# List of top-scoring protein chains for T0363.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rwsA 77 3.54e-01 d.15.3.2 97991 1vjkA 98 3.80e-01 d.15.3.1 108631 2d04B 114 4.29e-01 2cfeA 162 1.06e+00 1wmzA 140 1.65e+00 d.169.1.1 109422 1r7sA 106 2.91e+00 d.15.4.1 97207 1xlqA 106 2.96e+00 1pdxA 106 3.02e+00 1ayfA d.15.4.1 37682 1put 106 3.31e+00 1ayfA d.15.4.1 37680 1oqqA 106 3.55e+00 d.15.4.1 93422 1gpx 106 3.64e+00 1ayfA d.15.4.1 37681 2fgtA 417 4.20e+00 1frrA 95 4.35e+00 1awd d.15.4.1 37674 1wk9A 146 4.48e+00 1wkaA 147 4.50e+00 8i1b 152 4.67e+00 2i1b b.42.1.2 25550 1i7bA 267 6.88e+00 1jenA 1jenA 267 7.66e+00 1jenA 1jl0A 334 8.26e+00 1jenA d.156.1.1 63155 2ghiA 260 8.34e+00 1f1uA 323 9.25e+00 d.32.1.3,d.32.1.3 83200,83201 1msvA 354 9.26e+00 d.156.1.1 85094 1f1xA 322 1.04e+01 d.32.1.3,d.32.1.3 83208,83209 1q0cA 365 1.11e+01 d.32.1.3,d.32.1.3 88343,88344 1z3aA 168 1.13e+01 1ekeA 230 1.18e+01 1ekeA c.55.3.1 33572 1uksA 686 1.27e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 99517,99518,99519,99520 1wf8A 107 1.51e+01 1oedE 260 1.53e+01 f.36.1.1 86915 1ub0A 258 1.62e+01 c.72.1.2 88394 1vckA 115 1.68e+01 1zba2 218 1.73e+01 2f4pA 147 1.92e+01 1d7fA 686 1.92e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21848,22517,27755,28742 1pamA 686 1.93e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1v3jA 686 1.93e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 108305,108306,108307,108308 1v3kA 686 1.93e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 108313,108314,108315,108316 1uktA 686 1.94e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 99525,99526,99527,99528 2bbvA 363 2.09e+01 2bbvA b.121.4.4 23323 1wb1A 482 2.24e+01 2axtZ 62 2.42e+01 1aq0A 306 2.60e+01 1aq0A c.1.8.3 28842 1qmjA 132 2.74e+01 1c1lA b.29.1.3 24210 1cii 602 2.75e+01 1cii f.1.1.1,h.4.3.1 43381,45787 1tpg 91 2.79e+01 1tpg g.3.11.1,g.27.1.1 44325,44955 1mt0A 241 2.81e+01 c.37.1.12 85096 1xefA 241 2.81e+01 1u2cA 246 3.17e+01 b.1.6.2,d.272.1.1 107610,107611 1bdg 451 3.19e+01 1qhaA c.55.1.3,c.55.1.3 33461,33462 1dlpA 236 3.25e+01 1b2pA b.78.1.1,b.78.1.1 28000,28001 1gaxA 862 3.27e+01 1gaxA b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 2cpmA 94 3.30e+01 1uwmA 106 3.44e+01 1ktbA 405 3.49e+01 b.71.1.1,c.1.8.1 72960,72961 1vq2A 193 3.51e+01 1r8eA 278 3.62e+01 a.6.1.3,d.60.1.1 104843,104844 1hth 34 3.66e+01 1hth j.15.1.1 46163 1d4m3 238 3.73e+01 1aym3 1vybA 238 4.33e+01 d.151.1.1 108897 1uasA 362 4.42e+01 b.71.1.1,c.1.8.1 88388,88389 1pvtA 238 4.63e+01 c.74.1.1 95189 2fcfA 103 4.63e+01 1df9A 191 4.72e+01 1befA b.47.1.3 26420 1r85A 379 4.73e+01 c.1.8.3 104839 1ot1A 686 4.79e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87392,87393,87394,87395 1befA 181 4.80e+01 1befA b.47.1.3 26419 1qqp2 218 4.80e+01 1qqp2 1v4tA 451 5.11e+01 c.55.1.3,c.55.1.3 100311,100312 1v4sA 455 5.15e+01 c.55.1.3,c.55.1.3 100309,100310 2tecE 279 5.31e+01 1gci c.41.1.1 32545 1zvtA 256 5.32e+01 1thm 279 5.41e+01 1gci c.41.1.1 32544 1r86A 379 5.41e+01 1spbS 266 5.47e+01 1gci c.41.1.1 32532 2agyA 361 5.51e+01 1zpuA 534 5.83e+01 1ryjA 70 5.89e+01 d.15.3.2 98104 1suaA 266 6.21e+01 1gci c.41.1.1 32531 1duiA 266 6.23e+01 1gci c.41.1.1 32530 1sue 266 6.25e+01 1gci c.41.1.1 32520 2fytA 340 6.34e+01 2csiA 76 6.43e+01 1e1oA 504 6.50e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1cgy 686 6.52e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21823,22492,27730,28717 1dtuA 686 6.56e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21840,22509,27747,28734 1ualA 274 6.65e+01 c.116.1.4 88383 1lj8A 493 6.67e+01 a.100.1.9,c.2.1.6 90392,90393 1r5lA 262 6.73e+01 a.5.3.1,c.13.1.1 97099,97100 2bcjQ 353 6.79e+01 1eo5A 686 6.80e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21828,22497,27735,28722 1fovA 82 6.81e+01 1qfnA c.47.1.1 32770 3grx 82 6.81e+01 1aba c.47.1.1 32769 1cgv 686 6.85e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21820,22489,27727,28714 1oizA 278 6.86e+01 a.5.3.1,c.13.1.1 93079,93080 1ot2A 686 7.00e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87396,87397,87398,87399 2fcr 173 7.02e+01 1rcf c.23.5.1 31151 1cdg 686 7.06e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21816,22485,27723,28710 1r53A 382 7.11e+01 d.258.1.1 97063 1k4uS 62 7.13e+01 b.34.2.1 72065 1tcmA 686 7.14e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21833,22502,27740,28727 1pezA 686 7.16e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 94600,94601,94602,94603 1d3cA 686 7.18e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1cjaA 342 7.21e+01 1cjaA d.144.1.3 41708 1bbuA 504 7.21e+01 1lylA b.40.4.1,d.104.1.1 25254,40721 1sj1A 66 7.23e+01 d.58.1.4 105595 1ivzA 132 7.23e+01 d.58.41.1 76863 1cxlA 686 7.24e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 1npx 447 7.38e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30557,30558,40200 1i2rA 316 7.50e+01 1onrA c.1.10.1 61580 1cgx 686 7.54e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21832,22501,27739,28726 1nhr 447 7.55e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30553,30554,40198 1i2nA 316 7.56e+01 1onrA c.1.10.1 61572 1nhp 447 7.58e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1i2oA 316 7.59e+01 1onrA c.1.10.1 61574 1i2qA 316 7.60e+01 1onrA c.1.10.1 61578 1i2pA 316 7.61e+01 1onrA c.1.10.1 61576 1kijA 390 7.62e+01 d.14.1.3,d.122.1.2 72514,72515 1g3qA 237 7.63e+01 1hyqA c.37.1.10 60237 1onrA 316 7.65e+01 1onrA c.1.10.1 29169 1ucwA 317 7.68e+01 1onrA c.1.10.1 29171 1nhs 447 7.69e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1meeA 275 7.72e+01 1gci c.41.1.1 32540 1tme2 267 7.78e+01 1aym2 1nhq 447 7.85e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30551,30552,40197 2cb6A 291 7.89e+01 1fpmA 557 7.95e+01 c.37.1.10 59945 2mev2 256 7.97e+01 1aym2 1fmd2 218 8.01e+01 1qqp2 1scjA 275 8.03e+01 1gci c.41.1.1 32486 1d5gA 96 8.12e+01 b.36.1.1 70080 1f8wA 447 8.24e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30561,30562,40202 1feuA 206 8.38e+01 1feuA b.53.1.1 59801 1eg7A 557 8.44e+01 1eg7A c.37.1.10 32241 1xv3A 48 8.49e+01 1pesA 31 8.52e+01 1aie a.53.1.1 17859 1zh2A 121 8.57e+01 1p49A 562 8.63e+01 c.76.1.2 94089 1pj9A 686 8.68e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 94754,94755,94756,94757 1o5oA 221 8.74e+01 c.61.1.1 92509 1c26A 32 8.84e+01 1aie a.53.1.1 17830 2c9kA 612 8.96e+01