InFilePrefix /projects/compbio/experiments/undertaker/atoms-inputs/ ReadTrainingAtoms dunbrack-2191.atoms ReadRotamerLibrary dunbrack-2191.rot InFilePrefix /projects/compbio/experiments/undertaker/spots/ ReadAtomType exp-pdb.types ReadClashTable exp-pdb-2191-2symm.clash SetClashDefinition exp-pdb-2191-2symm InFilePrefix /projects/compbio/experiments/protein-predict/casp7/T0358/ ReadTargetSeq T0358.a2m 1 InFilePrefix /projects/compbio/experiments/protein-predict/casp7/T0358/ Include T0358.t04.undertaker-align.under Include T0358.t06.undertaker-align.under Include T0358.t2k.undertaker-align.under Include T0358.undertaker-align.under Include /cse/guests/palu/test/T0358/manyalignments.under PrintAlignmentsContacts quit