT T0375 86 :FQTTGSVPIATVIINEASGSR 1dgmA 169 :YTLTATPKNAFEVAGYAHGIP T0375 107 :TILYYDRSLPDVSATDF 1dgmA 191 :AIFTLNLSAPFCVELYK T0375 143 :EQVKMLQR 1dgmA 208 :DAMQSLLL T0375 155 :NTRQPPEQKIR 1dgmA 218 :NILFGNEEEFA T0375 168 :VEVEKP 1dgmA 247 :ANKEHA T0375 174 :REELFQLFGYGDVVFVSK 1dgmA 272 :TKLVVMTRGHNPVIAAEQ T0375 245 :PP 1dgmA 302 :VP T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1dgmA 309 :KIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS Number of specific fragments extracted= 16 number of extra gaps= 0 total=3473 Number of alignments=288 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set Warning: unaligning (T0375)S167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dgmA)T246 T0375 4 :ILCVGLVVLDVISLVDKYPKEDS 1dgmA 15 :VFAIGNPILDLVAEVPSSFLDEF T0375 27 :EIRCLSQRWQ 1dgmA 50 :EQMRIYSTLD T0375 37 :RGGNASNSCTILSLLG 1dgmA 67 :PGGSALNSVRVVQKLL T0375 54 :PCAFMGSM 1dgmA 87 :SAGYMGAI T0375 62 :APGHVADFVL 1dgmA 108 :DKEGLATRFM T0375 72 :DD 1dgmA 148 :FR T0375 77 :Y 1dgmA 157 :F T0375 78 :SVDLRYTV 1dgmA 160 :GALIFYAT T0375 86 :FQTTGSVPIATVIINEASGSR 1dgmA 169 :YTLTATPKNAFEVAGYAHGIP T0375 107 :TILYYDRSLPDVSATDF 1dgmA 191 :AIFTLNLSAPFCVELYK T0375 143 :EQVKMLQR 1dgmA 208 :DAMQSLLL T0375 155 :NTRQPPEQKIR 1dgmA 218 :NILFGNEEEFA T0375 168 :VEVEKP 1dgmA 247 :ANKEHA T0375 174 :REELFQLFGYGDVVFVSK 1dgmA 272 :TKLVVMTRGHNPVIAAEQ T0375 245 :PP 1dgmA 302 :VP T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1dgmA 309 :KIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 16 number of extra gaps= 0 total=3489 Number of alignments=289 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dgmA)T246 T0375 1 :GSQILCVGLVVLDVISLVD 1dgmA 12 :PMRVFAIGNPILDLVAEVP T0375 20 :KYPKEDSEIRCLSQRWQRGGNASNSCTILSLL 1dgmA 50 :EQMRIYSTLDQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQ 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAP T0375 89 :TGSVPIATVIINEA 1dgmA 121 :GQSTGVCAVLINEK T0375 105 :SRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1dgmA 135 :ERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLT T0375 146 :KMLQRIDAHNTRQPPEQKIRVSVEVEKP 1dgmA 173 :ATPKNAFEVAGYAHGIPNAIFTLNLSAP T0375 174 :REELFQLFGYGDVVFVSKDVAKHL 1dgmA 207 :KDAMQSLLLHTNILFGNEEEFAHL T0375 198 :G 1dgmA 232 :K T0375 200 :QSAEEALR 1dgmA 247 :ANKEHAVE T0375 208 :GLYGRVRK 1dgmA 266 :GQNTGATK T0375 218 :VLVCAWAEEGADALGPDGK 1dgmA 274 :LVVMTRGHNPVIAAEQTAD T0375 237 :LLHSDAFPP 1dgmA 297 :VHEVGVPVV T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1dgmA 308 :EKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 13 number of extra gaps= 0 total=3502 Number of alignments=290 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dgmA)T246 T0375 1 :GSQILCVGLVVLDVISLVD 1dgmA 12 :PMRVFAIGNPILDLVAEVP T0375 20 :KYPKEDSEIRCLSQRWQRGGNASNSCTILSLL 1dgmA 50 :EQMRIYSTLDQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQ 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAP T0375 89 :TGSVPIATVIINEA 1dgmA 121 :GQSTGVCAVLINEK T0375 105 :SRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1dgmA 135 :ERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLT T0375 146 :KMLQRIDAHNTRQPPEQKIRVSVEVEKP 1dgmA 173 :ATPKNAFEVAGYAHGIPNAIFTLNLSAP T0375 174 :REELFQLFGYGDVVFVSKDVAKHL 1dgmA 207 :KDAMQSLLLHTNILFGNEEEFAHL T0375 198 :G 1dgmA 232 :K T0375 200 :QSAEEALR 1dgmA 247 :ANKEHAVE T0375 208 :GLYGRVRK 1dgmA 266 :GQNTGATK T0375 218 :VLVCAWAEEGADALGPDGK 1dgmA 274 :LVVMTRGHNPVIAAEQTAD T0375 237 :LLHSDAFPP 1dgmA 297 :VHEVGVPVV T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDG 1dgmA 308 :EKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSL T0375 295 :IV 1dgmA 362 :PC Number of specific fragments extracted= 14 number of extra gaps= 0 total=3516 Number of alignments=291 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dgmA)T246 T0375 3 :QILCVGLVVLDVISLVD 1dgmA 14 :RVFAIGNPILDLVAEVP T0375 20 :KYPKEDSEIRCLSQRWQRGGNASNSCTILSLL 1dgmA 50 :EQMRIYSTLDQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQ 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAP T0375 89 :TGSVPIATVIINEA 1dgmA 121 :GQSTGVCAVLINEK T0375 105 :SRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1dgmA 135 :ERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLT T0375 146 :KMLQRIDAHNTRQPPEQKIRVSVEVEKP 1dgmA 173 :ATPKNAFEVAGYAHGIPNAIFTLNLSAP T0375 174 :REELFQLFGYGDVVFVSKDVAKHL 1dgmA 207 :KDAMQSLLLHTNILFGNEEEFAHL T0375 198 :G 1dgmA 232 :K T0375 200 :QSAEEALR 1dgmA 247 :ANKEHAVE T0375 208 :GLYGRVRK 1dgmA 266 :GQNTGATK T0375 218 :VLVCAWAEEGADALGPDGK 1dgmA 274 :LVVMTRGHNPVIAAEQTAD T0375 237 :LLHSDAFPP 1dgmA 297 :VHEVGVPVV T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 1dgmA 308 :EKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVG Number of specific fragments extracted= 13 number of extra gaps= 0 total=3529 Number of alignments=292 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1dgmA)T246 T0375 3 :QILCVGLVVLDVISLVD 1dgmA 14 :RVFAIGNPILDLVAEVP T0375 20 :KYPKEDSEIRCLSQRWQRGGNASNSCTILSLL 1dgmA 50 :EQMRIYSTLDQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQ 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAP T0375 89 :TGSVPIATVIINEA 1dgmA 121 :GQSTGVCAVLINEK T0375 105 :SRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1dgmA 135 :ERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLT T0375 146 :KMLQRIDAHNTRQPPEQKIRVSVEVEKP 1dgmA 173 :ATPKNAFEVAGYAHGIPNAIFTLNLSAP T0375 174 :REELFQLFGYGDVVFVSKDVAKHL 1dgmA 207 :KDAMQSLLLHTNILFGNEEEFAHL T0375 198 :G 1dgmA 232 :K T0375 200 :QSAEEALR 1dgmA 247 :ANKEHAVE T0375 208 :GLYGRVRK 1dgmA 266 :GQNTGATK T0375 218 :VLVCAWAEEGADALGPDGK 1dgmA 274 :LVVMTRGHNPVIAAEQTAD T0375 237 :LLHSDAFPP 1dgmA 297 :VHEVGVPVV T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 1dgmA 308 :EKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVG Number of specific fragments extracted= 13 number of extra gaps= 0 total=3542 Number of alignments=293 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1dgmA 309 :KIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=3543 Number of alignments=294 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAG 1dgmA 307 :AEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=3544 Number of alignments=295 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEI 1dgmA 12 :PMRVFAIGNPILDLVAEVPSSFLDEFFL T0375 29 :RCLSQRWQRGGNASNSCTILSLL 1dgmA 59 :DQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 1dgmA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1dgmA 133 :EKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTAT T0375 145 :VKMLQRI 1dgmA 176 :KNAFEVA T0375 152 :DAHNTR 1dgmA 184 :YAHGIP T0375 158 :QPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 191 :AIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 1dgmA 232 :KV T0375 200 :QSAEEALRGLYGRV 1dgmA 257 :TGALRLLTAGQNTG T0375 215 :KGAVLVCAWAEEGADALG 1dgmA 271 :ATKLVVMTRGHNPVIAAE T0375 233 :PDGKLL 1dgmA 291 :ADGTVV T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1dgmA 301 :GVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS T0375 294 :GI 1dgmA 357 :SF Number of specific fragments extracted= 14 number of extra gaps= 0 total=3558 Number of alignments=296 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEI 1dgmA 12 :PMRVFAIGNPILDLVAEVPSSFLDEFFL T0375 29 :RCLSQRWQRGGNASNSCTILSLL 1dgmA 59 :DQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 1dgmA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1dgmA 133 :EKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTAT T0375 145 :VKMLQR 1dgmA 179 :FEVAGY T0375 153 :AHNTR 1dgmA 185 :AHGIP T0375 158 :QPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 191 :AIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 1dgmA 232 :KV T0375 200 :QSAEEALRGLYGRV 1dgmA 257 :TGALRLLTAGQNTG T0375 215 :KGAVLVCAWAEEGADALG 1dgmA 271 :ATKLVVMTRGHNPVIAAE T0375 233 :PDGKLL 1dgmA 291 :ADGTVV T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1dgmA 301 :GVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS T0375 294 :GI 1dgmA 357 :SF Number of specific fragments extracted= 14 number of extra gaps= 0 total=3572 Number of alignments=297 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEI 1dgmA 13 :MRVFAIGNPILDLVAEVPSSFLDEFFL T0375 29 :RCLSQRWQRGGNASNSCTILSLL 1dgmA 59 :DQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 1dgmA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1dgmA 133 :EKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTAT T0375 145 :VKMLQRIDA 1dgmA 179 :FEVAGYAHG T0375 154 :HNTRQPPEQK 1dgmA 189 :PNAIFTLNLS T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 1dgmA 232 :KV T0375 200 :QSAEEALR 1dgmA 250 :EHAVEVCT T0375 208 :GLYGRVRK 1dgmA 261 :RLLTAGQN T0375 216 :GAVLVCAWAEEGADAL 1dgmA 272 :TKLVVMTRGHNPVIAA T0375 232 :GPDGKLLHSDAF 1dgmA 290 :TADGTVVVHEVG T0375 244 :PPP 1dgmA 303 :PVV T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1dgmA 309 :KIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS T0375 294 :GI 1dgmA 357 :SF Number of specific fragments extracted= 16 number of extra gaps= 0 total=3588 Number of alignments=298 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 2 :SQILCVGLVVLDVISLVD 1dgmA 13 :MRVFAIGNPILDLVAEVP T0375 22 :PKEDSEI 1dgmA 38 :FLKRGDA T0375 30 :CLSQRWQRGGNASNSCTILSLL 1dgmA 60 :QFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 1dgmA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 1dgmA 133 :EKERTLCTHLGACGSFR T0375 123 :FE 1dgmA 150 :LP T0375 125 :KVDLTQFKWIHIEGR 1dgmA 155 :TTFASGALIFYATAY T0375 140 :NASEQVKMLQRIDAH 1dgmA 174 :TPKNAFEVAGYAHGI T0375 155 :NTRQPPEQK 1dgmA 190 :NAIFTLNLS T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 1dgmA 235 :NL T0375 200 :QSAEEALRGLYGR 1dgmA 250 :EHAVEVCTGALRL T0375 216 :GAVLVCAWAEEGADAL 1dgmA 272 :TKLVVMTRGHNPVIAA T0375 232 :GPDGKLLHS 1dgmA 290 :TADGTVVVH T0375 241 :DAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1dgmA 303 :PVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS T0375 294 :GI 1dgmA 357 :SF Number of specific fragments extracted= 17 number of extra gaps= 0 total=3605 Number of alignments=299 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEI 1dgmA 12 :PMRVFAIGNPILDLVAEVPSSFLDEFFL T0375 29 :RCLSQRWQRGGNASNSCTILSLL 1dgmA 59 :DQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 1dgmA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1dgmA 133 :EKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTAT T0375 145 :VKMLQRI 1dgmA 176 :KNAFEVA T0375 152 :DAHNTR 1dgmA 184 :YAHGIP T0375 158 :QPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 191 :AIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 1dgmA 232 :KV T0375 200 :QSAEEALRGLYGRV 1dgmA 257 :TGALRLLTAGQNTG T0375 215 :KGAVLVCAWAEEGADALG 1dgmA 271 :ATKLVVMTRGHNPVIAAE T0375 233 :PDGKLL 1dgmA 291 :ADGTVV T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1dgmA 301 :GVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 13 number of extra gaps= 0 total=3618 Number of alignments=300 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEI 1dgmA 13 :MRVFAIGNPILDLVAEVPSSFLDEFFL T0375 29 :RCLSQRWQRGGNASNSCTILSLL 1dgmA 59 :DQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 1dgmA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1dgmA 133 :EKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTAT T0375 145 :VKMLQR 1dgmA 179 :FEVAGY T0375 153 :AHNTR 1dgmA 185 :AHGIP T0375 158 :QPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 191 :AIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 1dgmA 232 :KV T0375 200 :QSAEEALRGLYGRV 1dgmA 257 :TGALRLLTAGQNTG T0375 215 :KGAVLVCAWAEEGADALG 1dgmA 271 :ATKLVVMTRGHNPVIAAE T0375 233 :PDGKLL 1dgmA 291 :ADGTVV T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1dgmA 301 :GVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 13 number of extra gaps= 0 total=3631 Number of alignments=301 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEI 1dgmA 12 :PMRVFAIGNPILDLVAEVPSSFLDEFFL T0375 29 :RCLSQRWQRGGNASNSCTILSLL 1dgmA 59 :DQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 1dgmA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1dgmA 133 :EKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTAT T0375 145 :VKMLQRIDA 1dgmA 179 :FEVAGYAHG T0375 154 :HNTRQPPEQK 1dgmA 189 :PNAIFTLNLS T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 1dgmA 232 :KV T0375 200 :QSAEEALR 1dgmA 250 :EHAVEVCT T0375 208 :GLYGRVRK 1dgmA 261 :RLLTAGQN T0375 216 :GAVLVCAWAEEGADAL 1dgmA 272 :TKLVVMTRGHNPVIAA T0375 232 :GPDGKLLHSDAF 1dgmA 290 :TADGTVVVHEVG T0375 244 :PPP 1dgmA 303 :PVV T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1dgmA 309 :KIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS Number of specific fragments extracted= 15 number of extra gaps= 0 total=3646 Number of alignments=302 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 1 :GSQILCVGLVVLDVISLVD 1dgmA 12 :PMRVFAIGNPILDLVAEVP T0375 22 :PKEDSEI 1dgmA 38 :FLKRGDA T0375 30 :CLSQRWQRGGNASNSCTILSLL 1dgmA 60 :QFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 1dgmA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 1dgmA 133 :EKERTLCTHLGACGSFR T0375 123 :FE 1dgmA 150 :LP T0375 125 :KVDLTQFKWIHIEGR 1dgmA 155 :TTFASGALIFYATAY T0375 140 :NASEQVKMLQRIDAH 1dgmA 174 :TPKNAFEVAGYAHGI T0375 155 :NTRQPPEQK 1dgmA 190 :NAIFTLNLS T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 1dgmA 235 :NL T0375 200 :QSAEEALRGLYGR 1dgmA 250 :EHAVEVCTGALRL T0375 216 :GAVLVCAWAEEGADAL 1dgmA 272 :TKLVVMTRGHNPVIAA T0375 232 :GPDGKLLHS 1dgmA 290 :TADGTVVVH T0375 241 :DAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1dgmA 303 :PVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS Number of specific fragments extracted= 16 number of extra gaps= 0 total=3662 Number of alignments=303 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQR 1dgmA 12 :PMRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLAT T0375 38 :GGNASNSCTILSLL 1dgmA 68 :GGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVII 1dgmA 120 :PGQSTGVCAVLI T0375 102 :ASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNA 1dgmA 132 :NEKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTL T0375 142 :SEQVKMLQRID 1dgmA 173 :ATPKNAFEVAG T0375 153 :AHNTR 1dgmA 185 :AHGIP T0375 158 :QPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 191 :AIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GFQ 1dgmA 232 :KVH T0375 201 :SAEEALRGLYGRVRK 1dgmA 248 :NKEHAVEVCTGALRL T0375 216 :GA 1dgmA 270 :GA T0375 218 :VLVCAWAEEGADALGPDG 1dgmA 274 :LVVMTRGHNPVIAAEQTA T0375 236 :KLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1dgmA 298 :HEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 13 number of extra gaps= 0 total=3675 Number of alignments=304 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQR 1dgmA 14 :RVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLAT T0375 38 :GGNASNSCTILSLL 1dgmA 68 :GGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTV 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMV T0375 87 :QTTGSVPIATVII 1dgmA 119 :APGQSTGVCAVLI T0375 102 :ASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNA 1dgmA 132 :NEKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTL T0375 142 :SEQVKMLQRID 1dgmA 173 :ATPKNAFEVAG T0375 153 :AHNTR 1dgmA 185 :AHGIP T0375 158 :QPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 191 :AIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GFQ 1dgmA 232 :KVH T0375 202 :AEEALRGLYGRVRK 1dgmA 252 :AVEVCTGALRLLTA T0375 216 :GA 1dgmA 270 :GA T0375 218 :VLVCAWAEEGADALGP 1dgmA 274 :LVVMTRGHNPVIAAEQ T0375 234 :DGKLL 1dgmA 292 :DGTVV T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1dgmA 301 :GVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 14 number of extra gaps= 0 total=3689 Number of alignments=305 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set Warning: unaligning (T0375)Q200 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dgmA)T246 T0375 3 :QILCVGLVVLDVISLVDKY 1dgmA 14 :RVFAIGNPILDLVAEVPSS T0375 22 :PKEDSEIRCL 1dgmA 39 :LKRGDATLAT T0375 32 :SQRWQRGGNASNSCTILSLL 1dgmA 62 :NPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 1dgmA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 1dgmA 133 :EKERTLCTHLGACGSFR T0375 120 :ATDFEKV 1dgmA 151 :PEDWTTF T0375 128 :LTQFKWIHIEGRNAS 1dgmA 158 :ASGALIFYATAYTLT T0375 143 :EQVKMLQRIDA 1dgmA 177 :NAFEVAGYAHG T0375 154 :HNTRQPPEQKIRVSV 1dgmA 189 :PNAIFTLNLSAPFCV T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 204 :ELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 1dgmA 235 :NL T0375 201 :SAEEALRGL 1dgmA 248 :NKEHAVEVC T0375 210 :YGRVRK 1dgmA 260 :LRLLTA T0375 216 :GA 1dgmA 270 :GA T0375 218 :VLVCAWAEEGADAL 1dgmA 274 :LVVMTRGHNPVIAA T0375 232 :GPDGKLLHSDAFP 1dgmA 290 :TADGTVVVHEVGV T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 1dgmA 307 :AEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVG T0375 292 :FDGIV 1dgmA 357 :SFTSL Number of specific fragments extracted= 19 number of extra gaps= 0 total=3708 Number of alignments=306 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set Warning: unaligning (T0375)Q200 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dgmA)T246 T0375 3 :QILCVGLVVLDVISLVD 1dgmA 14 :RVFAIGNPILDLVAEVP T0375 21 :YPKEDSEIRCL 1dgmA 38 :FLKRGDATLAT T0375 32 :SQRWQRGGNASNSCTILSLL 1dgmA 62 :NPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 1dgmA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 1dgmA 133 :EKERTLCTHLGACGSFR T0375 120 :ATDFEK 1dgmA 151 :PEDWTT T0375 127 :DLTQFKWIHIEGRNAS 1dgmA 157 :FASGALIFYATAYTLT T0375 143 :EQVKMLQRIDAH 1dgmA 177 :NAFEVAGYAHGI T0375 155 :NTRQPPEQKIRVSV 1dgmA 190 :NAIFTLNLSAPFCV T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 204 :ELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 1dgmA 235 :NL T0375 201 :SAEEALRGLYGRVR 1dgmA 248 :NKEHAVEVCTGALR T0375 215 :KG 1dgmA 265 :AG T0375 217 :A 1dgmA 272 :T T0375 218 :VLVCAWAEEGADAL 1dgmA 274 :LVVMTRGHNPVIAA T0375 232 :GPDGKLL 1dgmA 290 :TADGTVV T0375 239 :HSDAFP 1dgmA 299 :EVGVPV T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1dgmA 307 :AEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF T0375 293 :DGIV 1dgmA 358 :FTSL Number of specific fragments extracted= 20 number of extra gaps= 0 total=3728 Number of alignments=307 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQR 1dgmA 12 :PMRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLAT T0375 38 :GGNASNSCTILSLL 1dgmA 68 :GGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVII 1dgmA 120 :PGQSTGVCAVLI T0375 102 :ASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNA 1dgmA 132 :NEKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTL T0375 142 :SEQVKMLQRID 1dgmA 173 :ATPKNAFEVAG T0375 153 :AHNTR 1dgmA 185 :AHGIP T0375 158 :QPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 191 :AIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GFQ 1dgmA 232 :KVH T0375 201 :SAEEALRGLYGRVRK 1dgmA 248 :NKEHAVEVCTGALRL T0375 216 :GA 1dgmA 270 :GA T0375 218 :VLVCAWAEEGADALGPDG 1dgmA 274 :LVVMTRGHNPVIAAEQTA T0375 236 :KLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1dgmA 298 :HEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 13 number of extra gaps= 0 total=3741 Number of alignments=308 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQR 1dgmA 13 :MRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLAT T0375 38 :GGNASNSCTILSLL 1dgmA 68 :GGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTV 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMV T0375 87 :QTTGSVPIATVII 1dgmA 119 :APGQSTGVCAVLI T0375 102 :ASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNA 1dgmA 132 :NEKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTL T0375 142 :SEQVKMLQRID 1dgmA 173 :ATPKNAFEVAG T0375 153 :AHNTR 1dgmA 185 :AHGIP T0375 158 :QPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 191 :AIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GFQ 1dgmA 232 :KVH T0375 202 :AEEALRGLYGRVRK 1dgmA 252 :AVEVCTGALRLLTA T0375 216 :GA 1dgmA 270 :GA T0375 218 :VLVCAWAEEGADALGP 1dgmA 274 :LVVMTRGHNPVIAAEQ T0375 234 :DGKLL 1dgmA 292 :DGTVV T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1dgmA 301 :GVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 14 number of extra gaps= 0 total=3755 Number of alignments=309 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set Warning: unaligning (T0375)Q200 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dgmA)T246 T0375 1 :GSQILCVGLVVLDVISLVDKY 1dgmA 12 :PMRVFAIGNPILDLVAEVPSS T0375 22 :PKEDSEIRCL 1dgmA 39 :LKRGDATLAT T0375 32 :SQRWQRGGNASNSCTILSLL 1dgmA 62 :NPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 1dgmA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 1dgmA 133 :EKERTLCTHLGACGSFR T0375 120 :ATDFEKV 1dgmA 151 :PEDWTTF T0375 128 :LTQFKWIHIEGRNAS 1dgmA 158 :ASGALIFYATAYTLT T0375 143 :EQVKMLQRIDA 1dgmA 177 :NAFEVAGYAHG T0375 154 :HNTRQPPEQKIRVSV 1dgmA 189 :PNAIFTLNLSAPFCV T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 204 :ELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 1dgmA 235 :NL T0375 201 :SAEEALRGL 1dgmA 248 :NKEHAVEVC T0375 210 :YGRVRK 1dgmA 260 :LRLLTA T0375 216 :GA 1dgmA 270 :GA T0375 218 :VLVCAWAEEGADAL 1dgmA 274 :LVVMTRGHNPVIAA T0375 232 :GPDGKLLHSDAFP 1dgmA 290 :TADGTVVVHEVGV T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1dgmA 307 :AEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 18 number of extra gaps= 0 total=3773 Number of alignments=310 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set Warning: unaligning (T0375)Q200 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dgmA)T246 T0375 1 :GSQILCVGLVVLDVISLVD 1dgmA 12 :PMRVFAIGNPILDLVAEVP T0375 21 :YPKEDSEIRCL 1dgmA 38 :FLKRGDATLAT T0375 32 :SQRWQRGGNASNSCTILSLL 1dgmA 62 :NPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 1dgmA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 1dgmA 133 :EKERTLCTHLGACGSFR T0375 120 :ATDFEK 1dgmA 151 :PEDWTT T0375 127 :DLTQFKWIHIEGRNAS 1dgmA 157 :FASGALIFYATAYTLT T0375 143 :EQVKMLQRIDAH 1dgmA 177 :NAFEVAGYAHGI T0375 155 :NTRQPPEQKIRVSV 1dgmA 190 :NAIFTLNLSAPFCV T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1dgmA 204 :ELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 1dgmA 235 :NL T0375 201 :SAEEALRGLYGRVR 1dgmA 248 :NKEHAVEVCTGALR T0375 215 :KG 1dgmA 265 :AG T0375 217 :A 1dgmA 272 :T T0375 218 :VLVCAWAEEGADAL 1dgmA 274 :LVVMTRGHNPVIAA T0375 232 :GPDGKLL 1dgmA 290 :TADGTVV T0375 239 :HSDAFP 1dgmA 299 :EVGVPV T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1dgmA 307 :AEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS Number of specific fragments extracted= 19 number of extra gaps= 0 total=3792 Number of alignments=311 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQ 1dgmA 13 :MRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLA T0375 37 :RGGNASNSCTILSLL 1dgmA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVI 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLI T0375 101 :EASGSRTILYYDRSLP 1dgmA 132 :NEKERTLCTHLGACGS T0375 118 :VSATDFEKVDLTQFKWIHIEGRNASE 1dgmA 148 :FRLPEDWTTFASGALIFYATAYTLTA T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1dgmA 177 :NAFEVAGYAHGIPNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKV T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1dgmA 257 :TGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTA T0375 236 :KLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1dgmA 298 :HEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 8 number of extra gaps= 0 total=3800 Number of alignments=312 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQ 1dgmA 13 :MRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLA T0375 37 :RGGNASNSCTILSLL 1dgmA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVL T0375 99 :I 1dgmA 131 :I T0375 101 :EASGSRTILYYDRSLPDVSA 1dgmA 132 :NEKERTLCTHLGACGSFRLP T0375 122 :DFEKVDLTQFKWIHIEGRNASE 1dgmA 152 :EDWTTFASGALIFYATAYTLTA T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1dgmA 177 :NAFEVAGYAHGIPNAIFTLNLSAP T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1dgmA 207 :KDAMQSLLLHTNILFGNEEEFAHLAKV T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1dgmA 257 :TGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTA T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 1dgmA 300 :VGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLS Number of specific fragments extracted= 10 number of extra gaps= 0 total=3810 Number of alignments=313 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 2 :SQILCVGLVVLDVISLVDK 1dgmA 13 :MRVFAIGNPILDLVAEVPS T0375 21 :YPKEDSEIRCLSQRWQ 1dgmA 38 :FLKRGDATLATPEQMR T0375 37 :RGGNASNSCTILSLL 1dgmA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIINEA 1dgmA 120 :PGQSTGVCAVLINEK T0375 104 :GSRTILYYDRSLPDVS 1dgmA 135 :ERTLCTHLGACGSFRL T0375 121 :TDFEKVDLTQFKWIHIEGRNASE 1dgmA 151 :PEDWTTFASGALIFYATAYTLTA T0375 144 :QVKMLQRIDAHN 1dgmA 176 :KNAFEVAGYAHG T0375 156 :TRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1dgmA 189 :PNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKV T0375 205 :A 1dgmA 257 :T T0375 207 :RGLYGRVRK 1dgmA 258 :GALRLLTAG T0375 216 :GAVLVCAWAEEGADALG 1dgmA 272 :TKLVVMTRGHNPVIAAE T0375 233 :PDG 1dgmA 291 :ADG T0375 236 :KLLHSDAFPPPR 1dgmA 295 :VVVHEVGVPVVA T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 1dgmA 310 :IVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLS Number of specific fragments extracted= 15 number of extra gaps= 0 total=3825 Number of alignments=314 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 2 :SQILCVGLVVLDVISLVDK 1dgmA 13 :MRVFAIGNPILDLVAEVPS T0375 21 :YPKEDSEIRCLSQRWQ 1dgmA 38 :FLKRGDATLATPEQMR T0375 37 :RGGNASNSCTILSLL 1dgmA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIINEASGSRTILYYDRSLPDVSATDF 1dgmA 120 :PGQSTGVCAVLINEKERTLCTHLGACGSFRLPEDWT T0375 126 :VDLTQFKWIHIEGRNASE 1dgmA 156 :TFASGALIFYATAYTLTA T0375 144 :QVKMLQRIDAHN 1dgmA 176 :KNAFEVAGYAHG T0375 156 :TRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1dgmA 189 :PNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKV T0375 201 :SAEE 1dgmA 247 :ANKE T0375 205 :ALRGLYGRVRK 1dgmA 256 :CTGALRLLTAG T0375 216 :GAVLVCAWAEEGADALG 1dgmA 272 :TKLVVMTRGHNPVIAAE T0375 233 :PDGKLLHSDAFPPPR 1dgmA 292 :DGTVVVHEVGVPVVA T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1dgmA 310 :IVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS T0375 295 :IV 1dgmA 362 :PC Number of specific fragments extracted= 14 number of extra gaps= 0 total=3839 Number of alignments=315 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQ 1dgmA 14 :RVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLA T0375 37 :RGGNASNSCTILSLL 1dgmA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVI 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLI T0375 101 :EASGSRTILYYDRSLP 1dgmA 132 :NEKERTLCTHLGACGS T0375 118 :VSATDFEKVDLTQFKWIHIEGRNASE 1dgmA 148 :FRLPEDWTTFASGALIFYATAYTLTA T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1dgmA 177 :NAFEVAGYAHGIPNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKV T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1dgmA 257 :TGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTA T0375 236 :KLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1dgmA 298 :HEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 8 number of extra gaps= 0 total=3847 Number of alignments=316 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQ 1dgmA 14 :RVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLA T0375 37 :RGGNASNSCTILSLL 1dgmA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVL T0375 99 :I 1dgmA 131 :I T0375 101 :EASGSRTILYYDRSLPDVSA 1dgmA 132 :NEKERTLCTHLGACGSFRLP T0375 122 :DFEKVDLTQFKWIHIEGRNASE 1dgmA 152 :EDWTTFASGALIFYATAYTLTA T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1dgmA 177 :NAFEVAGYAHGIPNAIFTLNLSAP T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1dgmA 207 :KDAMQSLLLHTNILFGNEEEFAHLAKV T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1dgmA 257 :TGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTA T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1dgmA 300 :VGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 10 number of extra gaps= 0 total=3857 Number of alignments=317 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 2 :SQILCVGLVVLDVISLVDK 1dgmA 13 :MRVFAIGNPILDLVAEVPS T0375 21 :YPKEDSEIRCLSQRWQ 1dgmA 38 :FLKRGDATLATPEQMR T0375 37 :RGGNASNSCTILSLL 1dgmA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIINEA 1dgmA 120 :PGQSTGVCAVLINEK T0375 104 :GSRTILYYDRSLPDVS 1dgmA 135 :ERTLCTHLGACGSFRL T0375 121 :TDFEKVDLTQFKWIHIEGRNASE 1dgmA 151 :PEDWTTFASGALIFYATAYTLTA T0375 144 :QVKMLQRIDAHN 1dgmA 176 :KNAFEVAGYAHG T0375 156 :TRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1dgmA 189 :PNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKV T0375 205 :A 1dgmA 257 :T T0375 207 :RGLYGRVRK 1dgmA 258 :GALRLLTAG T0375 216 :GAVLVCAWAEEGADALG 1dgmA 272 :TKLVVMTRGHNPVIAAE T0375 233 :PDG 1dgmA 291 :ADG T0375 236 :KLLHSDAFPPPR 1dgmA 295 :VVVHEVGVPVVA T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1dgmA 310 :IVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 15 number of extra gaps= 0 total=3872 Number of alignments=318 # 1dgmA read from 1dgmA/merged-a2m # found chain 1dgmA in template set T0375 2 :SQILCVGLVVLDVISLVDK 1dgmA 13 :MRVFAIGNPILDLVAEVPS T0375 21 :YPKEDSEIRCLSQRWQ 1dgmA 38 :FLKRGDATLATPEQMR T0375 37 :RGGNASNSCTILSLL 1dgmA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 1dgmA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIINEASGSRTILYYDRSLPDVSATDF 1dgmA 120 :PGQSTGVCAVLINEKERTLCTHLGACGSFRLPEDWT T0375 126 :VDLTQFKWIHIEGRNASE 1dgmA 156 :TFASGALIFYATAYTLTA T0375 144 :QVKMLQRIDAHN 1dgmA 176 :KNAFEVAGYAHG T0375 156 :TRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1dgmA 189 :PNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKV T0375 201 :SAEE 1dgmA 247 :ANKE T0375 205 :ALRGLYGRVRK 1dgmA 256 :CTGALRLLTAG T0375 216 :GAVLVCAWAEEGADALG 1dgmA 272 :TKLVVMTRGHNPVIAAE T0375 233 :PDGKLLHSDAFPPPR 1dgmA 292 :DGTVVVHEVGVPVVA T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1dgmA 310 :IVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS Number of specific fragments extracted= 13 number of extra gaps= 0 total=3885 Number of alignments=319 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rkd/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0375 read from 1rkd/merged-a2m # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYT 1rkd 4 :AGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPV T0375 85 :VFQTTG 1rkd 128 :QRERIA T0375 94 :IATVIINEAS 1rkd 134 :NASALLMQLE T0375 139 :RNASEQVKML 1rkd 171 :RELPDELLAL T0375 154 :HNTRQPP 1rkd 182 :DIITPNE T0375 183 :YGDVVFVS 1rkd 226 :SRGVWASV T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKC 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAV Number of specific fragments extracted= 7 number of extra gaps= 0 total=3892 Number of alignments=320 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 11 :VLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYT 1rkd 14 :NADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPV T0375 85 :VFQTTG 1rkd 128 :QRERIA T0375 94 :IATVIINEAS 1rkd 134 :NASALLMQLE T0375 139 :RNASEQVKML 1rkd 171 :RELPDELLAL T0375 154 :HNTRQPP 1rkd 182 :DIITPNE T0375 183 :YGDVVFVS 1rkd 226 :SRGVWASV T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAG 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAA Number of specific fragments extracted= 7 number of extra gaps= 0 total=3899 Number of alignments=321 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVI 1rkd 4 :AGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIF T0375 100 :NEASGSRTILYYDRSLPDVSATDFEKVD 1rkd 102 :VNGEGENVIGIHAGANAALSPALVEAQR T0375 131 :FKWIHIEGRNASE 1rkd 130 :ERIANASALLMQL T0375 146 :KMLQRIDAHNTRQPPEQKIRVSVEV 1rkd 143 :ESPLESVMAAAKIAHQNKTIVALNP T0375 172 :KPREELFQ 1rkd 168 :APARELPD T0375 180 :LFGYGDVVFVS 1rkd 177 :LLALVDIITPN T0375 191 :KDVAKHLG 1rkd 189 :TEAEKLTG T0375 199 :FQSAEEALRGLYGRV 1rkd 202 :DEDAAKAAQVLHEKG T0375 216 :GAVLVCAWAEEGADALGPDG 1rkd 217 :IRTVLITLGSRGVWASVNGE T0375 237 :LLHSDAFPPP 1rkd 237 :GQRVPGFRVQ T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 1rkd 247 :AVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKG T0375 292 :FDGIV 1rkd 293 :PSVPW Number of specific fragments extracted= 12 number of extra gaps= 0 total=3911 Number of alignments=322 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVI 1rkd 4 :AGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIF T0375 100 :NEASGSRTILYYDRSLPDVSATDFEKVD 1rkd 102 :VNGEGENVIGIHAGANAALSPALVEAQR T0375 131 :FKWIHIEGRNASE 1rkd 130 :ERIANASALLMQL T0375 146 :KMLQRIDAHNTRQPPEQKIRVSVEV 1rkd 143 :ESPLESVMAAAKIAHQNKTIVALNP T0375 172 :KPREELFQ 1rkd 168 :APARELPD T0375 180 :LFGYGDVVFVSK 1rkd 177 :LLALVDIITPNE T0375 192 :DVAKHLG 1rkd 190 :EAEKLTG T0375 199 :FQSAEEALRGLYGRV 1rkd 202 :DEDAAKAAQVLHEKG T0375 216 :GAVLVCAWAEEGADALGPDG 1rkd 217 :IRTVLITLGSRGVWASVNGE T0375 237 :LLHSDAFPPP 1rkd 237 :GQRVPGFRVQ T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 1rkd 247 :AVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKG T0375 292 :FDGIV 1rkd 293 :PSVPW Number of specific fragments extracted= 12 number of extra gaps= 0 total=3923 Number of alignments=323 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 4 :ILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVI 1rkd 7 :LVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIF T0375 100 :NEASGSRTILYYDRSLPDVSATDFEKVD 1rkd 102 :VNGEGENVIGIHAGANAALSPALVEAQR T0375 131 :FKWIHIEGRNASE 1rkd 130 :ERIANASALLMQL T0375 146 :KMLQRIDAHNTRQPPEQKIRVSVEV 1rkd 143 :ESPLESVMAAAKIAHQNKTIVALNP T0375 172 :KPREELFQ 1rkd 168 :APARELPD T0375 180 :LFGYGDVVFVS 1rkd 177 :LLALVDIITPN T0375 191 :KDVAKHLG 1rkd 189 :TEAEKLTG T0375 199 :FQSAEEALRGLYGRV 1rkd 202 :DEDAAKAAQVLHEKG T0375 216 :GAVLVCAWAEEGADALGPDG 1rkd 217 :IRTVLITLGSRGVWASVNGE T0375 237 :LLHSDAFPPP 1rkd 237 :GQRVPGFRVQ T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 1rkd 247 :AVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKG Number of specific fragments extracted= 11 number of extra gaps= 0 total=3934 Number of alignments=324 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 4 :ILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVI 1rkd 7 :LVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIF T0375 100 :NEASGSRTILYYDRSLPDVSATDFEKVD 1rkd 102 :VNGEGENVIGIHAGANAALSPALVEAQR T0375 131 :FKWIHIEGRNASE 1rkd 130 :ERIANASALLMQL T0375 146 :KMLQRIDAHNTRQPPEQKIRVSVEV 1rkd 143 :ESPLESVMAAAKIAHQNKTIVALNP T0375 172 :KPREELFQ 1rkd 168 :APARELPD T0375 180 :LFGYGDVVFVSK 1rkd 177 :LLALVDIITPNE T0375 192 :DVAKHLG 1rkd 190 :EAEKLTG T0375 199 :FQSAEEALRGLYGRV 1rkd 202 :DEDAAKAAQVLHEKG T0375 216 :GAVLVCAWAEEGADALGPDG 1rkd 217 :IRTVLITLGSRGVWASVNGE T0375 237 :LLHSDAFPPP 1rkd 237 :GQRVPGFRVQ T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 1rkd 247 :AVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKG Number of specific fragments extracted= 11 number of extra gaps= 0 total=3945 Number of alignments=325 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIIN 1rkd 4 :AGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVN T0375 102 :ASGSRTILYYDRSLPDVSATDFEKVD 1rkd 104 :GEGENVIGIHAGANAALSPALVEAQR T0375 128 :LTQFKWIHIEGRNASEQVKMLQRIDA 1rkd 132 :IANASALLMQLESPLESVMAAAKIAH T0375 161 :EQKIRVSVEVEKPREELFQLFGYGDVVFVSK 1rkd 158 :QNKTIVALNPAPARELPDELLALVDIITPNE T0375 192 :DVAKHLG 1rkd 190 :EAEKLTG T0375 199 :FQSAEEALRGLYG 1rkd 202 :DEDAAKAAQVLHE T0375 214 :RKGAVLVCAWAEEGADALGPDG 1rkd 215 :KGIRTVLITLGSRGVWASVNGE T0375 237 :LLHSDAFPPP 1rkd 237 :GQRVPGFRVQ T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1rkd 247 :AVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV Number of specific fragments extracted= 9 number of extra gaps= 0 total=3954 Number of alignments=326 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIIN 1rkd 4 :AGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVN T0375 102 :ASGSRTILYYDRSLPDVSATDFEKVD 1rkd 104 :GEGENVIGIHAGANAALSPALVEAQR T0375 128 :LTQFKWIHIEGRNASEQVKMLQRIDA 1rkd 132 :IANASALLMQLESPLESVMAAAKIAH T0375 161 :EQKIRVSVEVEKPREELFQLFGYGDVVFVSKD 1rkd 158 :QNKTIVALNPAPARELPDELLALVDIITPNET T0375 193 :VAKHLG 1rkd 191 :AEKLTG T0375 199 :FQSAEEALRGLYG 1rkd 202 :DEDAAKAAQVLHE T0375 214 :RKGAVLVCAWAEEGADALGPDG 1rkd 215 :KGIRTVLITLGSRGVWASVNGE T0375 237 :LLHSDAFPPP 1rkd 237 :GQRVPGFRVQ T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1rkd 247 :AVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV Number of specific fragments extracted= 9 number of extra gaps= 0 total=3963 Number of alignments=327 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIIN 1rkd 6 :SLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVN T0375 102 :ASGSRTILYYDRSLPDVSATDFEKVD 1rkd 104 :GEGENVIGIHAGANAALSPALVEAQR T0375 128 :LTQFKWIHIEGRNASEQVKMLQRIDA 1rkd 132 :IANASALLMQLESPLESVMAAAKIAH T0375 161 :EQKIRVSVEVEKPREELFQLFGYGDVVFVSK 1rkd 158 :QNKTIVALNPAPARELPDELLALVDIITPNE T0375 192 :DVAKHLG 1rkd 190 :EAEKLTG T0375 199 :FQSAEEALRGLYG 1rkd 202 :DEDAAKAAQVLHE T0375 214 :RKGAVLVCAWAEEGADALGPDG 1rkd 215 :KGIRTVLITLGSRGVWASVNGE T0375 237 :LLHSDAFPPP 1rkd 237 :GQRVPGFRVQ T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1rkd 247 :AVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGA Number of specific fragments extracted= 9 number of extra gaps= 0 total=3972 Number of alignments=328 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIIN 1rkd 6 :SLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVN T0375 102 :ASGSRTILYYDRSLPDVSATDFEKVD 1rkd 104 :GEGENVIGIHAGANAALSPALVEAQR T0375 128 :LTQFKWIHIEGRNASEQVKMLQRIDA 1rkd 132 :IANASALLMQLESPLESVMAAAKIAH T0375 161 :EQKIRVSVEVEKPREELFQLFGYGDVVFVSKD 1rkd 158 :QNKTIVALNPAPARELPDELLALVDIITPNET T0375 193 :VAKHLG 1rkd 191 :AEKLTG T0375 199 :FQSAEEALRGLYG 1rkd 202 :DEDAAKAAQVLHE T0375 214 :RKGAVLVCAWAEEGADALGPDG 1rkd 215 :KGIRTVLITLGSRGVWASVNGE T0375 237 :LLHSDAFPPP 1rkd 237 :GQRVPGFRVQ T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1rkd 247 :AVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGA Number of specific fragments extracted= 9 number of extra gaps= 0 total=3981 Number of alignments=329 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINE 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNG T0375 103 :SGSRTILYYDRSLPDVSATDFEKV 1rkd 105 :EGENVIGIHAGANAALSPALVEAQ T0375 127 :DLTQFKWIHIEGRNASEQVKMLQRIDAHN 1rkd 131 :RIANASALLMQLESPLESVMAAAKIAHQN T0375 163 :KIRVSVEVEKPREELFQLFGYGDVVFVS 1rkd 160 :KTIVALNPAPARELPDELLALVDIITPN T0375 191 :KDVAKHLG 1rkd 189 :TEAEKLTG T0375 199 :FQSAEEALRGLYG 1rkd 202 :DEDAAKAAQVLHE T0375 214 :RKGAVLVCAWAEEGADALG 1rkd 215 :KGIRTVLITLGSRGVWASV T0375 234 :DGKLLHSDAFPP 1rkd 234 :NGEGQRVPGFRV T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1rkd 246 :QAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGA T0375 293 :DGIV 1rkd 293 :PSVP Number of specific fragments extracted= 10 number of extra gaps= 0 total=3991 Number of alignments=330 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINE 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNG T0375 103 :SGSRTILYYDRSLPDVSATDFEKV 1rkd 105 :EGENVIGIHAGANAALSPALVEAQ T0375 127 :DLTQFKWIHIEGRNASEQVKMLQRIDAHN 1rkd 131 :RIANASALLMQLESPLESVMAAAKIAHQN T0375 163 :KIRVSVEVEKPREELFQLFGYGDVVFVSK 1rkd 160 :KTIVALNPAPARELPDELLALVDIITPNE T0375 192 :DVAKHLG 1rkd 190 :EAEKLTG T0375 199 :FQSAEEALRGLYG 1rkd 202 :DEDAAKAAQVLHE T0375 214 :RKGAVLVCAWAEEGADALG 1rkd 215 :KGIRTVLITLGSRGVWASV T0375 234 :DGKLLHSDAFPP 1rkd 234 :NGEGQRVPGFRV T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1rkd 246 :QAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGA T0375 293 :DGIV 1rkd 293 :PSVP Number of specific fragments extracted= 10 number of extra gaps= 0 total=4001 Number of alignments=331 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 4 :ILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINE 1rkd 7 :LVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNG T0375 103 :SGSRTILYYDRSLPDVSATDFEKV 1rkd 105 :EGENVIGIHAGANAALSPALVEAQ T0375 127 :DLTQFKWIHIEGRNASEQVKMLQRIDAHN 1rkd 131 :RIANASALLMQLESPLESVMAAAKIAHQN T0375 163 :KIRVSVEVEKPREELFQLFGYGDVVFVS 1rkd 160 :KTIVALNPAPARELPDELLALVDIITPN T0375 191 :KDVAKHLG 1rkd 189 :TEAEKLTG T0375 199 :FQSAEEALRGLYG 1rkd 202 :DEDAAKAAQVLHE T0375 214 :RKGAVLVCAWAEEGADALG 1rkd 215 :KGIRTVLITLGSRGVWASV T0375 234 :DGKLLHSDAFPP 1rkd 234 :NGEGQRVPGFRV T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 1rkd 246 :QAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKG Number of specific fragments extracted= 9 number of extra gaps= 0 total=4010 Number of alignments=332 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 4 :ILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINE 1rkd 7 :LVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNG T0375 103 :SGSRTILYYDRSLPDVSATDFEKV 1rkd 105 :EGENVIGIHAGANAALSPALVEAQ T0375 127 :DLTQFKWIHIEGRNASEQVKMLQRIDAHN 1rkd 131 :RIANASALLMQLESPLESVMAAAKIAHQN T0375 163 :KIRVSVEVEKPREELFQLFGYGDVVFVSK 1rkd 160 :KTIVALNPAPARELPDELLALVDIITPNE T0375 192 :DVAKHLG 1rkd 190 :EAEKLTG T0375 199 :FQSAEEALRGLYG 1rkd 202 :DEDAAKAAQVLHE T0375 214 :RKGAVLVCAWAEEGADALG 1rkd 215 :KGIRTVLITLGSRGVWASV T0375 234 :DGKLLHSDAFPP 1rkd 234 :NGEGQRVPGFRV T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 1rkd 246 :QAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKG Number of specific fragments extracted= 9 number of extra gaps= 0 total=4019 Number of alignments=333 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 249 :VDTLGAGDTFNASVIFSLSQGRSVQEALRF 1rkd 248 :VDTIAAGDTFNGALITALLEEKPLPEAIRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4020 Number of alignments=334 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQV 1rkd 246 :QAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=4021 Number of alignments=335 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINE 1rkd 4 :AGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNG T0375 103 :SGSRTILYYDRSLPDVSATDFE 1rkd 105 :EGENVIGIHAGANAALSPALVE T0375 125 :KVDLTQFKWIHIEGRNASEQ 1rkd 129 :RERIANASALLMQLESPLES T0375 145 :VKMLQRIDAHNTRQPPEQ 1rkd 150 :MAAAKIAHQNKTIVALNP T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1rkd 168 :APARELPDELLALVDIITPNETEAEKL T0375 198 :GF 1rkd 196 :GI T0375 200 :QSAEEALRGLYGRV 1rkd 203 :EDAAKAAQVLHEKG T0375 216 :GAVLVCAWAEEGADALG 1rkd 217 :IRTVLITLGSRGVWASV T0375 234 :DGKLLHSDAF 1rkd 234 :NGEGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPS Number of specific fragments extracted= 10 number of extra gaps= 0 total=4031 Number of alignments=336 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINE 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNG T0375 103 :SGSRTILYYDRSLPDVSATDFE 1rkd 105 :EGENVIGIHAGANAALSPALVE T0375 125 :KVDLTQFKWIHIEGRNASEQ 1rkd 129 :RERIANASALLMQLESPLES T0375 145 :VKMLQRIDAHNTRQPPEQ 1rkd 150 :MAAAKIAHQNKTIVALNP T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1rkd 168 :APARELPDELLALVDIITPNETEAEKL T0375 198 :GF 1rkd 196 :GI T0375 200 :QSAEEALRGLYGRV 1rkd 203 :EDAAKAAQVLHEKG T0375 216 :GAVLVCAWAEEGADALG 1rkd 217 :IRTVLITLGSRGVWASV T0375 234 :DGKLLHSDAF 1rkd 234 :NGEGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPS Number of specific fragments extracted= 10 number of extra gaps= 0 total=4041 Number of alignments=337 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINE 1rkd 4 :AGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNG T0375 103 :SGSRTILYYDRSLPDVSATDFE 1rkd 105 :EGENVIGIHAGANAALSPALVE T0375 125 :KVDLTQFKWIHIEGRNASEQ 1rkd 129 :RERIANASALLMQLESPLES T0375 145 :VKMLQRIDAHNTRQPPEQ 1rkd 150 :MAAAKIAHQNKTIVALNP T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1rkd 168 :APARELPDELLALVDIITPNETEAEKL T0375 198 :GF 1rkd 196 :GI T0375 200 :QSAEEALRGLYGRV 1rkd 203 :EDAAKAAQVLHEKG T0375 216 :GAVLVCAWAEEGADALG 1rkd 217 :IRTVLITLGSRGVWASV T0375 234 :DGKLLHSDAF 1rkd 234 :NGEGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPS Number of specific fragments extracted= 10 number of extra gaps= 0 total=4051 Number of alignments=338 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1rkd)A4 T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINE 1rkd 6 :SLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNG T0375 103 :SGSRTILYYDRSLPDVSATDFEKVD 1rkd 105 :EGENVIGIHAGANAALSPALVEAQR T0375 128 :LTQFKWIHIEGRNASEQ 1rkd 132 :IANASALLMQLESPLES T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEVE 1rkd 150 :MAAAKIAHQNKTIVALNPAPARELPDE T0375 180 :LFGYGDVVFVSKDVAKHL 1rkd 177 :LLALVDIITPNETEAEKL T0375 198 :GF 1rkd 196 :GI T0375 200 :QSAEEALRGLYGRV 1rkd 203 :EDAAKAAQVLHEKG T0375 216 :GAVLVCAWAEEGADALG 1rkd 217 :IRTVLITLGSRGVWASV T0375 234 :DGKLLHSDAF 1rkd 234 :NGEGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPS Number of specific fragments extracted= 10 number of extra gaps= 0 total=4061 Number of alignments=339 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINE 1rkd 6 :SLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNG T0375 103 :SGSRTILYYDRSLPDVSATDFE 1rkd 105 :EGENVIGIHAGANAALSPALVE T0375 125 :KVDLTQFKWIHIEGRNASEQ 1rkd 129 :RERIANASALLMQLESPLES T0375 145 :VKMLQRIDAHNTRQPPEQ 1rkd 150 :MAAAKIAHQNKTIVALNP T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1rkd 168 :APARELPDELLALVDIITPNETEAEKL T0375 198 :GF 1rkd 196 :GI T0375 200 :QSAEEALRGLYGRV 1rkd 203 :EDAAKAAQVLHEKG T0375 216 :GAVLVCAWAEEGADALG 1rkd 217 :IRTVLITLGSRGVWASV T0375 234 :DGKLLHSDAF 1rkd 234 :NGEGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDG 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQP Number of specific fragments extracted= 10 number of extra gaps= 0 total=4071 Number of alignments=340 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINE 1rkd 6 :SLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNG T0375 103 :SGSRTILYYDRSLPDVSATDFE 1rkd 105 :EGENVIGIHAGANAALSPALVE T0375 125 :KVDLTQFKWIHIEGRNASEQ 1rkd 129 :RERIANASALLMQLESPLES T0375 145 :VKMLQRIDAHNTRQPPEQ 1rkd 150 :MAAAKIAHQNKTIVALNP T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1rkd 168 :APARELPDELLALVDIITPNETEAEKL T0375 198 :GF 1rkd 196 :GI T0375 200 :QSAEEALRGLYGRV 1rkd 203 :EDAAKAAQVLHEKG T0375 216 :GAVLVCAWAEEGADALG 1rkd 217 :IRTVLITLGSRGVWASV T0375 234 :DGKLLHSDAF 1rkd 234 :NGEGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPS Number of specific fragments extracted= 10 number of extra gaps= 0 total=4081 Number of alignments=341 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINE 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNG T0375 103 :SGSRTILYYDRSLPDVSATDFE 1rkd 105 :EGENVIGIHAGANAALSPALVE T0375 125 :KVDLTQFKWIHIEGRNASEQ 1rkd 129 :RERIANASALLMQLESPLES T0375 145 :VKMLQRIDAHNTRQPPEQ 1rkd 150 :MAAAKIAHQNKTIVALNP T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1rkd 168 :APARELPDELLALVDIITPNETEAEKL T0375 198 :GF 1rkd 196 :GI T0375 200 :QSAEEALRGLYGRV 1rkd 203 :EDAAKAAQVLHEKG T0375 216 :GAVLVCAWAEEGADALG 1rkd 217 :IRTVLITLGSRGVWASV T0375 234 :DGKLLHSDAF 1rkd 234 :NGEGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQ Number of specific fragments extracted= 10 number of extra gaps= 0 total=4091 Number of alignments=342 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINE 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNG T0375 103 :SGSRTILYYDRSLPDVSATDFEKVD 1rkd 105 :EGENVIGIHAGANAALSPALVEAQR T0375 128 :LTQFKWIHIEGRNASEQ 1rkd 132 :IANASALLMQLESPLES T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEVE 1rkd 150 :MAAAKIAHQNKTIVALNPAPARELPDE T0375 180 :LFGYGDVVFVSKDVAKHL 1rkd 177 :LLALVDIITPNETEAEKL T0375 198 :GF 1rkd 196 :GI T0375 200 :QSAEEALRGLYGRV 1rkd 203 :EDAAKAAQVLHEKG T0375 216 :GAVLVCAWAEEGADALG 1rkd 217 :IRTVLITLGSRGVWASV T0375 234 :DGKLLHSDAF 1rkd 234 :NGEGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPS Number of specific fragments extracted= 10 number of extra gaps= 0 total=4101 Number of alignments=343 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 1rkd 6 :SLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 1rkd 103 :NGEGENVIGIHAGANAALSPALVEAQ T0375 127 :DLTQFKWIHIEGRNA 1rkd 131 :RIANASALLMQLESP T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 1rkd 147 :ESVMAAAKIAHQNKTIVALNP T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1rkd 168 :APARELPDELLALVDIITPNETEAEKL T0375 198 :GFQ 1rkd 196 :GIR T0375 201 :SAEEALRGLYGRVRKGA 1rkd 201 :NDEDAAKAAQVLHEKGI T0375 218 :VLVCAWAEEGADALGPD 1rkd 219 :TVLITLGSRGVWASVNG T0375 236 :KLLHSDAF 1rkd 236 :EGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV Number of specific fragments extracted= 10 number of extra gaps= 0 total=4111 Number of alignments=344 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 1rkd 6 :SLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 1rkd 103 :NGEGENVIGIHAGANAALSPALVEAQ T0375 127 :DLTQFKWIHIEGRNA 1rkd 131 :RIANASALLMQLESP T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 1rkd 147 :ESVMAAAKIAHQNKTIVALNP T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1rkd 168 :APARELPDELLALVDIITPNETEAEKL T0375 198 :GFQ 1rkd 196 :GIR T0375 201 :SAEEALRGLYGRVRKGA 1rkd 201 :NDEDAAKAAQVLHEKGI T0375 218 :VLVCAWAEEGADALGPD 1rkd 219 :TVLITLGSRGVWASVNG T0375 236 :KLLHSDAF 1rkd 236 :EGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV Number of specific fragments extracted= 10 number of extra gaps= 0 total=4121 Number of alignments=345 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 1rkd 4 :AGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 1rkd 103 :NGEGENVIGIHAGANAALSPALVEAQ T0375 127 :DLTQFKWIHIEGRNA 1rkd 131 :RIANASALLMQLESP T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 1rkd 147 :ESVMAAAKIAHQNKTIVALNP T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1rkd 168 :APARELPDELLALVDIITPNETEAEKL T0375 198 :GFQ 1rkd 196 :GIR T0375 201 :SAEEALRGLYGRVRKGA 1rkd 201 :NDEDAAKAAQVLHEKGI T0375 218 :VLVCAWAEEGADALGPD 1rkd 219 :TVLITLGSRGVWASVNG T0375 236 :KLLHSDAF 1rkd 236 :EGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV Number of specific fragments extracted= 10 number of extra gaps= 0 total=4131 Number of alignments=346 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 1 :G 1rkd 4 :A T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 1rkd 6 :SLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV T0375 101 :EASGSRTILYYDRSLPDVSATDFEKVD 1rkd 103 :NGEGENVIGIHAGANAALSPALVEAQR T0375 128 :LTQFKWIHIEGRNA 1rkd 132 :IANASALLMQLESP T0375 142 :SEQVKMLQRIDAHNTRQPPEQKIR 1rkd 147 :ESVMAAAKIAHQNKTIVALNPAPA T0375 171 :EKPRE 1rkd 171 :RELPD T0375 179 :QLFGYGDVVFVSKDVAKHL 1rkd 176 :ELLALVDIITPNETEAEKL T0375 198 :GFQ 1rkd 196 :GIR T0375 201 :SAEEALRGLYGRVRKGA 1rkd 201 :NDEDAAKAAQVLHEKGI T0375 218 :VLVCAWAEEGADALGPD 1rkd 219 :TVLITLGSRGVWASVNG T0375 236 :KLLHSDAF 1rkd 236 :EGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV Number of specific fragments extracted= 12 number of extra gaps= 0 total=4143 Number of alignments=347 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 1rkd 6 :SLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 1rkd 103 :NGEGENVIGIHAGANAALSPALVEAQ T0375 127 :DLTQFKWIHIEGRNA 1rkd 131 :RIANASALLMQLESP T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 1rkd 147 :ESVMAAAKIAHQNKTIVALNP T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1rkd 168 :APARELPDELLALVDIITPNETEAEKL T0375 198 :GFQ 1rkd 196 :GIR T0375 201 :SAEEALRGLYGRVRKGA 1rkd 201 :NDEDAAKAAQVLHEKGI T0375 218 :VLVCAWAEEGADALGPD 1rkd 219 :TVLITLGSRGVWASVNG T0375 236 :KLLHSDAF 1rkd 236 :EGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV Number of specific fragments extracted= 10 number of extra gaps= 0 total=4153 Number of alignments=348 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 1rkd 6 :SLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 1rkd 103 :NGEGENVIGIHAGANAALSPALVEAQ T0375 127 :DLTQFKWIHIEGRNA 1rkd 131 :RIANASALLMQLESP T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 1rkd 147 :ESVMAAAKIAHQNKTIVALNP T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1rkd 168 :APARELPDELLALVDIITPNETEAEKL T0375 198 :GFQ 1rkd 196 :GIR T0375 201 :SAEEALRGLYGRVRKGA 1rkd 201 :NDEDAAKAAQVLHEKGI T0375 218 :VLVCAWAEEGADALGPD 1rkd 219 :TVLITLGSRGVWASVNG T0375 236 :KLLHSDAF 1rkd 236 :EGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPS Number of specific fragments extracted= 10 number of extra gaps= 0 total=4163 Number of alignments=349 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 1rkd 103 :NGEGENVIGIHAGANAALSPALVEAQ T0375 127 :DLTQFKWIHIEGRNA 1rkd 131 :RIANASALLMQLESP T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 1rkd 147 :ESVMAAAKIAHQNKTIVALNP T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1rkd 168 :APARELPDELLALVDIITPNETEAEKL T0375 198 :GFQ 1rkd 196 :GIR T0375 201 :SAEEALRGLYGRVRKGA 1rkd 201 :NDEDAAKAAQVLHEKGI T0375 218 :VLVCAWAEEGADALGPD 1rkd 219 :TVLITLGSRGVWASVNG T0375 236 :KLLHSDAF 1rkd 236 :EGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPS Number of specific fragments extracted= 10 number of extra gaps= 0 total=4173 Number of alignments=350 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV T0375 101 :EASGSRTILYYDRSLPDVSATDFEKVD 1rkd 103 :NGEGENVIGIHAGANAALSPALVEAQR T0375 128 :LTQFKWIHIEGRNA 1rkd 132 :IANASALLMQLESP T0375 142 :SEQVKMLQRIDAHNTRQPPEQKIR 1rkd 147 :ESVMAAAKIAHQNKTIVALNPAPA T0375 171 :EKPRE 1rkd 171 :RELPD T0375 179 :QLFGYGDVVFVSKDVAKHL 1rkd 176 :ELLALVDIITPNETEAEKL T0375 198 :GFQ 1rkd 196 :GIR T0375 201 :SAEEALRGLYGRVRKGA 1rkd 201 :NDEDAAKAAQVLHEKGI T0375 218 :VLVCAWAEEGADALGPD 1rkd 219 :TVLITLGSRGVWASVNG T0375 236 :KLLHSDAF 1rkd 236 :EGQRVPGF T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1rkd 244 :RVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV Number of specific fragments extracted= 11 number of extra gaps= 0 total=4184 Number of alignments=351 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVS 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPA T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1rkd 171 :RELPDELLALVDIITPNETEAEKLTGI T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1rkd 202 :DEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGE T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1rkd 237 :GQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4188 Number of alignments=352 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 1rkd 6 :SLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPL T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1rkd 147 :ESVMAAAKIAHQNKTIVALNPAPARELPDELLALVDIITPNETEAEKLTGI T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1rkd 202 :DEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGE T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1rkd 237 :GQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4192 Number of alignments=353 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVS 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPA T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1rkd 171 :RELPDELLALVDIITPNETEAEKLTGI T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1rkd 202 :DEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGE T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1rkd 237 :GQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGA T0375 293 :DGIV 1rkd 306 :DRQR Number of specific fragments extracted= 5 number of extra gaps= 0 total=4197 Number of alignments=354 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLP 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAA T0375 118 :VSATDFE 1rkd 120 :LSPALVE T0375 125 :KVDLTQFKWIHI 1rkd 129 :RERIANASALLM T0375 138 :GRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEK 1rkd 141 :QLESPLESVMAAAKIAHQNKTIVALNPAPARELPD T0375 179 :QLFGYGDVVFVSKDVAKHLGFQ 1rkd 176 :ELLALVDIITPNETEAEKLTGI T0375 201 :SAEE 1rkd 200 :ENDE T0375 205 :ALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1rkd 206 :AKAAQVLHEKGIRTVLITLGSRGVWASVNGE T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1rkd 237 :GQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSV Number of specific fragments extracted= 8 number of extra gaps= 0 total=4205 Number of alignments=355 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVS 1rkd 6 :SLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPA T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1rkd 171 :RELPDELLALVDIITPNETEAEKLTGI T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1rkd 202 :DEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGE T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDG 1rkd 237 :GQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQP Number of specific fragments extracted= 4 number of extra gaps= 0 total=4209 Number of alignments=356 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 1rkd 6 :SLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPL T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1rkd 147 :ESVMAAAKIAHQNKTIVALNPAPARELPDELLALVDIITPNETEAEKLTGI T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1rkd 202 :DEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGE T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDG 1rkd 237 :GQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQP Number of specific fragments extracted= 4 number of extra gaps= 0 total=4213 Number of alignments=357 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVS 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPA T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1rkd 171 :RELPDELLALVDIITPNETEAEKLTGI T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1rkd 202 :DEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGE T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1rkd 237 :GQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGA Number of specific fragments extracted= 4 number of extra gaps= 0 total=4217 Number of alignments=358 # 1rkd read from 1rkd/merged-a2m # found chain 1rkd in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLP 1rkd 5 :GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAA T0375 118 :VSATDFE 1rkd 120 :LSPALVE T0375 125 :KVDLTQFKWIHI 1rkd 129 :RERIANASALLM T0375 138 :GRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEK 1rkd 141 :QLESPLESVMAAAKIAHQNKTIVALNPAPARELPD T0375 179 :QLFGYGDVVFVSKDVAKHLGFQ 1rkd 176 :ELLALVDIITPNETEAEKLTGI T0375 201 :SAEE 1rkd 200 :ENDE T0375 205 :ALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1rkd 206 :AKAAQVLHEKGIRTVLITLGSRGVWASVNGE T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1rkd 237 :GQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=4225 Number of alignments=359 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2absA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0375 read from 2absA/merged-a2m # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)K172 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)A202 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLL 2absA 31 :SSFLDEFFLKRGDATLATPEQMRIYSTLDQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYT 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFM T0375 86 :FQTTGSVPIATVIIN 2absA 118 :VAPGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDV 2absA 133 :EKERTLCTHLGACGSF T0375 119 :SATDF 2absA 150 :LPEDW T0375 125 :KVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPP 2absA 155 :TTFASGALIFYATAYTLTATPKNALEVAGYAHGIPN T0375 164 :IRVSVE 2absA 191 :AIFTLN T0375 173 :P 2absA 199 :A T0375 174 :REELFQLFGYGDVVFVSK 2absA 207 :KDAMQSLLLHTNILFGNE T0375 192 :DVAKHLGFQS 2absA 226 :EFAHLAKVHN T0375 203 :EEALRGLYGRVRKGA 2absA 253 :VEVCTGALRLLTAGQ T0375 218 :V 2absA 269 :T T0375 219 :LVCAWAEEGADALG 2absA 275 :VVMTRGHNPVIAAE T0375 233 :PDGKLLH 2absA 291 :ADGTVVV T0375 240 :SDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2absA 302 :VPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 15 number of extra gaps= 2 total=4240 Number of alignments=360 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)K172 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)A202 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLL 2absA 31 :SSFLDEFFLKRGDATLATPEQMRIYSTLDQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYT 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFM T0375 86 :FQTTGSVPIATVIIN 2absA 118 :VAPGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDV 2absA 133 :EKERTLCTHLGACGSF T0375 119 :SATDF 2absA 150 :LPEDW T0375 125 :KVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPP 2absA 155 :TTFASGALIFYATAYTLTATPKNALEVAGYAHGIPN T0375 164 :IRVSVE 2absA 191 :AIFTLN T0375 173 :P 2absA 199 :A T0375 174 :REELFQLFGYGDVVFVSKD 2absA 207 :KDAMQSLLLHTNILFGNEE T0375 193 :VAKHLGFQS 2absA 227 :FAHLAKVHN T0375 203 :EEALRGLYGRVRKGA 2absA 253 :VEVCTGALRLLTAGQ T0375 218 :V 2absA 269 :T T0375 219 :LVCAWAEEGADALG 2absA 275 :VVMTRGHNPVIAAE T0375 233 :PDGKLLH 2absA 291 :ADGTVVV T0375 240 :SDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2absA 302 :VPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 15 number of extra gaps= 2 total=4255 Number of alignments=361 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)K172 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)A202 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 T0375 4 :ILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLL 2absA 34 :LDEFFLKRGDATLATPEQMRIYSTLDQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYT 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFM T0375 86 :FQTTGSVPIATVIIN 2absA 118 :VAPGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDV 2absA 133 :EKERTLCTHLGACGSF T0375 119 :SATDF 2absA 150 :LPEDW T0375 125 :KVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPP 2absA 155 :TTFASGALIFYATAYTLTATPKNALEVAGYAHGIPN T0375 164 :IRVSVE 2absA 191 :AIFTLN T0375 173 :P 2absA 199 :A T0375 174 :REELFQLFGYGDVVFVSK 2absA 207 :KDAMQSLLLHTNILFGNE T0375 192 :DVAKHLGFQS 2absA 226 :EFAHLAKVHN T0375 203 :EEALRGLYGRVRKGA 2absA 253 :VEVCTGALRLLTAGQ T0375 218 :V 2absA 269 :T T0375 219 :LVCAWAEEGADALG 2absA 275 :VVMTRGHNPVIAAE T0375 233 :PDGKLLH 2absA 291 :ADGTVVV T0375 240 :SDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2absA 302 :VPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 15 number of extra gaps= 2 total=4270 Number of alignments=362 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)K172 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)A202 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLL 2absA 33 :FLDEFFLKRGDATLATPEQMRIYSTLDQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYT 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFM T0375 86 :FQTTGSVPIATVIIN 2absA 118 :VAPGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDV 2absA 133 :EKERTLCTHLGACGSF T0375 119 :SATDF 2absA 150 :LPEDW T0375 125 :KVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPP 2absA 155 :TTFASGALIFYATAYTLTATPKNALEVAGYAHGIPN T0375 164 :IRVSVE 2absA 191 :AIFTLN T0375 173 :P 2absA 199 :A T0375 174 :REELFQLFGYGDVVFVSKD 2absA 207 :KDAMQSLLLHTNILFGNEE T0375 193 :VAKHLGFQS 2absA 227 :FAHLAKVHN T0375 203 :EEALRGLYGRVRKGA 2absA 253 :VEVCTGALRLLTAGQ T0375 218 :V 2absA 269 :T T0375 219 :LVCAWAEEGADALG 2absA 275 :VVMTRGHNPVIAAE T0375 233 :PDGKLLH 2absA 291 :ADGTVVV T0375 240 :SDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDG 2absA 302 :VPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSL Number of specific fragments extracted= 15 number of extra gaps= 2 total=4285 Number of alignments=363 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)E171 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)G198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2absA)N248 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE at template residue (2absA)A271 T0375 1 :GSQILCVGLVVLDVISLV 2absA 12 :PMRVFAIGNPILDLVAEV T0375 19 :DKYPKEDSEIRCLSQRWQRGGNASNSCTILSLL 2absA 49 :PEQMRIYSTLDQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYT 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFM T0375 86 :FQTTGSVPIATVIINE 2absA 118 :VAPGQSTGVCAVLINE T0375 104 :GSRTILYYDRSLPDV 2absA 134 :KERTLCTHLGACGSF T0375 119 :SATDFE 2absA 150 :LPEDWT T0375 126 :VDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQ 2absA 156 :TFASGALIFYATAYTLTATPKNALEVAGYAHGI T0375 162 :QKIRVSVE 2absA 189 :PNAIFTLN T0375 172 :K 2absA 199 :A T0375 173 :PREELFQLFGYGDVVFVSKDVAKHL 2absA 206 :YKDAMQSLLLHTNILFGNEEEFAHL T0375 199 :FQSAEEALRGLYGRVR 2absA 249 :KEHAVEVCTGALRLLT T0375 216 :GAVLVCAWAEEGADALGPDGK 2absA 272 :TKLVVMTRGHNPVIAAEQTAD T0375 237 :LLHSDAFPPP 2absA 297 :VHEVGVPVVA T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2absA 309 :KIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 14 number of extra gaps= 2 total=4299 Number of alignments=364 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)G198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2absA)N248 Warning: unaligning (T0375)G216 because of BadResidue code BAD_PEPTIDE at template residue (2absA)A271 T0375 2 :S 2absA 11 :G T0375 3 :QILCVGLVVLDVISLV 2absA 14 :RVFAIGNPILDLVAEV T0375 19 :DKYPKEDSEIRCLSQRWQRGGNASNSCTILSLL 2absA 49 :PEQMRIYSTLDQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYT 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFM T0375 86 :FQTTGSVPIATVIINE 2absA 118 :VAPGQSTGVCAVLINE T0375 104 :GSRTILYYDRSLPDV 2absA 134 :KERTLCTHLGACGSF T0375 119 :SATDFE 2absA 150 :LPEDWT T0375 126 :VDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQ 2absA 156 :TFASGALIFYATAYTLTATPKNALEVAGYAHGI T0375 162 :QKIRVSVE 2absA 189 :PNAIFTLN T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 2absA 204 :ELYKDAMQSLLLHTNILFGNEEEFAHL T0375 199 :FQSAEEALRGLYGRVRK 2absA 249 :KEHAVEVCTGALRLLTA T0375 217 :AVLVCAWAEEGADALGPDGK 2absA 273 :KLVVMTRGHNPVIAAEQTAD T0375 237 :LLHSDAFPPP 2absA 297 :VHEVGVPVVA T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2absA 309 :KIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 14 number of extra gaps= 2 total=4313 Number of alignments=365 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)E171 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)G198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2absA)N248 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE at template residue (2absA)A271 T0375 3 :QILCVGLVVLDVISLV 2absA 14 :RVFAIGNPILDLVAEV T0375 19 :DKYPKEDSEIRCLSQRWQRGGNASNSCTILSLL 2absA 49 :PEQMRIYSTLDQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYT 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFM T0375 86 :FQTTGSVPIATVIINE 2absA 118 :VAPGQSTGVCAVLINE T0375 104 :GSRTILYYDRSLPDV 2absA 134 :KERTLCTHLGACGSF T0375 119 :SATDFE 2absA 150 :LPEDWT T0375 126 :VDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQ 2absA 156 :TFASGALIFYATAYTLTATPKNALEVAGYAHGI T0375 162 :QKIRVSVE 2absA 189 :PNAIFTLN T0375 172 :K 2absA 199 :A T0375 173 :PREELFQLFGYGDVVFVSKDVAKHL 2absA 206 :YKDAMQSLLLHTNILFGNEEEFAHL T0375 199 :FQSAEEALRGLYGRVR 2absA 249 :KEHAVEVCTGALRLLT T0375 216 :GAVLVCAWAEEGADALGPDGK 2absA 272 :TKLVVMTRGHNPVIAAEQTAD T0375 237 :LLHSDAFPPP 2absA 297 :VHEVGVPVVA T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2absA 309 :KIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 14 number of extra gaps= 2 total=4327 Number of alignments=366 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)G198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2absA)N248 Warning: unaligning (T0375)G216 because of BadResidue code BAD_PEPTIDE at template residue (2absA)A271 T0375 3 :QILCVGLVVLDVISLV 2absA 14 :RVFAIGNPILDLVAEV T0375 19 :DKYPKEDSEIRCLSQRWQRGGNASNSCTILSLL 2absA 49 :PEQMRIYSTLDQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYT 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFM T0375 86 :FQTTGSVPIATVIINE 2absA 118 :VAPGQSTGVCAVLINE T0375 104 :GSRTILYYDRSLPDV 2absA 134 :KERTLCTHLGACGSF T0375 119 :SATDFE 2absA 150 :LPEDWT T0375 126 :VDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQ 2absA 156 :TFASGALIFYATAYTLTATPKNALEVAGYAHGI T0375 162 :QKIRVSVE 2absA 189 :PNAIFTLN T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 2absA 204 :ELYKDAMQSLLLHTNILFGNEEEFAHL T0375 199 :FQSAEEALRGLYGRVRK 2absA 249 :KEHAVEVCTGALRLLTA T0375 217 :AVLVCAWAEEGADALGPDGK 2absA 273 :KLVVMTRGHNPVIAAEQTAD T0375 237 :LLHSDAFPPP 2absA 297 :VHEVGVPVVA T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDG 2absA 309 :KIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSL Number of specific fragments extracted= 13 number of extra gaps= 2 total=4340 Number of alignments=367 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)E171 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)E203 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 Warning: unaligning (T0375)E204 because of BadResidue code BAD_PEPTIDE at template residue (2absA)V237 Warning: unaligning (T0375)R214 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)A271 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE at template residue (2absA)A271 Warning: unaligning (T0375)I295 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2absA)T359 Warning: unaligning (T0375)V296 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2absA)T359 T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCL 2absA 12 :PMRVFAIGNPILDLVAEVPSSFLDEFFLKRG T0375 32 :SQRWQRGGNASNSCTILSLL 2absA 62 :NPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQ T0375 93 :PIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQV 2absA 123 :STGVCAVLINEKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTATP T0375 149 :QRIDAHNTRQPPEQKIRVSVE 2absA 176 :KNALEVAGYAHGIPNAIFTLN T0375 172 :KP 2absA 199 :AP T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQSA 2absA 207 :KDAMQSLLLHTNILFGNEEEFAHLAKVHN T0375 207 :RGLYGRV 2absA 263 :LTAGQNT T0375 216 :GAVLVCAWAEEGADALGPDGKL 2absA 272 :TKLVVMTRGHNPVIAAEQTADG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 2absA 300 :VGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVG T0375 292 :FDG 2absA 355 :SLS Number of specific fragments extracted= 11 number of extra gaps= 4 total=4351 Number of alignments=368 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)E171 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)E203 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 Warning: unaligning (T0375)E204 because of BadResidue code BAD_PEPTIDE at template residue (2absA)V237 Warning: unaligning (T0375)I295 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2absA)T359 Warning: unaligning (T0375)V296 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2absA)T359 T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCL 2absA 12 :PMRVFAIGNPILDLVAEVPSSFLDEFFLKRG T0375 32 :SQRWQRGGNASNSCTILSLL 2absA 62 :NPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQ T0375 93 :PIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQV 2absA 123 :STGVCAVLINEKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTATP T0375 149 :QRIDAHNTRQPPEQKIRVSVE 2absA 176 :KNALEVAGYAHGIPNAIFTLN T0375 172 :KP 2absA 199 :AP T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQSA 2absA 207 :KDAMQSLLLHTNILFGNEEEFAHLAKVHN T0375 207 :RGLYGRVRKGA 2absA 258 :GALRLLTAGQN T0375 218 :VLVCAWAEEGADALGPDGKL 2absA 274 :LVVMTRGHNPVIAAEQTADG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2absA 300 :VGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF T0375 293 :DG 2absA 356 :LS Number of specific fragments extracted= 11 number of extra gaps= 3 total=4362 Number of alignments=369 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)E171 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)E203 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 Warning: unaligning (T0375)E204 because of BadResidue code BAD_PEPTIDE at template residue (2absA)V237 Warning: unaligning (T0375)R214 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)A271 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE at template residue (2absA)A271 T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCL 2absA 14 :RVFAIGNPILDLVAEVPSSFLDEFFLKRG T0375 32 :SQRWQRGGNASNSCTILSLL 2absA 62 :NPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQ T0375 93 :PIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQV 2absA 123 :STGVCAVLINEKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTATP T0375 149 :QRIDAHNTRQPPEQKIRVSVE 2absA 176 :KNALEVAGYAHGIPNAIFTLN T0375 172 :KP 2absA 199 :AP T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQSA 2absA 207 :KDAMQSLLLHTNILFGNEEEFAHLAKVHN T0375 207 :RGLYGRV 2absA 263 :LTAGQNT T0375 216 :GAVLVCAWAEEGADALGPDGKL 2absA 272 :TKLVVMTRGHNPVIAAEQTADG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 2absA 300 :VGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVG Number of specific fragments extracted= 10 number of extra gaps= 3 total=4372 Number of alignments=370 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)E171 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)E203 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 Warning: unaligning (T0375)E204 because of BadResidue code BAD_PEPTIDE at template residue (2absA)V237 T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCL 2absA 14 :RVFAIGNPILDLVAEVPSSFLDEFFLKRG T0375 32 :SQRWQRGGNASNSCTILSLL 2absA 62 :NPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQ T0375 93 :PIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQV 2absA 123 :STGVCAVLINEKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTATP T0375 149 :QRIDAHNTRQPPEQKIRVSVE 2absA 176 :KNALEVAGYAHGIPNAIFTLN T0375 172 :KP 2absA 199 :AP T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQSA 2absA 207 :KDAMQSLLLHTNILFGNEEEFAHLAKVHN T0375 207 :RGLYGRVRKGA 2absA 258 :GALRLLTAGQN T0375 218 :VLVCAWAEEGADALGPDGKL 2absA 274 :LVVMTRGHNPVIAAEQTADG T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 2absA 300 :VGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVG Number of specific fragments extracted= 10 number of extra gaps= 2 total=4382 Number of alignments=371 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2absA 309 :KIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 1 number of extra gaps= 0 total=4383 Number of alignments=372 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAG 2absA 307 :AEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=4384 Number of alignments=373 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)R165 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)R214 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)A271 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE at template residue (2absA)A271 Warning: unaligning (T0375)I295 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2absA)T359 T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEI 2absA 12 :PMRVFAIGNPILDLVAEVPSSFLDEFFL T0375 29 :RCLSQRWQRGGNASNSCTILSLL 2absA 59 :DQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 2absA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 2absA 133 :EKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTAT T0375 145 :VKMLQRI 2absA 176 :KNALEVA T0375 152 :DAHNTR 2absA 184 :YAHGIP T0375 158 :QPPEQK 2absA 191 :AIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 2absA 232 :KV T0375 200 :QSAEEALRGLYGR 2absA 257 :TGALRLLTAGQNT T0375 216 :GAVLVCAWAEEGADALG 2absA 272 :TKLVVMTRGHNPVIAAE T0375 233 :PDGKLL 2absA 291 :ADGTVV T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 2absA 301 :GVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS T0375 294 :G 2absA 357 :S Number of specific fragments extracted= 15 number of extra gaps= 3 total=4399 Number of alignments=374 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)R165 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)I295 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2absA)T359 T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEI 2absA 12 :PMRVFAIGNPILDLVAEVPSSFLDEFFL T0375 29 :RCLSQRWQRGGNASNSCTILSLL 2absA 59 :DQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 2absA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 2absA 133 :EKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTAT T0375 145 :VKMLQR 2absA 179 :LEVAGY T0375 153 :AHNTR 2absA 185 :AHGIP T0375 158 :QPPEQK 2absA 191 :AIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 2absA 232 :KV T0375 202 :AEEALRGLYGRVRK 2absA 255 :VCTGALRLLTAGQN T0375 216 :GAVLVCAWAEEGADALG 2absA 272 :TKLVVMTRGHNPVIAAE T0375 233 :PDGKLL 2absA 291 :ADGTVV T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 2absA 301 :GVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS T0375 294 :G 2absA 357 :S Number of specific fragments extracted= 15 number of extra gaps= 2 total=4414 Number of alignments=375 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)K163 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)I295 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2absA)T359 T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEI 2absA 13 :MRVFAIGNPILDLVAEVPSSFLDEFFL T0375 29 :RCLSQRWQRGGNASNSCTILSLL 2absA 59 :DQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 2absA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 2absA 133 :EKERTLCTHLGACGSFR T0375 120 :ATDFE 2absA 151 :PEDWT T0375 126 :VDLTQFKWIHIEGRNASEQ 2absA 156 :TFASGALIFYATAYTLTAT T0375 145 :VKMLQRIDAH 2absA 179 :LEVAGYAHGI T0375 155 :NTRQPPE 2absA 190 :NAIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 2absA 232 :KV T0375 200 :QSAEEALR 2absA 250 :EHAVEVCT T0375 208 :GLYGRVRK 2absA 261 :RLLTAGQN T0375 216 :GAVLVCAWAEEGADAL 2absA 272 :TKLVVMTRGHNPVIAA T0375 232 :GPDGKLLHS 2absA 290 :TADGTVVVH T0375 241 :DAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 2absA 303 :PVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS T0375 294 :G 2absA 357 :S Number of specific fragments extracted= 17 number of extra gaps= 2 total=4431 Number of alignments=376 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)K163 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)F199 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 Warning: unaligning (T0375)I295 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2absA)T359 T0375 2 :SQILCVGLVVLDVISLVD 2absA 13 :MRVFAIGNPILDLVAEVP T0375 23 :KED 2absA 40 :KRG T0375 27 :EI 2absA 43 :DA T0375 29 :RCLSQRWQRGGNASNSCTILSLL 2absA 59 :DQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 2absA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 2absA 133 :EKERTLCTHLGACGSFR T0375 120 :ATDF 2absA 151 :PEDW T0375 125 :KVDLTQFKWIHIEGR 2absA 155 :TTFASGALIFYATAY T0375 140 :NASEQVKMLQRIDAH 2absA 174 :TPKNALEVAGYAHGI T0375 155 :NTRQPPE 2absA 190 :NAIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :G 2absA 235 :N T0375 200 :QSAEEALRGLYGR 2absA 250 :EHAVEVCTGALRL T0375 216 :GAVLVCAWAEEGADAL 2absA 272 :TKLVVMTRGHNPVIAA T0375 232 :GPDGKLLHS 2absA 290 :TADGTVVVH T0375 241 :DAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 2absA 303 :PVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS T0375 294 :G 2absA 357 :S Number of specific fragments extracted= 18 number of extra gaps= 3 total=4449 Number of alignments=377 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)R165 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)R214 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)A271 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE at template residue (2absA)A271 T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEI 2absA 12 :PMRVFAIGNPILDLVAEVPSSFLDEFFL T0375 29 :RCLSQRWQRGGNASNSCTILSLL 2absA 59 :DQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 2absA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 2absA 133 :EKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTAT T0375 145 :VKMLQRI 2absA 176 :KNALEVA T0375 152 :DAHNTR 2absA 184 :YAHGIP T0375 158 :QPPEQK 2absA 191 :AIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 2absA 232 :KV T0375 200 :QSAEEALRGLYGR 2absA 257 :TGALRLLTAGQNT T0375 216 :GAVLVCAWAEEGADALG 2absA 272 :TKLVVMTRGHNPVIAAE T0375 233 :PDGKLL 2absA 291 :ADGTVV T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2absA 301 :GVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 14 number of extra gaps= 2 total=4463 Number of alignments=378 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)R165 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEI 2absA 13 :MRVFAIGNPILDLVAEVPSSFLDEFFL T0375 29 :RCLSQRWQRGGNASNSCTILSLL 2absA 59 :DQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 2absA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 2absA 133 :EKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTAT T0375 145 :VKMLQR 2absA 179 :LEVAGY T0375 153 :AHNTR 2absA 185 :AHGIP T0375 158 :QPPEQK 2absA 191 :AIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 2absA 232 :KV T0375 202 :AEEALRGLYGRVRK 2absA 255 :VCTGALRLLTAGQN T0375 216 :GAVLVCAWAEEGADALG 2absA 272 :TKLVVMTRGHNPVIAAE T0375 233 :PDGKLL 2absA 291 :ADGTVV T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2absA 301 :GVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 14 number of extra gaps= 1 total=4477 Number of alignments=379 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)K163 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEI 2absA 12 :PMRVFAIGNPILDLVAEVPSSFLDEFFL T0375 29 :RCLSQRWQRGGNASNSCTILSLL 2absA 59 :DQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 2absA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 2absA 133 :EKERTLCTHLGACGSFR T0375 120 :ATDFE 2absA 151 :PEDWT T0375 126 :VDLTQFKWIHIEGRNASEQ 2absA 156 :TFASGALIFYATAYTLTAT T0375 145 :VKMLQRIDAH 2absA 179 :LEVAGYAHGI T0375 155 :NTRQPPE 2absA 190 :NAIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GF 2absA 232 :KV T0375 200 :QSAEEALR 2absA 250 :EHAVEVCT T0375 208 :GLYGRVRK 2absA 261 :RLLTAGQN T0375 216 :GAVLVCAWAEEGADAL 2absA 272 :TKLVVMTRGHNPVIAA T0375 232 :GPDGKLLHS 2absA 290 :TADGTVVVH T0375 241 :DAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 2absA 303 :PVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS Number of specific fragments extracted= 16 number of extra gaps= 1 total=4493 Number of alignments=380 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)K163 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)F199 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 Warning: unaligning (T0375)I295 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2absA)T359 T0375 1 :GSQILCVGLVVLDVISLVD 2absA 12 :PMRVFAIGNPILDLVAEVP T0375 23 :KED 2absA 40 :KRG T0375 27 :EI 2absA 43 :DA T0375 29 :RCLSQRWQRGGNASNSCTILSLL 2absA 59 :DQFNPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 2absA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 2absA 133 :EKERTLCTHLGACGSFR T0375 120 :ATDF 2absA 151 :PEDW T0375 125 :KVDLTQFKWIHIEGR 2absA 155 :TTFASGALIFYATAY T0375 140 :NASEQVKMLQRIDAH 2absA 174 :TPKNALEVAGYAHGI T0375 155 :NTRQPPE 2absA 190 :NAIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :G 2absA 235 :N T0375 200 :QSAEEALRGLYGR 2absA 250 :EHAVEVCTGALRL T0375 216 :GAVLVCAWAEEGADAL 2absA 272 :TKLVVMTRGHNPVIAA T0375 232 :GPDGKLLHS 2absA 290 :TADGTVVVH T0375 241 :DAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 2absA 303 :PVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS T0375 294 :G 2absA 357 :S Number of specific fragments extracted= 18 number of extra gaps= 3 total=4511 Number of alignments=381 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)R165 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQR 2absA 13 :MRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLAT T0375 38 :GGNASNSCTILSLL 2absA 68 :GGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVII 2absA 120 :PGQSTGVCAVLI T0375 102 :ASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNA 2absA 132 :NEKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTL T0375 142 :SEQVKMLQRID 2absA 173 :ATPKNALEVAG T0375 153 :AHNTR 2absA 185 :AHGIP T0375 158 :QPPEQK 2absA 191 :AIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GFQ 2absA 232 :KVH T0375 201 :SAEEALRGLYGRVRKGA 2absA 251 :HAVEVCTGALRLLTAGQ T0375 218 :V 2absA 269 :T T0375 219 :LVCAWAEEGADALGPDG 2absA 275 :VVMTRGHNPVIAAEQTA T0375 236 :KLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2absA 298 :HEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 14 number of extra gaps= 1 total=4525 Number of alignments=382 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)R165 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)G216 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)A271 Warning: unaligning (T0375)A217 because of BadResidue code BAD_PEPTIDE at template residue (2absA)A271 T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQR 2absA 13 :MRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLAT T0375 38 :GGNASNSCTILSLL 2absA 68 :GGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTV 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMV T0375 87 :QTTGSVPIATVII 2absA 119 :APGQSTGVCAVLI T0375 102 :ASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNA 2absA 132 :NEKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTL T0375 142 :SEQVKMLQRID 2absA 173 :ATPKNALEVAG T0375 153 :AHNTR 2absA 185 :AHGIP T0375 158 :QPPEQK 2absA 191 :AIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GFQ 2absA 232 :KVH T0375 201 :SAEEALRGLYGRVRK 2absA 251 :HAVEVCTGALRLLTA T0375 218 :VLVCAWAEEGADALGP 2absA 274 :LVVMTRGHNPVIAAEQ T0375 234 :DGKLL 2absA 292 :DGTVV T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2absA 301 :GVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 14 number of extra gaps= 2 total=4539 Number of alignments=383 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)K163 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)F199 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 Warning: unaligning (T0375)Q200 because of BadResidue code BAD_PEPTIDE at template residue (2absA)V237 Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2absA)N248 T0375 3 :QILCVGLVVLDVISLVDKY 2absA 14 :RVFAIGNPILDLVAEVPSS T0375 22 :PKEDSEIRCL 2absA 39 :LKRGDATLAT T0375 32 :SQRWQRGGNASNSCTILSLL 2absA 62 :NPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 2absA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 2absA 133 :EKERTLCTHLGACGSFR T0375 120 :ATDFEKV 2absA 151 :PEDWTTF T0375 128 :LTQFKWIHIEGRNA 2absA 158 :ASGALIFYATAYTL T0375 143 :EQVKMLQRIDAH 2absA 177 :NALEVAGYAHGI T0375 155 :NTRQPPE 2absA 190 :NAIFTLN T0375 164 :IRVSV 2absA 199 :APFCV T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 2absA 204 :ELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :G 2absA 235 :N T0375 202 :AEEALRGLY 2absA 249 :KEHAVEVCT T0375 211 :GRVRKG 2absA 261 :RLLTAG T0375 217 :A 2absA 272 :T T0375 218 :VLVCAWAEEGADAL 2absA 274 :LVVMTRGHNPVIAA T0375 232 :GPDGKLLHSDAFP 2absA 290 :TADGTVVVHEVGV T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2absA 307 :AEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 19 number of extra gaps= 2 total=4558 Number of alignments=384 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)K163 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)F199 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 Warning: unaligning (T0375)Q200 because of BadResidue code BAD_PEPTIDE at template residue (2absA)V237 Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2absA)N248 T0375 3 :QILCVGLVVLDVISLVD 2absA 14 :RVFAIGNPILDLVAEVP T0375 22 :PKEDSEIRCLSQ 2absA 39 :LKRGDATLATPE T0375 34 :RWQRGGNASNSCTILSLL 2absA 64 :TSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 2absA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 2absA 133 :EKERTLCTHLGACGSFR T0375 120 :ATDFEK 2absA 151 :PEDWTT T0375 127 :DLTQFKWIHIEGRN 2absA 157 :FASGALIFYATAYT T0375 141 :ASEQVKMLQRIDAH 2absA 175 :PKNALEVAGYAHGI T0375 155 :NTRQPPE 2absA 190 :NAIFTLN T0375 164 :IRVSV 2absA 199 :APFCV T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 2absA 204 :ELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :G 2absA 235 :N T0375 202 :AEEALRGLYGRVR 2absA 249 :KEHAVEVCTGALR T0375 215 :KG 2absA 265 :AG T0375 217 :A 2absA 272 :T T0375 218 :VLVCAWAEEGADAL 2absA 274 :LVVMTRGHNPVIAA T0375 232 :GPDGKLL 2absA 290 :TADGTVV T0375 239 :HSDAFP 2absA 299 :EVGVPV T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2absA 307 :AEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 20 number of extra gaps= 2 total=4578 Number of alignments=385 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)R165 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQR 2absA 12 :PMRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLAT T0375 38 :GGNASNSCTILSLL 2absA 68 :GGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVII 2absA 120 :PGQSTGVCAVLI T0375 102 :ASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNA 2absA 132 :NEKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTL T0375 142 :SEQVKMLQRID 2absA 173 :ATPKNALEVAG T0375 153 :AHNTR 2absA 185 :AHGIP T0375 158 :QPPEQK 2absA 191 :AIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GFQ 2absA 232 :KVH T0375 201 :SAEEALRGLYGRVRKGA 2absA 251 :HAVEVCTGALRLLTAGQ T0375 218 :V 2absA 269 :T T0375 219 :LVCAWAEEGADALGPDG 2absA 275 :VVMTRGHNPVIAAEQTA T0375 236 :KLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2absA 298 :HEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 14 number of extra gaps= 1 total=4592 Number of alignments=386 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)R165 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)G216 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)A271 Warning: unaligning (T0375)A217 because of BadResidue code BAD_PEPTIDE at template residue (2absA)A271 T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQR 2absA 13 :MRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLAT T0375 38 :GGNASNSCTILSLL 2absA 68 :GGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTV 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMV T0375 87 :QTTGSVPIATVII 2absA 119 :APGQSTGVCAVLI T0375 102 :ASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNA 2absA 132 :NEKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTL T0375 142 :SEQVKMLQRID 2absA 173 :ATPKNALEVAG T0375 153 :AHNTR 2absA 185 :AHGIP T0375 158 :QPPEQK 2absA 191 :AIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :GFQ 2absA 232 :KVH T0375 201 :SAEEALRGLYGRVRK 2absA 251 :HAVEVCTGALRLLTA T0375 218 :VLVCAWAEEGADALGP 2absA 274 :LVVMTRGHNPVIAAEQ T0375 234 :DGKLL 2absA 292 :DGTVV T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2absA 301 :GVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 14 number of extra gaps= 2 total=4606 Number of alignments=387 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)K163 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)F199 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 Warning: unaligning (T0375)Q200 because of BadResidue code BAD_PEPTIDE at template residue (2absA)V237 Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2absA)N248 T0375 1 :GSQILCVGLVVLDVISLVDKY 2absA 12 :PMRVFAIGNPILDLVAEVPSS T0375 22 :PKEDSEIRCL 2absA 39 :LKRGDATLAT T0375 32 :SQRWQRGGNASNSCTILSLL 2absA 62 :NPTSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 2absA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 2absA 133 :EKERTLCTHLGACGSFR T0375 120 :ATDFEKV 2absA 151 :PEDWTTF T0375 128 :LTQFKWIHIEGRNA 2absA 158 :ASGALIFYATAYTL T0375 143 :EQVKMLQRIDAH 2absA 177 :NALEVAGYAHGI T0375 155 :NTRQPPE 2absA 190 :NAIFTLN T0375 164 :IRVSV 2absA 199 :APFCV T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 2absA 204 :ELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :G 2absA 235 :N T0375 202 :AEEALRGLY 2absA 249 :KEHAVEVCT T0375 211 :GRVRKG 2absA 261 :RLLTAG T0375 217 :A 2absA 272 :T T0375 218 :VLVCAWAEEGADAL 2absA 274 :LVVMTRGHNPVIAA T0375 232 :GPDGKLLHSDAFP 2absA 290 :TADGTVVVHEVGV T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2absA 307 :AEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 19 number of extra gaps= 2 total=4625 Number of alignments=388 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)Q162 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)K163 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)F199 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)V237 Warning: unaligning (T0375)Q200 because of BadResidue code BAD_PEPTIDE at template residue (2absA)V237 Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2absA)N248 T0375 1 :GSQILCVGLVVLDVISLVD 2absA 12 :PMRVFAIGNPILDLVAEVP T0375 22 :PKEDSEIRCLSQ 2absA 39 :LKRGDATLATPE T0375 34 :RWQRGGNASNSCTILSLL 2absA 64 :TSLPGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIIN 2absA 120 :PGQSTGVCAVLIN T0375 103 :SGSRTILYYDRSLPDVS 2absA 133 :EKERTLCTHLGACGSFR T0375 120 :ATDFEK 2absA 151 :PEDWTT T0375 127 :DLTQFKWIHIEGRN 2absA 157 :FASGALIFYATAYT T0375 141 :ASEQVKMLQRIDAH 2absA 175 :PKNALEVAGYAHGI T0375 155 :NTRQPPE 2absA 190 :NAIFTLN T0375 164 :IRVSV 2absA 199 :APFCV T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 2absA 204 :ELYKDAMQSLLLHTNILFGNEEEFAHL T0375 198 :G 2absA 235 :N T0375 202 :AEEALRGLYGRVR 2absA 249 :KEHAVEVCTGALR T0375 215 :KG 2absA 265 :AG T0375 217 :A 2absA 272 :T T0375 218 :VLVCAWAEEGADAL 2absA 274 :LVVMTRGHNPVIAA T0375 232 :GPDGKLL 2absA 290 :TADGTVV T0375 239 :HSDAFP 2absA 299 :EVGVPV T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2absA 307 :AEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 20 number of extra gaps= 2 total=4645 Number of alignments=389 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)R165 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)R214 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)A271 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE at template residue (2absA)A271 T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQ 2absA 13 :MRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLA T0375 37 :RGGNASNSCTILSLL 2absA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVI 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLI T0375 101 :EASGSRTILYYDRSLP 2absA 132 :NEKERTLCTHLGACGS T0375 118 :VSATDFEKVDLTQFKWIHIEGRNASE 2absA 148 :FRLPEDWTTFASGALIFYATAYTLTA T0375 144 :QVKMLQRIDAHNTRQPPEQK 2absA 177 :NALEVAGYAHGIPNAIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKV T0375 201 :SAEEALRGLYGRV 2absA 257 :TGALRLLTAGQNT T0375 216 :GAVLVCAWAEEGADALGPDG 2absA 272 :TKLVVMTRGHNPVIAAEQTA T0375 236 :KLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2absA 298 :HEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 10 number of extra gaps= 2 total=4655 Number of alignments=390 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)E171 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)R214 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)A271 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE at template residue (2absA)A271 T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQ 2absA 13 :MRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLA T0375 37 :RGGNASNSCTILSLL 2absA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVL T0375 99 :I 2absA 131 :I T0375 101 :EASGSRTILYYDRSLPDVSA 2absA 132 :NEKERTLCTHLGACGSFRLP T0375 122 :DFEKVDLTQFKWIHIEGRNASE 2absA 152 :EDWTTFASGALIFYATAYTLTA T0375 150 :RIDAHNTRQPPEQKIRVSVE 2absA 177 :NALEVAGYAHGIPNAIFTLN T0375 172 :KP 2absA 199 :AP T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 2absA 207 :KDAMQSLLLHTNILFGNEEEFAHLAKV T0375 201 :SAEEALRGLYGRV 2absA 257 :TGALRLLTAGQNT T0375 216 :GAVLVCAWAEEGADALGPDG 2absA 272 :TKLVVMTRGHNPVIAAEQTA T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 2absA 300 :VGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS Number of specific fragments extracted= 12 number of extra gaps= 2 total=4667 Number of alignments=391 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)R165 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 T0375 2 :SQILCVGLVVLDVISLVDK 2absA 13 :MRVFAIGNPILDLVAEVPS T0375 21 :YPKEDSEIRCLSQRWQ 2absA 38 :FLKRGDATLATPEQMR T0375 37 :RGGNASNSCTILSLL 2absA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIINE 2absA 120 :PGQSTGVCAVLINE T0375 103 :SGSRTILYYDRSLPD 2absA 134 :KERTLCTHLGACGSF T0375 119 :SATDFEKVDLTQFKWIHIEGRNASE 2absA 149 :RLPEDWTTFASGALIFYATAYTLTA T0375 144 :QVKMLQRIDAHN 2absA 176 :KNALEVAGYAHG T0375 156 :TRQPPEQK 2absA 189 :PNAIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKV T0375 202 :AEEALRGLYGRVR 2absA 254 :EVCTGALRLLTAG T0375 216 :GAVLVCAWAEEGADALG 2absA 272 :TKLVVMTRGHNPVIAAE T0375 233 :PDG 2absA 291 :ADG T0375 236 :KLLHSDAFPPPR 2absA 295 :VVVHEVGVPVVA T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 2absA 310 :IVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLS Number of specific fragments extracted= 15 number of extra gaps= 1 total=4682 Number of alignments=392 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)R165 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2absA)N248 T0375 2 :SQILCVGLVVLDVISLVDK 2absA 13 :MRVFAIGNPILDLVAEVPS T0375 21 :YPKEDSEIRCLSQRWQ 2absA 38 :FLKRGDATLATPEQMR T0375 37 :RGGNASNSCTILSLL 2absA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTV 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMV T0375 87 :QTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDF 2absA 119 :APGQSTGVCAVLINEKERTLCTHLGACGSFRLPEDWT T0375 126 :VDLTQFKWIHIEGRNASE 2absA 156 :TFASGALIFYATAYTLTA T0375 144 :QVKMLQRIDAHN 2absA 176 :KNALEVAGYAHG T0375 156 :TRQPPEQK 2absA 189 :PNAIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKV T0375 202 :AEE 2absA 249 :KEH T0375 205 :ALRGLYGRVRK 2absA 256 :CTGALRLLTAG T0375 216 :GAVLVCAWAEEGADALG 2absA 272 :TKLVVMTRGHNPVIAAE T0375 233 :PDGK 2absA 291 :ADGT T0375 237 :LLHSDAFPPPR 2absA 296 :VVHEVGVPVVA T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 2absA 310 :IVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSLSF Number of specific fragments extracted= 15 number of extra gaps= 1 total=4697 Number of alignments=393 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)R165 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)R214 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)A271 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE at template residue (2absA)A271 T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQ 2absA 14 :RVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLA T0375 37 :RGGNASNSCTILSLL 2absA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVI 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLI T0375 101 :EASGSRTILYYDRSLP 2absA 132 :NEKERTLCTHLGACGS T0375 118 :VSATDFEKVDLTQFKWIHIEGRNASE 2absA 148 :FRLPEDWTTFASGALIFYATAYTLTA T0375 144 :QVKMLQRIDAHNTRQPPEQK 2absA 177 :NALEVAGYAHGIPNAIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKV T0375 201 :SAEEALRGLYGRV 2absA 257 :TGALRLLTAGQNT T0375 216 :GAVLVCAWAEEGADALGPDG 2absA 272 :TKLVVMTRGHNPVIAAEQTA T0375 236 :KLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2absA 298 :HEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 10 number of extra gaps= 2 total=4707 Number of alignments=394 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)V170 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)E171 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)R214 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)A271 Warning: unaligning (T0375)K215 because of BadResidue code BAD_PEPTIDE at template residue (2absA)A271 T0375 3 :QILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQ 2absA 14 :RVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLA T0375 37 :RGGNASNSCTILSLL 2absA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVL T0375 99 :I 2absA 131 :I T0375 101 :EASGSRTILYYDRSLPDVSA 2absA 132 :NEKERTLCTHLGACGSFRLP T0375 122 :DFEKVDLTQFKWIHIEGRNASE 2absA 152 :EDWTTFASGALIFYATAYTLTA T0375 150 :RIDAHNTRQPPEQKIRVSVE 2absA 177 :NALEVAGYAHGIPNAIFTLN T0375 172 :KP 2absA 199 :AP T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 2absA 207 :KDAMQSLLLHTNILFGNEEEFAHLAKV T0375 201 :SAEEALRGLYGRV 2absA 257 :TGALRLLTAGQNT T0375 216 :GAVLVCAWAEEGADALGPDG 2absA 272 :TKLVVMTRGHNPVIAAEQTA T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2absA 300 :VGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 12 number of extra gaps= 2 total=4719 Number of alignments=395 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)R165 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 T0375 2 :SQILCVGLVVLDVISLVDK 2absA 13 :MRVFAIGNPILDLVAEVPS T0375 21 :YPKEDSEIRCLSQRWQ 2absA 38 :FLKRGDATLATPEQMR T0375 37 :RGGNASNSCTILSLL 2absA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVF 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA T0375 88 :TTGSVPIATVIINE 2absA 120 :PGQSTGVCAVLINE T0375 103 :SGSRTILYYDRSLPD 2absA 134 :KERTLCTHLGACGSF T0375 119 :SATDFEKVDLTQFKWIHIEGRNASE 2absA 149 :RLPEDWTTFASGALIFYATAYTLTA T0375 144 :QVKMLQRIDAHN 2absA 176 :KNALEVAGYAHG T0375 156 :TRQPPEQK 2absA 189 :PNAIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKV T0375 202 :AEEALRGLYGRVR 2absA 254 :EVCTGALRLLTAG T0375 216 :GAVLVCAWAEEGADALG 2absA 272 :TKLVVMTRGHNPVIAAE T0375 233 :PDG 2absA 291 :ADG T0375 236 :KLLHSDAFPPPR 2absA 295 :VVVHEVGVPVVA T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 2absA 310 :IVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGF Number of specific fragments extracted= 15 number of extra gaps= 1 total=4734 Number of alignments=396 # 2absA read from 2absA/merged-a2m # found chain 2absA in template set Warning: unaligning (T0375)I164 because of BadResidue code BAD_PEPTIDE in next template residue (2absA)S198 Warning: unaligning (T0375)R165 because of BadResidue code BAD_PEPTIDE at template residue (2absA)S198 Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2absA)N248 T0375 2 :SQILCVGLVVLDVISLVDK 2absA 13 :MRVFAIGNPILDLVAEVPS T0375 21 :YPKEDSEIRCLSQRWQ 2absA 38 :FLKRGDATLATPEQMR T0375 37 :RGGNASNSCTILSLL 2absA 67 :PGGSALNSVRVVQKL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTV 2absA 85 :PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMV T0375 87 :QTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDF 2absA 119 :APGQSTGVCAVLINEKERTLCTHLGACGSFRLPEDWT T0375 126 :VDLTQFKWIHIEGRNASE 2absA 156 :TFASGALIFYATAYTLTA T0375 144 :QVKMLQRIDAHN 2absA 176 :KNALEVAGYAHG T0375 156 :TRQPPEQK 2absA 189 :PNAIFTLN T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 2absA 199 :APFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKV T0375 202 :AEE 2absA 249 :KEH T0375 205 :ALRGLYGRVRK 2absA 256 :CTGALRLLTAG T0375 216 :GAVLVCAWAEEGADALG 2absA 272 :TKLVVMTRGHNPVIAAE T0375 233 :PDGK 2absA 291 :ADGT T0375 237 :LLHSDAFPPPR 2absA 296 :VVHEVGVPVVA T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 2absA 310 :IVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS Number of specific fragments extracted= 15 number of extra gaps= 1 total=4749 Number of alignments=397 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1u2xA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1u2xA expands to /projects/compbio/data/pdb/1u2x.pdb.gz 1u2xA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0375 read from 1u2xA/merged-a2m # 1u2xA read from 1u2xA/merged-a2m # adding 1u2xA to template set # found chain 1u2xA in template set Warning: unaligning (T0375)R34 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)E114 Warning: unaligning (T0375)W35 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)E114 Warning: unaligning (T0375)Y110 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)Y111 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)Q273 because last residue in template chain is (1u2xA)H472 T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIR 1u2xA 35 :NANIDAIVKLNQETIQNLINAFDPDEVKR T0375 30 :CLSQ 1u2xA 109 :FRYE T0375 36 :QRGGNASNSCTILSLLG 1u2xA 115 :RLGGQAGIIANTLAGLK T0375 53 :APCAFMGSMAPGHV 1u2xA 147 :AELFKKGVLYPVVE T0375 67 :ADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEAS 1u2xA 177 :DPLKINRIFEFRKGLKFKLGDETIEIPNSGRFIVSAR T0375 104 :GSRTIL 1u2xA 215 :ESISRI T0375 112 :DRSLPDVS 1u2xA 223 :REDIKPFL T0375 120 :ATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQP 1u2xA 234 :GKEVDGAIFSGYQGLRTKYSDGKDANYYLRRAKEDIIEFK T0375 161 :EQKIRVSVEVEKPREE 1u2xA 274 :EKDVKIHVEFASVQDR T0375 177 :LFQLFGY 1u2xA 316 :ILSVLGY T0375 184 :GDVVFVSKDVAKHL 1u2xA 326 :ADRIFTYNRLEDSI T0375 198 :GFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSD 1u2xA 370 :NPLSEEELAKSLEFGTTLAAARASLGDIRGPDDYKVGLKVPFNE T0375 242 :AFPPPRVVD 1u2xA 437 :VVIPTRLVQ T0375 251 :TLGAGDTFNASVIFSLSQGRSV 1u2xA 450 :TVGLGDTISAGAFLTYLEFLKR Number of specific fragments extracted= 14 number of extra gaps= 2 total=4763 Number of alignments=398 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)R34 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)E114 Warning: unaligning (T0375)W35 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)E114 Warning: unaligning (T0375)Y110 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)Y111 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)Q273 because last residue in template chain is (1u2xA)H472 T0375 4 :ILC 1u2xA 30 :IYT T0375 9 :LVVLDVI 1u2xA 35 :NANIDAI T0375 16 :SLVDKYPKEDSEI 1u2xA 63 :RRIEEYPREINEP T0375 29 :R 1u2xA 103 :E T0375 30 :CLSQ 1u2xA 109 :FRYE T0375 36 :QRGGNASNSCTILSLLGAPCAFM 1u2xA 115 :RLGGQAGIIANTLAGLKIRKVIA T0375 59 :GSMAPGHV 1u2xA 139 :TPFLPKRL T0375 67 :ADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEAS 1u2xA 177 :DPLKINRIFEFRKGLKFKLGDETIEIPNSGRFIVSAR T0375 104 :GSRTIL 1u2xA 215 :ESISRI T0375 112 :DRSLPDVSATDFEKVDL 1u2xA 223 :REDIKPFLGEIGKEVDG T0375 129 :TQFKWIHIEGRNASEQVKMLQRIDAHNTRQP 1u2xA 243 :SGYQGLRTKYSDGKDANYYLRRAKEDIIEFK T0375 161 :EQKIRVSVEVEKPR 1u2xA 274 :EKDVKIHVEFASVQ T0375 175 :EE 1u2xA 311 :AE T0375 177 :LFQLFGYGDV 1u2xA 316 :ILSVLGYREL T0375 187 :VFVSKDVA 1u2xA 329 :IFTYNRLE T0375 195 :KHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSD 1u2xA 367 :HRDNPLSEEELAKSLEFGTTLAAARASLGDIRGPDDYKVGLKVPFNE T0375 242 :AFPPPRVV 1u2xA 437 :VVIPTRLV T0375 250 :DTLGAGDTFNASVIFSLSQGRSV 1u2xA 449 :LTVGLGDTISAGAFLTYLEFLKR Number of specific fragments extracted= 18 number of extra gaps= 3 total=4781 Number of alignments=399 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set T0375 249 :VDTLGAGDTFNASVIFS 1u2xA 448 :VLTVGLGDTISAGAFLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=4782 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set T0375 193 :VAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1u2xA 391 :RASLGDIRGPDDYKVGLKVPFNERSEYVKLRFEEAKSRLRMRE T0375 239 :HSDAFPPPRVV 1u2xA 434 :YKVVVIPTRLV T0375 250 :DTLGAGDTFNASVIFS 1u2xA 449 :LTVGLGDTISAGAFLT Number of specific fragments extracted= 3 number of extra gaps= 0 total=4785 Number of alignments=400 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)R34 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)E114 Warning: unaligning (T0375)W35 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)E114 Warning: unaligning (T0375)Y110 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)Y111 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)Q273 because last residue in template chain is (1u2xA)H472 T0375 1 :GSQILC 1u2xA 27 :HLSIYT T0375 9 :LVVLDVIS 1u2xA 35 :NANIDAIV T0375 17 :LVDKYPKEDSE 1u2xA 48 :TIQNLINAFDP T0375 28 :IRCLSQ 1u2xA 107 :KTFRYE T0375 36 :QRGGNASNSCTILSLLGA 1u2xA 115 :RLGGQAGIIANTLAGLKI T0375 54 :PCAFMGSMAPGHVADFVLDDL 1u2xA 134 :KVIAYTPFLPKRLAELFKKGV T0375 75 :RRYSVDLRYTVFQTTGSVPIATVIINEASGSRT 1u2xA 185 :FEFRKGLKFKLGDETIEIPNSGRFIVSARFESI T0375 108 :IL 1u2xA 219 :RI T0375 112 :DRSLPDVSATDFEKVD 1u2xA 223 :REDIKPFLGEIGKEVD T0375 128 :LTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPP 1u2xA 242 :FSGYQGLRTKYSDGKDANYYLRRAKEDIIEFKE T0375 161 :EQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGF 1u2xA 310 :EAEIAQILSVLGYRELADRIFTYNRLEDSILGGMIILDE T0375 200 :QSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSD 1u2xA 372 :LSEEELAKSLEFGTTLAAARASLGDIRGPDDYKVGLKVPFNE T0375 242 :AFPPPRVVD 1u2xA 437 :VVIPTRLVQ T0375 251 :TLGAGDTFNASVIFSLSQGRSV 1u2xA 450 :TVGLGDTISAGAFLTYLEFLKR Number of specific fragments extracted= 14 number of extra gaps= 3 total=4799 Number of alignments=401 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)R34 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)E114 Warning: unaligning (T0375)W35 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)E114 Warning: unaligning (T0375)Y110 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)Y111 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)Q273 because last residue in template chain is (1u2xA)H472 T0375 1 :GSQILC 1u2xA 27 :HLSIYT T0375 9 :LVVLDVI 1u2xA 35 :NANIDAI T0375 16 :SLVDKYPKEDSEI 1u2xA 63 :RRIEEYPREINEP T0375 29 :RCLSQ 1u2xA 108 :TFRYE T0375 36 :QRGGNASNSCTILSLLGA 1u2xA 115 :RLGGQAGIIANTLAGLKI T0375 54 :PCAFMGSMAPGHVADFVLDDL 1u2xA 134 :KVIAYTPFLPKRLAELFKKGV T0375 75 :RRYSVDLRYTVFQTTGSVPIATVIINEASGSRT 1u2xA 185 :FEFRKGLKFKLGDETIEIPNSGRFIVSARFESI T0375 108 :IL 1u2xA 219 :RI T0375 112 :DRSLPDVSATDFEKVD 1u2xA 223 :REDIKPFLGEIGKEVD T0375 128 :LTQFKWIHIEGRNASEQVKMLQRIDAHNTRQP 1u2xA 242 :FSGYQGLRTKYSDGKDANYYLRRAKEDIIEFK T0375 161 :EQKIRVSV 1u2xA 274 :EKDVKIHV T0375 169 :EVEKPREELFQLFGYGDVVFVSKDVAK 1u2xA 318 :SVLGYRELADRIFTYNRLEDSILGGMI T0375 196 :HLG 1u2xA 348 :ELN T0375 199 :FQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHS 1u2xA 371 :PLSEEELAKSLEFGTTLAAARASLGDIRGPDDYKVGLKVPFN T0375 241 :DAFPPPRVV 1u2xA 436 :VVVIPTRLV T0375 250 :DTLGAGDTFNASVIFSLSQGRSV 1u2xA 449 :LTVGLGDTISAGAFLTYLEFLKR Number of specific fragments extracted= 16 number of extra gaps= 3 total=4815 Number of alignments=402 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set T0375 249 :VDTLGAGDTFNASVIFS 1u2xA 448 :VLTVGLGDTISAGAFLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=4816 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)W35 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)E114 Warning: unaligning (T0375)Y110 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)Y111 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 T0375 36 :QRGGNASNSCTILSLLGA 1u2xA 115 :RLGGQAGIIANTLAGLKI T0375 54 :PCAFMGSMAPGHVADFVLDDL 1u2xA 134 :KVIAYTPFLPKRLAELFKKGV T0375 75 :RRYSVDLRYTVFQTTGSVPIATVIINEASGSRT 1u2xA 185 :FEFRKGLKFKLGDETIEIPNSGRFIVSARFESI T0375 108 :IL 1u2xA 219 :RI T0375 112 :DRSLPDVSATDFEKVD 1u2xA 223 :REDIKPFLGEIGKEVD T0375 128 :LTQFKWIHIEGRNASEQVKMLQRIDAHNTRQP 1u2xA 242 :FSGYQGLRTKYSDGKDANYYLRRAKEDIIEFK T0375 161 :EQKIRVSVE 1u2xA 274 :EKDVKIHVE T0375 170 :VEKPREELFQLFGYGDVVFVSKDVAKH 1u2xA 319 :VLGYRELADRIFTYNRLEDSILGGMII T0375 197 :LG 1u2xA 349 :LN T0375 199 :FQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHS 1u2xA 371 :PLSEEELAKSLEFGTTLAAARASLGDIRGPDDYKVGLKVPFN T0375 241 :DAFPPPRVV 1u2xA 436 :VVVIPTRLV T0375 250 :DTLGAGDTFNASVIF 1u2xA 449 :LTVGLGDTISAGAFL Number of specific fragments extracted= 12 number of extra gaps= 2 total=4828 Number of alignments=403 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set T0375 249 :VDTLGAGDTFNASVIFS 1u2xA 448 :VLTVGLGDTISAGAFLT Number of specific fragments extracted= 1 number of extra gaps= 0 total=4829 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=4829 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)R34 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)E114 Warning: unaligning (T0375)W35 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)E114 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)Q290 because last residue in template chain is (1u2xA)H472 T0375 1 :GSQILC 1u2xA 27 :HLSIYT T0375 9 :LVVLDVISLVDKYPKEDSEI 1u2xA 35 :NANIDAIVKLNQETIQNLIN T0375 29 :RCLSQ 1u2xA 108 :TFRYE T0375 36 :QRGGNASNSCTILSLL 1u2xA 115 :RLGGQAGIIANTLAGL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 1u2xA 150 :FKKGVLYPVVENGELQFKPIQEAYREGDPLKINRIFEF T0375 91 :SVPIATVIINEA 1u2xA 188 :RKGLKFKLGDET T0375 103 :SGSRTILYYDR 1u2xA 205 :SGRFIVSARFE T0375 114 :SLPD 1u2xA 217 :ISRI T0375 120 :ATDFEKVD 1u2xA 223 :REDIKPFL T0375 128 :LTQFKWIHIEGRNASEQ 1u2xA 234 :GKEVDGAIFSGYQGLRT T0375 145 :VKMLQRIDAHNTRQPPEQ 1u2xA 266 :KEDIIEFKEKDVKIHVEF T0375 163 :KIRVSVEVE 1u2xA 285 :SVQDRKLRK T0375 175 :EELFQLFGYGDVVFVSKDVAKHL 1u2xA 294 :KIITNILPFVDSVGIDEAEIAQI T0375 198 :GF 1u2xA 318 :SV T0375 200 :QSAEEALRGLYGRV 1u2xA 401 :DDYKVGLKVPFNER T0375 216 :GAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1u2xA 415 :SEYVKLRFEEAKSRLRMREYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLE T0375 286 :KCGL 1u2xA 468 :FLKR Number of specific fragments extracted= 17 number of extra gaps= 3 total=4846 Number of alignments=404 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)R34 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)E114 Warning: unaligning (T0375)W35 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)E114 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)Q290 because last residue in template chain is (1u2xA)H472 T0375 29 :RCLSQ 1u2xA 108 :TFRYE T0375 36 :QRGGNASNSCTILSLL 1u2xA 115 :RLGGQAGIIANTLAGL T0375 53 :APCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 1u2xA 151 :KKGVLYPVVENGELQFKPIQEAYREGDPLKINRIFEF T0375 91 :SVPIATVIINE 1u2xA 188 :RKGLKFKLGDE T0375 102 :ASGSRTILYYDR 1u2xA 204 :NSGRFIVSARFE T0375 114 :SLPD 1u2xA 217 :ISRI T0375 120 :ATDFEKVD 1u2xA 223 :REDIKPFL T0375 128 :LTQFKWIHIEGRNASEQ 1u2xA 234 :GKEVDGAIFSGYQGLRT T0375 145 :VKML 1u2xA 267 :EDII T0375 150 :RIDAHNTRQPPEQ 1u2xA 271 :EFKEKDVKIHVEF T0375 167 :SVEV 1u2xA 285 :SVQD T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1u2xA 290 :KLRKKIITNILPFVDSVGIDEAEIAQI T0375 198 :GFQSAEEALRGLYGRV 1u2xA 318 :SVLGYRELADRIFTYN T0375 215 :KGAVL 1u2xA 334 :RLEDS T0375 226 :EGADALGP 1u2xA 341 :GGMIILDE T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQG 1u2xA 433 :EYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLEF T0375 287 :CGL 1u2xA 469 :LKR Number of specific fragments extracted= 17 number of extra gaps= 2 total=4863 Number of alignments=405 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1u2xA)M23 Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)R34 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)E114 Warning: unaligning (T0375)W35 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)E114 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)E226 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)L362 Warning: unaligning (T0375)G227 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)L362 Warning: unaligning (T0375)Q290 because last residue in template chain is (1u2xA)H472 T0375 3 :QILC 1u2xA 29 :SIYT T0375 9 :LVVLDVISLVD 1u2xA 35 :NANIDAIVKLN T0375 25 :DSEI 1u2xA 46 :QETI T0375 29 :RCLSQ 1u2xA 108 :TFRYE T0375 36 :QRGGNASNSCTILSLLGAPCAFMGSMA 1u2xA 115 :RLGGQAGIIANTLAGLKIRKVIAYTPF T0375 66 :VADFVLDDLR 1u2xA 142 :LPKRLAELFK T0375 77 :YSV 1u2xA 152 :KGV T0375 82 :RYTVFQTTG 1u2xA 155 :LYPVVENGE T0375 91 :SVPIATVIINE 1u2xA 178 :PLKINRIFEFR T0375 103 :SG 1u2xA 189 :KG T0375 105 :SRTILYY 1u2xA 206 :GRFIVSA T0375 112 :DR 1u2xA 214 :FE T0375 114 :SLPD 1u2xA 217 :ISRI T0375 120 :ATDFEKVD 1u2xA 223 :REDIKPFL T0375 128 :LTQFKWIHIEGRNASEQ 1u2xA 234 :GKEVDGAIFSGYQGLRT T0375 145 :VKMLQRIDAHNTRQPPEQ 1u2xA 266 :KEDIIEFKEKDVKIHVEF T0375 166 :VSVEVEKPREELF 1u2xA 284 :ASVQDRKLRKKII T0375 179 :QLFGYGDVVFVSKDVAKH 1u2xA 298 :NILPFVDSVGIDEAEIAQ T0375 197 :L 1u2xA 319 :V T0375 198 :GF 1u2xA 321 :GY T0375 200 :QSAEEAL 1u2xA 333 :NRLEDSI T0375 207 :RGLYGR 1u2xA 343 :MIILDE T0375 214 :RKGAVLVCAWAE 1u2xA 349 :LNFEILQVHTTY T0375 228 :ADALGP 1u2xA 363 :MYITHR T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1u2xA 433 :EYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLE T0375 286 :KCGL 1u2xA 468 :FLKR Number of specific fragments extracted= 26 number of extra gaps= 4 total=4889 Number of alignments=406 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1u2xA)M23 Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)R34 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)E114 Warning: unaligning (T0375)W35 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)E114 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)E226 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)L362 Warning: unaligning (T0375)G227 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)L362 Warning: unaligning (T0375)Q290 because last residue in template chain is (1u2xA)H472 T0375 3 :QILC 1u2xA 29 :SIYT T0375 9 :LVVLDVISLVD 1u2xA 35 :NANIDAIVKLN T0375 29 :RCLSQ 1u2xA 108 :TFRYE T0375 36 :QRGGNASNSCTILSLLGAP 1u2xA 115 :RLGGQAGIIANTLAGLKIR T0375 55 :CAFMGSMAPGHVA 1u2xA 135 :VIAYTPFLPKRLA T0375 76 :RY 1u2xA 148 :EL T0375 78 :S 1u2xA 153 :G T0375 81 :LRYTVFQTTG 1u2xA 154 :VLYPVVENGE T0375 91 :SVPIATVIINE 1u2xA 178 :PLKINRIFEFR T0375 103 :SG 1u2xA 189 :KG T0375 105 :SRTILYY 1u2xA 206 :GRFIVSA T0375 112 :DRSLPD 1u2xA 215 :ESISRI T0375 120 :ATDFEKVD 1u2xA 223 :REDIKPFL T0375 128 :LTQFKWIHIEG 1u2xA 234 :GKEVDGAIFSG T0375 139 :RNASEQ 1u2xA 256 :KDANYY T0375 145 :VKMLQRIDAHNTRQPPEQ 1u2xA 266 :KEDIIEFKEKDVKIHVEF T0375 166 :VSVEVEKPREELFQ 1u2xA 284 :ASVQDRKLRKKIIT T0375 180 :LFGYGDVVFVSKDVAKHL 1u2xA 299 :ILPFVDSVGIDEAEIAQI T0375 198 :GF 1u2xA 321 :GY T0375 200 :QSAEEALR 1u2xA 333 :NRLEDSIL T0375 208 :GLYGRV 1u2xA 344 :IILDEL T0375 215 :KGAVLVCAWAE 1u2xA 350 :NFEILQVHTTY T0375 228 :ADALGP 1u2xA 363 :MYITHR T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1u2xA 433 :EYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLE T0375 286 :KCGL 1u2xA 468 :FLKR Number of specific fragments extracted= 25 number of extra gaps= 4 total=4914 Number of alignments=407 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)R207 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)E114 Warning: unaligning (T0375)G208 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)E114 T0375 155 :NTRQPPEQ 1u2xA 51 :NLINAFDP T0375 163 :KIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1u2xA 62 :KRRIEEYPREINEPIDFVARLVHTLKLGKPAAVPL T0375 198 :GF 1u2xA 98 :NE T0375 200 :QSAEEAL 1u2xA 106 :DKTFRYE T0375 209 :LYGRV 1u2xA 115 :RLGGQ T0375 216 :GAVLVCAWAE 1u2xA 120 :AGIIANTLAG T0375 226 :EGADALGP 1u2xA 133 :RKVIAYTP T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1u2xA 433 :EYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLE Number of specific fragments extracted= 8 number of extra gaps= 1 total=4922 Number of alignments=408 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)R34 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)E114 Warning: unaligning (T0375)W35 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)E114 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 T0375 4 :ILC 1u2xA 30 :IYT T0375 9 :LVVLDVISLVDKYPKEDSEI 1u2xA 35 :NANIDAIVKLNQETIQNLIN T0375 29 :RCLSQ 1u2xA 108 :TFRYE T0375 36 :QRGGNASNSCTILSLL 1u2xA 115 :RLGGQAGIIANTLAGL T0375 53 :APCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 1u2xA 151 :KKGVLYPVVENGELQFKPIQEAYREGDPLKINRIFEF T0375 91 :SVPIATVIINE 1u2xA 188 :RKGLKFKLGDE T0375 102 :ASGSRTILYYDR 1u2xA 204 :NSGRFIVSARFE T0375 114 :SLPD 1u2xA 217 :ISRI T0375 120 :ATDFEKVD 1u2xA 223 :REDIKPFL T0375 128 :LTQFKWIHIEGRNASEQ 1u2xA 234 :GKEVDGAIFSGYQGLRT T0375 145 :VKML 1u2xA 267 :EDII T0375 150 :RIDAHNTRQPPEQ 1u2xA 271 :EFKEKDVKIHVEF T0375 167 :SVEV 1u2xA 285 :SVQD T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1u2xA 290 :KLRKKIITNILPFVDSVGIDEAEIAQI T0375 198 :GFQSAEEALRGLYGRV 1u2xA 318 :SVLGYRELADRIFTYN T0375 215 :KGAVL 1u2xA 334 :RLEDS T0375 226 :EGADALGP 1u2xA 341 :GGMIILDE T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLS 1u2xA 433 :EYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYL Number of specific fragments extracted= 18 number of extra gaps= 3 total=4940 Number of alignments=409 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)R34 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)E114 Warning: unaligning (T0375)W35 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)E114 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)E226 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)L362 Warning: unaligning (T0375)G227 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)L362 T0375 2 :SQILC 1u2xA 28 :LSIYT T0375 9 :LVVLDVISLVD 1u2xA 35 :NANIDAIVKLN T0375 25 :DSEI 1u2xA 46 :QETI T0375 29 :RCLSQ 1u2xA 108 :TFRYE T0375 36 :QRGGNASNSCTILSLLGAPCAFMGSMA 1u2xA 115 :RLGGQAGIIANTLAGLKIRKVIAYTPF T0375 66 :VADFVLDDLR 1u2xA 142 :LPKRLAELFK T0375 77 :YSV 1u2xA 152 :KGV T0375 82 :RYTVFQTTG 1u2xA 155 :LYPVVENGE T0375 91 :SVPIATVIINE 1u2xA 178 :PLKINRIFEFR T0375 103 :SG 1u2xA 189 :KG T0375 105 :SRTILYY 1u2xA 206 :GRFIVSA T0375 112 :DR 1u2xA 214 :FE T0375 114 :SLPD 1u2xA 217 :ISRI T0375 120 :ATDFEKVD 1u2xA 223 :REDIKPFL T0375 128 :LTQFKWIHIEGRNASEQ 1u2xA 234 :GKEVDGAIFSGYQGLRT T0375 145 :VKMLQRIDAHNTRQPPEQ 1u2xA 266 :KEDIIEFKEKDVKIHVEF T0375 166 :VSVEVEKPREELF 1u2xA 284 :ASVQDRKLRKKII T0375 179 :QLFGYGDVVFVSKDVAKH 1u2xA 298 :NILPFVDSVGIDEAEIAQ T0375 197 :L 1u2xA 319 :V T0375 198 :GF 1u2xA 321 :GY T0375 200 :QSAEEAL 1u2xA 333 :NRLEDSI T0375 207 :RGLYGR 1u2xA 343 :MIILDE T0375 214 :RKGAVLVCAWAE 1u2xA 349 :LNFEILQVHTTY T0375 228 :ADALGP 1u2xA 363 :MYITHR T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLS 1u2xA 433 :EYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYL Number of specific fragments extracted= 25 number of extra gaps= 4 total=4965 Number of alignments=410 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)R34 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)E114 Warning: unaligning (T0375)W35 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)E114 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)E226 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)L362 Warning: unaligning (T0375)G227 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)L362 T0375 1 :GSQILC 1u2xA 27 :HLSIYT T0375 9 :LVVLDVISLVD 1u2xA 35 :NANIDAIVKLN T0375 29 :RCLSQ 1u2xA 108 :TFRYE T0375 36 :QRGGNASNSCTILSLLGAP 1u2xA 115 :RLGGQAGIIANTLAGLKIR T0375 55 :CAFMGSMAPGHVA 1u2xA 135 :VIAYTPFLPKRLA T0375 76 :RY 1u2xA 148 :EL T0375 78 :S 1u2xA 153 :G T0375 81 :LRYTVFQTTG 1u2xA 154 :VLYPVVENGE T0375 91 :SVPIATVIINE 1u2xA 178 :PLKINRIFEFR T0375 103 :SG 1u2xA 189 :KG T0375 105 :SRTILYY 1u2xA 206 :GRFIVSA T0375 112 :DRSLPD 1u2xA 215 :ESISRI T0375 120 :ATDFEKVD 1u2xA 223 :REDIKPFL T0375 128 :LTQFKWIHIEG 1u2xA 234 :GKEVDGAIFSG T0375 139 :RNASEQ 1u2xA 256 :KDANYY T0375 145 :VKMLQRIDAHNTRQPPEQ 1u2xA 266 :KEDIIEFKEKDVKIHVEF T0375 166 :VSVEVEKPREELFQ 1u2xA 284 :ASVQDRKLRKKIIT T0375 180 :LFGYGDVVFVSKDVAKHL 1u2xA 299 :ILPFVDSVGIDEAEIAQI T0375 198 :GF 1u2xA 321 :GY T0375 200 :QSAEEALR 1u2xA 333 :NRLEDSIL T0375 208 :GLYGRV 1u2xA 344 :IILDEL T0375 215 :KGAVLVCAWAE 1u2xA 350 :NFEILQVHTTY T0375 228 :ADALGP 1u2xA 363 :MYITHR T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1u2xA 433 :EYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLE Number of specific fragments extracted= 24 number of extra gaps= 4 total=4989 Number of alignments=411 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V85 because first residue in template chain is (1u2xA)M23 Warning: unaligning (T0375)A95 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)T96 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)A194 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)E114 Warning: unaligning (T0375)K195 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)E114 Warning: unaligning (T0375)Q290 because last residue in template chain is (1u2xA)H472 T0375 86 :FQTTGSVPI 1u2xA 24 :IPEHLSIYT T0375 97 :VIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPP 1u2xA 35 :NANIDAIVKLNQETIQNLINAFDPDEVKRRIEEYPREINEPIDFVARLVHTLKLGKPAAVPLVN T0375 171 :EKPREELFQLFGY 1u2xA 99 :EKMNEWFDKTFRY T0375 193 :V 1u2xA 112 :E T0375 196 :HL 1u2xA 115 :RL T0375 198 :GFQ 1u2xA 118 :GQA T0375 201 :SAEEALRGLYGRVRKGA 1u2xA 138 :YTPFLPKRLAELFKKGV T0375 218 :VLVCAWAEEGADALGP 1u2xA 156 :YPVVENGELQFKPIQE T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1u2xA 433 :EYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLE T0375 286 :KCGL 1u2xA 468 :FLKR Number of specific fragments extracted= 10 number of extra gaps= 2 total=4999 Number of alignments=412 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)Q290 because last residue in template chain is (1u2xA)H472 T0375 38 :GGNASNSCTILSLL 1u2xA 117 :GGQAGIIANTLAGL T0375 53 :APCAFMGSMAPGHVADFVLDDLRRYS 1u2xA 151 :KKGVLYPVVENGELQFKPIQEAYREG T0375 79 :VDLRYTVFQTTG 1u2xA 179 :LKINRIFEFRKG T0375 91 :SVPIATVII 1u2xA 194 :KLGDETIEI T0375 101 :EASGSRTI 1u2xA 203 :PNSGRFIV T0375 109 :LYYDRSLPD 1u2xA 212 :ARFESISRI T0375 120 :ATDFEKVD 1u2xA 223 :REDIKPFL T0375 128 :L 1u2xA 234 :G T0375 130 :QFKWIHIEGRNA 1u2xA 236 :EVDGAIFSGYQG T0375 142 :S 1u2xA 249 :R T0375 143 :EQVKMLQ 1u2xA 265 :AKEDIIE T0375 151 :IDAHNTRQPPEQ 1u2xA 272 :FKEKDVKIHVEF T0375 165 :RVS 1u2xA 287 :QDR T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1u2xA 290 :KLRKKIITNILPFVDSVGIDEAEIAQI T0375 198 :GFQSAEEALRG 1u2xA 318 :SVLGYRELADR T0375 220 :VCAWAEEGADALGP 1u2xA 329 :IFTYNRLEDSILGG T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1u2xA 433 :EYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLE T0375 286 :KCGL 1u2xA 468 :FLKR Number of specific fragments extracted= 18 number of extra gaps= 1 total=5017 Number of alignments=413 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)E226 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)L362 Warning: unaligning (T0375)G227 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)L362 Warning: unaligning (T0375)Q290 because last residue in template chain is (1u2xA)H472 T0375 3 :QILC 1u2xA 29 :SIYT T0375 9 :LVVLDVISLVDK 1u2xA 35 :NANIDAIVKLNQ T0375 38 :GGNASNSCTILSLLGAPCAFMGSM 1u2xA 117 :GGQAGIIANTLAGLKIRKVIAYTP T0375 65 :HVADFVLDDL 1u2xA 141 :FLPKRLAELF T0375 78 :SV 1u2xA 153 :GV T0375 82 :RYTVFQTTG 1u2xA 155 :LYPVVENGE T0375 91 :SVPIATVIINEAS 1u2xA 178 :PLKINRIFEFRKG T0375 104 :GSRTI 1u2xA 205 :SGRFI T0375 109 :LYYDRSLPD 1u2xA 212 :ARFESISRI T0375 120 :ATDFEKVD 1u2xA 223 :REDIKPFL T0375 128 :LTQFKWIHIEGRN 1u2xA 234 :GKEVDGAIFSGYQ T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1u2xA 264 :RAKEDIIEFKEKDVKIHVEF T0375 166 :VSVEVEKPREELF 1u2xA 284 :ASVQDRKLRKKII T0375 179 :QLFGYGDVVFVSKDV 1u2xA 298 :NILPFVDSVGIDEAE T0375 194 :AKHLGFQ 1u2xA 317 :LSVLGYR T0375 201 :SAEEALRGLYGRVRK 1u2xA 334 :RLEDSILGGMIILDE T0375 216 :GA 1u2xA 350 :NF T0375 218 :VLVCAWAE 1u2xA 353 :ILQVHTTY T0375 228 :ADALGP 1u2xA 363 :MYITHR T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLS 1u2xA 433 :EYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYL T0375 285 :KKCGL 1u2xA 467 :EFLKR Number of specific fragments extracted= 21 number of extra gaps= 3 total=5038 Number of alignments=414 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)G227 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)L362 Warning: unaligning (T0375)A228 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)L362 Warning: unaligning (T0375)Q290 because last residue in template chain is (1u2xA)H472 T0375 3 :QILC 1u2xA 29 :SIYT T0375 9 :LVVLDVISLVDK 1u2xA 35 :NANIDAIVKLNQ T0375 38 :GGNASNSCTILSLLGAP 1u2xA 117 :GGQAGIIANTLAGLKIR T0375 55 :CAFMGSMAP 1u2xA 135 :VIAYTPFLP T0375 68 :DFVL 1u2xA 144 :KRLA T0375 76 :RY 1u2xA 148 :EL T0375 78 :S 1u2xA 153 :G T0375 81 :LRYTVFQTTGSVPI 1u2xA 154 :VLYPVVENGELQFK T0375 95 :ATVII 1u2xA 183 :RIFEF T0375 101 :EAS 1u2xA 188 :RKG T0375 104 :GSRTILYY 1u2xA 205 :SGRFIVSA T0375 112 :DRSLPD 1u2xA 215 :ESISRI T0375 120 :ATDFEKVD 1u2xA 223 :REDIKPFL T0375 128 :LTQFKWIHIEGRN 1u2xA 234 :GKEVDGAIFSGYQ T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1u2xA 264 :RAKEDIIEFKEKDVKIHVEF T0375 166 :VSVEVEKPREELF 1u2xA 284 :ASVQDRKLRKKII T0375 179 :QLFGYGDVVFVSKDVAKHL 1u2xA 298 :NILPFVDSVGIDEAEIAQI T0375 198 :GFQ 1u2xA 321 :GYR T0375 201 :SAEEALRGLYGRVRK 1u2xA 334 :RLEDSILGGMIILDE T0375 216 :GAVLVCAWAEE 1u2xA 350 :NFEILQVHTTY T0375 229 :DALGP 1u2xA 363 :MYITH T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1u2xA 433 :EYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLE T0375 286 :KCGL 1u2xA 468 :FLKR Number of specific fragments extracted= 23 number of extra gaps= 3 total=5061 Number of alignments=415 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)Y210 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)E114 Warning: unaligning (T0375)G211 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)E114 T0375 155 :NTRQPPEQ 1u2xA 51 :NLINAFDP T0375 163 :KIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1u2xA 62 :KRRIEEYPREINEPIDFVARLVHTLKLGKPAAVPL T0375 198 :GFQ 1u2xA 98 :NEK T0375 201 :SAEEALRGL 1u2xA 104 :WFDKTFRYE T0375 212 :RVRKGA 1u2xA 115 :RLGGQA T0375 218 :VLVCAWAE 1u2xA 122 :IIANTLAG T0375 226 :EGADALGP 1u2xA 133 :RKVIAYTP T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1u2xA 433 :EYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLE Number of specific fragments extracted= 8 number of extra gaps= 1 total=5069 Number of alignments=416 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 T0375 5 :LC 1u2xA 31 :YT T0375 9 :LVVLDVISLVDKYPKEDSEIRCLSQRWQR 1u2xA 35 :NANIDAIVKLNQETIQNLINAFDPDEVKR T0375 38 :GGNASNSCTILSLL 1u2xA 117 :GGQAGIIANTLAGL T0375 53 :APCAFMGSMAPGHVADFVLDDLRRYS 1u2xA 151 :KKGVLYPVVENGELQFKPIQEAYREG T0375 79 :VDLRYTVFQTTG 1u2xA 179 :LKINRIFEFRKG T0375 91 :SVPIATVII 1u2xA 194 :KLGDETIEI T0375 101 :EASGSRTI 1u2xA 203 :PNSGRFIV T0375 109 :LYYDRSLPD 1u2xA 212 :ARFESISRI T0375 120 :ATDFEKVD 1u2xA 223 :REDIKPFL T0375 128 :L 1u2xA 234 :G T0375 130 :QFKWIHIEGRNA 1u2xA 236 :EVDGAIFSGYQG T0375 142 :S 1u2xA 249 :R T0375 143 :EQVKMLQ 1u2xA 265 :AKEDIIE T0375 151 :IDAHNTRQPPEQ 1u2xA 272 :FKEKDVKIHVEF T0375 165 :RVS 1u2xA 287 :QDR T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1u2xA 290 :KLRKKIITNILPFVDSVGIDEAEIAQI T0375 198 :GFQSAEEALRG 1u2xA 318 :SVLGYRELADR T0375 220 :VCAWAEEGADALGP 1u2xA 329 :IFTYNRLEDSILGG T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLS 1u2xA 433 :EYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYL Number of specific fragments extracted= 19 number of extra gaps= 2 total=5088 Number of alignments=417 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)E226 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)L362 Warning: unaligning (T0375)G227 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)L362 T0375 3 :QILC 1u2xA 29 :SIYT T0375 9 :LVVLDVISLVDK 1u2xA 35 :NANIDAIVKLNQ T0375 38 :GGNASNSCTILSLLGAPCAFMGSM 1u2xA 117 :GGQAGIIANTLAGLKIRKVIAYTP T0375 65 :HVADFVLDDL 1u2xA 141 :FLPKRLAELF T0375 78 :SV 1u2xA 153 :GV T0375 82 :RYTVFQTTG 1u2xA 155 :LYPVVENGE T0375 91 :SVPIATVIINEAS 1u2xA 178 :PLKINRIFEFRKG T0375 104 :GSRTI 1u2xA 205 :SGRFI T0375 109 :LYYDRSLPD 1u2xA 212 :ARFESISRI T0375 120 :ATDFEKVD 1u2xA 223 :REDIKPFL T0375 128 :LTQFKWIHIEGRN 1u2xA 234 :GKEVDGAIFSGYQ T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1u2xA 264 :RAKEDIIEFKEKDVKIHVEF T0375 166 :VSVEVEKPREELF 1u2xA 284 :ASVQDRKLRKKII T0375 179 :QLFGYGDVVFVSKDV 1u2xA 298 :NILPFVDSVGIDEAE T0375 194 :AKHLGFQ 1u2xA 317 :LSVLGYR T0375 201 :SAEEALRGLYGRVRK 1u2xA 334 :RLEDSILGGMIILDE T0375 216 :GA 1u2xA 350 :NF T0375 218 :VLVCAWAE 1u2xA 353 :ILQVHTTY T0375 228 :ADALGP 1u2xA 363 :MYITHR T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLS 1u2xA 433 :EYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYL Number of specific fragments extracted= 20 number of extra gaps= 3 total=5108 Number of alignments=418 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)G227 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)L362 Warning: unaligning (T0375)A228 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)L362 T0375 2 :SQILC 1u2xA 28 :LSIYT T0375 9 :LVVLDVISLVDK 1u2xA 35 :NANIDAIVKLNQ T0375 38 :GGNASNSCTILSLLGAP 1u2xA 117 :GGQAGIIANTLAGLKIR T0375 55 :CAFMGSMAP 1u2xA 135 :VIAYTPFLP T0375 68 :DFVL 1u2xA 144 :KRLA T0375 76 :RY 1u2xA 148 :EL T0375 78 :S 1u2xA 153 :G T0375 81 :LRYTVFQTTGSVPI 1u2xA 154 :VLYPVVENGELQFK T0375 95 :ATVII 1u2xA 183 :RIFEF T0375 101 :EAS 1u2xA 188 :RKG T0375 104 :GSRTILYY 1u2xA 205 :SGRFIVSA T0375 112 :DRSLPD 1u2xA 215 :ESISRI T0375 120 :ATDFEKVD 1u2xA 223 :REDIKPFL T0375 128 :LTQFKWIHIEGRN 1u2xA 234 :GKEVDGAIFSGYQ T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1u2xA 264 :RAKEDIIEFKEKDVKIHVEF T0375 166 :VSVEVEKPREELF 1u2xA 284 :ASVQDRKLRKKII T0375 179 :QLFGYGDVVFVSKDVAKHL 1u2xA 298 :NILPFVDSVGIDEAEIAQI T0375 198 :GFQ 1u2xA 321 :GYR T0375 201 :SAEEALRGLYGRVRK 1u2xA 334 :RLEDSILGGMIILDE T0375 216 :GAVLVCAWAEE 1u2xA 350 :NFEILQVHTTY T0375 229 :DALGP 1u2xA 363 :MYITH T0375 234 :DGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1u2xA 433 :EYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLE Number of specific fragments extracted= 22 number of extra gaps= 3 total=5130 Number of alignments=419 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)Q290 because last residue in template chain is (1u2xA)H472 T0375 37 :RGGNASNSCTILSLL 1u2xA 116 :LGGQAGIIANTLAGL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIA 1u2xA 150 :FKKGVLYPVVENGELQFKPIQEAYREGDPLKINRIFEFRKGLKF T0375 96 :TVIINEASGSRTILYYDRSLPD 1u2xA 199 :TIEIPNSGRFIVSARFESISRI T0375 120 :ATDF 1u2xA 223 :REDI T0375 124 :EKVDLTQFKWIHIEGRNASE 1u2xA 230 :LGEIGKEVDGAIFSGYQGLR T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1u2xA 263 :RRAKEDIIEFKEKDVKIHVEFASVQDRKLRKKIITNILPFVDSVGIDEAEIAQILSV T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1u2xA 400 :PDDYKVGLKVPFNERSEYVKLRFEEAKSRLRMREYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLE T0375 286 :KCGL 1u2xA 468 :FLKR Number of specific fragments extracted= 8 number of extra gaps= 1 total=5138 Number of alignments=420 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)Q290 because last residue in template chain is (1u2xA)H472 T0375 37 :RGGNASNSCTILSLL 1u2xA 116 :LGGQAGIIANTLAGL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 1u2xA 150 :FKKGVLYPVVENGELQFKPIQEAYREGDPLKINRIFEF T0375 91 :SVPIATVIINEA 1u2xA 188 :RKGLKFKLGDET T0375 103 :SGSRTILYYDRSLPD 1u2xA 206 :GRFIVSARFESISRI T0375 120 :ATDF 1u2xA 223 :REDI T0375 124 :EKVDLTQFKWIHIEGRNASE 1u2xA 230 :LGEIGKEVDGAIFSGYQGLR T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1u2xA 263 :RRAKEDIIEFKEKDVKIHVEFASV T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1u2xA 293 :KKIITNILPFVDSVGIDEAEIAQILSV T0375 236 :KLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1u2xA 435 :KVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLE T0375 287 :CGL 1u2xA 469 :LKR Number of specific fragments extracted= 10 number of extra gaps= 1 total=5148 Number of alignments=421 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)E226 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)L362 Warning: unaligning (T0375)G227 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)L362 Warning: unaligning (T0375)Q290 because last residue in template chain is (1u2xA)H472 T0375 2 :SQILC 1u2xA 28 :LSIYT T0375 9 :LVVLDVISLVDK 1u2xA 35 :NANIDAIVKLNQ T0375 37 :RGGNASNSCTILSLLGAPCAFMGSMAPG 1u2xA 116 :LGGQAGIIANTLAGLKIRKVIAYTPFLP T0375 68 :DFVLDD 1u2xA 144 :KRLAEL T0375 77 :YSV 1u2xA 152 :KGV T0375 80 :DLRYTVFQTTGSVPIATVIINEA 1u2xA 168 :PIQEAYREGDPLKINRIFEFRKG T0375 103 :SGSRTILYYDR 1u2xA 205 :SGRFIVSARFE T0375 114 :SLPD 1u2xA 217 :ISRI T0375 120 :ATDF 1u2xA 223 :REDI T0375 124 :EKVDLTQFKWIHIEGRNASE 1u2xA 230 :LGEIGKEVDGAIFSGYQGLR T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1u2xA 263 :RRAKEDIIEFKEKDVKIHVEFASVQDRKLRKKIITNILPFVDSVGIDEAEIAQILSV T0375 202 :AEEALRGLYGRVRKGAVLVCAWAE 1u2xA 337 :DSILGGMIILDELNFEILQVHTTY T0375 228 :ADALGPDG 1u2xA 363 :MYITHRDN T0375 237 :LLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1u2xA 436 :VVVIPTRLVQNPVLTVGLGDTISAGAFLTYLE T0375 286 :KCGL 1u2xA 468 :FLKR Number of specific fragments extracted= 15 number of extra gaps= 3 total=5163 Number of alignments=422 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)E226 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)L362 Warning: unaligning (T0375)G227 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)L362 Warning: unaligning (T0375)Q290 because last residue in template chain is (1u2xA)H472 T0375 2 :SQILC 1u2xA 28 :LSIYT T0375 9 :LVVLDVISLVDK 1u2xA 35 :NANIDAIVKLNQ T0375 37 :RGGNASNSCTILSLLGAPCAFMGSMAPG 1u2xA 116 :LGGQAGIIANTLAGLKIRKVIAYTPFLP T0375 68 :D 1u2xA 144 :K T0375 73 :DLRRY 1u2xA 145 :RLAEL T0375 78 :SV 1u2xA 153 :GV T0375 80 :DLRYTVFQTTGSVPIATVIINEA 1u2xA 168 :PIQEAYREGDPLKINRIFEFRKG T0375 103 :SGSRTILYYDR 1u2xA 204 :NSGRFIVSARF T0375 114 :SLPD 1u2xA 217 :ISRI T0375 120 :ATDF 1u2xA 223 :REDI T0375 124 :EKVDLTQFKWIHIEGRNASE 1u2xA 230 :LGEIGKEVDGAIFSGYQGLR T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1u2xA 263 :RRAKEDIIEFKEKDVKIHVEFASVQDRKLRKKIITNILPFVDSVGIDEAEIAQILSV T0375 202 :AEEALRGLYGRVRKGAVLVCAWAE 1u2xA 337 :DSILGGMIILDELNFEILQVHTTY T0375 228 :ADALGPDG 1u2xA 363 :MYITHRDN T0375 236 :KLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1u2xA 435 :KVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLE T0375 286 :KCGL 1u2xA 468 :FLKR Number of specific fragments extracted= 16 number of extra gaps= 3 total=5179 Number of alignments=423 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 T0375 97 :VIINEASGSRTILYYDRSLPD 1u2xA 200 :IEIPNSGRFIVSARFESISRI T0375 120 :ATDF 1u2xA 223 :REDI T0375 124 :EKVDLTQFKWIHIEGRNASE 1u2xA 230 :LGEIGKEVDGAIFSGYQGLR T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVC 1u2xA 263 :RRAKEDIIEFKEKDVKIHVEFASVQDRKLRKKIITNILPFVDSVGIDEAEIAQILSVLGYRELADRIFTYNRLEDSIL Number of specific fragments extracted= 4 number of extra gaps= 1 total=5183 Number of alignments=424 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 T0375 97 :VIINEASGSRTILYYDRSLPD 1u2xA 200 :IEIPNSGRFIVSARFESISRI T0375 120 :ATDF 1u2xA 223 :REDI T0375 124 :EKVDLTQFKWIHIEGRNASE 1u2xA 230 :LGEIGKEVDGAIFSGYQGLR T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1u2xA 263 :RRAKEDIIEFKEKDVKIHVEFASV T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLV 1u2xA 293 :KKIITNILPFVDSVGIDEAEIAQILSVLGYRELADRIFTYNRLEDSI Number of specific fragments extracted= 5 number of extra gaps= 1 total=5188 Number of alignments=425 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)E226 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)L362 Warning: unaligning (T0375)G227 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)L362 T0375 2 :SQILC 1u2xA 28 :LSIYT T0375 9 :LVVLDVISLVDK 1u2xA 35 :NANIDAIVKLNQ T0375 37 :RGGNASNSCTILSLLGAPCAFMGSMAPG 1u2xA 116 :LGGQAGIIANTLAGLKIRKVIAYTPFLP T0375 68 :DFVLDD 1u2xA 144 :KRLAEL T0375 77 :YSV 1u2xA 152 :KGV T0375 80 :DLRYTVFQTTGSVPIATVIINEA 1u2xA 168 :PIQEAYREGDPLKINRIFEFRKG T0375 103 :SGSRTILYYDR 1u2xA 205 :SGRFIVSARFE T0375 114 :SLPD 1u2xA 217 :ISRI T0375 120 :ATDF 1u2xA 223 :REDI T0375 124 :EKVDLTQFKWIHIEGRNASE 1u2xA 230 :LGEIGKEVDGAIFSGYQGLR T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1u2xA 263 :RRAKEDIIEFKEKDVKIHVEFASVQDRKLRKKIITNILPFVDSVGIDEAEIAQILSV T0375 202 :AEEALRGLYGRVRKGAVLVCAWAE 1u2xA 337 :DSILGGMIILDELNFEILQVHTTY T0375 228 :ADALGPDG 1u2xA 363 :MYITHRDN T0375 237 :LLHSDAFPPPRVVDTLGAGDTFNASVIFSLS 1u2xA 436 :VVVIPTRLVQNPVLTVGLGDTISAGAFLTYL Number of specific fragments extracted= 14 number of extra gaps= 3 total=5202 Number of alignments=426 # 1u2xA read from 1u2xA/merged-a2m # found chain 1u2xA in template set Warning: unaligning (T0375)V7 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)Y34 Warning: unaligning (T0375)G8 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)Y34 Warning: unaligning (T0375)V118 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1u2xA)T222 Warning: unaligning (T0375)S119 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1u2xA)T222 Warning: unaligning (T0375)E226 because of BadResidue code BAD_PEPTIDE in next template residue (1u2xA)L362 Warning: unaligning (T0375)G227 because of BadResidue code BAD_PEPTIDE at template residue (1u2xA)L362 T0375 2 :SQILC 1u2xA 28 :LSIYT T0375 9 :LVVLDVISLVDK 1u2xA 35 :NANIDAIVKLNQ T0375 37 :RGGNASNSCTILSLLGAPCAFMGSMAPG 1u2xA 116 :LGGQAGIIANTLAGLKIRKVIAYTPFLP T0375 68 :D 1u2xA 144 :K T0375 73 :DLRRY 1u2xA 145 :RLAEL T0375 78 :SV 1u2xA 153 :GV T0375 80 :DLRYTVFQTTGSVPIATVIINEA 1u2xA 168 :PIQEAYREGDPLKINRIFEFRKG T0375 103 :SGSRTILYYDR 1u2xA 204 :NSGRFIVSARF T0375 114 :SLPD 1u2xA 217 :ISRI T0375 120 :ATDF 1u2xA 223 :REDI T0375 124 :EKVDLTQFKWIHIEGRNASE 1u2xA 230 :LGEIGKEVDGAIFSGYQGLR T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1u2xA 263 :RRAKEDIIEFKEKDVKIHVEFASVQDRKLRKKIITNILPFVDSVGIDEAEIAQILSV T0375 202 :AEEALRGLYGRVRKGAVLVCAWAE 1u2xA 337 :DSILGGMIILDELNFEILQVHTTY T0375 228 :ADALGPDG 1u2xA 363 :MYITHRDN T0375 236 :KLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1u2xA 435 :KVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLE Number of specific fragments extracted= 15 number of extra gaps= 3 total=5217 Number of alignments=427 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kyhA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0375 read from 1kyhA/merged-a2m # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Warning: unaligning (T0375)G8 because first residue in template chain is (1kyhA)N2 Warning: unaligning (T0375)E24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kyhA)T26 Warning: unaligning (T0375)D25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kyhA)T26 T0375 9 :LVVLDVISLVDKYPK 1kyhA 3 :VPFWTEEHVRATLPE T0375 26 :SEIRCLSQRWQRGGNASNSCT 1kyhA 27 :YGTALLLAGSDDMPGAALLAG T0375 48 :LSLLGAP 1kyhA 48 :LGAMRSG T0375 92 :VPIATVIIN 1kyhA 55 :LGKLVIGTS T0375 102 :ASGSRTILYYDRSLPDVSATDF 1kyhA 64 :ENVIPLIVPVLPEATYWRDGWK T0375 124 :EKVD 1kyhA 87 :AADA T0375 128 :LTQFKWIHI 1kyhA 93 :EETYRAIAI T0375 138 :G 1kyhA 102 :G T0375 139 :RNASEQVKMLQRI 1kyhA 105 :LPQTESVQQAVDH T0375 152 :DAHNTRQ 1kyhA 130 :GALAKRT T0375 178 :FQLFGYGDVVFVS 1kyhA 137 :YPKREGPVILTPH T0375 191 :KDVAKHLG 1kyhA 151 :GEFFRMTG T0375 199 :FQSAEEALRGLYGRV 1kyhA 165 :QKKRAEYAKEWAAQL T0375 215 :KGAVLVC 1kyhA 180 :QTVIVLK T0375 224 :AEEGA 1kyhA 187 :GNQTV T0375 231 :LGPDGKLLHSDAFPPP 1kyhA 192 :IAFPDGDCWLNPTGNG T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFG 1kyhA 208 :ALAKGGTGDTLTGMILGMLCCHEDPKHAVLNA T0375 280 :CQVAGKKCGLQGFDGIV 1kyhA 244 :GACAELWTDEHSAHTLL Number of specific fragments extracted= 18 number of extra gaps= 0 total=5235 Number of alignments=428 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Warning: unaligning (T0375)G8 because first residue in template chain is (1kyhA)N2 Warning: unaligning (T0375)E24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kyhA)T26 Warning: unaligning (T0375)D25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kyhA)T26 T0375 9 :LVVLDVISLVDKYPK 1kyhA 3 :VPFWTEEHVRATLPE T0375 26 :SEIRCLSQRWQRGGNASNSCT 1kyhA 27 :YGTALLLAGSDDMPGAALLAG T0375 48 :LSLLGAP 1kyhA 48 :LGAMRSG T0375 92 :VPIATVIIN 1kyhA 55 :LGKLVIGTS T0375 102 :ASGSRTILYYDRSLPDVSATDFE 1kyhA 64 :ENVIPLIVPVLPEATYWRDGWKK T0375 125 :KVD 1kyhA 88 :ADA T0375 128 :LTQFKWIHI 1kyhA 93 :EETYRAIAI T0375 138 :G 1kyhA 102 :G T0375 139 :RNASEQV 1kyhA 105 :LPQTESV T0375 146 :KMLQRIDAHNTRQ 1kyhA 113 :QAVDHVLTADCPV T0375 178 :FQLFGYGDVVFVSKD 1kyhA 137 :YPKREGPVILTPHPG T0375 193 :VAKHLG 1kyhA 153 :FFRMTG T0375 199 :FQSAEEALRGLYGRV 1kyhA 165 :QKKRAEYAKEWAAQL T0375 215 :KGAVLVC 1kyhA 180 :QTVIVLK T0375 224 :AEEGA 1kyhA 187 :GNQTV T0375 231 :LGPDGKLLHSDAFPPP 1kyhA 192 :IAFPDGDCWLNPTGNG T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFG 1kyhA 208 :ALAKGGTGDTLTGMILGMLCCHEDPKHAVLNA T0375 280 :CQVAGKKCGLQGFDGIV 1kyhA 244 :GACAELWTDEHSAHTLL Number of specific fragments extracted= 18 number of extra gaps= 0 total=5253 Number of alignments=429 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 68 :DFVLDDLRRYSVD 1kyhA 42 :AALLAGLGAMRSG T0375 92 :VPIATVIIN 1kyhA 55 :LGKLVIGTS T0375 102 :ASGSRTILYYDRSLPDVSATDF 1kyhA 64 :ENVIPLIVPVLPEATYWRDGWK T0375 124 :EKVD 1kyhA 87 :AADA T0375 128 :LTQFKWIHI 1kyhA 93 :EETYRAIAI T0375 138 :G 1kyhA 102 :G T0375 139 :RNASEQVKMLQRI 1kyhA 105 :LPQTESVQQAVDH T0375 152 :DAHNTRQ 1kyhA 130 :GALAKRT T0375 178 :FQLFGYGDVVFVS 1kyhA 137 :YPKREGPVILTPH T0375 191 :KDVAKHLG 1kyhA 151 :GEFFRMTG T0375 199 :FQSAEEALRGLYGRV 1kyhA 165 :QKKRAEYAKEWAAQL T0375 215 :KGAVLVC 1kyhA 180 :QTVIVLK T0375 224 :AEEGA 1kyhA 187 :GNQTV T0375 231 :LGPDGKLLHSDAFPPP 1kyhA 192 :IAFPDGDCWLNPTGNG T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFG 1kyhA 208 :ALAKGGTGDTLTGMILGMLCCHEDPKHAVLNA T0375 280 :CQVAGKKCGLQGFDGI 1kyhA 244 :GACAELWTDEHSAHTL Number of specific fragments extracted= 16 number of extra gaps= 0 total=5269 Number of alignments=430 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 67 :ADFVLDDLRRYSVD 1kyhA 41 :GAALLAGLGAMRSG T0375 92 :VPIATVIIN 1kyhA 55 :LGKLVIGTS T0375 102 :ASGSRTILYYDRSLPDVSATDFE 1kyhA 64 :ENVIPLIVPVLPEATYWRDGWKK T0375 125 :KVD 1kyhA 88 :ADA T0375 128 :LTQFKWIHI 1kyhA 93 :EETYRAIAI T0375 138 :G 1kyhA 102 :G T0375 139 :RNASEQV 1kyhA 105 :LPQTESV T0375 146 :KMLQRIDAHNTRQ 1kyhA 113 :QAVDHVLTADCPV T0375 178 :FQLFGYGDVVFVSKD 1kyhA 137 :YPKREGPVILTPHPG T0375 193 :VAKHLG 1kyhA 153 :FFRMTG T0375 199 :FQSAEEALRGLYGRV 1kyhA 165 :QKKRAEYAKEWAAQL T0375 215 :KGAVLVC 1kyhA 180 :QTVIVLK T0375 224 :AEEGA 1kyhA 187 :GNQTV T0375 231 :LGPDGKLLHSDAFPPP 1kyhA 192 :IAFPDGDCWLNPTGNG T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFG 1kyhA 208 :ALAKGGTGDTLTGMILGMLCCHEDPKHAVLNA T0375 280 :CQVAGKKCGLQGFD 1kyhA 244 :GACAELWTDEHSAH Number of specific fragments extracted= 16 number of extra gaps= 0 total=5285 Number of alignments=431 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Warning: unaligning (T0375)S2 because first residue in template chain is (1kyhA)N2 Warning: unaligning (T0375)V18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kyhA)T26 Warning: unaligning (T0375)L50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kyhA)T26 T0375 3 :QILCVGLVVLDVISL 1kyhA 3 :VPFWTEEHVRATLPE T0375 51 :LGAPCAFMGSMAPGH 1kyhA 27 :YGTALLLAGSDDMPG T0375 68 :DFVLDDLRRYSVDLRYTVF 1kyhA 42 :AALLAGLGAMRSGLGKLVI T0375 88 :TTGSVPIAT 1kyhA 61 :GTSENVIPL T0375 101 :EASGSRTILYYD 1kyhA 70 :IVPVLPEATYWR T0375 117 :DVSATDFEKV 1kyhA 82 :DGWKKAADAQ T0375 128 :LTQ 1kyhA 92 :LEE T0375 131 :FKWIHIE 1kyhA 96 :YRAIAIG T0375 138 :GRNAS 1kyhA 104 :GLPQT T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1kyhA 109 :ESVQQAVDHVLTADCPVILDAGALAKRTYPKREGPVILTPHPGEFFRM T0375 198 :G 1kyhA 158 :G T0375 199 :FQSAEEALRGLYGRVR 1kyhA 165 :QKKRAEYAKEWAAQLQ T0375 216 :GAVLVC 1kyhA 181 :TVIVLK T0375 224 :AEEGA 1kyhA 187 :GNQTV T0375 231 :LGPDGKLLHSDAFPPP 1kyhA 192 :IAFPDGDCWLNPTGNG T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFG 1kyhA 208 :ALAKGGTGDTLTGMILGMLCCHEDPKHAVLNA T0375 280 :CQVAGKKCGLQGFDGIV 1kyhA 244 :GACAELWTDEHSAHTLL Number of specific fragments extracted= 17 number of extra gaps= 0 total=5302 Number of alignments=432 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Warning: unaligning (T0375)S2 because first residue in template chain is (1kyhA)N2 Warning: unaligning (T0375)V18 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kyhA)T26 Warning: unaligning (T0375)L50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kyhA)T26 T0375 3 :QILCVGLVVLDVISL 1kyhA 3 :VPFWTEEHVRATLPE T0375 51 :LGAPCAFMGSMAPGH 1kyhA 27 :YGTALLLAGSDDMPG T0375 68 :DFVLDDLRRYSVDLRYTVF 1kyhA 42 :AALLAGLGAMRSGLGKLVI T0375 91 :SVPIATVII 1kyhA 61 :GTSENVIPL T0375 101 :EASGSRTILYYD 1kyhA 70 :IVPVLPEATYWR T0375 117 :DVSATDFEKV 1kyhA 82 :DGWKKAADAQ T0375 128 :LTQ 1kyhA 92 :LEE T0375 131 :FKWIHIE 1kyhA 96 :YRAIAIG T0375 138 :GRNASEQVKMLQRIDA 1kyhA 104 :GLPQTESVQQAVDHVL T0375 161 :EQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVA 1kyhA 120 :TADCPVILDAGALAKRTYPKREGPVILTPHPGEF T0375 195 :KHLG 1kyhA 155 :RMTG T0375 199 :FQSAEEALRGLYGRVR 1kyhA 165 :QKKRAEYAKEWAAQLQ T0375 216 :GAVLVC 1kyhA 181 :TVIVLK T0375 224 :AEEGA 1kyhA 187 :GNQTV T0375 231 :LGPDGKLLHSDAFPPP 1kyhA 192 :IAFPDGDCWLNPTGNG T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFG 1kyhA 208 :ALAKGGTGDTLTGMILGMLCCHEDPKHAVLNA T0375 280 :CQVAGKKCGLQGFDGIV 1kyhA 244 :GACAELWTDEHSAHTLL Number of specific fragments extracted= 17 number of extra gaps= 0 total=5319 Number of alignments=433 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 68 :DFVLDDLRRYSVDLRYTVF 1kyhA 42 :AALLAGLGAMRSGLGKLVI T0375 88 :TTGSVPIAT 1kyhA 61 :GTSENVIPL T0375 101 :EASGSRTILYYD 1kyhA 70 :IVPVLPEATYWR T0375 117 :DVSATDFEKV 1kyhA 82 :DGWKKAADAQ T0375 128 :LTQ 1kyhA 92 :LEE T0375 131 :FKWIHIE 1kyhA 96 :YRAIAIG T0375 138 :GRNAS 1kyhA 104 :GLPQT T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1kyhA 109 :ESVQQAVDHVLTADCPVILDAGALAKRTYPKREGPVILTPHPGEFFRM T0375 198 :G 1kyhA 158 :G T0375 199 :FQSAEEALRGLYGRVR 1kyhA 165 :QKKRAEYAKEWAAQLQ T0375 216 :GAVLVC 1kyhA 181 :TVIVLK T0375 224 :AEEGA 1kyhA 187 :GNQTV T0375 231 :LGPDGKLLHSDAFPPP 1kyhA 192 :IAFPDGDCWLNPTGNG T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFG 1kyhA 208 :ALAKGGTGDTLTGMILGMLCCHEDPKHAVLNA T0375 280 :CQVAGKKCGLQG 1kyhA 244 :GACAELWTDEHS Number of specific fragments extracted= 15 number of extra gaps= 0 total=5334 Number of alignments=434 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 64 :G 1kyhA 35 :G T0375 65 :HVADFVLDDLRRYSVDLRYTVF 1kyhA 39 :MPGAALLAGLGAMRSGLGKLVI T0375 91 :SVPIATVII 1kyhA 61 :GTSENVIPL T0375 101 :EASGSRTILYYD 1kyhA 70 :IVPVLPEATYWR T0375 117 :DVSATDFEKV 1kyhA 82 :DGWKKAADAQ T0375 128 :LTQ 1kyhA 92 :LEE T0375 131 :FKWIHIE 1kyhA 96 :YRAIAIG T0375 138 :GRNASEQVKMLQRIDA 1kyhA 104 :GLPQTESVQQAVDHVL T0375 161 :EQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVA 1kyhA 120 :TADCPVILDAGALAKRTYPKREGPVILTPHPGEF T0375 195 :KHLG 1kyhA 155 :RMTG T0375 199 :FQSAEEALRGLYGRVR 1kyhA 165 :QKKRAEYAKEWAAQLQ T0375 216 :GAVLVC 1kyhA 181 :TVIVLK T0375 224 :AEEGA 1kyhA 187 :GNQTV T0375 231 :LGPDGKLLHSDAFPPP 1kyhA 192 :IAFPDGDCWLNPTGNG T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFG 1kyhA 208 :ALAKGGTGDTLTGMILGMLCCHEDPKHAVLNA T0375 280 :CQVAGKKCGLQGF 1kyhA 244 :GACAELWTDEHSA Number of specific fragments extracted= 16 number of extra gaps= 0 total=5350 Number of alignments=435 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 1 :GSQILCVG 1kyhA 28 :GTALLLAG T0375 9 :LVVLDVISLVDKYPKEDSEIRCLSQ 1kyhA 61 :GTSENVIPLIVPVLPEATYWRDGWK T0375 106 :RTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNA 1kyhA 86 :KAADAQLEETYRAIAIGPGLPQTESVQQAVDHVLTA T0375 146 :KMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLF 1kyhA 122 :DCPVILDAGALAKRTYPKREGPVILTPHPGEFFRMT T0375 192 :DVAKHLGFQSAEEALRGLYGRVRKGAVL 1kyhA 158 :GVPVNELQKKRAEYAKEWAAQLQTVIVL T0375 226 :EGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFG 1kyhA 186 :KGNQTVIAFPDGDCWLNPTGNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNA T0375 280 :CQVAGKKCGLQGFDGIV 1kyhA 247 :AELWTDEHSAHTLLAHE Number of specific fragments extracted= 7 number of extra gaps= 0 total=5357 Number of alignments=436 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 1 :GSQILCVG 1kyhA 28 :GTALLLAG T0375 9 :LVVLDVISLVDKYPKEDSEIRCLSQ 1kyhA 61 :GTSENVIPLIVPVLPEATYWRDGWK T0375 58 :MGSMAPGHVADFVLDD 1kyhA 114 :AVDHVLTADCPVILDA T0375 152 :DAHNTRQ 1kyhA 130 :GALAKRT T0375 162 :QKIRVSVEVEKPREELFQLF 1kyhA 138 :PKREGPVILTPHPGEFFRMT T0375 198 :GF 1kyhA 160 :PV T0375 200 :QSAEEALRGLYGRVRKGAVL 1kyhA 166 :KKRAEYAKEWAAQLQTVIVL T0375 226 :EGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAG 1kyhA 186 :KGNQTVIAFPDGDCWLNPTGNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHG T0375 285 :KKCGLQGF 1kyhA 252 :DEHSAHTL T0375 293 :DGIV 1kyhA 273 :KRFE Number of specific fragments extracted= 10 number of extra gaps= 0 total=5367 Number of alignments=437 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1kyhA 204 :TGNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=5368 Number of alignments=438 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 234 :DGKL 1kyhA 189 :QTVI T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKK 1kyhA 198 :DCWLNPTGNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGAC Number of specific fragments extracted= 2 number of extra gaps= 0 total=5370 Number of alignments=439 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Warning: unaligning (T0375)A230 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kyhA)T26 T0375 231 :LGPDGKLLHSDAFPPPRVVDTLGA 1kyhA 27 :YGTALLLAGSDDMPGAALLAGLGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=5371 Number of alignments=440 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=5371 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Warning: unaligning (T0375)Q3 because first residue in template chain is (1kyhA)N2 Warning: unaligning (T0375)D19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kyhA)T26 Warning: unaligning (T0375)A53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kyhA)T26 T0375 4 :ILCVGLVVLDVISLV 1kyhA 3 :VPFWTEEHVRATLPE T0375 54 :PCAFMGSMAPGHVA 1kyhA 27 :YGTALLLAGSDDMP T0375 80 :DLRYTVFQTTGSVPIATVIINE 1kyhA 41 :GAALLAGLGAMRSGLGKLVIGT T0375 103 :SGSRTILYYDRSLPDVSATDFE 1kyhA 63 :SENVIPLIVPVLPEATYWRDGW T0375 125 :KVDLTQFKWIHIEGRNASEQ 1kyhA 90 :AQLEETYRAIAIGPGLPQTE T0375 145 :VKMLQRIDAHNTRQPPEQ 1kyhA 112 :QQAVDHVLTADCPVILDA T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1kyhA 130 :GALAKRTYPKREGPVILTPHPGEFFRM T0375 198 :GF 1kyhA 158 :GV T0375 200 :QSAEEALRGLYGR 1kyhA 166 :KKRAEYAKEWAAQ T0375 216 :GAVLVCAWAEEGADAL 1kyhA 179 :LQTVIVLKGNQTVIAF T0375 233 :PDGK 1kyhA 195 :PDGD T0375 238 :LHSDAF 1kyhA 199 :CWLNPT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1kyhA 205 :GNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAEL T0375 290 :QGFDGI 1kyhA 254 :HSAHTL Number of specific fragments extracted= 14 number of extra gaps= 0 total=5385 Number of alignments=441 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Warning: unaligning (T0375)Q3 because first residue in template chain is (1kyhA)N2 Warning: unaligning (T0375)D19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kyhA)T26 Warning: unaligning (T0375)A53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kyhA)T26 T0375 4 :ILCVGLVVLDVISLV 1kyhA 3 :VPFWTEEHVRATLPE T0375 54 :P 1kyhA 27 :Y T0375 55 :CAFMGSMAPGHVADFVLDDLRR 1kyhA 29 :TALLLAGSDDMPGAALLAGLGA T0375 90 :GSVPIATVIIN 1kyhA 51 :MRSGLGKLVIG T0375 103 :SGSRTILYYDRSLPDVS 1kyhA 62 :TSENVIPLIVPVLPEAT T0375 120 :ATDFE 1kyhA 80 :WRDGW T0375 125 :KVDLTQFKWIHIEGRNASEQ 1kyhA 90 :AQLEETYRAIAIGPGLPQTE T0375 145 :VKMLQRIDAHNTRQPPEQK 1kyhA 112 :QQAVDHVLTADCPVILDAG T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHL 1kyhA 131 :ALAKRTYPKREGPVILTPHPGEFFRM T0375 198 :GF 1kyhA 158 :GV T0375 200 :QSAEEALRGLYGR 1kyhA 166 :KKRAEYAKEWAAQ T0375 216 :GAVLVCAWAEEGADAL 1kyhA 179 :LQTVIVLKGNQTVIAF T0375 233 :PDGKLLHSDA 1kyhA 195 :PDGDCWLNPT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1kyhA 205 :GNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAEL T0375 290 :QGF 1kyhA 254 :HSA Number of specific fragments extracted= 15 number of extra gaps= 0 total=5400 Number of alignments=442 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 1 :GSQ 1kyhA 2 :NVP T0375 39 :GNASNSCTILSLLGAPCAFMGSM 1kyhA 41 :GAALLAGLGAMRSGLGKLVIGTS T0375 63 :PGHVA 1kyhA 64 :ENVIP T0375 73 :DLR 1kyhA 69 :LIV T0375 88 :TTG 1kyhA 72 :PVL T0375 103 :SG 1kyhA 75 :PE T0375 108 :ILYYDR 1kyhA 77 :ATYWRD T0375 114 :SL 1kyhA 88 :AD T0375 125 :KVDLTQFKWIHIEGRNASEQ 1kyhA 90 :AQLEETYRAIAIGPGLPQTE T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEVEKP 1kyhA 112 :QQAVDHVLTADCPVILDAGALAKRTYPKR T0375 182 :GYGDVVFVSKDVAKHL 1kyhA 141 :EGPVILTPHPGEFFRM T0375 198 :GF 1kyhA 158 :GV T0375 200 :QSAEEALRGLYGRV 1kyhA 166 :KKRAEYAKEWAAQL T0375 216 :G 1kyhA 180 :Q T0375 218 :VLVC 1kyhA 181 :TVIV T0375 223 :WAEEGADALGPDGKLLHSDAF 1kyhA 185 :LKGNQTVIAFPDGDCWLNPTG T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1kyhA 206 :NGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAEL T0375 290 :QGFDGI 1kyhA 254 :HSAHTL Number of specific fragments extracted= 18 number of extra gaps= 0 total=5418 Number of alignments=443 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Warning: unaligning (T0375)E24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kyhA)T26 Warning: unaligning (T0375)A53 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kyhA)T26 T0375 1 :G 1kyhA 2 :N T0375 21 :YPK 1kyhA 15 :LPE T0375 54 :PCAFMGSMAPG 1kyhA 27 :YGTALLLAGSD T0375 65 :HVADFVLDDLRRYSVD 1kyhA 41 :GAALLAGLGAMRSGLG T0375 82 :RYTVFQTT 1kyhA 57 :KLVIGTSE T0375 101 :EA 1kyhA 65 :NV T0375 112 :DRSLPDVS 1kyhA 71 :VPVLPEAT T0375 120 :ATDFEKVD 1kyhA 81 :RDGWKKAA T0375 128 :LT 1kyhA 92 :LE T0375 130 :QFKWIHIEG 1kyhA 95 :TYRAIAIGP T0375 139 :RNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKP 1kyhA 106 :PQTESVQQAVDHVLTADCPVILDAGALAKRTYPKR T0375 182 :GYGDVVFVSKDVAKHL 1kyhA 141 :EGPVILTPHPGEFFRM T0375 198 :GF 1kyhA 158 :GV T0375 200 :QSAEEAL 1kyhA 166 :KKRAEYA T0375 207 :RGLYGRV 1kyhA 174 :EWAAQLQ T0375 216 :G 1kyhA 181 :T T0375 220 :VCAWAEEGADALGPDGKLLHSDAFP 1kyhA 182 :VIVLKGNQTVIAFPDGDCWLNPTGN T0375 249 :VDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1kyhA 209 :LAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAEL T0375 290 :QGFDGI 1kyhA 254 :HSAHTL Number of specific fragments extracted= 19 number of extra gaps= 0 total=5437 Number of alignments=444 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 124 :EKVDLTQFKWIHIEGRNASEQ 1kyhA 89 :DAQLEETYRAIAIGPGLPQTE T0375 145 :VKMLQRIDAHNTRQPPEQ 1kyhA 112 :QQAVDHVLTADCPVILDA T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1kyhA 130 :GALAKRTYPKREGPVILTPHPGEFFRM T0375 198 :GF 1kyhA 158 :GV T0375 200 :QSAEEALRGLYGR 1kyhA 166 :KKRAEYAKEWAAQ T0375 216 :GAVLVCAWAEEGADAL 1kyhA 179 :LQTVIVLKGNQTVIAF T0375 233 :PDGK 1kyhA 195 :PDGD T0375 238 :LHSDAF 1kyhA 199 :CWLNPT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQV 1kyhA 205 :GNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYL Number of specific fragments extracted= 9 number of extra gaps= 0 total=5446 Number of alignments=445 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 57 :FMGSMAPGHVADFVLDDLR 1kyhA 31 :LLLAGSDDMPGAALLAGLG T0375 89 :TGSVPIATVIIN 1kyhA 50 :AMRSGLGKLVIG T0375 103 :SGSRTILYYDRSLPDVS 1kyhA 62 :TSENVIPLIVPVLPEAT T0375 120 :ATDFE 1kyhA 80 :WRDGW T0375 125 :KVDLTQFKWIHIEGRNASEQ 1kyhA 90 :AQLEETYRAIAIGPGLPQTE T0375 145 :VKMLQRIDAHNTRQPPEQK 1kyhA 112 :QQAVDHVLTADCPVILDAG T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHL 1kyhA 131 :ALAKRTYPKREGPVILTPHPGEFFRM T0375 198 :GF 1kyhA 158 :GV T0375 200 :QSAEEALRGLYGR 1kyhA 166 :KKRAEYAKEWAAQ T0375 216 :GAVLVCAWAEEGADAL 1kyhA 179 :LQTVIVLKGNQTVIAF T0375 233 :PDGKLLHSDA 1kyhA 195 :PDGDCWLNPT T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQV 1kyhA 205 :GNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYL Number of specific fragments extracted= 12 number of extra gaps= 0 total=5458 Number of alignments=446 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 3 :QILCVGL 1kyhA 29 :TALLLAG T0375 18 :VDKYP 1kyhA 36 :SDDMP T0375 39 :GNASNSCTILSLLGAPCAFMGSM 1kyhA 41 :GAALLAGLGAMRSGLGKLVIGTS T0375 63 :PGHVA 1kyhA 64 :ENVIP T0375 73 :DLR 1kyhA 69 :LIV T0375 88 :TTG 1kyhA 72 :PVL T0375 103 :SG 1kyhA 75 :PE T0375 108 :ILYYDR 1kyhA 77 :ATYWRD T0375 114 :SL 1kyhA 88 :AD T0375 125 :KVDLTQFKWIHIEGRNASEQ 1kyhA 90 :AQLEETYRAIAIGPGLPQTE T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEVEKP 1kyhA 112 :QQAVDHVLTADCPVILDAGALAKRTYPKR T0375 182 :GYGDVVFVSKDVAKHL 1kyhA 141 :EGPVILTPHPGEFFRM T0375 198 :GF 1kyhA 158 :GV T0375 200 :QSAEEALRGLYGRV 1kyhA 166 :KKRAEYAKEWAAQL T0375 216 :G 1kyhA 180 :Q T0375 218 :VLVC 1kyhA 181 :TVIV T0375 223 :WAEEGADALGPDGKLLHSDAF 1kyhA 185 :LKGNQTVIAFPDGDCWLNPTG T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1kyhA 206 :NGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAEL Number of specific fragments extracted= 18 number of extra gaps= 0 total=5476 Number of alignments=447 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 2 :SQILCVG 1kyhA 28 :GTALLLA T0375 18 :VDKYP 1kyhA 36 :SDDMP T0375 39 :GNASNSCTILSLLGAPCAFMG 1kyhA 41 :GAALLAGLGAMRSGLGKLVIG T0375 61 :MAPG 1kyhA 62 :TSEN T0375 66 :VADFV 1kyhA 66 :VIPLI T0375 103 :SGS 1kyhA 75 :PEA T0375 109 :LYYDR 1kyhA 78 :TYWRD T0375 114 :SLPDVS 1kyhA 88 :ADAQLE T0375 129 :TQFKWIHIEG 1kyhA 94 :ETYRAIAIGP T0375 139 :RNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKP 1kyhA 106 :PQTESVQQAVDHVLTADCPVILDAGALAKRTYPKR T0375 182 :GYGDVVFVSKDVAKHL 1kyhA 141 :EGPVILTPHPGEFFRM T0375 198 :GF 1kyhA 158 :GV T0375 200 :QSAEEAL 1kyhA 166 :KKRAEYA T0375 207 :RGLYGRV 1kyhA 174 :EWAAQLQ T0375 216 :G 1kyhA 181 :T T0375 220 :VCAWAEEGADALGPDGKLLHSDAFP 1kyhA 182 :VIVLKGNQTVIAFPDGDCWLNPTGN T0375 249 :VDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1kyhA 209 :LAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAEL Number of specific fragments extracted= 17 number of extra gaps= 0 total=5493 Number of alignments=448 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Warning: unaligning (T0375)Q3 because first residue in template chain is (1kyhA)N2 Warning: unaligning (T0375)D19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kyhA)T26 Warning: unaligning (T0375)E27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kyhA)T26 T0375 4 :ILCVGLVVLDVISLV 1kyhA 3 :VPFWTEEHVRATLPE T0375 28 :I 1kyhA 27 :Y T0375 54 :PCAFMGSMAPGHVADFVLDDLRRY 1kyhA 28 :GTALLLAGSDDMPGAALLAGLGAM T0375 91 :SVPIATVIINEASG 1kyhA 52 :RSGLGKLVIGTSEN T0375 105 :SRTILYYDR 1kyhA 68 :PLIVPVLPE T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNA 1kyhA 79 :YWRDGWKKAADAQLEETYRAIAIGPGLP T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 1kyhA 109 :ESVQQAVDHVLTADCPVILDA T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1kyhA 130 :GALAKRTYPKREGPVILTPHPGEFFRM T0375 198 :GFQ 1kyhA 158 :GVP T0375 201 :SAEEALRGLYGRVRKGA 1kyhA 163 :ELQKKRAEYAKEWAAQL T0375 218 :VLVCAWAEEGADALGPD 1kyhA 181 :TVIVLKGNQTVIAFPDG T0375 236 :KLLHSDAF 1kyhA 198 :DCWLNPTG T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1kyhA 206 :NGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAEL T0375 290 :QGFDGIV 1kyhA 254 :HSAHTLL Number of specific fragments extracted= 14 number of extra gaps= 0 total=5507 Number of alignments=449 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Warning: unaligning (T0375)Q3 because first residue in template chain is (1kyhA)N2 Warning: unaligning (T0375)E24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kyhA)T26 Warning: unaligning (T0375)S32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kyhA)T26 T0375 4 :ILCVGLVVLDVISL 1kyhA 3 :VPFWTEEHVRATLP T0375 23 :K 1kyhA 17 :E T0375 53 :APCAFMGSMAPGHVADFVLDDLRRYS 1kyhA 27 :YGTALLLAGSDDMPGAALLAGLGAMR T0375 92 :VPIATVIINEASG 1kyhA 53 :SGLGKLVIGTSEN T0375 106 :RTILYYDRSLPDVSATDFE 1kyhA 68 :PLIVPVLPEATYWRDGWKK T0375 125 :KVDLTQFKWIHIEGRNA 1kyhA 90 :AQLEETYRAIAIGPGLP T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 1kyhA 109 :ESVQQAVDHVLTADCPVILDA T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1kyhA 130 :GALAKRTYPKREGPVILTPHPGEFFRM T0375 198 :GFQ 1kyhA 158 :GVP T0375 203 :EEALRGLYGRVR 1kyhA 166 :KKRAEYAKEWAA T0375 216 :GA 1kyhA 178 :QL T0375 218 :VLVCAWAEEGADAL 1kyhA 181 :TVIVLKGNQTVIAF T0375 233 :PDGKLLHSDAF 1kyhA 195 :PDGDCWLNPTG T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1kyhA 206 :NGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAEL T0375 290 :QGFDGIV 1kyhA 254 :HSAHTLL Number of specific fragments extracted= 15 number of extra gaps= 0 total=5522 Number of alignments=450 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Warning: unaligning (T0375)E24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kyhA)T26 T0375 23 :K 1kyhA 17 :E T0375 38 :GGNASNSCTILSLLGAPCAFMGSMAP 1kyhA 40 :PGAALLAGLGAMRSGLGKLVIGTSEN T0375 65 :H 1kyhA 66 :V T0375 71 :LDDL 1kyhA 67 :IPLI T0375 112 :DRSLPDVS 1kyhA 71 :VPVLPEAT T0375 120 :ATDFEKVDLTQFKWIHIEGRNA 1kyhA 85 :KKAADAQLEETYRAIAIGPGLP T0375 142 :SEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKP 1kyhA 109 :ESVQQAVDHVLTADCPVILDAGALAKRTYPKR T0375 182 :GYGDVVFVSKDVAKHL 1kyhA 141 :EGPVILTPHPGEFFRM T0375 198 :GFQ 1kyhA 158 :GVP T0375 201 :S 1kyhA 167 :K T0375 205 :ALRGLYGRVRK 1kyhA 168 :RAEYAKEWAAQ T0375 216 :GA 1kyhA 180 :QT T0375 220 :VCAWAEEGADALGPDGKLLHSDAF 1kyhA 182 :VIVLKGNQTVIAFPDGDCWLNPTG T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1kyhA 206 :NGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAEL T0375 290 :QGFDGIV 1kyhA 254 :HSAHTLL Number of specific fragments extracted= 15 number of extra gaps= 0 total=5537 Number of alignments=451 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 3 :QILCVG 1kyhA 29 :TALLLA T0375 18 :VDKYP 1kyhA 36 :SDDMP T0375 39 :GNASNSCTILSLLGAPCAFMGS 1kyhA 41 :GAALLAGLGAMRSGLGKLVIGT T0375 101 :EAS 1kyhA 63 :SEN T0375 112 :DRSLPDVS 1kyhA 71 :VPVLPEAT T0375 120 :ATDFEKVD 1kyhA 81 :RDGWKKAA T0375 128 :LT 1kyhA 92 :LE T0375 130 :QFKWIHIEGRNA 1kyhA 95 :TYRAIAIGPGLP T0375 142 :SEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKP 1kyhA 109 :ESVQQAVDHVLTADCPVILDAGALAKRTYPKR T0375 182 :GYGDVVFVSKDVAKHL 1kyhA 141 :EGPVILTPHPGEFFRM T0375 198 :GFQ 1kyhA 158 :GVP T0375 202 :AEEALRGLYGR 1kyhA 169 :AEYAKEWAAQL T0375 216 :GAVLVCA 1kyhA 180 :QTVIVLK T0375 225 :EEGADALGPDGKLLHSDAF 1kyhA 187 :GNQTVIAFPDGDCWLNPTG T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1kyhA 206 :NGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAEL T0375 290 :QGFDGIV 1kyhA 254 :HSAHTLL Number of specific fragments extracted= 16 number of extra gaps= 0 total=5553 Number of alignments=452 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 124 :EKVDLTQFKWIHIEGRNA 1kyhA 89 :DAQLEETYRAIAIGPGLP T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 1kyhA 109 :ESVQQAVDHVLTADCPVILDA T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1kyhA 130 :GALAKRTYPKREGPVILTPHPGEFFRM T0375 198 :GFQ 1kyhA 158 :GVP T0375 201 :SAEEALRGLYGRVRKGA 1kyhA 163 :ELQKKRAEYAKEWAAQL T0375 218 :VLVCAWAEEGADALGPD 1kyhA 181 :TVIVLKGNQTVIAFPDG T0375 236 :KLLHSDAF 1kyhA 198 :DCWLNPTG T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 1kyhA 206 :NGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAE Number of specific fragments extracted= 8 number of extra gaps= 0 total=5561 Number of alignments=453 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 56 :AFMGSMAPGHVADFVLDDLRRYS 1kyhA 30 :ALLLAGSDDMPGAALLAGLGAMR T0375 92 :VPIATVIINEASG 1kyhA 53 :SGLGKLVIGTSEN T0375 106 :RTILYYDRSLPDVSATDFE 1kyhA 68 :PLIVPVLPEATYWRDGWKK T0375 125 :KVDLTQFKWIHIEGRNA 1kyhA 90 :AQLEETYRAIAIGPGLP T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 1kyhA 109 :ESVQQAVDHVLTADCPVILDA T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1kyhA 130 :GALAKRTYPKREGPVILTPHPGEFFRM T0375 198 :GFQ 1kyhA 158 :GVP T0375 203 :EEALRGLYGRVR 1kyhA 166 :KKRAEYAKEWAA T0375 216 :GA 1kyhA 178 :QL T0375 218 :VLVCAWAEEGADAL 1kyhA 181 :TVIVLKGNQTVIAF T0375 233 :PDGKLLHSDAF 1kyhA 195 :PDGDCWLNPTG T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKC 1kyhA 206 :NGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACA Number of specific fragments extracted= 12 number of extra gaps= 0 total=5573 Number of alignments=454 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 3 :QILCVGL 1kyhA 29 :TALLLAG T0375 18 :VDKYP 1kyhA 36 :SDDMP T0375 39 :GNASNSCTILSLLGAPCAFMGSMAP 1kyhA 41 :GAALLAGLGAMRSGLGKLVIGTSEN T0375 65 :H 1kyhA 66 :V T0375 71 :LDDL 1kyhA 67 :IPLI T0375 112 :DRSLPDVS 1kyhA 71 :VPVLPEAT T0375 120 :ATDFEKVDLTQFKWIHIEGRNA 1kyhA 85 :KKAADAQLEETYRAIAIGPGLP T0375 142 :SEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKP 1kyhA 109 :ESVQQAVDHVLTADCPVILDAGALAKRTYPKR T0375 182 :GYGDVVFVSKDVAKHL 1kyhA 141 :EGPVILTPHPGEFFRM T0375 198 :GFQ 1kyhA 158 :GVP T0375 201 :S 1kyhA 167 :K T0375 205 :ALRGLYGRVRK 1kyhA 168 :RAEYAKEWAAQ T0375 216 :GA 1kyhA 180 :QT T0375 220 :VCAWAEEGADALGPDGKLLHSDAF 1kyhA 182 :VIVLKGNQTVIAFPDGDCWLNPTG T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1kyhA 206 :NGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAEL Number of specific fragments extracted= 15 number of extra gaps= 0 total=5588 Number of alignments=455 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 2 :SQILCVG 1kyhA 28 :GTALLLA T0375 18 :VDKYP 1kyhA 36 :SDDMP T0375 39 :GNASNSCTILSLLGAPCAFMGS 1kyhA 41 :GAALLAGLGAMRSGLGKLVIGT T0375 101 :EAS 1kyhA 63 :SEN T0375 112 :DRSLPDVS 1kyhA 71 :VPVLPEAT T0375 120 :ATDFEKVD 1kyhA 81 :RDGWKKAA T0375 128 :LT 1kyhA 92 :LE T0375 130 :QFKWIHIEGRNA 1kyhA 95 :TYRAIAIGPGLP T0375 142 :SEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKP 1kyhA 109 :ESVQQAVDHVLTADCPVILDAGALAKRTYPKR T0375 182 :GYGDVVFVSKDVAKHL 1kyhA 141 :EGPVILTPHPGEFFRM T0375 198 :GFQ 1kyhA 158 :GVP T0375 202 :AEEALRGLYGR 1kyhA 169 :AEYAKEWAAQL T0375 216 :GAVLVCA 1kyhA 180 :QTVIVLK T0375 225 :EEGADALGPDGKLLHSDAF 1kyhA 187 :GNQTVIAFPDGDCWLNPTG T0375 246 :PRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1kyhA 206 :NGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAEL T0375 290 :QGFDGIV 1kyhA 254 :HSAHTLL Number of specific fragments extracted= 16 number of extra gaps= 0 total=5604 Number of alignments=456 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Warning: unaligning (T0375)D13 because first residue in template chain is (1kyhA)N2 Warning: unaligning (T0375)R29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kyhA)T26 Warning: unaligning (T0375)R37 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kyhA)T26 T0375 14 :VISLVDKYPKEDSEI 1kyhA 3 :VPFWTEEHVRATLPE T0375 38 :GG 1kyhA 27 :YG T0375 55 :CAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSAT 1kyhA 29 :TALLLAGSDDMPGAALLAGLGAMRSGLGKLVIGTSENVIPLIVPVLPEATYWRDGWKKAADAQLEET T0375 131 :FKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVS 1kyhA 96 :YRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGAL T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1kyhA 133 :AKRTYPKREGPVILTPHPGEFFRMTGV T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1kyhA 164 :LQKKRAEYAKEWAAQLQTVIVLKGNQTVIAFPDGD T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1kyhA 199 :CWLNPTGNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAELWTDEHSA Number of specific fragments extracted= 7 number of extra gaps= 0 total=5611 Number of alignments=457 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Warning: unaligning (T0375)Q3 because first residue in template chain is (1kyhA)N2 Warning: unaligning (T0375)E24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kyhA)T26 Warning: unaligning (T0375)S32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kyhA)T26 T0375 4 :ILC 1kyhA 3 :VPF T0375 17 :LVDK 1kyhA 6 :WTEE T0375 21 :YPK 1kyhA 15 :LPE T0375 53 :APCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASG 1kyhA 27 :YGTALLLAGSDDMPGAALLAGLGAMRSGLGKLVIGTSENVIPLIVPVLPEAT T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASE 1kyhA 79 :YWRDGWKKAADAQLEETYRAIAIGPGLPQT T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1kyhA 109 :ESVQQAVDHVLTADCPVILDAGALAKRTYPKREGPVILTPHPGEFFRMTGV T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKL 1kyhA 165 :QKKRAEYAKEWAAQLQTVIVLKGNQTVIAFPDGDCW T0375 241 :DAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1kyhA 201 :LNPTGNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAELWTDE Number of specific fragments extracted= 8 number of extra gaps= 0 total=5619 Number of alignments=458 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Warning: unaligning (T0375)L17 because first residue in template chain is (1kyhA)N2 Warning: unaligning (T0375)E24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kyhA)T26 Warning: unaligning (T0375)S32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kyhA)T26 T0375 18 :VDK 1kyhA 3 :VPF T0375 21 :YPK 1kyhA 15 :LPE T0375 33 :QRWQ 1kyhA 27 :YGTA T0375 37 :RGGNASNSCTILSLLGAPCAFMGSMAPGH 1kyhA 39 :MPGAALLAGLGAMRSGLGKLVIGTSENVI T0375 72 :DDL 1kyhA 68 :PLI T0375 84 :TVFQTT 1kyhA 71 :VPVLPE T0375 107 :TILYYDR 1kyhA 77 :ATYWRDG T0375 114 :SLPDVS 1kyhA 87 :AADAQL T0375 128 :LTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVE 1kyhA 93 :EETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRT T0375 179 :QLFGYGDVVFVSKDVAKHLGFQ 1kyhA 138 :PKREGPVILTPHPGEFFRMTGV T0375 201 :SAEEALRGLYGRVRK 1kyhA 166 :KKRAEYAKEWAAQLQ T0375 218 :VLVCAWAEEGADALGPDG 1kyhA 181 :TVIVLKGNQTVIAFPDGD T0375 237 :LLHSDAFP 1kyhA 199 :CWLNPTGN T0375 250 :DTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1kyhA 210 :AKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAELWTDEHSA Number of specific fragments extracted= 14 number of extra gaps= 0 total=5633 Number of alignments=459 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set Warning: unaligning (T0375)L17 because first residue in template chain is (1kyhA)N2 Warning: unaligning (T0375)E24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kyhA)T26 Warning: unaligning (T0375)S32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kyhA)T26 T0375 18 :VDK 1kyhA 3 :VPF T0375 21 :YPK 1kyhA 15 :LPE T0375 33 :QRWQ 1kyhA 27 :YGTA T0375 37 :RGGNASNSCTILSLLGAPCAFMGSMAP 1kyhA 39 :MPGAALLAGLGAMRSGLGKLVIGTSEN T0375 66 :VADFV 1kyhA 66 :VIPLI T0375 87 :QTT 1kyhA 74 :LPE T0375 108 :ILYYDRSLPDVSATDFE 1kyhA 77 :ATYWRDGWKKAADAQLE T0375 129 :TQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVE 1kyhA 94 :ETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRT T0375 182 :GYGDVVFVSKDVAKHLGFQSAEE 1kyhA 141 :EGPVILTPHPGEFFRMTGVPVNE T0375 205 :ALRGLYGRVRKG 1kyhA 170 :EYAKEWAAQLQT T0375 220 :VCAWAEEGADALGPDGKLLHSDAFP 1kyhA 182 :VIVLKGNQTVIAFPDGDCWLNPTGN T0375 251 :TLGAGDTFNASVIFSLSQGRSVQEALRFGC 1kyhA 211 :KGGTGDTLTGMILGMLCCHEDPKHAVLNAV T0375 281 :QVAGKKCGLQGFDGIV 1kyhA 245 :ACAELWTDEHSAHTLL Number of specific fragments extracted= 13 number of extra gaps= 0 total=5646 Number of alignments=460 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 124 :EKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVS 1kyhA 89 :DAQLEETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGAL T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1kyhA 133 :AKRTYPKREGPVILTPHPGEFFRMTGV T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1kyhA 164 :LQKKRAEYAKEWAAQLQTVIVLKGNQTVIAFPDGD T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQV 1kyhA 199 :CWLNPTGNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYL Number of specific fragments extracted= 4 number of extra gaps= 0 total=5650 Number of alignments=461 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASE 1kyhA 79 :YWRDGWKKAADAQLEETYRAIAIGPGLPQT T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1kyhA 109 :ESVQQAVDHVLTADCPVILDAGALAKRTYPKREGPVILTPHPGEFFRMTGV T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKL 1kyhA 165 :QKKRAEYAKEWAAQLQTVIVLKGNQTVIAFPDGDCW T0375 241 :DAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQ 1kyhA 201 :LNPTGNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVY Number of specific fragments extracted= 4 number of extra gaps= 0 total=5654 Number of alignments=462 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 4 :ILCVGL 1kyhA 31 :LLLAGS T0375 19 :DK 1kyhA 37 :DD T0375 37 :RGGNASNSCTILSLLGAPCAFMGSMAPGH 1kyhA 39 :MPGAALLAGLGAMRSGLGKLVIGTSENVI T0375 72 :DDL 1kyhA 68 :PLI T0375 84 :TVFQTT 1kyhA 71 :VPVLPE T0375 107 :TILYYDR 1kyhA 77 :ATYWRDG T0375 114 :SLPDVS 1kyhA 87 :AADAQL T0375 128 :LTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVE 1kyhA 93 :EETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRT T0375 179 :QLFGYGDVVFVSKDVAKHLGFQ 1kyhA 138 :PKREGPVILTPHPGEFFRMTGV T0375 201 :SAEEALRGLYGRVRK 1kyhA 166 :KKRAEYAKEWAAQLQ T0375 218 :VLVCAWAEEGADALGPDG 1kyhA 181 :TVIVLKGNQTVIAFPDGD T0375 237 :LLHSDAFP 1kyhA 199 :CWLNPTGN T0375 250 :DTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 1kyhA 210 :AKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAE Number of specific fragments extracted= 13 number of extra gaps= 0 total=5667 Number of alignments=463 # 1kyhA read from 1kyhA/merged-a2m # found chain 1kyhA in training set T0375 2 :SQILCVGL 1kyhA 28 :GTALLLAG T0375 18 :VDK 1kyhA 36 :SDD T0375 37 :RGGNASNSCTILSLLGAPCAFMGSMAP 1kyhA 39 :MPGAALLAGLGAMRSGLGKLVIGTSEN T0375 66 :VADFV 1kyhA 66 :VIPLI T0375 87 :QTT 1kyhA 74 :LPE T0375 108 :ILYYDRSLPDVSATDFE 1kyhA 77 :ATYWRDGWKKAADAQLE T0375 129 :TQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVE 1kyhA 94 :ETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRT T0375 182 :GYGDVVFVSKDVAKHLGFQSAEE 1kyhA 141 :EGPVILTPHPGEFFRMTGVPVNE T0375 205 :ALRGLYGRVRKG 1kyhA 170 :EYAKEWAAQLQT T0375 220 :VCAWAEEGADALGPDGKLLHSDAFP 1kyhA 182 :VIVLKGNQTVIAFPDGDCWLNPTGN T0375 251 :TLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCG 1kyhA 211 :KGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAE Number of specific fragments extracted= 11 number of extra gaps= 0 total=5678 Number of alignments=464 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vi9A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0375 read from 1vi9A/merged-a2m # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)A95 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)T96 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)I98 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)I99 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)I108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)Y110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 44 :SCTILSLLG 1vi9A 2 :MKNILAIQS T0375 55 :CAFMGSMAPG 1vi9A 11 :HVVYGHAGNS T0375 66 :VADFVLDDLRRYSVDL 1vi9A 21 :AAEFPMRRLGANVWPL T0375 93 :PI 1vi9A 37 :NT T0375 97 :V 1vi9A 41 :F T0375 100 :NEASGSRT 1vi9A 44 :HTQYGKWT T0375 111 :YDRSLPDVSATDFEKVDL 1vi9A 55 :MPPSHLTEIVQGIAAIDK T0375 129 :TQFKWIHI 1vi9A 74 :HTCDAVLS T0375 138 :GRNASEQVK 1vi9A 82 :GYLGSAEQG T0375 150 :RIDAHNTRQPP 1vi9A 91 :EHILGIVRQVK T0375 161 :EQKIRVSVE 1vi9A 104 :NPQAKYFCD T0375 170 :VEKPREELFQ 1vi9A 125 :APGVAEFHVR T0375 180 :LFGYGDVVFVS 1vi9A 136 :GLPASDIIAPN T0375 191 :KDVAKHLG 1vi9A 148 :VELEILCE T0375 199 :FQSAEEALRGLYGRV 1vi9A 161 :VEEAVLAARELIAQG T0375 216 :GAVLVCA 1vi9A 176 :PQIVLVK T0375 223 :WAEEGA 1vi9A 187 :AGYSRD T0375 229 :DALGPDGKLLHSDAFPPP 1vi9A 196 :MLLVTADEAWHISRPLVD T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 1vi9A 215 :GMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTK Number of specific fragments extracted= 19 number of extra gaps= 2 total=5697 Number of alignments=465 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)A95 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)T96 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)I98 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)I99 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)I108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)Y110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 44 :SCTILSLLG 1vi9A 2 :MKNILAIQS T0375 55 :CAFMGSMAPG 1vi9A 11 :HVVYGHAGNS T0375 66 :VADFVLDDLRRYSVDL 1vi9A 21 :AAEFPMRRLGANVWPL T0375 93 :PI 1vi9A 37 :NT T0375 97 :V 1vi9A 41 :F T0375 100 :NEASGSRT 1vi9A 44 :HTQYGKWT T0375 111 :YDRSLPDVSATDFEKVDL 1vi9A 55 :MPPSHLTEIVQGIAAIDK T0375 129 :TQFKWIHI 1vi9A 74 :HTCDAVLS T0375 138 :GRNAS 1vi9A 82 :GYLGS T0375 143 :EQVKMLQRIDAHNTRQ 1vi9A 88 :EQGEHILGIVRQVKAA T0375 161 :EQKIRVSVE 1vi9A 104 :NPQAKYFCD T0375 170 :VEKPREELFQ 1vi9A 125 :APGVAEFHVR T0375 180 :LFGYGDVVFVSK 1vi9A 136 :GLPASDIIAPNL T0375 192 :DVAKHLG 1vi9A 149 :ELEILCE T0375 199 :FQSAEEALRGLYGRV 1vi9A 161 :VEEAVLAARELIAQG T0375 216 :GAVLVCA 1vi9A 176 :PQIVLVK T0375 223 :WAEEGA 1vi9A 187 :AGYSRD T0375 229 :DALGPDGKLLHSDAFPPP 1vi9A 196 :MLLVTADEAWHISRPLVD T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGF 1vi9A 215 :GMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKA Number of specific fragments extracted= 19 number of extra gaps= 2 total=5716 Number of alignments=466 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)A95 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)T96 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)I98 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)I99 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)I108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)Y110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 45 :CTILSLLG 1vi9A 3 :KNILAIQS T0375 55 :CAFMGSMAPG 1vi9A 11 :HVVYGHAGNS T0375 66 :VADFVLDDLRRYSVDL 1vi9A 21 :AAEFPMRRLGANVWPL T0375 93 :PI 1vi9A 37 :NT T0375 97 :V 1vi9A 41 :F T0375 100 :NEASGSRT 1vi9A 44 :HTQYGKWT T0375 111 :YDRSLPDVSATDFEKVDL 1vi9A 55 :MPPSHLTEIVQGIAAIDK T0375 129 :TQFKWIHI 1vi9A 74 :HTCDAVLS T0375 138 :GRNASEQVK 1vi9A 82 :GYLGSAEQG T0375 150 :RIDAHNTRQPP 1vi9A 91 :EHILGIVRQVK T0375 161 :EQKIRVSVE 1vi9A 104 :NPQAKYFCD T0375 170 :VEKPREELFQ 1vi9A 125 :APGVAEFHVR T0375 180 :LFGYGDVVFVS 1vi9A 136 :GLPASDIIAPN T0375 191 :KDVAKHLG 1vi9A 148 :VELEILCE T0375 199 :FQSAEEALRGLYGRV 1vi9A 161 :VEEAVLAARELIAQG T0375 216 :GAVLVCA 1vi9A 176 :PQIVLVK T0375 223 :WAEEGA 1vi9A 187 :AGYSRD T0375 229 :DALGPDGKLLHSDAFPPP 1vi9A 196 :MLLVTADEAWHISRPLVD T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 1vi9A 215 :GMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTK Number of specific fragments extracted= 19 number of extra gaps= 2 total=5735 Number of alignments=467 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)A95 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)T96 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)I98 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)I99 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)I108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)Y110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 45 :CTILSLLG 1vi9A 3 :KNILAIQS T0375 55 :CAFMGSMAPG 1vi9A 11 :HVVYGHAGNS T0375 66 :VADFVLDDLRRYSVDL 1vi9A 21 :AAEFPMRRLGANVWPL T0375 93 :PI 1vi9A 37 :NT T0375 97 :V 1vi9A 41 :F T0375 100 :NEASGSRT 1vi9A 44 :HTQYGKWT T0375 111 :YDRSLPDVSATDFEKVDL 1vi9A 55 :MPPSHLTEIVQGIAAIDK T0375 129 :TQFKWIHI 1vi9A 74 :HTCDAVLS T0375 138 :GRNAS 1vi9A 82 :GYLGS T0375 143 :EQVKMLQRIDAHNTRQ 1vi9A 88 :EQGEHILGIVRQVKAA T0375 161 :EQKIRVSVE 1vi9A 104 :NPQAKYFCD T0375 170 :VEKPREELFQ 1vi9A 125 :APGVAEFHVR T0375 180 :LFGYGDVVFVSK 1vi9A 136 :GLPASDIIAPNL T0375 192 :DVAKHLG 1vi9A 149 :ELEILCE T0375 199 :FQSAEEALRGLYGRV 1vi9A 161 :VEEAVLAARELIAQG T0375 216 :GAVLVCA 1vi9A 176 :PQIVLVK T0375 223 :WAEEGA 1vi9A 187 :AGYSRD T0375 229 :DALGPDGKLLHSDAFPPP 1vi9A 196 :MLLVTADEAWHISRPLVD T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 1vi9A 215 :GMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTK Number of specific fragments extracted= 19 number of extra gaps= 2 total=5754 Number of alignments=468 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)A95 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)T96 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)I98 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)I99 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 7 :VGLV 1vi9A 2 :MKNI T0375 29 :RCLSQRWQRGGNASNSC 1vi9A 6 :LAIQSHVVYGHAGNSAA T0375 46 :TILSLLGAPCAFM 1vi9A 24 :FPMRRLGANVWPL T0375 93 :PI 1vi9A 37 :NT T0375 97 :V 1vi9A 41 :F T0375 100 :N 1vi9A 44 :H T0375 101 :EASGSR 1vi9A 46 :QYGKWT T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHI 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHTCDAVLS T0375 138 :GRNASEQ 1vi9A 82 :GYLGSAE T0375 148 :LQRIDAHNTRQPP 1vi9A 89 :QGEHILGIVRQVK T0375 161 :EQKIRVSVE 1vi9A 104 :NPQAKYFCD T0375 170 :VEKPR 1vi9A 116 :GHPEK T0375 175 :EELFQ 1vi9A 130 :EFHVR T0375 180 :LFGYGDVVFVS 1vi9A 136 :GLPASDIIAPN T0375 191 :KDVAKHLG 1vi9A 148 :VELEILCE T0375 199 :FQSAEEALRGLYG 1vi9A 161 :VEEAVLAARELIA T0375 214 :RKGAVLVCAWAEEGA 1vi9A 174 :QGPQIVLVKHLARAG T0375 229 :DALGPDGKLLHSDAFPPP 1vi9A 196 :MLLVTADEAWHISRPLVD T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1vi9A 215 :GMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQEY Number of specific fragments extracted= 19 number of extra gaps= 2 total=5773 Number of alignments=469 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)A95 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)T96 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)I98 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)I99 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 7 :VGLV 1vi9A 2 :MKNI T0375 36 :QRGGNASNSC 1vi9A 13 :VYGHAGNSAA T0375 46 :TILSLLGAPCAFM 1vi9A 24 :FPMRRLGANVWPL T0375 93 :PI 1vi9A 37 :NT T0375 97 :V 1vi9A 41 :F T0375 100 :N 1vi9A 44 :H T0375 101 :EASGSR 1vi9A 46 :QYGKWT T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHI 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHTCDAVLS T0375 138 :GRNASE 1vi9A 82 :GYLGSA T0375 144 :QVKMLQRIDAHNTRQ 1vi9A 89 :QGEHILGIVRQVKAA T0375 161 :EQKIRVSVE 1vi9A 104 :NPQAKYFCD T0375 170 :VEKPR 1vi9A 116 :GHPEK T0375 175 :EELFQ 1vi9A 130 :EFHVR T0375 180 :LFGYGDVVFVSKD 1vi9A 136 :GLPASDIIAPNLV T0375 193 :VAKHLG 1vi9A 150 :LEILCE T0375 199 :FQSAEEALRGLYG 1vi9A 161 :VEEAVLAARELIA T0375 214 :RKGAVLVCAWAEEGA 1vi9A 174 :QGPQIVLVKHLARAG T0375 229 :DALGPDGKLLHSDAFPPP 1vi9A 196 :MLLVTADEAWHISRPLVD T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1vi9A 215 :GMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQEY Number of specific fragments extracted= 19 number of extra gaps= 2 total=5792 Number of alignments=470 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)A95 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)T96 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)I98 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)I99 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 55 :CAFMGSMAPGHVA 1vi9A 6 :LAIQSHVVYGHAG T0375 68 :DFVLDDLRRYSVDLRYT 1vi9A 20 :SAAEFPMRRLGANVWPL T0375 93 :PI 1vi9A 37 :NT T0375 97 :V 1vi9A 41 :F T0375 100 :N 1vi9A 44 :H T0375 101 :EASGSR 1vi9A 46 :QYGKWT T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHI 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHTCDAVLS T0375 138 :GRNASEQ 1vi9A 82 :GYLGSAE T0375 148 :LQRIDAHNTRQPP 1vi9A 89 :QGEHILGIVRQVK T0375 161 :EQKIRVSVE 1vi9A 104 :NPQAKYFCD T0375 170 :VEKPR 1vi9A 116 :GHPEK T0375 175 :EELFQ 1vi9A 130 :EFHVR T0375 180 :LFGYGDVVFVS 1vi9A 136 :GLPASDIIAPN T0375 191 :KDVAKHLG 1vi9A 148 :VELEILCE T0375 199 :FQSAEEALRGLYG 1vi9A 161 :VEEAVLAARELIA T0375 214 :RKGAVLVCAWAEEGA 1vi9A 174 :QGPQIVLVKHLARAG T0375 229 :DALGPDGKLLHSDAFPPP 1vi9A 196 :MLLVTADEAWHISRPLVD T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 1vi9A 215 :GMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTK Number of specific fragments extracted= 18 number of extra gaps= 2 total=5810 Number of alignments=471 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)A95 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)T96 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)I98 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)I99 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 55 :CAFMGSMAPGHVA 1vi9A 6 :LAIQSHVVYGHAG T0375 68 :DFVLDDLRRYSVDLRYT 1vi9A 20 :SAAEFPMRRLGANVWPL T0375 93 :PI 1vi9A 37 :NT T0375 97 :V 1vi9A 41 :F T0375 100 :N 1vi9A 44 :H T0375 101 :EASGSR 1vi9A 46 :QYGKWT T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHI 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHTCDAVLS T0375 138 :GRNASE 1vi9A 82 :GYLGSA T0375 144 :QVKMLQRIDAHNTRQ 1vi9A 89 :QGEHILGIVRQVKAA T0375 161 :EQKIRVSVE 1vi9A 104 :NPQAKYFCD T0375 170 :VEKPR 1vi9A 116 :GHPEK T0375 175 :EELFQ 1vi9A 130 :EFHVR T0375 180 :LFGYGDVVFVSKD 1vi9A 136 :GLPASDIIAPNLV T0375 193 :VAKHLG 1vi9A 150 :LEILCE T0375 199 :FQSAEEALRGLYG 1vi9A 161 :VEEAVLAARELIA T0375 214 :RKGAVLVCAWAEEGA 1vi9A 174 :QGPQIVLVKHLARAG T0375 229 :DALGPDGKLLHSDAFPPP 1vi9A 196 :MLLVTADEAWHISRPLVD T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQG 1vi9A 215 :GMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTK Number of specific fragments extracted= 18 number of extra gaps= 2 total=5828 Number of alignments=472 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)L17 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V18 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)K20 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)Y21 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)R29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)L31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 1 :GSQILCVGLVVLDVIS 1vi9A 23 :EFPMRRLGANVWPLNT T0375 19 :D 1vi9A 41 :F T0375 22 :PK 1vi9A 44 :HT T0375 24 :EDSEI 1vi9A 47 :YGKWT T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRY 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQ T0375 180 :LFGYGDVVFVSKDV 1vi9A 107 :AKYFCDPVMGHPEK T0375 194 :AKHLGFQSAEEALRGLYGRVRKGAVLVCAWA 1vi9A 156 :HAVNNVEEAVLAARELIAQGPQIVLVKHLAR T0375 225 :EEGADALGPDGKLLHSDAFPPPR 1vi9A 191 :RDRFEMLLVTADEAWHISRPLVD T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVA 1vi9A 216 :MRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAV T0375 284 :GKKCGLQGFDGIV 1vi9A 258 :TKAMQEYELQVVA Number of specific fragments extracted= 10 number of extra gaps= 2 total=5838 Number of alignments=473 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)L17 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V18 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)K20 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)Y21 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)R29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)L31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 1 :GSQILCV 1vi9A 2 :MKNILAI T0375 8 :GLVVLDVIS 1vi9A 30 :GANVWPLNT T0375 19 :D 1vi9A 41 :F T0375 22 :PKED 1vi9A 44 :HTQY T0375 26 :SEI 1vi9A 49 :KWT T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDL 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAAN T0375 170 :VEKPREELFQ 1vi9A 125 :APGVAEFHVR T0375 180 :LFGYGDVV 1vi9A 136 :GLPASDII T0375 195 :KHLGFQSAEEALRGLYGRV 1vi9A 157 :AVNNVEEAVLAARELIAQG T0375 215 :KGAVLVCAWAE 1vi9A 176 :PQIVLVKHLAR T0375 226 :EGADALGPDG 1vi9A 194 :FEMLLVTADE T0375 237 :LLHSDAFPPP 1vi9A 204 :AWHISRPLVD T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVA 1vi9A 215 :GMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAV T0375 284 :GKKCGLQ 1vi9A 258 :TKAMQEY T0375 291 :GFDGIV 1vi9A 283 :SATKLE Number of specific fragments extracted= 15 number of extra gaps= 2 total=5853 Number of alignments=474 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set T0375 229 :DALGPDGKLLHSDAFPPP 1vi9A 196 :MLLVTADEAWHISRPLVD T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVA 1vi9A 215 :GMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAV Number of specific fragments extracted= 2 number of extra gaps= 0 total=5855 Number of alignments=475 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set T0375 176 :ELFQLFGY 1vi9A 149 :ELEILCEH T0375 195 :KHLGFQSAEEALRGLYGRV 1vi9A 157 :AVNNVEEAVLAARELIAQG T0375 215 :KGAVLVCAWAE 1vi9A 176 :PQIVLVKHLAR T0375 226 :EGADALGPDG 1vi9A 194 :FEMLLVTADE T0375 237 :LLHSDAFPPP 1vi9A 204 :AWHISRPLVD T0375 247 :RVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVA 1vi9A 215 :GMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAV Number of specific fragments extracted= 6 number of extra gaps= 0 total=5861 Number of alignments=476 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set T0375 252 :LGAGDTFNASVIFSLSQGRSVQEALR 1vi9A 220 :VGVGDVTSGLLLVKLLQGATLQEALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5862 Number of alignments=477 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set T0375 249 :VDTLGAGDTFNASVIFSLSQGRSVQEALR 1vi9A 217 :RQPVGVGDVTSGLLLVKLLQGATLQEALE Number of specific fragments extracted= 1 number of extra gaps= 0 total=5863 Number of alignments=478 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T46 because first residue in template chain is (1vi9A)L1 Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)V97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 47 :ILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRY 1vi9A 2 :MKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNT T0375 86 :F 1vi9A 41 :F T0375 89 :TGSVPIAT 1vi9A 44 :HTQYGKWT T0375 100 :NE 1vi9A 55 :MP T0375 112 :DRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1vi9A 57 :PSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQ T0375 145 :VKMLQRIDAHN 1vi9A 94 :LGIVRQVKAAN T0375 156 :TRQPPEQ 1vi9A 107 :AKYFCDP T0375 163 :KIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1vi9A 119 :EKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEIL T0375 198 :GF 1vi9A 155 :EH T0375 200 :QSAEEALRGLYGRV 1vi9A 162 :EEAVLAARELIAQG T0375 216 :GAVLVCAWAE 1vi9A 176 :PQIVLVKHLA T0375 226 :EGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1vi9A 194 :FEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAM T0375 294 :GI 1vi9A 263 :EY Number of specific fragments extracted= 13 number of extra gaps= 2 total=5876 Number of alignments=479 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)V97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 2 :SQI 1vi9A 3 :KNI T0375 51 :LGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRY 1vi9A 6 :LAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNT T0375 86 :F 1vi9A 41 :F T0375 89 :TGSVPIAT 1vi9A 44 :HTQYGKWT T0375 100 :NE 1vi9A 55 :MP T0375 112 :DRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1vi9A 57 :PSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQ T0375 145 :VKMLQRIDAHN 1vi9A 94 :LGIVRQVKAAN T0375 156 :TRQPPEQ 1vi9A 107 :AKYFCDP T0375 163 :KIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1vi9A 119 :EKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEIL T0375 198 :GF 1vi9A 155 :EH T0375 200 :QSAEEALRGLYGRV 1vi9A 162 :EEAVLAARELIAQG T0375 216 :GAVLVCAWAE 1vi9A 176 :PQIVLVKHLA T0375 226 :EGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFD 1vi9A 194 :FEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAM T0375 294 :GI 1vi9A 263 :EY Number of specific fragments extracted= 14 number of extra gaps= 2 total=5890 Number of alignments=480 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)I108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)Y110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 1 :GS 1vi9A 1 :LM T0375 3 :QILCVGL 1vi9A 4 :NILAIQS T0375 34 :RWQRGGNASNSCT 1vi9A 11 :HVVYGHAGNSAAE T0375 47 :ILSLLGAPCA 1vi9A 25 :PMRRLGANVW T0375 80 :DLRY 1vi9A 35 :PLNT T0375 86 :F 1vi9A 41 :F T0375 89 :T 1vi9A 44 :H T0375 101 :EASGSRT 1vi9A 45 :TQYGKWT T0375 118 :VSATDFEKVD 1vi9A 55 :MPPSHLTEIV T0375 128 :LTQFKWIHIEGRNASEQ 1vi9A 73 :LHTCDAVLSGYLGSAEQ T0375 145 :VKMLQRIDAH 1vi9A 94 :LGIVRQVKAA T0375 155 :NTRQPPEQ 1vi9A 106 :QAKYFCDP T0375 163 :K 1vi9A 120 :K T0375 166 :VSVEVEKPREELFQ 1vi9A 121 :GCIVAPGVAEFHVR T0375 180 :LFGYGDVVFVSKDVAKHL 1vi9A 136 :GLPASDIIAPNLVELEIL T0375 198 :GF 1vi9A 155 :EH T0375 200 :QSAEE 1vi9A 159 :NNVEE T0375 205 :ALRGLYGRV 1vi9A 167 :AARELIAQG T0375 216 :GAVLVCAWAEEG 1vi9A 176 :PQIVLVKHLARA T0375 228 :ADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGI 1vi9A 196 :MLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQE Number of specific fragments extracted= 20 number of extra gaps= 2 total=5910 Number of alignments=481 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)I108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)Y110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 1 :GS 1vi9A 1 :LM T0375 3 :QILCVGL 1vi9A 4 :NILAIQS T0375 34 :RWQRGGNASNSCT 1vi9A 11 :HVVYGHAGNSAAE T0375 47 :ILSLLGAPCAFMG 1vi9A 25 :PMRRLGANVWPLN T0375 83 :Y 1vi9A 38 :T T0375 86 :F 1vi9A 41 :F T0375 89 :T 1vi9A 44 :H T0375 101 :EASGSRT 1vi9A 45 :TQYGKWT T0375 118 :VSATDFEKVD 1vi9A 55 :MPPSHLTEIV T0375 128 :LTQFKWIHIEGRNASEQ 1vi9A 73 :LHTCDAVLSGYLGSAEQ T0375 145 :VKMLQRIDAH 1vi9A 94 :LGIVRQVKAA T0375 155 :NTRQPPEQ 1vi9A 106 :QAKYFCDP T0375 165 :RVSVEVEKPREELFQ 1vi9A 120 :KGCIVAPGVAEFHVR T0375 180 :LFGYGDVVFVSKDVAKHL 1vi9A 136 :GLPASDIIAPNLVELEIL T0375 198 :GF 1vi9A 155 :EH T0375 200 :QSAE 1vi9A 159 :NNVE T0375 204 :EALRGLYGRV 1vi9A 166 :LAARELIAQG T0375 216 :GAVLVCAWAE 1vi9A 176 :PQIVLVKHLA T0375 228 :ADALG 1vi9A 196 :MLLVT T0375 234 :DGKLLHSDA 1vi9A 201 :ADEAWHISR T0375 244 :PPPRV 1vi9A 210 :PLVDF T0375 249 :VDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQV 1vi9A 217 :RQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAA T0375 283 :AGKKCGLQGFDGI 1vi9A 254 :IMVTTKAMQEYEL Number of specific fragments extracted= 23 number of extra gaps= 2 total=5933 Number of alignments=482 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQ T0375 145 :VKMLQRIDAHN 1vi9A 94 :LGIVRQVKAAN T0375 156 :TRQPPEQ 1vi9A 107 :AKYFCDP T0375 163 :KIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1vi9A 119 :EKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEIL T0375 198 :GF 1vi9A 155 :EH T0375 200 :QSAEEALRGLYGRV 1vi9A 162 :EEAVLAARELIAQG T0375 216 :GAVLVCAWAE 1vi9A 176 :PQIVLVKHLA T0375 226 :EGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKK 1vi9A 194 :FEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEI Number of specific fragments extracted= 8 number of extra gaps= 0 total=5941 Number of alignments=483 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)V97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 86 :F 1vi9A 41 :F T0375 89 :TGSVPIAT 1vi9A 44 :HTQYGKWT T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQ T0375 145 :VKMLQRIDAHN 1vi9A 94 :LGIVRQVKAAN T0375 156 :TRQPPEQ 1vi9A 107 :AKYFCDP T0375 163 :KIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1vi9A 119 :EKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEIL T0375 198 :GF 1vi9A 155 :EH T0375 200 :QSAEEALRGLYGRV 1vi9A 162 :EEAVLAARELIAQG T0375 216 :GAVLVCAWAE 1vi9A 176 :PQIVLVKHLA T0375 226 :EGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAG 1vi9A 194 :FEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVY Number of specific fragments extracted= 10 number of extra gaps= 2 total=5951 Number of alignments=484 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)I108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)Y110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 2 :SQILCVGL 1vi9A 3 :KNILAIQS T0375 34 :RWQRGGNASNSCT 1vi9A 11 :HVVYGHAGNSAAE T0375 47 :ILSLLGAPCA 1vi9A 25 :PMRRLGANVW T0375 80 :DLRY 1vi9A 35 :PLNT T0375 86 :F 1vi9A 41 :F T0375 89 :T 1vi9A 44 :H T0375 101 :EASGSRT 1vi9A 45 :TQYGKWT T0375 118 :VSATDFEKVD 1vi9A 55 :MPPSHLTEIV T0375 128 :LTQFKWIHIEGRNASEQ 1vi9A 73 :LHTCDAVLSGYLGSAEQ T0375 145 :VKMLQRIDAH 1vi9A 94 :LGIVRQVKAA T0375 155 :NTRQPPEQ 1vi9A 106 :QAKYFCDP T0375 163 :K 1vi9A 120 :K T0375 166 :VSVEVEKPREELFQ 1vi9A 121 :GCIVAPGVAEFHVR T0375 180 :LFGYGDVVFVSKDVAKHL 1vi9A 136 :GLPASDIIAPNLVELEIL T0375 198 :GF 1vi9A 155 :EH T0375 200 :QSAEE 1vi9A 159 :NNVEE T0375 205 :ALRGLYGRV 1vi9A 167 :AARELIAQG T0375 216 :GAVLVCAWAEEG 1vi9A 176 :PQIVLVKHLARA T0375 228 :ADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKC 1vi9A 196 :MLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIM Number of specific fragments extracted= 19 number of extra gaps= 2 total=5970 Number of alignments=485 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)I108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)Y110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 2 :SQILCVGL 1vi9A 3 :KNILAIQS T0375 34 :RWQRGGNASNSCT 1vi9A 11 :HVVYGHAGNSAAE T0375 47 :ILSLLGAPCAFMG 1vi9A 25 :PMRRLGANVWPLN T0375 83 :Y 1vi9A 38 :T T0375 86 :F 1vi9A 41 :F T0375 89 :T 1vi9A 44 :H T0375 101 :EASGSRT 1vi9A 45 :TQYGKWT T0375 118 :VSATDFEKVD 1vi9A 55 :MPPSHLTEIV T0375 128 :LTQFKWIHIEGRNASEQ 1vi9A 73 :LHTCDAVLSGYLGSAEQ T0375 145 :VKMLQRIDAH 1vi9A 94 :LGIVRQVKAA T0375 155 :NTRQPPEQ 1vi9A 106 :QAKYFCDP T0375 165 :RVSVEVEKPREELFQ 1vi9A 120 :KGCIVAPGVAEFHVR T0375 180 :LFGYGDVVFVSKDVAKHL 1vi9A 136 :GLPASDIIAPNLVELEIL T0375 198 :GF 1vi9A 155 :EH T0375 200 :QSAE 1vi9A 159 :NNVE T0375 204 :EALRGLYGRV 1vi9A 166 :LAARELIAQG T0375 216 :GAVLVCAWAE 1vi9A 176 :PQIVLVKHLA T0375 228 :ADALG 1vi9A 196 :MLLVT T0375 234 :DGKLLHSDA 1vi9A 201 :ADEAWHISR T0375 244 :PPPRV 1vi9A 210 :PLVDF T0375 249 :VDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQV 1vi9A 217 :RQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAA T0375 283 :AGKKCGLQGFD 1vi9A 254 :IMVTTKAMQEY Number of specific fragments extracted= 22 number of extra gaps= 2 total=5992 Number of alignments=486 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T46 because first residue in template chain is (1vi9A)L1 Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)V97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 Warning: unaligning (T0375)Q290 because last residue in template chain is (1vi9A)E288 T0375 47 :ILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRY 1vi9A 2 :MKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNT T0375 86 :F 1vi9A 41 :F T0375 89 :TGSVPIAT 1vi9A 44 :HTQYGKWT T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSA T0375 143 :EQVKMLQRIDAHNT 1vi9A 92 :HILGIVRQVKAANP T0375 157 :RQPPEQ 1vi9A 108 :KYFCDP T0375 163 :KIRVSVEVEKPREELF 1vi9A 118 :PEKGCIVAPGVAEFHV T0375 179 :QLFGYGDVVFVSKDVAKHL 1vi9A 135 :HGLPASDIIAPNLVELEIL T0375 198 :GFQ 1vi9A 155 :EHA T0375 201 :SAEEALRGLYGRVRKGA 1vi9A 160 :NVEEAVLAARELIAQGP T0375 218 :VLVCA 1vi9A 178 :IVLVK T0375 223 :WAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1vi9A 191 :RDRFEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVT Number of specific fragments extracted= 12 number of extra gaps= 2 total=6004 Number of alignments=487 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)V97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 Warning: unaligning (T0375)Q290 because last residue in template chain is (1vi9A)E288 T0375 1 :GSQILC 1vi9A 2 :MKNILA T0375 53 :APCAFMGSMAPGHVADFVLDDLRRYSVDLRY 1vi9A 8 :IQSHVVYGHAGNSAAEFPMRRLGANVWPLNT T0375 86 :F 1vi9A 41 :F T0375 89 :TGSVPIAT 1vi9A 44 :HTQYGKWT T0375 100 :NE 1vi9A 55 :MP T0375 112 :DRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1vi9A 57 :PSHLTEIVQGIAAIDKLHTCDAVLSGYLGSA T0375 143 :EQVKMLQRIDAHNT 1vi9A 92 :HILGIVRQVKAANP T0375 157 :RQPPEQ 1vi9A 108 :KYFCDP T0375 163 :KIRVSVEVEKPREELF 1vi9A 118 :PEKGCIVAPGVAEFHV T0375 179 :QLFGYGDVVFVSKDVAKHL 1vi9A 135 :HGLPASDIIAPNLVELEIL T0375 198 :GFQ 1vi9A 155 :EHA T0375 201 :SAEEALRGLYGRVRKGA 1vi9A 160 :NVEEAVLAARELIAQGP T0375 218 :VLVCA 1vi9A 178 :IVLVK T0375 223 :WAEEGADALGPD 1vi9A 191 :RDRFEMLLVTAD T0375 236 :KLLHSDAFP 1vi9A 203 :EAWHISRPL T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1vi9A 213 :DFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVT Number of specific fragments extracted= 16 number of extra gaps= 2 total=6020 Number of alignments=488 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)I108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)Y110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 Warning: unaligning (T0375)Q290 because last residue in template chain is (1vi9A)E288 T0375 3 :QILCVGL 1vi9A 4 :NILAIQS T0375 34 :RWQR 1vi9A 11 :HVVY T0375 39 :GNASNSCT 1vi9A 15 :GHAGNSAA T0375 47 :ILSLLGAPCAF 1vi9A 25 :PMRRLGANVWP T0375 81 :LRY 1vi9A 36 :LNT T0375 86 :F 1vi9A 41 :F T0375 89 :T 1vi9A 44 :H T0375 101 :EASGSRT 1vi9A 45 :TQYGKWT T0375 111 :YD 1vi9A 55 :MP T0375 120 :ATDFEKVD 1vi9A 57 :PSHLTEIV T0375 128 :LTQFKWIHIEGRNAS 1vi9A 73 :LHTCDAVLSGYLGSA T0375 143 :EQVKMLQRIDAH 1vi9A 92 :HILGIVRQVKAA T0375 155 :NTRQPPEQ 1vi9A 106 :QAKYFCDP T0375 163 :KIRVSVEVEKPREELF 1vi9A 118 :PEKGCIVAPGVAEFHV T0375 179 :QLFGYGDVVFVSKDVAKHL 1vi9A 135 :HGLPASDIIAPNLVELEIL T0375 198 :GFQ 1vi9A 155 :EHA T0375 201 :SAEEALRGLYGRVRKGA 1vi9A 160 :NVEEAVLAARELIAQGP T0375 218 :VLVCAWAEEG 1vi9A 178 :IVLVKHLARA T0375 228 :ADALGPD 1vi9A 196 :MLLVTAD T0375 236 :KLLHSDAF 1vi9A 203 :EAWHISRP T0375 245 :PPR 1vi9A 211 :LVD T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1vi9A 216 :MRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVT Number of specific fragments extracted= 22 number of extra gaps= 2 total=6042 Number of alignments=489 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)I108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)Y110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 1 :GS 1vi9A 1 :LM T0375 3 :QILCVGL 1vi9A 4 :NILAIQS T0375 34 :RWQRGGNASNSCT 1vi9A 11 :HVVYGHAGNSAAE T0375 47 :ILSLLGAPCAFMG 1vi9A 25 :PMRRLGANVWPLN T0375 83 :Y 1vi9A 38 :T T0375 86 :F 1vi9A 41 :F T0375 89 :T 1vi9A 44 :H T0375 101 :EASGSRT 1vi9A 45 :TQYGKWT T0375 111 :Y 1vi9A 55 :M T0375 119 :SATDFEKVD 1vi9A 56 :PPSHLTEIV T0375 128 :LTQFKWIHIEGRNA 1vi9A 73 :LHTCDAVLSGYLGS T0375 142 :S 1vi9A 88 :E T0375 143 :EQVKMLQRIDAH 1vi9A 92 :HILGIVRQVKAA T0375 155 :NTRQPPEQ 1vi9A 106 :QAKYFCDP T0375 163 :KIRVSVEVEKPREELF 1vi9A 118 :PEKGCIVAPGVAEFHV T0375 179 :QLFGYGDVVFVSKDVAKHL 1vi9A 135 :HGLPASDIIAPNLVELEIL T0375 198 :GFQ 1vi9A 155 :EHA T0375 201 :SAEEALRGLYGRVRKGA 1vi9A 160 :NVEEAVLAARELIAQGP T0375 218 :VLVCAWAEEG 1vi9A 178 :IVLVKHLARA T0375 228 :ADALGPD 1vi9A 196 :MLLVTAD T0375 236 :KLLHSDAF 1vi9A 203 :EAWHISRP T0375 245 :PPRV 1vi9A 211 :LVDF T0375 249 :VDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1vi9A 217 :RQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVT Number of specific fragments extracted= 23 number of extra gaps= 2 total=6065 Number of alignments=490 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)V97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 50 :LLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRY 1vi9A 5 :ILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNT T0375 86 :F 1vi9A 41 :F T0375 89 :TGSVPIAT 1vi9A 44 :HTQYGKWT T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSA T0375 143 :EQVKMLQRIDAHNT 1vi9A 92 :HILGIVRQVKAANP T0375 157 :RQPPEQ 1vi9A 108 :KYFCDP T0375 163 :KIRVSVEVEKPREELF 1vi9A 118 :PEKGCIVAPGVAEFHV T0375 179 :QLFGYGDVVFVSKDVAKHL 1vi9A 135 :HGLPASDIIAPNLVELEIL T0375 198 :GFQ 1vi9A 155 :EHA T0375 201 :SAEEALRGLYGRVRKGA 1vi9A 160 :NVEEAVLAARELIAQGP T0375 218 :VLVCA 1vi9A 178 :IVLVK T0375 223 :WAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKK 1vi9A 191 :RDRFEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEI Number of specific fragments extracted= 12 number of extra gaps= 2 total=6077 Number of alignments=491 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)V97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 51 :LGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRY 1vi9A 6 :LAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNT T0375 86 :F 1vi9A 41 :F T0375 89 :TGSVPIAT 1vi9A 44 :HTQYGKWT T0375 100 :NE 1vi9A 55 :MP T0375 112 :DRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1vi9A 57 :PSHLTEIVQGIAAIDKLHTCDAVLSGYLGSA T0375 143 :EQVKMLQRIDAHNT 1vi9A 92 :HILGIVRQVKAANP T0375 157 :RQPPEQ 1vi9A 108 :KYFCDP T0375 163 :KIRVSVEVEKPREELF 1vi9A 118 :PEKGCIVAPGVAEFHV T0375 179 :QLFGYGDVVFVSKDVAKHL 1vi9A 135 :HGLPASDIIAPNLVELEIL T0375 198 :GFQ 1vi9A 155 :EHA T0375 201 :SAEEALRGLYGRVRKGA 1vi9A 160 :NVEEAVLAARELIAQGP T0375 218 :VLVCA 1vi9A 178 :IVLVK T0375 223 :WAEEGADALGPD 1vi9A 191 :RDRFEMLLVTAD T0375 236 :KLLHSDAFP 1vi9A 203 :EAWHISRPL T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGK 1vi9A 213 :DFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYE Number of specific fragments extracted= 15 number of extra gaps= 2 total=6092 Number of alignments=492 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)I108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)Y110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 1 :GSQILCVGL 1vi9A 2 :MKNILAIQS T0375 34 :RWQR 1vi9A 11 :HVVY T0375 39 :GNASNSCT 1vi9A 15 :GHAGNSAA T0375 47 :ILSLLGAPCAF 1vi9A 25 :PMRRLGANVWP T0375 81 :LRY 1vi9A 36 :LNT T0375 86 :F 1vi9A 41 :F T0375 89 :T 1vi9A 44 :H T0375 101 :EASGSRT 1vi9A 45 :TQYGKWT T0375 111 :YD 1vi9A 55 :MP T0375 120 :ATDFEKVD 1vi9A 57 :PSHLTEIV T0375 128 :LTQFKWIHIEGRNAS 1vi9A 73 :LHTCDAVLSGYLGSA T0375 143 :EQVKMLQRIDAH 1vi9A 92 :HILGIVRQVKAA T0375 155 :NTRQPPEQ 1vi9A 106 :QAKYFCDP T0375 163 :KIRVSVEVEKPREELF 1vi9A 118 :PEKGCIVAPGVAEFHV T0375 179 :QLFGYGDVVFVSKDVAKHL 1vi9A 135 :HGLPASDIIAPNLVELEIL T0375 198 :GFQ 1vi9A 155 :EHA T0375 201 :SAEEALRGLYGRVRKGA 1vi9A 160 :NVEEAVLAARELIAQGP T0375 218 :VLVCAWAEEG 1vi9A 178 :IVLVKHLARA T0375 228 :ADALGPD 1vi9A 196 :MLLVTAD T0375 236 :KLLHSDAF 1vi9A 203 :EAWHISRP T0375 245 :PPR 1vi9A 211 :LVD T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKC 1vi9A 216 :MRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIM Number of specific fragments extracted= 22 number of extra gaps= 2 total=6114 Number of alignments=493 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)I108 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)Y110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 1 :GSQILCVGL 1vi9A 2 :MKNILAIQS T0375 34 :RWQRGGNASNSCT 1vi9A 11 :HVVYGHAGNSAAE T0375 47 :ILSLLGAPCAFMG 1vi9A 25 :PMRRLGANVWPLN T0375 83 :Y 1vi9A 38 :T T0375 86 :F 1vi9A 41 :F T0375 89 :T 1vi9A 44 :H T0375 101 :EASGSRT 1vi9A 45 :TQYGKWT T0375 111 :Y 1vi9A 55 :M T0375 119 :SATDFEKVD 1vi9A 56 :PPSHLTEIV T0375 128 :LTQFKWIHIEGRNA 1vi9A 73 :LHTCDAVLSGYLGS T0375 142 :S 1vi9A 88 :E T0375 143 :EQVKMLQRIDAH 1vi9A 92 :HILGIVRQVKAA T0375 155 :NTRQPPEQ 1vi9A 106 :QAKYFCDP T0375 163 :KIRVSVEVEKPREELF 1vi9A 118 :PEKGCIVAPGVAEFHV T0375 179 :QLFGYGDVVFVSKDVAKHL 1vi9A 135 :HGLPASDIIAPNLVELEIL T0375 198 :GFQ 1vi9A 155 :EHA T0375 201 :SAEEALRGLYGRVRKGA 1vi9A 160 :NVEEAVLAARELIAQGP T0375 218 :VLVCAWAEEG 1vi9A 178 :IVLVKHLARA T0375 228 :ADALGPD 1vi9A 196 :MLLVTAD T0375 236 :KLLHSDAF 1vi9A 203 :EAWHISRP T0375 245 :PPRV 1vi9A 211 :LVDF T0375 249 :VDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKC 1vi9A 217 :RQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIM Number of specific fragments extracted= 22 number of extra gaps= 2 total=6136 Number of alignments=494 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T46 because first residue in template chain is (1vi9A)L1 Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)V97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 47 :ILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRY 1vi9A 2 :MKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNT T0375 86 :F 1vi9A 41 :F T0375 89 :TGSVPIAT 1vi9A 44 :HTQYGKWT T0375 100 :NEASGSRTILYYDRSLPDVSATDF 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHTCDA T0375 135 :HIEGRNASE 1vi9A 79 :VLSGYLGSA T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1vi9A 91 :EHILGIVRQVKAANPQAKYFCDPVMGHP T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQ 1vi9A 128 :VAEFHVRHGLPASDIIAPNLVELEILCEH T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEE 1vi9A 161 :VEEAVLAARELIAQGPQIVLVKHLAR T0375 227 :GADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVA 1vi9A 195 :EMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAV T0375 284 :GKKCGLQGFDGIV 1vi9A 253 :EIMVTTKAMQEYE Number of specific fragments extracted= 10 number of extra gaps= 2 total=6146 Number of alignments=495 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T46 because first residue in template chain is (1vi9A)L1 Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)V97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 47 :ILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRY 1vi9A 2 :MKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNT T0375 86 :F 1vi9A 41 :F T0375 89 :TGSVPIAT 1vi9A 44 :HTQYGKWT T0375 100 :NEASGSRTILYYDRSLPDVSA 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHT T0375 132 :KWIHIEGRNASE 1vi9A 76 :CDAVLSGYLGSA T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1vi9A 91 :EHILGIVRQVKAANPQAKYFCDPV T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1vi9A 130 :EFHVRHGLPASDIIAPNLVELEILCEH T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEE 1vi9A 161 :VEEAVLAARELIAQGPQIVLVKHLAR T0375 227 :GADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVA 1vi9A 195 :EMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAV T0375 284 :GKKCGLQGFDGIV 1vi9A 253 :EIMVTTKAMQEYE Number of specific fragments extracted= 10 number of extra gaps= 2 total=6156 Number of alignments=496 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)M61 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)A62 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)H65 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 2 :SQILCVGL 1vi9A 3 :KNILAIQS T0375 32 :SQRWQRGGNASN 1vi9A 11 :HVVYGHAGNSAA T0375 45 :CTILSLLGAPCAFMGS 1vi9A 23 :EFPMRRLGANVWPLNT T0375 63 :P 1vi9A 41 :F T0375 80 :DLR 1vi9A 44 :HTQ T0375 102 :ASGSR 1vi9A 47 :YGKWT T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAE T0375 144 :QVKMLQRIDAHNT 1vi9A 91 :EHILGIVRQVKAA T0375 157 :RQPPEQKIRVSVEVE 1vi9A 106 :QAKYFCDPVMGHPEK T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQ 1vi9A 128 :VAEFHVRHGLPASDIIAPNLVELEILCEH T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEE 1vi9A 162 :EEAVLAARELIAQGPQIVLVKHLAR T0375 227 :GADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAG 1vi9A 195 :EMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVY T0375 285 :KKCGLQGFD 1vi9A 254 :IMVTTKAMQ Number of specific fragments extracted= 13 number of extra gaps= 2 total=6169 Number of alignments=497 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)M61 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)A62 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)H65 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 2 :SQILCVGL 1vi9A 3 :KNILAIQS T0375 34 :RWQRGGNASNSC 1vi9A 11 :HVVYGHAGNSAA T0375 46 :TILSLLGAPCAFMGS 1vi9A 24 :FPMRRLGANVWPLNT T0375 63 :P 1vi9A 41 :F T0375 84 :TVFQ 1vi9A 44 :HTQY T0375 103 :SGSR 1vi9A 48 :GKWT T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAE T0375 144 :QVKMLQRIDAHN 1vi9A 91 :EHILGIVRQVKA T0375 156 :TRQPPEQKIRVS 1vi9A 105 :PQAKYFCDPVMG T0375 169 :EVE 1vi9A 117 :HPE T0375 172 :KPREELFQLF 1vi9A 127 :GVAEFHVRHG T0375 182 :GYGDVVFVSKDVAKHLGFQ 1vi9A 138 :PASDIIAPNLVELEILCEH T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEE 1vi9A 162 :EEAVLAARELIAQGPQIVLVKHLAR T0375 227 :GADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQV 1vi9A 195 :EMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAA T0375 283 :AGKKCGLQGFDGIV 1vi9A 254 :IMVTTKAMQEYELQ Number of specific fragments extracted= 15 number of extra gaps= 2 total=6184 Number of alignments=498 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set T0375 181 :FGYGDVVFVSKDVAKHLGFQ 1vi9A 137 :LPASDIIAPNLVELEILCEH T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEE 1vi9A 161 :VEEAVLAARELIAQGPQIVLVKHLAR T0375 227 :GADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALR 1vi9A 195 :EMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALE Number of specific fragments extracted= 3 number of extra gaps= 0 total=6187 Number of alignments=499 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)V97 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)I99 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 86 :F 1vi9A 41 :F T0375 89 :TGSVPIAT 1vi9A 44 :HTQYGKWT T0375 100 :NEASGSRTILYYDRSLP 1vi9A 55 :MPPSHLTEIVQGIAAID T0375 128 :LTQFKWIHIEGRNASE 1vi9A 72 :KLHTCDAVLSGYLGSA T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1vi9A 91 :EHILGIVRQVKAANPQAKYFCDPV T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1vi9A 130 :EFHVRHGLPASDIIAPNLVELEILCEH T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEE 1vi9A 161 :VEEAVLAARELIAQGPQIVLVKHLAR T0375 227 :GADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRF 1vi9A 195 :EMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEH Number of specific fragments extracted= 8 number of extra gaps= 2 total=6195 Number of alignments=500 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)M61 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)A62 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)H65 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 2 :SQILCVGL 1vi9A 3 :KNILAIQS T0375 32 :SQRWQRGGNASN 1vi9A 11 :HVVYGHAGNSAA T0375 45 :CTILSLLGAPCAFMGS 1vi9A 23 :EFPMRRLGANVWPLNT T0375 63 :P 1vi9A 41 :F T0375 80 :DLR 1vi9A 44 :HTQ T0375 102 :ASGSR 1vi9A 47 :YGKWT T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAE T0375 144 :QVKMLQRIDAHNT 1vi9A 91 :EHILGIVRQVKAA T0375 157 :RQPPEQKIRVSVEVE 1vi9A 106 :QAKYFCDPVMGHPEK T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQ 1vi9A 128 :VAEFHVRHGLPASDIIAPNLVELEILCEH T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEE 1vi9A 162 :EEAVLAARELIAQGPQIVLVKHLAR T0375 227 :GADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKK 1vi9A 195 :EMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEI Number of specific fragments extracted= 12 number of extra gaps= 2 total=6207 Number of alignments=501 # 1vi9A read from 1vi9A/merged-a2m # found chain 1vi9A in template set Warning: unaligning (T0375)M61 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)Q40 Warning: unaligning (T0375)A62 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)Q40 Warning: unaligning (T0375)G64 because of BadResidue code BAD_PEPTIDE in next template residue (1vi9A)N43 Warning: unaligning (T0375)H65 because of BadResidue code BAD_PEPTIDE at template residue (1vi9A)N43 Warning: unaligning (T0375)T107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vi9A)V54 Warning: unaligning (T0375)L109 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vi9A)V54 T0375 1 :GSQILCVGL 1vi9A 2 :MKNILAIQS T0375 34 :RWQRGGNASNSC 1vi9A 11 :HVVYGHAGNSAA T0375 46 :TILSLLGAPCAFMGS 1vi9A 24 :FPMRRLGANVWPLNT T0375 63 :P 1vi9A 41 :F T0375 84 :TVFQ 1vi9A 44 :HTQY T0375 103 :SGSR 1vi9A 48 :GKWT T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 1vi9A 55 :MPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAE T0375 144 :QVKMLQRIDAHN 1vi9A 91 :EHILGIVRQVKA T0375 156 :TRQPPEQKIRVS 1vi9A 105 :PQAKYFCDPVMG T0375 169 :EVE 1vi9A 117 :HPE T0375 172 :KPREELFQLF 1vi9A 127 :GVAEFHVRHG T0375 182 :GYGDVVFVSKDVAKHLGFQ 1vi9A 138 :PASDIIAPNLVELEILCEH T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEE 1vi9A 162 :EEAVLAARELIAQGPQIVLVKHLAR T0375 227 :GADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGK 1vi9A 195 :EMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYE Number of specific fragments extracted= 14 number of extra gaps= 2 total=6221 Number of alignments=502 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zjjA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zjjA expands to /projects/compbio/data/pdb/1zjj.pdb.gz 1zjjA:# T0375 read from 1zjjA/merged-a2m # 1zjjA read from 1zjjA/merged-a2m # adding 1zjjA to template set # found chain 1zjjA in template set T0375 1 :GSQILCVGLV 1zjjA 10 :GVLYRGNRAI T0375 12 :LDVISLVDKYPKEDSEIRCLS 1zjjA 20 :PGVRELIEFLKERGIPFAFLT T0375 33 :QRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVL 1zjjA 52 :EKLLKMGIDVSSSIIITSGLATRLYMSKHLDPGKIFVIG T0375 72 :DDLRRYSVDLRYTVFQTTGSVPIATVI 1zjjA 92 :EGLVKEMQALGWGIVTLDEARQGSWKE T0375 186 :VVFVSKDVAKHLGFQSAEEALRGLYGRVRK 1zjjA 119 :VKHVVVGLDPDLTYEKLKYATLAIRNGATF T0375 218 :VLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAG 1zjjA 149 :IGTNPDATLPGEEGIYPGAGSIIAALKVATNVEPIIIG T0375 260 :ASVIFSLSQGRSVQEALRFGCQVA 1zjjA 190 :EPMYEVVREMFPGEELWMVGDRLD T0375 284 :GKKCGL 1zjjA 219 :AKKFGM T0375 290 :QGFDGIV 1zjjA 237 :EDIKKSE Number of specific fragments extracted= 9 number of extra gaps= 0 total=6230 Number of alignments=503 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 9 :LVVLDV 1zjjA 3 :AIIFDM T0375 17 :LVDKYPK 1zjjA 13 :YRGNRAI T0375 25 :DSEIRCLSQRWQRG 1zjjA 20 :PGVRELIEFLKERG T0375 39 :GNASN 1zjjA 37 :AFLTN T0375 44 :SCTILSLLGAPCAFMGSMAPGHVADFVL 1zjjA 63 :SSIIITSGLATRLYMSKHLDPGKIFVIG T0375 72 :DDLRRYSVDLRYTVFQTTGSVPIATVI 1zjjA 92 :EGLVKEMQALGWGIVTLDEARQGSWKE T0375 186 :VVFVSKDVAKHLGFQSAEEALRGLYGRVRK 1zjjA 119 :VKHVVVGLDPDLTYEKLKYATLAIRNGATF T0375 217 :AVLVC 1zjjA 149 :IGTNP T0375 222 :AWAEEGADALG 1zjjA 156 :TLPGEEGIYPG T0375 233 :PDGKLLHSDAFP 1zjjA 190 :EPMYEVVREMFP T0375 248 :VVDTLGAGDTFNASVIFSLSQGR 1zjjA 202 :GEELWMVGDRLDTDIAFAKKFGM T0375 271 :S 1zjjA 232 :G T0375 272 :VQEALRFGCQVAGKKCG 1zjjA 235 :SLEDIKKSEYKPDLVLP T0375 291 :GFDG 1zjjA 252 :SVYE Number of specific fragments extracted= 14 number of extra gaps= 0 total=6244 Number of alignments=504 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 33 :QRWQRGGNASNSCT 1zjjA 27 :EFLKERGIPFAFLT T0375 47 :ILSLLGAPCAFMGSMAPGHVADFVL 1zjjA 66 :IITSGLATRLYMSKHLDPGKIFVIG T0375 72 :DDLRRYSVDLRYTVFQTTGSVPIATVI 1zjjA 92 :EGLVKEMQALGWGIVTLDEARQGSWKE T0375 232 :GPDGKLLHSDAFPPPRVVDTLGAGDT 1zjjA 119 :VKHVVVGLDPDLTYEKLKYATLAIRN T0375 259 :NASVIFSLSQGRSVQEALRFGCQV 1zjjA 145 :GATFIGTNPDATLPGEEGIYPGAG T0375 287 :CGLQGFDGIV 1zjjA 169 :SIIAALKVAT Number of specific fragments extracted= 6 number of extra gaps= 0 total=6250 Number of alignments=505 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 39 :GNASNSC 1zjjA 33 :GIPFAFL T0375 46 :TILSLLGAPCAFMGSMAPGHVADFVL 1zjjA 65 :IIITSGLATRLYMSKHLDPGKIFVIG T0375 72 :DDLRRYSVDLRYTVFQTTGSVPIATVI 1zjjA 92 :EGLVKEMQALGWGIVTLDEARQGSWKE T0375 232 :GPDGKLLHSDAFPPPRVVDTLGAGDT 1zjjA 119 :VKHVVVGLDPDLTYEKLKYATLAIRN T0375 259 :NASVIFSLSQGR 1zjjA 145 :GATFIGTNPDAT Number of specific fragments extracted= 5 number of extra gaps= 0 total=6255 Number of alignments=506 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 4 :I 1zjjA 2 :V T0375 9 :LVVLDV 1zjjA 3 :AIIFDM T0375 17 :LVDKYPKEDSEIRCLSQRWQRGGN 1zjjA 12 :LYRGNRAIPGVRELIEFLKERGIP T0375 41 :ASNSCTILSLLG 1zjjA 44 :TKTPEMYREKLL T0375 53 :APCAF 1zjjA 61 :VSSSI T0375 58 :MGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSV 1zjjA 82 :DPGKIFVIGGEGLVKEMQALGWGIVTLDEARQGSW T0375 188 :FVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVC 1zjjA 117 :KEVKHVVVGLDPDLTYEKLKYATLAIRNGATFIG T0375 222 :AWAEEGADALGPD 1zjjA 156 :TLPGEEGIYPGAG T0375 235 :GKLLHSDAFPPP 1zjjA 172 :AALKVATNVEPI T0375 247 :R 1zjjA 187 :K T0375 248 :VVDTLGAGDTFNA 1zjjA 202 :GEELWMVGDRLDT T0375 261 :SVIFSLSQGRSVQEALRFGCQVAGKKCGLQ 1zjjA 216 :IAFAKKFGMKAIMVLTGVSSLEDIKKSEYK T0375 292 :FDGIV 1zjjA 246 :PDLVL Number of specific fragments extracted= 13 number of extra gaps= 0 total=6268 Number of alignments=507 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 9 :LVVLDVIS 1zjjA 3 :AIIFDMDG T0375 17 :LVDKYPKEDSEIRCLSQRWQRG 1zjjA 12 :LYRGNRAIPGVRELIEFLKERG T0375 41 :ASNSCTILSLLG 1zjjA 44 :TKTPEMYREKLL T0375 53 :APCAF 1zjjA 61 :VSSSI T0375 58 :MGSMAPGHVADFVLDDLRRYSVDLRYTV 1zjjA 82 :DPGKIFVIGGEGLVKEMQALGWGIVTLD T0375 186 :VVFVSKDVAKHLGFQSAEEALRGLYGRVRK 1zjjA 119 :VKHVVVGLDPDLTYEKLKYATLAIRNGATF T0375 218 :VLVC 1zjjA 149 :IGTN T0375 222 :AWAEEGADALGPDG 1zjjA 156 :TLPGEEGIYPGAGS T0375 236 :KLLHSDAFP 1zjjA 193 :YEVVREMFP T0375 248 :VVDTLGAGDTFNASVIFSLSQGR 1zjjA 202 :GEELWMVGDRLDTDIAFAKKFGM T0375 271 :S 1zjjA 226 :A T0375 272 :VQEALRFGCQV 1zjjA 235 :SLEDIKKSEYK T0375 285 :KKCGLQGFDGIV 1zjjA 246 :PDLVLPSVYELI Number of specific fragments extracted= 13 number of extra gaps= 0 total=6281 Number of alignments=508 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 107 :TILYYDRSLPD 1zjjA 11 :VLYRGNRAIPG T0375 119 :SATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREEL 1zjjA 22 :VRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVSSSIIITSGLATRLYMSKH T0375 178 :FQLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGR 1zjjA 82 :DPGKIFVIGGEGLVKEMQALGWGIVTLDEARQGSW T0375 230 :ALGPDGKLLHSDAFPPPRVVDTLGAGDT 1zjjA 117 :KEVKHVVVGLDPDLTYEKLKYATLAIRN T0375 259 :NASVIFSLSQGRSVQEALR 1zjjA 145 :GATFIGTNPDATLPGEEGI Number of specific fragments extracted= 5 number of extra gaps= 0 total=6286 Number of alignments=509 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 114 :SLPD 1zjjA 18 :AIPG T0375 119 :SATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVS 1zjjA 22 :VRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVSSSIIITSG T0375 168 :VEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLV 1zjjA 72 :ATRLYMSKHLDPGKIFVIGGEGLVKEMQALGWGIVTLDEARQGSWKEVKHVVV T0375 221 :CAWAEEGADALGP 1zjjA 132 :YEKLKYATLAIRN T0375 235 :GKLL 1zjjA 145 :GATF T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIF 1zjjA 152 :NPDATLPGEEGIYPGAGSIIAALKVA T0375 276 :LRFGCQVAGK 1zjjA 178 :TNVEPIIIGK Number of specific fragments extracted= 7 number of extra gaps= 0 total=6293 Number of alignments=510 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCL 1zjjA 83 :PGKIFVIGGEGLVKEMQALGWGIVTLDEARQ T0375 200 :QSAEEALRGLYGRVRKGAVLVCAWAEEGADAL 1zjjA 114 :GSWKEVKHVVVGLDPDLTYEKLKYATLAIRNG T0375 233 :PDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1zjjA 146 :ATFIGTNPDATLPGEEGIYPGAGSIIAALKVATNVE T0375 269 :GRSVQEALRFGCQVAGKKCGLQGFDGIV 1zjjA 213 :DTDIAFAKKFGMKAIMVLTGVSSLEDIK Number of specific fragments extracted= 4 number of extra gaps= 0 total=6297 Number of alignments=511 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 1 :GSQILCVG 1zjjA 3 :AIIFDMDG T0375 9 :LVVLDVISLVDKYPKEDS 1zjjA 17 :RAIPGVRELIEFLKERGI T0375 27 :EIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGH 1zjjA 46 :TPEMYREKLLKMGIDVSSSIIITSGLATRLYMSKHLDPG T0375 66 :VADFVLDDLRRYSVDLRYTVFQ 1zjjA 90 :GGEGLVKEMQALGWGIVTLDEA T0375 185 :DVVFVSKDVAKHLGFQSAEE 1zjjA 118 :EVKHVVVGLDPDLTYEKLKY T0375 209 :LYGRVRKGAVLVCA 1zjjA 138 :ATLAIRNGATFIGT T0375 227 :GADALGPDGKLLHSDAFPPPRVVDT 1zjjA 152 :NPDATLPGEEGIYPGAGSIIAALKV T0375 252 :LGAGDTFN 1zjjA 178 :TNVEPIII T0375 269 :GRSVQEALRFGCQVAGKKCGLQGFDGIV 1zjjA 213 :DTDIAFAKKFGMKAIMVLTGVSSLEDIK Number of specific fragments extracted= 9 number of extra gaps= 0 total=6306 Number of alignments=512 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 167 :SVEVEKPREELFQLF 1zjjA 182 :PIIIGKPNEPMYEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=6307 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 177 :LFQ 1zjjA 97 :EMQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=6308 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 179 :QLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAV 1zjjA 85 :KIFVIGGEGLVKEMQALGWGIVTLDEARQGSWKEVKHVVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=6309 Number of alignments=513 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6309 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 1 :GS 1zjjA 7 :DM T0375 3 :QILCVGLVVLDVISLVDKYPKED 1zjjA 10 :GVLYRGNRAIPGVRELIEFLKER T0375 52 :GAPCAFMGSMAPG 1zjjA 33 :GIPFAFLTNNSTK T0375 66 :VADFVLDDLRRYSVDLR 1zjjA 46 :TPEMYREKLLKMGIDVS T0375 83 :YTVFQTTGSVPIATVIINE 1zjjA 64 :SIIITSGLATRLYMSKHLD T0375 103 :SGSRTILYYDR 1zjjA 83 :PGKIFVIGGEG T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1zjjA 102 :GWGIVTLDEARQGSWKEVKHVVVGLDPDLTY T0375 145 :VKMLQRIDAHNTRQPPEQK 1zjjA 135 :LKYATLAIRNGATFIGTNP T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1zjjA 154 :DATLPGEEGIYPGAGSIIAALKVATNV T0375 198 :GF 1zjjA 182 :PI T0375 200 :QSAEEALRGLYGRV 1zjjA 187 :KPNEPMYEVVREMF T0375 233 :PDGKLLHSDAF 1zjjA 201 :PGEELWMVGDR T0375 272 :VQEALRFGCQVAGKKCGL 1zjjA 212 :LDTDIAFAKKFGMKAIMV T0375 290 :QGFDGI 1zjjA 231 :TGVSSL Number of specific fragments extracted= 14 number of extra gaps= 0 total=6323 Number of alignments=514 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 1 :GS 1zjjA 7 :DM T0375 3 :QILCVGLVVLDVISL 1zjjA 10 :GVLYRGNRAIPGVRE T0375 44 :SCTILSLLGAPCAFMGSMA 1zjjA 25 :LIEFLKERGIPFAFLTNNS T0375 64 :GHVADFVLDDLRRYSVDLR 1zjjA 44 :TKTPEMYREKLLKMGIDVS T0375 83 :YTVFQTTGSVPIATVIINE 1zjjA 64 :SIIITSGLATRLYMSKHLD T0375 103 :SGSRTILYYDR 1zjjA 83 :PGKIFVIGGEG T0375 114 :SLPDVSATDFE 1zjjA 97 :EMQALGWGIVT T0375 125 :K 1zjjA 110 :E T0375 128 :LTQFKWIHIEGRNASEQ 1zjjA 116 :WKEVKHVVVGLDPDLTY T0375 145 :VKMLQRIDAHNTRQ 1zjjA 135 :LKYATLAIRNGATF T0375 187 :VFVS 1zjjA 149 :IGTN T0375 192 :DV 1zjjA 153 :PD T0375 200 :QSAEEALRGL 1zjjA 168 :GSIIAALKVA T0375 214 :RKGAVLVCAWAEEGADALGPD 1zjjA 178 :TNVEPIIIGKPNEPMYEVVRE T0375 239 :HSDAFP 1zjjA 199 :MFPGEE T0375 265 :SLSQGRSVQEALRFGCQVAGKKCGL 1zjjA 205 :LWMVGDRLDTDIAFAKKFGMKAIMV T0375 290 :QGFDGI 1zjjA 231 :TGVSSL Number of specific fragments extracted= 17 number of extra gaps= 0 total=6340 Number of alignments=515 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1zjjA)M1 Warning: unaligning (T0375)G294 because last residue in template chain is (1zjjA)K261 T0375 3 :QILCVG 1zjjA 2 :VAIIFD T0375 13 :DVISL 1zjjA 9 :DGVLY T0375 31 :LSQRWQRG 1zjjA 14 :RGNRAIPG T0375 51 :L 1zjjA 25 :L T0375 52 :GAPCAFMGSMAPG 1zjjA 33 :GIPFAFLTNNSTK T0375 66 :VADFVLDDLRRYSVDLR 1zjjA 46 :TPEMYREKLLKMGIDVS T0375 83 :YTVF 1zjjA 65 :IIIT T0375 102 :ASGSRTILYYDR 1zjjA 81 :LDPGKIFVIGGE T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1zjjA 102 :GWGIVTLDEARQGSWKEVKHVVVGLDPDLTY T0375 145 :VKMLQRIDAHNTRQPPEQ 1zjjA 135 :LKYATLAIRNGATFIGTN T0375 164 :IRVSVEVEK 1zjjA 153 :PDATLPGEE T0375 173 :PREELFQL 1zjjA 167 :AGSIIAAL T0375 195 :KHL 1zjjA 175 :KVA T0375 198 :GF 1zjjA 179 :NV T0375 203 :EEALRGLYGRVRKGAVLVCAWAEEG 1zjjA 190 :EPMYEVVREMFPGEELWMVGDRLDT T0375 234 :DGK 1zjjA 241 :KSE T0375 243 :F 1zjjA 244 :Y T0375 245 :PPRVV 1zjjA 245 :KPDLV T0375 250 :DTL 1zjjA 251 :PSV T0375 287 :CGLQGFD 1zjjA 254 :YELIDYL Number of specific fragments extracted= 20 number of extra gaps= 0 total=6360 Number of alignments=516 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1zjjA)M1 T0375 3 :QILCVG 1zjjA 2 :VAIIFD T0375 9 :LVV 1zjjA 10 :GVL T0375 30 :CLSQRWQRG 1zjjA 13 :YRGNRAIPG T0375 41 :ASNSCTILSLLGAPCAFMGSMAPG 1zjjA 22 :VRELIEFLKERGIPFAFLTNNSTK T0375 66 :VADFVLDDLRRYSVDLR 1zjjA 46 :TPEMYREKLLKMGIDVS T0375 83 :YTVF 1zjjA 65 :IIIT T0375 102 :ASGSRTILYYDR 1zjjA 81 :LDPGKIFVIGGE T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEG 1zjjA 102 :GWGIVTLDEARQGSWKEVKHVVVGL T0375 139 :RNASEQVKMLQRIDAHNTRQPPEQ 1zjjA 129 :DLTYEKLKYATLAIRNGATFIGTN T0375 170 :VEKPREELFQLFGYGDVVFVS 1zjjA 189 :NEPMYEVVREMFPGEELWMVG T0375 205 :ALRGLYGRV 1zjjA 215 :DIAFAKKFG T0375 216 :GAVLVCAWAE 1zjjA 224 :MKAIMVLTGV T0375 233 :PDGK 1zjjA 240 :KKSE T0375 243 :FPPPRVVDT 1zjjA 244 :YKPDLVLPS T0375 289 :LQGFDGI 1zjjA 253 :VYELIDY Number of specific fragments extracted= 15 number of extra gaps= 0 total=6375 Number of alignments=517 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 125 :KVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPP 1zjjA 3 :AIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAF Number of specific fragments extracted= 1 number of extra gaps= 0 total=6376 Number of alignments=518 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 45 :CTILSLLGAPCAFMGSMA 1zjjA 26 :IEFLKERGIPFAFLTNNS T0375 64 :GHVADFVLDDLRRYSVDLR 1zjjA 44 :TKTPEMYREKLLKMGIDVS T0375 83 :YTVFQTTGSVPIATVIINE 1zjjA 64 :SIIITSGLATRLYMSKHLD T0375 103 :SGSRTILYYDR 1zjjA 83 :PGKIFVIGGEG T0375 114 :SLPDVSATDFE 1zjjA 97 :EMQALGWGIVT T0375 125 :K 1zjjA 110 :E T0375 128 :LTQFKWIHIEGRNASEQ 1zjjA 116 :WKEVKHVVVGLDPDLTY T0375 145 :VKMLQRIDAHNTRQPPEQK 1zjjA 135 :LKYATLAIRNGATFIGTNP T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKH 1zjjA 154 :DATLPGEEGIYPGAGSIIAALKVATN T0375 216 :GAVLVCAWAEEGADALGPD 1zjjA 180 :VEPIIIGKPNEPMYEVVRE Number of specific fragments extracted= 10 number of extra gaps= 0 total=6386 Number of alignments=519 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 3 :QILCV 1zjjA 3 :AIIFD T0375 12 :LDVISL 1zjjA 8 :MDGVLY T0375 31 :LSQRWQRG 1zjjA 14 :RGNRAIPG T0375 51 :L 1zjjA 25 :L T0375 52 :GAPCAFMGSMAPG 1zjjA 33 :GIPFAFLTNNSTK T0375 66 :VADFVLDDLRRYSVDLR 1zjjA 46 :TPEMYREKLLKMGIDVS T0375 83 :YTVF 1zjjA 65 :IIIT T0375 102 :ASGSRTILYYDR 1zjjA 81 :LDPGKIFVIGGE T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1zjjA 102 :GWGIVTLDEARQGSWKEVKHVVVGLDPDLTY T0375 145 :VKMLQRIDAHNTRQPPEQ 1zjjA 135 :LKYATLAIRNGATFIGTN T0375 164 :IRVSVEVEK 1zjjA 153 :PDATLPGEE T0375 173 :PREELFQ 1zjjA 167 :AGSIIAA T0375 194 :AKHL 1zjjA 174 :LKVA T0375 198 :GF 1zjjA 179 :NV T0375 203 :EEALRGLYGRVRKGAVLVCAWAEE 1zjjA 190 :EPMYEVVREMFPGEELWMVGDRLD Number of specific fragments extracted= 15 number of extra gaps= 0 total=6401 Number of alignments=520 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1zjjA)M1 T0375 3 :QILCVG 1zjjA 2 :VAIIFD T0375 9 :LVV 1zjjA 10 :GVL T0375 30 :CLSQRWQRG 1zjjA 13 :YRGNRAIPG T0375 41 :ASNSCTILSLLGAPCAFMGSMAPG 1zjjA 22 :VRELIEFLKERGIPFAFLTNNSTK T0375 66 :VADFVLDDLRRYSVDLR 1zjjA 46 :TPEMYREKLLKMGIDVS T0375 83 :YTVF 1zjjA 65 :IIIT T0375 102 :ASGSRTILYYDR 1zjjA 81 :LDPGKIFVIGGE T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEG 1zjjA 102 :GWGIVTLDEARQGSWKEVKHVVVGL T0375 139 :RNASEQVKMLQRIDAHNTRQPPEQ 1zjjA 129 :DLTYEKLKYATLAIRNGATFIGTN T0375 164 :IRVSVEVEK 1zjjA 153 :PDATLPGEE T0375 173 :PREELFQLFGYGDVVFV 1zjjA 170 :IIAALKVATNVEPIIIG T0375 190 :S 1zjjA 189 :N T0375 203 :EEALRGLYGRVRKGAVLVCAWAEE 1zjjA 190 :EPMYEVVREMFPGEELWMVGDRLD Number of specific fragments extracted= 13 number of extra gaps= 0 total=6414 Number of alignments=521 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set Warning: unaligning (T0375)V11 because first residue in template chain is (1zjjA)M1 T0375 12 :LDVISLVDKYPKEDSEIRCL 1zjjA 2 :VAIIFDMDGVLYRGNRAIPG T0375 41 :ASNSCTILSLLGAPCAFMGSMAP 1zjjA 22 :VRELIEFLKERGIPFAFLTNNST T0375 65 :HVADFVLDDLRRYSVD 1zjjA 45 :KTPEMYREKLLKMGID T0375 81 :LRYTVFQTTGSVPIATVII 1zjjA 62 :SSSIIITSGLATRLYMSKH T0375 128 :LTQFKWIHIEGRNA 1zjjA 81 :LDPGKIFVIGGEGL T0375 142 :S 1zjjA 97 :E T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1zjjA 103 :WGIVTLDEARQGSWKEVKHV T0375 163 :KIRVSVEVEKPREELFQLFGYGDVVFVSKD 1zjjA 125 :GLDPDLTYEKLKYATLAIRNGATFIGTNPD T0375 195 :KHL 1zjjA 155 :ATL T0375 198 :GFQ 1zjjA 159 :GEE T0375 201 :SAEEALRGLYGRV 1zjjA 166 :GAGSIIAALKVAT T0375 216 :GA 1zjjA 179 :NV T0375 218 :VLVCAWAEEGADALGPDG 1zjjA 182 :PIIIGKPNEPMYEVVREM T0375 240 :SDAFP 1zjjA 200 :FPGEE T0375 265 :SLSQGRSVQEALRFGCQVAGKKCGL 1zjjA 205 :LWMVGDRLDTDIAFAKKFGMKAIMV T0375 290 :QGFDGIV 1zjjA 251 :PSVYELI Number of specific fragments extracted= 16 number of extra gaps= 0 total=6430 Number of alignments=522 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 12 :LDVISLVDKYPKEDSEIRCL 1zjjA 2 :VAIIFDMDGVLYRGNRAIPG T0375 41 :ASNSCTILSLLGAPCAFMGSMAP 1zjjA 22 :VRELIEFLKERGIPFAFLTNNST T0375 65 :HVADFVLDDLRRYSVDLRY 1zjjA 45 :KTPEMYREKLLKMGIDVSS T0375 84 :TVFQTTGSVPIATVIIN 1zjjA 65 :IIITSGLATRLYMSKHL T0375 129 :TQFKWIHIEGRNA 1zjjA 82 :DPGKIFVIGGEGL T0375 143 :EQVKMLQRIDAHN 1zjjA 103 :WGIVTLDEARQGS T0375 156 :TRQPPEQKIRV 1zjjA 122 :VVVGLDPDLTY T0375 171 :EKPREELFQLFGYGDVVFVSKD 1zjjA 133 :EKLKYATLAIRNGATFIGTNPD T0375 194 :AK 1zjjA 155 :AT T0375 197 :L 1zjjA 157 :L T0375 198 :GFQ 1zjjA 159 :GEE T0375 201 :SAEEALRGLYGRVRKGA 1zjjA 166 :GAGSIIAALKVATNVEP T0375 219 :LVCAWAEEGADALGPDG 1zjjA 183 :IIIGKPNEPMYEVVREM T0375 240 :SDAFP 1zjjA 200 :FPGEE T0375 265 :SLSQGRSVQEALRFGCQVAGKKCGL 1zjjA 205 :LWMVGDRLDTDIAFAKKFGMKAIMV T0375 290 :QGFD 1zjjA 251 :PSVY Number of specific fragments extracted= 16 number of extra gaps= 0 total=6446 Number of alignments=523 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 1 :GSQILCV 1zjjA 1 :MVAIIFD T0375 12 :LDVISLVDK 1zjjA 8 :MDGVLYRGN T0375 34 :RWQRG 1zjjA 17 :RAIPG T0375 48 :LSLL 1zjjA 22 :VREL T0375 52 :GAPCAFMGSMAP 1zjjA 33 :GIPFAFLTNNST T0375 65 :HVADFVLDDLRRYSVDLRYTVF 1zjjA 45 :KTPEMYREKLLKMGIDVSSSII T0375 128 :LTQFKWIHIEG 1zjjA 81 :LDPGKIFVIGG T0375 145 :VKMLQRIDAHNTRQP 1zjjA 92 :EGLVKEMQALGWGIV T0375 173 :PREELF 1zjjA 107 :TLDEAR T0375 179 :QLFGYGDVVFVS 1zjjA 114 :GSWKEVKHVVVG T0375 198 :GF 1zjjA 129 :DL T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEE 1zjjA 131 :TYEKLKYATLAIRNGATFIGTNPDA T0375 229 :DALGP 1zjjA 156 :TLPGE T0375 260 :ASVIFSL 1zjjA 168 :GSIIAAL T0375 292 :FDGIV 1zjjA 256 :LIDYL Number of specific fragments extracted= 15 number of extra gaps= 0 total=6461 Number of alignments=524 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 1 :GSQILCVG 1zjjA 1 :MVAIIFDM T0375 9 :LVV 1zjjA 10 :GVL T0375 30 :CLSQRWQRG 1zjjA 13 :YRGNRAIPG T0375 41 :ASNSCTILSLLGAPCAFMGSMAP 1zjjA 22 :VRELIEFLKERGIPFAFLTNNST T0375 65 :HVADFVLDDLRRYSVDL 1zjjA 45 :KTPEMYREKLLKMGIDV T0375 119 :SATDF 1zjjA 62 :SSSII T0375 128 :LTQFKWIHIE 1zjjA 81 :LDPGKIFVIG T0375 141 :ASEQVKMLQRI 1zjjA 91 :GEGLVKEMQAL T0375 155 :NTRQP 1zjjA 102 :GWGIV T0375 173 :PREELF 1zjjA 107 :TLDEAR T0375 179 :QLFGYGDVVFVS 1zjjA 114 :GSWKEVKHVVVG T0375 198 :GFQ 1zjjA 129 :DLT T0375 203 :EEALRGLYGRVRKGAVLVCAWAEE 1zjjA 132 :YEKLKYATLAIRNGATFIGTNPDA T0375 229 :DALGPD 1zjjA 156 :TLPGEE T0375 236 :KLLH 1zjjA 162 :GIYP T0375 253 :GAGDTFNASVIFS 1zjjA 166 :GAGSIIAALKVAT T0375 290 :QGFDGIV 1zjjA 254 :YELIDYL Number of specific fragments extracted= 17 number of extra gaps= 0 total=6478 Number of alignments=525 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 48 :LSLLGAPCAFMGSMAP 1zjjA 29 :LKERGIPFAFLTNNST T0375 65 :HVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFK 1zjjA 45 :KTPEMYREKLLKMGIDVSSSIIITSGLATRLYMSKHLDPGKIFVIGGEGLVKEMQALGWGIVTLDEAR Number of specific fragments extracted= 2 number of extra gaps= 0 total=6480 Number of alignments=526 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 44 :SCTILSLLGAPCAFMGSMAP 1zjjA 25 :LIEFLKERGIPFAFLTNNST T0375 65 :HVADFVLDDLRRYSVDLRY 1zjjA 45 :KTPEMYREKLLKMGIDVSS T0375 84 :TVFQTTGSVPIATVIINEAS 1zjjA 65 :IIITSGLATRLYMSKHLDPG T0375 105 :SRTILYYDRSL 1zjjA 85 :KIFVIGGEGLV T0375 129 :TQ 1zjjA 96 :KE T0375 143 :EQVKMLQRIDAHN 1zjjA 103 :WGIVTLDEARQGS T0375 156 :TRQPPEQKIRV 1zjjA 122 :VVVGLDPDLTY T0375 171 :EKPREELFQLFGYGDVVFVSKD 1zjjA 133 :EKLKYATLAIRNGATFIGTNPD T0375 194 :AK 1zjjA 155 :AT T0375 197 :L 1zjjA 157 :L T0375 198 :GFQ 1zjjA 159 :GEE T0375 201 :SAEEALRGLYGRVRKGA 1zjjA 166 :GAGSIIAALKVATNVEP T0375 219 :LVCAWAEEGADALGPDG 1zjjA 183 :IIIGKPNEPMYEVVREM T0375 240 :SDAFP 1zjjA 200 :FPGEE T0375 265 :SLSQGRSVQE 1zjjA 205 :LWMVGDRLDT Number of specific fragments extracted= 15 number of extra gaps= 0 total=6495 Number of alignments=527 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 1 :GSQILCV 1zjjA 1 :MVAIIFD T0375 12 :LDVISLVDK 1zjjA 8 :MDGVLYRGN T0375 34 :RWQRG 1zjjA 17 :RAIPG T0375 48 :LSLL 1zjjA 22 :VREL T0375 52 :GAPCAFMGSMAP 1zjjA 33 :GIPFAFLTNNST T0375 65 :HVADFVLDDLRRYSVDLRYTVF 1zjjA 45 :KTPEMYREKLLKMGIDVSSSII T0375 101 :EASGSRTILYYDR 1zjjA 80 :HLDPGKIFVIGGE T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRN 1zjjA 102 :GWGIVTLDEARQGSWKEVKHVVVGLDP T0375 142 :S 1zjjA 129 :D T0375 143 :EQVKMLQRIDAHNTRQ 1zjjA 133 :EKLKYATLAIRNGATF T0375 220 :VCAWAEE 1zjjA 149 :IGTNPDA T0375 229 :DALGPD 1zjjA 156 :TLPGEE T0375 236 :KLLH 1zjjA 162 :GIYP Number of specific fragments extracted= 13 number of extra gaps= 0 total=6508 Number of alignments=528 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1zjjA)M1 T0375 3 :QILCVG 1zjjA 2 :VAIIFD T0375 9 :LVV 1zjjA 10 :GVL T0375 30 :CLSQRWQRG 1zjjA 13 :YRGNRAIPG T0375 41 :ASNSCTILSLLGAPCAFMGSMAP 1zjjA 22 :VRELIEFLKERGIPFAFLTNNST T0375 65 :HVADFVLDDLRRYSVDL 1zjjA 45 :KTPEMYREKLLKMGIDV T0375 119 :SATDF 1zjjA 62 :SSSII T0375 128 :LTQFKWIHIE 1zjjA 81 :LDPGKIFVIG T0375 141 :ASEQVKMLQRI 1zjjA 91 :GEGLVKEMQAL T0375 155 :NTRQP 1zjjA 102 :GWGIV T0375 173 :PREELF 1zjjA 107 :TLDEAR T0375 179 :QLFGYGDVVFVS 1zjjA 114 :GSWKEVKHVVVG T0375 198 :GFQ 1zjjA 129 :DLT T0375 203 :EEALRGLYGRVRKGAVLVCAWAEE 1zjjA 132 :YEKLKYATLAIRNGATFIGTNPDA T0375 229 :DALGPD 1zjjA 156 :TLPGEE T0375 236 :KLLH 1zjjA 162 :GIYP T0375 253 :GAGDTFNASVIF 1zjjA 166 :GAGSIIAALKVA Number of specific fragments extracted= 16 number of extra gaps= 0 total=6524 Number of alignments=529 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set Warning: unaligning (T0375)V11 because first residue in template chain is (1zjjA)M1 T0375 12 :LDVISLVDKYPKEDSEIRCLSQRWQ 1zjjA 2 :VAIIFDMDGVLYRGNRAIPGVRELI T0375 46 :TILSLLGAPCAFMGSMAPG 1zjjA 27 :EFLKERGIPFAFLTNNSTK T0375 66 :VADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDR 1zjjA 46 :TPEMYREKLLKMGIDVSSSIIITSGLATRLYMSKHLDPGKIFVIGGEG T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASE 1zjjA 101 :LGWGIVTLDEARQGSWKEVKHVVVGLDPDL T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1zjjA 133 :EKLKYATLAIRNGATFIGTNPDATLPGE T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQ 1zjjA 171 :IAALKVATNVEPIIIGKPNEPMYEVVREM T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTL 1zjjA 209 :GDRLDTDIAFAKKFGMKAIMVLTGVSSLEDIKKSEYKPDLVLPSVYELIDYL Number of specific fragments extracted= 7 number of extra gaps= 0 total=6531 Number of alignments=530 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 1 :GS 1zjjA 1 :MV T0375 13 :DVISLVDKYPKEDSEIRCLSQRW 1zjjA 3 :AIIFDMDGVLYRGNRAIPGVREL T0375 45 :CTILSLLGAPCAFMGSMAPG 1zjjA 26 :IEFLKERGIPFAFLTNNSTK T0375 66 :VADFVLDDLRRYSVDLRYTVFQ 1zjjA 46 :TPEMYREKLLKMGIDVSSSIII T0375 88 :TTGSVPIATVIINEASGSRTILYYDRSLPDVSATDF 1zjjA 69 :SGLATRLYMSKHLDPGKIFVIGGEGLVKEMQALGWG T0375 124 :EKVDLTQFKW 1zjjA 112 :RQGSWKEVKH T0375 135 :HIEGRNASE 1zjjA 122 :VVVGLDPDL T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1zjjA 133 :EKLKYATLAIRNGATFIGTNPDAT T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1zjjA 173 :ALKVATNVEPIIIGKPNEPMYEVVREM T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTL 1zjjA 209 :GDRLDTDIAFAKKFGMKAIMVLTGVSSLEDIKKSEYKPDLVLPSVYELIDYL Number of specific fragments extracted= 10 number of extra gaps= 0 total=6541 Number of alignments=531 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set Warning: unaligning (T0375)G294 because last residue in template chain is (1zjjA)K261 T0375 1 :GSQILCV 1zjjA 1 :MVAIIFD T0375 12 :LDVISLVDKYPKED 1zjjA 8 :MDGVLYRGNRAIPG T0375 48 :LSLL 1zjjA 22 :VREL T0375 52 :GAPCAFMGSMAPGH 1zjjA 33 :GIPFAFLTNNSTKT T0375 67 :ADFVLDDLRRYSVDLRYTVF 1zjjA 47 :PEMYREKLLKMGIDVSSSII T0375 102 :ASGSRTILYYDR 1zjjA 82 :DPGKIFVIGGEG T0375 114 :SLPDVSATDFEKVDLTQFKWIHI 1zjjA 102 :GWGIVTLDEARQGSWKEVKHVVV T0375 138 :GRNASE 1zjjA 125 :GLDPDL T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVS 1zjjA 132 :YEKLKYATLAIRNGATFIGTNPDA T0375 173 :PREELFQLF 1zjjA 167 :AGSIIAALK T0375 182 :GYGDVVFVSKDVAKHLGFQ 1zjjA 181 :EPIIIGKPNEPMYEVVREM T0375 207 :RGLYGRVRKGAVLVCAWAEE 1zjjA 215 :DIAFAKKFGMKAIMVLTGVS T0375 233 :PDGKL 1zjjA 240 :KKSEY T0375 244 :PPPRVVDTL 1zjjA 245 :KPDLVLPSV Number of specific fragments extracted= 14 number of extra gaps= 0 total=6555 Number of alignments=532 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set Warning: unaligning (T0375)G294 because last residue in template chain is (1zjjA)K261 T0375 1 :GSQILCV 1zjjA 1 :MVAIIFD T0375 12 :LDVISLVDKYPKED 1zjjA 8 :MDGVLYRGNRAIPG T0375 41 :ASNSCTILSLLGAPCAFMGSMAPGH 1zjjA 22 :VRELIEFLKERGIPFAFLTNNSTKT T0375 67 :ADFVLDDLRRYSVDL 1zjjA 47 :PEMYREKLLKMGIDV T0375 82 :RYTVF 1zjjA 64 :SIIIT T0375 103 :SGSRTILYYDR 1zjjA 82 :DPGKIFVIGGE T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVS 1zjjA 102 :GWGIVTLDEARQGSWKEVKHVVVGLDPDLTYEKLKYATLAIRNGATFIGTNPDA T0375 172 :KPREELFQLFGYGDVVFVS 1zjjA 191 :PMYEVVREMFPGEELWMVG T0375 207 :RGLYGRVRKGAVLVCAWAE 1zjjA 215 :DIAFAKKFGMKAIMVLTGV T0375 233 :PDG 1zjjA 240 :KKS T0375 242 :AFPPPRVVDTL 1zjjA 243 :EYKPDLVLPSV Number of specific fragments extracted= 11 number of extra gaps= 0 total=6566 Number of alignments=533 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 48 :LSLLGAPCAFMGSMAPG 1zjjA 29 :LKERGIPFAFLTNNSTK T0375 66 :VADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFK 1zjjA 46 :TPEMYREKLLKMGIDVSSSIIITSGLATRLYMSKHLDPGKIFVIGGEGLVKEMQALGWGIVTLDEAR Number of specific fragments extracted= 2 number of extra gaps= 0 total=6568 Number of alignments=534 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 48 :LSLLGAPCAFMGSMAPG 1zjjA 29 :LKERGIPFAFLTNNSTK T0375 66 :VADFVLDDLRRYSVDLRYTVFQ 1zjjA 46 :TPEMYREKLLKMGIDVSSSIII T0375 88 :TTGSVPIATVIINEASGSRTILYYDRSLPDVSATDF 1zjjA 69 :SGLATRLYMSKHLDPGKIFVIGGEGLVKEMQALGWG T0375 124 :EKVDLTQFKW 1zjjA 112 :RQGSWKEVKH T0375 135 :HIEGRNASE 1zjjA 122 :VVVGLDPDL T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1zjjA 133 :EKLKYATLAIRNGATFIGTNPDAT T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1zjjA 173 :ALKVATNVEPIIIGKPNEPMYEVVREM Number of specific fragments extracted= 7 number of extra gaps= 0 total=6575 Number of alignments=535 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 2 :SQILCV 1zjjA 2 :VAIIFD T0375 12 :LDVISLVDKYPKED 1zjjA 8 :MDGVLYRGNRAIPG T0375 48 :LSLL 1zjjA 22 :VREL T0375 52 :GAPCAFMGSMAPGH 1zjjA 33 :GIPFAFLTNNSTKT T0375 67 :ADFVLDDLRRYSVDLRYTVF 1zjjA 47 :PEMYREKLLKMGIDVSSSII T0375 102 :ASGSRTILYYDR 1zjjA 82 :DPGKIFVIGGEG T0375 114 :SLPDVSATDFEKVDLTQFKWIHI 1zjjA 102 :GWGIVTLDEARQGSWKEVKHVVV T0375 138 :GRNASE 1zjjA 125 :GLDPDL T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVS 1zjjA 132 :YEKLKYATLAIRNGATFIGTNPDA T0375 173 :PREELFQLF 1zjjA 167 :AGSIIAALK T0375 182 :GYGDVVFVSKDVAKHLGFQ 1zjjA 181 :EPIIIGKPNEPMYEVVREM T0375 207 :RGLYGRVRKGAVLVCAWA 1zjjA 215 :DIAFAKKFGMKAIMVLTG Number of specific fragments extracted= 12 number of extra gaps= 0 total=6587 Number of alignments=536 # 1zjjA read from 1zjjA/merged-a2m # found chain 1zjjA in template set T0375 1 :GSQILCV 1zjjA 1 :MVAIIFD T0375 12 :LDVISLVDKYPKED 1zjjA 8 :MDGVLYRGNRAIPG T0375 41 :ASNSCTILSLLGAPCAFMGSMAPGH 1zjjA 22 :VRELIEFLKERGIPFAFLTNNSTKT T0375 67 :ADFVLDDLRRYSVDL 1zjjA 47 :PEMYREKLLKMGIDV T0375 82 :RYTVF 1zjjA 64 :SIIIT T0375 103 :SGSRTILYYDR 1zjjA 82 :DPGKIFVIGGE T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVS 1zjjA 102 :GWGIVTLDEARQGSWKEVKHVVVGLDPDLTYEKLKYATLAIRNGATFIGTNPDA T0375 172 :KPREELFQLFGYGDVVFVS 1zjjA 191 :PMYEVVREMFPGEELWMVG T0375 207 :RGLYGRVRKGAVLVCAWA 1zjjA 215 :DIAFAKKFGMKAIMVLTG Number of specific fragments extracted= 9 number of extra gaps= 0 total=6596 Number of alignments=537 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vk4A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vk4A expands to /projects/compbio/data/pdb/1vk4.pdb.gz 1vk4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 232, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 234, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 244, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 246, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 248, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 250, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 252, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 254, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 256, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 258, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 260, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 262, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 264, because occupancy 0.500 <= existing 0.500 in 1vk4A Skipped atom 266, because occupancy 0.500 <= existing 0.500 in 1vk4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1392, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1394, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1396, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1402, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1404, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1406, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1408, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1507, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1509, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1511, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1513, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1515, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1517, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1765, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1767, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1977, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1979, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1981, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 1983, because occupancy 0.350 <= existing 0.650 in 1vk4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 2198, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 2200, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 2202, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 2204, because occupancy 0.350 <= existing 0.650 in 1vk4A Skipped atom 2206, because occupancy 0.350 <= existing 0.650 in 1vk4A # T0375 read from 1vk4A/merged-a2m # 1vk4A read from 1vk4A/merged-a2m # adding 1vk4A to template set # found chain 1vk4A in template set Warning: unaligning (T0375)V7 because first residue in template chain is (1vk4A)I-6 Warning: unaligning (T0375)N100 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 8 :GLVVLDVISLVD 1vk4A -5 :HHHHHHMITFIG T0375 21 :YPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVAD 1vk4A 7 :HVSKDVNVVDGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSK T0375 70 :V 1vk4A 55 :F T0375 72 :DDLRRYSVDL 1vk4A 56 :SFLRDNGVEV T0375 86 :FQTTGSVPIATVII 1vk4A 66 :VFLKSPRTTSIENR T0375 107 :TILYYDRSLPDVSATDFE 1vk4A 87 :RESFLISAADPFTESDLA T0375 127 :DLTQ 1vk4A 105 :FIEG T0375 132 :KWIHIEGRNA 1vk4A 109 :EAVHINPLWY T0375 149 :QRIDAHNTRQPPEQKIRVSVEV 1vk4A 119 :GEFPEDLIPVLRRKVMFLSADA T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1vk4A 154 :YRDWEMKEKYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEALRGLYGR 1vk4A 182 :GTNDLRESCRIIRSF T0375 214 :RKGAVLVC 1vk4A 197 :GAKIILAT T0375 226 :EGADALGPDGKLLHSDAFPPP 1vk4A 205 :HASGVIVFDGNFYEASFRSWS T0375 248 :VVDTLGAGDTFNASVIFS 1vk4A 226 :LEGRTGRGDTCTAAFLVG T0375 266 :LSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1vk4A 245 :VFKKMSIEKATKFAAAVTSVKMRHPGPLRRE Number of specific fragments extracted= 15 number of extra gaps= 0 total=6611 Number of alignments=538 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)V7 because first residue in template chain is (1vk4A)I-6 Warning: unaligning (T0375)N100 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 8 :GLVVLDVISLVD 1vk4A -5 :HHHHHHMITFIG T0375 21 :YPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVAD 1vk4A 7 :HVSKDVNVVDGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSK T0375 70 :V 1vk4A 55 :F T0375 72 :DDLRRYSVDL 1vk4A 56 :SFLRDNGVEV T0375 86 :FQTTGSVPIATVII 1vk4A 66 :VFLKSPRTTSIENR T0375 107 :TILYYDRSLPDVSATDFE 1vk4A 87 :RESFLISAADPFTESDLA T0375 127 :DLTQ 1vk4A 105 :FIEG T0375 132 :KWIHIEGRNASEQVKM 1vk4A 109 :EAVHINPLWYGEFPED T0375 148 :LQRIDAHNTRQPPEQKIRVSVE 1vk4A 126 :IPVLRRKVMFLSADAQGFVRVP T0375 170 :VEKPREELFQLFGYGDVVFVSKDV 1vk4A 153 :VYRDWEMKEKYLKYLDLFKVDSRE T0375 194 :AKHLGFQSAEEALRGLYGR 1vk4A 178 :ETLTGTNDLRESCRIIRSF T0375 214 :RKGAVLVC 1vk4A 197 :GAKIILAT T0375 223 :WAE 1vk4A 205 :HAS T0375 227 :GADAL 1vk4A 208 :GVIVF T0375 234 :DGKLLHSDAFPPP 1vk4A 213 :DGNFYEASFRSWS T0375 248 :VVDTLGAGDTFNASVIFS 1vk4A 226 :LEGRTGRGDTCTAAFLVG T0375 266 :LSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1vk4A 245 :VFKKMSIEKATKFAAAVTSVKMRHPGPLRRE Number of specific fragments extracted= 17 number of extra gaps= 0 total=6628 Number of alignments=539 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)V7 because first residue in template chain is (1vk4A)I-6 Warning: unaligning (T0375)N100 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 8 :GLVVLDVISLVD 1vk4A -5 :HHHHHHMITFIG T0375 21 :YPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVAD 1vk4A 7 :HVSKDVNVVDGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSK T0375 70 :V 1vk4A 55 :F T0375 72 :DDLRRYSVDL 1vk4A 56 :SFLRDNGVEV T0375 86 :FQTTGSVPIATVII 1vk4A 66 :VFLKSPRTTSIENR T0375 107 :TILYYDRSLPDVSATDFE 1vk4A 87 :RESFLISAADPFTESDLA T0375 127 :DLTQ 1vk4A 105 :FIEG T0375 132 :KWIHIEGRNA 1vk4A 109 :EAVHINPLWY T0375 149 :QRIDAHNTRQPPEQKIRVSVEV 1vk4A 119 :GEFPEDLIPVLRRKVMFLSADA T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1vk4A 154 :YRDWEMKEKYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEALRGLYGR 1vk4A 182 :GTNDLRESCRIIRSF T0375 214 :RKGAVLVC 1vk4A 197 :GAKIILAT T0375 226 :EGADALGPDGKLLHSDAFPPP 1vk4A 205 :HASGVIVFDGNFYEASFRSWS T0375 248 :VVDTLGAGDTFNASVIFS 1vk4A 226 :LEGRTGRGDTCTAAFLVG T0375 266 :LSQGRSVQEALRFGCQVAGKKCGLQGFDGI 1vk4A 245 :VFKKMSIEKATKFAAAVTSVKMRHPGPLRR Number of specific fragments extracted= 15 number of extra gaps= 0 total=6643 Number of alignments=540 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)N100 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 12 :LDVISLVD 1vk4A -1 :HHMITFIG T0375 21 :YPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVAD 1vk4A 7 :HVSKDVNVVDGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSK T0375 70 :V 1vk4A 55 :F T0375 72 :DDLRRYSVDL 1vk4A 56 :SFLRDNGVEV T0375 86 :FQTTGSVPIATVII 1vk4A 66 :VFLKSPRTTSIENR T0375 107 :TILYYDRSLPDVSATDFE 1vk4A 87 :RESFLISAADPFTESDLA T0375 127 :DLTQ 1vk4A 105 :FIEG T0375 132 :KWIHIEGRNASEQVKM 1vk4A 109 :EAVHINPLWYGEFPED T0375 148 :LQRIDAHNTRQPPEQKIRVSVE 1vk4A 126 :IPVLRRKVMFLSADAQGFVRVP T0375 170 :VEKPREELFQLFGYGDVVFVSKDV 1vk4A 153 :VYRDWEMKEKYLKYLDLFKVDSRE T0375 194 :AKHLGFQSAEEALRGLYGR 1vk4A 178 :ETLTGTNDLRESCRIIRSF T0375 214 :RKGAVLVC 1vk4A 197 :GAKIILAT T0375 223 :WAE 1vk4A 205 :HAS T0375 227 :GADAL 1vk4A 208 :GVIVF T0375 234 :DGKLLHSDAFPPP 1vk4A 213 :DGNFYEASFRSWS T0375 248 :VVDTLGAGDTFNASVIFS 1vk4A 226 :LEGRTGRGDTCTAAFLVG T0375 266 :LSQGRSVQEALRFGCQVAGKKCGLQGFD 1vk4A 245 :VFKKMSIEKATKFAAAVTSVKMRHPGPL Number of specific fragments extracted= 17 number of extra gaps= 0 total=6660 Number of alignments=541 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I4 because first residue in template chain is (1vk4A)I-6 Warning: unaligning (T0375)I98 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)L109 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 5 :LCVGLVVLDVI 1vk4A -5 :HHHHHHMITFI T0375 19 :DKYP 1vk4A 6 :GHVS T0375 24 :EDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVAD 1vk4A 10 :KDVNVVDGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSK T0375 70 :V 1vk4A 55 :F T0375 72 :DDLRRYSVDLRYTV 1vk4A 56 :SFLRDNGVEVVFLK T0375 88 :TTGSVPIATV 1vk4A 70 :SPRTTSIENR T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQR 1vk4A 87 :RESFLISAADPFTESDLAFIEGEAVHINPLWYGEFPEDLIP T0375 151 :IDAHNTRQPPEQKIRVSVEVEK 1vk4A 129 :LRRKVMFLSADAQGFVRVPENE T0375 173 :PREELFQLFGYGDVVFVS 1vk4A 156 :DWEMKEKYLKYLDLFKVD T0375 191 :KDVAKHLGFQSAEEALRGLYGR 1vk4A 175 :REAETLTGTNDLRESCRIIRSF T0375 215 :KGAVLVCAWAE 1vk4A 197 :GAKIILATHAS T0375 227 :GADAL 1vk4A 208 :GVIVF T0375 234 :DGKLLHSDAFPPP 1vk4A 213 :DGNFYEASFRSWS T0375 248 :VVDTLGAGDTFNASVIFSL 1vk4A 226 :LEGRTGRGDTCTAAFLVGF T0375 267 :SQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1vk4A 246 :FKKMSIEKATKFAAAVTSVKMRHPGPLRRE Number of specific fragments extracted= 15 number of extra gaps= 0 total=6675 Number of alignments=542 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I4 because first residue in template chain is (1vk4A)I-6 Warning: unaligning (T0375)I98 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)L109 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 5 :LCVGLVVLDVI 1vk4A -5 :HHHHHHMITFI T0375 19 :DKYP 1vk4A 6 :GHVS T0375 24 :EDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVAD 1vk4A 10 :KDVNVVDGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSK T0375 70 :V 1vk4A 55 :F T0375 72 :DDLRRYSVDLRYTV 1vk4A 56 :SFLRDNGVEVVFLK T0375 88 :TTGSVPIATV 1vk4A 70 :SPRTTSIENR T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQR 1vk4A 87 :RESFLISAADPFTESDLAFIEGEAVHINPLWYGEFPEDLIP T0375 151 :IDAHNTRQPPEQKIRVSVEVEK 1vk4A 129 :LRRKVMFLSADAQGFVRVPENE T0375 173 :PREELFQLFGYGDVVFVSK 1vk4A 156 :DWEMKEKYLKYLDLFKVDS T0375 192 :DVAKHLGFQSAEEALRGLYGR 1vk4A 176 :EAETLTGTNDLRESCRIIRSF T0375 215 :KGAVLVCAWAE 1vk4A 197 :GAKIILATHAS T0375 227 :GADAL 1vk4A 208 :GVIVF T0375 234 :DGKLLHSDAFPPP 1vk4A 213 :DGNFYEASFRSWS T0375 248 :VVDTLGAGDTFNASVIFSL 1vk4A 226 :LEGRTGRGDTCTAAFLVGF T0375 267 :SQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1vk4A 246 :FKKMSIEKATKFAAAVTSVKMRHPGPLRRE Number of specific fragments extracted= 15 number of extra gaps= 0 total=6690 Number of alignments=543 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I98 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)L109 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 11 :VLDVI 1vk4A 1 :MITFI T0375 19 :DKYP 1vk4A 6 :GHVS T0375 24 :EDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVAD 1vk4A 10 :KDVNVVDGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSK T0375 70 :V 1vk4A 55 :F T0375 72 :DDLRRYSVDLRYTV 1vk4A 56 :SFLRDNGVEVVFLK T0375 88 :TTGSVPIATV 1vk4A 70 :SPRTTSIENR T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQR 1vk4A 87 :RESFLISAADPFTESDLAFIEGEAVHINPLWYGEFPEDLIP T0375 151 :IDAHNTRQPPEQKIRVSVEVEK 1vk4A 129 :LRRKVMFLSADAQGFVRVPENE T0375 173 :PREELFQLFGYGDVVFVS 1vk4A 156 :DWEMKEKYLKYLDLFKVD T0375 191 :KDVAKHLGFQSAEEALRGLYGR 1vk4A 175 :REAETLTGTNDLRESCRIIRSF T0375 215 :KGAVLVCAWAE 1vk4A 197 :GAKIILATHAS T0375 227 :GADAL 1vk4A 208 :GVIVF T0375 234 :DGKLLHSDAFPPP 1vk4A 213 :DGNFYEASFRSWS T0375 248 :VVDTLGAGDTFNASVIFSL 1vk4A 226 :LEGRTGRGDTCTAAFLVGF T0375 267 :SQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1vk4A 246 :FKKMSIEKATKFAAAVTSVKMRHPGPLRRE Number of specific fragments extracted= 15 number of extra gaps= 0 total=6705 Number of alignments=544 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I98 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)L109 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 11 :VLDVI 1vk4A 1 :MITFI T0375 19 :DKYP 1vk4A 6 :GHVS T0375 24 :EDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVAD 1vk4A 10 :KDVNVVDGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSK T0375 70 :V 1vk4A 55 :F T0375 72 :DDLRRYSVDLRYTV 1vk4A 56 :SFLRDNGVEVVFLK T0375 88 :TTGSVPIATV 1vk4A 70 :SPRTTSIENR T0375 110 :YYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQR 1vk4A 87 :RESFLISAADPFTESDLAFIEGEAVHINPLWYGEFPEDLIP T0375 151 :IDAHNTRQPPEQKIRVSVEVEK 1vk4A 129 :LRRKVMFLSADAQGFVRVPENE T0375 173 :PREELFQLFGYGDVVFVSK 1vk4A 156 :DWEMKEKYLKYLDLFKVDS T0375 192 :DVAKHLGFQSAEEALRGLYGR 1vk4A 176 :EAETLTGTNDLRESCRIIRSF T0375 215 :KGAVLVCAWAE 1vk4A 197 :GAKIILATHAS T0375 227 :GADAL 1vk4A 208 :GVIVF T0375 234 :DGKLLHSDAFPPP 1vk4A 213 :DGNFYEASFRSWS T0375 248 :VVDTLGAGDTFNASVIFSL 1vk4A 226 :LEGRTGRGDTCTAAFLVGF T0375 267 :SQGRSVQEALRFGCQVAGKKCGLQGFDGI 1vk4A 246 :FKKMSIEKATKFAAAVTSVKMRHPGPLRR Number of specific fragments extracted= 15 number of extra gaps= 0 total=6720 Number of alignments=545 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)N100 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 1 :GSQILCVGLVVLDVISLVDKY 1vk4A -1 :HHMITFIGHVSKDVNVVDGKR T0375 34 :RWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVL 1vk4A 20 :EIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSKFSF T0375 74 :LRRYSVDLRYTVFQ 1vk4A 58 :LRDNGVEVVFLKSP T0375 92 :VPIATVII 1vk4A 72 :RTTSIENR T0375 107 :TILYYDR 1vk4A 87 :RESFLIS T0375 122 :DFEKVDLTQFKWIHIEGRNA 1vk4A 99 :TESDLAFIEGEAVHINPLWY T0375 149 :QRIDAHNTRQPPEQKIRVSVEVEKP 1vk4A 119 :GEFPEDLIPVLRRKVMFLSADAQGF T0375 174 :REELFQLFGYGDVVFVSKDVAK 1vk4A 157 :WEMKEKYLKYLDLFKVDSREAE T0375 196 :HLGFQSAEEALRGLYGR 1vk4A 180 :LTGTNDLRESCRIIRSF T0375 213 :VR 1vk4A 198 :AK T0375 218 :VLVCAWAE 1vk4A 200 :IILATHAS T0375 227 :GADAL 1vk4A 208 :GVIVF T0375 234 :DGKLLHSDAFPP 1vk4A 213 :DGNFYEASFRSW T0375 247 :RVVDTLGAGDTFNASVIFSLS 1vk4A 225 :SLEGRTGRGDTCTAAFLVGFV T0375 268 :QGRSVQEALRFGCQVAGKKCGLQGFDGIV 1vk4A 247 :KKMSIEKATKFAAAVTSVKMRHPGPLRRE Number of specific fragments extracted= 15 number of extra gaps= 0 total=6735 Number of alignments=546 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I99 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 1 :GSQILCVGLVVLDVISLVDKY 1vk4A -1 :HHMITFIGHVSKDVNVVDGKR T0375 34 :RWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVL 1vk4A 20 :EIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSKFSF T0375 74 :LRRYSVDLRYTVFQ 1vk4A 58 :LRDNGVEVVFLKSP T0375 91 :SVPIATVI 1vk4A 72 :RTTSIENR T0375 107 :TILYYDR 1vk4A 87 :RESFLIS T0375 122 :DFEKVDLTQFKWIHIEGRNA 1vk4A 99 :TESDLAFIEGEAVHINPLWY T0375 149 :QRIDAHNTRQPPEQKIRVSVEVEKP 1vk4A 119 :GEFPEDLIPVLRRKVMFLSADAQGF T0375 174 :REELFQLFGYGDVVFVSKDVA 1vk4A 157 :WEMKEKYLKYLDLFKVDSREA T0375 195 :KHLGFQSAEEALRGLYGR 1vk4A 179 :TLTGTNDLRESCRIIRSF T0375 214 :R 1vk4A 198 :A T0375 218 :VLVCAWAE 1vk4A 200 :IILATHAS T0375 227 :GADAL 1vk4A 208 :GVIVF T0375 234 :DGKLLHSDAFPP 1vk4A 213 :DGNFYEASFRSW T0375 247 :RVVDTLGAGDTFNASVIFSLS 1vk4A 225 :SLEGRTGRGDTCTAAFLVGFV T0375 268 :QGRSVQEALRFGCQVAGKKCGLQGFDGIV 1vk4A 247 :KKMSIEKATKFAAAVTSVKMRHPGPLRRE Number of specific fragments extracted= 15 number of extra gaps= 0 total=6750 Number of alignments=547 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)N100 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 4 :ILCVGLVVLDVISLVDKY 1vk4A 2 :ITFIGHVSKDVNVVDGKR T0375 34 :RWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVL 1vk4A 20 :EIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSKFSF T0375 74 :LRRYSVDLRYTVFQ 1vk4A 58 :LRDNGVEVVFLKSP T0375 92 :VPIATVII 1vk4A 72 :RTTSIENR T0375 107 :TILYYDR 1vk4A 87 :RESFLIS T0375 122 :DFEKVDLTQFKWIHIEGRNA 1vk4A 99 :TESDLAFIEGEAVHINPLWY T0375 149 :QRIDAHNTRQPPEQKIRVSVEVEKP 1vk4A 119 :GEFPEDLIPVLRRKVMFLSADAQGF T0375 174 :REELFQLFGYGDVVFVSKDVAK 1vk4A 157 :WEMKEKYLKYLDLFKVDSREAE T0375 196 :HLGFQSAEEALRGLYGR 1vk4A 180 :LTGTNDLRESCRIIRSF T0375 213 :VR 1vk4A 198 :AK T0375 218 :VLVCAWAE 1vk4A 200 :IILATHAS T0375 227 :GADAL 1vk4A 208 :GVIVF T0375 234 :DGKLLHSDAFPP 1vk4A 213 :DGNFYEASFRSW T0375 247 :RVVDTLGAGDTFNASVIFSLS 1vk4A 225 :SLEGRTGRGDTCTAAFLVGFV T0375 268 :QGRSVQEALRFGCQVAGKKCGLQG 1vk4A 247 :KKMSIEKATKFAAAVTSVKMRHPG Number of specific fragments extracted= 15 number of extra gaps= 0 total=6765 Number of alignments=548 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I99 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 3 :QILCVGLVVLDVISLVDKY 1vk4A 1 :MITFIGHVSKDVNVVDGKR T0375 34 :RWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVL 1vk4A 20 :EIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSKFSF T0375 74 :LRRYSVDLRYTVFQ 1vk4A 58 :LRDNGVEVVFLKSP T0375 91 :SVPIATVI 1vk4A 72 :RTTSIENR T0375 107 :TILYYDR 1vk4A 87 :RESFLIS T0375 122 :DFEKVDLTQFKWIHIEGRNA 1vk4A 99 :TESDLAFIEGEAVHINPLWY T0375 149 :QRIDAHNTRQPPEQKIRVSVEVEKP 1vk4A 119 :GEFPEDLIPVLRRKVMFLSADAQGF T0375 174 :REELFQLFGYGDVVFVSKDVA 1vk4A 157 :WEMKEKYLKYLDLFKVDSREA T0375 195 :KHLGFQSAEEALRGLYGR 1vk4A 179 :TLTGTNDLRESCRIIRSF T0375 214 :R 1vk4A 198 :A T0375 218 :VLVCAWAE 1vk4A 200 :IILATHAS T0375 227 :GADAL 1vk4A 208 :GVIVF T0375 234 :DGKLLHSDAFPP 1vk4A 213 :DGNFYEASFRSW T0375 247 :RVVDTLGAGDTFNASVIFSLS 1vk4A 225 :SLEGRTGRGDTCTAAFLVGFV T0375 268 :QGRSVQEALRFGCQVAGKKCGLQGF 1vk4A 247 :KKMSIEKATKFAAAVTSVKMRHPGP Number of specific fragments extracted= 15 number of extra gaps= 0 total=6780 Number of alignments=549 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set T0375 44 :SCTILSLLGA 1vk4A 189 :SCRIIRSFGA Number of specific fragments extracted= 1 number of extra gaps= 0 total=6781 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=6781 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I99 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 1 :GS 1vk4A 0 :HM T0375 4 :ILCVGLVVLDVISL 1vk4A 2 :ITFIGHVSKDVNVV T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 1vk4A 16 :DGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVS T0375 70 :VLDDLRRYSVDL 1vk4A 54 :KFSFLRDNGVEV T0375 85 :VFQTTGSVPIATVI 1vk4A 66 :VFLKSPRTTSIENR T0375 107 :TILYYDRSLPDVSATDFEKV 1vk4A 87 :RESFLISAADPFTESDLAFI T0375 130 :QFKWIHIEGRNASEQ 1vk4A 107 :EGEAVHINPLWYGEF T0375 145 :VKMLQRIDAHNTRQPPEQ 1vk4A 123 :EDLIPVLRRKVMFLSADA T0375 163 :KIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1vk4A 146 :VPENEKLVYRDWEMKEKYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEALRGLYGRV 1vk4A 182 :GTNDLRESCRIIRSFG T0375 216 :GAVLVCAW 1vk4A 198 :AKIILATH T0375 225 :EEGADAL 1vk4A 206 :ASGVIVF T0375 234 :DGKLLHSDAF 1vk4A 213 :DGNFYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLS 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFV T0375 268 :QGRSVQEALRFGCQVAGKKCGLQGFDGI 1vk4A 247 :KKMSIEKATKFAAAVTSVKMRHPGPLRR Number of specific fragments extracted= 15 number of extra gaps= 0 total=6796 Number of alignments=550 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I99 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 1 :GS 1vk4A 0 :HM T0375 4 :ILCVGLVVLDVISL 1vk4A 2 :ITFIGHVSKDVNVV T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 1vk4A 16 :DGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVS T0375 70 :VLDDLRRYSVDL 1vk4A 54 :KFSFLRDNGVEV T0375 85 :VFQTTGSVPIATVI 1vk4A 66 :VFLKSPRTTSIENR T0375 107 :TILYYDRSLPDVSATDFEKV 1vk4A 87 :RESFLISAADPFTESDLAFI T0375 130 :QFKWIHIEGRNASEQ 1vk4A 107 :EGEAVHINPLWYGEF T0375 145 :VKMLQRIDAHNTRQPPEQ 1vk4A 123 :EDLIPVLRRKVMFLSADA T0375 163 :K 1vk4A 149 :N T0375 166 :VSVE 1vk4A 150 :EKLV T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1vk4A 154 :YRDWEMKEKYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEALRGLYGRV 1vk4A 182 :GTNDLRESCRIIRSFG T0375 216 :GAVLVCAW 1vk4A 198 :AKIILATH T0375 225 :EEGADAL 1vk4A 206 :ASGVIVF T0375 234 :DGKLLHSDAF 1vk4A 213 :DGNFYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLS 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFV T0375 268 :QGRSVQEALRFGCQVAGKKCGLQGFDGI 1vk4A 247 :KKMSIEKATKFAAAVTSVKMRHPGPLRR Number of specific fragments extracted= 17 number of extra gaps= 0 total=6813 Number of alignments=551 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)N100 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 4 :ILCVGLVVLDVISL 1vk4A 2 :ITFIGHVSKDVNVV T0375 24 :ED 1vk4A 16 :DG T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 1vk4A 18 :KREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVS T0375 74 :LRRYSVDLRYTVF 1vk4A 58 :LRDNGVEVVFLKS T0375 91 :SVPIATVII 1vk4A 71 :PRTTSIENR T0375 107 :TILYYDRSLPDVSATDFEKV 1vk4A 87 :RESFLISAADPFTESDLAFI T0375 130 :QFKWIHIEGRNASEQ 1vk4A 107 :EGEAVHINPLWYGEF T0375 145 :VKMLQRIDAHNTRQPPEQ 1vk4A 123 :EDLIPVLRRKVMFLSADA T0375 163 :KIRVSVEV 1vk4A 149 :NEKLVYRD T0375 174 :REELFQLFGYGDVVFVSKDVAKHL 1vk4A 157 :WEMKEKYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEALRGLYGRV 1vk4A 182 :GTNDLRESCRIIRSFG T0375 216 :GAVLVCAW 1vk4A 198 :AKIILATH T0375 225 :EEGADAL 1vk4A 206 :ASGVIVF T0375 234 :DGKLLHSDAF 1vk4A 213 :DGNFYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQG 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFVFK T0375 270 :RSVQEALRFGCQVAGKKCGLQGFDGI 1vk4A 249 :MSIEKATKFAAAVTSVKMRHPGPLRR Number of specific fragments extracted= 16 number of extra gaps= 0 total=6829 Number of alignments=552 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)N100 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 1 :GS 1vk4A -6 :IH T0375 4 :ILCVGLVVLDVISL 1vk4A 2 :ITFIGHVSKDVNVV T0375 24 :ED 1vk4A 16 :DG T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHV 1vk4A 18 :KREIAYGGGVVMGAITSSLLGVKTKVITKCTREDV T0375 74 :LRRYSVDLRYTVF 1vk4A 58 :LRDNGVEVVFLKS T0375 91 :SVPIATVII 1vk4A 71 :PRTTSIENR T0375 107 :TILYYDRSLPDVSATDFEKV 1vk4A 87 :RESFLISAADPFTESDLAFI T0375 130 :QFKWIHIEGRNASEQ 1vk4A 107 :EGEAVHINPLWYGEF T0375 145 :VKMLQRIDAHNTRQPPEQ 1vk4A 123 :EDLIPVLRRKVMFLSADA T0375 163 :K 1vk4A 149 :N T0375 166 :VSVEVEKP 1vk4A 150 :EKLVYRDW T0375 175 :EELFQLFGYGDVVFVSKDVAKHL 1vk4A 158 :EMKEKYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEALRGLYGRV 1vk4A 182 :GTNDLRESCRIIRSFG T0375 216 :GAVLVCAW 1vk4A 198 :AKIILATH T0375 225 :EEGADAL 1vk4A 206 :ASGVIVF T0375 234 :DGKLLHSDAF 1vk4A 213 :DGNFYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFVF T0375 269 :GRSVQEALRFGCQVAGKKCGLQGFD 1vk4A 248 :KMSIEKATKFAAAVTSVKMRHPGPL T0375 294 :GI 1vk4A 274 :RE Number of specific fragments extracted= 19 number of extra gaps= 0 total=6848 Number of alignments=553 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I99 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 4 :ILCVGLVVLDVISL 1vk4A 2 :ITFIGHVSKDVNVV T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 1vk4A 16 :DGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVS T0375 70 :VLDDLRRYSVDL 1vk4A 54 :KFSFLRDNGVEV T0375 85 :VFQTTGSVPIATVI 1vk4A 66 :VFLKSPRTTSIENR T0375 107 :TILYYDRSLPDVSATDFEKV 1vk4A 87 :RESFLISAADPFTESDLAFI T0375 130 :QFKWIHIEGRNASEQ 1vk4A 107 :EGEAVHINPLWYGEF T0375 145 :VKMLQRIDAHNTRQPPEQ 1vk4A 123 :EDLIPVLRRKVMFLSADA T0375 163 :KIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1vk4A 146 :VPENEKLVYRDWEMKEKYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEALRGLYGRV 1vk4A 182 :GTNDLRESCRIIRSFG T0375 216 :GAVLVCAW 1vk4A 198 :AKIILATH T0375 225 :EEGADAL 1vk4A 206 :ASGVIVF T0375 234 :DGKLLHSDAF 1vk4A 213 :DGNFYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLS 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFV T0375 268 :QGRSVQEALRFGCQVAGKKCGLQGF 1vk4A 247 :KKMSIEKATKFAAAVTSVKMRHPGP Number of specific fragments extracted= 14 number of extra gaps= 0 total=6862 Number of alignments=554 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I99 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 4 :ILCVGLVVLDVISL 1vk4A 2 :ITFIGHVSKDVNVV T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 1vk4A 16 :DGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVS T0375 70 :VLDDLRRYSVDL 1vk4A 54 :KFSFLRDNGVEV T0375 85 :VFQTTGSVPIATVI 1vk4A 66 :VFLKSPRTTSIENR T0375 107 :TILYYDRSLPDVSATDFEKV 1vk4A 87 :RESFLISAADPFTESDLAFI T0375 130 :QFKWIHIEGRNASEQ 1vk4A 107 :EGEAVHINPLWYGEF T0375 145 :VKMLQRIDAHNTRQPPEQ 1vk4A 123 :EDLIPVLRRKVMFLSADA T0375 163 :K 1vk4A 149 :N T0375 166 :VSVE 1vk4A 150 :EKLV T0375 171 :EKPREELFQLFGYGDVVFVSKDVAKHL 1vk4A 154 :YRDWEMKEKYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEALRGLYGRV 1vk4A 182 :GTNDLRESCRIIRSFG T0375 216 :GAVLVCAW 1vk4A 198 :AKIILATH T0375 225 :EEGADAL 1vk4A 206 :ASGVIVF T0375 234 :DGKLLHSDAF 1vk4A 213 :DGNFYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLS 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFV T0375 268 :QGRSVQEALRFGCQVAGKKCGLQGFD 1vk4A 247 :KKMSIEKATKFAAAVTSVKMRHPGPL Number of specific fragments extracted= 16 number of extra gaps= 0 total=6878 Number of alignments=555 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)N100 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 2 :SQILCVGLVVLDVISL 1vk4A 0 :HMITFIGHVSKDVNVV T0375 24 :ED 1vk4A 16 :DG T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 1vk4A 18 :KREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVS T0375 74 :LRRYSVDLRYTVF 1vk4A 58 :LRDNGVEVVFLKS T0375 91 :SVPIATVII 1vk4A 71 :PRTTSIENR T0375 107 :TILYYDRSLPDVSATDFEKV 1vk4A 87 :RESFLISAADPFTESDLAFI T0375 130 :QFKWIHIEGRNASEQ 1vk4A 107 :EGEAVHINPLWYGEF T0375 145 :VKMLQRIDAHNTRQPPEQ 1vk4A 123 :EDLIPVLRRKVMFLSADA T0375 163 :KIRVSVEV 1vk4A 149 :NEKLVYRD T0375 174 :REELFQLFGYGDVVFVSKDVAKHL 1vk4A 157 :WEMKEKYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEALRGLYGRV 1vk4A 182 :GTNDLRESCRIIRSFG T0375 216 :GAVLVCAW 1vk4A 198 :AKIILATH T0375 225 :EEGADAL 1vk4A 206 :ASGVIVF T0375 234 :DGKLLHSDAF 1vk4A 213 :DGNFYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQG 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFVFK T0375 270 :RSVQEALRFGCQVAGKKCGLQGFD 1vk4A 249 :MSIEKATKFAAAVTSVKMRHPGPL Number of specific fragments extracted= 16 number of extra gaps= 0 total=6894 Number of alignments=556 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)N100 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 3 :QILCVGLVVLDVISL 1vk4A 1 :MITFIGHVSKDVNVV T0375 24 :ED 1vk4A 16 :DG T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHV 1vk4A 18 :KREIAYGGGVVMGAITSSLLGVKTKVITKCTREDV T0375 74 :LRRYSVDLRYTVF 1vk4A 58 :LRDNGVEVVFLKS T0375 91 :SVPIATVII 1vk4A 71 :PRTTSIENR T0375 107 :TILYYDRSLPDVSATDFEKV 1vk4A 87 :RESFLISAADPFTESDLAFI T0375 130 :QFKWIHIEGRNASEQ 1vk4A 107 :EGEAVHINPLWYGEF T0375 145 :VKMLQRIDAHNTRQPPEQ 1vk4A 123 :EDLIPVLRRKVMFLSADA T0375 163 :K 1vk4A 149 :N T0375 166 :VSVEVEKP 1vk4A 150 :EKLVYRDW T0375 175 :EELFQLFGYGDVVFVSKDVAKHL 1vk4A 158 :EMKEKYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEALRGLYGRV 1vk4A 182 :GTNDLRESCRIIRSFG T0375 216 :GAVLVCAW 1vk4A 198 :AKIILATH T0375 225 :EEGADAL 1vk4A 206 :ASGVIVF T0375 234 :DGKLLHSDAF 1vk4A 213 :DGNFYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFVF T0375 269 :GRSVQEALRFGCQVAGKKCGLQGFD 1vk4A 248 :KMSIEKATKFAAAVTSVKMRHPGPL Number of specific fragments extracted= 17 number of extra gaps= 0 total=6911 Number of alignments=557 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I4 because first residue in template chain is (1vk4A)I-6 Warning: unaligning (T0375)I99 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 5 :LCVGLVVLDVISLVDK 1vk4A -5 :HHHHHHMITFIGHVSK T0375 25 :DSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFV 1vk4A 11 :DVNVVDGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSKFS T0375 73 :DLRRYSVD 1vk4A 57 :FLRDNGVE T0375 84 :TVFQTTGSVPIATVI 1vk4A 65 :VVFLKSPRTTSIENR T0375 107 :TILYYDRSLPDVSATDFEKV 1vk4A 87 :RESFLISAADPFTESDLAFI T0375 130 :QFKWIHIEGRNA 1vk4A 107 :EGEAVHINPLWY T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 1vk4A 120 :EFPEDLIPVLRRKVMFLSADA T0375 163 :KIRVSVEVEKPREEL 1vk4A 149 :NEKLVYRDWEMKEKY T0375 181 :FGYGDVVFVSKDVAKHL 1vk4A 164 :LKYLDLFKVDSREAETL T0375 198 :GFQSAEEALRGLYGR 1vk4A 182 :GTNDLRESCRIIRSF T0375 216 :GAVLVCAWAEEGADALGPD 1vk4A 197 :GAKIILATHASGVIVFDGN T0375 237 :LLHSDAF 1vk4A 216 :FYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLS 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFV T0375 268 :QGRSVQEALRFGCQVAGKKCGLQGFDGIV 1vk4A 247 :KKMSIEKATKFAAAVTSVKMRHPGPLRRE Number of specific fragments extracted= 14 number of extra gaps= 0 total=6925 Number of alignments=558 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I4 because first residue in template chain is (1vk4A)I-6 Warning: unaligning (T0375)I99 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 5 :LCVGLVVLDVISLVDK 1vk4A -5 :HHHHHHMITFIGHVSK T0375 25 :DSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADF 1vk4A 11 :DVNVVDGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSKF T0375 72 :DDLRRYSVDL 1vk4A 56 :SFLRDNGVEV T0375 85 :VFQTTGSVPIATVI 1vk4A 66 :VFLKSPRTTSIENR T0375 107 :TILYYDRSLPDVSATDFEKV 1vk4A 87 :RESFLISAADPFTESDLAFI T0375 130 :QFKWIHIEGRNA 1vk4A 107 :EGEAVHINPLWY T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 1vk4A 120 :EFPEDLIPVLRRKVMFLSADA T0375 163 :KIRVSVEVEKPRE 1vk4A 149 :NEKLVYRDWEMKE T0375 179 :QLFGYGDVVFVSKDVAKHL 1vk4A 162 :KYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEA 1vk4A 182 :GTNDLRES T0375 209 :LYGRVRKGAVLVCAWAEEGADALGPD 1vk4A 190 :CRIIRSFGAKIILATHASGVIVFDGN T0375 237 :LLHSDAF 1vk4A 216 :FYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLS 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFV T0375 268 :QGRSVQEALRFGCQVAGKKCGLQGFDGIV 1vk4A 247 :KKMSIEKATKFAAAVTSVKMRHPGPLRRE Number of specific fragments extracted= 14 number of extra gaps= 0 total=6939 Number of alignments=559 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I98 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 3 :QILCVGLVVLDVISL 1vk4A 1 :MITFIGHVSKDVNVV T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVAD 1vk4A 16 :DGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSK T0375 72 :DDLRRYSVDLRYTVF 1vk4A 56 :SFLRDNGVEVVFLKS T0375 89 :TGSVPIATV 1vk4A 71 :PRTTSIENR T0375 107 :TILYYDRSLPDVSATDFEKV 1vk4A 87 :RESFLISAADPFTESDLAFI T0375 130 :QFKWIHIEGRNAS 1vk4A 107 :EGEAVHINPLWYG T0375 143 :EQV 1vk4A 125 :LIP T0375 150 :RIDAHNTRQPPEQ 1vk4A 128 :VLRRKVMFLSADA T0375 163 :KIRVSVEVEKPRE 1vk4A 149 :NEKLVYRDWEMKE T0375 179 :QLFGYGDVVFVSKDVAKHL 1vk4A 162 :KYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEA 1vk4A 182 :GTNDLRES T0375 209 :LYGRVRKGA 1vk4A 190 :CRIIRSFGA T0375 218 :VLVCA 1vk4A 200 :IILAT T0375 224 :AEEGADALGPD 1vk4A 205 :HASGVIVFDGN T0375 237 :LLHSDAF 1vk4A 216 :FYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFVF T0375 269 :GRSVQEALRFGCQVAGKKCGLQGF 1vk4A 248 :KMSIEKATKFAAAVTSVKMRHPGP T0375 293 :DGIV 1vk4A 277 :LEAI Number of specific fragments extracted= 18 number of extra gaps= 0 total=6957 Number of alignments=560 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I99 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)S105 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 1 :GS 1vk4A -6 :IH T0375 4 :ILCVGLVVLDVISL 1vk4A 2 :ITFIGHVSKDVNVV T0375 19 :DK 1vk4A 16 :DG T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPG 1vk4A 18 :KREIAYGGGVVMGAITSSLLGVKTKVITKCTRE T0375 74 :LRRYSVDLRYTVF 1vk4A 58 :LRDNGVEVVFLKS T0375 90 :GSVPIATVI 1vk4A 71 :PRTTSIENR T0375 106 :RTILYY 1vk4A 87 :RESFLI T0375 113 :RSLPDVSATDFEKV 1vk4A 93 :SAADPFTESDLAFI T0375 130 :QFKWIHIEGRN 1vk4A 107 :EGEAVHINPLW T0375 141 :A 1vk4A 122 :P T0375 142 :SEQVKMLQR 1vk4A 124 :DLIPVLRRK T0375 156 :T 1vk4A 133 :V T0375 157 :RQPPEQ 1vk4A 135 :FLSADA T0375 163 :KIRVSVEVEKPRE 1vk4A 149 :NEKLVYRDWEMKE T0375 179 :QLFGYGDVVFVSKDVAKHL 1vk4A 162 :KYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEALRGLYGR 1vk4A 182 :GTNDLRESCRIIRSF T0375 216 :GA 1vk4A 197 :GA T0375 218 :VLVCAW 1vk4A 200 :IILATH T0375 225 :EEGADALGPD 1vk4A 206 :ASGVIVFDGN T0375 237 :LLHSDAF 1vk4A 216 :FYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFVF T0375 269 :GRSVQEALRFGCQVAGKKCGLQGF 1vk4A 248 :KMSIEKATKFAAAVTSVKMRHPGP T0375 293 :DGIV 1vk4A 277 :LEAI Number of specific fragments extracted= 23 number of extra gaps= 0 total=6980 Number of alignments=561 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I99 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 4 :ILCVGLVVLDVISL 1vk4A 2 :ITFIGHVSKDVNVV T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFV 1vk4A 16 :DGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSKFS T0375 73 :DLRRYSVD 1vk4A 57 :FLRDNGVE T0375 84 :TVFQTTGSVPIATVI 1vk4A 65 :VVFLKSPRTTSIENR T0375 107 :TILYYDRSLPDVSATDFEKV 1vk4A 87 :RESFLISAADPFTESDLAFI T0375 130 :QFKWIHIEGRNA 1vk4A 107 :EGEAVHINPLWY T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 1vk4A 120 :EFPEDLIPVLRRKVMFLSADA T0375 163 :KIRVSVEVEKPREEL 1vk4A 149 :NEKLVYRDWEMKEKY T0375 181 :FGYGDVVFVSKDVAKHL 1vk4A 164 :LKYLDLFKVDSREAETL T0375 198 :GFQSAEEALRGLYGR 1vk4A 182 :GTNDLRESCRIIRSF T0375 216 :GAVLVCAWAEEGADALGPD 1vk4A 197 :GAKIILATHASGVIVFDGN T0375 237 :LLHSDAF 1vk4A 216 :FYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLS 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFV T0375 268 :QGRSVQEALRFGCQVAGKKCGLQGF 1vk4A 247 :KKMSIEKATKFAAAVTSVKMRHPGP Number of specific fragments extracted= 14 number of extra gaps= 0 total=6994 Number of alignments=562 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I99 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 4 :ILCVGLVVLDVISL 1vk4A 2 :ITFIGHVSKDVNVV T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADF 1vk4A 16 :DGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSKF T0375 72 :DDLRRYSVDL 1vk4A 56 :SFLRDNGVEV T0375 85 :VFQTTGSVPIATVI 1vk4A 66 :VFLKSPRTTSIENR T0375 107 :TILYYDRSLPDVSATDFEKV 1vk4A 87 :RESFLISAADPFTESDLAFI T0375 130 :QFKWIHIEGRNA 1vk4A 107 :EGEAVHINPLWY T0375 142 :SEQVKMLQRIDAHNTRQPPEQ 1vk4A 120 :EFPEDLIPVLRRKVMFLSADA T0375 163 :KIRVSVEVEKPRE 1vk4A 149 :NEKLVYRDWEMKE T0375 179 :QLFGYGDVVFVSKDVAKHL 1vk4A 162 :KYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEA 1vk4A 182 :GTNDLRES T0375 209 :LYGRVRKGAVLVCAWAEEGADALGPD 1vk4A 190 :CRIIRSFGAKIILATHASGVIVFDGN T0375 237 :LLHSDAF 1vk4A 216 :FYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLS 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFV T0375 268 :QGRSVQEALRFGCQVAGKKCGLQGFD 1vk4A 247 :KKMSIEKATKFAAAVTSVKMRHPGPL Number of specific fragments extracted= 14 number of extra gaps= 0 total=7008 Number of alignments=563 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I98 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)R106 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 2 :SQILCVGLVVLDVISL 1vk4A 0 :HMITFIGHVSKDVNVV T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVAD 1vk4A 16 :DGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSK T0375 72 :DDLRRYSVDLRYTVF 1vk4A 56 :SFLRDNGVEVVFLKS T0375 89 :TGSVPIATV 1vk4A 71 :PRTTSIENR T0375 107 :TILYYDRSLPDVSATDFEKV 1vk4A 87 :RESFLISAADPFTESDLAFI T0375 130 :QFKWIHIEGRNAS 1vk4A 107 :EGEAVHINPLWYG T0375 143 :EQV 1vk4A 125 :LIP T0375 150 :RIDAHNTRQPPEQ 1vk4A 128 :VLRRKVMFLSADA T0375 163 :KIRVSVEVEKPRE 1vk4A 149 :NEKLVYRDWEMKE T0375 179 :QLFGYGDVVFVSKDVAKHL 1vk4A 162 :KYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEA 1vk4A 182 :GTNDLRES T0375 209 :LYGRVRKGA 1vk4A 190 :CRIIRSFGA T0375 218 :VLVCA 1vk4A 200 :IILAT T0375 224 :AEEGADALGPD 1vk4A 205 :HASGVIVFDGN T0375 237 :LLHSDAF 1vk4A 216 :FYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFVF T0375 269 :GRSVQEALRFGCQVAGKKCGLQGFD 1vk4A 248 :KMSIEKATKFAAAVTSVKMRHPGPL Number of specific fragments extracted= 17 number of extra gaps= 0 total=7025 Number of alignments=564 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I99 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)S105 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 2 :SQILCVGLVVLDVISL 1vk4A 0 :HMITFIGHVSKDVNVV T0375 19 :DK 1vk4A 16 :DG T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPG 1vk4A 18 :KREIAYGGGVVMGAITSSLLGVKTKVITKCTRE T0375 74 :LRRYSVDLRYTVF 1vk4A 58 :LRDNGVEVVFLKS T0375 90 :GSVPIATVI 1vk4A 71 :PRTTSIENR T0375 106 :RTILYY 1vk4A 87 :RESFLI T0375 113 :RSLPDVSATDFEKV 1vk4A 93 :SAADPFTESDLAFI T0375 130 :QFKWIHIEGRN 1vk4A 107 :EGEAVHINPLW T0375 141 :A 1vk4A 122 :P T0375 142 :SEQVKMLQR 1vk4A 124 :DLIPVLRRK T0375 156 :T 1vk4A 133 :V T0375 157 :RQPPEQ 1vk4A 135 :FLSADA T0375 163 :KIRVSVEVEKPRE 1vk4A 149 :NEKLVYRDWEMKE T0375 179 :QLFGYGDVVFVSKDVAKHL 1vk4A 162 :KYLKYLDLFKVDSREAETL T0375 198 :GFQSAEEALRGLYGR 1vk4A 182 :GTNDLRESCRIIRSF T0375 216 :GA 1vk4A 197 :GA T0375 218 :VLVCAW 1vk4A 200 :IILATH T0375 225 :EEGADALGPD 1vk4A 206 :ASGVIVFDGN T0375 237 :LLHSDAF 1vk4A 216 :FYEASFR T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1vk4A 223 :SWSLEGRTGRGDTCTAAFLVGFVF T0375 269 :GRSVQEALRFGCQVAGKKCGLQGF 1vk4A 248 :KMSIEKATKFAAAVTSVKMRHPGP Number of specific fragments extracted= 21 number of extra gaps= 0 total=7046 Number of alignments=565 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I4 because first residue in template chain is (1vk4A)I-6 Warning: unaligning (T0375)Y110 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)P116 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 5 :LCVGLVVLDVISLVDK 1vk4A -5 :HHHHHHMITFIGHVSK T0375 25 :DSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADF 1vk4A 11 :DVNVVDGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSKF T0375 72 :DDLRRYSVDLRYTVF 1vk4A 56 :SFLRDNGVEVVFLKS T0375 101 :EASGSRTIL 1vk4A 71 :PRTTSIENR T0375 117 :DVSATDFEKVDLTQFKWIHIEGRNASE 1vk4A 87 :RESFLISAADPFTESDLAFIEGEAVHI T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1vk4A 120 :EFPEDLIPVLRRKVMFLSADAQGFVRVP T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEA 1vk4A 155 :RDWEMKEKYLKYLDLFKVDSREAETLTGTNDLRE T0375 207 :RGLYGRVRKGAVLVCAW 1vk4A 189 :SCRIIRSFGAKIILATH T0375 225 :EEGADALGPDG 1vk4A 206 :ASGVIVFDGNF T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSL 1vk4A 217 :YEASFRSWSLEGRTGRGDTCTAAFLVGF T0375 267 :SQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1vk4A 246 :FKKMSIEKATKFAAAVTSVKMRHPGPLRRE Number of specific fragments extracted= 11 number of extra gaps= 0 total=7057 Number of alignments=566 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I99 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)S105 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 4 :ILCVGLVVLDVISL 1vk4A 2 :ITFIGHVSKDVNVV T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADF 1vk4A 16 :DGKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSKF T0375 72 :DDLRRYSVDLRYTVF 1vk4A 56 :SFLRDNGVEVVFLKS T0375 90 :GSVPIATVI 1vk4A 71 :PRTTSIENR T0375 106 :RTILYYDRSLPDVSAT 1vk4A 87 :RESFLISAADPFTESD T0375 126 :VDLTQFKWIHIEGRN 1vk4A 103 :LAFIEGEAVHINPLW T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1vk4A 120 :EFPEDLIPVLRRKVMFLSADAQGF T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQSAEEA 1vk4A 157 :WEMKEKYLKYLDLFKVDSREAETLTGTNDLRE T0375 207 :RGLYGRVRKGAVLVCAW 1vk4A 189 :SCRIIRSFGAKIILATH T0375 225 :EEGADALGPDG 1vk4A 206 :ASGVIVFDGNF T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSL 1vk4A 217 :YEASFRSWSLEGRTGRGDTCTAAFLVGF T0375 267 :SQGRSVQEALRFGCQVAGKKCGLQGFDGI 1vk4A 246 :FKKMSIEKATKFAAAVTSVKMRHPGPLRR Number of specific fragments extracted= 12 number of extra gaps= 0 total=7069 Number of alignments=567 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)S103 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 2 :SQILCVGLVVLDVISLVD 1vk4A 0 :HMITFIGHVSKDVNVVDG T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 1vk4A 18 :KREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVS T0375 72 :DDLRRYSVDLRYTVF 1vk4A 56 :SFLRDNGVEVVFLKS T0375 89 :TGSVPIATV 1vk4A 71 :PRTTSIENR T0375 104 :GSRTILYYDR 1vk4A 87 :RESFLISAAD T0375 116 :PD 1vk4A 97 :PF T0375 122 :DFEKVDLTQFKWIHIEGRNASE 1vk4A 99 :TESDLAFIEGEAVHINPLWYGE T0375 144 :QVKML 1vk4A 124 :DLIPV T0375 153 :AHNTRQPPEQKIRVS 1vk4A 129 :LRRKVMFLSADAQGF T0375 171 :E 1vk4A 144 :V T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEA 1vk4A 155 :RDWEMKEKYLKYLDLFKVDSREAETLTGTNDLRE T0375 207 :RGLYGRVRKGAVLVCAW 1vk4A 189 :SCRIIRSFGAKIILATH T0375 225 :EEGADALGPD 1vk4A 206 :ASGVIVFDGN T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1vk4A 216 :FYEASFRSWSLEGRTGRGDTCTAAFLVGFVF T0375 269 :GRSVQEALRFGCQVAGKKCGLQGF 1vk4A 248 :KMSIEKATKFAAAVTSVKMRHPGP Number of specific fragments extracted= 15 number of extra gaps= 0 total=7084 Number of alignments=568 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)S103 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 2 :SQILCVGLVVLDVISL 1vk4A 0 :HMITFIGHVSKDVNVV T0375 24 :ED 1vk4A 16 :DG T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGH 1vk4A 18 :KREIAYGGGVVMGAITSSLLGVKTKVITKCTRED T0375 74 :LRRYSVDLRYTVF 1vk4A 58 :LRDNGVEVVFLKS T0375 90 :GSVPIATVI 1vk4A 71 :PRTTSIENR T0375 104 :GSRTILYYD 1vk4A 87 :RESFLISAA T0375 116 :PDVSATDFEKV 1vk4A 96 :DPFTESDLAFI T0375 130 :QFKWIHIEGRNASE 1vk4A 107 :EGEAVHINPLWYGE T0375 144 :QVKMLQRIDA 1vk4A 124 :DLIPVLRRKV T0375 158 :QPPEQKIRVS 1vk4A 134 :MFLSADAQGF T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEA 1vk4A 155 :RDWEMKEKYLKYLDLFKVDSREAETLTGTNDLRE T0375 207 :RGLYGRVRKGAVLVCAW 1vk4A 189 :SCRIIRSFGAKIILATH T0375 225 :EEGADALGPD 1vk4A 206 :ASGVIVFDGN T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1vk4A 216 :FYEASFRSWSLEGRTGRGDTCTAAFLVGFVF T0375 269 :GRSVQEALRFGCQVAGKKCGLQGF 1vk4A 248 :KMSIEKATKFAAAVTSVKMRHPGP Number of specific fragments extracted= 15 number of extra gaps= 0 total=7099 Number of alignments=569 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)Y110 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)P116 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 4 :ILCVGLVVLDVISLVDK 1vk4A 2 :ITFIGHVSKDVNVVDGK T0375 33 :QRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADF 1vk4A 19 :REIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSKF T0375 72 :DDLRRYSVDLRYTVF 1vk4A 56 :SFLRDNGVEVVFLKS T0375 101 :EASGSRTIL 1vk4A 71 :PRTTSIENR T0375 117 :DVSATDFEKVDLTQFKWIHIEGRNASE 1vk4A 87 :RESFLISAADPFTESDLAFIEGEAVHI T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1vk4A 120 :EFPEDLIPVLRRKVMFLSADAQGFVRVP T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEA 1vk4A 155 :RDWEMKEKYLKYLDLFKVDSREAETLTGTNDLRE T0375 207 :RGLYGRVRKGAVLVCAW 1vk4A 189 :SCRIIRSFGAKIILATH T0375 225 :EEGADALGPDG 1vk4A 206 :ASGVIVFDGNF T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSL 1vk4A 217 :YEASFRSWSLEGRTGRGDTCTAAFLVGF T0375 267 :SQGRSVQEALRFGCQVAGKKCGLQGF 1vk4A 246 :FKKMSIEKATKFAAAVTSVKMRHPGP Number of specific fragments extracted= 11 number of extra gaps= 0 total=7110 Number of alignments=570 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)I99 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vk4A)T86 Warning: unaligning (T0375)S105 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 4 :ILCVGLVVLDVISLV 1vk4A 2 :ITFIGHVSKDVNVVD T0375 31 :LSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADF 1vk4A 17 :GKREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSKF T0375 72 :DDLRRYSVDLRYTVF 1vk4A 56 :SFLRDNGVEVVFLKS T0375 90 :GSVPIATVI 1vk4A 71 :PRTTSIENR T0375 106 :RTILYYDRSLPDVSAT 1vk4A 87 :RESFLISAADPFTESD T0375 126 :VDLTQFKWIHIEGRN 1vk4A 103 :LAFIEGEAVHINPLW T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1vk4A 120 :EFPEDLIPVLRRKVMFLSADAQGF T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQSAEEA 1vk4A 157 :WEMKEKYLKYLDLFKVDSREAETLTGTNDLRE T0375 207 :RGLYGRVRKGAVLVCAW 1vk4A 189 :SCRIIRSFGAKIILATH T0375 225 :EEGADALGPDG 1vk4A 206 :ASGVIVFDGNF T0375 239 :HSDAFPPPRVVDTLGAGDTFNASVIFSL 1vk4A 217 :YEASFRSWSLEGRTGRGDTCTAAFLVGF T0375 267 :SQGRSVQEALRFGCQVAGKKCGLQGF 1vk4A 246 :FKKMSIEKATKFAAAVTSVKMRHPGP Number of specific fragments extracted= 12 number of extra gaps= 0 total=7122 Number of alignments=571 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)S103 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 3 :QILCVGLVVLDVISLVD 1vk4A 1 :MITFIGHVSKDVNVVDG T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 1vk4A 18 :KREIAYGGGVVMGAITSSLLGVKTKVITKCTREDVS T0375 72 :DDLRRYSVDLRYTVF 1vk4A 56 :SFLRDNGVEVVFLKS T0375 89 :TGSVPIATV 1vk4A 71 :PRTTSIENR T0375 104 :GSRTILYYDR 1vk4A 87 :RESFLISAAD T0375 116 :PD 1vk4A 97 :PF T0375 122 :DFEKVDLTQFKWIHIEGRNASE 1vk4A 99 :TESDLAFIEGEAVHINPLWYGE T0375 144 :QVKML 1vk4A 124 :DLIPV T0375 153 :AHNTRQPPEQKIRVS 1vk4A 129 :LRRKVMFLSADAQGF T0375 171 :E 1vk4A 144 :V T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEA 1vk4A 155 :RDWEMKEKYLKYLDLFKVDSREAETLTGTNDLRE T0375 207 :RGLYGRVRKGAVLVCAW 1vk4A 189 :SCRIIRSFGAKIILATH T0375 225 :EEGADALGPD 1vk4A 206 :ASGVIVFDGN T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1vk4A 216 :FYEASFRSWSLEGRTGRGDTCTAAFLVGFVF T0375 269 :GRSVQEALRFGCQVAGKKCGLQGF 1vk4A 248 :KMSIEKATKFAAAVTSVKMRHPGP Number of specific fragments extracted= 15 number of extra gaps= 0 total=7137 Number of alignments=572 # 1vk4A read from 1vk4A/merged-a2m # found chain 1vk4A in template set Warning: unaligning (T0375)S103 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vk4A)T86 T0375 2 :SQILCVGLVVLDVISL 1vk4A 0 :HMITFIGHVSKDVNVV T0375 24 :ED 1vk4A 16 :DG T0375 32 :SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGH 1vk4A 18 :KREIAYGGGVVMGAITSSLLGVKTKVITKCTRED T0375 74 :LRRYSVDLRYTVF 1vk4A 58 :LRDNGVEVVFLKS T0375 90 :GSVPIATVI 1vk4A 71 :PRTTSIENR T0375 104 :GSRTILYYD 1vk4A 87 :RESFLISAA T0375 116 :PDVSATDFEKV 1vk4A 96 :DPFTESDLAFI T0375 130 :QFKWIHIEGRNASE 1vk4A 107 :EGEAVHINPLWYGE T0375 144 :QVKMLQRIDA 1vk4A 124 :DLIPVLRRKV T0375 158 :QPPEQKIRVS 1vk4A 134 :MFLSADAQGF T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEA 1vk4A 155 :RDWEMKEKYLKYLDLFKVDSREAETLTGTNDLRE T0375 207 :RGLYGRVRKGAVLVCAW 1vk4A 189 :SCRIIRSFGAKIILATH T0375 225 :EEGADALGPD 1vk4A 206 :ASGVIVFDGN T0375 238 :LHSDAFPPPRVVDTLGAGDTFNASVIFSLSQ 1vk4A 216 :FYEASFRSWSLEGRTGRGDTCTAAFLVGFVF T0375 269 :GRSVQEALRFGCQVAGKKCGLQGF 1vk4A 248 :KMSIEKATKFAAAVTSVKMRHPGP Number of specific fragments extracted= 15 number of extra gaps= 0 total=7152 Number of alignments=573 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qwgA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0375 read from 1qwgA/merged-a2m # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)L12 because first residue in template chain is (1qwgA)M1 Warning: unaligning (T0375)A153 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)R165 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 Warning: unaligning (T0375)Q290 because last residue in template chain is (1qwgA)V251 T0375 13 :DVISLVDK 1qwgA 2 :KAFEFLYE T0375 22 :PKEDSEIRCLSQ 1qwgA 10 :DFQRGLTVVLDK T0375 41 :ASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDL 1qwgA 22 :GLPPKFVEDYLKVCGDYIDFVKFGWGTSAVIDRD T0375 75 :RRYSVDLRYTVFQTTGSVPIATVIINEA 1qwgA 59 :EKINYYKDWGIKVYPGGTLFEYAYSKGK T0375 111 :YDRSLPDVSATDFEKVDLTQ 1qwgA 87 :FDEFLNECEKLGFEAVEISD T0375 132 :KWIHIEGRNASEQVKMLQRID 1qwgA 107 :GSSDISLEERNNAIKRAKDNG T0375 166 :VSVEVEKPREELFQ 1qwgA 130 :VLTEVGKKMPDKDK T0375 199 :FQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTF 1qwgA 144 :QLTIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVI T0375 259 :NASVIFSLSQGRSVQ 1qwgA 210 :SQQVAFILKFGSSVN T0375 274 :EALRFGC 1qwgA 237 :ETLRRGL T0375 283 :AGKKCGL 1qwgA 244 :RGDTFGK Number of specific fragments extracted= 11 number of extra gaps= 1 total=7163 Number of alignments=574 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)A153 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)R165 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 Warning: unaligning (T0375)Q290 because last residue in template chain is (1qwgA)V251 T0375 13 :DVISLVDK 1qwgA 2 :KAFEFLYE T0375 22 :PKEDSEIRCLSQ 1qwgA 10 :DFQRGLTVVLDK T0375 41 :ASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDL 1qwgA 22 :GLPPKFVEDYLKVCGDYIDFVKFGWGTSAVIDRD T0375 75 :RRYSVDLRYTVFQTTGSVPIATVIINEA 1qwgA 59 :EKINYYKDWGIKVYPGGTLFEYAYSKGK T0375 111 :YDRSLPDVSATDFEKVDLTQ 1qwgA 87 :FDEFLNECEKLGFEAVEISD T0375 132 :KWIHIEGRNASEQVKMLQRID 1qwgA 107 :GSSDISLEERNNAIKRAKDNG T0375 166 :VSVEVEKPREELFQ 1qwgA 130 :VLTEVGKKMPDKDK T0375 199 :FQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLG 1qwgA 144 :QLTIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVD T0375 259 :NASVIFSLSQGRSVQ 1qwgA 199 :INKVIFEAPQKSQQV T0375 274 :EALRFGC 1qwgA 237 :ETLRRGL T0375 283 :AGKKCGL 1qwgA 244 :RGDTFGK Number of specific fragments extracted= 11 number of extra gaps= 1 total=7174 Number of alignments=575 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set T0375 194 :AKHLGFQSAE 1qwgA 94 :CEKLGFEAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7175 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set T0375 192 :DVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEE 1qwgA 137 :KMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGRE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7176 Number of alignments=576 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)L12 because first residue in template chain is (1qwgA)M1 Warning: unaligning (T0375)A153 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)H154 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 Warning: unaligning (T0375)Q290 because last residue in template chain is (1qwgA)V251 T0375 13 :DVISLVDK 1qwgA 2 :KAFEFLYE T0375 22 :PKEDSEIRCLSQRW 1qwgA 10 :DFQRGLTVVLDKGL T0375 43 :NSCTILSLLGAPCAFMGSMAPGHVADFVLDD 1qwgA 24 :PPKFVEDYLKVCGDYIDFVKFGWGTSAVIDR T0375 74 :LRRYSVDLRYTVFQTTGSVPIATVIINEA 1qwgA 58 :KEKINYYKDWGIKVYPGGTLFEYAYSKGK T0375 111 :YDRSLPDVSATDFEKVDLTQ 1qwgA 87 :FDEFLNECEKLGFEAVEISD T0375 132 :KWIHIEGRNASEQVKMLQRID 1qwgA 107 :GSSDISLEERNNAIKRAKDNG T0375 155 :NTRQPPEQKIRVSVEVE 1qwgA 130 :VLTEVGKKMPDKDKQLT T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTF 1qwgA 147 :IDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVI T0375 259 :NASVIFSLSQGRSVQ 1qwgA 210 :SQQVAFILKFGSSVN T0375 274 :EALRFG 1qwgA 237 :ETLRRG T0375 282 :VAGKKCGL 1qwgA 243 :LRGDTFGK Number of specific fragments extracted= 11 number of extra gaps= 1 total=7187 Number of alignments=577 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)L12 because first residue in template chain is (1qwgA)M1 Warning: unaligning (T0375)A153 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)H154 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 Warning: unaligning (T0375)Q290 because last residue in template chain is (1qwgA)V251 T0375 13 :DVISLVDK 1qwgA 2 :KAFEFLYE T0375 22 :PKEDSEIRCLSQRW 1qwgA 10 :DFQRGLTVVLDKGL T0375 43 :NSCTILSLLGAPCAFMGSMAPGHVADFVLDD 1qwgA 24 :PPKFVEDYLKVCGDYIDFVKFGWGTSAVIDR T0375 74 :LRRYSVDLRYTVFQTTGSVPIATVIINEA 1qwgA 58 :KEKINYYKDWGIKVYPGGTLFEYAYSKGK T0375 111 :YDRSLPDVSATDFEKVDLTQ 1qwgA 87 :FDEFLNECEKLGFEAVEISD T0375 132 :KWIHIEGRNASEQVKMLQRID 1qwgA 107 :GSSDISLEERNNAIKRAKDNG T0375 155 :NTRQPPEQKIRVS 1qwgA 130 :VLTEVGKKMPDKD T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTF 1qwgA 147 :IDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVI T0375 259 :NASVIFSLSQGRSVQ 1qwgA 210 :SQQVAFILKFGSSVN T0375 274 :EALRFGC 1qwgA 237 :ETLRRGL T0375 283 :AGKKCGL 1qwgA 244 :RGDTFGK Number of specific fragments extracted= 11 number of extra gaps= 1 total=7198 Number of alignments=578 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set T0375 177 :LFQLFGYGDVVFVSKDVAKHLGFQSAE 1qwgA 77 :LFEYAYSKGKFDEFLNECEKLGFEAVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=7199 Number of alignments=579 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEG 1qwgA 147 :IDDRIKLINFDLDAGADYVIIEGRES Number of specific fragments extracted= 1 number of extra gaps= 0 total=7200 Number of alignments=580 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)T156 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)R157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 1 :GSQILCVGLVVLDVISLVDKYP 1qwgA 2 :KAFEFLYEDFQRGLTVVLDKGL T0375 43 :NSCTILSLLGAPCAFMGSMAPGHVADFVLDD 1qwgA 24 :PPKFVEDYLKVCGDYIDFVKFGWGTSAVIDR T0375 74 :LRRYSVDLRYTVFQTTGSVPIATVIINEA 1qwgA 58 :KEKINYYKDWGIKVYPGGTLFEYAYSKGK T0375 111 :YDRSLPDVSATDFEKVDLTQFKW 1qwgA 87 :FDEFLNECEKLGFEAVEISDGSS T0375 138 :GRNASEQVKMLQRIDAHN 1qwgA 110 :DISLEERNNAIKRAKDNG T0375 158 :QPPEQKIRVSVEV 1qwgA 130 :VLTEVGKKMPDKD T0375 198 :GFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLG 1qwgA 143 :KQLTIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVD T0375 259 :NASVIFSLSQGR 1qwgA 199 :INKVIFEAPQKS T0375 275 :ALRFGCQVAGKKCGLQGFD 1qwgA 211 :QQVAFILKFGSSVNLANIA T0375 294 :GIV 1qwgA 249 :GKV Number of specific fragments extracted= 10 number of extra gaps= 1 total=7210 Number of alignments=581 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)T156 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)R157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 1 :GSQI 1qwgA 1 :MKAF T0375 5 :LCVGLVVLDVISLVDKYP 1qwgA 6 :FLYEDFQRGLTVVLDKGL T0375 43 :NSCTILSLLGAPCAFMGSMAPGHVADFVL 1qwgA 24 :PPKFVEDYLKVCGDYIDFVKFGWGTSAVI T0375 72 :DDLRRY 1qwgA 59 :EKINYY T0375 81 :LRYTVFQTTGSVPIATVIINEA 1qwgA 65 :KDWGIKVYPGGTLFEYAYSKGK T0375 111 :YDRSLPDVSATDFEKVDLTQFKW 1qwgA 87 :FDEFLNECEKLGFEAVEISDGSS T0375 138 :GRNASEQVKMLQRIDAHN 1qwgA 110 :DISLEERNNAIKRAKDNG T0375 158 :QPPE 1qwgA 130 :VLTE T0375 198 :GFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLG 1qwgA 143 :KQLTIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVD T0375 259 :NASVIFSLSQGRSVQEAL 1qwgA 199 :INKVIFEAPQKSQQVAFI T0375 277 :RFGCQV 1qwgA 218 :KFGSSV T0375 283 :AGKKCGLQGF 1qwgA 237 :ETLRRGLRGD T0375 293 :DGIV 1qwgA 248 :FGKV Number of specific fragments extracted= 13 number of extra gaps= 1 total=7223 Number of alignments=582 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)Y183 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)G184 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 176 :ELFQLFG 1qwgA 121 :KRAKDNG T0375 185 :DVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLG 1qwgA 130 :VLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=7225 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)Y183 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)G184 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 182 :G 1qwgA 127 :G T0375 185 :DVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLG 1qwgA 130 :VLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVD Number of specific fragments extracted= 2 number of extra gaps= 1 total=7227 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set T0375 178 :FQLFGYGDVVFVSKDVAK 1qwgA 41 :FVKFGWGTSAVIDRDVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7228 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set T0375 181 :FGYGDVVFVSKDVAK 1qwgA 44 :FGWGTSAVIDRDVVK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7229 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)S2 because first residue in template chain is (1qwgA)M1 Warning: unaligning (T0375)T156 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)R157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 44 :SCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYS 1qwgA 2 :KAFEFLYEDFQRGLTVVLDKGLPPKFVEDYLKVCG T0375 82 :RYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLT 1qwgA 37 :DYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSK T0375 130 :QFKWIHIEGRNASEQ 1qwgA 86 :KFDEFLNECEKLGFE T0375 145 :VKMLQRIDAHN 1qwgA 117 :NNAIKRAKDNG T0375 158 :QPPEQK 1qwgA 130 :VLTEVG T0375 171 :EKPREELFQLF 1qwgA 136 :KKMPDKDKQLT T0375 200 :QSAEEALRGLYGRV 1qwgA 148 :DDRIKLINFDLDAG T0375 216 :GAVLVCAWAE 1qwgA 162 :ADYVIIEGRE T0375 226 :EGADALGPDGK 1qwgA 174 :KGKGLFDKEGK T0375 244 :PPPRVVDT 1qwgA 185 :VKENELDV T0375 266 :LSQGRSVQEALRFGCQVAGKKCGL 1qwgA 193 :LAKNVDINKVIFEAPQKSQQVAFI T0375 290 :QGFD 1qwgA 219 :FGSS T0375 294 :GI 1qwgA 224 :NL Number of specific fragments extracted= 13 number of extra gaps= 1 total=7242 Number of alignments=583 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)S2 because first residue in template chain is (1qwgA)M1 Warning: unaligning (T0375)T156 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)R157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 3 :QIL 1qwgA 2 :KAF T0375 47 :ILSLLGAPCAFMGSMAPGHVADFVLDDLRRYS 1qwgA 5 :EFLYEDFQRGLTVVLDKGLPPKFVEDYLKVCG T0375 82 :RYTVFQTTGSVPIATVIIN 1qwgA 37 :DYIDFVKFGWGTSAVIDRD T0375 101 :EASGSRTILYYDR 1qwgA 62 :NYYKDWGIKVYPG T0375 114 :SLPDVSATDFEKVDLT 1qwgA 81 :AYSKGKFDEFLNECEK T0375 130 :QFKWIHIEGRNASEQ 1qwgA 98 :GFEAVEISDGSSDIS T0375 145 :VKMLQRIDAHN 1qwgA 117 :NNAIKRAKDNG T0375 158 :QPPEQK 1qwgA 130 :VLTEVG T0375 171 :EKPREELFQL 1qwgA 136 :KKMPDKDKQL T0375 198 :GFQSAEEALRGLYGRV 1qwgA 146 :TIDDRIKLINFDLDAG T0375 216 :GAVLVCAWAE 1qwgA 162 :ADYVIIEGRE T0375 226 :EGADALGPDGKLLHSDAFPPPRVVDT 1qwgA 174 :KGKGLFDKEGKVKENELDVLAKNVDI T0375 270 :RSVQEALRFGCQVAGKKCGL 1qwgA 217 :LKFGSSVNLANIAFDEVISL T0375 290 :QGFDGI 1qwgA 241 :RGLRGD Number of specific fragments extracted= 14 number of extra gaps= 1 total=7256 Number of alignments=584 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)S2 because first residue in template chain is (1qwgA)M1 T0375 23 :KEDSEI 1qwgA 2 :KAFEFL T0375 87 :QTTG 1qwgA 8 :YEDF T0375 103 :SGSRTILYYDR 1qwgA 12 :QRGLTVVLDKG T0375 118 :VSATDFE 1qwgA 23 :LPPKFVE T0375 125 :KVDLTQFKWIHIEGRNASEQ 1qwgA 33 :KVCGDYIDFVKFGWGTSAVI T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLF 1qwgA 58 :KEKINYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNEC T0375 183 :YGDVVFVS 1qwgA 98 :GFEAVEIS T0375 200 :QSAEEALRGLYGRV 1qwgA 148 :DDRIKLINFDLDAG T0375 216 :GAVLVCAWAE 1qwgA 162 :ADYVIIEGRE T0375 226 :EGADALGPDGKLL 1qwgA 174 :KGKGLFDKEGKVK T0375 263 :IFSLSQG 1qwgA 190 :LDVLAKN T0375 282 :VAGKKCGLQGFD 1qwgA 236 :LETLRRGLRGDT T0375 294 :GIV 1qwgA 249 :GKV Number of specific fragments extracted= 13 number of extra gaps= 0 total=7269 Number of alignments=585 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)S2 because first residue in template chain is (1qwgA)M1 Warning: unaligning (T0375)F199 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 T0375 22 :PKEDSE 1qwgA 2 :KAFEFL T0375 87 :QTTGSVPIATVIINE 1qwgA 8 :YEDFQRGLTVVLDKG T0375 118 :VSATDFE 1qwgA 23 :LPPKFVE T0375 125 :KVDLTQFKWIHIEG 1qwgA 33 :KVCGDYIDFVKFGW T0375 139 :RNASEQVKMLQRIDAHNTRQPPEQKIRVSVEV 1qwgA 52 :IDRDVVKEKINYYKDWGIKVYPGGTLFEYAYS T0375 171 :EKPREELFQL 1qwgA 88 :DEFLNECEKL T0375 183 :YGDVVFV 1qwgA 98 :GFEAVEI T0375 190 :SKDVAKH 1qwgA 112 :SLEERNN T0375 197 :LG 1qwgA 126 :NG T0375 200 :QSAEEALRGLYGRV 1qwgA 148 :DDRIKLINFDLDAG T0375 216 :GAVLVCAWAEEG 1qwgA 162 :ADYVIIEGRESG T0375 228 :ADALGPDGKLL 1qwgA 176 :KGLFDKEGKVK T0375 241 :DAFPPPRVVDT 1qwgA 195 :KNVDINKVIFE T0375 253 :GAGDTFNASVIFSLSQGRS 1qwgA 206 :APQKSQQVAFILKFGSSVN T0375 272 :VQEALR 1qwgA 233 :VISLET T0375 285 :KKCGLQGFD 1qwgA 239 :LRRGLRGDT T0375 294 :GIV 1qwgA 249 :GKV Number of specific fragments extracted= 17 number of extra gaps= 1 total=7286 Number of alignments=586 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set T0375 98 :IINEASGSRTILYYDRSLPDVSATDFEKVD 1qwgA 7 :LYEDFQRGLTVVLDKGLPPKFVEDYLKVCG T0375 129 :TQFKWIHIEGRNASEQ 1qwgA 37 :DYIDFVKFGWGTSAVI T0375 145 :VKMLQRIDAHNTRQPPEQ 1qwgA 58 :KEKINYYKDWGIKVYPGG T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1qwgA 76 :TLFEYAYSKGKFDEFLNECEKLGFEAVEISDG T0375 198 :GF 1qwgA 109 :SD T0375 200 :QSAEEALRGLYGRV 1qwgA 148 :DDRIKLINFDLDAG T0375 216 :GAVLVCAWAE 1qwgA 162 :ADYVIIEGRE T0375 226 :EGADALGPDGKLLHSDAFPPPRVVDTL 1qwgA 174 :KGKGLFDKEGKVKENELDVLAKNVDIN Number of specific fragments extracted= 8 number of extra gaps= 0 total=7294 Number of alignments=587 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set T0375 99 :INEASGSRTILYYDRSLPDVSATDFE 1qwgA 8 :YEDFQRGLTVVLDKGLPPKFVEDYLK T0375 126 :VDLTQFKWIHIEGRNASEQ 1qwgA 34 :VCGDYIDFVKFGWGTSAVI T0375 145 :VKMLQRIDAHNTRQPPEQ 1qwgA 58 :KEKINYYKDWGIKVYPGG T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1qwgA 76 :TLFEYAYSKGKFDEFLNECEKLGFEAVEISDG T0375 200 :QSAEEALRGLYGRV 1qwgA 148 :DDRIKLINFDLDAG T0375 216 :GAVLVCAWAE 1qwgA 162 :ADYVIIEGRE T0375 226 :EGADALGPDGKLLHSDA 1qwgA 174 :KGKGLFDKEGKVKENEL Number of specific fragments extracted= 7 number of extra gaps= 0 total=7301 Number of alignments=588 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set T0375 101 :EASGSRTILYYDRSL 1qwgA 10 :DFQRGLTVVLDKGLP T0375 120 :ATDFE 1qwgA 25 :PKFVE T0375 125 :KVDLTQFKWIHIEGRNASEQ 1qwgA 33 :KVCGDYIDFVKFGWGTSAVI T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLF 1qwgA 58 :KEKINYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNEC T0375 183 :YGDVVFVS 1qwgA 98 :GFEAVEIS T0375 200 :QSAEEALRGLYGRV 1qwgA 148 :DDRIKLINFDLDAG T0375 216 :GAVLVCAWAE 1qwgA 162 :ADYVIIEGRE T0375 226 :EGADALGPDGKL 1qwgA 174 :KGKGLFDKEGKV Number of specific fragments extracted= 8 number of extra gaps= 0 total=7309 Number of alignments=589 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)F199 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 T0375 88 :TTGSVPIATVIINE 1qwgA 9 :EDFQRGLTVVLDKG T0375 118 :VSATDFE 1qwgA 23 :LPPKFVE T0375 125 :KVDLTQFKWIHIEG 1qwgA 33 :KVCGDYIDFVKFGW T0375 139 :RNASEQVKMLQRIDAHNTRQPPEQKIRVSVEV 1qwgA 52 :IDRDVVKEKINYYKDWGIKVYPGGTLFEYAYS T0375 171 :EKPREELFQL 1qwgA 88 :DEFLNECEKL T0375 183 :YGDVVFV 1qwgA 98 :GFEAVEI T0375 190 :SKDVAKH 1qwgA 112 :SLEERNN T0375 197 :LG 1qwgA 126 :NG T0375 200 :QSAEEALRGLYGRV 1qwgA 148 :DDRIKLINFDLDAG T0375 216 :GAVLVCAWAEEG 1qwgA 162 :ADYVIIEGRESG T0375 228 :ADALGPDGKL 1qwgA 176 :KGLFDKEGKV Number of specific fragments extracted= 11 number of extra gaps= 1 total=7320 Number of alignments=590 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)V92 because first residue in template chain is (1qwgA)M1 Warning: unaligning (T0375)A217 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)V218 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 93 :PIATVIINEASGSRTILYYDRSLPDVSATDFEKVD 1qwgA 2 :KAFEFLYEDFQRGLTVVLDKGLPPKFVEDYLKVCG T0375 129 :TQFKWIHIEGRNAS 1qwgA 37 :DYIDFVKFGWGTSA T0375 143 :EQVKMLQRIDAHNTRQP 1qwgA 56 :VVKEKINYYKDWGIKVY T0375 163 :KIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1qwgA 73 :PGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDG T0375 198 :GFQSAEEALRGLYGRVRKG 1qwgA 109 :SDISLEERNNAIKRAKDNG T0375 219 :LVCAWAE 1qwgA 130 :VLTEVGK T0375 226 :EGADALGP 1qwgA 142 :DKQLTIDD T0375 234 :DGKLLHSDAFPPPRVVDTL 1qwgA 198 :DINKVIFEAPQKSQQVAFI T0375 270 :RSVQEALRFGCQVAGKKCGL 1qwgA 217 :LKFGSSVNLANIAFDEVISL T0375 290 :QGFDGIV 1qwgA 241 :RGLRGDT Number of specific fragments extracted= 10 number of extra gaps= 1 total=7330 Number of alignments=591 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)T156 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)R157 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 1 :GSQIL 1qwgA 1 :MKAFE T0375 17 :LVDKYPKEDSEIRCLS 1qwgA 6 :FLYEDFQRGLTVVLDK T0375 52 :GAPCAFM 1qwgA 22 :GLPPKFV T0375 59 :GSMAPGHVADFVLDDLRRYSVDLRYTVFQTT 1qwgA 32 :LKVCGDYIDFVKFGWGTSAVIDRDVVKEKIN T0375 102 :ASGSRTILYYDR 1qwgA 63 :YYKDWGIKVYPG T0375 114 :SLPDVSATDFEKVD 1qwgA 78 :FEYAYSKGKFDEFL T0375 128 :LT 1qwgA 95 :EK T0375 130 :QFKWIHIEGRNAS 1qwgA 98 :GFEAVEISDGSSD T0375 143 :EQVKMLQRIDAHN 1qwgA 115 :ERNNAIKRAKDNG T0375 158 :QPPEQK 1qwgA 130 :VLTEVG T0375 201 :SAEEALRGLYGRVRKGA 1qwgA 146 :TIDDRIKLINFDLDAGA T0375 218 :VLVCAWAE 1qwgA 164 :YVIIEGRE T0375 226 :EGADALGP 1qwgA 174 :KGKGLFDK T0375 234 :DGKLLHSDAFPPPRVV 1qwgA 198 :DINKVIFEAPQKSQQV T0375 264 :FSL 1qwgA 214 :AFI T0375 270 :RSVQEALRFGCQVAGKKCGL 1qwgA 217 :LKFGSSVNLANIAFDEVISL T0375 290 :QGFDGIV 1qwgA 241 :RGLRGDT Number of specific fragments extracted= 17 number of extra gaps= 1 total=7347 Number of alignments=592 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set T0375 1 :GS 1qwgA 1 :MK T0375 24 :EDSEI 1qwgA 3 :AFEFL T0375 87 :QT 1qwgA 8 :YE T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 1qwgA 10 :DFQRGLTVVLDKGLPPKFVEDYLKVC T0375 128 :LTQFKWIHIEGRNAS 1qwgA 36 :GDYIDFVKFGWGTSA T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLF 1qwgA 56 :VVKEKINYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNEC T0375 182 :GYGDVVFVS 1qwgA 97 :LGFEAVEIS T0375 201 :SAEEALRGLYGRVRKGA 1qwgA 146 :TIDDRIKLINFDLDAGA T0375 218 :VLVCAWAEEG 1qwgA 164 :YVIIEGRESG T0375 228 :ADALGPDGKLL 1qwgA 176 :KGLFDKEGKVK T0375 263 :IFSLSQGRS 1qwgA 190 :LDVLAKNVD T0375 279 :GCQVAGKKCGLQGFD 1qwgA 233 :VISLETLRRGLRGDT T0375 294 :GIV 1qwgA 249 :GKV Number of specific fragments extracted= 13 number of extra gaps= 0 total=7360 Number of alignments=593 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)F199 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)Q200 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 1 :GS 1qwgA 1 :MK T0375 22 :PKEDSEI 1qwgA 7 :LYEDFQR T0375 54 :PCAFMGSMA 1qwgA 14 :GLTVVLDKG T0375 65 :HVADFVLDDLRRY 1qwgA 23 :LPPKFVEDYLKVC T0375 128 :LTQFKWIHIEGRNAS 1qwgA 36 :GDYIDFVKFGWGTSA T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1qwgA 56 :VVKEKINYYKDWGIKVYPGGTLFEYAYS T0375 171 :EKPREELFQL 1qwgA 88 :DEFLNECEKL T0375 183 :YGDVVFV 1qwgA 98 :GFEAVEI T0375 190 :SKDV 1qwgA 112 :SLEE T0375 194 :AKHLG 1qwgA 123 :AKDNG T0375 201 :SAEEALRGLYGRVRKGA 1qwgA 146 :TIDDRIKLINFDLDAGA T0375 218 :VLVCAWAEEG 1qwgA 164 :YVIIEGRESG T0375 230 :ALGPDGKLL 1qwgA 178 :LFDKEGKVK T0375 243 :F 1qwgA 197 :V T0375 245 :PPRVVDTLGAGDTFNASVIFSL 1qwgA 198 :DINKVIFEAPQKSQQVAFILKF T0375 268 :QGRS 1qwgA 221 :SSVN T0375 272 :VQEALR 1qwgA 233 :VISLET T0375 285 :KKCGLQG 1qwgA 239 :LRRGLRG T0375 292 :FDGIV 1qwgA 247 :TFGKV Number of specific fragments extracted= 19 number of extra gaps= 1 total=7379 Number of alignments=594 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set T0375 98 :IINEASGSRTILYYDRSLPDVSATDFEKVD 1qwgA 7 :LYEDFQRGLTVVLDKGLPPKFVEDYLKVCG T0375 129 :TQFKWIHIEGRNAS 1qwgA 37 :DYIDFVKFGWGTSA T0375 143 :EQVKMLQRIDAHNTRQP 1qwgA 56 :VVKEKINYYKDWGIKVY T0375 163 :KIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHL 1qwgA 73 :PGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDG T0375 198 :GFQ 1qwgA 110 :DIS T0375 201 :SAEEALRGLYGRVRKGA 1qwgA 146 :TIDDRIKLINFDLDAGA T0375 218 :VLVCAWAE 1qwgA 164 :YVIIEGRE T0375 226 :EGADALGPDGKLLHSDAFPPPRVVDTL 1qwgA 174 :KGKGLFDKEGKVKENELDVLAKNVDIN Number of specific fragments extracted= 8 number of extra gaps= 0 total=7387 Number of alignments=595 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set T0375 100 :NEASGSRTILYYDRSLPDVSATDFEKV 1qwgA 9 :EDFQRGLTVVLDKGLPPKFVEDYLKVC T0375 128 :LTQFKWIHIEGRNAS 1qwgA 36 :GDYIDFVKFGWGTSA T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1qwgA 56 :VVKEKINYYKDWGIKVYPGG T0375 166 :VSVEVEKPREELFQLFGYGDVVFVSKDVAK 1qwgA 76 :TLFEYAYSKGKFDEFLNECEKLGFEAVEIS T0375 198 :GFQ 1qwgA 107 :GSS T0375 201 :SAEEALRGLYGRVRKGA 1qwgA 146 :TIDDRIKLINFDLDAGA T0375 218 :VLVCAWAE 1qwgA 164 :YVIIEGRE T0375 226 :EGADALGP 1qwgA 174 :KGKGLFDK Number of specific fragments extracted= 8 number of extra gaps= 0 total=7395 Number of alignments=596 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set T0375 102 :ASGSRTILYYDRSLPDVSATDFEKV 1qwgA 11 :FQRGLTVVLDKGLPPKFVEDYLKVC T0375 128 :LTQFKWIHIEGRNAS 1qwgA 36 :GDYIDFVKFGWGTSA T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLF 1qwgA 56 :VVKEKINYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNEC T0375 182 :GYGDVVFVS 1qwgA 97 :LGFEAVEIS T0375 201 :SAEEALRGLYGRVRKGA 1qwgA 146 :TIDDRIKLINFDLDAGA T0375 218 :VLVCAWAEEG 1qwgA 164 :YVIIEGRESG T0375 228 :ADALGPDGKL 1qwgA 176 :KGLFDKEGKV Number of specific fragments extracted= 7 number of extra gaps= 0 total=7402 Number of alignments=597 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)F199 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)Q200 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 95 :A 1qwgA 16 :T T0375 108 :ILYYD 1qwgA 17 :VVLDK T0375 117 :DVSATDFEKV 1qwgA 22 :GLPPKFVEDY T0375 127 :DLTQFKWIHIEGRNAS 1qwgA 35 :CGDYIDFVKFGWGTSA T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1qwgA 56 :VVKEKINYYKDWGIKVYPGGTLFEYAYS T0375 171 :EKPREELFQL 1qwgA 88 :DEFLNECEKL T0375 183 :YGDVVFV 1qwgA 98 :GFEAVEI T0375 190 :SKDV 1qwgA 112 :SLEE T0375 194 :AKHLG 1qwgA 123 :AKDNG T0375 201 :SAEEALRGLYGRVRKGA 1qwgA 146 :TIDDRIKLINFDLDAGA T0375 218 :VLVCAWAEEG 1qwgA 164 :YVIIEGRESG T0375 230 :ALGPDGKL 1qwgA 178 :LFDKEGKV Number of specific fragments extracted= 12 number of extra gaps= 1 total=7414 Number of alignments=598 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)N43 because first residue in template chain is (1qwgA)M1 Warning: unaligning (T0375)Q158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)P159 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 44 :SCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEA 1qwgA 2 :KAFEFLYEDFQRGLTVVLDKGLPPKFVEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEK T0375 103 :SGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 1qwgA 66 :DWGIKVYPGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISD T0375 144 :QVKMLQRIDAHNTR 1qwgA 114 :EERNNAIKRAKDNG T0375 160 :PEQKIRVSVEVE 1qwgA 130 :VLTEVGKKMPDK T0375 172 :KPREELFQLFGYGDVVFVSKDVAKHLGFQ 1qwgA 150 :RIKLINFDLDAGADYVIIEGRESGKGKGL T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLG 1qwgA 197 :VDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLRRGLRGDTFG Number of specific fragments extracted= 6 number of extra gaps= 1 total=7420 Number of alignments=599 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)I164 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)R165 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 1 :GSQI 1qwgA 1 :MKAF T0375 16 :SLVDKYPKEDSEIRCL 1qwgA 5 :EFLYEDFQRGLTVVLD T0375 61 :MAPG 1qwgA 52 :IDRD T0375 66 :VADFVLDDLRRYSVD 1qwgA 56 :VVKEKINYYKDWGIK T0375 99 :INEASGSRTILYYDR 1qwgA 71 :VYPGGTLFEYAYSKG T0375 118 :VSATDFEKVDLTQFKWIHIEGRNASE 1qwgA 86 :KFDEFLNECEKLGFEAVEISDGSSDI T0375 150 :RIDAHNTRQPPEQK 1qwgA 114 :EERNNAIKRAKDNG T0375 166 :VSVEVEKP 1qwgA 130 :VLTEVGKK T0375 201 :SAEEALRGLYGRVRKGAVLVCAW 1qwgA 147 :IDDRIKLINFDLDAGADYVIIEG T0375 224 :AEEGADALGPDG 1qwgA 172 :SGKGKGLFDKEG T0375 272 :VQEALRFGCQ 1qwgA 235 :SLETLRRGLR T0375 287 :CGLQGF 1qwgA 245 :GDTFGK Number of specific fragments extracted= 12 number of extra gaps= 1 total=7432 Number of alignments=600 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)Q158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)P159 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 1 :GS 1qwgA 1 :MK T0375 19 :DKYPKEDSEIRCLSQRW 1qwgA 3 :AFEFLYEDFQRGLTVVL T0375 53 :APCAFMGS 1qwgA 39 :IDFVKFGW T0375 62 :AP 1qwgA 47 :GT T0375 64 :GHVADFVLDDLRRYSVDL 1qwgA 54 :RDVVKEKINYYKDWGIKV T0375 109 :LYYDR 1qwgA 72 :YPGGT T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASE 1qwgA 82 :YSKGKFDEFLNECEKLGFEAVEISDGSSDI T0375 144 :QVKMLQRIDAHNTR 1qwgA 114 :EERNNAIKRAKDNG T0375 160 :PEQKIRVSV 1qwgA 130 :VLTEVGKKM T0375 174 :REELFQ 1qwgA 139 :PDKDKQ T0375 200 :Q 1qwgA 145 :L T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEG 1qwgA 148 :DDRIKLINFDLDAGADYVIIEGRESG T0375 228 :ADALGPDG 1qwgA 176 :KGLFDKEG T0375 263 :IFSLSQGRS 1qwgA 236 :LETLRRGLR T0375 289 :LQGF 1qwgA 247 :TFGK Number of specific fragments extracted= 15 number of extra gaps= 1 total=7447 Number of alignments=601 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)Q158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)P159 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 1 :G 1qwgA 1 :M T0375 18 :VDKYPKEDSEIRCLSQRWQ 1qwgA 2 :KAFEFLYEDFQRGLTVVLD T0375 53 :APCAFMG 1qwgA 39 :IDFVKFG T0375 63 :PGHVADFVLDDLRRYSVDLRY 1qwgA 53 :DRDVVKEKINYYKDWGIKVYP T0375 111 :YDR 1qwgA 74 :GGT T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASE 1qwgA 82 :YSKGKFDEFLNECEKLGFEAVEISDGSSDI T0375 144 :QVKMLQRIDAHNTR 1qwgA 114 :EERNNAIKRAKDNG T0375 160 :PEQKIRVS 1qwgA 130 :VLTEVGKK T0375 173 :PREELFQ 1qwgA 138 :MPDKDKQ T0375 189 :VSKDVAKHL 1qwgA 145 :LTIDDRIKL T0375 208 :GLYGRVRKGAVLVCAWAEEG 1qwgA 154 :INFDLDAGADYVIIEGRESG T0375 231 :LGPDG 1qwgA 179 :FDKEG T0375 257 :TFNASVIFSL 1qwgA 210 :SQQVAFILKF T0375 288 :GLQGFDGI 1qwgA 239 :LRRGLRGD Number of specific fragments extracted= 14 number of extra gaps= 1 total=7461 Number of alignments=602 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set T0375 147 :MLQRIDAHNTRQPPEQKIRVSVEVE 1qwgA 4 :FEFLYEDFQRGLTVVLDKGLPPKFV T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1qwgA 29 :EDYLKVCGDYIDFVKFGWGTSAVIDRD T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1qwgA 84 :KGKFDEFLNECEKLGFEAVEISDGSSDISLEERNN T0375 236 :KLLHSDAFPPPRV 1qwgA 201 :KVIFEAPQKSQQV Number of specific fragments extracted= 4 number of extra gaps= 0 total=7465 Number of alignments=603 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set T0375 161 :EQKIRVSVEVEKP 1qwgA 12 :QRGLTVVLDKGLP T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1qwgA 29 :EDYLKVCGDYIDFVKFGWGTSAVIDRD T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1qwgA 85 :GKFDEFLNECEKLGFEAVEISDGSSDISLEERNN Number of specific fragments extracted= 3 number of extra gaps= 0 total=7468 Number of alignments=604 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)Q158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)P159 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 55 :CAFMG 1qwgA 41 :FVKFG T0375 61 :MAP 1qwgA 46 :WGT T0375 64 :GHVADFVLDDLRRYSVDL 1qwgA 54 :RDVVKEKINYYKDWGIKV T0375 109 :LYYDR 1qwgA 72 :YPGGT T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASE 1qwgA 82 :YSKGKFDEFLNECEKLGFEAVEISDGSSDI T0375 144 :QVKMLQRIDAHNTR 1qwgA 114 :EERNNAIKRAKDNG T0375 160 :PEQKIRVSV 1qwgA 130 :VLTEVGKKM T0375 174 :REELFQ 1qwgA 139 :PDKDKQ T0375 200 :Q 1qwgA 145 :L T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEG 1qwgA 148 :DDRIKLINFDLDAGADYVIIEGRESG T0375 228 :ADALGPDGK 1qwgA 176 :KGLFDKEGK Number of specific fragments extracted= 11 number of extra gaps= 1 total=7479 Number of alignments=605 # 1qwgA read from 1qwgA/merged-a2m # found chain 1qwgA in training set Warning: unaligning (T0375)Q158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0375)P159 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0375 54 :PCAFMG 1qwgA 40 :DFVKFG T0375 61 :MA 1qwgA 46 :WG T0375 63 :PGHVADFVLDDLRRYSVDLRY 1qwgA 53 :DRDVVKEKINYYKDWGIKVYP T0375 111 :YDR 1qwgA 74 :GGT T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASE 1qwgA 82 :YSKGKFDEFLNECEKLGFEAVEISDGSSDI T0375 144 :QVKMLQRIDAHNTR 1qwgA 114 :EERNNAIKRAKDNG T0375 160 :PEQKIRVS 1qwgA 130 :VLTEVGKK T0375 173 :PREELFQ 1qwgA 138 :MPDKDKQ T0375 189 :VSKDVAKHL 1qwgA 145 :LTIDDRIKL T0375 208 :GLYGRVRKGAVLVCAWAEEG 1qwgA 154 :INFDLDAGADYVIIEGRESG T0375 231 :LGPDGKL 1qwgA 179 :FDKEGKV T0375 239 :H 1qwgA 186 :K T0375 263 :IFSLSQGRS 1qwgA 190 :LDVLAKNVD Number of specific fragments extracted= 13 number of extra gaps= 1 total=7492 Number of alignments=606 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wqaA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wqaA expands to /projects/compbio/data/pdb/1wqa.pdb.gz 1wqaA:# T0375 read from 1wqaA/merged-a2m # 1wqaA read from 1wqaA/merged-a2m # adding 1wqaA to template set # found chain 1wqaA in template set T0375 1 :GSQILCVGLVVLDVISLVDKY 1wqaA 69 :GCDVIDVGIAPTPAVQWATKH T0375 22 :PKEDSEIRCLSQR 1wqaA 104 :PPEYNGIKLLEPN T0375 38 :GGNASNSCT 1wqaA 117 :GMGLKKERE T0375 47 :ILSLLGAPCAFMGSMAPGHVADFV 1wqaA 128 :VEELFFKEDFDRAKWYEIGEVRRE T0375 73 :DLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSA 1wqaA 152 :DIIKPYIEAIKSKVDVEAIKKRKPFVVVDTSNGAGSLTLPYLLRELGC T0375 122 :DFEKVDLTQFKW 1wqaA 200 :KVITVNAQPDGY T0375 134 :IHIEGRNASEQVKMLQRIDAHN 1wqaA 214 :ARNPEPNEENLKEFMEIVKALG T0375 156 :TRQPPEQKIRVSVEVEKPREELF 1wqaA 257 :RFIQGDKTFALVADAVLKEKGGG T0375 188 :FVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGA 1wqaA 280 :LLVTTVATSNLLDDIAKKHGAKVMRTKVGDLIVARALYENN T0375 229 :DALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1wqaA 341 :DGAMTVAKVVEIFAKSGKKFSELIDELPKYYQIKTKRHVEGDRHAIVNKVAEMARERGYTVDTTDGAK Number of specific fragments extracted= 10 number of extra gaps= 0 total=7502 Number of alignments=607 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 3 :QILCVGLVVLDVISLVDKY 1wqaA 71 :DVIDVGIAPTPAVQWATKH T0375 22 :PKEDSEIRCL 1wqaA 104 :PPEYNGIKLL T0375 35 :WQRGGNASNSCT 1wqaA 114 :EPNGMGLKKERE T0375 47 :ILSLL 1wqaA 128 :VEELF T0375 52 :GAP 1wqaA 144 :EIG T0375 68 :DFV 1wqaA 148 :VRR T0375 72 :DDLRRYSVDLRYT 1wqaA 152 :DIIKPYIEAIKSK T0375 86 :FQTTGSVPIATVIINEASGSRTILYYDRSLPDVSA 1wqaA 165 :VDVEAIKKRKPFVVVDTSNGAGSLTLPYLLRELGC T0375 122 :DFEKVDLT 1wqaA 200 :KVITVNAQ T0375 130 :QFKWIHIEGRNASEQVKMLQRIDAH 1wqaA 213 :PARNPEPNEENLKEFMEIVKALGAD T0375 155 :NTRQPPEQKIRVSVEVEKPREE 1wqaA 256 :GRFIQGDKTFALVADAVLKEKG T0375 188 :FVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGK 1wqaA 280 :LLVTTVATSNLLDDIAKKHGAKVMRTKVGDLIVARALYENNGTIGGEEN T0375 261 :SVIFSLSQGRSV 1wqaA 406 :GAKIIFEDGWVL T0375 273 :QEALRFGCQVAGKKCGL 1wqaA 424 :EPIIRIFSEAKSKEKAQ Number of specific fragments extracted= 14 number of extra gaps= 0 total=7516 Number of alignments=608 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 161 :EQKIRVSVEVEKP 1wqaA 424 :EPIIRIFSEAKSK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7517 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 174 :REELFQLFG 1wqaA 190 :LPYLLRELG Number of specific fragments extracted= 1 number of extra gaps= 0 total=7518 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKED 1wqaA 69 :GCDVIDVGIAPTPAVQWATKHFNAD T0375 26 :SEIRCLSQRWQRGGNASNSCT 1wqaA 105 :PEYNGIKLLEPNGMGLKKERE T0375 47 :ILSLLGAPCAFMGSMAPGHVADFV 1wqaA 128 :VEELFFKEDFDRAKWYEIGEVRRE T0375 73 :DLRRYSVDLRYTVFQTT 1wqaA 152 :DIIKPYIEAIKSKVDVE T0375 90 :GSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQVKMLQRIDAH 1wqaA 173 :RKPFVVVDTSNGAGSLTLPYLLRELGCKVITVNAQPDGYFPARNPEPNEENLKEFMEIVKALGAD T0375 155 :NTRQPPEQKIRVSVEVEKPREELFQLF 1wqaA 254 :ENGRFIQGDKTFALVADAVLKEKGGGL T0375 189 :VSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1wqaA 281 :LVTTVATSNLLDDIAKKHGAKVMRTKVGDLIVARALYENNGTIGGEE T0375 236 :KLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGR 1wqaA 351 :EIFAKSGKKFSELIDELPKYYQIKTKRHVEGDRHA T0375 272 :VQEALRFGCQVAGKK 1wqaA 386 :IVNKVAEMARERGYT T0375 289 :LQGFDGIV 1wqaA 401 :VDTTDGAK Number of specific fragments extracted= 10 number of extra gaps= 0 total=7528 Number of alignments=609 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 1 :GS 1wqaA 1 :MG T0375 3 :QILCVGLVVLDVISLVD 1wqaA 71 :DVIDVGIAPTPAVQWAT T0375 20 :KYPKEDSEIRCL 1wqaA 102 :HNPPEYNGIKLL T0375 35 :WQRGGNASNSCT 1wqaA 114 :EPNGMGLKKERE T0375 47 :ILSLLGA 1wqaA 128 :VEELFFK T0375 54 :PCAFMGSMAPGHVADF 1wqaA 136 :DFDRAKWYEIGEVRRE T0375 72 :DDLRRYSVDLRYTVFQTTGSVPIATVIINEASGS 1wqaA 152 :DIIKPYIEAIKSKVDVEAIKKRKPFVVVDTSNGA T0375 107 :TILYYDRSLPDVSA 1wqaA 186 :GSLTLPYLLRELGC T0375 122 :DFEKVDL 1wqaA 200 :KVITVNA T0375 129 :TQFKWIHIEGR 1wqaA 210 :GYFPARNPEPN T0375 142 :SEQVKMLQRI 1wqaA 221 :EENLKEFMEI T0375 152 :DAHNTRQPPEQKIRVSVEVEKP 1wqaA 253 :DENGRFIQGDKTFALVADAVLK T0375 176 :ELF 1wqaA 275 :EKG T0375 189 :VSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGK 1wqaA 281 :LVTTVATSNLLDDIAKKHGAKVMRTKVGDLIVARALYENNGTIGGEEN T0375 237 :LLHSDAF 1wqaA 337 :VLGRDGA T0375 244 :PPPRVVDTLGAGDTFNASVIFSLSQGR 1wqaA 359 :KFSELIDELPKYYQIKTKRHVEGDRHA T0375 272 :VQEALRFGCQVAGKKCG 1wqaA 386 :IVNKVAEMARERGYTVD T0375 289 :LQG 1wqaA 450 :LEK Number of specific fragments extracted= 18 number of extra gaps= 0 total=7546 Number of alignments=610 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 198 :GFQSAEEALRGLYGRVRKGAVLVCAWAEEG 1wqaA 117 :GMGLKKEREAIVEELFFKEDFDRAKWYEIG Number of specific fragments extracted= 1 number of extra gaps= 0 total=7547 Number of alignments=611 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=7547 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDS 1wqaA 69 :GCDVIDVGIAPTPAVQWATKHFNADG T0375 27 :EIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSAT 1wqaA 106 :EYNGIKLLEPNGMGLKKEREAIVEELFFKEDFDRAKWYEIGEVRREDIIKPYIEAIKSKVDVEAIKKRKPFVVVDTSNGAGSLTLPYLLRELGCK T0375 123 :FEKVDLTQFKW 1wqaA 201 :VITVNAQPDGY T0375 134 :IHIEGRN 1wqaA 214 :ARNPEPN T0375 142 :SEQVKMLQRI 1wqaA 221 :EENLKEFMEI T0375 152 :DAHNTRQPPEQKIRVSVEVEKPREE 1wqaA 253 :DENGRFIQGDKTFALVADAVLKEKG T0375 186 :VVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEG 1wqaA 278 :GGLLVTTVATSNLLDDIAKKHGAKVMRTKVGDLIVARALYEN T0375 229 :DALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1wqaA 341 :DGAMTVAKVVEIFAKSGKKFSELIDELPKYYQIKTKRHVEGDRHAIVNKVAEMARERGYTVDTTDGAK Number of specific fragments extracted= 8 number of extra gaps= 0 total=7555 Number of alignments=612 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 1 :GSQILCVGLVVLDVISLVDKY 1wqaA 69 :GCDVIDVGIAPTPAVQWATKH T0375 22 :PKEDSEIRCL 1wqaA 104 :PPEYNGIKLL T0375 35 :WQRGGNASNSC 1wqaA 114 :EPNGMGLKKER T0375 65 :HVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGS 1wqaA 145 :IGEVRREDIIKPYIEAIKSKVDVEAIKKRKPFVVVDTSNGA T0375 107 :TILYYDRSLPDVSAT 1wqaA 186 :GSLTLPYLLRELGCK T0375 123 :FEKVDLTQFKW 1wqaA 201 :VITVNAQPDGY T0375 134 :IHIEGRN 1wqaA 214 :ARNPEPN T0375 142 :SEQVKMLQRI 1wqaA 221 :EENLKEFMEI T0375 152 :DAH 1wqaA 232 :KAL T0375 155 :NTRQPPEQKIRVSVEVEKPREE 1wqaA 256 :GRFIQGDKTFALVADAVLKEKG T0375 186 :VVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHS 1wqaA 278 :GGLLVTTVATSNLLDDIAKKHGAKVMRTKVGDLIVARALYENNGTIGGEENGGVI T0375 241 :D 1wqaA 335 :E T0375 251 :TLGAGDTFNASVI 1wqaA 336 :HVLGRDGAMTVAK T0375 292 :FDG 1wqaA 443 :LNL T0375 295 :IV 1wqaA 449 :LL Number of specific fragments extracted= 15 number of extra gaps= 0 total=7570 Number of alignments=613 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 161 :EQKIRVSVEVEKPREELFQLFGYGDVV 1wqaA 424 :EPIIRIFSEAKSKEKAQEYLNLGIELL Number of specific fragments extracted= 1 number of extra gaps= 0 total=7571 Number of alignments=614 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=7571 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 2 :SQILCVGLVVLDV 1wqaA 63 :SGLLSVGCDVIDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7572 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=7572 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set Warning: unaligning (T0375)V11 because first residue in template chain is (1wqaA)M1 Warning: unaligning (T0375)G288 because last residue in template chain is (1wqaA)S455 T0375 12 :LDVISLVDKYPKEDSEI 1wqaA 2 :GKLFGTFGVRGIANEKI T0375 29 :RCLSQRWQRGGNASNSCTILSLL 1wqaA 44 :VVVGRDTRVSGEMLKEALISGLL T0375 52 :GAPCAFMGSMAPGHVADFVLDDLRRYSV 1wqaA 69 :GCDVIDVGIAPTPAVQWATKHFNADGGA T0375 84 :TVFQTTGSVPIATVIINE 1wqaA 97 :VITASHNPPEYNGIKLLE T0375 103 :SGSRTILYYDR 1wqaA 115 :PNGMGLKKERE T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1wqaA 128 :VEELFFKEDFDRAKWYEIGEVRREDIIKPYI T0375 145 :VKMLQRIDAHNTRQPPEQK 1wqaA 164 :KVDVEAIKKRKPFVVVDTS T0375 171 :EKPREELFQLF 1wqaA 183 :NGAGSLTLPYL T0375 182 :GYGDVVFVSKDVAKHL 1wqaA 197 :LGCKVITVNAQPDGYF T0375 198 :GF 1wqaA 214 :AR T0375 200 :QSAEEALRGLYGRV 1wqaA 222 :ENLKEFMEIVKALG T0375 216 :GAVLVCAWAEEGADALGP 1wqaA 236 :ADFGVAQDGDADRAVFID T0375 234 :DGK 1wqaA 413 :DGW T0375 238 :LHSDAFPPPRVV 1wqaA 416 :VLVRASGTEPII T0375 261 :SVIFSLSQGRSVQEALRFGCQVAGKKC 1wqaA 428 :RIFSEAKSKEKAQEYLNLGIELLEKAL Number of specific fragments extracted= 15 number of extra gaps= 0 total=7587 Number of alignments=615 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set Warning: unaligning (T0375)G288 because last residue in template chain is (1wqaA)S455 T0375 4 :ILCVG 1wqaA 5 :FGTFG T0375 12 :LDVISL 1wqaA 10 :VRGIAN T0375 29 :RCLSQRWQRGGNASNSCTILSLL 1wqaA 44 :VVVGRDTRVSGEMLKEALISGLL T0375 52 :GAPCAFMGSMAPGHVADFVL 1wqaA 69 :GCDVIDVGIAPTPAVQWATK T0375 76 :RYSVDLRYTVFQTTGSVPIATVIINE 1wqaA 89 :HFNADGGAVITASHNPPEYNGIKLLE T0375 103 :SGSRTILYYDRSL 1wqaA 115 :PNGMGLKKEREAI T0375 119 :SATDFEKVDLTQFKWIHIEGRNASEQ 1wqaA 128 :VEELFFKEDFDRAKWYEIGEVRREDI T0375 145 :VK 1wqaA 164 :KV T0375 149 :QRIDAHNTRQPPEQKIRVSVEV 1wqaA 168 :EAIKKRKPFVVVDTSNGAGSLT T0375 174 :REELFQLF 1wqaA 190 :LPYLLREL T0375 183 :YGDVVFVSKDVAKHL 1wqaA 198 :GCKVITVNAQPDGYF T0375 198 :GF 1wqaA 214 :AR T0375 200 :QSAEEALRGLYGRV 1wqaA 222 :ENLKEFMEIVKALG T0375 216 :GAVLVCAWAE 1wqaA 236 :ADFGVAQDGD T0375 226 :EGADALGP 1wqaA 247 :DRAVFIDE T0375 234 :DGK 1wqaA 413 :DGW T0375 238 :LHSDAF 1wqaA 416 :VLVRAS T0375 269 :G 1wqaA 422 :G T0375 270 :RSVQEALRFGCQVAGKKC 1wqaA 437 :EKAQEYLNLGIELLEKAL Number of specific fragments extracted= 19 number of extra gaps= 0 total=7606 Number of alignments=616 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1wqaA)M1 Warning: unaligning (T0375)G288 because last residue in template chain is (1wqaA)S455 T0375 25 :DSEI 1wqaA 2 :GKLF T0375 41 :ASNSCTILSLL 1wqaA 23 :AMKIGMAFGTL T0375 52 :GAPCAFMGSMAP 1wqaA 40 :KKPLVVVGRDTR T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQT 1wqaA 55 :EMLKEALISGLLSVGCDVIDVGIAP T0375 90 :GSVPIATVIINEASGSR 1wqaA 91 :NADGGAVITASHNPPEY T0375 107 :TILYYDRSLPDVSATDFE 1wqaA 109 :GIKLLEPNGMGLKKEREA T0375 125 :KVDLTQFK 1wqaA 134 :KEDFDRAK T0375 142 :SEQ 1wqaA 142 :WYE T0375 145 :VKML 1wqaA 158 :IEAI T0375 149 :QRIDAHNTRQPPEQKIRVSVEV 1wqaA 168 :EAIKKRKPFVVVDTSNGAGSLT T0375 175 :EELFQLF 1wqaA 191 :PYLLREL T0375 183 :YGDVVFVS 1wqaA 198 :GCKVITVN T0375 200 :QSAEEALRGLYGRV 1wqaA 222 :ENLKEFMEIVKALG T0375 216 :GAVLVCAWAE 1wqaA 236 :ADFGVAQDGD T0375 226 :EGADALGPDGKLL 1wqaA 247 :DRAVFIDENGRFI T0375 243 :F 1wqaA 260 :Q T0375 255 :GDTFNASVIFSLSQG 1wqaA 261 :GDKTFALVADAVLKE T0375 271 :SVQEALRFGCQVAGKKC 1wqaA 438 :KAQEYLNLGIELLEKAL Number of specific fragments extracted= 18 number of extra gaps= 0 total=7624 Number of alignments=617 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1wqaA)M1 Warning: unaligning (T0375)G288 because last residue in template chain is (1wqaA)S455 T0375 3 :Q 1wqaA 2 :G T0375 13 :DVISLVDKYPKED 1wqaA 9 :GVRGIANEKITPE T0375 41 :ASNSCTILSLLGAP 1wqaA 27 :GMAFGTLLKREGRK T0375 55 :CAFMGSMAP 1wqaA 43 :LVVVGRDTR T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQT 1wqaA 55 :EMLKEALISGLLSVGCDVIDVGIAP T0375 89 :T 1wqaA 91 :N T0375 91 :SVPIATVIIN 1wqaA 92 :ADGGAVITAS T0375 101 :E 1wqaA 104 :P T0375 103 :SGSRTILYYDRSLPDVSATDFE 1wqaA 105 :PEYNGIKLLEPNGMGLKKEREA T0375 125 :KVDLTQFK 1wqaA 134 :KEDFDRAK T0375 135 :HIEGRNASEQVKMLQ 1wqaA 148 :VRREDIIKPYIEAIK T0375 150 :RIDAHNTRQPPEQKIRVSVEV 1wqaA 169 :AIKKRKPFVVVDTSNGAGSLT T0375 174 :REELFQL 1wqaA 191 :PYLLREL T0375 183 :YGDVVFVS 1wqaA 198 :GCKVITVN T0375 198 :GF 1wqaA 207 :QP T0375 200 :QSAEEALRGLYGRV 1wqaA 222 :ENLKEFMEIVKALG T0375 216 :GAVLVCAWAE 1wqaA 236 :ADFGVAQDGD T0375 226 :EGADALGPDGKLL 1wqaA 247 :DRAVFIDENGRFI T0375 243 :F 1wqaA 260 :Q T0375 255 :GDTFNASVIFSLSQ 1wqaA 261 :GDKTFALVADAVLK T0375 269 :G 1wqaA 277 :G T0375 270 :RS 1wqaA 434 :KS T0375 272 :VQEALRFGCQVAGKKC 1wqaA 439 :AQEYLNLGIELLEKAL Number of specific fragments extracted= 23 number of extra gaps= 0 total=7647 Number of alignments=618 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 118 :VSATDFEKVDLTQFKWIHIEGRNASEQ 1wqaA 127 :IVEELFFKEDFDRAKWYEIGEVRREDI T0375 145 :VKMLQRIDAHNTRQPPEQK 1wqaA 164 :KVDVEAIKKRKPFVVVDTS T0375 171 :EKPREELFQLF 1wqaA 183 :NGAGSLTLPYL T0375 182 :GYGDVVFVSKDVAKHL 1wqaA 197 :LGCKVITVNAQPDGYF T0375 198 :GF 1wqaA 214 :AR T0375 200 :QSAEEALRGLYGRV 1wqaA 222 :ENLKEFMEIVKALG T0375 216 :GAVLVCAWAE 1wqaA 236 :ADFGVAQDGD T0375 226 :EGADALGPDGKLLH 1wqaA 247 :DRAVFIDENGRFIQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=7655 Number of alignments=619 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 32 :SQRWQRGGNASNSCTILSLL 1wqaA 47 :GRDTRVSGEMLKEALISGLL T0375 52 :GAPCAFMGSMAPGHVADFV 1wqaA 69 :GCDVIDVGIAPTPAVQWAT T0375 75 :RRYSVDLRYTVFQTTGSVPIATVIINE 1wqaA 88 :KHFNADGGAVITASHNPPEYNGIKLLE T0375 103 :SGSRTILYYDRSL 1wqaA 115 :PNGMGLKKEREAI T0375 119 :SATDFEKVDLTQFKWIHIEGRNASEQ 1wqaA 128 :VEELFFKEDFDRAKWYEIGEVRREDI T0375 145 :VK 1wqaA 164 :KV T0375 149 :QRIDAHNTRQPPEQKIRVSVEV 1wqaA 168 :EAIKKRKPFVVVDTSNGAGSLT T0375 174 :REELFQLF 1wqaA 190 :LPYLLREL T0375 183 :YGDVVFVSKDVAKHL 1wqaA 198 :GCKVITVNAQPDGYF T0375 198 :GF 1wqaA 214 :AR T0375 200 :QSAEEALRGLYGRV 1wqaA 222 :ENLKEFMEIVKALG T0375 216 :GAVLVCAWAE 1wqaA 236 :ADFGVAQDGD T0375 226 :EGADALGPDGKLLH 1wqaA 247 :DRAVFIDENGRFIQ Number of specific fragments extracted= 13 number of extra gaps= 0 total=7668 Number of alignments=620 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 45 :CTILSLL 1wqaA 27 :GMAFGTL T0375 52 :GAPCAFMGSMAP 1wqaA 40 :KKPLVVVGRDTR T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQT 1wqaA 55 :EMLKEALISGLLSVGCDVIDVGIAP T0375 90 :GSVPIATVIINEASGSR 1wqaA 91 :NADGGAVITASHNPPEY T0375 107 :TILYYDRSLPDVSATDFE 1wqaA 109 :GIKLLEPNGMGLKKEREA T0375 125 :KVDLTQFK 1wqaA 134 :KEDFDRAK T0375 142 :SEQ 1wqaA 142 :WYE T0375 145 :VKML 1wqaA 158 :IEAI T0375 149 :QRIDAHNTRQPPEQKIRVSVEV 1wqaA 168 :EAIKKRKPFVVVDTSNGAGSLT T0375 175 :EELFQLF 1wqaA 191 :PYLLREL T0375 183 :YGDVVFVS 1wqaA 198 :GCKVITVN T0375 200 :QSAEEALRGLYGRV 1wqaA 222 :ENLKEFMEIVKALG T0375 216 :GAVLVCAWAE 1wqaA 236 :ADFGVAQDGD T0375 226 :EGADALGPDGKLL 1wqaA 247 :DRAVFIDENGRFI T0375 243 :F 1wqaA 260 :Q T0375 255 :GDTFNASVIFSLSQ 1wqaA 261 :GDKTFALVADAVLK T0375 269 :G 1wqaA 277 :G Number of specific fragments extracted= 17 number of extra gaps= 0 total=7685 Number of alignments=621 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 41 :ASNSCTILSLLGAP 1wqaA 27 :GMAFGTLLKREGRK T0375 55 :CAFMGSMAP 1wqaA 43 :LVVVGRDTR T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQT 1wqaA 55 :EMLKEALISGLLSVGCDVIDVGIAP T0375 89 :T 1wqaA 91 :N T0375 91 :SVPIATVIIN 1wqaA 92 :ADGGAVITAS T0375 101 :E 1wqaA 104 :P T0375 103 :SGSRTILYYDRSLPDVSATDFE 1wqaA 105 :PEYNGIKLLEPNGMGLKKEREA T0375 125 :KVDLTQFK 1wqaA 134 :KEDFDRAK T0375 135 :HIEGRNASEQVKMLQ 1wqaA 148 :VRREDIIKPYIEAIK T0375 150 :RIDAHNTRQPPEQKIRVSVEV 1wqaA 169 :AIKKRKPFVVVDTSNGAGSLT T0375 174 :REELFQL 1wqaA 191 :PYLLREL T0375 183 :YGDVVFVS 1wqaA 198 :GCKVITVN T0375 198 :GF 1wqaA 207 :QP T0375 200 :QSAEEALRGLYGRV 1wqaA 222 :ENLKEFMEIVKALG T0375 216 :GAVLVCAWAE 1wqaA 236 :ADFGVAQDGD T0375 226 :EGADALGPDGKLL 1wqaA 247 :DRAVFIDENGRFI T0375 243 :F 1wqaA 260 :Q T0375 255 :GDTFNASVIFSLSQ 1wqaA 261 :GDKTFALVADAVLK T0375 269 :G 1wqaA 277 :G T0375 270 :RSVQEALR 1wqaA 381 :GDRHAIVN Number of specific fragments extracted= 20 number of extra gaps= 0 total=7705 Number of alignments=622 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set Warning: unaligning (T0375)G288 because last residue in template chain is (1wqaA)S455 T0375 1 :GSQILCVG 1wqaA 2 :GKLFGTFG T0375 9 :LVVLDVIS 1wqaA 12 :GIANEKIT T0375 22 :PKEDSEI 1wqaA 20 :PEFAMKI T0375 41 :ASNSCTILSLLGAPCAFM 1wqaA 27 :GMAFGTLLKREGRKKPLV T0375 59 :GSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 1wqaA 50 :TRVSGEMLKEALISGLLSVGCDVIDVGIAPTPAVQWATKHF T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 1wqaA 91 :NADGGAVITASHNPPEYNGIKLLEPN T0375 127 :DLTQFKWIHIEGRNAS 1wqaA 120 :LKKEREAIVEELFFKE T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1wqaA 162 :KSKVDVEAIKKRKPFVVVDT T0375 163 :KIRVSVEVEKPREEL 1wqaA 183 :NGAGSLTLPYLLREL T0375 183 :YGDVVFVSKDVAKHL 1wqaA 198 :GCKVITVNAQPDGYF T0375 198 :GFQ 1wqaA 214 :ARN T0375 201 :SAEEALRGLYGRVRKGA 1wqaA 220 :NEENLKEFMEIVKALGA T0375 218 :VLVCAWAEEGADALGP 1wqaA 238 :FGVAQDGDADRAVFID T0375 234 :DG 1wqaA 413 :DG T0375 237 :LLHSDAFPPPRVV 1wqaA 415 :WVLVRASGTEPII T0375 261 :SVIFSLSQGRSVQEALRFGCQVAGKKC 1wqaA 428 :RIFSEAKSKEKAQEYLNLGIELLEKAL Number of specific fragments extracted= 16 number of extra gaps= 0 total=7721 Number of alignments=623 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 1 :GSQI 1wqaA 1 :MGKL T0375 5 :LCVG 1wqaA 6 :GTFG T0375 9 :LVVLDVIS 1wqaA 12 :GIANEKIT T0375 19 :DK 1wqaA 20 :PE T0375 22 :PKEDSEIRCLSQRWQR 1wqaA 22 :FAMKIGMAFGTLLKRE T0375 52 :GAPCAFM 1wqaA 38 :GRKKPLV T0375 59 :GSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 1wqaA 50 :TRVSGEMLKEALISGLLSVGCDVIDVGIAPTPAVQWATKHF T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 1wqaA 91 :NADGGAVITASHNPPEYNGIKLLEPN T0375 127 :D 1wqaA 120 :L T0375 128 :LTQFKWIHIEGRNAS 1wqaA 137 :FDRAKWYEIGEVRRE T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVS 1wqaA 162 :KSKVDVEAIKKRKPFVVVDTSNGAG T0375 171 :EKPREELFQLF 1wqaA 187 :SLTLPYLLREL T0375 183 :YGDVVFVSKDVAKHL 1wqaA 198 :GCKVITVNAQPDGYF T0375 198 :GFQ 1wqaA 214 :ARN T0375 201 :SAEEALRGLYGRVRKGA 1wqaA 220 :NEENLKEFMEIVKALGA T0375 218 :VLVCAWAE 1wqaA 238 :FGVAQDGD T0375 226 :EGADALGP 1wqaA 247 :DRAVFIDE T0375 234 :DG 1wqaA 413 :DG T0375 237 :LLHSDAFPPPRVVD 1wqaA 415 :WVLVRASGTEPIIR T0375 262 :VIFSLSQGRSVQEALRFGCQVAGKKC 1wqaA 429 :IFSEAKSKEKAQEYLNLGIELLEKAL Number of specific fragments extracted= 20 number of extra gaps= 0 total=7741 Number of alignments=624 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 1 :GS 1wqaA 1 :MG T0375 30 :CLSQRWQ 1wqaA 6 :GTFGVRG T0375 41 :ASNSCTILSLL 1wqaA 27 :GMAFGTLLKRE T0375 52 :GAPCAFMGSMAP 1wqaA 40 :KKPLVVVGRDTR T0375 65 :HVADFVLDDL 1wqaA 52 :VSGEMLKEAL T0375 75 :RRYSVDLRYTVFQT 1wqaA 66 :LSVGCDVIDVGIAP T0375 90 :GSVPIATVII 1wqaA 91 :NADGGAVITA T0375 100 :NEASGSRTILYYDRSLPDVSATD 1wqaA 102 :HNPPEYNGIKLLEPNGMGLKKER T0375 143 :EQVKMLQ 1wqaA 156 :PYIEAIK T0375 150 :RIDAHNTRQPPEQ 1wqaA 169 :AIKKRKPFVVVDT T0375 164 :IRVSVEV 1wqaA 183 :NGAGSLT T0375 174 :REELFQL 1wqaA 191 :PYLLREL T0375 183 :YGDVVFVS 1wqaA 198 :GCKVITVN T0375 201 :SAEEALRGLYGRVRKGA 1wqaA 220 :NEENLKEFMEIVKALGA T0375 218 :VLVCAWAE 1wqaA 238 :FGVAQDGD T0375 226 :EGADALGPDGKL 1wqaA 247 :DRAVFIDENGRF T0375 246 :PR 1wqaA 259 :IQ T0375 255 :GDTFNASVIFSL 1wqaA 261 :GDKTFALVADAV T0375 272 :VQEALRFGCQVAGKKC 1wqaA 439 :AQEYLNLGIELLEKAL Number of specific fragments extracted= 19 number of extra gaps= 0 total=7760 Number of alignments=625 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set Warning: unaligning (T0375)V18 because first residue in template chain is (1wqaA)M1 Warning: unaligning (T0375)G288 because last residue in template chain is (1wqaA)S455 T0375 19 :DKYPKEDSEIRCLSQRWQR 1wqaA 2 :GKLFGTFGVRGIANEKITP T0375 41 :ASNSCTILSLLGAP 1wqaA 27 :GMAFGTLLKREGRK T0375 55 :CAFMGSMAP 1wqaA 42 :PLVVVGRDT T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQT 1wqaA 55 :EMLKEALISGLLSVGCDVIDVGIAP T0375 91 :SVPIATVII 1wqaA 91 :NADGGAVIT T0375 100 :NEASGSRTILYYDRSLPDVSATDFEKV 1wqaA 102 :HNPPEYNGIKLLEPNGMGLKKEREAIV T0375 128 :LTQFK 1wqaA 134 :KEDFD T0375 140 :NAS 1wqaA 140 :AKW T0375 143 :EQVKMLQ 1wqaA 156 :PYIEAIK T0375 150 :RIDAHNTRQPPEQKIRVSVEV 1wqaA 169 :AIKKRKPFVVVDTSNGAGSLT T0375 173 :PREELFQL 1wqaA 190 :LPYLLREL T0375 183 :YGDVVFVS 1wqaA 198 :GCKVITVN T0375 198 :GFQ 1wqaA 211 :YFP T0375 201 :SAE 1wqaA 220 :NEE T0375 204 :EALRGLYGR 1wqaA 226 :EFMEIVKAL T0375 216 :GA 1wqaA 235 :GA T0375 218 :VLVCAWAE 1wqaA 238 :FGVAQDGD T0375 226 :EGADALGPDGKLL 1wqaA 247 :DRAVFIDENGRFI T0375 247 :R 1wqaA 260 :Q T0375 255 :GDTFNASVIFSL 1wqaA 261 :GDKTFALVADAV T0375 272 :VQEALRFGCQVAGKKC 1wqaA 439 :AQEYLNLGIELLEKAL Number of specific fragments extracted= 21 number of extra gaps= 0 total=7781 Number of alignments=626 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 59 :GSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 1wqaA 50 :TRVSGEMLKEALISGLLSVGCDVIDVGIAPTPAVQWATKHF T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 1wqaA 91 :NADGGAVITASHNPPEYNGIKLLEPN T0375 127 :DLTQFKWIHIEGRNAS 1wqaA 120 :LKKEREAIVEELFFKE T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1wqaA 162 :KSKVDVEAIKKRKPFVVVDT T0375 163 :KIRVSVEVEKPREEL 1wqaA 183 :NGAGSLTLPYLLREL T0375 183 :YGDVVFVSKDVAKHL 1wqaA 198 :GCKVITVNAQPDGYF T0375 198 :GFQ 1wqaA 214 :ARN T0375 201 :SAEEALRGLYGRVRKGA 1wqaA 220 :NEENLKEFMEIVKALGA T0375 218 :VLVCAWAEEGADALGPDGKLLH 1wqaA 239 :GVAQDGDADRAVFIDENGRFIQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=7790 Number of alignments=627 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 59 :GSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVII 1wqaA 50 :TRVSGEMLKEALISGLLSVGCDVIDVGIAPTPAVQWATKHF T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 1wqaA 91 :NADGGAVITASHNPPEYNGIKLLEPN T0375 127 :D 1wqaA 120 :L T0375 128 :LTQFKWIHIEGRNAS 1wqaA 137 :FDRAKWYEIGEVRRE T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVS 1wqaA 162 :KSKVDVEAIKKRKPFVVVDTSNGAG T0375 171 :EKPREELFQLF 1wqaA 187 :SLTLPYLLREL T0375 183 :YGDVVFVSKDVAKHL 1wqaA 198 :GCKVITVNAQPDGYF T0375 198 :GFQ 1wqaA 214 :ARN T0375 201 :SAEEALRGLYGRVRKGA 1wqaA 220 :NEENLKEFMEIVKALGA T0375 218 :VLVCAWAE 1wqaA 238 :FGVAQDGD T0375 226 :EGADALGPDGKLLHS 1wqaA 247 :DRAVFIDENGRFIQG Number of specific fragments extracted= 11 number of extra gaps= 0 total=7801 Number of alignments=628 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 2 :SQILCVGLVV 1wqaA 41 :KPLVVVGRDT T0375 36 :QR 1wqaA 51 :RV T0375 40 :NASNSCTILSLLGAPCAFMGSMAP 1wqaA 79 :PTPAVQWATKHFNADGGAVITASH T0375 101 :EASGSRTILYYDRSLPDVSATDFE 1wqaA 103 :NPPEYNGIKLLEPNGMGLKKEREA T0375 125 :KVDLT 1wqaA 130 :ELFFK T0375 130 :QFK 1wqaA 136 :DFD T0375 143 :EQVKMLQ 1wqaA 156 :PYIEAIK T0375 150 :RIDAHNTRQPPEQ 1wqaA 169 :AIKKRKPFVVVDT T0375 164 :IRVSVEV 1wqaA 183 :NGAGSLT T0375 174 :REELFQL 1wqaA 191 :PYLLREL T0375 183 :YGDVVFVS 1wqaA 198 :GCKVITVN T0375 201 :SAEEALRGLYGRVRKGA 1wqaA 220 :NEENLKEFMEIVKALGA T0375 218 :VLVCAWAE 1wqaA 238 :FGVAQDGD T0375 226 :EGADALGPDGKL 1wqaA 247 :DRAVFIDENGRF T0375 246 :PR 1wqaA 259 :IQ T0375 255 :GDTFNASVIFSLSQ 1wqaA 261 :GDKTFALVADAVLK T0375 269 :GR 1wqaA 277 :GG Number of specific fragments extracted= 17 number of extra gaps= 0 total=7818 Number of alignments=629 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 41 :ASNSCTILSLLGAP 1wqaA 27 :GMAFGTLLKREGRK T0375 55 :CAFMGSMAP 1wqaA 42 :PLVVVGRDT T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQT 1wqaA 55 :EMLKEALISGLLSVGCDVIDVGIAP T0375 91 :SVPIATVII 1wqaA 91 :NADGGAVIT T0375 100 :NEASGSRTILYYDRSLPDVSATDFEKV 1wqaA 102 :HNPPEYNGIKLLEPNGMGLKKEREAIV T0375 128 :LTQFK 1wqaA 134 :KEDFD T0375 140 :NAS 1wqaA 140 :AKW T0375 143 :EQVKMLQ 1wqaA 156 :PYIEAIK T0375 150 :RIDAHNTRQPPEQKIRVSVEV 1wqaA 169 :AIKKRKPFVVVDTSNGAGSLT T0375 173 :PREELFQL 1wqaA 190 :LPYLLREL T0375 183 :YGDVVFVS 1wqaA 198 :GCKVITVN T0375 198 :GFQ 1wqaA 211 :YFP T0375 201 :SAE 1wqaA 220 :NEE T0375 204 :EALRGLYGR 1wqaA 226 :EFMEIVKAL T0375 216 :GA 1wqaA 235 :GA T0375 218 :VLVCAWAE 1wqaA 238 :FGVAQDGD T0375 226 :EGADALGPDGKLL 1wqaA 247 :DRAVFIDENGRFI T0375 247 :R 1wqaA 260 :Q T0375 255 :GDTFNASVIFSLS 1wqaA 261 :GDKTFALVADAVL T0375 268 :QGRS 1wqaA 276 :KGGG Number of specific fragments extracted= 20 number of extra gaps= 0 total=7838 Number of alignments=630 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set Warning: unaligning (T0375)G288 because last residue in template chain is (1wqaA)S455 T0375 1 :GSQI 1wqaA 1 :MGKL T0375 66 :VADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 1wqaA 5 :FGTFGVRGIANEKITPEFAMKIGMAFGTLLKREGRKKPLVVVGRDTRVSGEMLKEALISGLLSVGCDVIDVGIAPTPA T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1wqaA 95 :GAVITASHNPPEYNGIKLLEPNGMGLKKEREAIVEELFFKEDFDRAKWYEIGEVRRE T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1wqaA 184 :GAGSLTLPYLLRELGCKVITVNAQPDGYFPARNPE T0375 238 :LHSDAFPPPRVVDTL 1wqaA 390 :VAEMARERGYTVDTT T0375 253 :GAGDTFNASVIFSLSQGRS 1wqaA 406 :GAKIIFEDGWVLVRASGTE T0375 272 :VQEALRFGCQVAGKKC 1wqaA 439 :AQEYLNLGIELLEKAL Number of specific fragments extracted= 7 number of extra gaps= 0 total=7845 Number of alignments=631 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set Warning: unaligning (T0375)G288 because last residue in template chain is (1wqaA)S455 T0375 1 :GSQIL 1wqaA 1 :MGKLF T0375 8 :GLVVLDVISLVDKYPKED 1wqaA 6 :GTFGVRGIANEKITPEFA T0375 59 :GSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDF 1wqaA 50 :TRVSGEMLKEALISGLLSVGCDVIDVGIAPTPAVQWATKHFNADGGAVITASHNPPEYNGIKLLE T0375 136 :IEGRNA 1wqaA 115 :PNGMGL T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1wqaA 125 :EAIVEELFFKEDFDRAKWYEIGEV T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1wqaA 155 :KPYIEAIKSKVDVEAIKKRKPFVVVDT T0375 203 :EEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1wqaA 186 :GSLTLPYLLRELGCKVITVNAQPDGYFPARNPE T0375 267 :SQGRSVQEALRFGCQVAGKKC 1wqaA 434 :KSKEKAQEYLNLGIELLEKAL Number of specific fragments extracted= 8 number of extra gaps= 0 total=7853 Number of alignments=632 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set Warning: unaligning (T0375)G288 because last residue in template chain is (1wqaA)S455 T0375 1 :G 1wqaA 1 :M T0375 19 :DKY 1wqaA 2 :GKL T0375 30 :CLSQRWQ 1wqaA 5 :FGTFGVR T0375 40 :NASNSCTILSLLGAPCAFMGSMAPGH 1wqaA 79 :PTPAVQWATKHFNADGGAVITASHNP T0375 89 :TGSVPI 1wqaA 105 :PEYNGI T0375 107 :TILYYDRSLPDVSATDFEKVDLTQFK 1wqaA 111 :KLLEPNGMGLKKEREAIVEELFFKED T0375 144 :QVKMLQRI 1wqaA 155 :KPYIEAIK T0375 152 :DAHNTRQPPEQKIRVSVEVEKPREELFQL 1wqaA 169 :AIKKRKPFVVVDTSNGAGSLTLPYLLREL T0375 183 :YGDVVFVSK 1wqaA 198 :GCKVITVNA T0375 199 :F 1wqaA 207 :Q T0375 201 :SAEEALRGLYGRVRKGAVLVCAWA 1wqaA 221 :EENLKEFMEIVKALGADFGVAQDG T0375 225 :EEGADALGPDG 1wqaA 246 :ADRAVFIDENG T0375 271 :SVQEALRFGCQVAGKKC 1wqaA 438 :KAQEYLNLGIELLEKAL Number of specific fragments extracted= 13 number of extra gaps= 0 total=7866 Number of alignments=633 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set Warning: unaligning (T0375)V18 because first residue in template chain is (1wqaA)M1 Warning: unaligning (T0375)G288 because last residue in template chain is (1wqaA)S455 T0375 19 :DKYPKEDSEIRCLSQRWQ 1wqaA 2 :GKLFGTFGVRGIANEKIT T0375 41 :ASNSCTILSLLGAP 1wqaA 27 :GMAFGTLLKREGRK T0375 55 :CAFMGSMAP 1wqaA 43 :LVVVGRDTR T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQ 1wqaA 55 :EMLKEALISGLLSVGCDVIDVGIA T0375 90 :GSVPIATV 1wqaA 91 :NADGGAVI T0375 99 :INEA 1wqaA 99 :TASH T0375 103 :SGSRTILYYDRSLPDVSATDFEKV 1wqaA 105 :PEYNGIKLLEPNGMGLKKEREAIV T0375 127 :DLTQFK 1wqaA 133 :FKEDFD T0375 144 :QVKMLQRI 1wqaA 155 :KPYIEAIK T0375 152 :DAHNTRQPPEQKIRVSVEVEKPREELFQL 1wqaA 169 :AIKKRKPFVVVDTSNGAGSLTLPYLLREL T0375 183 :YGDVVFVS 1wqaA 198 :GCKVITVN T0375 205 :ALRGLYGRVRKGAVLVCAWA 1wqaA 225 :KEFMEIVKALGADFGVAQDG T0375 225 :EEGADALGPDG 1wqaA 246 :ADRAVFIDENG T0375 255 :GDTFNASVIFSL 1wqaA 261 :GDKTFALVADAV T0375 272 :VQEALRFGCQVAGKKC 1wqaA 439 :AQEYLNLGIELLEKAL Number of specific fragments extracted= 15 number of extra gaps= 0 total=7881 Number of alignments=634 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 59 :GSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLP 1wqaA 50 :TRVSGEMLKEALISGLLSVGCDVIDVGIAPTPAVQWATKHFNADGGAVITASHNPPEY T0375 131 :FKWIHIEGRNASE 1wqaA 108 :NGIKLLEPNGMGL T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQ 1wqaA 125 :EAIVEELFFKEDFDRAKWYEIGEVRREDIIKPYIEAIKSKVDVEAIKKRKPFVVVDT T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGK 1wqaA 184 :GAGSLTLPYLLRELGCKVITVNAQPDGYFPARNPEP T0375 238 :LHSDAFPPPRVVDTLGA 1wqaA 220 :NEENLKEFMEIVKALGA Number of specific fragments extracted= 5 number of extra gaps= 0 total=7886 Number of alignments=635 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 59 :GSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDF 1wqaA 50 :TRVSGEMLKEALISGLLSVGCDVIDVGIAPTPAVQWATKHFNADGGAVITASHNPPEYNGIKLLE T0375 136 :IEGRNA 1wqaA 115 :PNGMGL T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1wqaA 125 :EAIVEELFFKEDFDRAKWYEIGEV T0375 174 :REELFQLFGYGDVVFVSKDVAKHLGFQ 1wqaA 155 :KPYIEAIKSKVDVEAIKKRKPFVVVDT T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGK 1wqaA 185 :AGSLTLPYLLRELGCKVITVNAQPDGYFPARNPEP T0375 238 :LHSDAFPPPRVVDTLGA 1wqaA 220 :NEENLKEFMEIVKALGA Number of specific fragments extracted= 6 number of extra gaps= 0 total=7892 Number of alignments=636 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 3 :QILCVGLV 1wqaA 71 :DVIDVGIA T0375 40 :NASNSCTILSLLGAPCAFMGSMAPGH 1wqaA 79 :PTPAVQWATKHFNADGGAVITASHNP T0375 89 :TGSVPIATV 1wqaA 105 :PEYNGIKLL T0375 110 :YYDRSLPDVSATDFEKVDLTQFKW 1wqaA 114 :EPNGMGLKKEREAIVEELFFKEDF T0375 144 :QVKMLQRI 1wqaA 155 :KPYIEAIK T0375 152 :DAHNTRQPPEQKIRVSVEVEKPREELFQL 1wqaA 169 :AIKKRKPFVVVDTSNGAGSLTLPYLLREL T0375 183 :YGDVVFVSK 1wqaA 198 :GCKVITVNA T0375 199 :F 1wqaA 207 :Q T0375 201 :SAEEALRGLYGRVRKGAVLVCAWA 1wqaA 221 :EENLKEFMEIVKALGADFGVAQDG T0375 225 :EEGADALGPDGKL 1wqaA 246 :ADRAVFIDENGRF T0375 240 :SD 1wqaA 259 :IQ T0375 255 :GDTFNASVIFSLSQ 1wqaA 261 :GDKTFALVADAVLK T0375 269 :G 1wqaA 277 :G Number of specific fragments extracted= 13 number of extra gaps= 0 total=7905 Number of alignments=637 # 1wqaA read from 1wqaA/merged-a2m # found chain 1wqaA in template set T0375 41 :ASNSCTILSLLGAP 1wqaA 27 :GMAFGTLLKREGRK T0375 55 :CAFMGSMAP 1wqaA 43 :LVVVGRDTR T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQ 1wqaA 55 :EMLKEALISGLLSVGCDVIDVGIA T0375 90 :GSVPIATV 1wqaA 91 :NADGGAVI T0375 99 :INEA 1wqaA 99 :TASH T0375 103 :SGSRTILYYDRSLPDVSATDFEKV 1wqaA 105 :PEYNGIKLLEPNGMGLKKEREAIV T0375 127 :DLTQFK 1wqaA 133 :FKEDFD T0375 144 :QVKMLQRI 1wqaA 155 :KPYIEAIK T0375 152 :DAHNTRQPPEQKIRVSVEVEKPREELFQL 1wqaA 169 :AIKKRKPFVVVDTSNGAGSLTLPYLLREL T0375 183 :YGDVVFVS 1wqaA 198 :GCKVITVN T0375 205 :ALRGLYGRVRKGAVLVCAWA 1wqaA 225 :KEFMEIVKALGADFGVAQDG T0375 225 :EEGADALGPDGKLLH 1wqaA 246 :ADRAVFIDENGRFIQ T0375 255 :GDTFNASVIFSLSQ 1wqaA 261 :GDKTFALVADAVLK T0375 269 :GR 1wqaA 277 :GG Number of specific fragments extracted= 14 number of extra gaps= 0 total=7919 Number of alignments=638 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ofuA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ofuA expands to /projects/compbio/data/pdb/1ofu.pdb.gz 1ofuA:# T0375 read from 1ofuA/merged-a2m # 1ofuA read from 1ofuA/merged-a2m # adding 1ofuA to template set # found chain 1ofuA in template set Warning: unaligning (T0375)K286 because last residue in template chain is (1ofuA)G317 T0375 1 :GSQILCVGL 1ofuA 11 :TAVIKVIGV T0375 10 :VVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYT 1ofuA 25 :NAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDRERISEVLEGADMV T0375 86 :F 1ofuA 100 :F T0375 89 :TGSVPIATVIINE 1ofuA 111 :TGAAPIIAEVAKE T0375 103 :SGSRTILYY 1ofuA 124 :MGILTVAVV T0375 114 :SLPDVS 1ofuA 133 :TRPFPF T0375 122 :DFEKVDLTQFKWIHIEGRNASEQVKM 1ofuA 139 :EGRKRMQIADEGIRALAESVDSLITI T0375 148 :LQRIDAHNTRQPPE 1ofuA 169 :LLTILGKDASLLAA T0375 162 :QKIRVSVEVEKPREELFQLFGYGDVVFVS 1ofuA 199 :DIIKRPGMINVDFADVKTVMSEMGMAMMG T0375 197 :LGFQSAEEALRGLYGRVRKGAVLV 1ofuA 228 :TGCASGPNRAREATEAAIRNPLLE T0375 227 :GADALGPDGKLLHSDAFPPPRVVDTLGAGDTF 1ofuA 252 :DVNLQGARGILVNITAGPDLSLGEYSDVGNII T0375 259 :NASVIFSLSQGRSVQEALRFGCQVAGK 1ofuA 290 :HATVKVGTVIDADMRDELHVTVVATGL Number of specific fragments extracted= 12 number of extra gaps= 0 total=7931 Number of alignments=639 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set Warning: unaligning (T0375)K286 because last residue in template chain is (1ofuA)G317 T0375 1 :GSQILCVGL 1ofuA 11 :TAVIKVIGV T0375 11 :VLDVISLVDK 1ofuA 26 :AVNHMAKNNV T0375 24 :EDSEIRCLSQRWQRGGNASNSCTI 1ofuA 36 :EGVEFICANTDAQALKNIAARTVL T0375 48 :LSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYT 1ofuA 63 :PGVTKGLGAGANPEVGRQAALEDRERISEVLEGADMV T0375 86 :F 1ofuA 100 :F T0375 89 :TGSVPIATVIINE 1ofuA 111 :TGAAPIIAEVAKE T0375 103 :SG 1ofuA 124 :MG T0375 107 :TILYYDRSLPDVSATDFEKV 1ofuA 126 :ILTVAVVTRPFPFEGRKRMQ T0375 127 :DLTQFK 1ofuA 153 :ALAESV T0375 133 :WIHIEGRNASE 1ofuA 169 :LLTILGKDASL T0375 145 :VKMLQRIDAH 1ofuA 180 :LAAFAKADDV T0375 155 :NTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLG 1ofuA 192 :GAVRGISDIIKRPGMINVDFADVKTVMSEMGMAMMGTGCASGPN T0375 201 :SAEEALR 1ofuA 236 :RAREATE T0375 212 :RVRKGAVLV 1ofuA 243 :AAIRNPLLE T0375 227 :GADALGPDGKLLHSDAFPPPRVVDTLGAGD 1ofuA 252 :DVNLQGARGILVNITAGPDLSLGEYSDVGN T0375 259 :NASVIFSLSQGRSVQEALRFGCQVAGK 1ofuA 290 :HATVKVGTVIDADMRDELHVTVVATGL Number of specific fragments extracted= 16 number of extra gaps= 0 total=7947 Number of alignments=640 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 57 :FMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSR 1ofuA 18 :GVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTK Number of specific fragments extracted= 1 number of extra gaps= 0 total=7948 Number of alignments=641 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=7948 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 2 :SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQ 1ofuA 14 :IKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQ T0375 177 :LFQLFGYGDVVFVSKDVAKHLGFQS 1ofuA 49 :ALKNIAARTVLQLGPGVTKGLGAGA T0375 202 :AEEALRGLYGRVRK 1ofuA 78 :GRQAALEDRERISE T0375 216 :GAVLVCAWAEEG 1ofuA 114 :APIIAEVAKEMG T0375 237 :LLHSDAFPPPRVVDTL 1ofuA 126 :ILTVAVVTRPFPFEGR T0375 253 :GAGDTFNASVIFSLSQGRSV 1ofuA 181 :AAFAKADDVLAGAVRGISDI T0375 273 :QEALRFGCQVAGK 1ofuA 221 :MGMAMMGTGCASG T0375 286 :KCGLQGFDGIV 1ofuA 252 :DVNLQGARGIL Number of specific fragments extracted= 8 number of extra gaps= 0 total=7956 Number of alignments=642 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 4 :ILCVGL 1ofuA 14 :IKVIGV T0375 12 :LDVISLVDKYPKEDSEIRCLSQRWQ 1ofuA 24 :GNAVNHMAKNNVEGVEFICANTDAQ T0375 171 :EKPREELFQ 1ofuA 119 :EVAKEMGIL T0375 180 :LFGYGDVVFVS 1ofuA 218 :MSEMGMAMMGT T0375 228 :ADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQG 1ofuA 229 :GCASGPNRAREATEAAIRNPLLEDVNLQGARGILVNITAGPD T0375 270 :RSVQEALRFGCQVAGKKCGLQG 1ofuA 287 :ASEHATVKVGTVIDADMRDELH T0375 292 :FDGIV 1ofuA 313 :ATGLG Number of specific fragments extracted= 7 number of extra gaps= 0 total=7963 Number of alignments=643 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 170 :VEKPREELFQLFGYGDVVFV 1ofuA 82 :ALEDRERISEVLEGADMVFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=7964 Number of alignments=644 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=7964 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 104 :GSRTILYYDRSLPDVSATDFEKV 1ofuA 257 :GARGILVNITAGPDLSLGEYSDV Number of specific fragments extracted= 1 number of extra gaps= 0 total=7965 Number of alignments=645 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=7965 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set Warning: unaligning (T0375)Y21 because first residue in template chain is (1ofuA)T11 Warning: unaligning (T0375)G291 because last residue in template chain is (1ofuA)G317 T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 1ofuA 12 :AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQA T0375 76 :RYSVDLRYTVFQTTGSVPIATVIINE 1ofuA 50 :LKNIAARTVLQLGPGVTKGLGAGANP T0375 111 :YDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1ofuA 76 :EVGRQAALEDRERISEVLEGADMVFITTGMGGGT T0375 145 :VKML 1ofuA 114 :APII T0375 149 :QRIDAHNTRQPPEQKIRVSVEV 1ofuA 119 :EVAKEMGILTVAVVTRPFPFEG T0375 171 :EKPREELFQLFGYGD 1ofuA 145 :QIADEGIRALAESVD T0375 186 :VVFVSKDVAKHL 1ofuA 162 :ITIPNEKLLTIL T0375 198 :GFQSAEEALRGLYGRV 1ofuA 175 :KDASLLAAFAKADDVL T0375 216 :GAVL 1ofuA 191 :AGAV T0375 226 :EGADALGPDGKLLHSDAFPPPRVVDTLG 1ofuA 195 :RGISDIIKRPGMINVDFADVKTVMSEMG T0375 259 :NASVIFSLSQG 1ofuA 223 :MAMMGTGCASG T0375 270 :RSVQEALRFGCQVAGKKCGLQ 1ofuA 296 :GTVIDADMRDELHVTVVATGL Number of specific fragments extracted= 12 number of extra gaps= 0 total=7977 Number of alignments=646 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set Warning: unaligning (T0375)R29 because first residue in template chain is (1ofuA)T11 T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 1ofuA 12 :AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQA T0375 76 :RYSVDLRYTVFQTTGSVPIA 1ofuA 50 :LKNIAARTVLQLGPGVTKGL T0375 107 :TILYYDRSLPDVSATDFE 1ofuA 70 :GAGANPEVGRQAALEDRE T0375 125 :KVDLTQFKWIHIEGRNASEQ 1ofuA 90 :SEVLEGADMVFITTGMGGGT T0375 145 :VKML 1ofuA 114 :APII T0375 149 :QRIDAHNTRQPPEQKIRVSVE 1ofuA 119 :EVAKEMGILTVAVVTRPFPFE T0375 170 :VEKPREELFQLFGYGD 1ofuA 144 :MQIADEGIRALAESVD T0375 186 :VVFVSKDVAKHLGF 1ofuA 162 :ITIPNEKLLTILGK T0375 200 :QSAEEALRGLYGRV 1ofuA 177 :ASLLAAFAKADDVL T0375 216 :GAVL 1ofuA 191 :AGAV T0375 226 :EGADALGP 1ofuA 195 :RGISDIIK T0375 244 :PPPRVVDTLGA 1ofuA 248 :PLLEDVNLQGA T0375 261 :SVIFSLSQG 1ofuA 260 :GILVNITAG T0375 277 :RFGCQVAGKKCGL 1ofuA 285 :QFASEHATVKVGT T0375 293 :D 1ofuA 298 :V T0375 294 :GI 1ofuA 300 :DA Number of specific fragments extracted= 16 number of extra gaps= 0 total=7993 Number of alignments=647 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 1 :GSQILCVG 1ofuA 11 :TAVIKVIG T0375 38 :GGNASNSCTILSLLGAP 1ofuA 20 :GGGGGNAVNHMAKNNVE T0375 55 :CAFMGSMAPGHVA 1ofuA 38 :VEFICANTDAQAL T0375 78 :SVDLRYTVFQ 1ofuA 52 :NIAARTVLQL T0375 103 :SG 1ofuA 67 :KG T0375 111 :YDRSLPD 1ofuA 70 :GAGANPE T0375 120 :ATDFE 1ofuA 83 :LEDRE T0375 125 :KVDLTQFKWIHI 1ofuA 90 :SEVLEGADMVFI T0375 137 :EGRNASEQ 1ofuA 104 :GMGGGTGT T0375 145 :VKML 1ofuA 114 :APII T0375 149 :QRIDAHNTRQPPEQKIRVSVEVEKPREELFQ 1ofuA 119 :EVAKEMGILTVAVVTRPFPFEGRKRMQIADE T0375 180 :LFGYGD 1ofuA 154 :LAESVD T0375 186 :VVF 1ofuA 161 :LIT T0375 189 :VSKDVAKHLGF 1ofuA 165 :PNEKLLTILGK T0375 200 :QSAEEALRGLYGR 1ofuA 235 :NRAREATEAAIRN T0375 214 :RKGA 1ofuA 256 :QGAR T0375 218 :VLVCAWAEE 1ofuA 262 :LVNITAGPD T0375 234 :DGK 1ofuA 289 :EHA T0375 245 :PPRVVDTL 1ofuA 292 :TVKVGTVI T0375 289 :LQGFDG 1ofuA 300 :DADMRD Number of specific fragments extracted= 20 number of extra gaps= 0 total=8013 Number of alignments=648 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 1 :GSQILCVG 1ofuA 11 :TAVIKVIG T0375 38 :GGNASNSCTILSLLGAP 1ofuA 20 :GGGGGNAVNHMAKNNVE T0375 55 :CAFMGSMAPGHVA 1ofuA 38 :VEFICANTDAQAL T0375 78 :SVDLRYTVFQT 1ofuA 52 :NIAARTVLQLG T0375 103 :SGSR 1ofuA 67 :KGLG T0375 114 :S 1ofuA 71 :A T0375 117 :DVSATDFE 1ofuA 72 :GANPEVGR T0375 125 :KVD 1ofuA 84 :EDR T0375 128 :LTQFKWIHI 1ofuA 93 :LEGADMVFI T0375 137 :EGRNASEQ 1ofuA 104 :GMGGGTGT T0375 145 :VKMLQRIDAHNTRQPPEQKIRVSVEVEKPR 1ofuA 115 :PIIAEVAKEMGILTVAVVTRPFPFEGRKRM T0375 175 :EELFQLF 1ofuA 148 :DEGIRAL T0375 182 :GYGD 1ofuA 156 :ESVD T0375 186 :VVFVSKDVAKHL 1ofuA 161 :LITIPNEKLLTI T0375 198 :GF 1ofuA 174 :GK T0375 200 :QSAEEALRGLYGR 1ofuA 235 :NRAREATEAAIRN T0375 213 :VRKGAVLVCA 1ofuA 255 :LQGARGILVN T0375 229 :DALGP 1ofuA 265 :ITAGP T0375 234 :DG 1ofuA 289 :EH T0375 295 :I 1ofuA 291 :A Number of specific fragments extracted= 20 number of extra gaps= 0 total=8033 Number of alignments=649 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 35 :WQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 1ofuA 17 :IGVGGGGGNAVNHMAKNNVEGVEFICANTDAQA T0375 76 :RYSVDLRYTVFQTTGSVPIATVIINE 1ofuA 50 :LKNIAARTVLQLGPGVTKGLGAGANP T0375 111 :YDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1ofuA 76 :EVGRQAALEDRERISEVLEGADMVFITTGMGGGT T0375 145 :VKML 1ofuA 114 :APII T0375 149 :QRIDAHNTRQP 1ofuA 119 :EVAKEMGILTV Number of specific fragments extracted= 5 number of extra gaps= 0 total=8038 Number of alignments=650 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 34 :RWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 1ofuA 16 :VIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQA T0375 76 :RYSVDLRYTVFQTTGSVPIA 1ofuA 50 :LKNIAARTVLQLGPGVTKGL T0375 107 :TILYYDRSLPDVSATDFE 1ofuA 70 :GAGANPEVGRQAALEDRE T0375 125 :KVDLTQFKWIHIEGRNASEQ 1ofuA 90 :SEVLEGADMVFITTGMGGGT T0375 145 :VKML 1ofuA 114 :APII T0375 149 :QRIDAHNTRQPPEQKIRVSVE 1ofuA 119 :EVAKEMGILTVAVVTRPFPFE T0375 170 :VEKPREELFQLFGYGD 1ofuA 144 :MQIADEGIRALAESVD T0375 186 :VVFVSKDVAKHLGF 1ofuA 162 :ITIPNEKLLTILGK T0375 200 :QSAEEALRGLYGRV 1ofuA 177 :ASLLAAFAKADDVL T0375 216 :G 1ofuA 191 :A Number of specific fragments extracted= 10 number of extra gaps= 0 total=8048 Number of alignments=651 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 4 :ILCVG 1ofuA 14 :IKVIG T0375 38 :GGNASNSCTILSLLGAP 1ofuA 20 :GGGGGNAVNHMAKNNVE T0375 55 :CAFMGSMAPGHVA 1ofuA 38 :VEFICANTDAQAL T0375 78 :SVDLRYTVFQ 1ofuA 52 :NIAARTVLQL T0375 103 :SG 1ofuA 67 :KG T0375 111 :YDRSLPD 1ofuA 70 :GAGANPE T0375 120 :ATDFE 1ofuA 83 :LEDRE T0375 125 :KVDLTQFKWIHI 1ofuA 90 :SEVLEGADMVFI T0375 137 :EGRNASEQ 1ofuA 104 :GMGGGTGT T0375 145 :VKML 1ofuA 114 :APII T0375 149 :QRIDAHNTRQPPEQKIRVSVEVEKPREELFQ 1ofuA 119 :EVAKEMGILTVAVVTRPFPFEGRKRMQIADE T0375 180 :LFGYGD 1ofuA 154 :LAESVD T0375 186 :VVFVSKDVAKHLGF 1ofuA 162 :ITIPNEKLLTILGK T0375 200 :QSAEEALRGLY 1ofuA 177 :ASLLAAFAKAD Number of specific fragments extracted= 14 number of extra gaps= 0 total=8062 Number of alignments=652 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 1 :GSQILCVG 1ofuA 11 :TAVIKVIG T0375 38 :GGNASNSCTILSLLGAP 1ofuA 20 :GGGGGNAVNHMAKNNVE T0375 55 :CAFMGSMAPGHVA 1ofuA 38 :VEFICANTDAQAL T0375 78 :SVDLRYTVFQT 1ofuA 52 :NIAARTVLQLG T0375 103 :SGSR 1ofuA 67 :KGLG T0375 114 :S 1ofuA 71 :A T0375 117 :DVSATDFE 1ofuA 72 :GANPEVGR T0375 125 :KVD 1ofuA 84 :EDR T0375 128 :LTQFKWIHI 1ofuA 93 :LEGADMVFI T0375 137 :EGRNASEQ 1ofuA 104 :GMGGGTGT T0375 145 :VKMLQRIDAHNTRQPP 1ofuA 115 :PIIAEVAKEMGILTVA T0375 186 :VVFV 1ofuA 131 :VVTR T0375 190 :SKDVAKH 1ofuA 140 :GRKRMQI T0375 202 :AEEALRGLYGR 1ofuA 147 :ADEGIRALAES T0375 216 :GAVLVCA 1ofuA 158 :VDSLITI T0375 261 :SVIFSLSQGRSVQEALRFGCQVAGKKCG 1ofuA 168 :KLLTILGKDASLLAAFAKADDVLAGAVR T0375 289 :LQGFDGI 1ofuA 203 :RPGMINV Number of specific fragments extracted= 17 number of extra gaps= 0 total=8079 Number of alignments=653 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set Warning: unaligning (T0375)S32 because first residue in template chain is (1ofuA)T11 Warning: unaligning (T0375)K286 because last residue in template chain is (1ofuA)G317 T0375 33 :QRWQR 1ofuA 12 :AVIKV T0375 38 :GGNASNSCTILSLLGAPCAFMGSMAPGHVA 1ofuA 20 :GGGGGNAVNHMAKNNVEGVEFICANTDAQA T0375 76 :RYSVDLRYTVFQTT 1ofuA 50 :LKNIAARTVLQLGP T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 1ofuA 64 :GVTKGLGAGANPEVGRQAALEDRERI T0375 127 :DLTQFKWIHIEGRNAS 1ofuA 92 :VLEGADMVFITTGMGG T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1ofuA 113 :AAPIIAEVAKEMGILTVAVVTRPFPFEG T0375 171 :EKPREELFQLFGYGD 1ofuA 145 :QIADEGIRALAESVD T0375 186 :VVFVSKDVAKHLGFQ 1ofuA 162 :ITIPNEKLLTILGKD T0375 201 :SAEEALRGLYGRVRK 1ofuA 178 :SLLAAFAKADDVLAG T0375 216 :GA 1ofuA 196 :GI T0375 218 :VLVCAWAEEGADALGP 1ofuA 199 :DIIKRPGMINVDFADV T0375 234 :D 1ofuA 280 :G T0375 236 :KLLHSDAFP 1ofuA 281 :NIIEQFASE T0375 259 :NASVIFSLSQGRSVQEALRFGCQVAGK 1ofuA 290 :HATVKVGTVIDADMRDELHVTVVATGL Number of specific fragments extracted= 14 number of extra gaps= 0 total=8093 Number of alignments=654 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set Warning: unaligning (T0375)R29 because first residue in template chain is (1ofuA)T11 Warning: unaligning (T0375)G291 because last residue in template chain is (1ofuA)G317 T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 1ofuA 12 :AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQA T0375 76 :RYSVDLRYTVFQTTGSV 1ofuA 50 :LKNIAARTVLQLGPGVT T0375 96 :TVIINEASG 1ofuA 67 :KGLGAGANP T0375 113 :RSLPDVSATDFEKV 1ofuA 76 :EVGRQAALEDRERI T0375 127 :DLTQFKWIHIEGRNAS 1ofuA 92 :VLEGADMVFITTGMGG T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1ofuA 113 :AAPIIAEVAKEMGILTVAVV T0375 163 :KIRVSV 1ofuA 139 :EGRKRM T0375 171 :EKPREELFQLFGYGD 1ofuA 145 :QIADEGIRALAESVD T0375 186 :VVFVSKDVAKHLGFQ 1ofuA 162 :ITIPNEKLLTILGKD T0375 201 :SAEEALRGLYGRVRK 1ofuA 178 :SLLAAFAKADDVLAG T0375 216 :GAVLVCAWAE 1ofuA 196 :GISDIIKRPG T0375 226 :EG 1ofuA 207 :IN T0375 267 :SQGRSVQEALRFGCQV 1ofuA 298 :VIDADMRDELHVTVVA T0375 288 :GLQ 1ofuA 314 :TGL Number of specific fragments extracted= 14 number of extra gaps= 0 total=8107 Number of alignments=655 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set Warning: unaligning (T0375)G291 because last residue in template chain is (1ofuA)G317 T0375 1 :GSQILCVG 1ofuA 11 :TAVIKVIG T0375 38 :GGNASNSCTILSLLGAP 1ofuA 20 :GGGGGNAVNHMAKNNVE T0375 55 :CAFMGSMAPGHVA 1ofuA 38 :VEFICANTDAQAL T0375 78 :SVDLRYTVF 1ofuA 52 :NIAARTVLQ T0375 111 :YDR 1ofuA 61 :LGP T0375 114 :SLPDVSATDFEKVD 1ofuA 69 :LGAGANPEVGRQAA T0375 128 :LTQFKWIHIE 1ofuA 93 :LEGADMVFIT T0375 139 :RNAS 1ofuA 105 :MGGG T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1ofuA 113 :AAPIIAEVAKEMGILTVAVVTRPFPFEG T0375 171 :EKPREELFQLFGYGD 1ofuA 145 :QIADEGIRALAESVD T0375 186 :VVFVSKDVAKHL 1ofuA 162 :ITIPNEKLLTIL T0375 199 :FQ 1ofuA 175 :KD T0375 201 :SAEEALRGLYGR 1ofuA 178 :SLLAAFAKADDV T0375 236 :KLLHSDAFP 1ofuA 305 :DELHVTVVA T0375 288 :GLQ 1ofuA 314 :TGL Number of specific fragments extracted= 15 number of extra gaps= 0 total=8122 Number of alignments=656 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set Warning: unaligning (T0375)D293 because last residue in template chain is (1ofuA)G317 T0375 1 :GSQILCVG 1ofuA 11 :TAVIKVIG T0375 38 :GGNASNSCTILSLLGAP 1ofuA 20 :GGGGGNAVNHMAKNNVE T0375 55 :CAFMGSMAPGHVA 1ofuA 38 :VEFICANTDAQAL T0375 78 :SVDLRYTVFQT 1ofuA 52 :NIAARTVLQLG T0375 112 :DRSLPDVSATDFEKV 1ofuA 67 :KGLGAGANPEVGRQA T0375 128 :LTQFKWIHIE 1ofuA 93 :LEGADMVFIT T0375 138 :GRNA 1ofuA 105 :MGGG T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLF 1ofuA 113 :AAPIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGI T0375 182 :GYGD 1ofuA 156 :ESVD T0375 186 :VVFVSKDVAKHL 1ofuA 161 :LITIPNEKLLTI T0375 198 :GFQ 1ofuA 176 :DAS T0375 201 :SAE 1ofuA 272 :SLG T0375 204 :EALRGLYGRVRKGA 1ofuA 278 :DVGNIIEQFASEHA T0375 218 :VLVCAWAEE 1ofuA 293 :VKVGTVIDA T0375 234 :DG 1ofuA 302 :DM T0375 236 :KLLHSDAF 1ofuA 305 :DELHVTVV T0375 291 :GF 1ofuA 315 :GL Number of specific fragments extracted= 17 number of extra gaps= 0 total=8139 Number of alignments=657 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 35 :WQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 1ofuA 17 :IGVGGGGGNAVNHMAKNNVEGVEFICANTDAQA T0375 76 :RYSVDLRYTVFQTT 1ofuA 50 :LKNIAARTVLQLGP T0375 101 :EASGSRTILYYDRSLPDVSATDFEKV 1ofuA 64 :GVTKGLGAGANPEVGRQAALEDRERI T0375 127 :DLTQFKWIHIEGRNAS 1ofuA 92 :VLEGADMVFITTGMGG T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1ofuA 113 :AAPIIAEVAKEMGILTVAVVTRPFPFEG T0375 171 :EKPREELFQLFGYGD 1ofuA 145 :QIADEGIRALAESVD T0375 186 :VVFVSKDVAKHLGFQ 1ofuA 162 :ITIPNEKLLTILGKD Number of specific fragments extracted= 7 number of extra gaps= 0 total=8146 Number of alignments=658 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 34 :RWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVA 1ofuA 16 :VIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQA T0375 76 :RYSVDLRYTVFQTTGSV 1ofuA 50 :LKNIAARTVLQLGPGVT T0375 96 :TVIINEASG 1ofuA 67 :KGLGAGANP T0375 113 :RSLPDVSATDFEKV 1ofuA 76 :EVGRQAALEDRERI T0375 127 :DLTQFKWIHIEGRNAS 1ofuA 92 :VLEGADMVFITTGMGG T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1ofuA 113 :AAPIIAEVAKEMGILTVAVV T0375 163 :KIRVSV 1ofuA 139 :EGRKRM T0375 171 :EKPREELFQLFGYGD 1ofuA 145 :QIADEGIRALAESVD T0375 186 :VVFVSKDVAKHLGFQ 1ofuA 162 :ITIPNEKLLTILGKD T0375 201 :SAEEALRGLYGRVRK 1ofuA 178 :SLLAAFAKADDVLAG T0375 216 :GAVLVCAWAE 1ofuA 196 :GISDIIKRPG T0375 226 :EGA 1ofuA 207 :INV T0375 236 :KLLHSDAFPPPRVVDTLGAGD 1ofuA 210 :DFADVKTVMSEMGMAMMGTGC Number of specific fragments extracted= 13 number of extra gaps= 0 total=8159 Number of alignments=659 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 4 :ILCVG 1ofuA 14 :IKVIG T0375 38 :GGNASNSCTILSLLGAP 1ofuA 20 :GGGGGNAVNHMAKNNVE T0375 55 :CAFMGSMAPGHVA 1ofuA 38 :VEFICANTDAQAL T0375 78 :SVDLRYTVF 1ofuA 52 :NIAARTVLQ T0375 111 :YDR 1ofuA 61 :LGP T0375 114 :SLPDVSATDFEKVD 1ofuA 69 :LGAGANPEVGRQAA T0375 128 :LTQFKWIHIE 1ofuA 93 :LEGADMVFIT T0375 139 :RNAS 1ofuA 105 :MGGG T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEV 1ofuA 113 :AAPIIAEVAKEMGILTVAVVTRPFPFEG T0375 171 :EKPREELFQLFGYGD 1ofuA 145 :QIADEGIRALAESVD T0375 186 :VVFVSKDVAKHL 1ofuA 162 :ITIPNEKLLTIL T0375 198 :GFQSAEEALRGLY 1ofuA 175 :KDASLLAAFAKAD T0375 274 :EALRFGCQVAGKKCGLQGFDGI 1ofuA 188 :DVLAGAVRGISDIIKRPGMINV Number of specific fragments extracted= 13 number of extra gaps= 0 total=8172 Number of alignments=660 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 1 :GSQILCVG 1ofuA 11 :TAVIKVIG T0375 38 :GGNASNSCTILSLLGAP 1ofuA 20 :GGGGGNAVNHMAKNNVE T0375 55 :CAFMGSMAPGHVA 1ofuA 38 :VEFICANTDAQAL T0375 78 :SVDLRYTVFQT 1ofuA 52 :NIAARTVLQLG T0375 112 :DRSLPDVSATDFEKV 1ofuA 67 :KGLGAGANPEVGRQA T0375 128 :LTQFKWIHIE 1ofuA 93 :LEGADMVFIT T0375 138 :GRNA 1ofuA 105 :MGGG T0375 143 :EQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLF 1ofuA 113 :AAPIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGI T0375 182 :GYGD 1ofuA 156 :ESVD T0375 186 :VVFVSKDVAKHL 1ofuA 161 :LITIPNEKLLTI T0375 198 :GFQ 1ofuA 174 :GKD T0375 201 :SAEEALRGLYGRV 1ofuA 178 :SLLAAFAKADDVL T0375 277 :RFGCQVAGKKCGLQGFDGI 1ofuA 191 :AGAVRGISDIIKRPGMINV Number of specific fragments extracted= 13 number of extra gaps= 0 total=8185 Number of alignments=661 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set Warning: unaligning (T0375)R29 because first residue in template chain is (1ofuA)T11 Warning: unaligning (T0375)G291 because last residue in template chain is (1ofuA)G317 T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPG 1ofuA 12 :AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTD T0375 68 :DFVLDDLRRYSV 1ofuA 47 :AQALKNIAARTV T0375 84 :TVFQTTGSVPIATVIINEASGSRTILYYDRSLP 1ofuA 59 :LQLGPGVTKGLGAGANPEVGRQAALEDRERISE T0375 127 :DLTQFKWIHIEGRNASE 1ofuA 92 :VLEGADMVFITTGMGGG T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1ofuA 112 :GAAPIIAEVAKEMGILTVAVVTRPFPFE T0375 172 :KPREELFQLFGYGD 1ofuA 146 :IADEGIRALAESVD T0375 186 :VVFVSKDVAKHLGFQ 1ofuA 162 :ITIPNEKLLTILGKD T0375 201 :SAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1ofuA 234 :PNRAREATEAAIRNPLLEDVNLQGARGILVNITAG T0375 238 :LHSDAFPPPRVVDT 1ofuA 288 :SEHATVKVGTVIDA T0375 271 :SVQEALRF 1ofuA 302 :DMRDELHV T0375 284 :GKKCGLQ 1ofuA 310 :TVVATGL Number of specific fragments extracted= 11 number of extra gaps= 0 total=8196 Number of alignments=662 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set Warning: unaligning (T0375)R29 because first residue in template chain is (1ofuA)T11 Warning: unaligning (T0375)G291 because last residue in template chain is (1ofuA)G317 T0375 30 :CLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGH 1ofuA 12 :AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDA T0375 68 :DF 1ofuA 48 :QA T0375 71 :LDDLRRYSV 1ofuA 50 :LKNIAARTV T0375 84 :TVFQTTGSVPIATVIINEASG 1ofuA 59 :LQLGPGVTKGLGAGANPEVGR T0375 115 :LPDVSATDFEKVDLTQFKWIHIEGRNASE 1ofuA 80 :QAALEDRERISEVLEGADMVFITTGMGGG T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1ofuA 112 :GAAPIIAEVAKEMGILTVAVVTRP T0375 174 :REELFQLFGYGD 1ofuA 148 :DEGIRALAESVD T0375 186 :VVFVSKDVAKHLGFQ 1ofuA 162 :ITIPNEKLLTILGKD T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDG 1ofuA 235 :NRAREATEAAIRNPLLEDVNLQGARGILVNITAG T0375 238 :LHSDAFPPPRVVDT 1ofuA 288 :SEHATVKVGTVIDA T0375 271 :SVQEALRF 1ofuA 302 :DMRDELHV T0375 284 :GKKCGLQ 1ofuA 310 :TVVATGL Number of specific fragments extracted= 12 number of extra gaps= 0 total=8208 Number of alignments=663 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set Warning: unaligning (T0375)G291 because last residue in template chain is (1ofuA)G317 T0375 4 :ILCVG 1ofuA 14 :IKVIG T0375 37 :RGGNASNSCTILSLLGAP 1ofuA 19 :VGGGGGNAVNHMAKNNVE T0375 55 :CAFMGSMAPGHV 1ofuA 38 :VEFICANTDAQA T0375 78 :SVDLRYTVFQ 1ofuA 52 :NIAARTVLQL T0375 88 :TT 1ofuA 67 :KG T0375 109 :LYYDR 1ofuA 69 :LGAGA T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASE 1ofuA 79 :RQAALEDRERISEVLEGADMVFITTGMGGG T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1ofuA 112 :GAAPIIAEVAKEMGILTVAVVTRPFPFE T0375 172 :KPREELFQLFGYGD 1ofuA 146 :IADEGIRALAESVD T0375 186 :VVFVSKDVAKHLGFQ 1ofuA 161 :LITIPNEKLLTILGK T0375 201 :SAEEALRGLYGR 1ofuA 234 :PNRAREATEAAI T0375 236 :K 1ofuA 288 :S T0375 239 :HSDAFPPPRVVDT 1ofuA 289 :EHATVKVGTVIDA T0375 285 :KKCGLQ 1ofuA 311 :VVATGL Number of specific fragments extracted= 14 number of extra gaps= 0 total=8222 Number of alignments=664 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set Warning: unaligning (T0375)G291 because last residue in template chain is (1ofuA)G317 T0375 2 :SQILCVG 1ofuA 12 :AVIKVIG T0375 37 :RGGNASNSCTILSLLGAP 1ofuA 19 :VGGGGGNAVNHMAKNNVE T0375 55 :CAFMGSMAPGHV 1ofuA 38 :VEFICANTDAQA T0375 78 :SVDLRYTVFQ 1ofuA 52 :NIAARTVLQL T0375 88 :TT 1ofuA 67 :KG T0375 109 :LYYDRSLPDVSATDF 1ofuA 69 :LGAGANPEVGRQAAL T0375 124 :EKVDLTQFKWIHIEGRNASE 1ofuA 89 :ISEVLEGADMVFITTGMGGG T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1ofuA 112 :GAAPIIAEVAKEMGILTVAVVTRPFPFE T0375 172 :KPREELFQLF 1ofuA 145 :QIADEGIRAL T0375 182 :GYGD 1ofuA 156 :ESVD T0375 186 :VVFVSKDVAKHLGFQ 1ofuA 161 :LITIPNEKLLTILGK T0375 201 :SAEEALRGLYGRV 1ofuA 271 :LSLGEYSDVGNII T0375 214 :RKGAVLVCAW 1ofuA 289 :EHATVKVGTV T0375 224 :AEEGADALG 1ofuA 303 :MRDELHVTV T0375 239 :HS 1ofuA 313 :AT T0375 289 :LQ 1ofuA 315 :GL Number of specific fragments extracted= 16 number of extra gaps= 0 total=8238 Number of alignments=665 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 118 :VSATDFEKVDLTQFKWIHIEGRNASE 1ofuA 83 :LEDRERISEVLEGADMVFITTGMGGG T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1ofuA 112 :GAAPIIAEVAKEMGILTVAVVTRPFPFE T0375 172 :KPREELFQLFGYGD 1ofuA 146 :IADEGIRALAESVD T0375 186 :VVFVSKDVAKHLGFQSAEEALRGL 1ofuA 162 :ITIPNEKLLTILGKDASLLAAFAK Number of specific fragments extracted= 4 number of extra gaps= 0 total=8242 Number of alignments=666 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 34 :RWQRGGNASNSCTILSLLGAPCAFMGSMAPGH 1ofuA 16 :VIGVGGGGGNAVNHMAKNNVEGVEFICANTDA T0375 68 :DF 1ofuA 48 :QA T0375 71 :LDDLRRYSV 1ofuA 50 :LKNIAARTV T0375 84 :TVFQTTGSVPIATVIINEASG 1ofuA 59 :LQLGPGVTKGLGAGANPEVGR T0375 115 :LPDVSATDFEKVDLTQFKWIHIEGRNASE 1ofuA 80 :QAALEDRERISEVLEGADMVFITTGMGGG T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1ofuA 112 :GAAPIIAEVAKEMGILTVAVVTRP T0375 174 :REELFQLFGYGD 1ofuA 148 :DEGIRALAESVD T0375 186 :VVFVSKDVAKHLGFQSAEEALRGL 1ofuA 162 :ITIPNEKLLTILGKDASLLAAFAK Number of specific fragments extracted= 8 number of extra gaps= 0 total=8250 Number of alignments=667 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 4 :ILCVG 1ofuA 14 :IKVIG T0375 37 :RGGNASNSCTILSLLGAP 1ofuA 19 :VGGGGGNAVNHMAKNNVE T0375 55 :CAFMGSMAPGHV 1ofuA 38 :VEFICANTDAQA T0375 78 :SVDLRYTVFQ 1ofuA 52 :NIAARTVLQL T0375 88 :TT 1ofuA 67 :KG T0375 109 :LYYDR 1ofuA 69 :LGAGA T0375 114 :SLPDVSATDFEKVDLTQFKWIHIEGRNASE 1ofuA 79 :RQAALEDRERISEVLEGADMVFITTGMGGG T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1ofuA 112 :GAAPIIAEVAKEMGILTVAVVTRPFPFE T0375 172 :KPREELFQLFGYGD 1ofuA 146 :IADEGIRALAESVD T0375 186 :VVFVSKDVAKHLGFQSAEEALRGL 1ofuA 162 :ITIPNEKLLTILGKDASLLAAFAK T0375 211 :G 1ofuA 186 :A Number of specific fragments extracted= 11 number of extra gaps= 0 total=8261 Number of alignments=668 # 1ofuA read from 1ofuA/merged-a2m # found chain 1ofuA in template set T0375 3 :QILCVG 1ofuA 13 :VIKVIG T0375 37 :RGGNASNSCTILSLLGAP 1ofuA 19 :VGGGGGNAVNHMAKNNVE T0375 55 :CAFMGSMAPGHV 1ofuA 38 :VEFICANTDAQA T0375 78 :SVDLRYTVFQ 1ofuA 52 :NIAARTVLQL T0375 88 :TT 1ofuA 67 :KG T0375 109 :LYYDRSLPDVSATDF 1ofuA 69 :LGAGANPEVGRQAAL T0375 124 :EKVDLTQFKWIHIEGRNASE 1ofuA 89 :ISEVLEGADMVFITTGMGGG T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVE 1ofuA 112 :GAAPIIAEVAKEMGILTVAVVTRPFPFE T0375 172 :KPREELFQLF 1ofuA 145 :QIADEGIRAL T0375 182 :GYGD 1ofuA 156 :ESVD T0375 186 :VVFVSKDVAKHLGFQS 1ofuA 161 :LITIPNEKLLTILGKD T0375 202 :AEEALRGLY 1ofuA 178 :SLLAAFAKA T0375 256 :DTFNASVIFSLSQ 1ofuA 187 :DDVLAGAVRGISD T0375 269 :GRSVQEALR 1ofuA 208 :NVDFADVKT Number of specific fragments extracted= 14 number of extra gaps= 0 total=8275 Number of alignments=669 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1v8aA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1v8aA expands to /projects/compbio/data/pdb/1v8a.pdb.gz 1v8aA:Skipped atom 1137, because occupancy 0.500 <= existing 0.500 in 1v8aA Skipped atom 1139, because occupancy 0.500 <= existing 0.500 in 1v8aA Skipped atom 1141, because occupancy 0.500 <= existing 0.500 in 1v8aA Skipped atom 1143, because occupancy 0.500 <= existing 0.500 in 1v8aA # T0375 read from 1v8aA/merged-a2m # 1v8aA read from 1v8aA/merged-a2m # adding 1v8aA to template set # found chain 1v8aA in template set Warning: unaligning (T0375)G8 because first residue in template chain is (1v8aA)M1 Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 9 :LVVLDVISLVDKYPKEDSEI 1v8aA 2 :KFIIEALKRVRERRPLVHNI T0375 44 :SCTILSLLGAPCAFMGSMAP 1v8aA 22 :TNFVVMNTTANALLALGASP T0375 66 :VADFVLDDLRRYSVDLRYTVF 1v8aA 42 :VMAHAEEELEEMIRLADAVVI T0375 87 :QTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDF 1v8aA 67 :LDSGWRRSMVKATEIANELGKPIVLDPVGAGATKFRT T0375 175 :EELFQ 1v8aA 104 :RVSLE T0375 180 :LFGYGDVVFVS 1v8aA 110 :LSRGVDVLKGN T0375 191 :KDVAKHLG 1v8aA 122 :GEISALLG T0375 200 :QSAEEALRGLYGRV 1v8aA 145 :EEAKKLTMNAAREF T0375 216 :GAVLVCA 1v8aA 159 :NTTVAVT T0375 224 :AEEG 1v8aA 166 :GAVD T0375 230 :ALGPDGKLLHSDAFPPP 1v8aA 170 :YVSDGRRTFAVYNGHEL T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSV 1v8aA 187 :LGRVTGTGCMVAALTGAFVAVTEPL T0375 274 :EALRFGCQVAGKKCGLQGFDGIV 1v8aA 212 :KATTSALVTFGIAAEKAYEEAKY Number of specific fragments extracted= 13 number of extra gaps= 1 total=8288 Number of alignments=670 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)G8 because first residue in template chain is (1v8aA)M1 Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 9 :LVVLDVISLVDKYPKEDSEI 1v8aA 2 :KFIIEALKRVRERRPLVHNI T0375 43 :NSCTILSLLG 1v8aA 22 :TNFVVMNTTA T0375 54 :PCAFMGSMAP 1v8aA 32 :NALLALGASP T0375 66 :VADFVLDDLRRYSVDLRYTVF 1v8aA 42 :VMAHAEEELEEMIRLADAVVI T0375 87 :QTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDF 1v8aA 67 :LDSGWRRSMVKATEIANELGKPIVLDPVGAGATKFRT T0375 175 :EELFQ 1v8aA 104 :RVSLE T0375 180 :LFGYGDVVFVSKD 1v8aA 110 :LSRGVDVLKGNFG T0375 193 :VAKHLG 1v8aA 124 :ISALLG T0375 200 :QSAEEALRGLYGRV 1v8aA 145 :EEAKKLTMNAAREF T0375 216 :GAVLVCA 1v8aA 159 :NTTVAVT T0375 224 :AEEG 1v8aA 166 :GAVD T0375 230 :ALGPDGKLLHSDAFPPP 1v8aA 170 :YVSDGRRTFAVYNGHEL T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSV 1v8aA 187 :LGRVTGTGCMVAALTGAFVAVTEPL T0375 274 :EALRFGCQVAGKKCGLQGFDGIV 1v8aA 212 :KATTSALVTFGIAAEKAYEEAKY Number of specific fragments extracted= 14 number of extra gaps= 1 total=8302 Number of alignments=671 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 97 :VIINEASGSRTILYYDRSLPDVSATDFEKV 1v8aA 24 :FVVMNTTANALLALGASPVMAHAEEELEEM T0375 128 :LTQFKWIHI 1v8aA 54 :IRLADAVVI T0375 137 :EGRNASEQVKMLQRI 1v8aA 64 :IGTLDSGWRRSMVKA T0375 156 :TRQPPEQKIRVSVE 1v8aA 79 :TEIANELGKPIVLD T0375 170 :VEKPREELFQ 1v8aA 99 :TKFRTRVSLE T0375 180 :LFGYGDVVFVS 1v8aA 110 :LSRGVDVLKGN T0375 191 :KDVAKHLG 1v8aA 122 :GEISALLG T0375 200 :QSAEEALRGLYGRV 1v8aA 145 :EEAKKLTMNAAREF T0375 216 :GAVLVCA 1v8aA 159 :NTTVAVT T0375 224 :AEEG 1v8aA 166 :GAVD T0375 230 :ALGPDGKLLHSDAFPPP 1v8aA 170 :YVSDGRRTFAVYNGHEL T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSV 1v8aA 187 :LGRVTGTGCMVAALTGAFVAVTEPL T0375 274 :EALRFGCQVAGKKCGLQG 1v8aA 212 :KATTSALVTFGIAAEKAY Number of specific fragments extracted= 13 number of extra gaps= 1 total=8315 Number of alignments=672 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 91 :SVP 1v8aA 19 :HNI T0375 95 :ATVIINEASGSRTILYYDRSLPDVSATDFEKV 1v8aA 22 :TNFVVMNTTANALLALGASPVMAHAEEELEEM T0375 128 :LTQFKWIHI 1v8aA 54 :IRLADAVVI T0375 137 :EGRNASEQVKMLQRI 1v8aA 64 :IGTLDSGWRRSMVKA T0375 156 :TRQPPEQKIRVSVE 1v8aA 79 :TEIANELGKPIVLD T0375 170 :VEKPREELFQ 1v8aA 99 :TKFRTRVSLE T0375 180 :LFGYGDVVFVSKD 1v8aA 110 :LSRGVDVLKGNFG T0375 193 :VAKHLG 1v8aA 124 :ISALLG T0375 200 :QSAEEALRGLYGRV 1v8aA 145 :EEAKKLTMNAAREF T0375 216 :GAVLVCA 1v8aA 159 :NTTVAVT T0375 224 :AEEG 1v8aA 166 :GAVD T0375 230 :ALGPDGKLLHSDAFPPP 1v8aA 170 :YVSDGRRTFAVYNGHEL T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSV 1v8aA 187 :LGRVTGTGCMVAALTGAFVAVTEPL T0375 274 :EALRFGCQVAGKKCGLQG 1v8aA 212 :KATTSALVTFGIAAEKAY Number of specific fragments extracted= 14 number of extra gaps= 1 total=8329 Number of alignments=673 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 1 :GSQI 1v8aA 1 :MKFI T0375 15 :ISLVDKY 1v8aA 5 :IEALKRV T0375 23 :KEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGS 1v8aA 12 :RERRPLVHNITNFVVMNTTANALLALGASPVMAHAEEE T0375 70 :VLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDF 1v8aA 50 :LEEMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGATKFRT T0375 175 :EELFQ 1v8aA 104 :RVSLE T0375 180 :LFGYGDVVFVSKDVAKHL 1v8aA 110 :LSRGVDVLKGNFGEISAL T0375 198 :G 1v8aA 129 :G T0375 200 :QSAEEALRGLYGR 1v8aA 145 :EEAKKLTMNAARE T0375 213 :VRKGAV 1v8aA 163 :AVTGAV T0375 229 :DALGPDGKLLHSDAFPPP 1v8aA 169 :DYVSDGRRTFAVYNGHEL T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSV 1v8aA 187 :LGRVTGTGCMVAALTGAFVAVTEPL T0375 274 :EALRFGCQVAGKKCGLQGFDGIV 1v8aA 212 :KATTSALVTFGIAAEKAYEEAKY Number of specific fragments extracted= 12 number of extra gaps= 1 total=8341 Number of alignments=674 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 1 :GSQI 1v8aA 1 :MKFI T0375 7 :VGLV 1v8aA 5 :IEAL T0375 12 :LDV 1v8aA 9 :KRV T0375 23 :KEDSEIRCLSQRWQRGGNASNSCTILSLLG 1v8aA 12 :RERRPLVHNITNFVVMNTTANALLALGASP T0375 61 :MAPGHV 1v8aA 42 :VMAHAE T0375 68 :DFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDF 1v8aA 48 :EELEEMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGATKFRT T0375 175 :EELFQ 1v8aA 104 :RVSLE T0375 180 :LFGYGDVVFVSKDVAKHL 1v8aA 110 :LSRGVDVLKGNFGEISAL T0375 198 :G 1v8aA 129 :G T0375 200 :QSAEEALRGLYGRV 1v8aA 145 :EEAKKLTMNAAREF T0375 215 :KGAVLVC 1v8aA 159 :NTTVAVT T0375 224 :AEEG 1v8aA 166 :GAVD T0375 230 :ALGPDGKLLHSDAFPPP 1v8aA 170 :YVSDGRRTFAVYNGHEL T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSV 1v8aA 187 :LGRVTGTGCMVAALTGAFVAVTEPL T0375 274 :EALRFGCQVAGKKCGLQGFDG 1v8aA 212 :KATTSALVTFGIAAEKAYEEA T0375 295 :IV 1v8aA 237 :SF Number of specific fragments extracted= 16 number of extra gaps= 1 total=8357 Number of alignments=675 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 86 :FQTTGSVPIATVIINEASGSRTILYYDRSLPDVSA 1v8aA 14 :RRPLVHNITNFVVMNTTANALLALGASPVMAHAEE T0375 122 :DFEK 1v8aA 49 :ELEE T0375 127 :DLTQFKWIHI 1v8aA 53 :MIRLADAVVI T0375 137 :EGRNASEQVKMLQRIDAHNT 1v8aA 64 :IGTLDSGWRRSMVKATEIAN T0375 161 :EQKIRVSVEV 1v8aA 84 :ELGKPIVLDP T0375 171 :EKPREELFQ 1v8aA 100 :KFRTRVSLE T0375 180 :LFGYGDVVFVSKDVAKHL 1v8aA 110 :LSRGVDVLKGNFGEISAL T0375 198 :G 1v8aA 129 :G T0375 200 :QSAEEALRGLYGR 1v8aA 145 :EEAKKLTMNAARE T0375 213 :VRKGAV 1v8aA 163 :AVTGAV T0375 229 :DALGPDGKLLHSDAFPPP 1v8aA 169 :DYVSDGRRTFAVYNGHEL T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSV 1v8aA 187 :LGRVTGTGCMVAALTGAFVAVTEPL T0375 274 :EALRFGCQVAGKKCGLQG 1v8aA 212 :KATTSALVTFGIAAEKAY Number of specific fragments extracted= 13 number of extra gaps= 1 total=8370 Number of alignments=676 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 83 :YTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSA 1v8aA 11 :VRERRPLVHNITNFVVMNTTANALLALGASPVMAHAEE T0375 122 :DFEK 1v8aA 49 :ELEE T0375 127 :DLTQFKWIHI 1v8aA 53 :MIRLADAVVI T0375 137 :EGRNASEQVKMLQRIDAHNT 1v8aA 64 :IGTLDSGWRRSMVKATEIAN T0375 161 :EQKIRVSVEV 1v8aA 84 :ELGKPIVLDP T0375 171 :EKPREELFQ 1v8aA 100 :KFRTRVSLE T0375 180 :LFGYGDVVFVSKDVAKHL 1v8aA 110 :LSRGVDVLKGNFGEISAL T0375 198 :G 1v8aA 129 :G T0375 200 :QSAEEALRGLYGRV 1v8aA 145 :EEAKKLTMNAAREF T0375 215 :KGAVLVC 1v8aA 159 :NTTVAVT T0375 224 :AEEG 1v8aA 166 :GAVD T0375 230 :ALGPDGKLLHSDAFPPP 1v8aA 170 :YVSDGRRTFAVYNGHEL T0375 248 :VVDTLGAGDTFNASVIFSLSQGRSV 1v8aA 187 :LGRVTGTGCMVAALTGAFVAVTEPL T0375 274 :EALRFGCQVAGKKCGLQG 1v8aA 212 :KATTSALVTFGIAAEKAY Number of specific fragments extracted= 14 number of extra gaps= 1 total=8384 Number of alignments=677 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)D185 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1v8aA)G143 Warning: unaligning (T0375)G198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 1 :GSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAP 1v8aA 26 :VMNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKP T0375 65 :HVADFVLDDLRRYSV 1v8aA 89 :IVLDPVGAGATKFRT T0375 158 :QPPEQKIRVSVEVEKP 1v8aA 104 :RVSLEILSRGVDVLKG T0375 174 :REELFQLFGYG 1v8aA 121 :FGEISALLGEE T0375 200 :QSAEEALRGLYGRVRKGAVLVC 1v8aA 145 :EEAKKLTMNAAREFNTTVAVTG T0375 227 :GAD 1v8aA 167 :AVD T0375 231 :LGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQG 1v8aA 170 :YVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAVT T0375 271 :SVQEALRFGCQ 1v8aA 209 :EPLKATTSALV T0375 282 :VAGKKCGLQ 1v8aA 223 :IAAEKAYEE T0375 291 :GFDGIV 1v8aA 233 :KYPGSF Number of specific fragments extracted= 10 number of extra gaps= 0 total=8394 Number of alignments=678 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)G198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 1 :GSQI 1v8aA 1 :MKFI T0375 5 :LCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMG 1v8aA 30 :TANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSGWRRSMVKATEIANE T0375 61 :MAPGHVADFVLDDLRRYSV 1v8aA 85 :LGKPIVLDPVGAGATKFRT T0375 200 :QSAEEALRGLYGRVRKGAVLVC 1v8aA 145 :EEAKKLTMNAAREFNTTVAVTG T0375 227 :GAD 1v8aA 167 :AVD T0375 231 :LGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQG 1v8aA 170 :YVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAVT T0375 271 :SVQEALRFGCQV 1v8aA 209 :EPLKATTSALVT T0375 283 :AGKKCGLQG 1v8aA 224 :AAEKAYEEA T0375 292 :FDGIV 1v8aA 260 :VREVE Number of specific fragments extracted= 9 number of extra gaps= 0 total=8403 Number of alignments=679 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)D185 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1v8aA)G143 Warning: unaligning (T0375)G198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 174 :REELFQLFGYG 1v8aA 121 :FGEISALLGEE T0375 200 :QSAEEALRGLYGRVRKGAVLVC 1v8aA 145 :EEAKKLTMNAAREFNTTVAVTG T0375 227 :GAD 1v8aA 167 :AVD T0375 231 :LGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQG 1v8aA 170 :YVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAVT T0375 271 :SVQEALRFGCQVAG 1v8aA 209 :EPLKATTSALVTFG Number of specific fragments extracted= 5 number of extra gaps= 0 total=8408 Number of alignments=680 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)D185 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1v8aA)G143 Warning: unaligning (T0375)G198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)F199 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 175 :EELFQLFGYG 1v8aA 122 :GEISALLGEE T0375 200 :QSAEEALRGLYGRVRKGAVLVC 1v8aA 145 :EEAKKLTMNAAREFNTTVAVTG T0375 227 :GAD 1v8aA 167 :AVD T0375 231 :LGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQG 1v8aA 170 :YVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAVT T0375 271 :SVQEALRFGCQVAGK 1v8aA 209 :EPLKATTSALVTFGI Number of specific fragments extracted= 5 number of extra gaps= 0 total=8413 Number of alignments=681 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set T0375 246 :PRVVDTLGAGDT 1v8aA 88 :PIVLDPVGAGAT Number of specific fragments extracted= 1 number of extra gaps= 0 total=8414 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set T0375 245 :PPRVVDTLGAGDTF 1v8aA 87 :KPIVLDPVGAGATK Number of specific fragments extracted= 1 number of extra gaps= 0 total=8415 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1v8aA)M1 Warning: unaligning (T0375)A202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)E203 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 68 :DFVLDDLRRYS 1v8aA 2 :KFIIEALKRVR T0375 85 :VFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1v8aA 13 :ERRPLVHNITNFVVMNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSGWR T0375 145 :VKMLQRIDAHNTRQPPEQK 1v8aA 76 :VKATEIANELGKPIVLDPV T0375 166 :VSVEVEKPREELFQLF 1v8aA 95 :GAGATKFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHL 1v8aA 112 :RGVDVLKGNFGEISAL T0375 198 :GF 1v8aA 129 :GE T0375 204 :EALRGLYGRV 1v8aA 145 :EEAKKLTMNA T0375 216 :GAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQG 1v8aA 155 :AREFNTTVAVTGAVDYVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAVT T0375 270 :RSVQEALRFGCQVAGKKCGLQGFD 1v8aA 223 :IAAEKAYEEAKYPGSFHVKLYDWL T0375 294 :GI 1v8aA 248 :RI Number of specific fragments extracted= 10 number of extra gaps= 0 total=8425 Number of alignments=682 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1v8aA)M1 Warning: unaligning (T0375)E203 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 68 :DFVLDDLRRY 1v8aA 2 :KFIIEALKRV T0375 84 :TVFQTTGSVPIATVIINEASGS 1v8aA 12 :RERRPLVHNITNFVVMNTTANA T0375 108 :ILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1v8aA 34 :LLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSG T0375 145 :VKMLQRIDAHNTRQPPEQ 1v8aA 76 :VKATEIANELGKPIVLDP T0375 166 :V 1v8aA 98 :A T0375 170 :VEKPREELFQLF 1v8aA 99 :TKFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHL 1v8aA 112 :RGVDVLKGNFGEISAL T0375 198 :GF 1v8aA 129 :GE T0375 204 :EALRGLYGRV 1v8aA 145 :EEAKKLTMNA T0375 216 :GAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQG 1v8aA 155 :AREFNTTVAVTGAVDYVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAVT T0375 270 :RSVQEALRFGCQVAGKKC 1v8aA 223 :IAAEKAYEEAKYPGSFHV Number of specific fragments extracted= 11 number of extra gaps= 1 total=8436 Number of alignments=683 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1v8aA)M1 T0375 44 :SCTILSLL 1v8aA 4 :IIEALKRV T0375 54 :PCAFMGSMA 1v8aA 15 :RPLVHNITN T0375 64 :GHVADFVLDDLRRYSV 1v8aA 24 :FVVMNTTANALLALGA T0375 82 :RYTVFQTT 1v8aA 40 :SPVMAHAE T0375 103 :S 1v8aA 48 :E T0375 122 :DF 1v8aA 49 :EL T0375 125 :KVDLTQFKWIHIEGRNASEQ 1v8aA 51 :EEMIRLADAVVINIGTLDSG T0375 145 :VKMLQRIDAHNTRQPPEQ 1v8aA 76 :VKATEIANELGKPIVLDP T0375 166 :VSVEVEKPREELFQLF 1v8aA 95 :GAGATKFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHL 1v8aA 112 :RGVDVLKGNFGEISAL T0375 198 :GF 1v8aA 129 :GE T0375 200 :QSAEEALRGLYGRV 1v8aA 145 :EEAKKLTMNAAREF T0375 216 :GAVLVCAWAE 1v8aA 159 :NTTVAVTGAV T0375 228 :ADALG 1v8aA 169 :DYVSD T0375 234 :DGKLLHSDAF 1v8aA 174 :GRRTFAVYNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1v8aA 184 :HELLGRVTGTGCMVAALTGAFVAV T0375 270 :RSVQEALRFGCQVAGKKCGL 1v8aA 208 :TEPLKATTSALVTFGIAAEK T0375 294 :GI 1v8aA 233 :KY Number of specific fragments extracted= 18 number of extra gaps= 0 total=8454 Number of alignments=684 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)S2 because first residue in template chain is (1v8aA)M1 T0375 43 :NSCTILSLL 1v8aA 3 :FIIEALKRV T0375 54 :PCAFMGSMA 1v8aA 15 :RPLVHNITN T0375 64 :GHVADFVLDDLRRYSVDL 1v8aA 24 :FVVMNTTANALLALGASP T0375 84 :TVF 1v8aA 42 :VMA T0375 118 :VSATDFEKV 1v8aA 45 :HAEEELEEM T0375 128 :LTQFKWIHIE 1v8aA 54 :IRLADAVVIN T0375 138 :GRNASEQ 1v8aA 65 :GTLDSGW T0375 145 :VKMLQRIDAHNTRQPPEQ 1v8aA 76 :VKATEIANELGKPIVLDP T0375 163 :KIRVS 1v8aA 95 :GAGAT T0375 171 :EKPREELFQLFGY 1v8aA 100 :KFRTRVSLEILSR T0375 184 :GDVVFVSKDVAKHL 1v8aA 114 :VDVLKGNFGEISAL T0375 198 :GF 1v8aA 129 :GE T0375 200 :QSAEEALRGLYGR 1v8aA 145 :EEAKKLTMNAARE T0375 214 :RKG 1v8aA 158 :FNT T0375 218 :VLVCAW 1v8aA 161 :TVAVTG T0375 226 :EGADALG 1v8aA 167 :AVDYVSD T0375 234 :DGKLLHSDAF 1v8aA 174 :GRRTFAVYNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1v8aA 184 :HELLGRVTGTGCMVAALTGAFVAV T0375 270 :RSVQEALRFGCQVAGKKCGL 1v8aA 208 :TEPLKATTSALVTFGIAAEK T0375 291 :G 1v8aA 232 :A T0375 294 :GI 1v8aA 233 :KY Number of specific fragments extracted= 21 number of extra gaps= 0 total=8475 Number of alignments=685 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)A202 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)E203 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 85 :VFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1v8aA 13 :ERRPLVHNITNFVVMNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSGWR T0375 145 :VKMLQRIDAHNTRQPPEQK 1v8aA 76 :VKATEIANELGKPIVLDPV T0375 166 :VSVEVEKPREELFQLF 1v8aA 95 :GAGATKFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHL 1v8aA 112 :RGVDVLKGNFGEISAL T0375 198 :GF 1v8aA 129 :GE T0375 204 :EALRGLYGRV 1v8aA 145 :EEAKKLTMNA T0375 216 :GAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQ 1v8aA 155 :AREFNTTVAVTGAVDYVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAVTEPLK Number of specific fragments extracted= 7 number of extra gaps= 0 total=8482 Number of alignments=686 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)E203 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 88 :TTGSVPIATVIINEASG 1v8aA 16 :PLVHNITNFVVMNTTAN T0375 107 :TILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASEQ 1v8aA 33 :ALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSG T0375 145 :VKMLQRIDAHNTRQPPEQ 1v8aA 76 :VKATEIANELGKPIVLDP T0375 166 :V 1v8aA 98 :A T0375 170 :VEKPREELFQLF 1v8aA 99 :TKFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHL 1v8aA 112 :RGVDVLKGNFGEISAL T0375 198 :GF 1v8aA 129 :GE T0375 204 :EALRGLYGRV 1v8aA 145 :EEAKKLTMNA T0375 216 :GAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQ 1v8aA 155 :AREFNTTVAVTGAVDYVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAVTEPLK Number of specific fragments extracted= 9 number of extra gaps= 1 total=8491 Number of alignments=687 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set T0375 68 :DFVLDDLRRYSV 1v8aA 28 :NTTANALLALGA T0375 82 :RYTVFQTT 1v8aA 40 :SPVMAHAE T0375 121 :TDF 1v8aA 48 :EEL T0375 125 :KVDLTQFKWIHIEGRNASEQ 1v8aA 51 :EEMIRLADAVVINIGTLDSG T0375 145 :VKMLQRIDAHNTRQPPEQ 1v8aA 76 :VKATEIANELGKPIVLDP T0375 166 :VSVEVEKPREELFQLF 1v8aA 95 :GAGATKFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHL 1v8aA 112 :RGVDVLKGNFGEISAL T0375 198 :GF 1v8aA 129 :GE T0375 200 :QSAEEALRGLYGRV 1v8aA 145 :EEAKKLTMNAAREF T0375 216 :GAVLVCAWAE 1v8aA 159 :NTTVAVTGAV T0375 228 :ADALG 1v8aA 169 :DYVSD T0375 234 :DGKLLHSDAF 1v8aA 174 :GRRTFAVYNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1v8aA 184 :HELLGRVTGTGCMVAALTGAFVAV T0375 270 :RSVQEALRFGCQVAGKKCG 1v8aA 208 :TEPLKATTSALVTFGIAAE Number of specific fragments extracted= 14 number of extra gaps= 0 total=8505 Number of alignments=688 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set T0375 44 :SCTILSLL 1v8aA 4 :IIEALKRV T0375 54 :PCAFMGSMA 1v8aA 15 :RPLVHNITN T0375 64 :GHVADFVLDDLRRYSVDL 1v8aA 24 :FVVMNTTANALLALGASP T0375 84 :TVF 1v8aA 42 :VMA T0375 118 :VSATDFEKV 1v8aA 45 :HAEEELEEM T0375 128 :LTQFKWIHIE 1v8aA 54 :IRLADAVVIN T0375 138 :GRNASEQ 1v8aA 65 :GTLDSGW T0375 145 :VKMLQRIDAHNTRQPPEQ 1v8aA 76 :VKATEIANELGKPIVLDP T0375 163 :KIRVS 1v8aA 95 :GAGAT T0375 171 :EKPREELFQLFGY 1v8aA 100 :KFRTRVSLEILSR T0375 184 :GDVVFVSKDVAKHL 1v8aA 114 :VDVLKGNFGEISAL T0375 198 :GF 1v8aA 129 :GE T0375 200 :QSAEEALRGLYGR 1v8aA 145 :EEAKKLTMNAARE T0375 214 :RKG 1v8aA 158 :FNT T0375 218 :VLVCAW 1v8aA 161 :TVAVTG T0375 226 :EGADALG 1v8aA 167 :AVDYVSD T0375 234 :DGKLLHSDAF 1v8aA 174 :GRRTFAVYNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1v8aA 184 :HELLGRVTGTGCMVAALTGAFVAV T0375 270 :RSVQEALRFGCQVAGKKCG 1v8aA 208 :TEPLKATTSALVTFGIAAE Number of specific fragments extracted= 19 number of extra gaps= 0 total=8524 Number of alignments=689 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)A202 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 1 :G 1v8aA 1 :M T0375 68 :DFVLDDLRRYS 1v8aA 2 :KFIIEALKRVR T0375 85 :VFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1v8aA 13 :ERRPLVHNITNFVVMNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSG T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1v8aA 74 :SMVKATEIANELGKPIVLDP T0375 163 :KIRVS 1v8aA 95 :GAGAT T0375 171 :EKPREELFQLF 1v8aA 100 :KFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHL 1v8aA 112 :RGVDVLKGNFGEISAL T0375 198 :GFQ 1v8aA 129 :GEE T0375 203 :EEALRGLYGRVRKGA 1v8aA 145 :EEAKKLTMNAAREFN T0375 218 :VLVCA 1v8aA 161 :TVAVT T0375 227 :GADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSL 1v8aA 166 :GAVDYVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFV T0375 267 :SQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1v8aA 220 :TFGIAAEKAYEEAKYPGSFHVKLYDWLYRI Number of specific fragments extracted= 12 number of extra gaps= 0 total=8536 Number of alignments=690 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)A202 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 1 :GS 1v8aA 1 :MK T0375 69 :FVLDDLRRYS 1v8aA 3 :FIIEALKRVR T0375 85 :VFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1v8aA 13 :ERRPLVHNITNFVVMNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSG T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1v8aA 74 :SMVKATEIANELGKPIVLDP T0375 163 :KIRVS 1v8aA 95 :GAGAT T0375 171 :EKPREELFQLF 1v8aA 100 :KFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHL 1v8aA 112 :RGVDVLKGNFGEISAL T0375 198 :GFQ 1v8aA 129 :GEE T0375 203 :EEALRGLYGRVRKGA 1v8aA 145 :EEAKKLTMNAAREFN T0375 218 :VLVCA 1v8aA 161 :TVAVT T0375 227 :GADALGPDG 1v8aA 166 :GAVDYVSDG T0375 237 :LLHSDAFP 1v8aA 175 :RRTFAVYN T0375 245 :PPRVVDTLGAGDTFNASVIFSL 1v8aA 184 :HELLGRVTGTGCMVAALTGAFV T0375 267 :SQGRSVQEALRFGCQVAGKKCGLQGFDGIV 1v8aA 220 :TFGIAAEKAYEEAKYPGSFHVKLYDWLYRI Number of specific fragments extracted= 14 number of extra gaps= 0 total=8550 Number of alignments=691 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)A202 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 1 :G 1v8aA 1 :M T0375 44 :SCTILSLL 1v8aA 4 :IIEALKRV T0375 54 :PCA 1v8aA 15 :RPL T0375 58 :MGSMAPGHVADFVLDDLRRYSV 1v8aA 18 :VHNITNFVVMNTTANALLALGA T0375 82 :RYTVFQTT 1v8aA 40 :SPVMAHAE T0375 121 :TDFEK 1v8aA 48 :EELEE T0375 127 :DLTQFKWIHIEGRNAS 1v8aA 53 :MIRLADAVVINIGTLD T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1v8aA 74 :SMVKATEIANELGKPIVLDP T0375 163 :KIRVS 1v8aA 95 :GAGAT T0375 171 :EKPREELFQLF 1v8aA 100 :KFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHL 1v8aA 112 :RGVDVLKGNFGEISAL T0375 198 :G 1v8aA 129 :G T0375 203 :EEALRGLYGRVRK 1v8aA 145 :EEAKKLTMNAARE T0375 216 :GAVLVCAWAE 1v8aA 159 :NTTVAVTGAV T0375 228 :ADALGPD 1v8aA 169 :DYVSDGR T0375 236 :KLLHSDAF 1v8aA 176 :RTFAVYNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1v8aA 184 :HELLGRVTGTGCMVAALTGAFVAV T0375 270 :RSVQEALRFGCQVAGKKCGL 1v8aA 208 :TEPLKATTSALVTFGIAAEK Number of specific fragments extracted= 18 number of extra gaps= 0 total=8568 Number of alignments=692 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)A41 because first residue in template chain is (1v8aA)M1 Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)A202 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 42 :SNSCTILSLL 1v8aA 2 :KFIIEALKRV T0375 54 :PCAFMGSMAP 1v8aA 15 :RPLVHNITNF T0375 65 :HVADFVLDDLRRYSVDLRY 1v8aA 25 :VVMNTTANALLALGASPVM T0375 117 :DVSATDFEKV 1v8aA 44 :AHAEEELEEM T0375 128 :LTQFKWIHIEGRNA 1v8aA 54 :IRLADAVVINIGTL T0375 142 :S 1v8aA 69 :S T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1v8aA 74 :SMVKATEIANELGKPIVLDP T0375 163 :KIRVS 1v8aA 95 :GAGAT T0375 171 :EKPREELFQLF 1v8aA 100 :KFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHL 1v8aA 112 :RGVDVLKGNFGEISAL T0375 198 :G 1v8aA 129 :G T0375 203 :EEALRGLYGRVRK 1v8aA 145 :EEAKKLTMNAARE T0375 216 :GAVLVCAW 1v8aA 159 :NTTVAVTG T0375 226 :EGADALGPD 1v8aA 167 :AVDYVSDGR T0375 236 :KLLHSDAF 1v8aA 176 :RTFAVYNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1v8aA 184 :HELLGRVTGTGCMVAALTGAFVAV T0375 270 :RSVQEALRFGCQVAGKKCGL 1v8aA 208 :TEPLKATTSALVTFGIAAEK Number of specific fragments extracted= 17 number of extra gaps= 0 total=8585 Number of alignments=693 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)A202 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 94 :IATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1v8aA 22 :TNFVVMNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSG T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1v8aA 74 :SMVKATEIANELGKPIVLDP T0375 163 :KIRVS 1v8aA 95 :GAGAT T0375 171 :EKPREELFQLF 1v8aA 100 :KFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHL 1v8aA 112 :RGVDVLKGNFGEISAL T0375 198 :GFQ 1v8aA 129 :GEE T0375 203 :EEALRGLYGRVRKGA 1v8aA 145 :EEAKKLTMNAAREFN T0375 218 :VLVCA 1v8aA 161 :TVAVT T0375 227 :GADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQ 1v8aA 166 :GAVDYVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAVTEPLK Number of specific fragments extracted= 9 number of extra gaps= 0 total=8594 Number of alignments=694 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)A202 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 95 :ATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNAS 1v8aA 23 :NFVVMNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSG T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1v8aA 74 :SMVKATEIANELGKPIVLDP T0375 163 :KIRVS 1v8aA 95 :GAGAT T0375 171 :EKPREELFQLF 1v8aA 100 :KFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHL 1v8aA 112 :RGVDVLKGNFGEISAL T0375 198 :GFQ 1v8aA 129 :GEE T0375 203 :EEALRGLYGRVRKGA 1v8aA 145 :EEAKKLTMNAAREFN T0375 218 :VLVCA 1v8aA 161 :TVAVT T0375 227 :GADALGPDG 1v8aA 166 :GAVDYVSDG T0375 237 :LLHSDAFP 1v8aA 175 :RRTFAVYN T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQGRSVQ 1v8aA 184 :HELLGRVTGTGCMVAALTGAFVAVTEPLK Number of specific fragments extracted= 11 number of extra gaps= 0 total=8605 Number of alignments=695 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)A202 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 57 :FMGSMAPGHVADFVLDDLRRYSV 1v8aA 17 :LVHNITNFVVMNTTANALLALGA T0375 82 :RYTVFQTT 1v8aA 40 :SPVMAHAE T0375 121 :TDFEK 1v8aA 48 :EELEE T0375 127 :DLTQFKWIHIEGRNAS 1v8aA 53 :MIRLADAVVINIGTLD T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1v8aA 74 :SMVKATEIANELGKPIVLDP T0375 163 :KIRVS 1v8aA 95 :GAGAT T0375 171 :EKPREELFQLF 1v8aA 100 :KFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHL 1v8aA 112 :RGVDVLKGNFGEISAL T0375 198 :G 1v8aA 129 :G T0375 203 :EEALRGLYGRVRK 1v8aA 145 :EEAKKLTMNAARE T0375 216 :GAVLVCAWAE 1v8aA 159 :NTTVAVTGAV T0375 228 :ADALGPD 1v8aA 169 :DYVSDGR T0375 236 :KLLHSDAF 1v8aA 176 :RTFAVYNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1v8aA 184 :HELLGRVTGTGCMVAALTGAFVAV T0375 270 :RSVQEALRFGCQVAGKKCGL 1v8aA 208 :TEPLKATTSALVTFGIAAEK Number of specific fragments extracted= 15 number of extra gaps= 0 total=8620 Number of alignments=696 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)A202 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 54 :PCAFMGSMAP 1v8aA 15 :RPLVHNITNF T0375 65 :HVADFVLDDLRRYSVDLRY 1v8aA 25 :VVMNTTANALLALGASPVM T0375 117 :DVSATDFEKV 1v8aA 44 :AHAEEELEEM T0375 128 :LTQFKWIHIEGRNA 1v8aA 54 :IRLADAVVINIGTL T0375 142 :S 1v8aA 69 :S T0375 143 :EQVKMLQRIDAHNTRQPPEQ 1v8aA 74 :SMVKATEIANELGKPIVLDP T0375 163 :KIRVS 1v8aA 95 :GAGAT T0375 171 :EKPREELFQLF 1v8aA 100 :KFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHL 1v8aA 112 :RGVDVLKGNFGEISAL T0375 198 :G 1v8aA 129 :G T0375 203 :EEALRGLYGRVRK 1v8aA 145 :EEAKKLTMNAARE T0375 216 :GAVLVCAW 1v8aA 159 :NTTVAVTG T0375 226 :EGADALGPD 1v8aA 167 :AVDYVSDGR T0375 236 :KLLHSDAF 1v8aA 176 :RTFAVYNG T0375 245 :PPRVVDTLGAGDTFNASVIFSLSQ 1v8aA 184 :HELLGRVTGTGCMVAALTGAFVAV T0375 270 :RSVQEALRFGCQVAGKKCG 1v8aA 208 :TEPLKATTSALVTFGIAAE Number of specific fragments extracted= 16 number of extra gaps= 0 total=8636 Number of alignments=697 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)A67 because first residue in template chain is (1v8aA)M1 Warning: unaligning (T0375)E204 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)A205 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 68 :DFVLDDLRR 1v8aA 2 :KFIIEALKR T0375 85 :VFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 1v8aA 11 :VRERRPLVHNITNFVVMNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDS T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLF 1v8aA 73 :RSMVKATEIANELGKPIVLDPVGAGATKFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHLGFQ 1v8aA 112 :RGVDVLKGNFGEISALLGE T0375 206 :LRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSL 1v8aA 145 :EEAKKLTMNAAREFNTTVAVTGAVDYVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFV T0375 267 :SQGRSVQEALRFGCQVAGKKCGLQGF 1v8aA 220 :TFGIAAEKAYEEAKYPGSFHVKLYDW Number of specific fragments extracted= 6 number of extra gaps= 0 total=8642 Number of alignments=698 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)E204 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)A205 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 1 :G 1v8aA 1 :M T0375 68 :DFVLDDLRRYSVDLRYT 1v8aA 2 :KFIIEALKRVRERRPLV T0375 89 :TGSVPIATV 1v8aA 19 :HNITNFVVM T0375 102 :ASGSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 1v8aA 28 :NTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDS T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1v8aA 73 :RSMVKATEIANELGKPIVLDPVGA T0375 174 :REELFQLF 1v8aA 103 :TRVSLEIL T0375 182 :GYGDVVFVSKDVAKHLGFQ 1v8aA 112 :RGVDVLKGNFGEISALLGE T0375 206 :LRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFS 1v8aA 145 :EEAKKLTMNAAREFNTTVAVTGAVDYVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAF T0375 267 :SQGRSVQEALRFGCQVAGKKCGLQG 1v8aA 220 :TFGIAAEKAYEEAKYPGSFHVKLYD Number of specific fragments extracted= 9 number of extra gaps= 0 total=8651 Number of alignments=699 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 1 :G 1v8aA 1 :M T0375 43 :NSCTILSLL 1v8aA 3 :FIIEALKRV T0375 52 :GAPCAFMG 1v8aA 15 :RPLVHNIT T0375 63 :PGHVADFVLDDLRRYSVDLRYTVFQ 1v8aA 23 :NFVVMNTTANALLALGASPVMAHAE T0375 122 :DFEKVDLTQFKWIHIEGRNASE 1v8aA 48 :EELEEMIRLADAVVINIGTLDS T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLF 1v8aA 73 :RSMVKATEIANELGKPIVLDPVGAGATKFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHLGFQ 1v8aA 112 :RGVDVLKGNFGEISALLGE T0375 202 :AEEALRGLYGRVRKGAVLVCAWA 1v8aA 145 :EEAKKLTMNAAREFNTTVAVTGA T0375 228 :ADALGPDGKLLHSDAFPP 1v8aA 168 :VDYVSDGRRTFAVYNGHE T0375 250 :DTLGAG 1v8aA 189 :RVTGTG T0375 257 :TFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1v8aA 195 :CMVAALTGAFVAVTEPLKATTSALVTFGIAAEK Number of specific fragments extracted= 11 number of extra gaps= 1 total=8662 Number of alignments=700 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)A202 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 1 :G 1v8aA 1 :M T0375 43 :NSCTILSLL 1v8aA 3 :FIIEALKRV T0375 52 :GAPCAFMGS 1v8aA 15 :RPLVHNITN T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTT 1v8aA 24 :FVVMNTTANALLALGASPVMAHAEEE T0375 123 :F 1v8aA 50 :L T0375 125 :KVDLTQFKWIHIEGRNASE 1v8aA 51 :EEMIRLADAVVINIGTLDS T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLF 1v8aA 73 :RSMVKATEIANELGKPIVLDPVGAGATKFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHLGFQ 1v8aA 112 :RGVDVLKGNFGEISALLGE T0375 203 :EEALRGLYGRVR 1v8aA 145 :EEAKKLTMNAAR T0375 215 :KG 1v8aA 159 :NT T0375 218 :VLVCA 1v8aA 161 :TVAVT T0375 225 :EEGADALGPDGK 1v8aA 166 :GAVDYVSDGRRT T0375 238 :LHSDAFPP 1v8aA 178 :FAVYNGHE T0375 251 :TLGAG 1v8aA 190 :VTGTG T0375 257 :TFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1v8aA 195 :CMVAALTGAFVAVTEPLKATTSALVTFGIAAEK Number of specific fragments extracted= 15 number of extra gaps= 0 total=8677 Number of alignments=701 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)E204 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)A205 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 108 :ILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 1v8aA 34 :LLALGASPVMAHAEEELEEMIRLADAVVINIGTLDS T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLF 1v8aA 73 :RSMVKATEIANELGKPIVLDPVGAGATKFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHLGFQ 1v8aA 112 :RGVDVLKGNFGEISALLGE T0375 206 :LRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNA 1v8aA 145 :EEAKKLTMNAAREFNTTVAVTGAVDYVSDGRRTFAVYNGHELLGRVTGTGCMVAA Number of specific fragments extracted= 4 number of extra gaps= 0 total=8681 Number of alignments=702 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)E204 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)A205 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 108 :ILYYDRSLPDVSATDFEKVDLTQFKWIHIEGRNASE 1v8aA 34 :LLALGASPVMAHAEEELEEMIRLADAVVINIGTLDS T0375 150 :RIDAHNTRQPPEQKIRVSVEVEKP 1v8aA 73 :RSMVKATEIANELGKPIVLDPVGA T0375 174 :REELFQLF 1v8aA 103 :TRVSLEIL T0375 182 :GYGDVVFVSKDVAKHLGFQ 1v8aA 112 :RGVDVLKGNFGEISALLGE T0375 206 :LRGLYGRVRKGAVLVCAWAEEGADALGPDGK 1v8aA 145 :EEAKKLTMNAAREFNTTVAVTGAVDYVSDGR Number of specific fragments extracted= 5 number of extra gaps= 0 total=8686 Number of alignments=703 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 119 :SATDFEKVDLTQFKWIHIEGRNASE 1v8aA 45 :HAEEELEEMIRLADAVVINIGTLDS T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLF 1v8aA 73 :RSMVKATEIANELGKPIVLDPVGAGATKFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHLGFQ 1v8aA 112 :RGVDVLKGNFGEISALLGE T0375 202 :AEEALRGLYGRVRKGAVLVCAWA 1v8aA 145 :EEAKKLTMNAAREFNTTVAVTGA T0375 228 :ADALGPDGKLLHSDAFPP 1v8aA 168 :VDYVSDGRRTFAVYNGHE T0375 250 :DTLGAG 1v8aA 189 :RVTGTG T0375 257 :TFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1v8aA 195 :CMVAALTGAFVAVTEPLKATTSALVTFGIAAEK Number of specific fragments extracted= 7 number of extra gaps= 1 total=8693 Number of alignments=704 # 1v8aA read from 1v8aA/merged-a2m # found chain 1v8aA in template set Warning: unaligning (T0375)S201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1v8aA)G143 Warning: unaligning (T0375)A202 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1v8aA)E144 T0375 44 :SCTILSLL 1v8aA 4 :IIEALKRV T0375 52 :GAPCAFMGS 1v8aA 15 :RPLVHNITN T0375 64 :GHVADFVLDDLRRYSVDLRYTVFQTT 1v8aA 24 :FVVMNTTANALLALGASPVMAHAEEE T0375 123 :F 1v8aA 50 :L T0375 125 :KVDLTQFKWIHIEGRNASE 1v8aA 51 :EEMIRLADAVVINIGTLDS T0375 144 :QVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLF 1v8aA 73 :RSMVKATEIANELGKPIVLDPVGAGATKFRTRVSLEIL T0375 182 :GYGDVVFVSKDVAKHLGFQ 1v8aA 112 :RGVDVLKGNFGEISALLGE T0375 203 :EEALRGLYGRVR 1v8aA 145 :EEAKKLTMNAAR T0375 215 :KG 1v8aA 159 :NT T0375 218 :VLVCA 1v8aA 161 :TVAVT T0375 225 :EEGADALGPDGK 1v8aA 166 :GAVDYVSDGRRT T0375 238 :LHSDAFPP 1v8aA 178 :FAVYNGHE T0375 251 :TLGAG 1v8aA 190 :VTGTG T0375 257 :TFNASVIFSLSQGRSVQEALRFGCQVAGKKCGL 1v8aA 195 :CMVAALTGAFVAVTEPLKATTSALVTFGIAAEK Number of specific fragments extracted= 14 number of extra gaps= 0 total=8707 Number of alignments=705 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2liv/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2liv expands to /projects/compbio/data/pdb/2liv.pdb.gz 2liv:Warning: there is no chain 2liv will retry with 2livA # T0375 read from 2liv/merged-a2m # 2liv read from 2liv/merged-a2m # adding 2liv to template set # found chain 2liv in template set Warning: unaligning (T0375)A56 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)K48 Warning: unaligning (T0375)F57 because of BadResidue code BAD_PEPTIDE at template residue (2liv)K48 Warning: unaligning (T0375)G59 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)D51 Warning: unaligning (T0375)S60 because of BadResidue code BAD_PEPTIDE at template residue (2liv)D51 Warning: unaligning (T0375)M61 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)C53 Warning: unaligning (T0375)A62 because of BadResidue code BAD_PEPTIDE at template residue (2liv)C53 Warning: unaligning (T0375)R75 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)N67 Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)T118 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (2liv)T118 Warning: unaligning (T0375)F86 because of BadResidue code BAD_PEPTIDE at template residue (2liv)G119 Warning: unaligning (T0375)I99 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)L133 Warning: unaligning (T0375)N100 because of BadResidue code BAD_PEPTIDE at template residue (2liv)L133 Warning: unaligning (T0375)L209 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)N166 Warning: unaligning (T0375)Y210 because of BadResidue code BAD_PEPTIDE at template residue (2liv)N166 Warning: unaligning (T0375)G211 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)N168 Warning: unaligning (T0375)R212 because of BadResidue code BAD_PEPTIDE at template residue (2liv)N168 Warning: unaligning (T0375)V248 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)S232 Warning: unaligning (T0375)V249 because of BadResidue code BAD_PEPTIDE at template residue (2liv)S232 Warning: unaligning (T0375)G255 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)E239 Warning: unaligning (T0375)D256 because of BadResidue code BAD_PEPTIDE at template residue (2liv)E239 Warning: unaligning (T0375)G284 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)Q293 Warning: unaligning (T0375)K285 because of BadResidue code BAD_PEPTIDE at template residue (2liv)Q293 T0375 52 :GAPC 2liv 43 :KLQI T0375 58 :M 2liv 49 :Y T0375 63 :PGHVADFVLDDL 2liv 54 :DPKQAVAVANKV T0375 76 :RYSV 2liv 110 :GYQL T0375 81 :LRY 2liv 114 :ILR T0375 87 :QTTGSVPIATVI 2liv 120 :LDSDQGPTAAKY T0375 101 :EASGS 2liv 134 :EKVKP T0375 186 :VVFVSK 2liv 141 :IAIVHD T0375 195 :KHLGFQSAEEALRG 2liv 151 :GEGLARAVQDGLKK T0375 213 :V 2liv 169 :V T0375 215 :KGAVLVCAW 2liv 193 :NIDFVYYGG T0375 226 :EGADALGPDGKLLHSDA 2liv 211 :RQARAAGLKTQFMGPEG T0375 245 :PPR 2liv 228 :VAN T0375 250 :DTLGA 2liv 233 :LSNIA T0375 257 :TFNASVI 2liv 240 :SAEGLLV T0375 265 :S 2liv 248 :K T0375 267 :SQGRSVQEALRFGCQVA 2liv 275 :AFVWTTYAALQSLQAGL Number of specific fragments extracted= 17 number of extra gaps= 9 total=8724 Number of alignments=706 # 2liv read from 2liv/merged-a2m # found chain 2liv in template set Warning: unaligning (T0375)V10 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)K48 Warning: unaligning (T0375)V11 because of BadResidue code BAD_PEPTIDE at template residue (2liv)K48 Warning: unaligning (T0375)D13 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)D51 Warning: unaligning (T0375)V14 because of BadResidue code BAD_PEPTIDE at template residue (2liv)D51 Warning: unaligning (T0375)I15 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)C53 Warning: unaligning (T0375)S16 because of BadResidue code BAD_PEPTIDE at template residue (2liv)C53 Warning: unaligning (T0375)R29 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)N67 Warning: unaligning (T0375)L209 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)N166 Warning: unaligning (T0375)Y210 because of BadResidue code BAD_PEPTIDE at template residue (2liv)N166 Warning: unaligning (T0375)G211 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)N168 Warning: unaligning (T0375)R212 because of BadResidue code BAD_PEPTIDE at template residue (2liv)N168 Warning: unaligning (T0375)V248 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)S232 Warning: unaligning (T0375)V249 because of BadResidue code BAD_PEPTIDE at template residue (2liv)S232 Warning: unaligning (T0375)G255 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)E239 Warning: unaligning (T0375)D256 because of BadResidue code BAD_PEPTIDE at template residue (2liv)E239 Warning: unaligning (T0375)G284 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)Q293 T0375 8 :GL 2liv 45 :QI T0375 12 :L 2liv 49 :Y T0375 17 :LVDKYPKEDSEI 2liv 54 :DPKQAVAVANKV T0375 195 :KHLGFQSAEEALRG 2liv 151 :GEGLARAVQDGLKK T0375 213 :V 2liv 169 :V T0375 215 :KGAVLVCAW 2liv 193 :NIDFVYYGG T0375 226 :EGADALGPDGKLLHSDA 2liv 211 :RQARAAGLKTQFMGPEG T0375 245 :PPR 2liv 228 :VAN T0375 250 :DTLGA 2liv 233 :LSNIA T0375 257 :TFNASVIF 2liv 240 :SAEGLLVT T0375 268 :QGRSVQEALRFGCQVA 2liv 276 :FVWTTYAALQSLQAGL Number of specific fragments extracted= 11 number of extra gaps= 7 total=8735 Number of alignments=707 # 2liv read from 2liv/merged-a2m # found chain 2liv in template set Warning: unaligning (T0375)Q3 because first residue in template chain is (2liv)E1 Warning: unaligning (T0375)I4 because of BadResidue code BAD_PEPTIDE at template residue (2liv)D2 Warning: unaligning (T0375)V11 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)A10 Warning: unaligning (T0375)L12 because of BadResidue code BAD_PEPTIDE at template residue (2liv)A10 Warning: unaligning (T0375)D13 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)S12 Warning: unaligning (T0375)C45 because of BadResidue code BAD_PEPTIDE at template residue (2liv)S12 Warning: unaligning (T0375)Y83 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)T118 Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE at template residue (2liv)T118 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (2liv)G119 Warning: unaligning (T0375)I98 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)L133 Warning: unaligning (T0375)I99 because of BadResidue code BAD_PEPTIDE at template residue (2liv)L133 Warning: unaligning (T0375)V126 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)N168 Warning: unaligning (T0375)D127 because of BadResidue code BAD_PEPTIDE at template residue (2liv)N168 Warning: unaligning (T0375)Q130 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)F172 Warning: unaligning (T0375)F131 because of BadResidue code BAD_PEPTIDE at template residue (2liv)F172 Warning: unaligning (T0375)Q200 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)K191 Warning: unaligning (T0375)S201 because of BadResidue code BAD_PEPTIDE at template residue (2liv)K191 Warning: unaligning (T0375)P246 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)S232 Warning: unaligning (T0375)R247 because of BadResidue code BAD_PEPTIDE at template residue (2liv)S232 Warning: unaligning (T0375)G255 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)E239 Warning: unaligning (T0375)D256 because of BadResidue code BAD_PEPTIDE at template residue (2liv)E239 Warning: unaligning (T0375)G269 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)D253 Warning: unaligning (T0375)Q273 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)Q293 Warning: unaligning (T0375)E274 because of BadResidue code BAD_PEPTIDE at template residue (2liv)Q293 Warning: unaligning (T0375)I295 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)M313 Warning: unaligning (T0375)V296 because of BadResidue code BAD_PEPTIDE at template residue (2liv)M313 T0375 5 :LCVGLV 2liv 3 :IKVAVV T0375 46 :TILSLLGAPCAFMGSMAPGH 2liv 13 :GPVAQYGDQEFTGAEQAVAD T0375 66 :VADFVLDDLR 2liv 101 :ATAPELTARG T0375 77 :YSVDLR 2liv 111 :YQLILR T0375 86 :FQTTGSVPIATV 2liv 120 :LDSDQGPTAAKY T0375 100 :NEASGSRTILYY 2liv 134 :EKVKPQRIAIVH T0375 112 :DRSLPDVSATDFEK 2liv 147 :KQQYGEGLARAVQD T0375 128 :LT 2liv 169 :VV T0375 132 :KWIHI 2liv 173 :DGITA T0375 140 :NASEQVKMLQRI 2liv 178 :GEKDFSTLVARL T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGA 2liv 192 :ENIDFVYYGGYHPEMGQILRQARAAGL T0375 234 :DGKLLHSDAFPP 2liv 219 :KTQFMGPEGVAN T0375 248 :VVDT 2liv 233 :LSNI T0375 254 :A 2liv 237 :A T0375 257 :TFNASVIFSLSQ 2liv 240 :SAEGLLVTKPKN T0375 270 :RSV 2liv 289 :AGL T0375 275 :AL 2liv 294 :SD T0375 278 :FGCQVAGKKCGLQ 2liv 296 :DPAEIAKYLKANS T0375 292 :FDG 2liv 309 :VDT Number of specific fragments extracted= 19 number of extra gaps= 11 total=8754 Number of alignments=708 # 2liv read from 2liv/merged-a2m # found chain 2liv in template set Warning: unaligning (T0375)Q3 because first residue in template chain is (2liv)E1 Warning: unaligning (T0375)I4 because of BadResidue code BAD_PEPTIDE at template residue (2liv)D2 Warning: unaligning (T0375)V11 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)A10 Warning: unaligning (T0375)L12 because of BadResidue code BAD_PEPTIDE at template residue (2liv)A10 Warning: unaligning (T0375)D13 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)S12 Warning: unaligning (T0375)C45 because of BadResidue code BAD_PEPTIDE at template residue (2liv)S12 Warning: unaligning (T0375)T84 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)K48 Warning: unaligning (T0375)V85 because of BadResidue code BAD_PEPTIDE at template residue (2liv)K48 Warning: unaligning (T0375)Q87 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)D51 Warning: unaligning (T0375)T88 because of BadResidue code BAD_PEPTIDE at template residue (2liv)D51 Warning: unaligning (T0375)T89 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)C53 Warning: unaligning (T0375)G90 because of BadResidue code BAD_PEPTIDE at template residue (2liv)C53 Warning: unaligning (T0375)S103 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)N67 Warning: unaligning (T0375)G104 because of BadResidue code BAD_PEPTIDE at template residue (2liv)N67 Warning: unaligning (T0375)D127 because of BadResidue code BAD_PEPTIDE at template residue (2liv)N168 Warning: unaligning (T0375)Q130 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)F172 Warning: unaligning (T0375)F131 because of BadResidue code BAD_PEPTIDE at template residue (2liv)F172 Warning: unaligning (T0375)Q200 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)K191 Warning: unaligning (T0375)S201 because of BadResidue code BAD_PEPTIDE at template residue (2liv)K191 Warning: unaligning (T0375)P246 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)S232 Warning: unaligning (T0375)R247 because of BadResidue code BAD_PEPTIDE at template residue (2liv)S232 Warning: unaligning (T0375)G255 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)E239 Warning: unaligning (T0375)D256 because of BadResidue code BAD_PEPTIDE at template residue (2liv)E239 Warning: unaligning (T0375)G269 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)D253 Warning: unaligning (T0375)Q273 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)Q293 Warning: unaligning (T0375)E274 because of BadResidue code BAD_PEPTIDE at template residue (2liv)Q293 Warning: unaligning (T0375)I295 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)M313 T0375 5 :LCVGLV 2liv 3 :IKVAVV T0375 46 :TILSLLGAPCAFMGSMAPGHVAD 2liv 13 :GPVAQYGDQEFTGAEQAVADINA T0375 73 :DLRRYSVDLRY 2liv 36 :KGGIKGNKLQI T0375 86 :F 2liv 49 :Y T0375 91 :SVPIATVIINEA 2liv 54 :DPKQAVAVANKV T0375 105 :SR 2liv 139 :QR T0375 107 :TILYYDRSLPDVSATDFEKV 2liv 142 :AIVHDKQQYGEGLARAVQDG T0375 128 :LT 2liv 169 :VV T0375 132 :KWIHI 2liv 173 :DGITA T0375 140 :NASEQVKMLQRI 2liv 178 :GEKDFSTLVARL T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGA 2liv 192 :ENIDFVYYGGYHPEMGQILRQARAAGL T0375 234 :DGKLLHSDAFPP 2liv 219 :KTQFMGPEGVAN T0375 248 :VVDT 2liv 233 :LSNI T0375 254 :A 2liv 237 :A T0375 257 :TFNASVIFSLSQ 2liv 240 :SAEGLLVTKPKN T0375 270 :RSV 2liv 289 :AGL T0375 275 :AL 2liv 294 :SD T0375 278 :FGCQVAGKKCGLQ 2liv 296 :DPAEIAKYLKANS T0375 292 :FDG 2liv 309 :VDT Number of specific fragments extracted= 19 number of extra gaps= 12 total=8773 Number of alignments=709 # 2liv read from 2liv/merged-a2m # found chain 2liv in template set Warning: unaligning (T0375)P246 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)S232 Warning: unaligning (T0375)R247 because of BadResidue code BAD_PEPTIDE at template residue (2liv)S232 Warning: unaligning (T0375)G255 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)E239 Warning: unaligning (T0375)D256 because of BadResidue code BAD_PEPTIDE at template residue (2liv)E239 T0375 209 :LYGRVRKGAVLVCAWAEEGA 2liv 199 :YGGYHPEMGQILRQARAAGL T0375 234 :DGKLLHSDAFPP 2liv 219 :KTQFMGPEGVAN T0375 248 :VVDT 2liv 233 :LSNI T0375 254 :A 2liv 237 :A T0375 257 :TFNASVIFSL 2liv 240 :SAEGLLVTKP Number of specific fragments extracted= 5 number of extra gaps= 2 total=8778 Number of alignments=710 # 2liv read from 2liv/merged-a2m # found chain 2liv in template set Warning: unaligning (T0375)I98 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)L133 Warning: unaligning (T0375)I99 because of BadResidue code BAD_PEPTIDE at template residue (2liv)L133 Warning: unaligning (T0375)D127 because of BadResidue code BAD_PEPTIDE at template residue (2liv)N168 Warning: unaligning (T0375)Q130 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)F172 Warning: unaligning (T0375)F131 because of BadResidue code BAD_PEPTIDE at template residue (2liv)F172 Warning: unaligning (T0375)Q200 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)K191 Warning: unaligning (T0375)S201 because of BadResidue code BAD_PEPTIDE at template residue (2liv)K191 Warning: unaligning (T0375)P246 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)S232 Warning: unaligning (T0375)R247 because of BadResidue code BAD_PEPTIDE at template residue (2liv)S232 Warning: unaligning (T0375)G255 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)E239 Warning: unaligning (T0375)D256 because of BadResidue code BAD_PEPTIDE at template residue (2liv)E239 Warning: unaligning (T0375)G269 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)D253 T0375 91 :SVPIATV 2liv 125 :GPTAAKY T0375 100 :NEASGSR 2liv 134 :EKVKPQR T0375 107 :TILYYDRSLPDVSATDFEKV 2liv 142 :AIVHDKQQYGEGLARAVQDG T0375 128 :LT 2liv 169 :VV T0375 132 :KWIHI 2liv 173 :DGITA T0375 140 :NASEQVKMLQRI 2liv 178 :GEKDFSTLVARL T0375 202 :AEEALRGLYGRVRKGAVLVCAWAEEGA 2liv 192 :ENIDFVYYGGYHPEMGQILRQARAAGL T0375 234 :DGKLLHSDAFPP 2liv 219 :KTQFMGPEGVAN T0375 248 :VVDT 2liv 233 :LSNI T0375 254 :A 2liv 237 :A T0375 257 :TFNASVIFSLSQ 2liv 240 :SAEGLLVTKPKN Number of specific fragments extracted= 11 number of extra gaps= 7 total=8789 Number of alignments=711 # 2liv read from 2liv/merged-a2m # found chain 2liv in template set Warning: unaligning (T0375)S16 because of BadResidue code BAD_PEPTIDE in next template residue (2liv)K48 Warning: unaligning (T0375)L17 because of BadResidue code BAD_PEPTIDE at templat