# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0340/ # command:# Making conformation for sequence T0340 numbered 1 through 90 Created new target T0340 from T0340.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0340/ # command:# reading script from file T0340.t04.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g9oA/T0340-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 1g9oA/T0340-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g9oA read from 1g9oA/T0340-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE # choosing archetypes in rotamer library T0340 88 :TR 1g9oA 97 :EQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=2 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_828388027.pdb -s /var/tmp/to_scwrl_828388027.seq -o /var/tmp/from_scwrl_828388027.pdb > /var/tmp/scwrl_828388027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_828388027.pdb Number of alignments=1 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fe5A/T0340-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2fe5A expands to /projects/compbio/data/pdb/2fe5.pdb.gz 2fe5A:Skipped atom 9, because occupancy 0.3 <= existing 0.700 in 2fe5A Skipped atom 13, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 15, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 17, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 19, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 42, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 44, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 47, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 51, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 53, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 55, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 57, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 59, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 294, because occupancy 0.400 <= existing 0.600 in 2fe5A Skipped atom 296, because occupancy 0.400 <= existing 0.600 in 2fe5A Skipped atom 298, because occupancy 0.400 <= existing 0.600 in 2fe5A Skipped atom 300, because occupancy 0.400 <= existing 0.600 in 2fe5A Skipped atom 302, because occupancy 0.400 <= existing 0.600 in 2fe5A Skipped atom 317, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 320, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 431, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 433, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 435, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 437, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 439, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 441, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 443, because occupancy 0.300 <= existing 0.700 in 2fe5A Skipped atom 593, because occupancy 0.250 <= existing 0.750 in 2fe5A Skipped atom 597, because occupancy 0.250 <= existing 0.750 in 2fe5A Skipped atom 599, because occupancy 0.250 <= existing 0.750 in 2fe5A Skipped atom 618, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 620, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 622, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 624, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 626, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 628, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 630, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 632, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 634, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 636, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 638, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 640, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 642, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 644, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 646, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 648, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 650, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 652, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 654, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 656, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 660, because occupancy 0.500 <= existing 0.500 in 2fe5A Skipped atom 662, because occupancy 0.500 <= existing 0.500 in 2fe5A # T0340 read from 2fe5A/T0340-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fe5A read from 2fe5A/T0340-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2fe5A to template set # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGI T0340 26 :SRPGQYIRSVDPGSPAARSG 2fe5A 251 :GDNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=5 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1144278049.pdb -s /var/tmp/to_scwrl_1144278049.seq -o /var/tmp/from_scwrl_1144278049.pdb > /var/tmp/scwrl_1144278049.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1144278049.pdb Number of alignments=2 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tp5A/T0340-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1tp5A expands to /projects/compbio/data/pdb/1tp5.pdb.gz 1tp5A:# T0340 read from 1tp5A/T0340-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tp5A read from 1tp5A/T0340-1tp5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1tp5A to template set # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=8 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_332266748.pdb -s /var/tmp/to_scwrl_332266748.seq -o /var/tmp/from_scwrl_332266748.pdb > /var/tmp/scwrl_332266748.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_332266748.pdb Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fneA/T0340-2fneA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2fneA expands to /projects/compbio/data/pdb/2fne.pdb.gz 2fneA:Skipped atom 15, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 19, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 21, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 23, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 25, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 27, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 662, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 664, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 666, because occupancy 0.500 <= existing 0.500 in 2fneA Skipped atom 668, because occupancy 0.500 <= existing 0.500 in 2fneA # T0340 read from 2fneA/T0340-2fneA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fneA read from 2fneA/T0340-2fneA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2fneA to template set # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGY T0340 26 :SRPGQYIRSVDPGSPAARSG 2fneA 1982 :GDLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE Number of specific fragments extracted= 3 number of extra gaps= 0 total=11 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1192707555.pdb -s /var/tmp/to_scwrl_1192707555.seq -o /var/tmp/from_scwrl_1192707555.pdb > /var/tmp/scwrl_1192707555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1192707555.pdb Number of alignments=4 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fcfA/T0340-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2fcfA expands to /projects/compbio/data/pdb/2fcf.pdb.gz 2fcfA:Skipped atom 598, because occupancy 0.500 <= existing 0.500 in 2fcfA Skipped atom 602, because occupancy 0.500 <= existing 0.500 in 2fcfA Skipped atom 604, because occupancy 0.500 <= existing 0.500 in 2fcfA Skipped atom 606, because occupancy 0.500 <= existing 0.500 in 2fcfA # T0340 read from 2fcfA/T0340-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fcfA read from 2fcfA/T0340-2fcfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2fcfA to template set # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSII T0340 88 :TR 2fcfA 1245 :TR Number of specific fragments extracted= 5 number of extra gaps= 1 total=16 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_31308902.pdb -s /var/tmp/to_scwrl_31308902.seq -o /var/tmp/from_scwrl_31308902.pdb > /var/tmp/scwrl_31308902.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_31308902.pdb Number of alignments=5 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qavA/T0340-1qavA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1qavA expands to /projects/compbio/data/pdb/1qav.pdb.gz 1qavA:# T0340 read from 1qavA/T0340-1qavA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qavA read from 1qavA/T0340-1qavA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1qavA to template set # found chain 1qavA in template set T0340 2 :MLRPRLCHLRKGPQ 1qavA 76 :SLQRRRVTVRKADA T0340 16 :GYGFNLHSDKSRP 1qavA 91 :GLGISIKGGRENK T0340 29 :GQYIRSVDPGSPAARSG 1qavA 105 :PILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 4 number of extra gaps= 0 total=20 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_816504794.pdb -s /var/tmp/to_scwrl_816504794.seq -o /var/tmp/from_scwrl_816504794.pdb > /var/tmp/scwrl_816504794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_816504794.pdb Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f5yA/T0340-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2f5yA expands to /projects/compbio/data/pdb/2f5y.pdb.gz 2f5yA:Skipped atom 397, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 401, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 403, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 405, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 407, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 409, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 411, because occupancy 0.500 <= existing 0.500 in 2f5yA Skipped atom 413, because occupancy 0.500 <= existing 0.500 in 2f5yA # T0340 read from 2f5yA/T0340-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f5yA read from 2f5yA/T0340-2f5yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2f5yA to template set # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0340)S87 because last residue in template chain is (2f5yA)V95 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=23 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_820697697.pdb -s /var/tmp/to_scwrl_820697697.seq -o /var/tmp/from_scwrl_820697697.pdb > /var/tmp/scwrl_820697697.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_820697697.pdb Number of alignments=7 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wf7A/T0340-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1wf7A expands to /projects/compbio/data/pdb/1wf7.pdb.gz 1wf7A:# T0340 read from 1wf7A/T0340-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1wf7A read from 1wf7A/T0340-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1wf7A to template set # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLR 1wf7A 2 :SSGSSGSVSLV T0340 13 :GPQGYGFNLHSDKSRP 1wf7A 13 :GPAPWGFRLQGGKDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1wf7A 30 :PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS Number of specific fragments extracted= 3 number of extra gaps= 0 total=26 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_655858699.pdb -s /var/tmp/to_scwrl_655858699.seq -o /var/tmp/from_scwrl_655858699.pdb > /var/tmp/scwrl_655858699.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_655858699.pdb Number of alignments=8 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f0aA/T0340-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 2f0aA expands to /projects/compbio/data/pdb/2f0a.pdb.gz 2f0aA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0340 read from 2f0aA/T0340-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f0aA read from 2f0aA/T0340-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2f0aA to template set # found chain 2f0aA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLR 2f0aA 252 :IITVTLN T0340 16 :GYGFNLHS 2f0aA 264 :FLGISIVG T0340 24 :DKSRPGQYIRSVDPGSPAARSG 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=31 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1583571042.pdb -s /var/tmp/to_scwrl_1583571042.seq -o /var/tmp/from_scwrl_1583571042.pdb > /var/tmp/scwrl_1583571042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1583571042.pdb Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i16/T0340-1i16-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1i16 expands to /projects/compbio/data/pdb/1i16.pdb.gz 1i16:Warning: there is no chain 1i16 will retry with 1i16A # T0340 read from 1i16/T0340-1i16-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1i16 read from 1i16/T0340-1i16-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1i16 to template set # found chain 1i16 in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 1i16 28 :ATVCTVTLEKMSAGLGFSLEGGK T0340 26 :SRPGQYIRSVDPGSPAARSG 1i16 55 :GDKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGPSTRL 1i16 107 :DGPVTIVIRRKSLQS Number of specific fragments extracted= 4 number of extra gaps= 0 total=35 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_559301039.pdb -s /var/tmp/to_scwrl_559301039.seq -o /var/tmp/from_scwrl_559301039.pdb > /var/tmp/scwrl_559301039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_559301039.pdb Number of alignments=10 # command:# reading script from file T0340.t06.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g9oA/T0340-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 1g9oA/T0340-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g9oA read from 1g9oA/T0340-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP T0340 87 :STRL 1g9oA 96 :DEQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=37 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1395132001.pdb -s /var/tmp/to_scwrl_1395132001.seq -o /var/tmp/from_scwrl_1395132001.pdb > /var/tmp/scwrl_1395132001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1395132001.pdb Number of alignments=11 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fe5A/T0340-2fe5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 2fe5A/T0340-2fe5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fe5A read from 2fe5A/T0340-2fe5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=40 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1186090427.pdb -s /var/tmp/to_scwrl_1186090427.seq -o /var/tmp/from_scwrl_1186090427.pdb > /var/tmp/scwrl_1186090427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1186090427.pdb Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tp5A/T0340-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 1tp5A/T0340-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tp5A read from 1tp5A/T0340-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=43 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1974806402.pdb -s /var/tmp/to_scwrl_1974806402.seq -o /var/tmp/from_scwrl_1974806402.pdb > /var/tmp/scwrl_1974806402.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1974806402.pdb Number of alignments=13 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fneA/T0340-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 2fneA/T0340-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fneA read from 2fneA/T0340-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE Number of specific fragments extracted= 3 number of extra gaps= 0 total=46 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1473144499.pdb -s /var/tmp/to_scwrl_1473144499.seq -o /var/tmp/from_scwrl_1473144499.pdb > /var/tmp/scwrl_1473144499.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1473144499.pdb Number of alignments=14 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fcfA/T0340-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 2fcfA/T0340-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fcfA read from 2fcfA/T0340-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI T0340 87 :STRL 2fcfA 1244 :STRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=51 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1739000680.pdb -s /var/tmp/to_scwrl_1739000680.seq -o /var/tmp/from_scwrl_1739000680.pdb > /var/tmp/scwrl_1739000680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1739000680.pdb Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qavA/T0340-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 1qavA/T0340-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qavA read from 1qavA/T0340-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qavA in template set T0340 1 :SMLRPRLCHLRKGPQ 1qavA 75 :GSLQRRRVTVRKADA T0340 16 :GYGFNLHSDKS 1qavA 91 :GLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 4 number of extra gaps= 0 total=55 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1498617646.pdb -s /var/tmp/to_scwrl_1498617646.seq -o /var/tmp/from_scwrl_1498617646.pdb > /var/tmp/scwrl_1498617646.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1498617646.pdb Number of alignments=16 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f5yA/T0340-2f5yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 2f5yA/T0340-2f5yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f5yA read from 2f5yA/T0340-2f5yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=58 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_669908538.pdb -s /var/tmp/to_scwrl_669908538.seq -o /var/tmp/from_scwrl_669908538.pdb > /var/tmp/scwrl_669908538.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_669908538.pdb Number of alignments=17 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wf7A/T0340-1wf7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 1wf7A/T0340-1wf7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1wf7A read from 1wf7A/T0340-1wf7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLR 1wf7A 2 :SSGSSGSVSLV T0340 13 :GPQGYGFNLHSDKS 1wf7A 13 :GPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRA T0340 87 :STR 1wf7A 94 :EPV Number of specific fragments extracted= 4 number of extra gaps= 0 total=62 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1387036158.pdb -s /var/tmp/to_scwrl_1387036158.seq -o /var/tmp/from_scwrl_1387036158.pdb > /var/tmp/scwrl_1387036158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1387036158.pdb Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f0aA/T0340-2f0aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 2f0aA/T0340-2f0aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f0aA read from 2f0aA/T0340-2f0aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLR 2f0aA 252 :IITVTLN T0340 16 :GYGFNLHS 2f0aA 264 :FLGISIVG T0340 24 :DKSRPGQYIRSVDPGSPAARSG 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=67 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_12895151.pdb -s /var/tmp/to_scwrl_12895151.seq -o /var/tmp/from_scwrl_12895151.pdb > /var/tmp/scwrl_12895151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_12895151.pdb Number of alignments=19 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fc6A/T0340-1fc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 1fc6A/T0340-1fc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fc6A read from 1fc6A/T0340-1fc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fc6A in training set T0340 13 :GPQ 1fc6A 157 :AGS T0340 16 :GYGFNLHSDKS 1fc6A 162 :GVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASI 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLL T0340 73 :KAREDEARLLVVGP 1fc6A 221 :GEADSQVEVVLHAP Number of specific fragments extracted= 4 number of extra gaps= 0 total=71 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1144522534.pdb -s /var/tmp/to_scwrl_1144522534.seq -o /var/tmp/from_scwrl_1144522534.pdb > /var/tmp/scwrl_1144522534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1144522534.pdb Number of alignments=20 # command:# reading script from file T0340.t2k.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g9oA/T0340-1g9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 1g9oA/T0340-1g9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g9oA read from 1g9oA/T0340-1g9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g9oA in training set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=72 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1812282133.pdb -s /var/tmp/to_scwrl_1812282133.seq -o /var/tmp/from_scwrl_1812282133.pdb > /var/tmp/scwrl_1812282133.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1812282133.pdb Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tp5A/T0340-1tp5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 1tp5A/T0340-1tp5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tp5A read from 1tp5A/T0340-1tp5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVG 1tp5A 390 :AQY Number of specific fragments extracted= 3 number of extra gaps= 1 total=75 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1328104338.pdb -s /var/tmp/to_scwrl_1328104338.seq -o /var/tmp/from_scwrl_1328104338.pdb > /var/tmp/scwrl_1328104338.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1328104338.pdb Number of alignments=22 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fe5A/T0340-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 2fe5A/T0340-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fe5A read from 2fe5A/T0340-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fe5A in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=78 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1380171691.pdb -s /var/tmp/to_scwrl_1380171691.seq -o /var/tmp/from_scwrl_1380171691.pdb > /var/tmp/scwrl_1380171691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1380171691.pdb Number of alignments=23 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fneA/T0340-2fneA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 2fneA/T0340-2fneA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fneA read from 2fneA/T0340-2fneA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE Number of specific fragments extracted= 3 number of extra gaps= 0 total=81 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1113502214.pdb -s /var/tmp/to_scwrl_1113502214.seq -o /var/tmp/from_scwrl_1113502214.pdb > /var/tmp/scwrl_1113502214.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1113502214.pdb Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fcfA/T0340-2fcfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 2fcfA/T0340-2fcfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fcfA read from 2fcfA/T0340-2fcfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 3 :LRPRLCHLRKG 2fcfA 1147 :MQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI Number of specific fragments extracted= 4 number of extra gaps= 1 total=85 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_860516127.pdb -s /var/tmp/to_scwrl_860516127.seq -o /var/tmp/from_scwrl_860516127.pdb > /var/tmp/scwrl_860516127.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_860516127.pdb Number of alignments=25 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wf7A/T0340-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 1wf7A/T0340-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1wf7A read from 1wf7A/T0340-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1wf7A in template set T0340 8 :CHLRKGPQGYGFNLHSDKS 1wf7A 8 :SVSLVGPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA Number of specific fragments extracted= 2 number of extra gaps= 0 total=87 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_777720504.pdb -s /var/tmp/to_scwrl_777720504.seq -o /var/tmp/from_scwrl_777720504.pdb > /var/tmp/scwrl_777720504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_777720504.pdb Number of alignments=26 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f5yA/T0340-2f5yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 2f5yA/T0340-2f5yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f5yA read from 2f5yA/T0340-2f5yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=90 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1543755628.pdb -s /var/tmp/to_scwrl_1543755628.seq -o /var/tmp/from_scwrl_1543755628.pdb > /var/tmp/scwrl_1543755628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1543755628.pdb Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n99A/T0340-1n99A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always 1n99A expands to /projects/compbio/data/pdb/1n99.pdb.gz 1n99A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0340 read from 1n99A/T0340-1n99A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1n99A read from 1n99A/T0340-1n99A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1n99A to template set # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 19 :FNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1n99A 125 :IGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM T0340 85 :GP 1n99A 191 :RD Number of specific fragments extracted= 3 number of extra gaps= 1 total=93 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1722060048.pdb -s /var/tmp/to_scwrl_1722060048.seq -o /var/tmp/from_scwrl_1722060048.pdb > /var/tmp/scwrl_1722060048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1722060048.pdb Number of alignments=28 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f0aA/T0340-2f0aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 2f0aA/T0340-2f0aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f0aA read from 2f0aA/T0340-2f0aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 16 :GYGFNLHS 2f0aA 264 :FLGISIVG T0340 24 :DKSRPGQYIRSVDPGSPAARSG 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRD T0340 75 :REDEARLLVVGP 2f0aA 330 :KPGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=97 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1455590963.pdb -s /var/tmp/to_scwrl_1455590963.seq -o /var/tmp/from_scwrl_1455590963.pdb > /var/tmp/scwrl_1455590963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1455590963.pdb Number of alignments=29 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fc6A/T0340-1fc6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library always # T0340 read from 1fc6A/T0340-1fc6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fc6A read from 1fc6A/T0340-1fc6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fc6A in training set T0340 13 :GPQGYGFNLHSDKS 1fc6A 159 :SVTGVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKA 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0340 75 :REDEARLLVVGPS 1fc6A 223 :ADSQVEVVLHAPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=100 Will force an alignment to be made, even if fragment is small # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_328298285.pdb -s /var/tmp/to_scwrl_328298285.seq -o /var/tmp/from_scwrl_328298285.pdb > /var/tmp/scwrl_328298285.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_328298285.pdb Number of alignments=30 # command:# reading script from file T0340.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g9oA/T0340-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1g9oA/T0340-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g9oA read from 1g9oA/T0340-1g9oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE T0340 88 :TR 1g9oA 97 :EQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=102 # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_70636429.pdb -s /var/tmp/to_scwrl_70636429.seq -o /var/tmp/from_scwrl_70636429.pdb > /var/tmp/scwrl_70636429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_70636429.pdb Number of alignments=31 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tp5A/T0340-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1tp5A/T0340-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tp5A read from 1tp5A/T0340-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=105 # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_136495343.pdb -s /var/tmp/to_scwrl_136495343.seq -o /var/tmp/from_scwrl_136495343.pdb > /var/tmp/scwrl_136495343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_136495343.pdb Number of alignments=32 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fe5A/T0340-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 2fe5A/T0340-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fe5A read from 2fe5A/T0340-2fe5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGI T0340 26 :SRPGQYIRSVDPGSPAARSG 2fe5A 251 :GDNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=108 # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1472576334.pdb -s /var/tmp/to_scwrl_1472576334.seq -o /var/tmp/from_scwrl_1472576334.pdb > /var/tmp/scwrl_1472576334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1472576334.pdb Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fneA/T0340-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 2fneA/T0340-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fneA read from 2fneA/T0340-2fneA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE Number of specific fragments extracted= 3 number of extra gaps= 0 total=111 # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_402903177.pdb -s /var/tmp/to_scwrl_402903177.seq -o /var/tmp/from_scwrl_402903177.pdb > /var/tmp/scwrl_402903177.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_402903177.pdb Number of alignments=34 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fcfA/T0340-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 2fcfA/T0340-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fcfA read from 2fcfA/T0340-2fcfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI T0340 87 :STRL 2fcfA 1244 :STRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=116 # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1329202899.pdb -s /var/tmp/to_scwrl_1329202899.seq -o /var/tmp/from_scwrl_1329202899.pdb > /var/tmp/scwrl_1329202899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1329202899.pdb Number of alignments=35 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qavA/T0340-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1qavA/T0340-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1qavA read from 1qavA/T0340-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1qavA in template set T0340 1 :SMLRPRLCHLRKGPQ 1qavA 75 :GSLQRRRVTVRKADA T0340 16 :GYGFNLHSDKS 1qavA 91 :GLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 4 number of extra gaps= 0 total=120 # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1503885237.pdb -s /var/tmp/to_scwrl_1503885237.seq -o /var/tmp/from_scwrl_1503885237.pdb > /var/tmp/scwrl_1503885237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1503885237.pdb Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f5yA/T0340-2f5yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 2f5yA/T0340-2f5yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f5yA read from 2f5yA/T0340-2f5yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=123 # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_1219407970.pdb -s /var/tmp/to_scwrl_1219407970.seq -o /var/tmp/from_scwrl_1219407970.pdb > /var/tmp/scwrl_1219407970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1219407970.pdb Number of alignments=37 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wf7A/T0340-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1wf7A/T0340-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1wf7A read from 1wf7A/T0340-1wf7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLR 1wf7A 2 :SSGSSGSVSLV T0340 13 :GPQGYGFNLHSDKSRP 1wf7A 13 :GPAPWGFRLQGGKDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1wf7A 30 :PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS Number of specific fragments extracted= 3 number of extra gaps= 0 total=126 # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_2416949.pdb -s /var/tmp/to_scwrl_2416949.seq -o /var/tmp/from_scwrl_2416949.pdb > /var/tmp/scwrl_2416949.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2416949.pdb Number of alignments=38 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f0aA/T0340-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 2f0aA/T0340-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f0aA read from 2f0aA/T0340-2f0aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f0aA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLR 2f0aA 252 :IITVTLN T0340 16 :GYGFNLHS 2f0aA 264 :FLGISIVG T0340 24 :DKSRPGQYIRSVDPGSPAARSG 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=131 # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_12260289.pdb -s /var/tmp/to_scwrl_12260289.seq -o /var/tmp/from_scwrl_12260289.pdb > /var/tmp/scwrl_12260289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_12260289.pdb Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fc6A/T0340-1fc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1fc6A/T0340-1fc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1fc6A read from 1fc6A/T0340-1fc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1fc6A in training set T0340 13 :GPQ 1fc6A 157 :AGS T0340 16 :GYGFNLHSDKS 1fc6A 162 :GVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASI 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLL T0340 73 :KAREDEARLLVVGP 1fc6A 221 :GEADSQVEVVLHAP Number of specific fragments extracted= 4 number of extra gaps= 0 total=135 # request to SCWRL produces command: ulimit -t 81 ; scwrl3 -i /var/tmp/to_scwrl_655495367.pdb -s /var/tmp/to_scwrl_655495367.seq -o /var/tmp/from_scwrl_655495367.pdb > /var/tmp/scwrl_655495367.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_655495367.pdb Number of alignments=40 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0340//projects/compbio/experiments/protein-predict/casp7/constraints/T0340/manyalignments.under or /projects/compbio/experiments/protein-predict/casp7/T0340//projects/compbio/experiments/protein-predict/casp7/constraints/T0340/manyalignments.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints/T0340/manyalignments.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints/T0340/manyalignments.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fneA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 2fneA/merged-a2m # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETS Number of specific fragments extracted= 3 number of extra gaps= 0 total=138 Number of alignments=41 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE T0340 89 :RL 2fneA 2047 :SV Number of specific fragments extracted= 4 number of extra gaps= 0 total=142 Number of alignments=42 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS Number of specific fragments extracted= 3 number of extra gaps= 0 total=145 Number of alignments=43 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD Number of specific fragments extracted= 3 number of extra gaps= 0 total=148 Number of alignments=44 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDET Number of specific fragments extracted= 3 number of extra gaps= 0 total=151 Number of alignments=45 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDET Number of specific fragments extracted= 3 number of extra gaps= 0 total=154 Number of alignments=46 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS Number of specific fragments extracted= 3 number of extra gaps= 0 total=157 Number of alignments=47 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS Number of specific fragments extracted= 3 number of extra gaps= 0 total=160 Number of alignments=48 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETS Number of specific fragments extracted= 3 number of extra gaps= 0 total=163 Number of alignments=49 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETS Number of specific fragments extracted= 3 number of extra gaps= 0 total=166 Number of alignments=50 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0340 8 :CHLRKGPQGYGFNLHSDKS 2fneA 1960 :ITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVL Number of specific fragments extracted= 3 number of extra gaps= 0 total=169 Number of alignments=51 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0340 6 :RLCHLRKGPQGYGFNLHSDKS 2fneA 1958 :KSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS Number of specific fragments extracted= 3 number of extra gaps= 0 total=172 Number of alignments=52 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQ 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYGSPHG T0340 31 :YIRSVDPGSPAARSG 2fneA 1987 :YVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVL Number of specific fragments extracted= 3 number of extra gaps= 0 total=175 Number of alignments=53 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQ 2fneA 1956 :QCKSITLERGPDGLGFSIVGGYGSPHG T0340 31 :YIRSVDPGSPAARSG 2fneA 1987 :YVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS Number of specific fragments extracted= 3 number of extra gaps= 0 total=178 Number of alignments=54 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGY T0340 26 :SRPGQYIRSVDPGSPAARSG 2fneA 1982 :GDLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD T0340 88 :TRL 2fneA 2046 :TSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=182 Number of alignments=55 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGY T0340 26 :SRPGQYIRSVDPGSPAARSG 2fneA 1982 :GDLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD T0340 88 :TRL 2fneA 2046 :TSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=186 Number of alignments=56 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGY T0340 26 :SRPGQYIRSVDPGSPAARSG 2fneA 1982 :GDLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD T0340 88 :TRL 2fneA 2046 :TSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=190 Number of alignments=57 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGY T0340 26 :SRPGQYIRSVDPGSPAARSG 2fneA 1982 :GDLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD T0340 88 :TRL 2fneA 2046 :TSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=194 Number of alignments=58 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGY T0340 26 :SRPGQYIRSVDPGSPAARSG 2fneA 1982 :GDLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD Number of specific fragments extracted= 3 number of extra gaps= 0 total=197 Number of alignments=59 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGY T0340 26 :SRPGQYIRSVDPGSPAARSG 2fneA 1982 :GDLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD Number of specific fragments extracted= 3 number of extra gaps= 0 total=200 Number of alignments=60 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGY T0340 26 :SRPGQYIRSVDPGSPAARSG 2fneA 1982 :GDLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD T0340 88 :TR 2fneA 2046 :TS Number of specific fragments extracted= 4 number of extra gaps= 0 total=204 Number of alignments=61 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGY T0340 26 :SRPGQYIRSVDPGSPAARSG 2fneA 1982 :GDLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE Number of specific fragments extracted= 3 number of extra gaps= 0 total=207 Number of alignments=62 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS T0340 87 :STRL 2fneA 2045 :ETSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=211 Number of alignments=63 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS T0340 87 :STRL 2fneA 2045 :ETSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=215 Number of alignments=64 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS T0340 87 :STRL 2fneA 2045 :ETSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=219 Number of alignments=65 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS T0340 87 :STRL 2fneA 2045 :ETSV Number of specific fragments extracted= 4 number of extra gaps= 0 total=223 Number of alignments=66 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS Number of specific fragments extracted= 3 number of extra gaps= 0 total=226 Number of alignments=67 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS Number of specific fragments extracted= 3 number of extra gaps= 0 total=229 Number of alignments=68 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS T0340 87 :STR 2fneA 2045 :ETS Number of specific fragments extracted= 4 number of extra gaps= 0 total=233 Number of alignments=69 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE Number of specific fragments extracted= 3 number of extra gaps= 0 total=236 Number of alignments=70 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDETS Number of specific fragments extracted= 3 number of extra gaps= 0 total=239 Number of alignments=71 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDET Number of specific fragments extracted= 3 number of extra gaps= 0 total=242 Number of alignments=72 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE T0340 89 :RL 2fneA 2047 :SV Number of specific fragments extracted= 4 number of extra gaps= 0 total=246 Number of alignments=73 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE T0340 89 :RL 2fneA 2047 :SV Number of specific fragments extracted= 4 number of extra gaps= 0 total=250 Number of alignments=74 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVL Number of specific fragments extracted= 3 number of extra gaps= 0 total=253 Number of alignments=75 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 2fneA 1956 :QCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS Number of specific fragments extracted= 3 number of extra gaps= 0 total=256 Number of alignments=76 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE Number of specific fragments extracted= 3 number of extra gaps= 0 total=259 Number of alignments=77 # 2fneA read from 2fneA/merged-a2m # found chain 2fneA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fneA)M1954 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fneA 1955 :PQCKSITLERGPDGLGFSIVGGYG T0340 27 :RPGQYIRSVDPGSPAARSG 2fneA 1983 :DLPIYVKTVFAKGAASEDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 2fneA 2003 :LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE Number of specific fragments extracted= 3 number of extra gaps= 0 total=262 Number of alignments=78 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bygA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bygA expands to /projects/compbio/data/pdb/2byg.pdb.gz 2bygA:# T0340 read from 2bygA/merged-a2m # 2bygA read from 2bygA/merged-a2m # adding 2bygA to template set # found chain 2bygA in template set T0340 10 :LRKGPQGYGF 2bygA 196 :LFKGPKGLGF T0340 20 :NLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 2bygA 213 :NQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT Number of specific fragments extracted= 2 number of extra gaps= 0 total=264 Number of alignments=79 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0340 9 :HLRKGPQGYGFNLHS 2bygA 195 :KLFKGPKGLGFSIAG T0340 24 :DKSRPGQ 2bygA 213 :NQHIPGD T0340 31 :YI 2bygA 223 :YV T0340 33 :RSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 2bygA 226 :KIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT Number of specific fragments extracted= 4 number of extra gaps= 0 total=268 Number of alignments=80 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDK 2bygA 187 :QSMTVVEIKLFKGPKGLGFSIAGGV T0340 26 :SRPGQYIRSVDPGSPAARSG 2bygA 218 :GDNSIYVTKIIDGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2bygA 239 :LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTIY Number of specific fragments extracted= 3 number of extra gaps= 0 total=271 Number of alignments=81 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDK 2bygA 187 :QSMTVVEIKLFKGPKGLGFSIAGGV T0340 26 :SRPGQYIRSVDPGSPAARSG 2bygA 218 :GDNSIYVTKIIDGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2bygA 239 :LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTIY Number of specific fragments extracted= 3 number of extra gaps= 0 total=274 Number of alignments=82 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDK 2bygA 187 :QSMTVVEIKLFKGPKGLGFSIAGGV T0340 26 :SRPGQYIRSVDPGSPAARSG 2bygA 218 :GDNSIYVTKIIDGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2bygA 239 :LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=277 Number of alignments=83 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2bygA 189 :MTVVEIKLFKGPKGLGFSIAGGV T0340 26 :SRPGQYIRSVDPGSPAARSG 2bygA 218 :GDNSIYVTKIIDGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2bygA 239 :LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=280 Number of alignments=84 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 2bygA 187 :QSMTVVEIKLFKGPKGLGFSIAGGVG T0340 27 :RPGQYIRSVDPGSPAARSG 2bygA 219 :DNSIYVTKIIDGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2bygA 239 :LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTIY Number of specific fragments extracted= 3 number of extra gaps= 0 total=283 Number of alignments=85 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 2bygA 187 :QSMTVVEIKLFKGPKGLGFSIAGGVG T0340 27 :RPGQYIRSVDPGSPAARSG 2bygA 219 :DNSIYVTKIIDGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2bygA 239 :LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTIY Number of specific fragments extracted= 3 number of extra gaps= 0 total=286 Number of alignments=86 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 2bygA 187 :QSMTVVEIKLFKGPKGLGFSIAGGVG T0340 27 :RPGQYIRSVDPGSPAARSG 2bygA 219 :DNSIYVTKIIDGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2bygA 239 :LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=289 Number of alignments=87 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 2bygA 190 :TVVEIKLFKGPKGLGFSIAGGVG T0340 27 :RPGQYIRSVDPGSPAARSG 2bygA 219 :DNSIYVTKIIDGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2bygA 239 :LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=292 Number of alignments=88 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0340 8 :CHLRKGPQGYGFNLHSDKS 2bygA 194 :IKLFKGPKGLGFSIAGGVG T0340 27 :RPGQYIRSVDPGSPAARSG 2bygA 219 :DNSIYVTKIIDGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2bygA 239 :LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTIY Number of specific fragments extracted= 3 number of extra gaps= 0 total=295 Number of alignments=89 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 2bygA 191 :VVEIKLFKGPKGLGFSIAGGVG T0340 27 :RPGQYIRSVDPGSPAARSG 2bygA 219 :DNSIYVTKIIDGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2bygA 239 :LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTIY Number of specific fragments extracted= 3 number of extra gaps= 0 total=298 Number of alignments=90 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0340 7 :LCHLRKGPQGYGFNLHSDKS 2bygA 193 :EIKLFKGPKGLGFSIAGGVG T0340 27 :RPGQYIRSVDPGSPAARSG 2bygA 219 :DNSIYVTKIIDGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 2bygA 239 :LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV Number of specific fragments extracted= 3 number of extra gaps= 0 total=301 Number of alignments=91 # 2bygA read from 2bygA/merged-a2m # found chain 2bygA in template set T0340 6 :RLCHLRKGPQGYGFNLHSDKS 2bygA 192 :VEIKLFKGPKGLGFSIAGGVG T0340 27 :RPGQYIRSVDPGSPAARSG 2bygA 219 :DNSIYVTKIIDGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 2bygA 239 :LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV Number of specific fragments extracted= 3 number of extra gaps= 0 total=304 Number of alignments=92 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1y8tA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1y8tA expands to /projects/compbio/data/pdb/1y8t.pdb.gz 1y8tA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0340 read from 1y8tA/merged-a2m # 1y8tA read from 1y8tA/merged-a2m # adding 1y8tA to template set # found chain 1y8tA in template set Warning: unaligning (T0340)L7 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0340)G13 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 T0340 1 :SMLRPR 1y8tA 13 :AKVVPS T0340 9 :HLRK 1y8tA 21 :MLET T0340 16 :GYGFNLHSDKSRP 1y8tA 203 :GLGFAIPVDQAKR T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 8 number of extra gaps= 7 total=312 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)L7 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0340)H9 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)R89 because last residue in template chain is (1y8tA)A314 T0340 5 :PR 1y8tA 17 :PS T0340 8 :C 1y8tA 24 :T T0340 16 :GYGFNLHSDKSRP 1y8tA 203 :GLGFAIPVDQAKR T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ T0340 86 :PST 1y8tA 311 :LGK Number of specific fragments extracted= 9 number of extra gaps= 7 total=321 Number of alignments=93 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 T0340 17 :YGFNLH 1y8tA 231 :LGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 6 number of extra gaps= 5 total=327 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 T0340 15 :QGYGFNLH 1y8tA 229 :ASLGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 6 number of extra gaps= 6 total=333 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)L10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)G224 Warning: unaligning (T0340)R11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)G224 Warning: unaligning (T0340)K12 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0340)G13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 1 :SMLRPRLCH 1y8tA 214 :KRIADELIS T0340 15 :QGY 1y8tA 228 :HAS T0340 18 :GFNLH 1y8tA 232 :GVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ T0340 87 :STRL 1y8tA 302 :GGSR Number of specific fragments extracted= 9 number of extra gaps= 8 total=342 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)L10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)G224 Warning: unaligning (T0340)R11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)G224 Warning: unaligning (T0340)K12 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0340)G13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)S87 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 3 :LRPRLCH 1y8tA 216 :IADELIS T0340 15 :QGY 1y8tA 228 :HAS T0340 18 :GFNLH 1y8tA 232 :GVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ T0340 88 :TR 1y8tA 303 :GS Number of specific fragments extracted= 9 number of extra gaps= 7 total=351 Number of alignments=94 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)L10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)G224 Warning: unaligning (T0340)R11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)G224 Warning: unaligning (T0340)K12 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0340)G13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 T0340 5 :PRLCH 1y8tA 218 :DELIS T0340 15 :QGY 1y8tA 228 :HAS T0340 18 :GFNLH 1y8tA 232 :GVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 8 number of extra gaps= 6 total=359 Number of alignments=95 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)L10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)G224 Warning: unaligning (T0340)R11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)G224 Warning: unaligning (T0340)K12 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)K225 Warning: unaligning (T0340)G13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)S227 Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 T0340 5 :PRLCH 1y8tA 218 :DELIS T0340 15 :QGY 1y8tA 228 :HAS T0340 18 :GFNLH 1y8tA 232 :GVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 8 number of extra gaps= 7 total=367 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S1 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)D84 Warning: unaligning (T0340)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)D84 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S87 Warning: unaligning (T0340)P5 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S87 Warning: unaligning (T0340)R6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)D88 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 3 :L 1y8tA 85 :P T0340 7 :LCHLRKGPQ 1y8tA 89 :IAVVRVQGV T0340 16 :GYGFNLHSDKSRP 1y8tA 203 :GLGFAIPVDQAKR T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLV 1y8tA 290 :GATVALTF T0340 87 :STRL 1y8tA 302 :GGSR Number of specific fragments extracted= 9 number of extra gaps= 7 total=376 Number of alignments=96 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 1 :SMLRPR 1y8tA 64 :PKTTVT T0340 7 :LCHLRK 1y8tA 89 :IAVVRV T0340 14 :PQGYGFNLHSDKSRP 1y8tA 201 :SIGLGFAIPVDQAKR T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLV 1y8tA 290 :GATVALTF T0340 87 :STRL 1y8tA 302 :GGSR Number of specific fragments extracted= 9 number of extra gaps= 5 total=385 Number of alignments=97 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 T0340 17 :YGFNLH 1y8tA 231 :LGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLV 1y8tA 290 :GATVALTF Number of specific fragments extracted= 6 number of extra gaps= 5 total=391 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 T0340 16 :GYGFNLHS 1y8tA 203 :GLGFAIPV T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLV 1y8tA 290 :GATVALTF Number of specific fragments extracted= 6 number of extra gaps= 4 total=397 Number of alignments=98 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 T0340 18 :GFNLH 1y8tA 232 :GVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA Number of specific fragments extracted= 3 number of extra gaps= 3 total=400 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 T0340 17 :YGFNLH 1y8tA 231 :LGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD Number of specific fragments extracted= 4 number of extra gaps= 4 total=404 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)L3 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0340)H9 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0340)L10 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0340)Q15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0340)G16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0340)Y17 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)S87 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 1 :SM 1y8tA 17 :PS T0340 5 :PRLC 1y8tA 21 :MLET T0340 18 :GFNLHSDK 1y8tA 35 :GIILSAEG T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 8 number of extra gaps= 9 total=412 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)L7 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0340)P14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0340)G16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0340)Y17 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)S87 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 5 :PR 1y8tA 17 :PS T0340 9 :HLRK 1y8tA 21 :MLET T0340 15 :Q 1y8tA 32 :E T0340 18 :GFNLHSDK 1y8tA 35 :GIILSAEG T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 9 number of extra gaps= 8 total=421 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1y8tA)G6 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S7 Warning: unaligning (T0340)L7 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0340)G13 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0340)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)S87 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 9 :HLRK 1y8tA 21 :MLET T0340 17 :Y 1y8tA 32 :E T0340 20 :NLHSDK 1y8tA 35 :GIILSA T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VE 1y8tA 274 :IN T0340 64 :RHAEVVASIKA 1y8tA 276 :SADALVAAVRS T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 9 number of extra gaps= 8 total=430 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1y8tA)G6 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S7 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0340)G13 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0340)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)S87 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 9 :HLRK 1y8tA 21 :MLET T0340 17 :Y 1y8tA 32 :E T0340 20 :NLHSDK 1y8tA 35 :GIILSA T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEG 1y8tA 274 :INS T0340 65 :HAEVVASIKAR 1y8tA 277 :ADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 9 number of extra gaps= 8 total=439 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)S87 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 16 :GYGFNLH 1y8tA 230 :SLGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 6 number of extra gaps= 6 total=445 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)S87 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 14 :PQGYGFNLH 1y8tA 228 :HASLGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 6 number of extra gaps= 6 total=451 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)S87 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 16 :GYGFNLH 1y8tA 230 :SLGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VE 1y8tA 274 :IN T0340 64 :RHAEVVASIKA 1y8tA 276 :SADALVAAVRS T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ T0340 88 :TR 1y8tA 302 :GG Number of specific fragments extracted= 8 number of extra gaps= 5 total=459 Number of alignments=99 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)S87 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 16 :GYGFNLH 1y8tA 230 :SLGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEG 1y8tA 274 :INS T0340 65 :HAEVVASIKAR 1y8tA 277 :ADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ T0340 88 :TR 1y8tA 302 :GG Number of specific fragments extracted= 8 number of extra gaps= 5 total=467 Number of alignments=100 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)L7 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0340)G13 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0340)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 T0340 1 :SMLRPR 1y8tA 13 :AKVVPS T0340 9 :HLRK 1y8tA 21 :MLET T0340 17 :Y 1y8tA 32 :E T0340 20 :NLHSDKSRPG 1y8tA 35 :GIILSAEGLI T0340 30 :QYIRSVDPG 1y8tA 244 :AKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 9 number of extra gaps= 8 total=476 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)L7 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0340)P14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0340)G16 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0340)Y17 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 T0340 5 :PR 1y8tA 17 :PS T0340 9 :HLRK 1y8tA 21 :MLET T0340 15 :Q 1y8tA 32 :E T0340 18 :GFNLHSD 1y8tA 35 :GIILSAE T0340 27 :RPG 1y8tA 42 :GLI T0340 30 :QYIRSVDPG 1y8tA 244 :AKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 10 number of extra gaps= 7 total=486 Number of alignments=101 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1y8tA)G6 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S7 Warning: unaligning (T0340)L7 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0340)G13 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0340)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 T0340 9 :HLRK 1y8tA 21 :MLET T0340 17 :Y 1y8tA 32 :E T0340 20 :NLHSDKS 1y8tA 35 :GIILSAE T0340 30 :QYIRSVDPG 1y8tA 244 :AKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VE 1y8tA 274 :IN T0340 64 :RHAEVVASIKAR 1y8tA 276 :SADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 9 number of extra gaps= 7 total=495 Number of alignments=102 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1y8tA)G6 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S7 Warning: unaligning (T0340)P5 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0340)R6 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0340)R11 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0340)K12 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0340)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 T0340 7 :LCHL 1y8tA 21 :MLET T0340 17 :Y 1y8tA 32 :E T0340 20 :NLHSDKSRPG 1y8tA 35 :GIILSAEGLI T0340 30 :QYIRSVDPG 1y8tA 244 :AKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEG 1y8tA 274 :INS T0340 65 :HAEVVASIKAR 1y8tA 277 :ADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 9 number of extra gaps= 7 total=504 Number of alignments=103 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 T0340 16 :GYGFNLH 1y8tA 230 :SLGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 6 number of extra gaps= 6 total=510 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)G13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 T0340 14 :PQGYGFNLH 1y8tA 228 :HASLGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 6 number of extra gaps= 7 total=516 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)S87 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 16 :GYGFNLH 1y8tA 230 :SLGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VE 1y8tA 274 :IN T0340 64 :RHAEVVASIKAR 1y8tA 276 :SADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ T0340 88 :TR 1y8tA 302 :GG Number of specific fragments extracted= 8 number of extra gaps= 5 total=524 Number of alignments=104 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)S87 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 16 :GYGFNLH 1y8tA 230 :SLGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEG 1y8tA 274 :INS T0340 65 :HAEVVASIKAR 1y8tA 277 :ADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ T0340 88 :TR 1y8tA 302 :GG Number of specific fragments extracted= 8 number of extra gaps= 5 total=532 Number of alignments=105 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)Y17 because first residue in template chain is (1y8tA)G6 Warning: unaligning (T0340)G18 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S7 Warning: unaligning (T0340)Q30 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0340)Y31 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0340)D36 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0340)P37 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0340)V69 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A55 Warning: unaligning (T0340)A70 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A55 Warning: unaligning (T0340)A79 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)P64 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)D72 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)D72 Warning: unaligning (T0340)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)G73 Warning: unaligning (T0340)R89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)R74 T0340 19 :FNLHSDKSRPG 1y8tA 8 :VEQVAAKVVPS T0340 32 :IRSV 1y8tA 21 :MLET T0340 43 :R 1y8tA 32 :E T0340 51 :RLIEVNGQNVEGLRHAEV 1y8tA 36 :IILSAEGLILTNNHVIAA T0340 80 :RLLVVG 1y8tA 65 :KTTVTF T0340 90 :L 1y8tA 75 :T Number of specific fragments extracted= 6 number of extra gaps= 5 total=538 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)R6 because first residue in template chain is (1y8tA)G6 Warning: unaligning (T0340)L7 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S7 Warning: unaligning (T0340)Q30 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0340)Y31 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0340)D36 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0340)P37 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0340)V68 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A55 Warning: unaligning (T0340)V69 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A55 Warning: unaligning (T0340)E78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)P64 Warning: unaligning (T0340)G85 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)D72 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)D72 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)G73 Warning: unaligning (T0340)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)R74 T0340 8 :CH 1y8tA 8 :VE T0340 21 :LHSDKSRPG 1y8tA 10 :QVAAKVVPS T0340 32 :IRSV 1y8tA 21 :MLET T0340 43 :R 1y8tA 32 :E T0340 51 :RLIEVNGQNVEGLR 1y8tA 36 :IILSAEGLILTNNH T0340 65 :HAE 1y8tA 51 :IAA T0340 79 :ARLLVV 1y8tA 65 :KTTVTF T0340 89 :RL 1y8tA 75 :TA Number of specific fragments extracted= 8 number of extra gaps= 5 total=546 Number of alignments=106 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)L10 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0340)R11 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1y8tA)E31 Warning: unaligning (T0340)G18 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)S34 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S34 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)S87 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 8 :CH 1y8tA 23 :ET T0340 17 :Y 1y8tA 32 :E T0340 20 :NLHSDKS 1y8tA 35 :GIILSAE T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGL 1y8tA 274 :INSA T0340 66 :AEVVASIKA 1y8tA 278 :DALVAAVRS T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ T0340 88 :TR 1y8tA 302 :GG Number of specific fragments extracted= 10 number of extra gaps= 8 total=556 Number of alignments=107 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)P5 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)V20 Warning: unaligning (T0340)R6 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)V20 Warning: unaligning (T0340)R11 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)L26 Warning: unaligning (T0340)K12 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)L26 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)S87 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 7 :LCHL 1y8tA 21 :MLET T0340 14 :PQGYGF 1y8tA 40 :AEGLIL T0340 20 :NLHSDKS 1y8tA 91 :VVRVQGV T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEG 1y8tA 274 :INS T0340 65 :HAEVVASIKA 1y8tA 277 :ADALVAAVRS T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ T0340 88 :TRL 1y8tA 302 :GGS Number of specific fragments extracted= 10 number of extra gaps= 8 total=566 Number of alignments=108 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)G13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 T0340 14 :PQGYGFNLH 1y8tA 228 :HASLGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 6 number of extra gaps= 6 total=572 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)G13 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)S227 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 T0340 14 :PQGYGFNLH 1y8tA 228 :HASLGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ Number of specific fragments extracted= 6 number of extra gaps= 7 total=578 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P289 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)S87 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 16 :GYGFNLH 1y8tA 230 :SLGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEGLRHAEVVASIK 1y8tA 274 :INSADALVAAVRSK T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ T0340 88 :TR 1y8tA 302 :GG Number of specific fragments extracted= 7 number of extra gaps= 6 total=585 # 1y8tA read from 1y8tA/merged-a2m # found chain 1y8tA in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)D238 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)D238 Warning: unaligning (T0340)K25 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)D240 Warning: unaligning (T0340)S26 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)D240 Warning: unaligning (T0340)R27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)T241 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)L242 Warning: unaligning (T0340)S39 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A254 Warning: unaligning (T0340)P40 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A254 Warning: unaligning (T0340)R43 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)A258 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)A258 Warning: unaligning (T0340)G45 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y8tA)V260 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)V260 Warning: unaligning (T0340)G57 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE in next template residue (1y8tA)R272 Warning: unaligning (T0340)Q58 because of BadResidue code TOO_FEW_ATOMS+BAD_PEPTIDE at template residue (1y8tA)R272 Warning: unaligning (T0340)N59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y8tA)P273 Warning: unaligning (T0340)R75 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P289 Warning: unaligning (T0340)G85 because of BadResidue code BAD_PEPTIDE in next template residue (1y8tA)P300 Warning: unaligning (T0340)P86 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)P300 Warning: unaligning (T0340)S87 because of BadResidue code BAD_PEPTIDE at template residue (1y8tA)S301 T0340 16 :GYGFNLH 1y8tA 230 :SLGVQVT T0340 29 :GQYIRSVDPG 1y8tA 243 :GAKIVEVVAG T0340 41 :AA 1y8tA 255 :AA T0340 47 :RAQDRLIEVN 1y8tA 261 :PKGVVVTKVD T0340 60 :VEG 1y8tA 274 :INS T0340 65 :HAEVVASIKA 1y8tA 277 :ADALVAAVRS T0340 76 :EDEARLLVV 1y8tA 290 :GATVALTFQ T0340 88 :TR 1y8tA 302 :GG Number of specific fragments extracted= 8 number of extra gaps= 6 total=593 Number of alignments=109 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qauA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1qauA/merged-a2m # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKG 1qauA 15 :VISVRLFKR T0340 14 :PQGYGFNLHSDKSRPGQYIRSVDPGSPAARS 1qauA 25 :VGGLGFLVKERVSKPPVIISDLIRGGAAEQS T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1qauA 57 :LIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0340 77 :DEARLLVVGPS 1qauA 91 :THVVLILRGPE T0340 88 :TRL 1qauA 123 :TQP Number of specific fragments extracted= 5 number of extra gaps= 0 total=598 Number of alignments=110 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0340 5 :PRLCHLRKG 1qauA 15 :VISVRLFKR T0340 14 :PQGYGFNLHSDKSRPGQYIRSVDPGSPAARS 1qauA 25 :VGGLGFLVKERVSKPPVIISDLIRGGAAEQS T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1qauA 57 :LIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0340 77 :DEARLLVVGP 1qauA 91 :THVVLILRGP Number of specific fragments extracted= 4 number of extra gaps= 0 total=602 Number of alignments=111 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPSTRL 1qauA 90 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=606 Number of alignments=112 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPSTRL 1qauA 90 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=610 Number of alignments=113 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1qauA 90 :ETHVVLILRGP Number of specific fragments extracted= 4 number of extra gaps= 0 total=614 Number of alignments=114 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qauA 90 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=618 Number of alignments=115 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE Number of specific fragments extracted= 3 number of extra gaps= 0 total=621 Number of alignments=116 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE Number of specific fragments extracted= 3 number of extra gaps= 0 total=624 Number of alignments=117 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI Number of specific fragments extracted= 3 number of extra gaps= 0 total=627 Number of alignments=118 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI Number of specific fragments extracted= 3 number of extra gaps= 0 total=630 Number of alignments=119 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGPQ 1qauA 15 :VISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 27 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG Number of specific fragments extracted= 3 number of extra gaps= 0 total=633 Number of alignments=120 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0340 1 :S 1qauA 14 :N T0340 5 :PRLCHLRKGPQ 1qauA 15 :VISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 27 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=637 Number of alignments=121 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGPQ 1qauA 15 :VISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 27 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI Number of specific fragments extracted= 3 number of extra gaps= 0 total=640 Number of alignments=122 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0340 5 :PRLCHLRKGPQ 1qauA 15 :VISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 27 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR Number of specific fragments extracted= 3 number of extra gaps= 0 total=643 Number of alignments=123 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGL 1qauA 27 :GLGFLVKERVSKPPVIISDLIRGGAAEQSGL T0340 47 :RAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1qauA 59 :QAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI Number of specific fragments extracted= 2 number of extra gaps= 0 total=645 Number of alignments=124 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0340 12 :KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGL 1qauA 23 :RKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGL T0340 47 :RAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1qauA 59 :QAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV Number of specific fragments extracted= 2 number of extra gaps= 0 total=647 Number of alignments=125 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qauA 90 :ETHVVLILRGPE T0340 88 :TRL 1qauA 123 :TQP Number of specific fragments extracted= 5 number of extra gaps= 0 total=652 Number of alignments=126 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qauA 90 :ETHVVLILRGPE T0340 88 :TRL 1qauA 123 :TQP Number of specific fragments extracted= 5 number of extra gaps= 0 total=657 Number of alignments=127 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qauA 90 :ETHVVLILRGPE T0340 89 :RL 1qauA 124 :QP Number of specific fragments extracted= 5 number of extra gaps= 0 total=662 Number of alignments=128 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 Warning: unaligning (T0340)R89 because last residue in template chain is (1qauA)P125 T0340 5 :PRLCHLRKGPQ 1qauA 15 :VISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 27 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qauA 90 :ETHVVLILRGPE T0340 88 :T 1qauA 124 :Q Number of specific fragments extracted= 5 number of extra gaps= 0 total=667 Number of alignments=129 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qauA 90 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=671 Number of alignments=130 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1qauA 90 :ETHVVLILRGP Number of specific fragments extracted= 4 number of extra gaps= 0 total=675 Number of alignments=131 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qauA 90 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=679 Number of alignments=132 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGPQ 1qauA 15 :VISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 27 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qauA 90 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=683 Number of alignments=133 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1qauA 90 :ETHVVLILRGP T0340 88 :TRL 1qauA 123 :TQP Number of specific fragments extracted= 5 number of extra gaps= 0 total=688 Number of alignments=134 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0340 1 :S 1qauA 14 :N T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1qauA 90 :ETHVVLILRGP T0340 88 :TRL 1qauA 123 :TQP Number of specific fragments extracted= 6 number of extra gaps= 0 total=694 Number of alignments=135 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1qauA 90 :ETHVVLILRGP Number of specific fragments extracted= 4 number of extra gaps= 0 total=698 Number of alignments=136 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1qauA 90 :ETHVVLILRGP T0340 87 :STR 1qauA 114 :DGT Number of specific fragments extracted= 5 number of extra gaps= 0 total=703 Number of alignments=137 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1qauA 90 :ETHVVLILRGP Number of specific fragments extracted= 4 number of extra gaps= 0 total=707 Number of alignments=138 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qauA 90 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=711 Number of alignments=139 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPSTR 1qauA 90 :ETHVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=715 Number of alignments=140 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLRKGP 1qauA 15 :VISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 26 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPSTR 1qauA 90 :ETHVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=719 Number of alignments=141 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1qauA)N14 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 15 :VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG Number of specific fragments extracted= 2 number of extra gaps= 0 total=721 Number of alignments=142 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1qauA)N14 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 15 :VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG Number of specific fragments extracted= 2 number of extra gaps= 0 total=723 Number of alignments=143 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLR 1qauA 15 :VISVRLF T0340 12 :KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 23 :RKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRG T0340 75 :REDEARLLVVGPSTRL 1qauA 89 :SETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=727 Number of alignments=144 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLR 1qauA 15 :VISVRLF T0340 12 :KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 23 :RKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRG T0340 75 :REDEARLLVVGPSTR 1qauA 89 :SETHVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=731 Number of alignments=145 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0340 9 :HLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 20 :LFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI Number of specific fragments extracted= 2 number of extra gaps= 0 total=733 Number of alignments=146 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0340 9 :HLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 20 :LFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR Number of specific fragments extracted= 2 number of extra gaps= 0 total=735 Number of alignments=147 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set T0340 5 :PRLCHLR 1qauA 15 :VISVRLF T0340 12 :KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 23 :RKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRG T0340 75 :REDEARLLVVGPST 1qauA 89 :SETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=739 Number of alignments=148 # 1qauA read from 1qauA/merged-a2m # found chain 1qauA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1qauA)N14 T0340 5 :PRLCHLR 1qauA 15 :VISVRLF T0340 12 :KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qauA 23 :RKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 1qauA 58 :IQAGDIILAVNDRPLVDLSYDSALEVLRG T0340 75 :REDEARLLVVGPST 1qauA 89 :SETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=743 Number of alignments=149 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i16/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1i16/merged-a2m # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1i16 28 :ATVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL Number of specific fragments extracted= 3 number of extra gaps= 0 total=746 Number of alignments=150 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1i16 29 :TVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVI Number of specific fragments extracted= 3 number of extra gaps= 0 total=749 Number of alignments=151 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1i16 26 :AEATVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDE 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0340 79 :ARLLVVGPSTRL 1i16 110 :VTIVIRRKSLQS Number of specific fragments extracted= 4 number of extra gaps= 0 total=753 Number of alignments=152 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1i16 26 :AEATVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDE 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0340 79 :ARLLVVGPSTRL 1i16 110 :VTIVIRRKSLQS Number of specific fragments extracted= 4 number of extra gaps= 0 total=757 Number of alignments=153 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1i16 28 :ATVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDE 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0340 79 :ARLLVVGP 1i16 110 :VTIVIRRK Number of specific fragments extracted= 4 number of extra gaps= 0 total=761 Number of alignments=154 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1i16 29 :TVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDE 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG T0340 79 :ARLLVVGP 1i16 110 :VTIVIRRK Number of specific fragments extracted= 4 number of extra gaps= 0 total=765 Number of alignments=155 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 50 :DRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1i16 80 :DEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=766 Number of alignments=156 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 11 :RKGPQGYGFNLHSDKS 1i16 36 :EKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1i16 57 :KPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVI Number of specific fragments extracted= 2 number of extra gaps= 0 total=768 Number of alignments=157 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDK 1i16 26 :AEATVCTVTLEKMSAGLGFSLEGGK T0340 26 :SRPGQYIRSVDPGSPAARSG 1i16 55 :GDKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGPS 1i16 107 :DGPVTIVIRRKS T0340 88 :TRL 1i16 128 :GDS Number of specific fragments extracted= 5 number of extra gaps= 0 total=773 Number of alignments=158 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDK 1i16 26 :AEATVCTVTLEKMSAGLGFSLEGGK T0340 26 :SRPGQYIRSVDPGSPAARSG 1i16 55 :GDKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGPS 1i16 107 :DGPVTIVIRRKS T0340 88 :TRL 1i16 128 :GDS Number of specific fragments extracted= 5 number of extra gaps= 0 total=778 Number of alignments=159 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 1 :SML 1i16 1 :MPD T0340 5 :PRLCHLRKGPQGYGFNLHSDK 1i16 30 :VCTVTLEKMSAGLGFSLEGGK T0340 26 :SRPGQYIRSVDPGSPAARSG 1i16 55 :GDKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGPS 1i16 107 :DGPVTIVIRRKS T0340 88 :TRL 1i16 128 :GDS Number of specific fragments extracted= 6 number of extra gaps= 0 total=784 Number of alignments=160 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 1 :SML 1i16 1 :MPD T0340 5 :PRLCHLRKGPQGYGFNLHSDK 1i16 30 :VCTVTLEKMSAGLGFSLEGGK T0340 26 :SRPGQYIRSVDPGSPAARSG 1i16 55 :GDKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGPS 1i16 107 :DGPVTIVIRRKS T0340 88 :TRL 1i16 128 :GDS Number of specific fragments extracted= 6 number of extra gaps= 0 total=790 Number of alignments=161 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDK 1i16 30 :VCTVTLEKMSAGLGFSLEGGK T0340 26 :SRPGQYIRSVDPGSPAARSG 1i16 55 :GDKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGPS 1i16 107 :DGPVTIVIRRKS Number of specific fragments extracted= 4 number of extra gaps= 0 total=794 Number of alignments=162 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDK 1i16 29 :TVCTVTLEKMSAGLGFSLEGGK T0340 26 :SRPGQYIRSVDPGSPAARSG 1i16 55 :GDKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGPS 1i16 107 :DGPVTIVIRRKS Number of specific fragments extracted= 4 number of extra gaps= 0 total=798 Number of alignments=163 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDK 1i16 27 :EATVCTVTLEKMSAGLGFSLEGGK T0340 26 :SRPGQYIRSVDPGSPAARSG 1i16 55 :GDKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGPSTRL 1i16 107 :DGPVTIVIRRKSLQS Number of specific fragments extracted= 4 number of extra gaps= 0 total=802 Number of alignments=164 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 1i16 28 :ATVCTVTLEKMSAGLGFSLEGGK T0340 26 :SRPGQYIRSVDPGSPAARSG 1i16 55 :GDKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGPSTRL 1i16 107 :DGPVTIVIRRKSLQS Number of specific fragments extracted= 4 number of extra gaps= 0 total=806 Number of alignments=165 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1i16 26 :AEATVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGP 1i16 107 :DGPVTIVIRRK T0340 87 :STRL 1i16 127 :AGDS Number of specific fragments extracted= 5 number of extra gaps= 0 total=811 Number of alignments=166 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1i16 26 :AEATVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGP 1i16 107 :DGPVTIVIRRK T0340 89 :RL 1i16 129 :DS Number of specific fragments extracted= 5 number of extra gaps= 0 total=816 Number of alignments=167 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 1 :SML 1i16 1 :MPD T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1i16 30 :VCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGP 1i16 107 :DGPVTIVIRRK T0340 87 :STRL 1i16 127 :AGDS Number of specific fragments extracted= 6 number of extra gaps= 0 total=822 Number of alignments=168 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 1 :SML 1i16 1 :MPD T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1i16 30 :VCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGP 1i16 107 :DGPVTIVIRRK T0340 87 :STRL 1i16 127 :AGDS Number of specific fragments extracted= 6 number of extra gaps= 0 total=828 Number of alignments=169 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1i16 30 :VCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGP 1i16 107 :DGPVTIVIRRK Number of specific fragments extracted= 4 number of extra gaps= 0 total=832 Number of alignments=170 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1i16 29 :TVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGPS 1i16 107 :DGPVTIVIRRKS Number of specific fragments extracted= 4 number of extra gaps= 0 total=836 Number of alignments=171 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKS 1i16 27 :EATVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGPSTRL 1i16 107 :DGPVTIVIRRKSLQS Number of specific fragments extracted= 4 number of extra gaps= 0 total=840 Number of alignments=172 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1i16 28 :ATVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKAL T0340 76 :EDEARLLVVGPSTR 1i16 107 :DGPVTIVIRRKSLQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=844 Number of alignments=173 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1i16 26 :AEATVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=847 Number of alignments=174 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 1 :SM 1i16 1 :MP T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1i16 28 :ATVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=851 Number of alignments=175 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 1 :SML 1i16 1 :MPD T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1i16 29 :TVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRR T0340 87 :STRL 1i16 127 :AGDS Number of specific fragments extracted= 5 number of extra gaps= 0 total=856 Number of alignments=176 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 1 :SML 1i16 1 :MPD T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1i16 29 :TVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKALP T0340 77 :DEARLLVVGPSTRL 1i16 108 :GPVTIVIRRKSLQS Number of specific fragments extracted= 5 number of extra gaps= 0 total=861 Number of alignments=177 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 7 :LCHLRKGPQGYGFNLHSDKS 1i16 32 :TVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVI Number of specific fragments extracted= 3 number of extra gaps= 0 total=864 Number of alignments=178 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 7 :LCHLRKGPQGYGFNLHSDKS 1i16 32 :TVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRR Number of specific fragments extracted= 3 number of extra gaps= 0 total=867 Number of alignments=179 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKS 1i16 27 :EATVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=870 Number of alignments=180 # 1i16 read from 1i16/merged-a2m # found chain 1i16 in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1i16 28 :ATVCTVTLEKMSAGLGFSLEGGKG T0340 27 :RPGQYIRSVDPGSPAARSG 1i16 56 :DKPLTINRIFKGAASEQSE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1i16 76 :VQPGDEILQLGGTAMQGLTRFEAWNIIKALP T0340 77 :DEARLLVVGPSTRL 1i16 108 :GPVTIVIRRKSLQS Number of specific fragments extracted= 4 number of extra gaps= 0 total=874 Number of alignments=181 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1v5lA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1v5lA expands to /projects/compbio/data/pdb/1v5l.pdb.gz 1v5lA:# T0340 read from 1v5lA/merged-a2m # 1v5lA read from 1v5lA/merged-a2m # adding 1v5lA to template set # found chain 1v5lA in template set T0340 1 :SMLRPRLCHL 1v5lA 2 :SSGSSGNVVL T0340 12 :KGPQGYGFNLHSDKS 1v5lA 12 :PGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=877 Number of alignments=182 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 1 :SMLRPRLCHL 1v5lA 2 :SSGSSGNVVL T0340 12 :KGPQGYGFNLHSDKS 1v5lA 12 :PGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=880 Number of alignments=183 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 8 :CHL 1v5lA 9 :VVL T0340 12 :KGPQGYGFNLHSDKS 1v5lA 12 :PGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRA Number of specific fragments extracted= 3 number of extra gaps= 0 total=883 Number of alignments=184 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 7 :LCHL 1v5lA 8 :NVVL T0340 12 :KGPQGYGFNLHSDKS 1v5lA 12 :PGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE Number of specific fragments extracted= 3 number of extra gaps= 0 total=886 Number of alignments=185 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL Number of specific fragments extracted= 2 number of extra gaps= 0 total=888 Number of alignments=186 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL Number of specific fragments extracted= 2 number of extra gaps= 0 total=890 Number of alignments=187 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 9 :HLRKGPQGYGFNLHSDKS 1v5lA 9 :VVLPGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE Number of specific fragments extracted= 2 number of extra gaps= 0 total=892 Number of alignments=188 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 10 :LRKGPQGYGFNLHSDKS 1v5lA 10 :VLPGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE Number of specific fragments extracted= 2 number of extra gaps= 0 total=894 Number of alignments=189 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 13 :GPQGYGFNLHSD 1v5lA 13 :GPAPWGFRLSGG T0340 25 :KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1v5lA 26 :DFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL Number of specific fragments extracted= 2 number of extra gaps= 0 total=896 Number of alignments=190 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 12 :KGPQGYGFNLHSDKS 1v5lA 12 :PGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL Number of specific fragments extracted= 2 number of extra gaps= 0 total=898 Number of alignments=191 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRP 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1v5lA 30 :PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE T0340 88 :TRL 1v5lA 101 :SSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=901 Number of alignments=192 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRP 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1v5lA 30 :PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE T0340 88 :TRL 1v5lA 101 :SSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=904 Number of alignments=193 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRP 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGIDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1v5lA 30 :PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE T0340 88 :TRL 1v5lA 101 :SSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=907 Number of alignments=194 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 1 :SMLRPR 1v5lA 1 :GSSGSS T0340 8 :CHLR 1v5lA 9 :VVLP T0340 13 :GPQGYGFNLHSDKSRP 1v5lA 13 :GPAPWGFRLSGGIDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1v5lA 30 :PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE T0340 88 :TRL 1v5lA 101 :SSG Number of specific fragments extracted= 5 number of extra gaps= 0 total=912 Number of alignments=195 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 9 :HLRKGPQGYGFNLHSDKSRP 1v5lA 9 :VVLPGPAPWGFRLSGGIDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1v5lA 30 :PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE Number of specific fragments extracted= 2 number of extra gaps= 0 total=914 Number of alignments=196 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 10 :LRKGPQGYGFNLHSDKSRP 1v5lA 10 :VLPGPAPWGFRLSGGIDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1v5lA 30 :PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE Number of specific fragments extracted= 2 number of extra gaps= 0 total=916 Number of alignments=197 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRP 1v5lA 2 :SSGSSGNVVLPGPAPWGFRLSGGIDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1v5lA 30 :PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE Number of specific fragments extracted= 2 number of extra gaps= 0 total=918 Number of alignments=198 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 3 :LRPRLCHLR 1v5lA 4 :GSSGNVVLP T0340 13 :GPQGYGFNLHSDKSRP 1v5lA 13 :GPAPWGFRLSGGIDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1v5lA 30 :PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE T0340 88 :TR 1v5lA 94 :PQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=922 Number of alignments=199 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRA T0340 87 :STRL 1v5lA 100 :PSSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=925 Number of alignments=200 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRA T0340 87 :STRL 1v5lA 100 :PSSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=928 Number of alignments=201 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRA T0340 87 :STRL 1v5lA 100 :PSSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=931 Number of alignments=202 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 1 :SMLRPR 1v5lA 1 :GSSGSS T0340 8 :CHLR 1v5lA 9 :VVLP T0340 13 :GPQGYGFNLHSDKS 1v5lA 13 :GPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRA T0340 87 :STRL 1v5lA 100 :PSSG Number of specific fragments extracted= 5 number of extra gaps= 0 total=936 Number of alignments=203 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 9 :HLRKGPQGYGFNLHSDKS 1v5lA 9 :VVLPGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDR Number of specific fragments extracted= 2 number of extra gaps= 0 total=938 Number of alignments=204 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 10 :LRKGPQGYGFNLHSDKS 1v5lA 10 :VLPGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE Number of specific fragments extracted= 2 number of extra gaps= 0 total=940 Number of alignments=205 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1v5lA 3 :SGSSGNVVLPGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRA T0340 87 :S 1v5lA 93 :S Number of specific fragments extracted= 3 number of extra gaps= 0 total=943 Number of alignments=206 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 8 :CHLR 1v5lA 9 :VVLP T0340 13 :GPQGYGFNLHSDKS 1v5lA 13 :GPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRA Number of specific fragments extracted= 3 number of extra gaps= 0 total=946 Number of alignments=207 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL Number of specific fragments extracted= 2 number of extra gaps= 0 total=948 Number of alignments=208 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL Number of specific fragments extracted= 2 number of extra gaps= 0 total=950 Number of alignments=209 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1v5lA 1 :GSSGSSGNVVLPGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET T0340 89 :RL 1v5lA 102 :SG Number of specific fragments extracted= 3 number of extra gaps= 0 total=953 Number of alignments=210 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 1 :SMLRPR 1v5lA 1 :GSSGSS T0340 7 :LCHLRK 1v5lA 8 :NVVLPG T0340 14 :PQGYGFNLHSDKS 1v5lA 14 :PAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET T0340 89 :RL 1v5lA 102 :SG Number of specific fragments extracted= 5 number of extra gaps= 0 total=958 Number of alignments=211 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 9 :HLRKGPQGYGFNLHSDKS 1v5lA 9 :VVLPGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKID Number of specific fragments extracted= 2 number of extra gaps= 0 total=960 Number of alignments=212 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 11 :RKGPQGYGFNLHSDKS 1v5lA 11 :LPGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDR Number of specific fragments extracted= 2 number of extra gaps= 0 total=962 Number of alignments=213 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 9 :HLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1v5lA 10 :VLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET Number of specific fragments extracted= 1 number of extra gaps= 0 total=963 Number of alignments=214 # 1v5lA read from 1v5lA/merged-a2m # found chain 1v5lA in template set T0340 12 :KGPQGYGFNLHSDKS 1v5lA 12 :PGPAPWGFRLSGGID T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1v5lA 28 :NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET Number of specific fragments extracted= 2 number of extra gaps= 0 total=965 Number of alignments=215 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tp5A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1tp5A/merged-a2m # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGPSTRL 1tp5A 390 :AQYKPEEY Number of specific fragments extracted= 3 number of extra gaps= 1 total=968 Number of alignments=216 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGPSTRL 1tp5A 390 :AQYKPEEY Number of specific fragments extracted= 3 number of extra gaps= 1 total=971 Number of alignments=217 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 309 :REPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=974 Number of alignments=218 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 309 :REPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=977 Number of alignments=219 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGPSTRL 1tp5A 390 :AQYKPEEY Number of specific fragments extracted= 3 number of extra gaps= 1 total=980 Number of alignments=220 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGPSTRL 1tp5A 390 :AQYKPEEY Number of specific fragments extracted= 3 number of extra gaps= 1 total=983 Number of alignments=221 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=986 Number of alignments=222 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 309 :REPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGPS 1tp5A 390 :AQYKP Number of specific fragments extracted= 3 number of extra gaps= 1 total=989 Number of alignments=223 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGPSTRL 1tp5A 390 :AQYKPEEY Number of specific fragments extracted= 3 number of extra gaps= 1 total=992 Number of alignments=224 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGPSTRL 1tp5A 390 :AQYKPEEY Number of specific fragments extracted= 3 number of extra gaps= 1 total=995 Number of alignments=225 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 310 :EPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VV 1tp5A 390 :AQ Number of specific fragments extracted= 3 number of extra gaps= 1 total=998 Number of alignments=226 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 310 :EPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VV 1tp5A 390 :AQ Number of specific fragments extracted= 3 number of extra gaps= 1 total=1001 Number of alignments=227 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 311 :PRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIK 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1003 Number of alignments=228 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 310 :EPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKN Number of specific fragments extracted= 2 number of extra gaps= 0 total=1005 Number of alignments=229 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGPS 1tp5A 390 :AQYKP T0340 88 :TRL 1tp5A 413 :VTD Number of specific fragments extracted= 4 number of extra gaps= 1 total=1009 Number of alignments=230 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGPS 1tp5A 390 :AQYKP T0340 88 :TRL 1tp5A 413 :VTD Number of specific fragments extracted= 4 number of extra gaps= 1 total=1013 Number of alignments=231 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGPS 1tp5A 390 :AQYKP T0340 88 :TRL 1tp5A 413 :VTD Number of specific fragments extracted= 4 number of extra gaps= 1 total=1017 Number of alignments=232 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK T0340 89 :RL 1tp5A 414 :TD Number of specific fragments extracted= 4 number of extra gaps= 1 total=1021 Number of alignments=233 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGPS 1tp5A 390 :AQYKP Number of specific fragments extracted= 3 number of extra gaps= 1 total=1024 Number of alignments=234 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 309 :REPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGPS 1tp5A 390 :AQYKP Number of specific fragments extracted= 3 number of extra gaps= 1 total=1027 Number of alignments=235 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVG 1tp5A 390 :AQY Number of specific fragments extracted= 3 number of extra gaps= 1 total=1030 Number of alignments=236 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=1033 Number of alignments=237 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK T0340 88 :TRL 1tp5A 413 :VTD Number of specific fragments extracted= 4 number of extra gaps= 1 total=1037 Number of alignments=238 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 307 :IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=1040 Number of alignments=239 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK T0340 88 :TRL 1tp5A 413 :VTD Number of specific fragments extracted= 4 number of extra gaps= 1 total=1044 Number of alignments=240 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK T0340 88 :TRL 1tp5A 413 :VTD Number of specific fragments extracted= 4 number of extra gaps= 1 total=1048 Number of alignments=241 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=1051 Number of alignments=242 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 309 :REPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=1054 Number of alignments=243 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=1057 Number of alignments=244 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=1060 Number of alignments=245 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGPSTRL 1tp5A 390 :AQYKPEEY Number of specific fragments extracted= 3 number of extra gaps= 1 total=1063 Number of alignments=246 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGPSTRL 1tp5A 390 :AQYKPEEY Number of specific fragments extracted= 3 number of extra gaps= 1 total=1066 Number of alignments=247 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVG 1tp5A 390 :AQY Number of specific fragments extracted= 3 number of extra gaps= 1 total=1069 Number of alignments=248 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=1072 Number of alignments=249 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VV 1tp5A 390 :AQ Number of specific fragments extracted= 3 number of extra gaps= 1 total=1075 Number of alignments=250 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 309 :REPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVGP 1tp5A 390 :AQYK Number of specific fragments extracted= 3 number of extra gaps= 1 total=1078 Number of alignments=251 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVG 1tp5A 390 :AQY Number of specific fragments extracted= 3 number of extra gaps= 1 total=1081 Number of alignments=252 # 1tp5A read from 1tp5A/merged-a2m # found chain 1tp5A in template set Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tp5A)I389 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tp5A)I389 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1tp5A 308 :PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1tp5A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT T0340 83 :VVG 1tp5A 390 :AQY Number of specific fragments extracted= 3 number of extra gaps= 1 total=1084 Number of alignments=253 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i92A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1i92A expands to /projects/compbio/data/pdb/1i92.pdb.gz 1i92A:Skipped atom 533, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 543, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 545, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 547, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 549, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 551, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 553, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 555, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 557, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 561, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 563, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 565, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 567, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 569, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 577, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 581, because occupancy 0.500 <= existing 0.500 in 1i92A Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 1i92A # T0340 read from 1i92A/merged-a2m # 1i92A read from 1i92A/merged-a2m # adding 1i92A to template set # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 1 :SMLR 1i92A 9 :GMLP T0340 6 :RLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 13 :RLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPSTRL 1i92A 85 :AVRLLVVDPEQDT Number of specific fragments extracted= 3 number of extra gaps= 1 total=1087 Number of alignments=254 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 1 :SM 1i92A 9 :GM T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPSTRL 1i92A 85 :AVRLLVVDPEQDT Number of specific fragments extracted= 3 number of extra gaps= 1 total=1090 Number of alignments=255 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPS 1i92A 85 :AVRLLVVDPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=1092 Number of alignments=256 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPS 1i92A 85 :AVRLLVVDPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=1094 Number of alignments=257 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPST 1i92A 85 :AVRLLVVDPEQ T0340 89 :RL 1i92A 98 :RL Number of specific fragments extracted= 3 number of extra gaps= 1 total=1097 Number of alignments=258 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPS 1i92A 85 :AVRLLVVDPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=1099 Number of alignments=259 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGP 1i92A 85 :AVRLLVVDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=1101 Number of alignments=260 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPS 1i92A 85 :AVRLLVVDPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=1103 Number of alignments=261 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPS 1i92A 85 :AVRLLVVDPE T0340 88 :TRL 1i92A 97 :TRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=1106 Number of alignments=262 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPS 1i92A 85 :AVRLLVVDPE T0340 88 :TRL 1i92A 97 :TRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=1109 Number of alignments=263 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPS 1i92A 85 :AVRLLVVDPE T0340 88 :TRL 1i92A 97 :TRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=1112 Number of alignments=264 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPS 1i92A 85 :AVRLLVVDPE T0340 88 :TRL 1i92A 97 :TRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=1115 Number of alignments=265 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPS 1i92A 85 :AVRLLVVDPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=1117 Number of alignments=266 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPS 1i92A 85 :AVRLLVVDPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=1119 Number of alignments=267 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPS 1i92A 85 :AVRLLVVDPE T0340 88 :TR 1i92A 97 :TR Number of specific fragments extracted= 3 number of extra gaps= 1 total=1122 Number of alignments=268 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPS 1i92A 85 :AVRLLVVDPE T0340 89 :R 1i92A 97 :T Number of specific fragments extracted= 3 number of extra gaps= 1 total=1125 Number of alignments=269 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGP 1i92A 85 :AVRLLVVDP T0340 87 :STRL 1i92A 96 :DTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=1128 Number of alignments=270 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGP 1i92A 85 :AVRLLVVDP T0340 87 :STRL 1i92A 96 :DTRL Number of specific fragments extracted= 3 number of extra gaps= 1 total=1131 Number of alignments=271 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 1 :SML 1i92A 9 :GML T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGP 1i92A 85 :AVRLLVVDP T0340 87 :STRL 1i92A 96 :DTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1135 Number of alignments=272 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 1 :SML 1i92A 9 :GML T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGP 1i92A 85 :AVRLLVVDP T0340 87 :STRL 1i92A 96 :DTRL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1139 Number of alignments=273 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGP 1i92A 85 :AVRLLVVDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=1141 Number of alignments=274 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPS 1i92A 85 :AVRLLVVDPE Number of specific fragments extracted= 2 number of extra gaps= 1 total=1143 Number of alignments=275 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGP 1i92A 85 :AVRLLVVDP T0340 87 :ST 1i92A 96 :DT Number of specific fragments extracted= 3 number of extra gaps= 1 total=1146 Number of alignments=276 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPSTRL 1i92A 85 :AVRLLVVDPEQDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=1148 Number of alignments=277 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPSTRL 1i92A 85 :AVRLLVVDPEQDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=1150 Number of alignments=278 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPSTR 1i92A 85 :AVRLLVVDPEQD Number of specific fragments extracted= 2 number of extra gaps= 1 total=1152 Number of alignments=279 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPST 1i92A 85 :AVRLLVVDPEQ T0340 89 :RL 1i92A 98 :RL Number of specific fragments extracted= 3 number of extra gaps= 1 total=1155 Number of alignments=280 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPSTRL 1i92A 85 :AVRLLVVDPEQDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=1157 Number of alignments=281 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVV 1i92A 85 :AVRLLVV Number of specific fragments extracted= 2 number of extra gaps= 1 total=1159 Number of alignments=282 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGP 1i92A 85 :AVRLLVVDP Number of specific fragments extracted= 2 number of extra gaps= 1 total=1161 Number of alignments=283 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1i92A)G9 Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPSTRL 1i92A 85 :AVRLLVVDPEQDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=1163 Number of alignments=284 # 1i92A read from 1i92A/merged-a2m # found chain 1i92A in template set Warning: unaligning (T0340)E76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1i92A)N84 Warning: unaligning (T0340)D77 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1i92A)N84 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1i92A 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA T0340 78 :EARLLVVGPSTRL 1i92A 85 :AVRLLVVDPEQDT Number of specific fragments extracted= 2 number of extra gaps= 1 total=1165 Number of alignments=285 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bfeA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bfeA expands to /projects/compbio/data/pdb/1bfe.pdb.gz 1bfeA:# T0340 read from 1bfeA/merged-a2m # 1bfeA read from 1bfeA/merged-a2m # adding 1bfeA to template set # found chain 1bfeA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1167 Number of alignments=286 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1169 Number of alignments=287 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1171 Number of alignments=288 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1173 Number of alignments=289 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARS 1bfeA 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLS T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1bfeA 352 :ELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1175 Number of alignments=290 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARS 1bfeA 310 :EPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLS T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1bfeA 352 :ELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1177 Number of alignments=291 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 311 :PRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIK 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1179 Number of alignments=292 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 310 :EPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKN Number of specific fragments extracted= 2 number of extra gaps= 0 total=1181 Number of alignments=293 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP T0340 88 :TRL 1bfeA 413 :VTN Number of specific fragments extracted= 3 number of extra gaps= 0 total=1184 Number of alignments=294 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP T0340 88 :TRL 1bfeA 413 :VTN Number of specific fragments extracted= 3 number of extra gaps= 0 total=1187 Number of alignments=295 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 1 :S 1bfeA 306 :D T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP T0340 88 :TRL 1bfeA 413 :VTN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1191 Number of alignments=296 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 1 :S 1bfeA 306 :D T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0340 89 :RL 1bfeA 414 :TN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1195 Number of alignments=297 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1197 Number of alignments=298 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1199 Number of alignments=299 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1201 Number of alignments=300 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1203 Number of alignments=301 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0340 88 :TRL 1bfeA 413 :VTN Number of specific fragments extracted= 3 number of extra gaps= 0 total=1206 Number of alignments=302 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0340 88 :TRL 1bfeA 413 :VTN Number of specific fragments extracted= 3 number of extra gaps= 0 total=1209 Number of alignments=303 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 1 :S 1bfeA 306 :D T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0340 88 :TRL 1bfeA 413 :VTN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1213 Number of alignments=304 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 1 :SM 1bfeA 306 :DI T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0340 87 :STR 1bfeA 409 :SGR Number of specific fragments extracted= 4 number of extra gaps= 0 total=1217 Number of alignments=305 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1219 Number of alignments=306 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1221 Number of alignments=307 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1223 Number of alignments=308 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1225 Number of alignments=309 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1227 Number of alignments=310 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1229 Number of alignments=311 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1231 Number of alignments=312 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1233 Number of alignments=313 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=1235 Number of alignments=314 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1237 Number of alignments=315 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 2 number of extra gaps= 0 total=1239 Number of alignments=316 # 1bfeA read from 1bfeA/merged-a2m # found chain 1bfeA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1bfeA 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1bfeA 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1241 Number of alignments=317 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fc6A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1fc6A/merged-a2m # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 4 :RPRLCHLRKG 1fc6A 146 :PSRLAALRRG T0340 14 :PQGYGFNLHSDK 1fc6A 160 :VTGVGLEITYDG T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASI 1fc6A 173 :SGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLL T0340 73 :KAREDEARLL 1fc6A 422 :PAGVDINKIG T0340 87 :STRL 1fc6A 460 :PRLF Number of specific fragments extracted= 5 number of extra gaps= 0 total=1246 Number of alignments=318 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 5 :PRLCHLRKG 1fc6A 147 :SRLAALRRG T0340 14 :PQGYGFNLHSDK 1fc6A 160 :VTGVGLEITYDG T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1fc6A 173 :SGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVL Number of specific fragments extracted= 3 number of extra gaps= 0 total=1249 Number of alignments=319 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 2 :MLRPRLCHLRKGPQ 1fc6A 149 :LAALRRGTAGSVTG T0340 16 :GYGFNLHSDKS 1fc6A 164 :GLEITYDGGSG T0340 28 :PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1fc6A 175 :KDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1252 Number of alignments=320 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 2 :MLRPRLCHLRKGPQ 1fc6A 149 :LAALRRGTAGSVTG T0340 16 :GYGFNLHSDKS 1fc6A 164 :GLEITYDGGSG T0340 28 :PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1fc6A 175 :KDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0340 76 :EDEARLLVVGPS 1fc6A 224 :DSQVEVVLHAPG T0340 89 :RL 1fc6A 236 :AP Number of specific fragments extracted= 5 number of extra gaps= 0 total=1257 Number of alignments=321 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 2 :MLRPRLCHLRKGPQ 1fc6A 149 :LAALRRGTAGSVTG T0340 16 :GYGFNLHSDKS 1fc6A 164 :GLEITYDGGSG T0340 28 :PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1fc6A 175 :KDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0340 76 :EDEARLLVVGP 1fc6A 224 :DSQVEVVLHAP Number of specific fragments extracted= 4 number of extra gaps= 0 total=1261 Number of alignments=322 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 2 :MLRPRLCHLRKGPQ 1fc6A 149 :LAALRRGTAGSVTG T0340 16 :GYGFNLHSDKS 1fc6A 164 :GLEITYDGGSG T0340 28 :PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1fc6A 175 :KDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0340 76 :EDEARLLVVGP 1fc6A 224 :DSQVEVVLHAP Number of specific fragments extracted= 4 number of extra gaps= 0 total=1265 Number of alignments=323 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRP 1fc6A 147 :SRLAALRRGTAGSVTGVGLEITYDGGSG T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIK 1fc6A 176 :DVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQ T0340 74 :AREDEARLLVVGPS 1fc6A 222 :EADSQVEVVLHAPG T0340 88 :TRL 1fc6A 262 :NVA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1269 Number of alignments=324 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRP 1fc6A 147 :SRLAALRRGTAGSVTGVGLEITYDGGSG T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIK 1fc6A 176 :DVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQ T0340 74 :AREDEARLLVVGPSTR 1fc6A 222 :EADSQVEVVLHAPGAP T0340 90 :L 1fc6A 267 :A Number of specific fragments extracted= 4 number of extra gaps= 0 total=1273 Number of alignments=325 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRP 1fc6A 149 :LAALRRGTAGSVTGVGLEITYDGGSG T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIK 1fc6A 176 :DVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQ T0340 74 :AREDEARLLVVGP 1fc6A 222 :EADSQVEVVLHAP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1276 Number of alignments=326 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRP 1fc6A 149 :LAALRRGTAGSVTGVGLEITYDGGSG T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIK 1fc6A 176 :DVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQ T0340 74 :AREDEARLLVVGP 1fc6A 222 :EADSQVEVVLHAP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1279 Number of alignments=327 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1fc6A 147 :SRLAALRRGTAGSVTGVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKA 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0340 75 :REDEARLLVVGPSTRL 1fc6A 223 :ADSQVEVVLHAPGAPS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1282 Number of alignments=328 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1fc6A 147 :SRLAALRRGTAGSVTGVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKA 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0340 75 :REDEARLLVVGPSTRL 1fc6A 223 :ADSQVEVVLHAPGAPS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1285 Number of alignments=329 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1fc6A 149 :LAALRRGTAGSVTGVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKA 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0340 75 :REDEARLLVVGP 1fc6A 223 :ADSQVEVVLHAP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1288 Number of alignments=330 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1fc6A 150 :AALRRGTAGSVTGVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKA 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0340 75 :REDEARLLVVGPS 1fc6A 223 :ADSQVEVVLHAPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1291 Number of alignments=331 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 37 :PGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1fc6A 184 :PGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1292 Number of alignments=332 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 6 :RLCHLRKGPQG 1fc6A 148 :RLAALRRGTAG T0340 17 :YGFNLHSDK 1fc6A 163 :VGLEITYDG T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDE 1fc6A 173 :SGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1295 Number of alignments=333 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0340)R89 because last residue in template chain is (1fc6A)F463 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDK 1fc6A 105 :SWFKLRETYLKKEPMDRRAQTYDAI T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1fc6A 173 :SGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0340 76 :EDEARLLVVGPS 1fc6A 224 :DSQVEVVLHAPG T0340 88 :T 1fc6A 462 :L Number of specific fragments extracted= 4 number of extra gaps= 0 total=1299 Number of alignments=334 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0340)R89 because last residue in template chain is (1fc6A)F463 T0340 1 :SM 1fc6A 105 :SW T0340 19 :FNLHSD 1fc6A 107 :FKLRET T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1fc6A 173 :SGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0340 76 :EDEARLLVVGPS 1fc6A 224 :DSQVEVVLHAPG T0340 88 :T 1fc6A 462 :L Number of specific fragments extracted= 5 number of extra gaps= 0 total=1304 Number of alignments=335 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1fc6A)V78 Warning: unaligning (T0340)T88 because last residue in template chain is (1fc6A)F463 T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1fc6A 173 :SGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0340 76 :EDEARLLVVGPS 1fc6A 224 :DSQVEVVLHAPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1306 Number of alignments=336 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0340)D24 because first residue in template chain is (1fc6A)V78 Warning: unaligning (T0340)R89 because last residue in template chain is (1fc6A)F463 T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASI 1fc6A 173 :SGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLL T0340 74 :AREDEARLLVVGPS 1fc6A 222 :EADSQVEVVLHAPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1308 Number of alignments=337 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 16 :GYGFNLHSDKSRP 1fc6A 162 :GVGLEITYDGGSG T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKA 1fc6A 176 :DVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1310 Number of alignments=338 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 7 :LCHLRKGPQ 1fc6A 149 :LAALRRGTA T0340 16 :GYGFNLHSDKSRP 1fc6A 162 :GVGLEITYDGGSG T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1fc6A 176 :DVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0340 76 :EDEARLLVV 1fc6A 224 :DSQVEVVLH Number of specific fragments extracted= 4 number of extra gaps= 0 total=1314 Number of alignments=339 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 23 :SDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1fc6A 170 :DGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0340 76 :EDEARLLVVGPS 1fc6A 224 :DSQVEVVLHAPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1316 Number of alignments=340 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 13 :GPQ 1fc6A 157 :AGS T0340 16 :GYGFNLHSDKSRP 1fc6A 162 :GVGLEITYDGGSG T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASI 1fc6A 176 :DVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLL T0340 74 :AREDEARLLVVGPS 1fc6A 222 :EADSQVEVVLHAPG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1320 Number of alignments=341 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0340)R89 because last residue in template chain is (1fc6A)F463 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPG 1fc6A 105 :SWFKLRETYLKKEPMDRRAQTYDAIRKML T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1fc6A 177 :VVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0340 76 :EDEARLLVVGP 1fc6A 224 :DSQVEVVLHAP T0340 87 :ST 1fc6A 461 :RL Number of specific fragments extracted= 4 number of extra gaps= 0 total=1324 Number of alignments=342 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0340)R89 because last residue in template chain is (1fc6A)F463 T0340 9 :HLRKGPQG 1fc6A 96 :YVDKSFNG T0340 17 :YGFNLH 1fc6A 105 :SWFKLR T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1fc6A 177 :VVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0340 76 :EDEARLLVVGP 1fc6A 224 :DSQVEVVLHAP T0340 87 :ST 1fc6A 461 :RL Number of specific fragments extracted= 5 number of extra gaps= 0 total=1329 Number of alignments=343 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1fc6A)V78 T0340 3 :L 1fc6A 79 :T T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1fc6A 177 :VVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0340 76 :EDEARLLVVGP 1fc6A 224 :DSQVEVVLHAP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1332 Number of alignments=344 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0340)R89 because last residue in template chain is (1fc6A)F463 T0340 1 :S 1fc6A 78 :V T0340 5 :PRLCH 1fc6A 141 :TRFLE T0340 11 :RKGPQ 1fc6A 155 :GTAGS T0340 16 :GYGFNLHSDKS 1fc6A 162 :GVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASI 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLL T0340 73 :KAREDEARLLVVGP 1fc6A 221 :GEADSQVEVVLHAP T0340 87 :ST 1fc6A 461 :RL Number of specific fragments extracted= 7 number of extra gaps= 0 total=1339 Number of alignments=345 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 16 :GYGFNLHSDKS 1fc6A 162 :GVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0340 76 :EDEARLLVVGP 1fc6A 224 :DSQVEVVLHAP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1342 Number of alignments=346 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 15 :QGYGFNLHSDKS 1fc6A 161 :TGVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0340 76 :EDEARLLVV 1fc6A 224 :DSQVEVVLH Number of specific fragments extracted= 3 number of extra gaps= 0 total=1345 Number of alignments=347 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 15 :QGYGFNLHSDKS 1fc6A 161 :TGVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGE T0340 76 :EDEARLLVVGPST 1fc6A 224 :DSQVEVVLHAPGA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1348 Number of alignments=348 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 13 :GPQ 1fc6A 157 :AGS T0340 16 :GYGFNLHSDKS 1fc6A 162 :GVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASI 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLL T0340 73 :KAREDEARLLVVGP 1fc6A 221 :GEADSQVEVVLHAP Number of specific fragments extracted= 4 number of extra gaps= 0 total=1352 Number of alignments=349 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0340)R11 because first residue in template chain is (1fc6A)V78 T0340 12 :KGPQGYGFNLHSDKS 1fc6A 79 :TSEQLLFLEAWRAVD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1354 Number of alignments=350 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAP Number of specific fragments extracted= 1 number of extra gaps= 0 total=1355 Number of alignments=351 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1fc6A)V78 T0340 3 :L 1fc6A 79 :T T0340 6 :RLC 1fc6A 142 :RFL T0340 11 :RKGPQGYGFNLHSDKS 1fc6A 157 :AGSVTGVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAP Number of specific fragments extracted= 4 number of extra gaps= 0 total=1359 Number of alignments=352 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 3 :LRPRLC 1fc6A 139 :PFTRFL T0340 12 :KGPQGYGFNLHSDKS 1fc6A 158 :GSVTGVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKA 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0340 75 :REDEARLLVVGPS 1fc6A 223 :ADSQVEVVLHAPG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1363 Number of alignments=353 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 16 :GYGFNLHSDKS 1fc6A 162 :GVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1365 Number of alignments=354 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 15 :QGYGFNLHSDKS 1fc6A 161 :TGVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLH Number of specific fragments extracted= 2 number of extra gaps= 0 total=1367 Number of alignments=355 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 12 :KGPQGYGFNLHSDKS 1fc6A 158 :GSVTGVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1369 Number of alignments=356 # 1fc6A read from 1fc6A/merged-a2m # found chain 1fc6A in training set T0340 13 :GPQGYGFNLHSDKS 1fc6A 159 :SVTGVGLEITYDGG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKA 1fc6A 174 :GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQG T0340 75 :REDEARLLVVGPS 1fc6A 223 :ADSQVEVVLHAPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1372 Number of alignments=357 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gq4A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gq4A expands to /projects/compbio/data/pdb/1gq4.pdb.gz 1gq4A:# T0340 read from 1gq4A/merged-a2m # 1gq4A read from 1gq4A/merged-a2m # adding 1gq4A to template set # found chain 1gq4A in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1gq4A)M10 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1gq4A 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=1373 Number of alignments=358 # 1gq4A read from 1gq4A/merged-a2m # found chain 1gq4A in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1gq4A 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1374 Number of alignments=359 # 1gq4A read from 1gq4A/merged-a2m # found chain 1gq4A in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1gq4A)M10 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1gq4A 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE T0340 88 :TRL 1gq4A 97 :SLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1376 Number of alignments=360 # 1gq4A read from 1gq4A/merged-a2m # found chain 1gq4A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1gq4A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE T0340 88 :TRL 1gq4A 97 :SLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1378 Number of alignments=361 # 1gq4A read from 1gq4A/merged-a2m # found chain 1gq4A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1gq4A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1379 Number of alignments=362 # 1gq4A read from 1gq4A/merged-a2m # found chain 1gq4A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1gq4A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1380 Number of alignments=363 # 1gq4A read from 1gq4A/merged-a2m # found chain 1gq4A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1gq4A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP T0340 87 :STRL 1gq4A 96 :DSLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1382 Number of alignments=364 # 1gq4A read from 1gq4A/merged-a2m # found chain 1gq4A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1gq4A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP T0340 87 :STRL 1gq4A 96 :DSLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1384 Number of alignments=365 # 1gq4A read from 1gq4A/merged-a2m # found chain 1gq4A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1gq4A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=1385 Number of alignments=366 # 1gq4A read from 1gq4A/merged-a2m # found chain 1gq4A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1gq4A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=1386 Number of alignments=367 # 1gq4A read from 1gq4A/merged-a2m # found chain 1gq4A in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1gq4A)M10 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1gq4A 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPENDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=1387 Number of alignments=368 # 1gq4A read from 1gq4A/merged-a2m # found chain 1gq4A in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1gq4A)M10 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 1gq4A 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPEND Number of specific fragments extracted= 1 number of extra gaps= 0 total=1388 Number of alignments=369 # 1gq4A read from 1gq4A/merged-a2m # found chain 1gq4A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1gq4A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=1389 Number of alignments=370 # 1gq4A read from 1gq4A/merged-a2m # found chain 1gq4A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1gq4A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=1390 Number of alignments=371 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kefA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kefA expands to /projects/compbio/data/pdb/1kef.pdb.gz 1kefA:# T0340 read from 1kefA/merged-a2m # 1kefA read from 1kefA/merged-a2m # adding 1kefA to template set # found chain 1kefA in template set T0340 10 :LRKGPQGYGFNLHSDKSR 1kefA 7 :LERGNSGLGFSIAGGTDN T0340 28 :PGQYIRSVDPGSPAARSG 1kefA 31 :PSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1kefA 50 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM Number of specific fragments extracted= 3 number of extra gaps= 0 total=1393 Number of alignments=372 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set T0340 9 :HLRKGPQGYGFNLHSDKS 1kefA 6 :TLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1kefA 30 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1kefA 50 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM Number of specific fragments extracted= 3 number of extra gaps= 0 total=1396 Number of alignments=373 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kefA)E1 Warning: unaligning (T0340)R89 because last residue in template chain is (1kefA)P93 T0340 5 :PRLCHLRKGPQGYGFNLHSDK 1kefA 2 :YEEITLERGNSGLGFSIAGGT T0340 26 :SRPGQYIRSVDPGSPAARSG 1kefA 29 :DDPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1kefA 50 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1399 Number of alignments=374 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0340)R89 because last residue in template chain is (1kefA)P93 T0340 5 :PRLCHLRKGPQGYGFNLHSDK 1kefA 2 :YEEITLERGNSGLGFSIAGGT T0340 26 :SRPGQYIRSVDPGSPAARSG 1kefA 29 :DDPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1kefA 50 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1402 Number of alignments=375 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kefA)E1 T0340 5 :PRLCHLRKGPQGYGFNLHSDK 1kefA 2 :YEEITLERGNSGLGFSIAGGT T0340 26 :SRPGQYIRSVDPGSPAARSG 1kefA 29 :DDPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1kefA 50 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1405 Number of alignments=376 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set T0340 6 :RLCHLRKGPQGYGFNLHSDK 1kefA 3 :EEITLERGNSGLGFSIAGGT T0340 26 :SRPGQYIRSVDPGSPAARSG 1kefA 29 :DDPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1kefA 50 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1408 Number of alignments=377 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kefA)E1 Warning: unaligning (T0340)T88 because last residue in template chain is (1kefA)P93 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1kefA 2 :YEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1kefA 30 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kefA 50 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR T0340 87 :S 1kefA 92 :P Number of specific fragments extracted= 4 number of extra gaps= 0 total=1412 Number of alignments=378 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0340)T88 because last residue in template chain is (1kefA)P93 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1kefA 2 :YEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1kefA 30 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kefA 50 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR T0340 87 :S 1kefA 92 :P Number of specific fragments extracted= 4 number of extra gaps= 0 total=1416 Number of alignments=379 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kefA)E1 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1kefA 2 :YEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1kefA 30 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kefA 50 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1419 Number of alignments=380 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1kefA 2 :YEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1kefA 30 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kefA 50 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1422 Number of alignments=381 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kefA)E1 Warning: unaligning (T0340)R89 because last residue in template chain is (1kefA)P93 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1kefA 2 :YEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1kefA 30 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1kefA 50 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1425 Number of alignments=382 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kefA)E1 Warning: unaligning (T0340)R89 because last residue in template chain is (1kefA)P93 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1kefA 2 :YEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1kefA 30 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1kefA 50 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1428 Number of alignments=383 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kefA)E1 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1kefA 2 :YEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1kefA 30 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1kefA 50 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM Number of specific fragments extracted= 3 number of extra gaps= 0 total=1431 Number of alignments=384 # 1kefA read from 1kefA/merged-a2m # found chain 1kefA in template set T0340 6 :RLCHLRKGPQGYGFNLHSDKS 1kefA 3 :EEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1kefA 30 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kefA 50 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR Number of specific fragments extracted= 3 number of extra gaps= 0 total=1434 Number of alignments=385 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nf3C/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nf3C expands to /projects/compbio/data/pdb/1nf3.pdb.gz 1nf3C:# T0340 read from 1nf3C/merged-a2m # 1nf3C read from 1nf3C/merged-a2m # adding 1nf3C to template set # found chain 1nf3C in template set T0340 1 :SMLRPRLCHLRKG 1nf3C 164 :GTEKPLGFYIRDG T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1nf3C 177 :SSVRVTPHGLEKVPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=1437 Number of alignments=386 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 1 :SMLRPRLCHL 1nf3C 153 :ETHRRVRLCK T0340 11 :RKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1nf3C 173 :IRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=1440 Number of alignments=387 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 7 :LCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1nf3C 169 :LGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1442 Number of alignments=388 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 9 :HLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1nf3C 171 :FYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1444 Number of alignments=389 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRP 1nf3C 153 :ETHRRVRLCKYGTEKPLGFYIRDGSSVR T0340 29 :GQYIRSVDPGSPAARSG 1nf3C 191 :GIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=1447 Number of alignments=390 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRP 1nf3C 153 :ETHRRVRLCKYGTEKPLGFYIRDGSSVR T0340 29 :GQYIRSVDPGSPAARSG 1nf3C 191 :GIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=1450 Number of alignments=391 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRP 1nf3C 155 :HRRVRLCKYGTEKPLGFYIRDGSSVR T0340 29 :GQYIRSVDPGSPAARSG 1nf3C 191 :GIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1453 Number of alignments=392 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRP 1nf3C 155 :HRRVRLCKYGTEKPLGFYIRDGSSVR T0340 29 :GQYIRSVDPGSPAARSG 1nf3C 191 :GIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1456 Number of alignments=393 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 1 :SMLRPRLCHLRK 1nf3C 151 :LPETHRRVRLCK T0340 13 :GPQGYGFNLHSDKS 1nf3C 165 :TEKPLGFYIRDGSS T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1460 Number of alignments=394 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 1 :SMLRPRLCHLRK 1nf3C 151 :LPETHRRVRLCK T0340 13 :GPQGYGFNLHSDKS 1nf3C 165 :TEKPLGFYIRDGSS T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1464 Number of alignments=395 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 4 :RPRLCHLRK 1nf3C 154 :THRRVRLCK T0340 13 :GPQGYGFNLHSDKS 1nf3C 165 :TEKPLGFYIRDGSS T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1468 Number of alignments=396 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 3 :LRPRLCHLRK 1nf3C 153 :ETHRRVRLCK T0340 13 :GPQGYGFNLHSDKS 1nf3C 165 :TEKPLGFYIRDGSS T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPAN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1472 Number of alignments=397 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 22 :HSDKSRPGQYIRSVDPGSPAARSGLRA 1nf3C 184 :HGLEKVPGIFISRLVPGGLAQSTGLLA T0340 49 :QDRLIEVNGQNVEG 1nf3C 212 :NDEVLEVNGIEVSG Number of specific fragments extracted= 2 number of extra gaps= 0 total=1474 Number of alignments=398 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 21 :LHSDKSRPGQYIRSVDPGSPAARSGLRA 1nf3C 183 :PHGLEKVPGIFISRLVPGGLAQSTGLLA T0340 49 :QDRLIEVNGQNVEGLRHAEVVASIK 1nf3C 212 :NDEVLEVNGIEVSGKSLDQVTDMMI Number of specific fragments extracted= 2 number of extra gaps= 0 total=1476 Number of alignments=399 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 1 :SMLRPRLCHLRK 1nf3C 151 :LPETHRRVRLCK T0340 13 :GPQGYGFNLHSDK 1nf3C 165 :TEKPLGFYIRDGS T0340 26 :SRPGQYIRSVDPGSPAARSG 1nf3C 188 :KVPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1480 Number of alignments=400 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 1 :SMLRPRLCHLRK 1nf3C 151 :LPETHRRVRLCK T0340 13 :GPQGYGFNLHSDK 1nf3C 165 :TEKPLGFYIRDGS T0340 26 :SRPGQYIRSVDPGSPAARSG 1nf3C 188 :KVPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1484 Number of alignments=401 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 1 :SMLR 1nf3C 131 :IVIS T0340 6 :RLCHLRKGP 1nf3C 156 :RRVRLCKYG T0340 15 :QGYGFNLHSDK 1nf3C 167 :KPLGFYIRDGS T0340 26 :SRPGQYIRSVDPGSPAARSG 1nf3C 188 :KVPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=1489 Number of alignments=402 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 1 :SMLRP 1nf3C 131 :IVISM T0340 6 :RLCHLRKGPQ 1nf3C 156 :RRVRLCKYGT T0340 16 :GYGFNLHSDK 1nf3C 168 :PLGFYIRDGS T0340 26 :SRP 1nf3C 184 :HGL T0340 29 :GQYIRSVDPGSPAARSG 1nf3C 191 :GIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 6 number of extra gaps= 0 total=1495 Number of alignments=403 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 6 :RLCHLRK 1nf3C 156 :RRVRLCK T0340 13 :GPQGYGFNLHSDK 1nf3C 165 :TEKPLGFYIRDGS T0340 26 :SRPGQYIRSVDPGSPAARSG 1nf3C 188 :KVPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPAN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1499 Number of alignments=404 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 5 :PRLCHLRK 1nf3C 155 :HRRVRLCK T0340 13 :GPQGYGFNLHSDK 1nf3C 165 :TEKPLGFYIRDGS T0340 26 :SRPGQYIRSVDPGSPAARSG 1nf3C 188 :KVPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPAN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1503 Number of alignments=405 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 2 :MLRPRLCHLRKGP 1nf3C 152 :PETHRRVRLCKYG T0340 15 :QGYGFNLHSDK 1nf3C 167 :KPLGFYIRDGS T0340 26 :SRPGQYIRSVDPGSPAARSG 1nf3C 188 :KVPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1507 Number of alignments=406 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 2 :MLRPRLCHLRKGPQ 1nf3C 152 :PETHRRVRLCKYGT T0340 16 :GYGFNLHSDK 1nf3C 168 :PLGFYIRDGS T0340 26 :SRP 1nf3C 184 :HGL T0340 29 :GQYIRSVDPGSPAARSG 1nf3C 191 :GIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=1512 Number of alignments=407 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1nf3C 153 :ETHRRVRLCKYGTEKPLGFYIRDGSS T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=1515 Number of alignments=408 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 2 :MLRPRLCHLRKGP 1nf3C 152 :PETHRRVRLCKYG T0340 15 :QGYGFNLHSDKS 1nf3C 167 :KPLGFYIRDGSS T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1519 Number of alignments=409 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 1 :S 1nf3C 131 :I T0340 6 :RLCHLRKGP 1nf3C 156 :RRVRLCKYG T0340 15 :QGYGFNLHSDKS 1nf3C 167 :KPLGFYIRDGSS T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=1524 Number of alignments=410 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 1 :SMLRP 1nf3C 131 :IVISM T0340 6 :RLCHLRKGPQ 1nf3C 156 :RRVRLCKYGT T0340 16 :GYGFNLHSDKS 1nf3C 168 :PLGFYIRDGSS T0340 30 :QYIRSVDPGSPAARSG 1nf3C 192 :IFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 5 number of extra gaps= 0 total=1529 Number of alignments=411 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 6 :RLCHLRKGP 1nf3C 156 :RRVRLCKYG T0340 15 :QGYGFNLHSDKS 1nf3C 167 :KPLGFYIRDGSS T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP Number of specific fragments extracted= 4 number of extra gaps= 0 total=1533 Number of alignments=412 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 6 :RLCHLRKGP 1nf3C 156 :RRVRLCKYG T0340 15 :QGYGFNLHSDKS 1nf3C 167 :KPLGFYIRDGSS T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1537 Number of alignments=413 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 2 :MLRPRLCHLRKGP 1nf3C 152 :PETHRRVRLCKYG T0340 15 :QGYGFNLHSDKS 1nf3C 167 :KPLGFYIRDGSS T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1541 Number of alignments=414 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 2 :MLRPRLCHLRKGPQ 1nf3C 152 :PETHRRVRLCKYGT T0340 16 :GYGFNLHSDKS 1nf3C 168 :PLGFYIRDGSS T0340 30 :QYIRSVDPGSPAARSG 1nf3C 192 :IFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1545 Number of alignments=415 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set Warning: unaligning (T0340)R6 because first residue in template chain is (1nf3C)I131 T0340 7 :LCHLRKGPQGYGFNLHSDKS 1nf3C 132 :VISMPQDFRPVSSIIDVDIL T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=1548 Number of alignments=416 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1nf3C 155 :HRRVRLCKYGTEKPLGFYIRDGSS T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=1551 Number of alignments=417 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 2 :MLRPRLCHLR 1nf3C 136 :PQDFRPVSSI T0340 12 :KGPQGYGFNLHSDKS 1nf3C 164 :GTEKPLGFYIRDGSS T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1555 Number of alignments=418 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 5 :PRLCHLRKGP 1nf3C 155 :HRRVRLCKYG T0340 15 :QGYGFNLHSDKS 1nf3C 167 :KPLGFYIRDGSS T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1559 Number of alignments=419 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 9 :HLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1nf3C 171 :FYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1561 Number of alignments=420 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 8 :CHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1nf3C 170 :GFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1563 Number of alignments=421 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 3 :LRPRLCHL 1nf3C 153 :ETHRRVRL T0340 11 :RKGPQGYGFNLHSDKS 1nf3C 163 :YGTEKPLGFYIRDGSS T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1567 Number of alignments=422 # 1nf3C read from 1nf3C/merged-a2m # found chain 1nf3C in template set T0340 4 :RPRLCHLR 1nf3C 154 :THRRVRLC T0340 12 :KGPQGYGFNLHSDKS 1nf3C 164 :GTEKPLGFYIRDGSS T0340 27 :RPGQYIRSVDPGSPAARSG 1nf3C 189 :VPGIFISRLVPGGLAQSTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1nf3C 209 :LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN Number of specific fragments extracted= 4 number of extra gaps= 0 total=1571 Number of alignments=423 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wf7A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1wf7A/merged-a2m # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLRKG 1wf7A 2 :SSGSSGSVSLVGP T0340 15 :QGYGFNLHSDKS 1wf7A 15 :APWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1574 Number of alignments=424 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLRKG 1wf7A 2 :SSGSSGSVSLVGP T0340 15 :QGYGFNLHSDKS 1wf7A 15 :APWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1577 Number of alignments=425 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 8 :CHLRKG 1wf7A 9 :VSLVGP T0340 15 :QGYGFNLHSDKS 1wf7A 15 :APWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1580 Number of alignments=426 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 7 :LCHLRKG 1wf7A 8 :SVSLVGP T0340 15 :QGYGFNLHSDKS 1wf7A 15 :APWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1583 Number of alignments=427 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLRKGP 1wf7A 2 :SSGSSGSVSLVGPA T0340 16 :GYGFNLHSDKS 1wf7A 16 :PWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1586 Number of alignments=428 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLRKGP 1wf7A 2 :SSGSSGSVSLVGPA T0340 16 :GYGFNLHSDKS 1wf7A 16 :PWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA T0340 89 :RL 1wf7A 102 :SG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1590 Number of alignments=429 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 3 :LRPRLCHLRKGP 1wf7A 4 :GSSGSVSLVGPA T0340 16 :GYGFNLHSDKS 1wf7A 16 :PWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRA Number of specific fragments extracted= 3 number of extra gaps= 0 total=1593 Number of alignments=430 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 4 :RPRLCHLRKGP 1wf7A 5 :SSGSVSLVGPA T0340 16 :GYGFNLHSDKS 1wf7A 16 :PWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1596 Number of alignments=431 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1598 Number of alignments=432 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1600 Number of alignments=433 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 13 :GPQGYGFNLHSDKS 1wf7A 13 :GPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1602 Number of alignments=434 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 13 :GPQGYGFNLHSDKS 1wf7A 13 :GPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1604 Number of alignments=435 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 13 :GPQGYGFNLHSDKS 1wf7A 13 :GPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKA 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1606 Number of alignments=436 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 13 :GPQGYGFNLHSDKSRP 1wf7A 13 :GPAPWGFRLQGGKDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1wf7A 30 :PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACT Number of specific fragments extracted= 2 number of extra gaps= 0 total=1608 Number of alignments=437 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLR 1wf7A 2 :SSGSSGSVSLV T0340 13 :GPQGYGFNLHSDKSRP 1wf7A 13 :GPAPWGFRLQGGKDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1wf7A 30 :PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS T0340 88 :TRL 1wf7A 101 :SSG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1612 Number of alignments=438 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLR 1wf7A 2 :SSGSSGSVSLV T0340 13 :GPQGYGFNLHSDKSRP 1wf7A 13 :GPAPWGFRLQGGKDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1wf7A 30 :PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS T0340 88 :TRL 1wf7A 101 :SSG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1616 Number of alignments=439 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRP 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1wf7A 30 :PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS T0340 88 :TRL 1wf7A 101 :SSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1619 Number of alignments=440 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPR 1wf7A 1 :GSSGSS T0340 7 :LCHLR 1wf7A 8 :SVSLV T0340 13 :GPQGYGFNLHSDKSRP 1wf7A 13 :GPAPWGFRLQGGKDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1wf7A 30 :PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS T0340 88 :TRL 1wf7A 101 :SSG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1624 Number of alignments=441 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 13 :GPQGYGFNLHSDKSRP 1wf7A 13 :GPAPWGFRLQGGKDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1wf7A 30 :PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1626 Number of alignments=442 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 13 :GPQGYGFNLHSDKSRP 1wf7A 13 :GPAPWGFRLQGGKDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1wf7A 30 :PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1628 Number of alignments=443 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLR 1wf7A 2 :SSGSSGSVSLV T0340 13 :GPQGYGFNLHSDKSRP 1wf7A 13 :GPAPWGFRLQGGKDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1wf7A 30 :PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1631 Number of alignments=444 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLR 1wf7A 2 :SSGSSGSVSLV T0340 13 :GPQGYGFNLHSDKSRP 1wf7A 13 :GPAPWGFRLQGGKDFN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1wf7A 30 :PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS Number of specific fragments extracted= 3 number of extra gaps= 0 total=1634 Number of alignments=445 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRA T0340 87 :STRL 1wf7A 100 :PSSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1637 Number of alignments=446 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHL 1wf7A 2 :SSGSSGSVSL T0340 12 :KGPQGYGFNLHSDKS 1wf7A 12 :VGPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRA T0340 87 :STRL 1wf7A 100 :PSSG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1641 Number of alignments=447 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRA T0340 87 :STRL 1wf7A 100 :PSSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1644 Number of alignments=448 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPR 1wf7A 1 :GSSGSS T0340 7 :LCHLR 1wf7A 8 :SVSLV T0340 13 :GPQGYGFNLHSDKS 1wf7A 13 :GPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRA T0340 87 :STRL 1wf7A 100 :PSSG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1649 Number of alignments=449 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 13 :GPQGYGFNLHSDKS 1wf7A 13 :GPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1651 Number of alignments=450 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 13 :GPQGYGFNLHSDKS 1wf7A 13 :GPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1653 Number of alignments=451 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLR 1wf7A 2 :SSGSSGSVSLV T0340 13 :GPQGYGFNLHSDKS 1wf7A 13 :GPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRA T0340 88 :TRL 1wf7A 89 :AAA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1657 Number of alignments=452 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLR 1wf7A 2 :SSGSSGSVSLV T0340 13 :GPQGYGFNLHSDKS 1wf7A 13 :GPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRA T0340 87 :STR 1wf7A 94 :EPV Number of specific fragments extracted= 4 number of extra gaps= 0 total=1661 Number of alignments=453 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1663 Number of alignments=454 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1665 Number of alignments=455 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1667 Number of alignments=456 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1wf7A 1 :GSSGSSGSVSLVGPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQR T0340 86 :PSTRL 1wf7A 99 :GPSSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1670 Number of alignments=457 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 11 :RKGPQGYGFNLHSDKS 1wf7A 11 :LVGPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=1672 Number of alignments=458 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 12 :KGPQGYGFNLHSDKS 1wf7A 12 :VGPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1674 Number of alignments=459 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKS 1wf7A 2 :SSGSSGSVSLVGPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1676 Number of alignments=460 # 1wf7A read from 1wf7A/merged-a2m # found chain 1wf7A in template set T0340 8 :CHLRKGPQGYGFNLHSDKS 1wf7A 8 :SVSLVGPAPWGFRLQGGKD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1wf7A 28 :NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1678 Number of alignments=461 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1um7A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1um7A expands to /projects/compbio/data/pdb/1um7.pdb.gz 1um7A:# T0340 read from 1um7A/merged-a2m # 1um7A read from 1um7A/merged-a2m # adding 1um7A to template set # found chain 1um7A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1um7A 16 :PRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIK 1um7A 58 :LRRGDRILSVNGVNLRNATHEQAAAALK Number of specific fragments extracted= 2 number of extra gaps= 0 total=1680 Number of alignments=462 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1um7A 15 :EPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 1um7A 58 :LRRGDRILSVNGVNLRNATHEQAAAALKR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1682 Number of alignments=463 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1um7A 12 :DAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1um7A 58 :LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRP T0340 88 :TRL 1um7A 111 :SSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1685 Number of alignments=464 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1um7A 12 :DAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1um7A 58 :LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRP T0340 88 :TRL 1um7A 111 :SSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1688 Number of alignments=465 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1um7A 12 :DAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1um7A 58 :LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1690 Number of alignments=466 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1um7A 13 :AREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1um7A 58 :LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRP Number of specific fragments extracted= 2 number of extra gaps= 0 total=1692 Number of alignments=467 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1um7A 12 :DAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1um7A 58 :LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYR T0340 87 :STRL 1um7A 110 :PSSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1695 Number of alignments=468 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1um7A 12 :DAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1um7A 58 :LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYR T0340 87 :STRL 1um7A 110 :PSSG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1698 Number of alignments=469 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1um7A 12 :DAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1um7A 58 :LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1700 Number of alignments=470 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1um7A 13 :AREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1um7A 58 :LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1702 Number of alignments=471 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0340 1 :S 1um7A 1 :G T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1um7A 13 :AREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1um7A 58 :LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEY Number of specific fragments extracted= 3 number of extra gaps= 0 total=1705 Number of alignments=472 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0340 1 :S 1um7A 1 :G T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1um7A 13 :AREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1um7A 58 :LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEY Number of specific fragments extracted= 3 number of extra gaps= 0 total=1708 Number of alignments=473 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1um7A 13 :AREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1um7A 58 :LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=1710 Number of alignments=474 # 1um7A read from 1um7A/merged-a2m # found chain 1um7A in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1um7A 14 :REPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1um7A 58 :LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1712 Number of alignments=475 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f0aA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 2f0aA/merged-a2m # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLR 2f0aA 252 :IITVTLN T0340 12 :KG 2f0aA 260 :EK T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1718 Number of alignments=476 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLR 2f0aA 252 :IITVTLN T0340 12 :KG 2f0aA 260 :EK T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1724 Number of alignments=477 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0340 5 :PRLCHLR 2f0aA 252 :IITVTLN T0340 12 :KG 2f0aA 260 :EK T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1730 Number of alignments=478 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0340 5 :PRLCHLR 2f0aA 252 :IITVTLN T0340 12 :KG 2f0aA 260 :EK T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 6 number of extra gaps= 1 total=1736 Number of alignments=479 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLRKGP 2f0aA 252 :IITVTLNMEK T0340 16 :GYGFNLHSDKSRP 2f0aA 264 :FLGISIVGQSNER T0340 29 :GQYIRSVDPGSPAARSG 2f0aA 280 :GIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1741 Number of alignments=480 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLRKGP 2f0aA 252 :IITVTLNMEK T0340 16 :GYGFNLHSDKSRP 2f0aA 264 :FLGISIVGQSNER T0340 29 :GQYIRSVDPGSPAARSG 2f0aA 280 :GIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1746 Number of alignments=481 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 T0340 5 :PRLCHLRKGP 2f0aA 252 :IITVTLNMEK T0340 16 :GYGFNLHSDKSRP 2f0aA 264 :FLGISIVGQSNER T0340 29 :GQYIRSVDPGSPAARSG 2f0aA 280 :GIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1751 Number of alignments=482 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 T0340 5 :PRLCHLRKGP 2f0aA 252 :IITVTLNMEK T0340 16 :GYGFNLHSDKSRP 2f0aA 264 :FLGISIVGQSNER T0340 29 :GQYIRSVDPGSPAARSG 2f0aA 280 :GIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1756 Number of alignments=483 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0340 1 :SML 2f0aA 251 :MII T0340 6 :RLCHLRKG 2f0aA 254 :TVTLNMEK T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKLE Number of specific fragments extracted= 5 number of extra gaps= 1 total=1761 Number of alignments=484 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0340 1 :SML 2f0aA 251 :MII T0340 6 :RLCHLRKG 2f0aA 254 :TVTLNMEK T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTV Number of specific fragments extracted= 5 number of extra gaps= 1 total=1766 Number of alignments=485 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0340 7 :LCHLRKG 2f0aA 255 :VTLNMEK T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI Number of specific fragments extracted= 4 number of extra gaps= 1 total=1770 Number of alignments=486 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0340 7 :LCHLRKG 2f0aA 255 :VTLNMEK T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARL 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGP Number of specific fragments extracted= 4 number of extra gaps= 1 total=1774 Number of alignments=487 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set T0340 23 :SDKSRPGQYIRSVDPGSPAARSG 2f0aA 274 :NERGDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVV 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAV Number of specific fragments extracted= 2 number of extra gaps= 0 total=1776 Number of alignments=488 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set T0340 24 :DKSRPGQYIRSVDPGSP 2f0aA 275 :ERGDGGIYIGSIMKGGA T0340 41 :AARSGLRAQDRLIEVNGQNVEGLRHAEVVASI 2f0aA 293 :AADGRIEPGDMLLQVNDINFENMSNDDAVRVL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1778 Number of alignments=489 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLRKGP 2f0aA 252 :IITVTLNMEK T0340 17 :YGFNLHSDK 2f0aA 265 :LGISIVGQS T0340 26 :SRPGQYIRSVDPGSPAARSG 2f0aA 277 :GDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1783 Number of alignments=490 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLRKGP 2f0aA 252 :IITVTLNMEK T0340 17 :YGFNLHSDK 2f0aA 265 :LGISIVGQS T0340 26 :SRPGQYIRSVDPGSPAARSG 2f0aA 277 :GDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1788 Number of alignments=491 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLRKG 2f0aA 252 :IITVTLNME T0340 16 :GYGFNLHSDK 2f0aA 264 :FLGISIVGQS T0340 26 :SRPGQYIRSVDPGSPAARSG 2f0aA 277 :GDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1793 Number of alignments=492 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLR 2f0aA 252 :IITVTLN T0340 16 :GYGFNLHS 2f0aA 264 :FLGISIVG T0340 24 :DKSRPGQYIRSVDPGSPAARSG 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1798 Number of alignments=493 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLRKGP 2f0aA 252 :IITVTLNMEK T0340 17 :YGFNLHSDK 2f0aA 265 :LGISIVGQS T0340 26 :SRPGQYIRSVDPGSPAARSG 2f0aA 277 :GDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1803 Number of alignments=494 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 6 :RLCHLRKGP 2f0aA 253 :ITVTLNMEK T0340 17 :YGFNLHSDK 2f0aA 265 :LGISIVGQS T0340 26 :SRPGQYIRSVDPGSPAARSG 2f0aA 277 :GDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1808 Number of alignments=495 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLRKG 2f0aA 252 :IITVTLNME T0340 16 :GYGFNLHSDK 2f0aA 264 :FLGISIVGQS T0340 26 :SRPGQYIRSVDPGSPAARSG 2f0aA 277 :GDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1813 Number of alignments=496 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLR 2f0aA 252 :IITVTLN T0340 16 :GYGFNLHS 2f0aA 264 :FLGISIVG T0340 24 :DKSRPGQYIRSVDPGSPAARSG 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1818 Number of alignments=497 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0340 5 :PRLCHLRKGP 2f0aA 252 :IITVTLNMEK T0340 17 :YGFNLHSDKS 2f0aA 265 :LGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1823 Number of alignments=498 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0340 5 :PRLCHLRKGP 2f0aA 252 :IITVTLNMEK T0340 17 :YGFNLHSDKS 2f0aA 265 :LGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1828 Number of alignments=499 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0340 5 :PRLCHLRKGP 2f0aA 252 :IITVTLNMEK T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1833 Number of alignments=500 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0340 5 :PRLCHLR 2f0aA 252 :IITVTLN T0340 16 :GYGFNLHS 2f0aA 264 :FLGISIVG T0340 24 :DKSRPGQYIRSVDPGSPAARSG 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1838 Number of alignments=501 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0340 5 :PRLCHLRKGP 2f0aA 252 :IITVTLNMEK T0340 17 :YGFNLHSDKS 2f0aA 265 :LGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVG 2f0aA 331 :PGPIVLTVAK Number of specific fragments extracted= 5 number of extra gaps= 1 total=1843 Number of alignments=502 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0340 6 :RLCHLRKGP 2f0aA 253 :ITVTLNMEK T0340 17 :YGFNLHSDKS 2f0aA 265 :LGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVG 2f0aA 331 :PGPIVLTVAK Number of specific fragments extracted= 5 number of extra gaps= 1 total=1848 Number of alignments=503 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLRKGP 2f0aA 252 :IITVTLNMEK T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1853 Number of alignments=504 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLR 2f0aA 252 :IITVTLN T0340 16 :GYGFNLHS 2f0aA 264 :FLGISIVG T0340 24 :DKSRPGQYIRSVDPGSPAARSG 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDI T0340 76 :EDEARLLVVGP 2f0aA 331 :PGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1858 Number of alignments=505 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 4 :RPRLCHLRKG 2f0aA 252 :IITVTLNMEK T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRD T0340 75 :REDEARLLVVGP 2f0aA 330 :KPGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1863 Number of alignments=506 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0340 4 :RPRLCHLRKG 2f0aA 252 :IITVTLNMEK T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRD T0340 75 :REDEARLLVVG 2f0aA 330 :KPGPIVLTVAK Number of specific fragments extracted= 5 number of extra gaps= 1 total=1868 Number of alignments=507 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHLRKG 2f0aA 252 :IITVTLNME T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRD T0340 75 :REDEARLLVVGP 2f0aA 330 :KPGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1873 Number of alignments=508 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2f0aA)M251 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 5 :PRLCHL 2f0aA 252 :IITVTL T0340 16 :GYGFNLHS 2f0aA 264 :FLGISIVG T0340 24 :DKSRPGQYIRSVDPGSPAARSG 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRD T0340 75 :REDEARLLVVGP 2f0aA 330 :KPGPIVLTVAKL Number of specific fragments extracted= 5 number of extra gaps= 1 total=1878 Number of alignments=509 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0340 13 :G 2f0aA 261 :K T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRD Number of specific fragments extracted= 4 number of extra gaps= 1 total=1882 Number of alignments=510 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f0aA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 T0340 11 :RKG 2f0aA 259 :MEK T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRDIV Number of specific fragments extracted= 4 number of extra gaps= 1 total=1886 Number of alignments=511 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 16 :GYGFNLHSDKS 2f0aA 264 :FLGISIVGQSN T0340 27 :RPGQYIRSVDPGSPAARSG 2f0aA 278 :DGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRD T0340 75 :REDEARLLVVGP 2f0aA 330 :KPGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1890 Number of alignments=512 # 2f0aA read from 2f0aA/merged-a2m # found chain 2f0aA in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f0aA)N263 Warning: unaligning (T0340)S87 because last residue in template chain is (2f0aA)E342 T0340 16 :GYGFNLHS 2f0aA 264 :FLGISIVG T0340 24 :DKSRPGQYIRSVDPGSPAARSG 2f0aA 275 :ERGDGGIYIGSIMKGGAVAADG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 2f0aA 298 :IEPGDMLLQVNDINFENMSNDDAVRVLRD T0340 75 :REDEARLLVVGP 2f0aA 330 :KPGPIVLTVAKL Number of specific fragments extracted= 4 number of extra gaps= 1 total=1894 Number of alignments=513 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n7eA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1n7eA expands to /projects/compbio/data/pdb/1n7e.pdb.gz 1n7eA:# T0340 read from 1n7eA/merged-a2m # 1n7eA read from 1n7eA/merged-a2m # adding 1n7eA to template set # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1897 Number of alignments=514 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1900 Number of alignments=515 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1903 Number of alignments=516 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7eA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1906 Number of alignments=517 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1909 Number of alignments=518 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1912 Number of alignments=519 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7eA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1915 Number of alignments=520 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7eA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQT Number of specific fragments extracted= 3 number of extra gaps= 0 total=1918 Number of alignments=521 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1921 Number of alignments=522 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1924 Number of alignments=523 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7eA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1927 Number of alignments=524 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7eA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1930 Number of alignments=525 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 32 :IRSVDPGSPAARSG 1n7eA 698 :ISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVV 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAI Number of specific fragments extracted= 2 number of extra gaps= 0 total=1932 Number of alignments=526 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 29 :GQYIRSVDPGSPAARSG 1n7eA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIK 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=1934 Number of alignments=527 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRP 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7eA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQT T0340 88 :TRL 1n7eA 759 :ASS Number of specific fragments extracted= 4 number of extra gaps= 0 total=1938 Number of alignments=528 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRP 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7eA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQT T0340 88 :TRL 1n7eA 759 :ASS Number of specific fragments extracted= 4 number of extra gaps= 0 total=1942 Number of alignments=529 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRP 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7eA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQT T0340 88 :TRL 1n7eA 759 :ASS Number of specific fragments extracted= 4 number of extra gaps= 0 total=1946 Number of alignments=530 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRP 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7eA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQT T0340 88 :TRL 1n7eA 759 :ASS Number of specific fragments extracted= 4 number of extra gaps= 0 total=1950 Number of alignments=531 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRP 1n7eA 670 :IYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7eA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1953 Number of alignments=532 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRP 1n7eA 670 :IYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7eA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1956 Number of alignments=533 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRP 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7eA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQT Number of specific fragments extracted= 3 number of extra gaps= 0 total=1959 Number of alignments=534 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRP 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7eA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQT T0340 88 :TR 1n7eA 758 :PA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1963 Number of alignments=535 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ T0340 87 :STRL 1n7eA 758 :PASS Number of specific fragments extracted= 4 number of extra gaps= 0 total=1967 Number of alignments=536 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ T0340 87 :STRL 1n7eA 758 :PASS Number of specific fragments extracted= 4 number of extra gaps= 0 total=1971 Number of alignments=537 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ T0340 87 :STRL 1n7eA 758 :PASS Number of specific fragments extracted= 4 number of extra gaps= 0 total=1975 Number of alignments=538 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ T0340 87 :STRL 1n7eA 758 :PASS Number of specific fragments extracted= 4 number of extra gaps= 0 total=1979 Number of alignments=539 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7eA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1982 Number of alignments=540 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7eA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1985 Number of alignments=541 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ T0340 89 :RL 1n7eA 757 :QP Number of specific fragments extracted= 4 number of extra gaps= 0 total=1989 Number of alignments=542 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ T0340 87 :STRL 1n7eA 757 :QPAS Number of specific fragments extracted= 4 number of extra gaps= 0 total=1993 Number of alignments=543 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7eA)G667 T0340 4 :R 1n7eA 668 :A T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7eA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=1997 Number of alignments=544 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7eA)G667 T0340 4 :R 1n7eA 668 :A T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7eA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=2001 Number of alignments=545 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=2004 Number of alignments=546 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK T0340 86 :PSTRL 1n7eA 757 :QPASS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2008 Number of alignments=547 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7eA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2011 Number of alignments=548 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7eA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2014 Number of alignments=549 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1n7eA)G667 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=2017 Number of alignments=550 # 1n7eA read from 1n7eA/merged-a2m # found chain 1n7eA in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 1n7eA 668 :AIIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7eA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1n7eA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=2020 Number of alignments=551 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ky9A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ky9A expands to /projects/compbio/data/pdb/1ky9.pdb.gz 1ky9A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0340 read from 1ky9A/merged-a2m # 1ky9A read from 1ky9A/merged-a2m # adding 1ky9A to template set # found chain 1ky9A in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1ky9A)I267 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1ky9A)I267 T0340 1 :SMLRPRL 1ky9A 259 :QVKRGEL T0340 10 :LRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1ky9A 268 :MGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=2022 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1ky9A)I267 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1ky9A)I267 T0340 1 :SMLRPRL 1ky9A 259 :QVKRGEL T0340 10 :LRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1ky9A 268 :MGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV Number of specific fragments extracted= 2 number of extra gaps= 1 total=2024 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1ky9A)I267 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1ky9A)I267 T0340 2 :MLRPRL 1ky9A 260 :VKRGEL T0340 10 :LRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1ky9A 268 :MGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=2026 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1ky9A)I267 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1ky9A)I267 T0340 2 :MLRPRL 1ky9A 260 :VKRGEL T0340 10 :LRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1ky9A 268 :MGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLL Number of specific fragments extracted= 2 number of extra gaps= 1 total=2028 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2028 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2028 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1ky9A)Q11 T0340 3 :LRPRLCHLRK 1ky9A 12 :MPSLAPMLEK T0340 13 :GPQGYGFNLHSDK 1ky9A 23 :MPSVVSINVEGST Number of specific fragments extracted= 2 number of extra gaps= 0 total=2030 Number of alignments=552 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1ky9A)Q11 T0340 3 :LRPRLCHLRK 1ky9A 12 :MPSLAPMLEK T0340 13 :GPQGYGFNLHSDK 1ky9A 23 :MPSVVSINVEGST Number of specific fragments extracted= 2 number of extra gaps= 0 total=2032 Number of alignments=553 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 1 :SMLRP 1ky9A 11 :QMPSL T0340 17 :YGFNLHSDK 1ky9A 27 :VSINVEGST T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1ky9A 284 :AQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF T0340 70 :ASIKAR 1ky9A 322 :AALRAQ T0340 76 :EDEARLLVVGPS 1ky9A 334 :GSKLTLGLLRDG Number of specific fragments extracted= 5 number of extra gaps= 0 total=2037 Number of alignments=554 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 1 :SMLRP 1ky9A 11 :QMPSL T0340 17 :YGFNLHSDK 1ky9A 27 :VSINVEGST T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1ky9A 284 :AQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF T0340 66 :AEVVASIKAR 1ky9A 322 :AALRAQVGTM T0340 76 :EDEARLLVVGPS 1ky9A 334 :GSKLTLGLLRDG Number of specific fragments extracted= 5 number of extra gaps= 0 total=2042 Number of alignments=555 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1ky9A 287 :GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=2043 Number of alignments=556 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1ky9A 284 :AQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=2044 Number of alignments=557 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 25 :KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1ky9A 283 :DAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF T0340 70 :ASIKAR 1ky9A 322 :AALRAQ T0340 76 :EDEARLLVVGPS 1ky9A 334 :GSKLTLGLLRDG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2047 Number of alignments=558 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 25 :KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1ky9A 283 :DAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF T0340 66 :AEVVASIKAR 1ky9A 322 :AALRAQVGTM T0340 76 :EDEARLLVVGPS 1ky9A 334 :GSKLTLGLLRDG T0340 88 :TRL 1ky9A 350 :VNL Number of specific fragments extracted= 4 number of extra gaps= 0 total=2051 Number of alignments=559 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1ky9A 11 :QMPSLAPMLEKVMPSVVSINVEGSTT T0340 27 :RPG 1ky9A 38 :NTP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2053 Number of alignments=560 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 6 :RLCHLRK 1ky9A 15 :LAPMLEK T0340 13 :GPQGYGFNLHSDKS 1ky9A 23 :MPSVVSINVEGSTT Number of specific fragments extracted= 2 number of extra gaps= 0 total=2055 Number of alignments=561 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0340)R11 because first residue in template chain is (1ky9A)Q11 T0340 12 :KGP 1ky9A 12 :MPS T0340 16 :G 1ky9A 24 :P T0340 17 :YGFNLHSDKS 1ky9A 27 :VSINVEGSTT T0340 27 :RPG 1ky9A 41 :RMP T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1ky9A 288 :AFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF T0340 66 :AEVVASIKAR 1ky9A 322 :AALRAQVGTM T0340 76 :EDEARLLVVGP 1ky9A 334 :GSKLTLGLLRD Number of specific fragments extracted= 7 number of extra gaps= 0 total=2062 Number of alignments=562 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 1 :SMLRP 1ky9A 11 :QMPSL T0340 16 :G 1ky9A 24 :P T0340 17 :YGFNLHSDKS 1ky9A 27 :VSINVEGSTT T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1ky9A 288 :AFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF T0340 66 :AEVVASIKAR 1ky9A 322 :AALRAQVGTM T0340 76 :EDEARLLVVGP 1ky9A 334 :GSKLTLGLLRD Number of specific fragments extracted= 6 number of extra gaps= 0 total=2068 Number of alignments=563 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2068 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2068 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 26 :S 1ky9A 283 :D T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1ky9A 285 :QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF T0340 66 :AEVVASIKAR 1ky9A 322 :AALRAQVGTM T0340 76 :EDEARLLVVGPST 1ky9A 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 4 number of extra gaps= 0 total=2072 Number of alignments=564 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 26 :S 1ky9A 283 :D T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1ky9A 285 :QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF T0340 66 :AEVVASIKAR 1ky9A 322 :AALRAQVGTM T0340 76 :EDEARLLVVGPS 1ky9A 334 :GSKLTLGLLRDG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2076 Number of alignments=565 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Warning: unaligning (T0340)R11 because first residue in template chain is (1ky9A)Q11 T0340 12 :KGPQGYGFNLHSDKS 1ky9A 12 :MPSLAPMLEKVMPSV T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1ky9A 285 :QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV Number of specific fragments extracted= 2 number of extra gaps= 0 total=2078 Number of alignments=566 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1ky9A 285 :QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2079 Number of alignments=567 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 10 :LRKGPQGYGFNLHSDKS 1ky9A 80 :QQQKFMALGSGVIIDAD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1ky9A 285 :QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF T0340 66 :AEVVASIKA 1ky9A 322 :AALRAQVGT T0340 75 :REDEARLLVVGPST 1ky9A 333 :VGSKLTLGLLRDGK Number of specific fragments extracted= 4 number of extra gaps= 0 total=2083 Number of alignments=568 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 5 :PRLCHLRKGPQGYG 1ky9A 87 :LGSGVIIDADKGYV T0340 19 :FNLHSDKS 1ky9A 113 :IKVQLSDG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1ky9A 285 :QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF T0340 66 :AEVVASIKA 1ky9A 322 :AALRAQVGT T0340 75 :REDEARLLVVGPST 1ky9A 333 :VGSKLTLGLLRDGK Number of specific fragments extracted= 5 number of extra gaps= 0 total=2088 Number of alignments=569 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1ky9A 287 :GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=2089 Number of alignments=570 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2089 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 25 :KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1ky9A 283 :DAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF T0340 70 :ASIKA 1ky9A 322 :AALRA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2091 Number of alignments=571 # 1ky9A read from 1ky9A/merged-a2m # found chain 1ky9A in template set T0340 24 :DKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1ky9A 282 :VDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF T0340 66 :AEVVASIKA 1ky9A 322 :AALRAQVGT T0340 75 :REDEARLLVVGPS 1ky9A 333 :VGSKLTLGLLRDG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2094 Number of alignments=572 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ky9B/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ky9B expands to /projects/compbio/data/pdb/1ky9.pdb.gz 1ky9B:# T0340 read from 1ky9B/merged-a2m # 1ky9B read from 1ky9B/merged-a2m # adding 1ky9B to template set # found chain 1ky9B in template set Warning: unaligning (T0340)R6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G79 Warning: unaligning (T0340)K12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)A86 Warning: unaligning (T0340)P14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)A86 Warning: unaligning (T0340)I72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0340 1 :SMLRP 1ky9B 46 :FQQFF T0340 8 :CHLR 1ky9B 80 :QQQK T0340 15 :QGYGFNLHSD 1ky9B 87 :LGSGVIIDAD T0340 25 :KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVAS 1ky9B 283 :DAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVG T0340 75 :REDEARLLVVGPSTRL 1ky9B 333 :VGSKLTLGLLRDGKQV Number of specific fragments extracted= 5 number of extra gaps= 0 total=2099 Number of alignments=573 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)R6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G79 Warning: unaligning (T0340)K12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)A86 Warning: unaligning (T0340)P14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)A86 Warning: unaligning (T0340)I72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0340 1 :SMLRP 1ky9B 46 :FQQFF T0340 8 :CHLR 1ky9B 80 :QQQK T0340 15 :QGYGFNLHSD 1ky9B 87 :LGSGVIIDAD T0340 25 :KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVAS 1ky9B 283 :DAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVG T0340 75 :REDEARLLVVGPSTRL 1ky9B 333 :VGSKLTLGLLRDGKQV Number of specific fragments extracted= 5 number of extra gaps= 0 total=2104 Number of alignments=574 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)R6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G79 Warning: unaligning (T0340)K12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)A86 Warning: unaligning (T0340)P14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)A86 Warning: unaligning (T0340)I72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0340 2 :MLRP 1ky9B 47 :QQFF T0340 8 :CHLR 1ky9B 80 :QQQK T0340 15 :QGYGFNLHSD 1ky9B 87 :LGSGVIIDAD T0340 25 :KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVAS 1ky9B 283 :DAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVG T0340 75 :REDEARLLVV 1ky9B 333 :VGSKLTLGLL Number of specific fragments extracted= 5 number of extra gaps= 0 total=2109 Number of alignments=575 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)R6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G79 Warning: unaligning (T0340)K12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)A86 Warning: unaligning (T0340)P14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)A86 Warning: unaligning (T0340)I72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0340 4 :RP 1ky9B 49 :FF T0340 8 :CHLR 1ky9B 80 :QQQK T0340 15 :QGYGFNLHSD 1ky9B 87 :LGSGVIIDAD T0340 25 :KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVAS 1ky9B 283 :DAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVG T0340 75 :REDEARLLVVGP 1ky9B 333 :VGSKLTLGLLRD Number of specific fragments extracted= 5 number of extra gaps= 0 total=2114 Number of alignments=576 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1ky9B 384 :GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=2115 Number of alignments=577 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1ky9B 381 :KDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=2116 Number of alignments=578 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)R4 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0340)C8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)L19 Warning: unaligning (T0340)L10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)L19 Warning: unaligning (T0340)P14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P24 Warning: unaligning (T0340)T88 because last residue in template chain is (1ky9B)L446 T0340 5 :PRL 1ky9B 14 :SLA T0340 11 :RK 1ky9B 20 :EK T0340 15 :QGYGFNLHSDK 1ky9B 25 :SVVSINVEGST T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 381 :KDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN T0340 65 :HAEVVASIKAREDEARLLVVGPS 1ky9B 418 :IAELRKVLDSKPSVLALNIQRGD Number of specific fragments extracted= 5 number of extra gaps= 0 total=2121 Number of alignments=579 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)R4 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0340)C8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)L19 Warning: unaligning (T0340)L10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)L19 Warning: unaligning (T0340)P14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P24 T0340 5 :PRL 1ky9B 14 :SLA T0340 11 :RK 1ky9B 20 :EK T0340 15 :QGYGFNLHSDK 1ky9B 25 :SVVSINVEGST T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 381 :KDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN T0340 65 :HAEVVASIKAREDEARLLVVGPS 1ky9B 418 :IAELRKVLDSKPSVLALNIQRGD Number of specific fragments extracted= 5 number of extra gaps= 0 total=2126 Number of alignments=580 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)L3 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0340)T88 because last residue in template chain is (1ky9B)L446 T0340 4 :RP 1ky9B 14 :SL T0340 17 :YGFNLHSDK 1ky9B 27 :VSINVEGST T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 381 :KDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN T0340 65 :HAEVVASIKAREDEARLLVVGPS 1ky9B 418 :IAELRKVLDSKPSVLALNIQRGD Number of specific fragments extracted= 4 number of extra gaps= 0 total=2130 Number of alignments=581 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)L3 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0340)T88 because last residue in template chain is (1ky9B)L446 T0340 4 :RP 1ky9B 14 :SL T0340 17 :YGFNLHSDK 1ky9B 27 :VSINVEGST T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 284 :AQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS T0340 65 :HAEVVASIK 1ky9B 321 :FAALRAQVG T0340 76 :EDEARLLVVGPS 1ky9B 334 :GSKLTLGLLRDG Number of specific fragments extracted= 5 number of extra gaps= 0 total=2135 Number of alignments=582 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)I72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVAS 1ky9B 287 :GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVG T0340 75 :REDEARLLVVGPS 1ky9B 333 :VGSKLTLGLLRDG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2137 Number of alignments=583 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)I72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVAS 1ky9B 284 :AQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVG T0340 75 :REDEARLLVVGPS 1ky9B 333 :VGSKLTLGLLRDG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2139 Number of alignments=584 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)F19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G269 Warning: unaligning (T0340)L21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)G269 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0340 18 :G 1ky9B 266 :G T0340 22 :HSDK 1ky9B 270 :TELN T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 284 :AQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS T0340 65 :HAEVVASIK 1ky9B 321 :FAALRAQVG T0340 76 :EDEARLLVVGPS 1ky9B 334 :GSKLTLGLLRDG Number of specific fragments extracted= 5 number of extra gaps= 0 total=2144 Number of alignments=585 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)L21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G269 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)G269 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0340 24 :DK 1ky9B 270 :TE T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 284 :AQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS T0340 65 :HAEVVASIK 1ky9B 321 :FAALRAQVG T0340 76 :EDEARLLVVGPS 1ky9B 334 :GSKLTLGLLRDG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2148 Number of alignments=586 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)L3 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0340)L7 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)L19 Warning: unaligning (T0340)H9 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)L19 Warning: unaligning (T0340)K12 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P24 Warning: unaligning (T0340)P14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P24 Warning: unaligning (T0340)T88 because last residue in template chain is (1ky9B)L446 T0340 4 :RPR 1ky9B 14 :SLA T0340 10 :LR 1ky9B 20 :EK T0340 15 :QGYGFNLHSDKS 1ky9B 25 :SVVSINVEGSTT T0340 27 :RPG 1ky9B 38 :NTP T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 385 :VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN T0340 65 :HAEVVASIKAREDEARLLVVGP 1ky9B 418 :IAELRKVLDSKPSVLALNIQRG T0340 87 :S 1ky9B 445 :L Number of specific fragments extracted= 7 number of extra gaps= 0 total=2155 Number of alignments=587 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)C8 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)L19 Warning: unaligning (T0340)L10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)L19 Warning: unaligning (T0340)P14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P24 Warning: unaligning (T0340)T88 because last residue in template chain is (1ky9B)L446 T0340 6 :RL 1ky9B 15 :LA T0340 11 :RK 1ky9B 20 :EK T0340 15 :QGYGFNLHSDKS 1ky9B 25 :SVVSINVEGSTT T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 385 :VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN T0340 65 :HAEVVASIKAREDEARLLVVGP 1ky9B 418 :IAELRKVLDSKPSVLALNIQRG Number of specific fragments extracted= 5 number of extra gaps= 0 total=2160 Number of alignments=588 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)G13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P24 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P43 Warning: unaligning (T0340)T88 because last residue in template chain is (1ky9B)L446 T0340 14 :P 1ky9B 14 :S T0340 17 :YGFNLHSDKS 1ky9B 27 :VSINVEGSTT T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 385 :VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN T0340 65 :HAEVVASIKAREDEARLLVVGP 1ky9B 418 :IAELRKVLDSKPSVLALNIQRG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2164 Number of alignments=589 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)L3 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0340)Q15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P24 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P43 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0340 4 :RP 1ky9B 14 :SL T0340 16 :G 1ky9B 25 :S T0340 17 :YGFNLHSDKS 1ky9B 27 :VSINVEGSTT T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 288 :AFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS T0340 65 :HAEVVASIK 1ky9B 321 :FAALRAQVG T0340 76 :EDEARLLVVGP 1ky9B 334 :GSKLTLGLLRD Number of specific fragments extracted= 6 number of extra gaps= 0 total=2170 Number of alignments=590 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)H22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)S377 T0340 23 :SDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 378 :NKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN T0340 65 :HAEVVASIKAREDEARLLVVGP 1ky9B 418 :IAELRKVLDSKPSVLALNIQRG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2172 Number of alignments=591 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)H22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)S377 T0340 23 :SDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 378 :NKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN T0340 65 :HAEVVASIKAREDEARLLVVGP 1ky9B 418 :IAELRKVLDSKPSVLALNIQRG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2174 Number of alignments=592 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 1ky9B 285 :QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS T0340 64 :RHAEVVASIK 1ky9B 320 :SFAALRAQVG T0340 76 :EDEARLLVVGPST 1ky9B 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2177 Number of alignments=593 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)L21 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)G269 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)G269 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0340 24 :DKS 1ky9B 270 :TEL T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 285 :QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS T0340 65 :HAEVVASIK 1ky9B 321 :FAALRAQVG T0340 76 :EDEARLLVVGPST 1ky9B 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 4 number of extra gaps= 0 total=2181 Number of alignments=594 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)G13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P13 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)L19 Warning: unaligning (T0340)F19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)L19 Warning: unaligning (T0340)H22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P24 Warning: unaligning (T0340)D24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P24 Warning: unaligning (T0340)I72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0340 14 :PQG 1ky9B 14 :SLA T0340 20 :NL 1ky9B 20 :EK T0340 25 :KS 1ky9B 25 :SV T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVAS 1ky9B 285 :QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVG T0340 75 :REDEARLLVVGPSTRL 1ky9B 333 :VGSKLTLGLLRDGKQV Number of specific fragments extracted= 5 number of extra gaps= 0 total=2186 Number of alignments=595 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)I72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVAS 1ky9B 285 :QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVG T0340 75 :REDEARLLVVGPSTRL 1ky9B 333 :VGSKLTLGLLRDGKQV Number of specific fragments extracted= 2 number of extra gaps= 0 total=2188 Number of alignments=596 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)P14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)A86 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)A86 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0340 10 :LRKG 1ky9B 80 :QQQK T0340 17 :YGFNLHSDKS 1ky9B 87 :LGSGVIIDAD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 1ky9B 285 :QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS T0340 64 :RHAEVVASIK 1ky9B 320 :SFAALRAQVG T0340 75 :REDEARLLVVGPS 1ky9B 333 :VGSKLTLGLLRDG T0340 89 :R 1ky9B 346 :K Number of specific fragments extracted= 6 number of extra gaps= 0 total=2194 Number of alignments=597 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)R4 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)A86 Warning: unaligning (T0340)R6 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)A86 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 T0340 7 :L 1ky9B 87 :L T0340 8 :CHLRKGPQGYG 1ky9B 90 :GVIIDADKGYV T0340 19 :FNLHSDKS 1ky9B 113 :IKVQLSDG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 285 :QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS T0340 65 :HAEVVASIK 1ky9B 321 :FAALRAQVG T0340 76 :EDEARLLVVGPST 1ky9B 334 :GSKLTLGLLRDGK Number of specific fragments extracted= 6 number of extra gaps= 0 total=2200 Number of alignments=598 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Warning: unaligning (T0340)I72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ky9B)P332 Warning: unaligning (T0340)A74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ky9B)P332 T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVAS 1ky9B 287 :GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVG T0340 75 :REDEARLLVV 1ky9B 333 :VGSKLTLGLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2202 Number of alignments=599 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2202 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set T0340 25 :KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 283 :DAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS T0340 65 :HAEVVASI 1ky9B 321 :FAALRAQV Number of specific fragments extracted= 2 number of extra gaps= 0 total=2204 Number of alignments=600 # 1ky9B read from 1ky9B/merged-a2m # found chain 1ky9B in template set T0340 25 :KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1ky9B 283 :DAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS T0340 65 :HAEVVASIK 1ky9B 321 :FAALRAQVG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2206 Number of alignments=601 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zokA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zokA expands to /projects/compbio/data/pdb/1zok.pdb.gz 1zokA:# T0340 read from 1zokA/merged-a2m # 1zokA read from 1zokA/merged-a2m # adding 1zokA to template set # found chain 1zokA in template set T0340 10 :LRKGPQGYGFNLHSDKSRP 1zokA 227 :LERGNSGLGFSIAGGTDNP T0340 29 :GQYIRSVDPGSPAARSG 1zokA 252 :SIFITKIITGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 1zokA 270 :LRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYV Number of specific fragments extracted= 3 number of extra gaps= 0 total=2209 Number of alignments=602 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set T0340 9 :HLRKGPQGYGFNLHSDKSRPG 1zokA 226 :TLERGNSGLGFSIAGGTDNPH T0340 30 :QYIRSVDPGSPAARSG 1zokA 253 :IFITKIITGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 1zokA 270 :LRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYV Number of specific fragments extracted= 3 number of extra gaps= 0 total=2212 Number of alignments=603 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1zokA)E221 Warning: unaligning (T0340)R89 because last residue in template chain is (1zokA)F313 T0340 5 :PRLCHLRKGPQGYGFNLHSDK 1zokA 222 :YEEITLERGNSGLGFSIAGGT T0340 26 :SRPGQYIRSVDPGSPAARSG 1zokA 249 :DDSSIFITKIITGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1zokA 270 :LRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2215 Number of alignments=604 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0340)R89 because last residue in template chain is (1zokA)F313 T0340 5 :PRLCHLRKGPQGYGFNLHSDK 1zokA 222 :YEEITLERGNSGLGFSIAGGT T0340 26 :SRPGQYIRSVDPGSPAARSG 1zokA 249 :DDSSIFITKIITGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1zokA 270 :LRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2218 Number of alignments=605 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1zokA)E221 T0340 5 :PRLCHLRKGPQGYGFNLHSDK 1zokA 222 :YEEITLERGNSGLGFSIAGGT T0340 26 :SRPGQYIRSVDPGSPAARSG 1zokA 249 :DDSSIFITKIITGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1zokA 270 :LRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2221 Number of alignments=606 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set T0340 6 :RLCHLRKGPQGYGFNLHSDK 1zokA 223 :EEITLERGNSGLGFSIAGGT T0340 26 :SRPGQYIRSVDPGSPAARSG 1zokA 249 :DDSSIFITKIITGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1zokA 270 :LRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRR Number of specific fragments extracted= 3 number of extra gaps= 0 total=2224 Number of alignments=607 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1zokA)E221 Warning: unaligning (T0340)R89 because last residue in template chain is (1zokA)F313 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1zokA 222 :YEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1zokA 250 :DSSIFITKIITGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1zokA 270 :LRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2227 Number of alignments=608 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0340)R89 because last residue in template chain is (1zokA)F313 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1zokA 222 :YEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1zokA 250 :DSSIFITKIITGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1zokA 270 :LRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2230 Number of alignments=609 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1zokA)E221 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1zokA 222 :YEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1zokA 250 :DSSIFITKIITGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1zokA 270 :LRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRR Number of specific fragments extracted= 3 number of extra gaps= 0 total=2233 Number of alignments=610 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1zokA 222 :YEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1zokA 250 :DSSIFITKIITGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1zokA 270 :LRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRR Number of specific fragments extracted= 3 number of extra gaps= 0 total=2236 Number of alignments=611 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1zokA)E221 Warning: unaligning (T0340)R89 because last residue in template chain is (1zokA)F313 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1zokA 222 :YEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1zokA 250 :DSSIFITKIITGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1zokA 270 :LRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2239 Number of alignments=612 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1zokA)E221 Warning: unaligning (T0340)R89 because last residue in template chain is (1zokA)F313 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1zokA 222 :YEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1zokA 250 :DSSIFITKIITGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1zokA 270 :LRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRRKA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2242 Number of alignments=613 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1zokA)E221 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1zokA 222 :YEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1zokA 250 :DSSIFITKIITGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1zokA 270 :LRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVK Number of specific fragments extracted= 3 number of extra gaps= 0 total=2245 Number of alignments=614 # 1zokA read from 1zokA/merged-a2m # found chain 1zokA in template set T0340 6 :RLCHLRKGPQGYGFNLHSDKS 1zokA 223 :EEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1zokA 250 :DSSIFITKIITGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1zokA 270 :LRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRR Number of specific fragments extracted= 3 number of extra gaps= 0 total=2248 Number of alignments=615 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1mfgA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1mfgA/merged-a2m # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0340)R89 because last residue in template chain is (1mfgA)S1371 T0340 3 :LRPRLCHLRKGP 1mfgA 1278 :SMEIRVRVEKDP T0340 16 :GYGFNLHSDK 1mfgA 1290 :ELGFSISGGV T0340 26 :SRPGQYIRSVDPGSPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0340 43 :RSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPST 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2254 Number of alignments=616 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0340)R89 because last residue in template chain is (1mfgA)S1371 T0340 3 :LRPRLCHLRKGP 1mfgA 1278 :SMEIRVRVEKDP T0340 16 :GYGFNLHSDK 1mfgA 1290 :ELGFSISGGV T0340 26 :SRPGQYIRSVDPGSPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0340 43 :RSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPST 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2260 Number of alignments=617 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 3 :LRPRLCHLRKGP 1mfgA 1278 :SMEIRVRVEKDP T0340 16 :GYGFNLHSDK 1mfgA 1290 :ELGFSISGGV T0340 26 :SRPGQYIRSVDPGSPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0340 43 :RSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGP 1mfgA 1365 :IVRE Number of specific fragments extracted= 6 number of extra gaps= 2 total=2266 Number of alignments=618 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 4 :RPRLCHLRKGP 1mfgA 1279 :MEIRVRVEKDP T0340 16 :GYGFNLHSDK 1mfgA 1290 :ELGFSISGGV T0340 26 :SRPGQYIRSVDPGSPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0340 43 :RSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPS 1mfgA 1365 :IVREV Number of specific fragments extracted= 6 number of extra gaps= 2 total=2272 Number of alignments=619 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0340)R89 because last residue in template chain is (1mfgA)S1371 T0340 3 :LRPRLCHLRKGPQ 1mfgA 1278 :SMEIRVRVEKDPE T0340 17 :YGFNLHSDKS 1mfgA 1291 :LGFSISGGVG T0340 27 :RPGQYIRSVDPGSPA 1mfgA 1310 :DDGIFVTRVQPEGPA T0340 43 :RSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPST 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2278 Number of alignments=620 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0340)R89 because last residue in template chain is (1mfgA)S1371 T0340 3 :LRPRLCHLRKGPQ 1mfgA 1278 :SMEIRVRVEKDPE T0340 17 :YGFNLHSDKS 1mfgA 1291 :LGFSISGGVG T0340 27 :RPGQYIRSVDPGSPA 1mfgA 1310 :DDGIFVTRVQPEGPA T0340 43 :RSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPST 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2284 Number of alignments=621 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 5 :PRLCHLRKGPQ 1mfgA 1280 :EIRVRVEKDPE T0340 17 :YGFNLHSDKS 1mfgA 1291 :LGFSISGGVG T0340 27 :RPGQYIRSVDPGSPA 1mfgA 1310 :DDGIFVTRVQPEGPA T0340 43 :RSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGP 1mfgA 1365 :IVRE Number of specific fragments extracted= 6 number of extra gaps= 2 total=2290 Number of alignments=622 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 5 :PRLCHLRKGPQ 1mfgA 1280 :EIRVRVEKDPE T0340 17 :YGFNLHSDKS 1mfgA 1291 :LGFSISGGVG T0340 27 :RPGQYIRSVDPGSPA 1mfgA 1310 :DDGIFVTRVQPEGPA T0340 43 :RSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPS 1mfgA 1365 :IVREV Number of specific fragments extracted= 6 number of extra gaps= 2 total=2296 Number of alignments=623 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)A79 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)V83 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 1 :SM 1mfgA 1277 :GS T0340 5 :PRLCHLRKGPQGYGFNLHSDKSR 1mfgA 1279 :MEIRVRVEKDPELGFSISGGVGG T0340 28 :PGQYIRSVDPGSPA 1mfgA 1311 :DGIFVTRVQPEGPA T0340 43 :RSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTF T0340 77 :D 1mfgA 1358 :Q T0340 80 :RL 1mfgA 1361 :VE T0340 84 :VGPSTRL 1mfgA 1365 :IVREVSS Number of specific fragments extracted= 7 number of extra gaps= 2 total=2303 Number of alignments=624 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 1 :SM 1mfgA 1277 :GS T0340 5 :PRLCHLRKGPQGYGFNLHSDKSR 1mfgA 1279 :MEIRVRVEKDPELGFSISGGVGG T0340 28 :PGQYIRSVDPGSPA 1mfgA 1311 :DGIFVTRVQPEGPA T0340 43 :RSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPS 1mfgA 1365 :IVREV T0340 89 :RL 1mfgA 1370 :SS Number of specific fragments extracted= 7 number of extra gaps= 2 total=2310 Number of alignments=625 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 5 :PRLCHLRKGPQGYGFNLHSDKSR 1mfgA 1279 :MEIRVRVEKDPELGFSISGGVGG T0340 28 :PGQYIRSVDPGSPA 1mfgA 1311 :DGIFVTRVQPEGPA T0340 43 :RSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VV 1mfgA 1365 :IV Number of specific fragments extracted= 5 number of extra gaps= 2 total=2315 Number of alignments=626 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 5 :PRLCHLRKGPQGYGFNLHSDKSR 1mfgA 1279 :MEIRVRVEKDPELGFSISGGVGG T0340 28 :PGQYIRSVDPGSPA 1mfgA 1311 :DGIFVTRVQPEGPA T0340 43 :RSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1325 :SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VV 1mfgA 1365 :IV Number of specific fragments extracted= 5 number of extra gaps= 2 total=2320 Number of alignments=627 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 29 :GQYIRSVDPGSPAARS 1mfgA 1312 :GIFVTRVQPEGPASKL T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VV 1mfgA 1365 :IV Number of specific fragments extracted= 4 number of extra gaps= 2 total=2324 Number of alignments=628 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 16 :GYGFNLHSD 1mfgA 1301 :GRGNPFRPD T0340 27 :RPGQYIRSVDPGSPAAR 1mfgA 1310 :DDGIFVTRVQPEGPASK T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1327 :LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VV 1mfgA 1365 :IV Number of specific fragments extracted= 5 number of extra gaps= 2 total=2329 Number of alignments=629 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 1 :SMLRPR 1mfgA 1277 :GSMEIR T0340 8 :CHLRKGPQ 1mfgA 1283 :VRVEKDPE T0340 17 :YGFNLHSDK 1mfgA 1291 :LGFSISGGV T0340 26 :SRPGQYIRSVDPGSPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0340 44 :SG 1mfgA 1325 :SK T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGP 1mfgA 1365 :IVRE T0340 88 :TRL 1mfgA 1369 :VSS Number of specific fragments extracted= 9 number of extra gaps= 2 total=2338 Number of alignments=630 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 1 :SMLRPR 1mfgA 1277 :GSMEIR T0340 8 :CHLRKG 1mfgA 1283 :VRVEKD T0340 15 :QGYGFNLHSDK 1mfgA 1289 :PELGFSISGGV T0340 26 :SRPGQYIRSVDPGSPAA 1mfgA 1309 :DDDGIFVTRVQPEGPAS T0340 45 :G 1mfgA 1326 :K T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGP 1mfgA 1365 :IVRE T0340 88 :TRL 1mfgA 1369 :VSS Number of specific fragments extracted= 9 number of extra gaps= 2 total=2347 Number of alignments=631 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 3 :LRPRLCHLRKGP 1mfgA 1278 :SMEIRVRVEKDP T0340 16 :GYGFNLHSDK 1mfgA 1290 :ELGFSISGGV T0340 26 :SRPGQYIRSVDPGSPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0340 44 :SG 1mfgA 1325 :SK T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGP 1mfgA 1365 :IVRE T0340 88 :TRL 1mfgA 1369 :VSS Number of specific fragments extracted= 8 number of extra gaps= 2 total=2355 Number of alignments=632 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 3 :LRPRLCHLRKGPQ 1mfgA 1278 :SMEIRVRVEKDPE T0340 17 :YGFNLHSDK 1mfgA 1291 :LGFSISGGV T0340 26 :SRPGQYIRSVDPGSPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0340 44 :SG 1mfgA 1325 :SK T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPS 1mfgA 1365 :IVREV T0340 89 :RL 1mfgA 1370 :SS Number of specific fragments extracted= 8 number of extra gaps= 2 total=2363 Number of alignments=633 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 11 :RKGPQGYGFNLHSDK 1mfgA 1285 :VEKDPELGFSISGGV T0340 26 :SRPGQYIRSVDPGSPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0340 44 :SG 1mfgA 1325 :SK T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVG 1mfgA 1365 :IVR Number of specific fragments extracted= 6 number of extra gaps= 2 total=2369 Number of alignments=634 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 8 :CHLRKG 1mfgA 1283 :VRVEKD T0340 15 :QGYGFNLHSDK 1mfgA 1289 :PELGFSISGGV T0340 26 :SRPGQYIRSVDPGSPAA 1mfgA 1309 :DDDGIFVTRVQPEGPAS T0340 45 :G 1mfgA 1326 :K T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVG 1mfgA 1365 :IVR Number of specific fragments extracted= 7 number of extra gaps= 2 total=2376 Number of alignments=635 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 3 :LRPRLCHLRKGP 1mfgA 1278 :SMEIRVRVEKDP T0340 16 :GYGFNLHSDK 1mfgA 1290 :ELGFSISGGV T0340 26 :SRPGQYIRSVDPGSPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0340 44 :SG 1mfgA 1325 :SK T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPST 1mfgA 1365 :IVREVS Number of specific fragments extracted= 7 number of extra gaps= 2 total=2383 Number of alignments=636 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0340)R89 because last residue in template chain is (1mfgA)S1371 T0340 3 :LRPRLCHLRKGPQ 1mfgA 1278 :SMEIRVRVEKDPE T0340 17 :YGFNLHSDK 1mfgA 1291 :LGFSISGGV T0340 26 :SRPGQYIRSVDPGSPA 1mfgA 1309 :DDDGIFVTRVQPEGPA T0340 44 :SG 1mfgA 1325 :SK T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPST 1mfgA 1365 :IVREVS Number of specific fragments extracted= 7 number of extra gaps= 2 total=2390 Number of alignments=637 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0340)S87 because last residue in template chain is (1mfgA)S1371 T0340 1 :SMLRPR 1mfgA 1277 :GSMEIR T0340 9 :HLRKGPQGYGFNLHSDKS 1mfgA 1283 :VRVEKDPELGFSISGGVG T0340 27 :RPGQYIRSVDPGSPAARS 1mfgA 1310 :DDGIFVTRVQPEGPASKL T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGP 1mfgA 1365 :IVRE Number of specific fragments extracted= 6 number of extra gaps= 2 total=2396 Number of alignments=638 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 1 :SMLRPRL 1mfgA 1277 :GSMEIRV T0340 9 :HLR 1mfgA 1284 :RVE T0340 13 :GPQGYGFNLHSDKS 1mfgA 1287 :KDPELGFSISGGVG T0340 27 :RPGQYIRSVDPGSPAAR 1mfgA 1310 :DDGIFVTRVQPEGPASK T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGP 1mfgA 1365 :IVRE Number of specific fragments extracted= 7 number of extra gaps= 2 total=2403 Number of alignments=639 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 3 :LRPRLCHLRKGP 1mfgA 1278 :SMEIRVRVEKDP T0340 16 :GYGFNLHSDKS 1mfgA 1290 :ELGFSISGGVG T0340 27 :RPGQYIRSVDPGSPAAR 1mfgA 1310 :DDGIFVTRVQPEGPASK T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGP 1mfgA 1365 :IVRE T0340 88 :TRL 1mfgA 1369 :VSS Number of specific fragments extracted= 7 number of extra gaps= 2 total=2410 Number of alignments=640 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 3 :LRPRLCHLRKGP 1mfgA 1278 :SMEIRVRVEKDP T0340 16 :GYGFNLHSDKS 1mfgA 1290 :ELGFSISGGVG T0340 27 :RPGQYIRSVDPGSPAA 1mfgA 1310 :DDGIFVTRVQPEGPAS T0340 45 :G 1mfgA 1326 :K T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGP 1mfgA 1365 :IVRE T0340 88 :TRL 1mfgA 1369 :VSS Number of specific fragments extracted= 8 number of extra gaps= 2 total=2418 Number of alignments=641 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 5 :PRLCHLRKGPQG 1mfgA 1278 :SMEIRVRVEKDP T0340 17 :YGFNLHSDKS 1mfgA 1291 :LGFSISGGVG T0340 27 :RPGQYIRSVDPGSPAARS 1mfgA 1310 :DDGIFVTRVQPEGPASKL T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGP 1mfgA 1365 :IVRE Number of specific fragments extracted= 6 number of extra gaps= 2 total=2424 Number of alignments=642 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 10 :LRKGPQ 1mfgA 1283 :VRVEKD T0340 16 :GYGFNLHSDKS 1mfgA 1290 :ELGFSISGGVG T0340 27 :RPGQYIRSVDPGSPAAR 1mfgA 1310 :DDGIFVTRVQPEGPASK T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGP 1mfgA 1365 :IVRE Number of specific fragments extracted= 6 number of extra gaps= 2 total=2430 Number of alignments=643 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 3 :LRPRLCHLRKGP 1mfgA 1278 :SMEIRVRVEKDP T0340 16 :GYGFNLHSDKS 1mfgA 1290 :ELGFSISGGVG T0340 27 :RPGQYIRSVDPGSPAAR 1mfgA 1310 :DDGIFVTRVQPEGPASK T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGP 1mfgA 1365 :IVRE T0340 87 :S 1mfgA 1370 :S Number of specific fragments extracted= 7 number of extra gaps= 2 total=2437 Number of alignments=644 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0340)T88 because last residue in template chain is (1mfgA)S1371 T0340 3 :LRPRLCHLRKGP 1mfgA 1278 :SMEIRVRVEKDP T0340 16 :GYGFNLHSDKS 1mfgA 1290 :ELGFSISGGVG T0340 27 :RPGQYIRSVDPGSPAA 1mfgA 1310 :DDGIFVTRVQPEGPAS T0340 45 :G 1mfgA 1326 :K T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGP 1mfgA 1365 :IVRE T0340 87 :S 1mfgA 1370 :S Number of specific fragments extracted= 8 number of extra gaps= 2 total=2445 Number of alignments=645 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0340)R89 because last residue in template chain is (1mfgA)S1371 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1mfgA 1278 :SMEIRVRVEKDPELGFSISGGVG T0340 27 :RPGQYIRSVDPGSPAARS 1mfgA 1310 :DDGIFVTRVQPEGPASKL T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPST 1mfgA 1365 :IVREVS Number of specific fragments extracted= 5 number of extra gaps= 2 total=2450 Number of alignments=646 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0340)R89 because last residue in template chain is (1mfgA)S1371 T0340 1 :SMLRPR 1mfgA 1277 :GSMEIR T0340 9 :HLRKGPQGYGFNLHSDKS 1mfgA 1283 :VRVEKDPELGFSISGGVG T0340 27 :RPGQYIRSVDPGSPAARS 1mfgA 1310 :DDGIFVTRVQPEGPASKL T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPST 1mfgA 1365 :IVREVS Number of specific fragments extracted= 6 number of extra gaps= 2 total=2456 Number of alignments=647 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0340)R89 because last residue in template chain is (1mfgA)S1371 T0340 3 :LRPRLCHLRKGPQG 1mfgA 1278 :SMEIRVRVEKDPEL T0340 18 :GFNLHSDKS 1mfgA 1292 :GFSISGGVG T0340 27 :RPGQYIRSVDPGSPAA 1mfgA 1310 :DDGIFVTRVQPEGPAS T0340 45 :G 1mfgA 1326 :K T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPST 1mfgA 1365 :IVREVS Number of specific fragments extracted= 7 number of extra gaps= 2 total=2463 Number of alignments=648 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0340)R89 because last residue in template chain is (1mfgA)S1371 T0340 3 :LRPRLCHLRKGPQ 1mfgA 1278 :SMEIRVRVEKDPE T0340 17 :YGFNLHSDKS 1mfgA 1291 :LGFSISGGVG T0340 27 :RPGQYIRSVDPGSPAA 1mfgA 1310 :DDGIFVTRVQPEGPAS T0340 45 :G 1mfgA 1326 :K T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPST 1mfgA 1365 :IVREVS Number of specific fragments extracted= 7 number of extra gaps= 2 total=2470 Number of alignments=649 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 10 :LRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARS 1mfgA 1293 :FSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VV 1mfgA 1365 :IV Number of specific fragments extracted= 4 number of extra gaps= 2 total=2474 Number of alignments=650 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 8 :CHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARS 1mfgA 1291 :LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVG 1mfgA 1365 :IVR Number of specific fragments extracted= 4 number of extra gaps= 2 total=2478 Number of alignments=651 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1mfgA)G1277 Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 T0340 3 :LRPRLCHLRKGPQG 1mfgA 1278 :SMEIRVRVEKDPEL T0340 18 :GFNLHSDKS 1mfgA 1292 :GFSISGGVG T0340 27 :RPGQYIRSVDPGSPAA 1mfgA 1310 :DDGIFVTRVQPEGPAS T0340 45 :G 1mfgA 1326 :K T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPST 1mfgA 1365 :IVREVS Number of specific fragments extracted= 7 number of extra gaps= 2 total=2485 Number of alignments=652 # 1mfgA read from 1mfgA/merged-a2m # found chain 1mfgA in training set Warning: unaligning (T0340)D77 because of BadResidue code BAD_PEPTIDE in next template residue (1mfgA)T1360 Warning: unaligning (T0340)E78 because of BadResidue code BAD_PEPTIDE at template residue (1mfgA)T1360 Warning: unaligning (T0340)L81 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1mfgA)I1364 Warning: unaligning (T0340)L82 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1mfgA)I1364 Warning: unaligning (T0340)R89 because last residue in template chain is (1mfgA)S1371 T0340 3 :LRPRLCHLRKGPQ 1mfgA 1278 :SMEIRVRVEKDPE T0340 17 :YGFNLHSDKS 1mfgA 1291 :LGFSISGGVG T0340 27 :RPGQYIRSVDPGSPAA 1mfgA 1310 :DDGIFVTRVQPEGPAS T0340 45 :G 1mfgA 1326 :K T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1mfgA 1328 :LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ T0340 79 :AR 1mfgA 1361 :VE T0340 83 :VVGPST 1mfgA 1365 :IVREVS Number of specific fragments extracted= 7 number of extra gaps= 2 total=2492 Number of alignments=653 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b8qA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1b8qA expands to /projects/compbio/data/pdb/1b8q.pdb.gz 1b8qA:# T0340 read from 1b8qA/merged-a2m # 1b8qA read from 1b8qA/merged-a2m # adding 1b8qA to template set # found chain 1b8qA in template set T0340 1 :SMLRPRLCHLRKGPQ 1b8qA 5 :IEPNVISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 21 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPSTRL 1b8qA 84 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=2496 Number of alignments=654 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 1 :SMLRPRLCHLRKGPQ 1b8qA 5 :IEPNVISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 21 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPSTRL 1b8qA 84 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=2500 Number of alignments=655 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 3 :LRPRLCHLRKGPQ 1b8qA 7 :PNVISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 21 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPSTRL 1b8qA 84 :ETHVVLILRGPEGFT Number of specific fragments extracted= 4 number of extra gaps= 0 total=2504 Number of alignments=656 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 4 :RPRLCHLRKGPQ 1b8qA 8 :NVISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 21 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPST 1b8qA 84 :ETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2508 Number of alignments=657 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 4 :RPRLCHLRKG 1b8qA 8 :NVISVRLFKR T0340 14 :PQGYGFNLHSDKSRPGQYIRSVDPGSPAARS 1b8qA 19 :VGGLGFLVKERVSKPPVIISDLIRGGAAEQS T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1b8qA 51 :LIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0340 77 :DEARLLVVGPS 1b8qA 85 :THVVLILRGPE T0340 88 :TRL 1b8qA 117 :TQP Number of specific fragments extracted= 5 number of extra gaps= 0 total=2513 Number of alignments=658 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 5 :PRLCHLRKG 1b8qA 9 :VISVRLFKR T0340 14 :PQGYGFNLHSDKSRPGQYIRSVDPGSPAARS 1b8qA 19 :VGGLGFLVKERVSKPPVIISDLIRGGAAEQS T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1b8qA 51 :LIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0340 77 :DEARLLVVGP 1b8qA 85 :THVVLILRGP Number of specific fragments extracted= 4 number of extra gaps= 0 total=2517 Number of alignments=659 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGL 1b8qA 21 :GLGFLVKERVSKPPVIISDLIRGGAAEQSGL T0340 47 :RAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1b8qA 53 :QAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI Number of specific fragments extracted= 2 number of extra gaps= 0 total=2519 Number of alignments=660 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 11 :RKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGL 1b8qA 16 :KRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGL T0340 47 :RAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1b8qA 53 :QAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV Number of specific fragments extracted= 2 number of extra gaps= 0 total=2521 Number of alignments=661 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 1 :SMLRPRLCHLRKGP 1b8qA 5 :IEPNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1b8qA 84 :ETHVVLILRGPE T0340 88 :TRL 1b8qA 125 :KAV Number of specific fragments extracted= 5 number of extra gaps= 0 total=2526 Number of alignments=662 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 1 :SMLRPRLCHLRKGP 1b8qA 5 :IEPNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1b8qA 84 :ETHVVLILRGPE T0340 88 :TRL 1b8qA 125 :KAV Number of specific fragments extracted= 5 number of extra gaps= 0 total=2531 Number of alignments=663 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 1 :SMLRP 1b8qA 1 :GSHMI T0340 6 :RLCHLRKGP 1b8qA 10 :ISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1b8qA 84 :ETHVVLILRGPE T0340 88 :TRL 1b8qA 125 :KAV Number of specific fragments extracted= 6 number of extra gaps= 0 total=2537 Number of alignments=664 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 1 :SMLRP 1b8qA 1 :GSHMI T0340 6 :RLCHLRKGP 1b8qA 10 :ISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1b8qA 84 :ETHVVLILRGPE T0340 88 :TRL 1b8qA 125 :KAV Number of specific fragments extracted= 6 number of extra gaps= 0 total=2543 Number of alignments=665 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 2 :MLRPRLCHLRKGP 1b8qA 6 :EPNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1b8qA 84 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2547 Number of alignments=666 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 3 :LRPRLCHLRKGP 1b8qA 7 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1b8qA 84 :ETHVVLILRGP Number of specific fragments extracted= 4 number of extra gaps= 0 total=2551 Number of alignments=667 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 4 :RPRLCHLRKGP 1b8qA 8 :NVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1b8qA 84 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2555 Number of alignments=668 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 4 :RPRLCHLRKGP 1b8qA 8 :NVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1b8qA 84 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2559 Number of alignments=669 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 1 :SMLRPRLCHLRKGP 1b8qA 5 :IEPNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1b8qA 84 :ETHVVLILRGP T0340 87 :STRL 1b8qA 124 :TKAV Number of specific fragments extracted= 5 number of extra gaps= 0 total=2564 Number of alignments=670 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 1 :SMLRPRLCHLRKGP 1b8qA 5 :IEPNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1b8qA 84 :ETHVVLILRGP T0340 87 :STRL 1b8qA 124 :TKAV Number of specific fragments extracted= 5 number of extra gaps= 0 total=2569 Number of alignments=671 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 1 :SMLRP 1b8qA 1 :GSHMI T0340 6 :RLCHLRKGP 1b8qA 10 :ISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1b8qA 84 :ETHVVLILRGP T0340 87 :STRL 1b8qA 124 :TKAV Number of specific fragments extracted= 6 number of extra gaps= 0 total=2575 Number of alignments=672 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 1 :SMLRP 1b8qA 1 :GSHMI T0340 6 :RLCHLRKGP 1b8qA 10 :ISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1b8qA 84 :ETHVVLILRGP T0340 87 :STRL 1b8qA 124 :TKAV Number of specific fragments extracted= 6 number of extra gaps= 0 total=2581 Number of alignments=673 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 2 :MLRPRLCHLRKGP 1b8qA 6 :EPNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1b8qA 84 :ETHVVLILRGP Number of specific fragments extracted= 4 number of extra gaps= 0 total=2585 Number of alignments=674 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 3 :LRPRLCHLRKGP 1b8qA 7 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1b8qA 84 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2589 Number of alignments=675 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 3 :LRPRLCHLRKGP 1b8qA 7 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPSTR 1b8qA 84 :ETHVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=2593 Number of alignments=676 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 2 :MLRP 1b8qA 2 :SHMI T0340 6 :RLCHLRKGP 1b8qA 10 :ISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 20 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1b8qA 84 :ETHVVLILRGP Number of specific fragments extracted= 5 number of extra gaps= 0 total=2598 Number of alignments=677 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 1 :S 1b8qA 1 :G T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 7 :PNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2601 Number of alignments=678 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 1 :SMLR 1b8qA 1 :GSHM T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 10 :ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2604 Number of alignments=679 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 1 :SMLRP 1b8qA 1 :GSHMI T0340 6 :RLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 11 :SVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2607 Number of alignments=680 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 1 :SMLRP 1b8qA 1 :GSHMI T0340 6 :RLCHLR 1b8qA 10 :ISVRLF T0340 12 :KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 17 :RKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2611 Number of alignments=681 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 9 :HLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 14 :LFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI Number of specific fragments extracted= 2 number of extra gaps= 0 total=2613 Number of alignments=682 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 8 :CHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 13 :RLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR Number of specific fragments extracted= 2 number of extra gaps= 0 total=2615 Number of alignments=683 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 9 :HLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 14 :LFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=2617 Number of alignments=684 # 1b8qA read from 1b8qA/merged-a2m # found chain 1b8qA in template set T0340 2 :MLRPRLCHLR 1b8qA 6 :EPNVISVRLF T0340 12 :KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1b8qA 17 :RKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 1b8qA 52 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2620 Number of alignments=685 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nteA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nteA expands to /projects/compbio/data/pdb/1nte.pdb.gz 1nteA:Skipped atom 107, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 281, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 283, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 285, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 287, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 289, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 291, because occupancy 0.400 <= existing 0.600 in 1nteA Skipped atom 332, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 334, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 336, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 338, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 340, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 373, because occupancy 0.500 <= existing 0.500 in 1nteA Skipped atom 595, because occupancy 0.300 <= existing 0.700 in 1nteA Skipped atom 597, because occupancy 0.300 <= existing 0.700 in 1nteA Skipped atom 599, because occupancy 0.300 <= existing 0.700 in 1nteA Skipped atom 601, because occupancy 0.300 <= existing 0.700 in 1nteA # T0340 read from 1nteA/merged-a2m # 1nteA read from 1nteA/merged-a2m # adding 1nteA to template set # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0340)S87 because last residue in template chain is (1nteA)F273 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSD 1nteA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2624 Number of alignments=686 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0340)S87 because last residue in template chain is (1nteA)F273 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSD 1nteA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2628 Number of alignments=687 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSD 1nteA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 1 total=2632 Number of alignments=688 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSD 1nteA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 1 total=2635 Number of alignments=689 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0340)S87 because last residue in template chain is (1nteA)F273 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGP 1nteA 196 :PRTITMHKDS T0340 15 :QGYGFNLH 1nteA 207 :GHVGFIFK T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 215 :NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2639 Number of alignments=690 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGP 1nteA 196 :PRTITMHKDS T0340 15 :QGYGFNLH 1nteA 207 :GHVGFIFK T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 215 :NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2643 Number of alignments=691 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 5 :PRLCHLRKGP 1nteA 196 :PRTITMHKDS T0340 15 :QGYGFNLH 1nteA 207 :GHVGFIFK T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1nteA 215 :NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM Number of specific fragments extracted= 3 number of extra gaps= 1 total=2646 Number of alignments=692 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 5 :PRLCHLRKGP 1nteA 196 :PRTITMHKDS T0340 15 :QGYGFNLH 1nteA 207 :GHVGFIFK T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1nteA 215 :NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 1 total=2649 Number of alignments=693 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEV 1nteA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=2650 Number of alignments=694 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set T0340 18 :GFNLHS 1nteA 210 :GFIFKN T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVA 1nteA 216 :GKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIAD Number of specific fragments extracted= 2 number of extra gaps= 0 total=2652 Number of alignments=695 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSDK 1nteA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2656 Number of alignments=696 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSDK 1nteA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2660 Number of alignments=697 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSD 1nteA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2664 Number of alignments=698 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSD 1nteA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2668 Number of alignments=699 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSDK 1nteA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1nteA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 1 total=2672 Number of alignments=700 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 2 :M 1nteA 193 :A T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSDK 1nteA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1nteA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 1 total=2676 Number of alignments=701 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSD 1nteA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2680 Number of alignments=702 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSD 1nteA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2684 Number of alignments=703 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSDK 1nteA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2688 Number of alignments=704 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSDK 1nteA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2692 Number of alignments=705 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSD 1nteA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2696 Number of alignments=706 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSD 1nteA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2700 Number of alignments=707 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSDK 1nteA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1nteA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 1 total=2704 Number of alignments=708 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 2 :M 1nteA 193 :A T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSDK 1nteA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1nteA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 4 number of extra gaps= 1 total=2708 Number of alignments=709 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSD 1nteA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2712 Number of alignments=710 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGFNLHSD 1nteA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 4 number of extra gaps= 1 total=2716 Number of alignments=711 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0340)S87 because last residue in template chain is (1nteA)F273 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQGYGFNLHSDK 1nteA 196 :PRTITMHKDSTGHVGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 1 total=2719 Number of alignments=712 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0340)S87 because last residue in template chain is (1nteA)F273 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQGYGFNLHS 1nteA 196 :PRTITMHKDSTGHVGFIFK T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 215 :NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 1 total=2722 Number of alignments=713 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0340)S87 because last residue in template chain is (1nteA)F273 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQGYGFNLHSDK 1nteA 196 :PRTITMHKDSTGHVGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 1 total=2725 Number of alignments=714 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 Warning: unaligning (T0340)S87 because last residue in template chain is (1nteA)F273 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGF 1nteA 209 :VGF T0340 22 :HSDKS 1nteA 212 :IFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 5 number of extra gaps= 1 total=2730 Number of alignments=715 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1nteA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=2731 Number of alignments=716 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set T0340 6 :RLCHLRKGPQGYGFNLH 1nteA 197 :RTITMHKDSTGHVGFIF T0340 28 :PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1nteA 214 :KNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM Number of specific fragments extracted= 2 number of extra gaps= 0 total=2733 Number of alignments=717 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 1 :SM 1nteA 192 :GA T0340 5 :PRLCHLRKGPQGYGFNLHSDK 1nteA 196 :PRTITMHKDSTGHVGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 1 total=2736 Number of alignments=718 # 1nteA read from 1nteA/merged-a2m # found chain 1nteA in template set Warning: unaligning (T0340)L3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nteA)D195 Warning: unaligning (T0340)R4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nteA)D195 T0340 2 :M 1nteA 193 :A T0340 5 :PRLCHLRKGPQG 1nteA 196 :PRTITMHKDSTG T0340 17 :YGF 1nteA 209 :VGF T0340 22 :HSDKS 1nteA 212 :IFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1nteA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 5 number of extra gaps= 1 total=2741 Number of alignments=719 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fe5A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 2fe5A/merged-a2m # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRP 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQ T0340 29 :GQYIRSVDPGSPAARSG 2fe5A 254 :SIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2744 Number of alignments=720 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRP 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQ T0340 29 :GQYIRSVDPGSPAARSG 2fe5A 254 :SIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2747 Number of alignments=721 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRP 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQ T0340 29 :GQYIRSVDPGSPAARSG 2fe5A 254 :SIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2750 Number of alignments=722 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRP 2fe5A 223 :TIMEVNLLKGPKGLGFSIAGGIGNQ T0340 29 :GQYIRSVDPGSPAARSG 2fe5A 254 :SIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2753 Number of alignments=723 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGI T0340 26 :SRPGQYIRSVDPGSPAARSG 2fe5A 251 :GDNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2756 Number of alignments=724 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGI T0340 26 :SRPGQYIRSVDPGSPAARSG 2fe5A 251 :GDNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2759 Number of alignments=725 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGI T0340 26 :SRPGQYIRSVDPGSPAARSG 2fe5A 251 :GDNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2762 Number of alignments=726 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDK 2fe5A 223 :TIMEVNLLKGPKGLGFSIAGGI T0340 26 :SRPGQYIRSVDPGSPAARSG 2fe5A 251 :GDNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2765 Number of alignments=727 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)T88 because last residue in template chain is (2fe5A)S314 T0340 1 :S 2fe5A 221 :S T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2769 Number of alignments=728 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)T88 because last residue in template chain is (2fe5A)S314 T0340 1 :S 2fe5A 221 :S T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2773 Number of alignments=729 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 2fe5A 224 :IMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2776 Number of alignments=730 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 2fe5A 224 :IMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2779 Number of alignments=731 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)T88 because last residue in template chain is (2fe5A)S314 T0340 9 :HLRKGPQGYGFNLH 2fe5A 228 :NLLKGPKGLGFSIA T0340 23 :SDKSRPGQ 2fe5A 245 :GNQHIPGD T0340 31 :YIRSVDPGSPAARSG 2fe5A 256 :YITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2783 Number of alignments=732 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0340 9 :HLRKGPQGYGFNLHS 2fe5A 228 :NLLKGPKGLGFSIAG T0340 24 :DKSRPGQ 2fe5A 246 :NQHIPGD T0340 31 :YIRSVDPGSPAARSG 2fe5A 256 :YITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 4 number of extra gaps= 0 total=2787 Number of alignments=733 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGI T0340 26 :SRPGQYIRSVDPGSPAARSG 2fe5A 251 :GDNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2790 Number of alignments=734 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGI T0340 26 :SRPGQYIRSVDPGSPAARSG 2fe5A 251 :GDNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2793 Number of alignments=735 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPG 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQH T0340 30 :QYIRSVDPGSPAARSG 2fe5A 255 :IYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP T0340 89 :RL 2fe5A 313 :GS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2797 Number of alignments=736 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGI T0340 26 :SRPGQYIRSVDPGSPAARSG 2fe5A 251 :GDNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP T0340 89 :RL 2fe5A 313 :GS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2801 Number of alignments=737 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGI T0340 26 :SRPGQYIRSVDPGSPAARSG 2fe5A 251 :GDNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2804 Number of alignments=738 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDK 2fe5A 223 :TIMEVNLLKGPKGLGFSIAGGI T0340 26 :SRPGQYIRSVDPGSPAARSG 2fe5A 251 :GDNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2807 Number of alignments=739 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPG 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQH T0340 30 :QYIRSVDPGSPAARSG 2fe5A 255 :IYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2810 Number of alignments=740 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDK 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGI T0340 26 :SRPGQYIRSVDPGSPAARSG 2fe5A 251 :GDNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2813 Number of alignments=741 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0340)S87 because last residue in template chain is (2fe5A)S314 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2816 Number of alignments=742 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0340)S87 because last residue in template chain is (2fe5A)S314 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2819 Number of alignments=743 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0340)T88 because last residue in template chain is (2fe5A)S314 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPG 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQH T0340 30 :QYIRSVDPGSPAARSG 2fe5A 255 :IYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2822 Number of alignments=744 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2825 Number of alignments=745 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2828 Number of alignments=746 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 2fe5A 223 :TIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2831 Number of alignments=747 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPG 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIGNQH T0340 30 :QYIRSVDPGSPAARSG 2fe5A 255 :IYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2834 Number of alignments=748 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2837 Number of alignments=749 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0340)T88 because last residue in template chain is (2fe5A)S314 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2840 Number of alignments=750 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0340)T88 because last residue in template chain is (2fe5A)S314 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2843 Number of alignments=751 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0340)T88 because last residue in template chain is (2fe5A)S314 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2846 Number of alignments=752 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0340)T88 because last residue in template chain is (2fe5A)S314 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2849 Number of alignments=753 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 2fe5A 224 :IMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2852 Number of alignments=754 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0340 6 :RLCHLRKGPQGYGFNLHSDKS 2fe5A 225 :MEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2855 Number of alignments=755 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (2fe5A)S221 Warning: unaligning (T0340)T88 because last residue in template chain is (2fe5A)S314 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2858 Number of alignments=756 # 2fe5A read from 2fe5A/merged-a2m # found chain 2fe5A in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKS 2fe5A 222 :MTIMEVNLLKGPKGLGFSIAGGIG T0340 27 :RPGQYIRSVDPGSPAARSG 2fe5A 252 :DNSIYITKIIEGGAAQKDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fe5A 272 :LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2861 Number of alignments=757 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1r6jA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1r6jA/merged-a2m # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0340)S87 because last residue in template chain is (1r6jA)F273 T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2864 Number of alignments=758 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0340)S87 because last residue in template chain is (1r6jA)F273 T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2867 Number of alignments=759 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2870 Number of alignments=760 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 3 :LRPRLCHLRKGPQG 1r6jA 194 :MDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2873 Number of alignments=761 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2876 Number of alignments=762 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2879 Number of alignments=763 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2882 Number of alignments=764 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 2 :MLRPRLCHLRKGPQG 1r6jA 193 :AMDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2885 Number of alignments=765 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0340)S87 because last residue in template chain is (1r6jA)F273 T0340 1 :SMLRPRLCHLRKGP 1r6jA 192 :GAMDPRTITMHKDS T0340 15 :QGYGFNLH 1r6jA 207 :GHVGFIFK T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 215 :NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2888 Number of alignments=766 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGP 1r6jA 192 :GAMDPRTITMHKDS T0340 15 :QGYGFNLH 1r6jA 207 :GHVGFIFK T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 215 :NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2891 Number of alignments=767 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 3 :LRPRLCHLRKGP 1r6jA 194 :MDPRTITMHKDS T0340 15 :QGYGFNLH 1r6jA 207 :GHVGFIFK T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1r6jA 215 :NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2894 Number of alignments=768 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 4 :RPRLCHLRKGP 1r6jA 195 :DPRTITMHKDS T0340 15 :QGYGFNLH 1r6jA 207 :GHVGFIFK T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1r6jA 215 :NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2897 Number of alignments=769 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEV 1r6jA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=2898 Number of alignments=770 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 18 :GFNLHS 1r6jA 210 :GFIFKN T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVA 1r6jA 216 :GKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIAD Number of specific fragments extracted= 2 number of extra gaps= 0 total=2900 Number of alignments=771 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSDK 1r6jA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2903 Number of alignments=772 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSDK 1r6jA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2906 Number of alignments=773 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2909 Number of alignments=774 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2912 Number of alignments=775 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSDK 1r6jA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1r6jA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2915 Number of alignments=776 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 2 :MLRPRLCHLRKGPQG 1r6jA 193 :AMDPRTITMHKDSTG T0340 17 :YGFNLHSDK 1r6jA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1r6jA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2918 Number of alignments=777 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2921 Number of alignments=778 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2924 Number of alignments=779 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSDK 1r6jA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2927 Number of alignments=780 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSDK 1r6jA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2930 Number of alignments=781 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2933 Number of alignments=782 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2936 Number of alignments=783 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSDK 1r6jA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1r6jA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2939 Number of alignments=784 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 2 :MLRPRLCHLRKGPQG 1r6jA 193 :AMDPRTITMHKDSTG T0340 17 :YGFNLHSDK 1r6jA 209 :VGFIFKNGK T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1r6jA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2942 Number of alignments=785 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2945 Number of alignments=786 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQG 1r6jA 192 :GAMDPRTITMHKDSTG T0340 17 :YGFNLHSD 1r6jA 209 :VGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2948 Number of alignments=787 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0340)S87 because last residue in template chain is (1r6jA)F273 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDK 1r6jA 192 :GAMDPRTITMHKDSTGHVGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2950 Number of alignments=788 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0340)S87 because last residue in template chain is (1r6jA)F273 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHS 1r6jA 192 :GAMDPRTITMHKDSTGHVGFIFK T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 215 :NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2952 Number of alignments=789 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0340)S87 because last residue in template chain is (1r6jA)F273 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDK 1r6jA 192 :GAMDPRTITMHKDSTGHVGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 2 number of extra gaps= 0 total=2954 Number of alignments=790 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set Warning: unaligning (T0340)S87 because last residue in template chain is (1r6jA)F273 T0340 1 :SMLRPRLCHLRK 1r6jA 192 :GAMDPRTITMHK T0340 13 :GPQGYGFNLHSD 1r6jA 205 :STGHVGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA Number of specific fragments extracted= 3 number of extra gaps= 0 total=2957 Number of alignments=791 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1r6jA 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM Number of specific fragments extracted= 1 number of extra gaps= 0 total=2958 Number of alignments=792 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 6 :RLCHLRKGPQGYGFNLH 1r6jA 197 :RTITMHKDSTGHVGFIF T0340 28 :PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1r6jA 214 :KNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM Number of specific fragments extracted= 2 number of extra gaps= 0 total=2960 Number of alignments=793 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDK 1r6jA 192 :GAMDPRTITMHKDSTGHVGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 2 number of extra gaps= 0 total=2962 Number of alignments=794 # 1r6jA read from 1r6jA/merged-a2m # found chain 1r6jA in training set T0340 2 :MLRPRLCHLRK 1r6jA 193 :AMDPRTITMHK T0340 13 :GPQGYGFNLHSD 1r6jA 205 :STGHVGFIFKNG T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1r6jA 217 :KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2965 Number of alignments=795 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qavA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1qavA/merged-a2m # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 4 :RPRLCHLRKG 1qavA 78 :QRRRVTVRKA T0340 14 :PQGYGFNLHSD 1qavA 89 :AGGLGISIKGG T0340 25 :KSRPGQYIRSVDPGSPAARS 1qavA 101 :ENKMPILISKIFKGLAADQT T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 122 :ALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=2969 Number of alignments=796 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 5 :PRLCHLRKG 1qavA 79 :RRRVTVRKA T0340 14 :PQGYGFNLHSD 1qavA 89 :AGGLGISIKGG T0340 25 :KSRPGQYIRSVDPGSPAARS 1qavA 101 :ENKMPILISKIFKGLAADQT T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 122 :ALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=2973 Number of alignments=797 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRKGP 1qavA 75 :GSLQRRRVTVRKAD T0340 15 :QGYGFNLHSDKSRP 1qavA 90 :GGLGISIKGGRENK T0340 29 :GQYIRSVDPGSPAARSG 1qavA 105 :PILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=2977 Number of alignments=798 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRKGP 1qavA 75 :GSLQRRRVTVRKAD T0340 15 :QGYGFNLHSDKS 1qavA 90 :GGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=2981 Number of alignments=799 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 1 :SMLRPRLCHLRKGP 1qavA 75 :GSLQRRRVTVRKAD T0340 15 :QGYGFNLHSDKSRP 1qavA 90 :GGLGISIKGGRENK T0340 29 :GQYIRSVDPGSPAARSG 1qavA 105 :PILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK Number of specific fragments extracted= 4 number of extra gaps= 0 total=2985 Number of alignments=800 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 4 :RPRLCHLRKGP 1qavA 78 :QRRRVTVRKAD T0340 15 :QGYGFNLHSDKS 1qavA 90 :GGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK Number of specific fragments extracted= 4 number of extra gaps= 0 total=2989 Number of alignments=801 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRK 1qavA 75 :GSLQRRRVTVRK T0340 13 :GPQGYGFNLHSDKS 1qavA 88 :DAGGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=2993 Number of alignments=802 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRK 1qavA 75 :GSLQRRRVTVRK T0340 13 :GPQGYGFNLHSDKS 1qavA 88 :DAGGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=2997 Number of alignments=803 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 3 :LRPRLCHLRK 1qavA 77 :LQRRRVTVRK T0340 13 :GPQGYGFNLHSDKS 1qavA 88 :DAGGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3001 Number of alignments=804 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 4 :RPRLCHLRK 1qavA 78 :QRRRVTVRK T0340 13 :GPQGYGFNLHSDKS 1qavA 88 :DAGGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3005 Number of alignments=805 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRKGP 1qavA 75 :GSLQRRRVTVRKAD T0340 15 :QGYGFNLHSDKS 1qavA 90 :GGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3009 Number of alignments=806 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRKGP 1qavA 75 :GSLQRRRVTVRKAD T0340 15 :QGYGFNLHSDKS 1qavA 90 :GGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3013 Number of alignments=807 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 2 :MLRPRLCHLRKGP 1qavA 76 :SLQRRRVTVRKAD T0340 15 :QGYGFNLHSDKS 1qavA 90 :GGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3017 Number of alignments=808 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 4 :RPRLCHLRKGP 1qavA 78 :QRRRVTVRKAD T0340 15 :QGYGFNLHSDKS 1qavA 90 :GGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK Number of specific fragments extracted= 4 number of extra gaps= 0 total=3021 Number of alignments=809 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=3022 Number of alignments=810 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 44 :SGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARL 1qavA 121 :EALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3023 Number of alignments=811 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRK 1qavA 75 :GSLQRRRVTVRK T0340 13 :GPQGYGFNLHSDKSRP 1qavA 88 :DAGGLGISIKGGRENK T0340 29 :GQYIRSVDPGSPAARSG 1qavA 105 :PILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3027 Number of alignments=812 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRKGP 1qavA 75 :GSLQRRRVTVRKAD T0340 15 :QGYGFNLHSDKSRP 1qavA 90 :GGLGISIKGGRENK T0340 29 :GQYIRSVDPGSPAARSG 1qavA 105 :PILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3031 Number of alignments=813 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRKGP 1qavA 75 :GSLQRRRVTVRKAD T0340 15 :QGYGFNLHSDKSRP 1qavA 90 :GGLGISIKGGRENK T0340 29 :GQYIRSVDPGSPAARSG 1qavA 105 :PILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3035 Number of alignments=814 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 1 :SMLRPRLCHLRKGPQ 1qavA 75 :GSLQRRRVTVRKADA T0340 16 :GYGFNLHSDKSRP 1qavA 91 :GLGISIKGGRENK T0340 29 :GQYIRSVDPGSPAARSG 1qavA 105 :PILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3039 Number of alignments=815 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRK 1qavA 75 :GSLQRRRVTVRK T0340 13 :GPQGYGFNLHSDKSRP 1qavA 88 :DAGGLGISIKGGRENK T0340 29 :GQYIRSVDPGSPAARSG 1qavA 105 :PILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3043 Number of alignments=816 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 3 :LRPRLCHLRKGP 1qavA 77 :LQRRRVTVRKAD T0340 15 :QGYGFNLHSDKSRP 1qavA 90 :GGLGISIKGGRENK T0340 29 :GQYIRSVDPGSPAARSG 1qavA 105 :PILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 4 number of extra gaps= 0 total=3047 Number of alignments=817 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRKGP 1qavA 75 :GSLQRRRVTVRKAD T0340 15 :QGYGFNLHSDKSRP 1qavA 90 :GGLGISIKGGRENK T0340 29 :GQYIRSVDPGSPAARSG 1qavA 105 :PILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3051 Number of alignments=818 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 2 :MLRPRLCHLRKGPQ 1qavA 76 :SLQRRRVTVRKADA T0340 16 :GYGFNLHSDKSRP 1qavA 91 :GLGISIKGGRENK T0340 29 :GQYIRSVDPGSPAARSG 1qavA 105 :PILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 4 number of extra gaps= 0 total=3055 Number of alignments=819 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRKGP 1qavA 75 :GSLQRRRVTVRKAD T0340 15 :QGYGFNLHSDKS 1qavA 90 :GGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3059 Number of alignments=820 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 1 :SMLRPRLCHLRKGP 1qavA 75 :GSLQRRRVTVRKAD T0340 15 :QGYGFNLHSDKS 1qavA 90 :GGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY T0340 89 :RL 1qavA 163 :MK Number of specific fragments extracted= 5 number of extra gaps= 0 total=3064 Number of alignments=821 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRKGP 1qavA 75 :GSLQRRRVTVRKAD T0340 15 :QGYGFNLHSDKS 1qavA 90 :GGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3068 Number of alignments=822 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 1 :SMLRPRLCHLRKGPQ 1qavA 75 :GSLQRRRVTVRKADA T0340 16 :GYGFNLHSDKS 1qavA 91 :GLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3072 Number of alignments=823 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 1 :SMLRPRLCHLRKGP 1qavA 75 :GSLQRRRVTVRKAD T0340 15 :QGYGFNLHSDKS 1qavA 90 :GGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV Number of specific fragments extracted= 4 number of extra gaps= 0 total=3076 Number of alignments=824 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 4 :RPRLCHLRKGP 1qavA 78 :QRRRVTVRKAD T0340 15 :QGYGFNLHSDKS 1qavA 90 :GGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK Number of specific fragments extracted= 4 number of extra gaps= 0 total=3080 Number of alignments=825 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 1 :SMLRPRLCHLRKGP 1qavA 75 :GSLQRRRVTVRKAD T0340 15 :QGYGFNLHSDKS 1qavA 90 :GGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 4 number of extra gaps= 0 total=3084 Number of alignments=826 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 1 :SMLRPRLCHLRKGPQ 1qavA 75 :GSLQRRRVTVRKADA T0340 16 :GYGFNLHSDKS 1qavA 91 :GLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 4 number of extra gaps= 0 total=3088 Number of alignments=827 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRK 1qavA 75 :GSLQRRRVTVRK T0340 13 :GPQGYGFNLHSDKS 1qavA 88 :DAGGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3092 Number of alignments=828 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLC 1qavA 75 :GSLQRRRV T0340 9 :HLRKGPQGYGFNLHSDKS 1qavA 84 :VRKADAGGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3096 Number of alignments=829 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRK 1qavA 75 :GSLQRRRVTVRK T0340 13 :GPQGYGFNLHSDKS 1qavA 88 :DAGGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3100 Number of alignments=830 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1qavA)K164 T0340 1 :SMLRPRLCHLRK 1qavA 75 :GSLQRRRVTVRK T0340 13 :GPQGYGFNLHSDKS 1qavA 88 :DAGGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM Number of specific fragments extracted= 4 number of extra gaps= 0 total=3104 Number of alignments=831 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1qavA 79 :RRRVTVRKADAGGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV Number of specific fragments extracted= 3 number of extra gaps= 0 total=3107 Number of alignments=832 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 6 :RLCHLRKGPQGYGFNLHSDKS 1qavA 81 :RVTVRKADAGGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV Number of specific fragments extracted= 3 number of extra gaps= 0 total=3110 Number of alignments=833 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 1 :SMLRPRLCHLRK 1qavA 75 :GSLQRRRVTVRK T0340 13 :GPQGYGFNLHSDKS 1qavA 88 :DAGGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 4 number of extra gaps= 0 total=3114 Number of alignments=834 # 1qavA read from 1qavA/merged-a2m # found chain 1qavA in template set T0340 3 :LRPRLCHLRK 1qavA 77 :LQRRRVTVRK T0340 13 :GPQGYGFNLHSDKS 1qavA 88 :DAGGLGISIKGGRE T0340 27 :RPGQYIRSVDPGSPAARSG 1qavA 103 :KMPILISKIFKGLAADQTE T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1qavA 123 :LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY Number of specific fragments extracted= 4 number of extra gaps= 0 total=3118 Number of alignments=835 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qavB/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1qavB expands to /projects/compbio/data/pdb/1qav.pdb.gz 1qavB:# T0340 read from 1qavB/merged-a2m # 1qavB read from 1qavB/merged-a2m # adding 1qavB to template set # found chain 1qavB in template set T0340 4 :RPRLCHLRKG 1qavB 1014 :NVISVRLFKR T0340 14 :PQGYGFNLHSDKSRPGQYIRSVDPGSPAARS 1qavB 1025 :VGGLGFLVKERVSKPPVIISDLIRGGAAEQS T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1qavB 1057 :LIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0340 77 :DEARLLVVGPS 1qavB 1091 :THVVLILRGPE T0340 88 :TRL 1qavB 1123 :TQP Number of specific fragments extracted= 5 number of extra gaps= 0 total=3123 Number of alignments=836 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 5 :PRLCHLRKG 1qavB 1015 :VISVRLFKR T0340 14 :PQGYGFNLHSDKSRPGQYIRSVDPGSPAARS 1qavB 1025 :VGGLGFLVKERVSKPPVIISDLIRGGAAEQS T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 1qavB 1057 :LIQAGDIILAVNDRPLVDLSYDSALEVLRGIA T0340 77 :DEARLLVVGP 1qavB 1091 :THVVLILRGP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3127 Number of alignments=837 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 1 :S 1qavB 1012 :Q T0340 3 :LRPRLCHLRKGPQ 1qavB 1013 :PNVISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1027 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPSTRL 1qavB 1089 :SETHVVLILRGPEGF Number of specific fragments extracted= 5 number of extra gaps= 0 total=3132 Number of alignments=838 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 1 :S 1qavB 1012 :Q T0340 3 :LRPRLCHLRKGPQ 1qavB 1013 :PNVISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1027 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPSTRL 1qavB 1089 :SETHVVLILRGPEGF Number of specific fragments extracted= 5 number of extra gaps= 0 total=3137 Number of alignments=839 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 3 :LRPRLCHLRKGPQ 1qavB 1013 :PNVISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1027 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPSTRL 1qavB 1089 :SETHVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=3141 Number of alignments=840 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 4 :RPRLCHLRKGPQ 1qavB 1014 :NVISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1027 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qavB 1089 :SETHVVLILRGP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3145 Number of alignments=841 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGL 1qavB 1027 :GLGFLVKERVSKPPVIISDLIRGGAAEQSGL T0340 47 :RAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1qavB 1059 :QAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI Number of specific fragments extracted= 2 number of extra gaps= 0 total=3147 Number of alignments=842 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 12 :KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGL 1qavB 1023 :RKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGL T0340 47 :RAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1qavB 1059 :QAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV Number of specific fragments extracted= 2 number of extra gaps= 0 total=3149 Number of alignments=843 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1qavB)Q1012 T0340 3 :LRPRLCHLRKGP 1qavB 1013 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1026 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qavB 1090 :ETHVVLILRGPE T0340 88 :TRL 1qavB 1124 :QPL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3154 Number of alignments=844 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1qavB)Q1012 T0340 3 :LRPRLCHLRKGP 1qavB 1013 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1026 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qavB 1090 :ETHVVLILRGPE T0340 88 :TRL 1qavB 1124 :QPL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3159 Number of alignments=845 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1qavB)Q1012 T0340 3 :LRPRLCHLRKGP 1qavB 1013 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1026 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qavB 1090 :ETHVVLILRGPE T0340 88 :TRL 1qavB 1124 :QPL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3164 Number of alignments=846 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1qavB)Q1012 T0340 3 :LRPRLCHLRKGPQ 1qavB 1013 :PNVISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1027 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qavB 1090 :ETHVVLILRGPE T0340 88 :TRL 1qavB 1124 :QPL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3169 Number of alignments=847 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 3 :LRPRLCHLRKGP 1qavB 1013 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1026 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qavB 1090 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3173 Number of alignments=848 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 3 :LRPRLCHLRKGP 1qavB 1013 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1026 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1qavB 1090 :ETHVVLILRGP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3177 Number of alignments=849 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1qavB)Q1012 T0340 3 :LRPRLCHLRKGP 1qavB 1013 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1026 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qavB 1090 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3181 Number of alignments=850 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1qavB)Q1012 T0340 3 :LRPRLCHLRKGPQ 1qavB 1013 :PNVISVRLFKRKV T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1027 :GLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qavB 1090 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3185 Number of alignments=851 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1qavB)Q1012 T0340 3 :LRPRLCHLRKGP 1qavB 1013 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1026 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1qavB 1090 :ETHVVLILRGP T0340 87 :STRL 1qavB 1123 :TQPL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3190 Number of alignments=852 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1qavB)Q1012 T0340 3 :LRPRLCHLRKGP 1qavB 1013 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1026 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1qavB 1090 :ETHVVLILRGP T0340 87 :STRL 1qavB 1123 :TQPL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3195 Number of alignments=853 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1qavB)Q1012 T0340 3 :LRPRLCHLRKGP 1qavB 1013 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1026 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1qavB 1090 :ETHVVLILRGP T0340 87 :STRL 1qavB 1123 :TQPL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3200 Number of alignments=854 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1qavB)Q1012 T0340 3 :LRPRLCHLRKGP 1qavB 1013 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1026 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1qavB 1090 :ETHVVLILRGP T0340 88 :TRL 1qavB 1124 :QPL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3205 Number of alignments=855 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 3 :LRPRLCHLRKGP 1qavB 1013 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1026 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1qavB 1090 :ETHVVLILRGP Number of specific fragments extracted= 4 number of extra gaps= 0 total=3209 Number of alignments=856 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 3 :LRPRLCHLRKGP 1qavB 1013 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1026 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPS 1qavB 1090 :ETHVVLILRGPE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3213 Number of alignments=857 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1qavB)Q1012 T0340 3 :LRPRLCHLRKGP 1qavB 1013 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1026 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGP 1qavB 1090 :ETHVVLILRGP T0340 88 :TR 1qavB 1102 :GF Number of specific fragments extracted= 5 number of extra gaps= 0 total=3218 Number of alignments=858 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1qavB)Q1012 T0340 3 :LRPRLCHLRKGP 1qavB 1013 :PNVISVRLFKRK T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1026 :GGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGI T0340 76 :EDEARLLVVGPSTR 1qavB 1090 :ETHVVLILRGPEGF Number of specific fragments extracted= 4 number of extra gaps= 0 total=3222 Number of alignments=859 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3224 Number of alignments=860 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1012 :QPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3226 Number of alignments=861 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1qavB)Q1012 T0340 3 :LRPRLCHL 1qavB 1013 :PNVISVRL T0340 11 :RKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1022 :KRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARED 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIAS T0340 78 :EARLLVVGPST 1qavB 1092 :HVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3230 Number of alignments=862 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1qavB)Q1012 T0340 3 :LRPRLCHLR 1qavB 1013 :PNVISVRLF T0340 12 :KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1023 :RKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDE 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASE T0340 79 :ARLLVVGPST 1qavB 1093 :VVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3234 Number of alignments=863 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 9 :HLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1020 :LFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI Number of specific fragments extracted= 2 number of extra gaps= 0 total=3236 Number of alignments=864 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 8 :CHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1019 :RLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR Number of specific fragments extracted= 2 number of extra gaps= 0 total=3238 Number of alignments=865 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 3 :LRPRLCHL 1qavB 1013 :PNVISVRL T0340 11 :RKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1022 :KRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI Number of specific fragments extracted= 3 number of extra gaps= 0 total=3241 Number of alignments=866 # 1qavB read from 1qavB/merged-a2m # found chain 1qavB in template set T0340 3 :LRPRLCHLR 1qavB 1013 :PNVISVRLF T0340 12 :KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1qavB 1023 :RKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARED 1qavB 1058 :IQAGDIILAVNDRPLVDLSYDSALEVLRGIAS T0340 78 :EARLLVVGPST 1qavB 1092 :HVVLILRGPEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3245 Number of alignments=867 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1m5zA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1m5zA expands to /projects/compbio/data/pdb/1m5z.pdb.gz 1m5zA:# T0340 read from 1m5zA/merged-a2m # 1m5zA read from 1m5zA/merged-a2m # adding 1m5zA to template set # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLRPRLCHLRKGPQ 1m5zA 18 :TPVELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3247 Number of alignments=868 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLRPRLCHLRKGPQ 1m5zA 18 :TPVELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3249 Number of alignments=869 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0340 3 :LRPRLCHLRKGPQ 1m5zA 20 :VELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3251 Number of alignments=870 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0340 3 :LRPRLCHLRKGPQ 1m5zA 20 :VELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3253 Number of alignments=871 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0340 13 :GPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 1m5zA 32 :GMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI Number of specific fragments extracted= 1 number of extra gaps= 0 total=3254 Number of alignments=872 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0340 12 :KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1m5zA 31 :SGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV Number of specific fragments extracted= 1 number of extra gaps= 0 total=3255 Number of alignments=873 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLRPRLCHLRKGPQ 1m5zA 18 :TPVELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3257 Number of alignments=874 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLRPRLCHLRKGPQ 1m5zA 18 :TPVELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3259 Number of alignments=875 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLR 1m5zA 16 :SPTP T0340 5 :PRLCHLRKGPQ 1m5zA 22 :LHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=3262 Number of alignments=876 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLR 1m5zA 16 :SPTP T0340 5 :PRLCHLRKGPQ 1m5zA 22 :LHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=3265 Number of alignments=877 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 2 :MLRPRLCHLRKGPQ 1m5zA 19 :PVELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3267 Number of alignments=878 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0340 2 :MLRPRLCHLRKGPQ 1m5zA 19 :PVELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3269 Number of alignments=879 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLRPRLCHLRKGPQ 1m5zA 18 :TPVELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3271 Number of alignments=880 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLRPRLCHLRKGPQ 1m5zA 18 :TPVELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3273 Number of alignments=881 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLRPRLCHLRKGPQ 1m5zA 18 :TPVELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3275 Number of alignments=882 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLRPRLCHLRKGPQ 1m5zA 18 :TPVELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3277 Number of alignments=883 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLR 1m5zA 16 :SPTP T0340 5 :PRLCHLRKGPQ 1m5zA 22 :LHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=3280 Number of alignments=884 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLRPRL 1m5zA 16 :SPTPVEL T0340 8 :CHLRKGPQ 1m5zA 25 :VTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=3283 Number of alignments=885 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0340 1 :SMLRPRLCHLRKGPQ 1m5zA 18 :TPVELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3285 Number of alignments=886 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0340 2 :MLRPRLCHLRKGPQ 1m5zA 19 :PVELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3287 Number of alignments=887 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLRPRLCHLRKGPQ 1m5zA 18 :TPVELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3289 Number of alignments=888 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0340 1 :SMLRPRLCHLRKGPQ 1m5zA 18 :TPVELHKVTLYKDSG T0340 16 :GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 35 :DFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3291 Number of alignments=889 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLRPRL 1m5zA 16 :SPTPVEL T0340 8 :CHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 27 :LYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3293 Number of alignments=890 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLRPRL 1m5zA 16 :SPTPVEL T0340 8 :CHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 27 :LYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3295 Number of alignments=891 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SMLRPRLCHLR 1m5zA 16 :SPTPVELHKVT T0340 12 :KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 31 :SGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3297 Number of alignments=892 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 1 :SM 1m5zA 16 :SP T0340 3 :LRPRLCHLRKGP 1m5zA 20 :VELHKVTLYKDS T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 34 :EDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 3 number of extra gaps= 0 total=3300 Number of alignments=893 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0340 7 :LCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1m5zA 26 :TLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=3301 Number of alignments=894 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0340 8 :CHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 27 :LYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 1 number of extra gaps= 0 total=3302 Number of alignments=895 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1m5zA)P106 T0340 2 :MLRPRLCHLRKGP 1m5zA 19 :PVELHKVTLYKDS T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 34 :EDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3304 Number of alignments=896 # 1m5zA read from 1m5zA/merged-a2m # found chain 1m5zA in template set T0340 2 :MLRPRLCHLRKGP 1m5zA 19 :PVELHKVTLYKDS T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1m5zA 34 :EDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3306 Number of alignments=897 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1be9A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1be9A expands to /projects/compbio/data/pdb/1be9.pdb.gz 1be9A:# T0340 read from 1be9A/merged-a2m # 1be9A read from 1be9A/merged-a2m # adding 1be9A to template set # found chain 1be9A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3308 Number of alignments=898 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3310 Number of alignments=899 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3312 Number of alignments=900 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3314 Number of alignments=901 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3316 Number of alignments=902 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3318 Number of alignments=903 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3320 Number of alignments=904 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3322 Number of alignments=905 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARS 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLS T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1be9A 352 :ELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=3324 Number of alignments=906 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARS 1be9A 310 :EPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLS T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1be9A 352 :ELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=3326 Number of alignments=907 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 311 :PRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIK 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3328 Number of alignments=908 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 310 :EPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3330 Number of alignments=909 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP T0340 88 :TRL 1be9A 413 :VTN Number of specific fragments extracted= 3 number of extra gaps= 0 total=3333 Number of alignments=910 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP T0340 88 :TRL 1be9A 413 :VTN Number of specific fragments extracted= 3 number of extra gaps= 0 total=3336 Number of alignments=911 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP T0340 88 :TRL 1be9A 413 :VTN Number of specific fragments extracted= 3 number of extra gaps= 0 total=3339 Number of alignments=912 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 1 :S 1be9A 301 :F T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0340 89 :RL 1be9A 414 :TN Number of specific fragments extracted= 4 number of extra gaps= 0 total=3343 Number of alignments=913 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=3345 Number of alignments=914 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP Number of specific fragments extracted= 2 number of extra gaps= 0 total=3347 Number of alignments=915 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3349 Number of alignments=916 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3351 Number of alignments=917 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0340 88 :TRL 1be9A 413 :VTN Number of specific fragments extracted= 3 number of extra gaps= 0 total=3354 Number of alignments=918 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 307 :IPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0340 88 :TRL 1be9A 413 :VTN Number of specific fragments extracted= 3 number of extra gaps= 0 total=3357 Number of alignments=919 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0340 88 :TRL 1be9A 413 :VTN Number of specific fragments extracted= 3 number of extra gaps= 0 total=3360 Number of alignments=920 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1be9A)F301 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK T0340 88 :TRL 1be9A 413 :VTN Number of specific fragments extracted= 3 number of extra gaps= 0 total=3363 Number of alignments=921 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3365 Number of alignments=922 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3367 Number of alignments=923 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3369 Number of alignments=924 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3371 Number of alignments=925 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3373 Number of alignments=926 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3375 Number of alignments=927 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3377 Number of alignments=928 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3379 Number of alignments=929 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=3381 Number of alignments=930 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 309 :REPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK Number of specific fragments extracted= 2 number of extra gaps= 0 total=3383 Number of alignments=931 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3385 Number of alignments=932 # 1be9A read from 1be9A/merged-a2m # found chain 1be9A in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1be9A 308 :PREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1be9A 353 :LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3387 Number of alignments=933 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1te0A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1te0A expands to /projects/compbio/data/pdb/1te0.pdb.gz 1te0A:# T0340 read from 1te0A/merged-a2m # 1te0A read from 1te0A/merged-a2m # adding 1te0A to template set # found chain 1te0A in template set Warning: unaligning (T0340)P5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0340)R6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)H71 Warning: unaligning (T0340)L7 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)N72 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q73 Warning: unaligning (T0340)H9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L74 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 1 :SMLR 1te0A 66 :LNTN T0340 10 :LRK 1te0A 75 :EIR T0340 14 :PQGYGFNLH 1te0A 78 :TLGSGVIMD T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GLRHAEVVASIKAREDEARLLVVGPSTRL 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQL Number of specific fragments extracted= 9 number of extra gaps= 8 total=3396 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)P5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0340)R6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)H71 Warning: unaligning (T0340)L7 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)N72 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q73 Warning: unaligning (T0340)H9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L74 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 2 :MLR 1te0A 67 :NTN T0340 10 :LRK 1te0A 75 :EIR T0340 14 :PQGYGFNLH 1te0A 78 :TLGSGVIMD T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GLRHAEVVASIKAREDEARLLVVGPSTRL 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQL Number of specific fragments extracted= 9 number of extra gaps= 8 total=3405 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0340)Y17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0340)N20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0340)H22 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 2 :MLRPRLCHLRKGPQ 1te0A 254 :VIRGYIGIGGREIA T0340 18 :GF 1te0A 270 :HA T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GLRHAEVVASIKAREDEARLLVVGPSTRL 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQL Number of specific fragments extracted= 8 number of extra gaps= 7 total=3413 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)N20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0340)H22 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 19 :F 1te0A 271 :A T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GLRHAEVVASIKAREDEARLLVVGP 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRD Number of specific fragments extracted= 7 number of extra gaps= 6 total=3420 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0340)Y17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0340)N20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0340)H22 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 1 :SMLRPRLCHLRKGPQ 1te0A 253 :RVIRGYIGIGGREIA T0340 18 :GF 1te0A 270 :HA T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GLRHAEVVASIKAREDEARLLVVGPSTRL 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQL Number of specific fragments extracted= 8 number of extra gaps= 7 total=3428 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)R6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G137 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G231 Warning: unaligning (T0340)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G231 Warning: unaligning (T0340)Y17 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)I232 Warning: unaligning (T0340)H22 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)F238 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)F238 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 7 :LCHLRKGP 1te0A 138 :LPTIPINA T0340 18 :GFNL 1te0A 233 :GFAI T0340 24 :D 1te0A 239 :Q T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GLRHAEVVASIKAREDEARLLVVGPSTRL 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQL Number of specific fragments extracted= 9 number of extra gaps= 9 total=3437 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0340)Y17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0340)N20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0340)H22 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 4 :RPRLCHLRKGPQ 1te0A 256 :RGYIGIGGREIA T0340 18 :GF 1te0A 270 :HA T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GLRHAEVVASIKAREDEARLLVVGPSTRL 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQL Number of specific fragments extracted= 8 number of extra gaps= 7 total=3445 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L269 Warning: unaligning (T0340)Y17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L269 Warning: unaligning (T0340)N20 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0340)H22 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 6 :RLCHLRKGPQ 1te0A 258 :YIGIGGREIA T0340 18 :GF 1te0A 270 :HA T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GLRHAEVVASIKAREDEARLLVVGP 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRD Number of specific fragments extracted= 8 number of extra gaps= 7 total=3453 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)S1 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0340)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0340)R6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0340)L7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)H71 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)N72 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q73 Warning: unaligning (T0340)L10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L74 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 3 :LRP 1te0A 67 :NTN T0340 11 :RKGPQGYGFNLH 1te0A 75 :EIRTLGSGVIMD T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GLRHAEVVASIKAREDEARLLVVGPSTRL 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQL Number of specific fragments extracted= 8 number of extra gaps= 9 total=3461 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)S1 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0340)M2 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0340)R6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0340)L7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)H71 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)N72 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)Q73 Warning: unaligning (T0340)L10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L74 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G231 Warning: unaligning (T0340)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G231 Warning: unaligning (T0340)Y17 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)I232 Warning: unaligning (T0340)H22 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)F238 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)F238 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 3 :LRP 1te0A 67 :NTN T0340 11 :RKGP 1te0A 75 :EIRT T0340 18 :GFNL 1te0A 233 :GFAI T0340 24 :D 1te0A 239 :Q T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GLRHAEVVASIKAREDEARLLVVGPSTRL 1te0A 314 :SALETMDQVAEIRPGSVIPVVVMRDDKQL Number of specific fragments extracted= 10 number of extra gaps= 10 total=3471 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 29 :GQYI 1te0A 281 :GIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GLRHAEVVASIKAREDEARLLVV 1te0A 314 :SALETMDQVAEIRPGSVIPVVVM Number of specific fragments extracted= 6 number of extra gaps= 5 total=3477 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0340)H22 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 19 :FN 1te0A 234 :FA T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GLRHAEVVASIKAREDEARLLVV 1te0A 314 :SALETMDQVAEIRPGSVIPVVVM Number of specific fragments extracted= 7 number of extra gaps= 6 total=3484 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 T0340 29 :GQYI 1te0A 281 :GIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQ 1te0A 304 :IISVDNK Number of specific fragments extracted= 5 number of extra gaps= 4 total=3489 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 28 :PGQYI 1te0A 280 :QGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 61 :EGLRHAEVVASIK 1te0A 314 :SALETMDQVAEIR Number of specific fragments extracted= 6 number of extra gaps= 5 total=3495 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)G18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0340)F19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0340)D24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)H71 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)N72 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0340)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0340)R89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0340)L90 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0340 1 :SMLRPRLCHLRKGPQ 1te0A 42 :ETPASYNLAVRRAAP T0340 16 :GY 1te0A 63 :NR T0340 20 :NLH 1te0A 67 :NTN T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :G 1te0A 314 :S T0340 65 :HAEVVASIKAR 1te0A 315 :ALETMDQVAEI T0340 76 :EDEARLLVVGPS 1te0A 328 :GSVIPVVVMRDD Number of specific fragments extracted= 11 number of extra gaps= 8 total=3506 Number of alignments=934 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)L7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0340)C8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0340)G18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0340)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0340)R89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0340)L90 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0340 4 :RPR 1te0A 55 :APA T0340 9 :HLRK 1te0A 60 :NVYN T0340 17 :Y 1te0A 64 :R T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GL 1te0A 314 :SA T0340 66 :AEVVASIKAR 1te0A 316 :LETMDQVAEI T0340 76 :EDEARLLVVGPS 1te0A 328 :GSVIPVVVMRDD Number of specific fragments extracted= 11 number of extra gaps= 8 total=3517 Number of alignments=935 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)Y17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0340)D24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0340)S26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0340)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0340)R89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0340)L90 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0340 1 :SMLR 1te0A 37 :FDST T0340 18 :GFNLH 1te0A 60 :NVYNR T0340 25 :K 1te0A 67 :N T0340 27 :RP 1te0A 278 :QL T0340 29 :GQYI 1te0A 281 :GIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 64 :RHAEVVASIKAR 1te0A 314 :SALETMDQVAEI T0340 76 :EDEARLLVVGPS 1te0A 328 :GSVIPVVVMRDD Number of specific fragments extracted= 11 number of extra gaps= 9 total=3528 Number of alignments=936 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)C8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)H71 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0340)S26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0340)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0340)R89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0340)L90 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0340 1 :SMLR 1te0A 37 :FDST T0340 9 :HLRK 1te0A 60 :NVYN T0340 13 :G 1te0A 69 :N T0340 17 :YGFNLHSD 1te0A 79 :LGSGVIMD T0340 27 :RP 1te0A 278 :QL T0340 29 :GQYI 1te0A 281 :GIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 64 :RHAEVVASIKAR 1te0A 314 :SALETMDQVAEI T0340 76 :EDEARLLVVGPS 1te0A 328 :GSVIPVVVMRDD Number of specific fragments extracted= 12 number of extra gaps= 10 total=3540 Number of alignments=937 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)S26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 27 :RP 1te0A 278 :QL T0340 29 :GQYI 1te0A 281 :GIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GL 1te0A 314 :SA Number of specific fragments extracted= 7 number of extra gaps= 6 total=3547 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)S26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 27 :RP 1te0A 278 :QL T0340 29 :GQYI 1te0A 281 :GIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GL 1te0A 314 :SA T0340 66 :AEVVASIKAR 1te0A 316 :LETMDQVAEI T0340 76 :EDEARLLVVGPS 1te0A 328 :GSVIPVVVMRDD Number of specific fragments extracted= 9 number of extra gaps= 6 total=3556 Number of alignments=938 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)S26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 27 :RP 1te0A 278 :QL T0340 29 :GQYI 1te0A 281 :GIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 64 :RHAEVVASIKAR 1te0A 314 :SALETMDQVAEI T0340 76 :EDEARLLVVGPST 1te0A 328 :GSVIPVVVMRDDK Number of specific fragments extracted= 8 number of extra gaps= 6 total=3564 Number of alignments=939 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0340)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)S26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 27 :RP 1te0A 278 :QL T0340 29 :GQYI 1te0A 281 :GIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 64 :RHAEVVASIKAR 1te0A 314 :SALETMDQVAEI T0340 76 :EDEARLLVVGPS 1te0A 328 :GSVIPVVVMRDD Number of specific fragments extracted= 8 number of extra gaps= 6 total=3572 Number of alignments=940 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)L7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0340)C8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0340)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0340)R89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0340)L90 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0340 1 :SMLRPR 1te0A 52 :RRAAPA T0340 9 :HLRKG 1te0A 60 :NVYNR T0340 15 :QGYGFNLHSD 1te0A 77 :RTLGSGVIMD T0340 27 :RPG 1te0A 89 :GYI T0340 30 :QYI 1te0A 282 :IVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 64 :RHAEVVASIKAR 1te0A 314 :SALETMDQVAEI T0340 76 :EDEARLLVVGP 1te0A 328 :GSVIPVVVMRD T0340 87 :S 1te0A 351 :Y Number of specific fragments extracted= 12 number of extra gaps= 9 total=3584 Number of alignments=941 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)L7 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0340)C8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0340)G18 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0340)F19 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0340)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0340)R89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0340)L90 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0340 3 :LRPR 1te0A 54 :AAPA T0340 9 :HLRK 1te0A 60 :NVYN T0340 17 :Y 1te0A 64 :R T0340 20 :NL 1te0A 67 :NT T0340 30 :QYI 1te0A 282 :IVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :G 1te0A 314 :S T0340 65 :HAEVVASIKAR 1te0A 315 :ALETMDQVAEI T0340 76 :EDEARLLVVGP 1te0A 328 :GSVIPVVVMRD T0340 87 :S 1te0A 351 :Y Number of specific fragments extracted= 13 number of extra gaps= 8 total=3597 Number of alignments=942 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)R6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0340)K12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0340)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0340)R89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0340)L90 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0340 1 :SMLR 1te0A 37 :FDST T0340 7 :LCHLR 1te0A 60 :NVYNR T0340 13 :G 1te0A 69 :N T0340 17 :YGFNLHSD 1te0A 79 :LGSGVIMD T0340 30 :QYI 1te0A 282 :IVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 64 :RHAEVVASIKAR 1te0A 314 :SALETMDQVAEI T0340 76 :EDEARLLVVGP 1te0A 328 :GSVIPVVVMRD Number of specific fragments extracted= 11 number of extra gaps= 10 total=3608 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)P5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0340)R6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0340)K12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)H71 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0340)T88 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)A353 Warning: unaligning (T0340)R89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0340)L90 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0340 1 :SMLR 1te0A 37 :FDST T0340 7 :LCHLR 1te0A 60 :NVYNR T0340 13 :G 1te0A 69 :N T0340 17 :YGFNLHSD 1te0A 79 :LGSGVIMD T0340 30 :QYI 1te0A 282 :IVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 64 :RHAEVVASIKAR 1te0A 314 :SALETMDQVAEI T0340 76 :EDEARLLVVGP 1te0A 328 :GSVIPVVVMRD Number of specific fragments extracted= 11 number of extra gaps= 10 total=3619 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)S26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 27 :RPGQYI 1te0A 279 :LQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 64 :RHAEVVASIKAR 1te0A 314 :SALETMDQVAEI T0340 76 :EDEARLLVVGP 1te0A 328 :GSVIPVVVMRD Number of specific fragments extracted= 7 number of extra gaps= 6 total=3626 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)S26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 27 :RPGQYI 1te0A 279 :LQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :G 1te0A 314 :S T0340 65 :HAEVVASIKAR 1te0A 315 :ALETMDQVAEI T0340 76 :EDEARLLVVGP 1te0A 328 :GSVIPVVVMRD Number of specific fragments extracted= 8 number of extra gaps= 6 total=3634 Number of alignments=943 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)S26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 27 :RPGQYI 1te0A 279 :LQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 64 :RHAEVVASIKAR 1te0A 314 :SALETMDQVAEI T0340 76 :EDEARLLVVGPSTR 1te0A 328 :GSVIPVVVMRDDKQ Number of specific fragments extracted= 7 number of extra gaps= 6 total=3641 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G273 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)S26 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 27 :RPGQYI 1te0A 279 :LQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 64 :RHAEVVASIKAR 1te0A 314 :SALETMDQVAEI T0340 76 :EDEARLLVVGPST 1te0A 328 :GSVIPVVVMRDDK Number of specific fragments extracted= 7 number of extra gaps= 6 total=3648 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 1 :SMLR 1te0A 37 :FDST T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1te0A 102 :DQIIVALQDGRVFEALLVGSDS T0340 27 :RPGQYI 1te0A 279 :LQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GL 1te0A 314 :SA T0340 65 :HAEVVASIKAREDEARLLVVGPSTRL 1te0A 316 :LETMDQVAEIRPGSVIPVVVMRDDKQ Number of specific fragments extracted= 9 number of extra gaps= 5 total=3657 Number of alignments=944 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 1 :S 1te0A 37 :F T0340 17 :YGFNLHSD 1te0A 79 :LGSGVIMD T0340 27 :RPGQYI 1te0A 279 :LQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GL 1te0A 314 :SA T0340 64 :RHAEVVAS 1te0A 318 :TMDQVAEI T0340 75 :REDEARLLVVGPSTRL 1te0A 326 :RPGSVIPVVVMRDDKQ Number of specific fragments extracted= 10 number of extra gaps= 6 total=3667 Number of alignments=945 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)L10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0340)R11 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L66 Warning: unaligning (T0340)Q15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)H71 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 1 :SML 1te0A 37 :FDS T0340 7 :LCH 1te0A 62 :YNR T0340 12 :KGP 1te0A 67 :NTN T0340 16 :GYGFNLHSD 1te0A 78 :TLGSGVIMD T0340 27 :RPGQYI 1te0A 279 :LQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 64 :RHAEVVASIKA 1te0A 314 :SALETMDQVAE T0340 75 :REDEARLLVVGPSTRL 1te0A 326 :RPGSVIPVVVMRDDKQ Number of specific fragments extracted= 11 number of extra gaps= 8 total=3678 Number of alignments=946 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)P5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)V59 Warning: unaligning (T0340)R6 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)V59 Warning: unaligning (T0340)K12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L66 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)R88 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)R88 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 Warning: unaligning (T0340)R89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)A353 Warning: unaligning (T0340)L90 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1te0A)T354 T0340 1 :S 1te0A 37 :F T0340 7 :LCHLR 1te0A 60 :NVYNR T0340 16 :GYGFNLHSD 1te0A 78 :TLGSGVIMD T0340 27 :RPGQYI 1te0A 279 :LQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 64 :RHAEVVASIKA 1te0A 314 :SALETMDQVAE T0340 75 :REDEARLLVVGPST 1te0A 327 :PGSVIPVVVMRDDK Number of specific fragments extracted= 10 number of extra gaps= 9 total=3688 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)H22 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP Number of specific fragments extracted= 5 number of extra gaps= 5 total=3693 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0340)H22 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 62 :GL 1te0A 314 :SA T0340 64 :RHAEVVAS 1te0A 318 :TMDQVAEI T0340 75 :REDEARLLVVGP 1te0A 326 :RPGSVIPVVVMR Number of specific fragments extracted= 8 number of extra gaps= 6 total=3701 Number of alignments=947 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G273 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G275 Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 64 :RHAEVVASIKA 1te0A 314 :SALETMDQVAE T0340 75 :REDEARLLVVGPSTR 1te0A 326 :RPGSVIPVVVMRDDK Number of specific fragments extracted= 7 number of extra gaps= 6 total=3708 # 1te0A read from 1te0A/merged-a2m # found chain 1te0A in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G275 Warning: unaligning (T0340)D24 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)D277 Warning: unaligning (T0340)K25 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)D277 Warning: unaligning (T0340)R33 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)E286 Warning: unaligning (T0340)S34 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)E286 Warning: unaligning (T0340)G38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)G291 Warning: unaligning (T0340)S39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)G291 Warning: unaligning (T0340)A42 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1te0A)N295 Warning: unaligning (T0340)R43 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1te0A)N295 Warning: unaligning (T0340)S44 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)G297 Warning: unaligning (T0340)G45 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)G297 Warning: unaligning (T0340)D50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1te0A)L303 Warning: unaligning (T0340)R51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1te0A)L303 Warning: unaligning (T0340)V60 because of BadResidue code BAD_PEPTIDE in next template residue (1te0A)I313 Warning: unaligning (T0340)E61 because of BadResidue code BAD_PEPTIDE at template residue (1te0A)I313 T0340 26 :SRPGQYI 1te0A 278 :QLQGIVV T0340 35 :VDP 1te0A 287 :VSP T0340 40 :PA 1te0A 292 :PA T0340 46 :LRAQ 1te0A 298 :IQVN T0340 52 :LIEVNGQN 1te0A 304 :IISVDNKP T0340 64 :RHAEVVASIKA 1te0A 314 :SALETMDQVAE T0340 75 :REDEARLLVVGPST 1te0A 327 :PGSVIPVVVMRDDK Number of specific fragments extracted= 7 number of extra gaps= 6 total=3715 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gq5A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gq5A expands to /projects/compbio/data/pdb/1gq5.pdb.gz 1gq5A:# T0340 read from 1gq5A/merged-a2m # 1gq5A read from 1gq5A/merged-a2m # adding 1gq5A to template set # found chain 1gq5A in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1gq5A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=3716 Number of alignments=948 # 1gq5A read from 1gq5A/merged-a2m # found chain 1gq5A in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1gq5A 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=3717 Number of alignments=949 # 1gq5A read from 1gq5A/merged-a2m # found chain 1gq5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1gq5A)G9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1gq5A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE T0340 88 :TRL 1gq5A 97 :SFL Number of specific fragments extracted= 2 number of extra gaps= 0 total=3719 Number of alignments=950 # 1gq5A read from 1gq5A/merged-a2m # found chain 1gq5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1gq5A)G9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1gq5A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE T0340 88 :TRL 1gq5A 97 :SFL Number of specific fragments extracted= 2 number of extra gaps= 0 total=3721 Number of alignments=951 # 1gq5A read from 1gq5A/merged-a2m # found chain 1gq5A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1gq5A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=3722 Number of alignments=952 # 1gq5A read from 1gq5A/merged-a2m # found chain 1gq5A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1gq5A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=3723 Number of alignments=953 # 1gq5A read from 1gq5A/merged-a2m # found chain 1gq5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1gq5A)G9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1gq5A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP T0340 87 :STRL 1gq5A 96 :DSFL Number of specific fragments extracted= 2 number of extra gaps= 0 total=3725 Number of alignments=954 # 1gq5A read from 1gq5A/merged-a2m # found chain 1gq5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1gq5A)G9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1gq5A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP T0340 87 :STRL 1gq5A 96 :DSFL Number of specific fragments extracted= 2 number of extra gaps= 0 total=3727 Number of alignments=955 # 1gq5A read from 1gq5A/merged-a2m # found chain 1gq5A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1gq5A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=3728 Number of alignments=956 # 1gq5A read from 1gq5A/merged-a2m # found chain 1gq5A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1gq5A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=3729 Number of alignments=957 # 1gq5A read from 1gq5A/merged-a2m # found chain 1gq5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1gq5A)G9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1gq5A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPEEDS Number of specific fragments extracted= 1 number of extra gaps= 0 total=3730 Number of alignments=958 # 1gq5A read from 1gq5A/merged-a2m # found chain 1gq5A in template set Warning: unaligning (T0340)M2 because first residue in template chain is (1gq5A)G9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 1gq5A 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPEED Number of specific fragments extracted= 1 number of extra gaps= 0 total=3731 Number of alignments=959 # 1gq5A read from 1gq5A/merged-a2m # found chain 1gq5A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1gq5A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=3732 Number of alignments=960 # 1gq5A read from 1gq5A/merged-a2m # found chain 1gq5A in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1gq5A 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=3733 Number of alignments=961 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fcfA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 2fcfA/merged-a2m # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=3737 Number of alignments=962 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=3741 Number of alignments=963 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0340 3 :LRPRLCHLRKG 2fcfA 1147 :MQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS Number of specific fragments extracted= 4 number of extra gaps= 0 total=3745 Number of alignments=964 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0340 3 :LRPRLCHLRKG 2fcfA 1147 :MQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI Number of specific fragments extracted= 4 number of extra gaps= 0 total=3749 Number of alignments=965 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTR Number of specific fragments extracted= 4 number of extra gaps= 0 total=3753 Number of alignments=966 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIST Number of specific fragments extracted= 4 number of extra gaps= 0 total=3757 Number of alignments=967 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0340 3 :LRPRLCHLRKG 2fcfA 1147 :MQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI Number of specific fragments extracted= 4 number of extra gaps= 0 total=3761 Number of alignments=968 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 T0340 4 :RPRLCHLRKG 2fcfA 1148 :QPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI Number of specific fragments extracted= 4 number of extra gaps= 0 total=3765 Number of alignments=969 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (2fcfA)Q1145 Warning: unaligning (T0340)Q15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 5 :P 2fcfA 1146 :S T0340 6 :RLCHLRKGP 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTR Number of specific fragments extracted= 4 number of extra gaps= 1 total=3769 Number of alignments=970 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)Q15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 1 :S 2fcfA 1145 :Q T0340 5 :P 2fcfA 1146 :S T0340 6 :RLCHLRKGP 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTR Number of specific fragments extracted= 5 number of extra gaps= 1 total=3774 Number of alignments=971 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)Q15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 13 :GP 2fcfA 1168 :GG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ Number of specific fragments extracted= 3 number of extra gaps= 1 total=3777 Number of alignments=972 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)Q15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 10 :LRKGP 2fcfA 1165 :SIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS Number of specific fragments extracted= 3 number of extra gaps= 1 total=3780 Number of alignments=973 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)Q15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 13 :GP 2fcfA 1168 :GG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV Number of specific fragments extracted= 3 number of extra gaps= 1 total=3783 Number of alignments=974 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)Q15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 13 :GP 2fcfA 1168 :GG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV Number of specific fragments extracted= 3 number of extra gaps= 1 total=3786 Number of alignments=975 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSII T0340 88 :TRL 2fcfA 1245 :TRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=3791 Number of alignments=976 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSII T0340 88 :TRL 2fcfA 1245 :TRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=3796 Number of alignments=977 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSII T0340 88 :TRL 2fcfA 1245 :TRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=3801 Number of alignments=978 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSII T0340 88 :TRL 2fcfA 1245 :TRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=3806 Number of alignments=979 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS Number of specific fragments extracted= 4 number of extra gaps= 1 total=3810 Number of alignments=980 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 T0340 3 :LRPRLCHLRKG 2fcfA 1147 :MQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS Number of specific fragments extracted= 4 number of extra gaps= 1 total=3814 Number of alignments=981 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSII T0340 88 :TR 2fcfA 1245 :TR Number of specific fragments extracted= 5 number of extra gaps= 1 total=3819 Number of alignments=982 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSII T0340 88 :TR 2fcfA 1245 :TR Number of specific fragments extracted= 5 number of extra gaps= 1 total=3824 Number of alignments=983 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI T0340 87 :STRL 2fcfA 1244 :STRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=3829 Number of alignments=984 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI T0340 87 :STRL 2fcfA 1244 :STRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=3834 Number of alignments=985 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI T0340 87 :STRL 2fcfA 1244 :STRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=3839 Number of alignments=986 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI T0340 87 :STRL 2fcfA 1244 :STRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=3844 Number of alignments=987 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 3 :LRPRLCHLRKG 2fcfA 1147 :MQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS Number of specific fragments extracted= 4 number of extra gaps= 1 total=3848 Number of alignments=988 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 3 :LRPRLCHLRKG 2fcfA 1147 :MQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ Number of specific fragments extracted= 4 number of extra gaps= 1 total=3852 Number of alignments=989 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI T0340 87 :STRL 2fcfA 1244 :STRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=3857 Number of alignments=990 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI T0340 87 :STRL 2fcfA 1244 :STRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=3862 Number of alignments=991 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS Number of specific fragments extracted= 4 number of extra gaps= 1 total=3866 Number of alignments=992 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS T0340 87 :STRL 2fcfA 1244 :STRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=3871 Number of alignments=993 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI T0340 87 :STRL 2fcfA 1244 :STRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=3876 Number of alignments=994 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI T0340 87 :STRL 2fcfA 1244 :STRL Number of specific fragments extracted= 5 number of extra gaps= 1 total=3881 Number of alignments=995 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)Q15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 11 :RKGP 2fcfA 1166 :IVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ Number of specific fragments extracted= 3 number of extra gaps= 1 total=3884 Number of alignments=996 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)Q15 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 9 :HLRKGP 2fcfA 1164 :ISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ Number of specific fragments extracted= 3 number of extra gaps= 1 total=3887 Number of alignments=997 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 1 :SMLRPRLCHLRKG 2fcfA 1145 :QSMQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI Number of specific fragments extracted= 4 number of extra gaps= 1 total=3891 Number of alignments=998 # 2fcfA read from 2fcfA/merged-a2m # found chain 2fcfA in template set Warning: unaligning (T0340)P14 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)K1160 Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)K1160 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2fcfA)G1184 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2fcfA)G1184 T0340 3 :LRPRLCHLRKG 2fcfA 1147 :MQPRRVELWRE T0340 16 :GYGFNLHSD 2fcfA 1161 :SLGISIVGG T0340 30 :QYIRSVDPGSPAARSG 2fcfA 1185 :IFIKHVLEDSPAGKNG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 2fcfA 1202 :LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI Number of specific fragments extracted= 4 number of extra gaps= 1 total=3895 Number of alignments=999 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rgrA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rgrA expands to /projects/compbio/data/pdb/1rgr.pdb.gz 1rgrA:# T0340 read from 1rgrA/merged-a2m # 1rgrA read from 1rgrA/merged-a2m # adding 1rgrA to template set # found chain 1rgrA in template set Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0340)H22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0340)R47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0340)L63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0340 10 :LRKGPQGYGFN 1rgrA 68 :LERGNSGLGFS T0340 24 :DKSR 1rgrA 82 :GTDN T0340 28 :PGQYIRSVDPGSPAARSG 1rgrA 92 :PSIFITKIIPGGAAAQDG T0340 48 :AQDRLIEVNGQNVEG 1rgrA 113 :VNDSILFVNEVDVRE T0340 65 :HAEVVASIKAREDEARLLVV 1rgrA 130 :HSAAVEALKEAGSIVRLYVM Number of specific fragments extracted= 5 number of extra gaps= 3 total=3900 Number of alignments=1000 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0340)H22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0340)R47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0340)L63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0340 9 :HLRKGPQGYGFN 1rgrA 67 :TLERGNSGLGFS T0340 24 :DKS 1rgrA 82 :GTD T0340 27 :RPGQYIRSVDPGSPAARSG 1rgrA 91 :DPSIFITKIIPGGAAAQDG T0340 48 :AQDRLIEVNGQNVEG 1rgrA 113 :VNDSILFVNEVDVRE T0340 65 :HAEVVASIKAREDEARLLVV 1rgrA 130 :HSAAVEALKEAGSIVRLYVM Number of specific fragments extracted= 5 number of extra gaps= 3 total=3905 Number of alignments=1001 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0340)H22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0340)R47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0340)L63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0340 5 :PRLCHLRKGPQGYGFN 1rgrA 63 :YEEITLERGNSGLGFS T0340 24 :DK 1rgrA 82 :GT T0340 26 :SRPGQYIRSVDPGSPAARSG 1rgrA 90 :DDPSIFITKIIPGGAAAQDG T0340 48 :AQDRLIEVNGQNVEG 1rgrA 113 :VNDSILFVNEVDVRE T0340 65 :HAEVVASIKAREDEARLLVVGPS 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRK Number of specific fragments extracted= 5 number of extra gaps= 3 total=3910 Number of alignments=1002 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0340)H22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0340)R47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0340)L63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0340 5 :PRLCHLRKGPQGYGFN 1rgrA 63 :YEEITLERGNSGLGFS T0340 24 :DK 1rgrA 82 :GT T0340 26 :SRPGQYIRSVDPGSPAARSG 1rgrA 90 :DDPSIFITKIIPGGAAAQDG T0340 48 :AQDRLIEVNGQNVEG 1rgrA 113 :VNDSILFVNEVDVRE T0340 65 :HAEVVASIKAREDEARLLVVGPS 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRK Number of specific fragments extracted= 5 number of extra gaps= 3 total=3915 Number of alignments=1003 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0340)H22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0340)R47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0340)L63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0340 5 :PRLCHLRKGPQGYGFN 1rgrA 63 :YEEITLERGNSGLGFS T0340 24 :DK 1rgrA 82 :GT T0340 26 :SRPGQYIRSVDPGSPAARSG 1rgrA 90 :DDPSIFITKIIPGGAAAQDG T0340 48 :AQDRLIEVNGQNVEG 1rgrA 113 :VNDSILFVNEVDVRE T0340 65 :HAEVVASIKAREDEARLLVVGPS 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRK Number of specific fragments extracted= 5 number of extra gaps= 3 total=3920 Number of alignments=1004 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0340)H22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0340)R47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0340)L63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0340 6 :RLCHLRKGPQGYGFN 1rgrA 64 :EEITLERGNSGLGFS T0340 24 :DK 1rgrA 82 :GT T0340 26 :SRPGQYIRSVDPGSPAARSG 1rgrA 90 :DDPSIFITKIIPGGAAAQDG T0340 48 :AQDRLIEVNGQNVEG 1rgrA 113 :VNDSILFVNEVDVRE T0340 65 :HAEVVASIKAREDEARLLVVGPS 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRK Number of specific fragments extracted= 5 number of extra gaps= 3 total=3925 Number of alignments=1005 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0340)H22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0340)R47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0340)L63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0340 5 :PRLCHLRKGPQGYGFN 1rgrA 63 :YEEITLERGNSGLGFS T0340 24 :DKS 1rgrA 82 :GTD T0340 27 :RPGQYIRSVDPGSPAARSG 1rgrA 91 :DPSIFITKIIPGGAAAQDG T0340 48 :AQDRLIEVNGQNVEG 1rgrA 113 :VNDSILFVNEVDVRE T0340 65 :HAEVVASIKAREDEARLLVVGP 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRR Number of specific fragments extracted= 5 number of extra gaps= 3 total=3930 Number of alignments=1006 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0340)H22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0340)R47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0340)L63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0340 5 :PRLCHLRKGPQGYGFN 1rgrA 63 :YEEITLERGNSGLGFS T0340 24 :DKS 1rgrA 82 :GTD T0340 27 :RPGQYIRSVDPGSPAARSG 1rgrA 91 :DPSIFITKIIPGGAAAQDG T0340 48 :AQDRLIEVNGQNVEG 1rgrA 113 :VNDSILFVNEVDVRE T0340 65 :HAEVVASIKAREDEARLLVVGP 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRR Number of specific fragments extracted= 5 number of extra gaps= 3 total=3935 Number of alignments=1007 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0340)H22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0340)R47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0340)L63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0340 5 :PRLCHLRKGPQGYGFN 1rgrA 63 :YEEITLERGNSGLGFS T0340 24 :DKS 1rgrA 82 :GTD T0340 27 :RPGQYIRSVDPGSPAARSG 1rgrA 91 :DPSIFITKIIPGGAAAQDG T0340 48 :AQDRLIEVNGQNVEG 1rgrA 113 :VNDSILFVNEVDVRE T0340 65 :HAEVVASIKAREDEARLLVVGP 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRR Number of specific fragments extracted= 5 number of extra gaps= 3 total=3940 Number of alignments=1008 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0340)H22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0340)R47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0340)L63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0340 5 :PRLCHLRKGPQGYGFN 1rgrA 63 :YEEITLERGNSGLGFS T0340 24 :DKS 1rgrA 82 :GTD T0340 27 :RPGQYIRSVDPGSPAARSG 1rgrA 91 :DPSIFITKIIPGGAAAQDG T0340 48 :AQDRLIEVNGQNVEG 1rgrA 113 :VNDSILFVNEVDVRE T0340 65 :HAEVVASIKAREDEARLLVVGP 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRR T0340 87 :S 1rgrA 153 :P Number of specific fragments extracted= 6 number of extra gaps= 3 total=3946 Number of alignments=1009 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0340)H22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0340)R47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0340)L63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 Warning: unaligning (T0340)R89 because last residue in template chain is (1rgrA)P154 T0340 5 :PRLCHLRKGPQGYGFN 1rgrA 63 :YEEITLERGNSGLGFS T0340 24 :DKS 1rgrA 82 :GTD T0340 27 :RPGQYIRSVDPGSPAARSG 1rgrA 91 :DPSIFITKIIPGGAAAQDG T0340 48 :AQDRLIEVNGQNVEG 1rgrA 113 :VNDSILFVNEVDVRE T0340 65 :HAEVVASIKAREDEARLLVVGPST 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 5 number of extra gaps= 3 total=3951 Number of alignments=1010 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0340)H22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0340)R47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0340)L63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 Warning: unaligning (T0340)R89 because last residue in template chain is (1rgrA)P154 T0340 5 :PRLCHLRKGPQGYGFN 1rgrA 63 :YEEITLERGNSGLGFS T0340 24 :DKS 1rgrA 82 :GTD T0340 27 :RPGQYIRSVDPGSPAARSG 1rgrA 91 :DPSIFITKIIPGGAAAQDG T0340 48 :AQDRLIEVNGQNVEG 1rgrA 113 :VNDSILFVNEVDVRE T0340 65 :HAEVVASIKAREDEARLLVVGPST 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRRKP Number of specific fragments extracted= 5 number of extra gaps= 3 total=3956 Number of alignments=1011 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1rgrA)E62 Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0340)H22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0340)R47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0340)L63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0340 5 :PRLCHLRKGPQGYGFN 1rgrA 63 :YEEITLERGNSGLGFS T0340 24 :DKS 1rgrA 82 :GTD T0340 27 :RPGQYIRSVDPGSPAARSG 1rgrA 91 :DPSIFITKIIPGGAAAQDG T0340 48 :AQDRLIEVNGQNVEG 1rgrA 113 :VNDSILFVNEVDVRE T0340 65 :HAEVVASIKAREDEARLLVV 1rgrA 130 :HSAAVEALKEAGSIVRLYVM Number of specific fragments extracted= 5 number of extra gaps= 3 total=3961 Number of alignments=1012 # 1rgrA read from 1rgrA/merged-a2m # found chain 1rgrA in template set Warning: unaligning (T0340)L21 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)A80 Warning: unaligning (T0340)H22 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)A80 Warning: unaligning (T0340)S23 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)G81 Warning: unaligning (T0340)L46 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)R112 Warning: unaligning (T0340)R47 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)R112 Warning: unaligning (T0340)L63 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rgrA)T129 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rgrA)T129 T0340 6 :RLCHLRKGPQGYGFN 1rgrA 64 :EEITLERGNSGLGFS T0340 24 :DKS 1rgrA 82 :GTD T0340 27 :RPGQYIRSVDPGSPAARSG 1rgrA 91 :DPSIFITKIIPGGAAAQDG T0340 48 :AQDRLIEVNGQNVEG 1rgrA 113 :VNDSILFVNEVDVRE T0340 65 :HAEVVASIKAREDEARLLVVGP 1rgrA 130 :HSAAVEALKEAGSIVRLYVMRR Number of specific fragments extracted= 5 number of extra gaps= 3 total=3966 Number of alignments=1013 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lcyA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1lcyA expands to /projects/compbio/data/pdb/1lcy.pdb.gz 1lcyA:# T0340 read from 1lcyA/merged-a2m # 1lcyA read from 1lcyA/merged-a2m # adding 1lcyA to template set # found chain 1lcyA in template set T0340 1 :SMLRPRLCHLR 1lcyA 22 :EKTAPAVVYIE T0340 12 :KGPQGYGFNLHSD 1lcyA 45 :PISNGSGFVVAAD T0340 25 :KSR 1lcyA 115 :SAD T0340 28 :PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHA 1lcyA 256 :HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDV T0340 67 :EVVASIKAREDEARLLVVGPSTRL 1lcyA 302 :SQLAVQIRRGRETLTLYVTPEVTE Number of specific fragments extracted= 5 number of extra gaps= 0 total=3971 Number of alignments=1014 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 3 :LRPRLCHLR 1lcyA 33 :ILDRHPFLG T0340 12 :KGPQGYGFNLHSDK 1lcyA 45 :PISNGSGFVVAADG T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHA 1lcyA 254 :VQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDV T0340 67 :EVVASIKAREDEARLLVVGPSTRL 1lcyA 302 :SQLAVQIRRGRETLTLYVTPEVTE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3975 Number of alignments=1015 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRH 1lcyA 257 :GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAED Number of specific fragments extracted= 1 number of extra gaps= 0 total=3976 Number of alignments=1016 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 18 :GFNLHSDKS 1lcyA 247 :REPSFPDVQ T0340 28 :PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVA 1lcyA 256 :HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAV Number of specific fragments extracted= 2 number of extra gaps= 0 total=3978 Number of alignments=1017 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 1 :SMLRPRLCHLRKGP 1lcyA 227 :RYIGVMMLTLSPSI T0340 15 :QGYGFNLHSDKS 1lcyA 242 :AELQLREPSFPD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASI 1lcyA 291 :AEDVYEAV T0340 74 :AREDEARLLVVGPSTRL 1lcyA 299 :RTQSQLAVQIRRGRETL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3983 Number of alignments=1018 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 1 :SMLRPRLCHL 1lcyA 6 :PPASPRSQYN T0340 11 :RKGPQGYGFNLHSD 1lcyA 44 :VPISNGSGFVVAAD T0340 25 :KS 1lcyA 252 :PD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASI 1lcyA 291 :AEDVYEAV T0340 74 :AREDEARLLVVGPSTRL 1lcyA 299 :RTQSQLAVQIRRGRETL Number of specific fragments extracted= 6 number of extra gaps= 0 total=3989 Number of alignments=1019 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 15 :QGYGFNLHSDKS 1lcyA 242 :AELQLREPSFPD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASI 1lcyA 291 :AEDVYEAV T0340 74 :AREDEARLLVVGPSTRL 1lcyA 299 :RTQSQLAVQIRRGRETL Number of specific fragments extracted= 4 number of extra gaps= 0 total=3993 Number of alignments=1020 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 15 :QGYGFNLHSDKS 1lcyA 242 :AELQLREPSFPD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASI 1lcyA 291 :AEDVYEAV T0340 74 :AREDEARLLVVGP 1lcyA 299 :RTQSQLAVQIRRG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3997 Number of alignments=1021 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSD 1lcyA 34 :LDRHPFLGREVPISNGSGFVVAAD T0340 25 :KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 253 :DVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIK 1lcyA 291 :AEDVYEAVR T0340 75 :REDEARLLVVGPSTRL 1lcyA 300 :TQSQLAVQIRRGRETL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4001 Number of alignments=1022 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSD 1lcyA 34 :LDRHPFLGREVPISNGSGFVVAAD T0340 25 :KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 253 :DVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIK 1lcyA 291 :AEDVYEAVR T0340 75 :REDEARLLVVGPSTRL 1lcyA 300 :TQSQLAVQIRRGRETL Number of specific fragments extracted= 4 number of extra gaps= 0 total=4005 Number of alignments=1023 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSD 1lcyA 35 :DRHPFLGREVPISNGSGFVVAAD T0340 25 :KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 253 :DVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIK 1lcyA 291 :AEDVYEAVR T0340 75 :REDEARLLVV 1lcyA 300 :TQSQLAVQIR Number of specific fragments extracted= 4 number of extra gaps= 0 total=4009 Number of alignments=1024 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSD 1lcyA 37 :HPFLGREVPISNGSGFVVAAD T0340 25 :KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 253 :DVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIK 1lcyA 291 :AEDVYEAVR T0340 75 :REDEARLLVV 1lcyA 300 :TQSQLAVQIR Number of specific fragments extracted= 4 number of extra gaps= 0 total=4013 Number of alignments=1025 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 1lcyA 257 :GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=4014 Number of alignments=1026 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 28 :PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1lcyA 256 :HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=4015 Number of alignments=1027 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0340)R89 because last residue in template chain is (1lcyA)E325 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDK 1lcyA 24 :TAPAVVYIEILDRHPFLGREVPISN T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1lcyA 254 :VQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA T0340 64 :RHAEVVASIKAREDEARLLVVGPST 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPEVT Number of specific fragments extracted= 3 number of extra gaps= 0 total=4018 Number of alignments=1028 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0340)R89 because last residue in template chain is (1lcyA)E325 T0340 1 :SMLRPRLCHLRKGP 1lcyA 24 :TAPAVVYIEILDRH T0340 15 :QGYGFNLH 1lcyA 48 :NGSGFVVA T0340 26 :SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1lcyA 254 :VQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA T0340 64 :RHAEVVASIKAREDEARLLVVGPST 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPEVT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4022 Number of alignments=1029 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 1 :SMLR 1lcyA 6 :PPAS T0340 7 :LCHLRK 1lcyA 30 :YIEILD T0340 13 :GP 1lcyA 37 :HP T0340 17 :YGFNLHSDK 1lcyA 50 :SGFVVAADG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIKAR 1lcyA 291 :AEDVYEAVRTQ T0340 77 :DEARLLVVGPS 1lcyA 302 :SQLAVQIRRGR T0340 88 :TRL 1lcyA 323 :VTE Number of specific fragments extracted= 8 number of extra gaps= 0 total=4030 Number of alignments=1030 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 1 :SMLR 1lcyA 6 :PPAS T0340 5 :PRLCHLR 1lcyA 28 :VVYIEIL T0340 12 :KGPQ 1lcyA 36 :RHPF T0340 17 :YGFNLHSDK 1lcyA 50 :SGFVVAADG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIKARE 1lcyA 291 :AEDVYEAVRTQS T0340 78 :EARLLVVGPS 1lcyA 303 :QLAVQIRRGR T0340 89 :RL 1lcyA 324 :TE Number of specific fragments extracted= 8 number of extra gaps= 0 total=4038 Number of alignments=1031 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1lcyA 257 :GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA Number of specific fragments extracted= 1 number of extra gaps= 0 total=4039 Number of alignments=1032 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA T0340 66 :AEVVASIK 1lcyA 292 :EDVYEAVR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4041 Number of alignments=1033 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIKAR 1lcyA 291 :AEDVYEAVRTQ T0340 77 :DEARLLVVGPS 1lcyA 302 :SQLAVQIRRGR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4044 Number of alignments=1034 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIKARE 1lcyA 291 :AEDVYEAVRTQS T0340 78 :EARLLVVGPS 1lcyA 303 :QLAVQIRRGR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4047 Number of alignments=1035 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0340)S87 because last residue in template chain is (1lcyA)E325 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPG 1lcyA 24 :TAPAVVYIEILDRHPFLGREVPISNGSGF T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1lcyA 258 :VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA T0340 64 :RHAEVVASIKAREDEARLLVVGP 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4050 Number of alignments=1036 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPG 1lcyA 24 :TAPAVVYIEILDRHPFLGREVPISNGSGF T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1lcyA 258 :VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA T0340 64 :RHAEVVASIKAREDEARLLVVGP 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPE Number of specific fragments extracted= 3 number of extra gaps= 0 total=4053 Number of alignments=1037 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 1 :SMLR 1lcyA 6 :PPAS T0340 6 :RLCHLRKGPQ 1lcyA 29 :VYIEILDRHP T0340 17 :YGFNLH 1lcyA 48 :NGSGFV T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 258 :VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIKAR 1lcyA 291 :AEDVYEAVRTQ T0340 77 :DEARLLVVGP 1lcyA 302 :SQLAVQIRRG T0340 87 :STRL 1lcyA 322 :EVTE Number of specific fragments extracted= 7 number of extra gaps= 0 total=4060 Number of alignments=1038 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 1 :SMLR 1lcyA 6 :PPAS T0340 5 :PRLCHLRK 1lcyA 28 :VVYIEILD T0340 13 :GPQ 1lcyA 37 :HPF T0340 17 :YGF 1lcyA 50 :SGF T0340 20 :NLHSDKSRPG 1lcyA 74 :RVRLLSGDTY T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 258 :VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIKARE 1lcyA 291 :AEDVYEAVRTQS T0340 78 :EARLLVVGP 1lcyA 303 :QLAVQIRRG T0340 87 :STRL 1lcyA 322 :EVTE Number of specific fragments extracted= 9 number of extra gaps= 0 total=4069 Number of alignments=1039 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 257 :GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN Number of specific fragments extracted= 1 number of extra gaps= 0 total=4070 Number of alignments=1040 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA T0340 66 :AEVVASIKA 1lcyA 292 :EDVYEAVRT Number of specific fragments extracted= 2 number of extra gaps= 0 total=4072 Number of alignments=1041 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIKAR 1lcyA 291 :AEDVYEAVRTQ T0340 77 :DEARLLVVGPS 1lcyA 302 :SQLAVQIRRGR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4075 Number of alignments=1042 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 24 :DKS 1lcyA 248 :EPS T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIKARE 1lcyA 291 :AEDVYEAVRTQS T0340 78 :EARLLVVGPST 1lcyA 303 :QLAVQIRRGRE Number of specific fragments extracted= 4 number of extra gaps= 0 total=4079 Number of alignments=1043 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0340)R89 because last residue in template chain is (1lcyA)E325 T0340 6 :RLCHLRKGPQGYGFNLHSDKS 1lcyA 29 :VYIEILDRHPFLGREVPISNG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA T0340 64 :RHAEVVASIKAREDEARLLVVGPST 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPEVT Number of specific fragments extracted= 3 number of extra gaps= 0 total=4082 Number of alignments=1044 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0340)R89 because last residue in template chain is (1lcyA)E325 T0340 6 :RLCHLRKGPQGYGFNLHSDKS 1lcyA 29 :VYIEILDRHPFLGREVPISNG T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA T0340 64 :RHAEVVASIKAREDEARLLVVGPST 1lcyA 300 :TQSQLAVQIRRGRETLTLYVTPEVT Number of specific fragments extracted= 3 number of extra gaps= 0 total=4085 Number of alignments=1045 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set Warning: unaligning (T0340)R6 because first residue in template chain is (1lcyA)P6 T0340 7 :LCHLRKGPQG 1lcyA 32 :EILDRHPFLG T0340 17 :YGFNLHSDKS 1lcyA 48 :NGSGFVVAAD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIKAREDEARL 1lcyA 291 :AEDVYEAVRTQSQLAVQ T0340 83 :VVGPST 1lcyA 308 :IRRGRE T0340 89 :RL 1lcyA 324 :TE Number of specific fragments extracted= 6 number of extra gaps= 0 total=4091 Number of alignments=1046 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 5 :PRLCHLRKGPQ 1lcyA 28 :VVYIEILDRHP T0340 17 :YGFNLHSDKS 1lcyA 48 :NGSGFVVAAD T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 255 :QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIKARE 1lcyA 291 :AEDVYEAVRTQS T0340 78 :EARLLVVGPST 1lcyA 303 :QLAVQIRRGRE T0340 89 :RL 1lcyA 324 :TE Number of specific fragments extracted= 6 number of extra gaps= 0 total=4097 Number of alignments=1047 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 22 :HSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1lcyA 250 :SFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA T0340 66 :AEVVASIKAREDEARLLVV 1lcyA 292 :EDVYEAVRTQSQLAVQIRR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4099 Number of alignments=1048 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 24 :DKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1lcyA 252 :PDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA T0340 66 :AEVVASIKARED 1lcyA 292 :EDVYEAVRTQSQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=4101 Number of alignments=1049 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 24 :DKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 252 :PDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIKAREDEARLL 1lcyA 291 :AEDVYEAVRTQSQLAVQI T0340 84 :VGP 1lcyA 309 :RRG Number of specific fragments extracted= 3 number of extra gaps= 0 total=4104 Number of alignments=1050 # 1lcyA read from 1lcyA/merged-a2m # found chain 1lcyA in template set T0340 25 :KSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1lcyA 253 :DVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN T0340 65 :HAEVVASIKARE 1lcyA 291 :AEDVYEAVRTQS T0340 78 :EARLLVVGPS 1lcyA 303 :QLAVQIRRGR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4107 Number of alignments=1051 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sotA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1sotA expands to /projects/compbio/data/pdb/1sot.pdb.gz 1sotA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0340 read from 1sotA/merged-a2m # 1sotA read from 1sotA/merged-a2m # adding 1sotA to template set # found chain 1sotA in template set Warning: unaligning (T0340)P28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)G281 Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 1 :SMLRPRLCHLRK 1sotA 66 :LNTNSHNQLEIR T0340 14 :PQGYGFNLHSD 1sotA 78 :TLGSGVIMDQR T0340 25 :KSR 1sotA 261 :IGG T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4111 Number of alignments=1052 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)P28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)G281 Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 2 :MLRPR 1sotA 53 :RAAPA T0340 7 :LCHLRK 1sotA 72 :NQLEIR T0340 14 :PQGYGFNLHSD 1sotA 78 :TLGSGVIMDQR T0340 25 :KSR 1sotA 261 :IGG T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 5 number of extra gaps= 0 total=4116 Number of alignments=1053 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=4117 Number of alignments=1054 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=4118 Number of alignments=1055 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)P28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)G281 Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0340)R89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSD 1sotA 65 :GLNTNSHNQLEIRTLGSGVIMDQR T0340 25 :KSR 1sotA 261 :IGG T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV T0340 90 :L 1sotA 342 :L Number of specific fragments extracted= 4 number of extra gaps= 0 total=4122 Number of alignments=1056 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)E230 Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0340)R89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0340 1 :SMLRPRLCHLRKGP 1sotA 65 :GLNTNSHNQLEIRT T0340 16 :GYGFNLHSDKSRP 1sotA 231 :GIGFAIPFQLATK T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV T0340 90 :L 1sotA 342 :L Number of specific fragments extracted= 4 number of extra gaps= 0 total=4126 Number of alignments=1057 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=4127 Number of alignments=1058 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)Q15 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)E230 Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 16 :GYGFN 1sotA 231 :GIGFA T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 2 number of extra gaps= 0 total=4129 Number of alignments=1059 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQ 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=4130 Number of alignments=1060 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQN 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKP T0340 60 :VEGLRHAEVVASIK 1sotA 313 :ISALETMDQVAEIR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4132 Number of alignments=1061 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDK 1sotA 50 :AVRRAAPAVVNVYNRGLNTNSHNQL T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAIS T0340 65 :HAEVVASIKAR 1sotA 315 :ALETMDQVAEI T0340 76 :EDEARLL 1sotA 328 :GSVIPVV Number of specific fragments extracted= 4 number of extra gaps= 0 total=4136 Number of alignments=1062 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 4 :RPRLCHLRKG 1sotA 55 :APAVVNVYNR T0340 18 :GFNLHS 1sotA 65 :GLNTNS T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA T0340 66 :AEVVASIKAR 1sotA 316 :LETMDQVAEI T0340 76 :EDEARLL 1sotA 328 :GSVIPVV Number of specific fragments extracted= 5 number of extra gaps= 0 total=4141 Number of alignments=1063 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 1 :SMLRPR 1sotA 42 :MTPASY T0340 7 :LCHLRK 1sotA 60 :NVYNRG T0340 25 :K 1sotA 67 :N T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAI T0340 64 :RHAEVVASIKAR 1sotA 314 :SALETMDQVAEI T0340 76 :EDEARLL 1sotA 328 :GSVIPVV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4147 Number of alignments=1064 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0340 1 :SMLR 1sotA 42 :MTPA T0340 5 :P 1sotA 58 :V T0340 8 :CHLRK 1sotA 59 :VNVYN T0340 13 :GPQ 1sotA 69 :NSH T0340 17 :YGFNLHSDK 1sotA 79 :LGSGVIMDQ T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAI T0340 64 :RHAEVVASIKAR 1sotA 314 :SALETMDQVAEI T0340 76 :EDEA 1sotA 328 :GSVI T0340 80 :RLLVVGPS 1sotA 345 :QVTIQEYP Number of specific fragments extracted= 9 number of extra gaps= 0 total=4156 Number of alignments=1065 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA Number of specific fragments extracted= 1 number of extra gaps= 0 total=4157 Number of alignments=1066 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA T0340 66 :AEVVASIKAR 1sotA 316 :LETMDQVAEI T0340 76 :EDEARLL 1sotA 328 :GSVIPVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4160 Number of alignments=1067 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0340)R89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAI T0340 64 :RHAEVVASIKAR 1sotA 314 :SALETMDQVAEI T0340 76 :EDEARLL 1sotA 328 :GSVIPVV T0340 90 :L 1sotA 342 :L Number of specific fragments extracted= 4 number of extra gaps= 0 total=4164 Number of alignments=1068 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0340)R89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAI T0340 64 :RHAEVVASIKAR 1sotA 314 :SALETMDQVAEI T0340 76 :EDEARLL 1sotA 328 :GSVIPVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4167 Number of alignments=1069 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 1 :SMLRPRLCHLRKGP 1sotA 52 :RRAAPAVVNVYNRG T0340 15 :QGYGFNLHSDKSRPG 1sotA 77 :RTLGSGVIMDQRGYI T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAI T0340 64 :RHAEVVASIKAR 1sotA 314 :SALETMDQVAEI T0340 76 :EDEARLL 1sotA 328 :GSVIPVV Number of specific fragments extracted= 5 number of extra gaps= 0 total=4172 Number of alignments=1070 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 3 :LRPRLCHLRKGP 1sotA 54 :AAPAVVNVYNRG T0340 16 :GYGFNLH 1sotA 78 :TLGSGVI T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAIS T0340 65 :HAEVVASIKAR 1sotA 315 :ALETMDQVAEI T0340 76 :EDEARLL 1sotA 328 :GSVIPVV Number of specific fragments extracted= 5 number of extra gaps= 0 total=4177 Number of alignments=1071 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 1 :SMLRPR 1sotA 42 :MTPASY T0340 7 :LCHLRK 1sotA 60 :NVYNRG T0340 13 :GP 1sotA 69 :NS T0340 17 :YGFNLHSDKS 1sotA 79 :LGSGVIMDQR T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAI T0340 64 :RHAEVVASIKAR 1sotA 314 :SALETMDQVAEI T0340 76 :EDEARLL 1sotA 328 :GSVIPVV Number of specific fragments extracted= 7 number of extra gaps= 0 total=4184 Number of alignments=1072 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 1 :SMLR 1sotA 42 :MTPA T0340 5 :PRLCHLRK 1sotA 58 :VVNVYNRG T0340 13 :GPQ 1sotA 69 :NSH T0340 17 :YGFNLHSDKS 1sotA 79 :LGSGVIMDQR T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAI T0340 64 :RHAEVVASIKAR 1sotA 314 :SALETMDQVAEI T0340 76 :EDEARLL 1sotA 328 :GSVIPVV Number of specific fragments extracted= 7 number of extra gaps= 0 total=4191 Number of alignments=1073 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAI T0340 64 :RHAEVVASIKAR 1sotA 314 :SALETMDQVAEI T0340 76 :EDEARLL 1sotA 328 :GSVIPVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4194 Number of alignments=1074 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAIS T0340 65 :HAEVVASIKAR 1sotA 315 :ALETMDQVAEI T0340 76 :EDEARLL 1sotA 328 :GSVIPVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4197 Number of alignments=1075 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0340)T88 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAI T0340 64 :RHAEVVASIKAR 1sotA 314 :SALETMDQVAEI T0340 76 :EDEARLL 1sotA 328 :GSVIPVV T0340 89 :RL 1sotA 342 :LT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4201 Number of alignments=1076 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0340)T88 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAI T0340 64 :RHAEVVASIKAR 1sotA 314 :SALETMDQVAEI T0340 76 :EDEARLL 1sotA 328 :GSVIPVV T0340 89 :R 1sotA 342 :L Number of specific fragments extracted= 4 number of extra gaps= 0 total=4205 Number of alignments=1077 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V84 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0340)L90 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKS 1sotA 42 :MTPASYNLAVRRAAPAVVNVYNRGLN T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA T0340 65 :HAEVVASIKAREDEARLLV 1sotA 316 :LETMDQVAEIRPGSVIPVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4208 Number of alignments=1078 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V84 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0340)L90 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0340 1 :S 1sotA 42 :M T0340 13 :GPQGYGFNLHSDK 1sotA 75 :EIRTLGSGVIMDQ T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA T0340 64 :RHAEVVA 1sotA 318 :TMDQVAE T0340 72 :I 1sotA 325 :I T0340 75 :REDEARLLV 1sotA 326 :RPGSVIPVV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4214 Number of alignments=1079 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V84 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0340)L90 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0340 1 :SMLRPR 1sotA 42 :MTPASY T0340 7 :LCHLRKGPQ 1sotA 61 :VYNRGLNTN T0340 16 :GYGFNLHSDKS 1sotA 78 :TLGSGVIMDQR T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA T0340 66 :AEVVASIKA 1sotA 316 :LETMDQVAE T0340 75 :REDEARLLV 1sotA 326 :RPGSVIPVV Number of specific fragments extracted= 6 number of extra gaps= 0 total=4220 Number of alignments=1080 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V83 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0340)R89 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0340 1 :SMLR 1sotA 42 :MTPA T0340 5 :PRLCHLRKGP 1sotA 58 :VVNVYNRGLN T0340 16 :GYGFNLHSDKS 1sotA 78 :TLGSGVIMDQR T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAI T0340 64 :RHAEVVASIKA 1sotA 314 :SALETMDQVAE T0340 75 :REDEARLL 1sotA 327 :PGSVIPVV T0340 90 :L 1sotA 342 :L Number of specific fragments extracted= 7 number of extra gaps= 0 total=4227 Number of alignments=1081 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQN 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKP Number of specific fragments extracted= 1 number of extra gaps= 0 total=4228 Number of alignments=1082 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V84 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA T0340 64 :RHAEVVAS 1sotA 318 :TMDQVAEI T0340 75 :REDEARLLV 1sotA 326 :RPGSVIPVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4231 Number of alignments=1083 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 Warning: unaligning (T0340)V84 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1sotA)Q341 Warning: unaligning (T0340)L90 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)Q341 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA T0340 66 :AEVVASIKA 1sotA 316 :LETMDQVAE T0340 75 :REDEARLLV 1sotA 326 :RPGSVIPVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=4234 Number of alignments=1084 # 1sotA read from 1sotA/merged-a2m # found chain 1sotA in template set Warning: unaligning (T0340)G29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1sotA)G281 T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 1sotA 282 :IVVNEVSPDGPAANAGIQVNDLIISVDNKPAI T0340 64 :RHAEVVASIKAREDEARL 1sotA 314 :SALETMDQVAEIRPGSVI Number of specific fragments extracted= 2 number of extra gaps= 0 total=4236 Number of alignments=1085 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f5yA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 2f5yA/merged-a2m # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0340)S87 because last residue in template chain is (2f5yA)V95 T0340 5 :PRLCHLRKGPQGYGFNLHSDK 2f5yA 16 :YRQITIPRGKDGFGFTICCDS T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 37 :PVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4239 Number of alignments=1086 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0340)S87 because last residue in template chain is (2f5yA)V95 T0340 5 :PRLCHLRKGPQGYGFNLHSDK 2f5yA 16 :YRQITIPRGKDGFGFTICCDS T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 37 :PVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4242 Number of alignments=1087 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHSDK 2f5yA 16 :YRQITIPRGKDGFGFTICCDS T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 37 :PVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4245 Number of alignments=1088 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHSDK 2f5yA 16 :YRQITIPRGKDGFGFTICCDS T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 37 :PVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 2 total=4248 Number of alignments=1089 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0340)S87 because last residue in template chain is (2f5yA)V95 T0340 5 :PRLCHLRKGPQGYGFNLHSD 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0340 28 :PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 36 :SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4251 Number of alignments=1090 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0340)S87 because last residue in template chain is (2f5yA)V95 T0340 5 :PRLCHLRKGPQGYGFNLHSD 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0340 28 :PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 36 :SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4254 Number of alignments=1091 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHSD 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0340 28 :PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 36 :SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4257 Number of alignments=1092 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHSD 2f5yA 16 :YRQITIPRGKDGFGFTICCD T0340 28 :PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 36 :SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 2 total=4260 Number of alignments=1093 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)R6 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)L7 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0340)S87 because last residue in template chain is (2f5yA)V95 T0340 8 :CHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 16 :YRQITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=4262 Number of alignments=1094 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)R6 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)L7 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0340)S87 because last residue in template chain is (2f5yA)V95 T0340 8 :CHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 16 :YRQITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 2 number of extra gaps= 1 total=4264 Number of alignments=1095 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L7 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 8 :CHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 16 :YRQITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVG 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWR Number of specific fragments extracted= 2 number of extra gaps= 2 total=4266 Number of alignments=1096 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 9 :HLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 17 :RQITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVG 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWR Number of specific fragments extracted= 2 number of extra gaps= 1 total=4268 Number of alignments=1097 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRP 2f5yA 16 :YRQITIPRGKDGFGFTICCDSPVR T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 40 :VQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLV 2f5yA 71 :WKCVELAHEIRSCPSEIILLV Number of specific fragments extracted= 3 number of extra gaps= 1 total=4271 Number of alignments=1098 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHSDKSR 2f5yA 16 :YRQITIPRGKDGFGFTICCDSPV T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 39 :RVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVV 2f5yA 71 :WKCVELAHEIRSCPSEIILLVW Number of specific fragments extracted= 3 number of extra gaps= 2 total=4274 Number of alignments=1099 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0340)S87 because last residue in template chain is (2f5yA)V95 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4277 Number of alignments=1100 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0340)S87 because last residue in template chain is (2f5yA)V95 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4280 Number of alignments=1101 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0340)S87 because last residue in template chain is (2f5yA)V95 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4283 Number of alignments=1102 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0340)S87 because last residue in template chain is (2f5yA)V95 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4286 Number of alignments=1103 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4289 Number of alignments=1104 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4292 Number of alignments=1105 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0340)S87 because last residue in template chain is (2f5yA)V95 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4295 Number of alignments=1106 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 Warning: unaligning (T0340)S87 because last residue in template chain is (2f5yA)V95 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4298 Number of alignments=1107 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4301 Number of alignments=1108 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4304 Number of alignments=1109 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4307 Number of alignments=1110 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4310 Number of alignments=1111 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVG 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWR Number of specific fragments extracted= 3 number of extra gaps= 1 total=4313 Number of alignments=1112 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVG 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWR Number of specific fragments extracted= 3 number of extra gaps= 1 total=4316 Number of alignments=1113 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4319 Number of alignments=1114 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4322 Number of alignments=1115 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVG 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWR Number of specific fragments extracted= 3 number of extra gaps= 1 total=4325 Number of alignments=1116 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVG 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWR Number of specific fragments extracted= 3 number of extra gaps= 1 total=4328 Number of alignments=1117 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVG 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWR Number of specific fragments extracted= 3 number of extra gaps= 1 total=4331 Number of alignments=1118 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4334 Number of alignments=1119 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVV 2f5yA 71 :WKCVELAHEIRSCPSEIILLVW Number of specific fragments extracted= 3 number of extra gaps= 2 total=4337 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVG 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWR Number of specific fragments extracted= 3 number of extra gaps= 2 total=4340 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4343 Number of alignments=1120 # 2f5yA read from 2f5yA/merged-a2m # found chain 2f5yA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (2f5yA)M14 Warning: unaligning (T0340)R4 because of BadResidue code BAD_PEPTIDE at template residue (2f5yA)R15 Warning: unaligning (T0340)E61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2f5yA)H70 Warning: unaligning (T0340)G62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2f5yA)H70 T0340 5 :PRLCHLRKGPQGYGFNLHS 2f5yA 16 :YRQITIPRGKDGFGFTICC T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 2f5yA 35 :DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPV T0340 63 :LRHAEVVASIKAREDEARLLVVGP 2f5yA 71 :WKCVELAHEIRSCPSEIILLVWRM Number of specific fragments extracted= 3 number of extra gaps= 1 total=4346 Number of alignments=1121 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kwaA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kwaA expands to /projects/compbio/data/pdb/1kwa.pdb.gz 1kwaA:# T0340 read from 1kwaA/merged-a2m # 1kwaA read from 1kwaA/merged-a2m # adding 1kwaA to template set # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRK 1kwaA 488 :SRLVQFQK T0340 13 :GPQGYGFNLHS 1kwaA 497 :TDEPMGITLKM T0340 25 :KSRPGQYIRSVDPGSPAARSG 1kwaA 508 :NELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4350 Number of alignments=1122 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 5 :PRLCHLRK 1kwaA 488 :SRLVQFQK T0340 13 :GPQGYGFNLHSD 1kwaA 497 :TDEPMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 4 number of extra gaps= 0 total=4354 Number of alignments=1123 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHSDKSR 1kwaA 500 :PMGITLKMNELN T0340 29 :GQYIRSVDPGSPAARSG 1kwaA 512 :HCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4358 Number of alignments=1124 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHSDKSR 1kwaA 500 :PMGITLKMNELN T0340 29 :GQYIRSVDPGSPAARSG 1kwaA 512 :HCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4362 Number of alignments=1125 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHSDKSR 1kwaA 500 :PMGITLKMNELN T0340 29 :GQYIRSVDPGSPAARSG 1kwaA 512 :HCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 4 number of extra gaps= 0 total=4366 Number of alignments=1126 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHSDKSR 1kwaA 500 :PMGITLKMNELN T0340 29 :GQYIRSVDPGSPAARSG 1kwaA 512 :HCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY Number of specific fragments extracted= 4 number of extra gaps= 0 total=4370 Number of alignments=1127 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKG 1kwaA 488 :SRLVQFQKN T0340 14 :PQGYGFNLHSDKSR 1kwaA 498 :DEPMGITLKMNELN T0340 29 :GQYIRSVDPGSPAARSG 1kwaA 512 :HCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4374 Number of alignments=1128 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKG 1kwaA 488 :SRLVQFQKN T0340 14 :PQGYGFNLHSDKSR 1kwaA 498 :DEPMGITLKMNELN T0340 29 :GQYIRSVDPGSPAARSG 1kwaA 512 :HCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4378 Number of alignments=1129 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 6 :RLCHLRKG 1kwaA 489 :RLVQFQKN T0340 14 :PQGYGFNLHSDKSR 1kwaA 498 :DEPMGITLKMNELN T0340 29 :GQYIRSVDPGSPAARSG 1kwaA 512 :HCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 4 number of extra gaps= 0 total=4382 Number of alignments=1130 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 6 :RLCHLRKG 1kwaA 489 :RLVQFQKN T0340 14 :PQGYGFNLHSDKSR 1kwaA 498 :DEPMGITLKMNELN T0340 29 :GQYIRSVDPGSPAARSG 1kwaA 512 :HCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY Number of specific fragments extracted= 4 number of extra gaps= 0 total=4386 Number of alignments=1131 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 1 :SM 1kwaA 487 :RS T0340 5 :PRLCHLRKGPQGYGFNLHSD 1kwaA 489 :RLVQFQKNTDEPMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4390 Number of alignments=1132 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 1 :SM 1kwaA 487 :RS T0340 5 :PRLCHLRKGPQGYGFNLHSD 1kwaA 489 :RLVQFQKNTDEPMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4394 Number of alignments=1133 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 5 :PRLCHLRKGPQGYGFNLHSD 1kwaA 489 :RLVQFQKNTDEPMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 3 number of extra gaps= 0 total=4397 Number of alignments=1134 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 6 :RLCHLRKGPQGYGFNLHSD 1kwaA 490 :LVQFQKNTDEPMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 3 number of extra gaps= 0 total=4400 Number of alignments=1135 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 46 :LRAQDRLIEVNGQNV 1kwaA 530 :LHVGDEIREINGISV Number of specific fragments extracted= 1 number of extra gaps= 0 total=4401 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 31 :YIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 1kwaA 515 :VARIMHGGMIHRQGTLHVGDEIREINGISVAN Number of specific fragments extracted= 1 number of extra gaps= 0 total=4402 Number of alignments=1136 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHSD 1kwaA 500 :PMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4406 Number of alignments=1137 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHS 1kwaA 500 :PMGITLKM T0340 25 :KSRPGQYIRSVDPGSPAARSG 1kwaA 508 :NELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4410 Number of alignments=1138 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHS 1kwaA 500 :PMGITLKM T0340 25 :KSRPGQYIRSVDPGSPAARSG 1kwaA 508 :NELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4414 Number of alignments=1139 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHSD 1kwaA 500 :PMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4418 Number of alignments=1140 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 6 :RLCHLRKGPQ 1kwaA 489 :RLVQFQKNTD T0340 16 :GYGFNLHSD 1kwaA 500 :PMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP Number of specific fragments extracted= 4 number of extra gaps= 0 total=4422 Number of alignments=1141 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 6 :RLCHLRKGPQ 1kwaA 489 :RLVQFQKNTD T0340 16 :GYGFNLHS 1kwaA 500 :PMGITLKM T0340 25 :KSRPGQYIRSVDPGSPAARSG 1kwaA 508 :NELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 4 number of extra gaps= 0 total=4426 Number of alignments=1142 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHS 1kwaA 500 :PMGITLKM T0340 25 :KSRPGQYIRSVDPGSPAARSG 1kwaA 508 :NELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4430 Number of alignments=1143 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHSD 1kwaA 500 :PMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4434 Number of alignments=1144 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHSD 1kwaA 500 :PMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4438 Number of alignments=1145 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHSD 1kwaA 500 :PMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4442 Number of alignments=1146 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHSD 1kwaA 500 :PMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4446 Number of alignments=1147 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHSD 1kwaA 500 :PMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4450 Number of alignments=1148 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 6 :RLCHLRKGPQ 1kwaA 489 :RLVQFQKNTD T0340 16 :GYGFNLHSD 1kwaA 500 :PMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 4 number of extra gaps= 0 total=4454 Number of alignments=1149 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 6 :RLCHLRKGPQ 1kwaA 489 :RLVQFQKNTD T0340 16 :GYGFNLHSD 1kwaA 500 :PMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 4 number of extra gaps= 0 total=4458 Number of alignments=1150 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHSD 1kwaA 500 :PMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4462 Number of alignments=1151 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKGPQ 1kwaA 488 :SRLVQFQKNTD T0340 16 :GYGFNLHSD 1kwaA 500 :PMGITLKMN T0340 26 :SRPGQYIRSVDPGSPAARSG 1kwaA 509 :ELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS T0340 88 :TRL 1kwaA 572 :REF Number of specific fragments extracted= 5 number of extra gaps= 0 total=4467 Number of alignments=1152 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1kwaA 488 :SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 2 number of extra gaps= 0 total=4469 Number of alignments=1153 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRKG 1kwaA 488 :SRLVQFQKN T0340 14 :PQGYGFNLHSDK 1kwaA 498 :DEPMGITLKMNE T0340 27 :RPGQYIRSVDPGSPAARSG 1kwaA 510 :LNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4473 Number of alignments=1154 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRK 1kwaA 488 :SRLVQFQK T0340 13 :GPQGYGFNLHSDKS 1kwaA 497 :TDEPMGITLKMNEL T0340 28 :PGQYIRSVDPGSPAARSG 1kwaA 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4477 Number of alignments=1155 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRK 1kwaA 488 :SRLVQFQK T0340 13 :GPQGYGFNLHSDKS 1kwaA 497 :TDEPMGITLKMNEL T0340 28 :PGQYIRSVDPGSPAARSG 1kwaA 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4481 Number of alignments=1156 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 28 :PGQYIRSVDPGSPAARSG 1kwaA 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIV Number of specific fragments extracted= 2 number of extra gaps= 0 total=4483 Number of alignments=1157 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 13 :GPQGYGFNLHSDK 1kwaA 497 :TDEPMGITLKMNE T0340 27 :RPGQYIRSVDPGSPAARSG 1kwaA 510 :LNHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP Number of specific fragments extracted= 3 number of extra gaps= 0 total=4486 Number of alignments=1158 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaA)R487 T0340 5 :PRLCHLRK 1kwaA 488 :SRLVQFQK T0340 13 :GPQGYGFNLHSDKS 1kwaA 497 :TDEPMGITLKMNEL T0340 28 :PGQYIRSVDPGSPAARSG 1kwaA 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4490 Number of alignments=1159 # 1kwaA read from 1kwaA/merged-a2m # found chain 1kwaA in template set T0340 5 :PRLCHLRK 1kwaA 488 :SRLVQFQK T0340 13 :GPQGYGFNLHSDKS 1kwaA 497 :TDEPMGITLKMNEL T0340 28 :PGQYIRSVDPGSPAARSG 1kwaA 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaA 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4494 Number of alignments=1160 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kwaB/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kwaB expands to /projects/compbio/data/pdb/1kwa.pdb.gz 1kwaB:# T0340 read from 1kwaB/merged-a2m # 1kwaB read from 1kwaB/merged-a2m # adding 1kwaB to template set # found chain 1kwaB in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 5 :PRLCHLRK 1kwaB 488 :SRLVQFQK T0340 13 :GPQGYGFNLH 1kwaB 497 :TDEPMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE Number of specific fragments extracted= 4 number of extra gaps= 1 total=4498 Number of alignments=1161 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 5 :PRLCHLRK 1kwaB 488 :SRLVQFQK T0340 13 :GPQGYGFNLH 1kwaB 497 :TDEPMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR Number of specific fragments extracted= 4 number of extra gaps= 1 total=4502 Number of alignments=1162 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)D24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 1 :S 1kwaB 487 :R T0340 4 :RPRLCHLRKGPQGYGFNLH 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 1 total=4506 Number of alignments=1163 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)D24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 1 :S 1kwaB 487 :R T0340 4 :RPRLCHLRKGPQGYGFNLH 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 1 total=4510 Number of alignments=1164 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)D24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 5 :PRLCHLRKGPQGYGFNLH 1kwaB 489 :RLVQFQKNTDEPMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 3 number of extra gaps= 1 total=4513 Number of alignments=1165 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)D24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 5 :PRLCHLRKGPQGYGFNLH 1kwaB 489 :RLVQFQKNTDEPMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 3 number of extra gaps= 1 total=4516 Number of alignments=1166 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set T0340 46 :LRAQDRLIEVNGQNV 1kwaB 530 :LHVGDEIREINGISV Number of specific fragments extracted= 1 number of extra gaps= 0 total=4517 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set T0340 43 :RSGLRAQDRLIEVNGQNVE 1kwaB 527 :QGTLHVGDEIREINGISVA Number of specific fragments extracted= 1 number of extra gaps= 0 total=4518 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0340)T88 because last residue in template chain is (1kwaB)F574 T0340 5 :PRLCHLRKGPQ 1kwaB 488 :SRLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY Number of specific fragments extracted= 4 number of extra gaps= 1 total=4522 Number of alignments=1167 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0340)T88 because last residue in template chain is (1kwaB)F574 T0340 5 :PRLCHLRKGPQ 1kwaB 488 :SRLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY Number of specific fragments extracted= 4 number of extra gaps= 1 total=4526 Number of alignments=1168 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0340)T88 because last residue in template chain is (1kwaB)F574 T0340 5 :PRLCHLRKGPQ 1kwaB 488 :SRLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY Number of specific fragments extracted= 4 number of extra gaps= 1 total=4530 Number of alignments=1169 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0340)T88 because last residue in template chain is (1kwaB)F574 T0340 5 :PRLCHLRKGPQ 1kwaB 488 :SRLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY Number of specific fragments extracted= 4 number of extra gaps= 1 total=4534 Number of alignments=1170 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 6 :RLCHLRKGPQ 1kwaB 489 :RLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP Number of specific fragments extracted= 4 number of extra gaps= 1 total=4538 Number of alignments=1171 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 6 :RLCHLRKGPQ 1kwaB 489 :RLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 4 number of extra gaps= 1 total=4542 Number of alignments=1172 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 5 :PRLCHLRKGPQ 1kwaB 488 :SRLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYREF Number of specific fragments extracted= 4 number of extra gaps= 1 total=4546 Number of alignments=1173 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 5 :PRLCHLRKGPQ 1kwaB 488 :SRLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY Number of specific fragments extracted= 4 number of extra gaps= 1 total=4550 Number of alignments=1174 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0340)T88 because last residue in template chain is (1kwaB)F574 T0340 5 :PRLCHLRKGPQ 1kwaB 488 :SRLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS T0340 87 :S 1kwaB 573 :E Number of specific fragments extracted= 5 number of extra gaps= 1 total=4555 Number of alignments=1175 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)D24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0340)T88 because last residue in template chain is (1kwaB)F574 T0340 5 :PRLCHLRKGPQ 1kwaB 488 :SRLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS T0340 87 :S 1kwaB 573 :E Number of specific fragments extracted= 5 number of extra gaps= 1 total=4560 Number of alignments=1176 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)D24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0340)T88 because last residue in template chain is (1kwaB)F574 T0340 5 :PRLCHLRKGPQ 1kwaB 488 :SRLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS T0340 87 :S 1kwaB 573 :E Number of specific fragments extracted= 5 number of extra gaps= 1 total=4565 Number of alignments=1177 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0340)T88 because last residue in template chain is (1kwaB)F574 T0340 5 :PRLCHLRKGPQ 1kwaB 488 :SRLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS T0340 87 :S 1kwaB 573 :E Number of specific fragments extracted= 5 number of extra gaps= 1 total=4570 Number of alignments=1178 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 6 :RLCHLRKGPQ 1kwaB 489 :RLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 4 number of extra gaps= 1 total=4574 Number of alignments=1179 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)D24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 6 :RLCHLRKGPQ 1kwaB 489 :RLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 4 number of extra gaps= 1 total=4578 Number of alignments=1180 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)D24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 5 :PRLCHLRKGPQ 1kwaB 488 :SRLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS T0340 88 :TRL 1kwaB 572 :REF Number of specific fragments extracted= 5 number of extra gaps= 1 total=4583 Number of alignments=1181 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 5 :PRLCHLRKGPQ 1kwaB 488 :SRLVQFQKNTD T0340 16 :GYGFNLH 1kwaB 500 :PMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS Number of specific fragments extracted= 4 number of extra gaps= 1 total=4587 Number of alignments=1182 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0340)T88 because last residue in template chain is (1kwaB)F574 T0340 4 :RPRLCHLRKGPQGYGFNLH 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIV T0340 85 :GPS 1kwaB 571 :YRE Number of specific fragments extracted= 4 number of extra gaps= 1 total=4591 Number of alignments=1183 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0340)T88 because last residue in template chain is (1kwaB)F574 T0340 4 :RPRLCHLRKGPQGYGFNLH 1kwaB 488 :SRLVQFQKNTDEPMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP T0340 86 :PS 1kwaB 572 :RE Number of specific fragments extracted= 4 number of extra gaps= 1 total=4595 Number of alignments=1184 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0340)T88 because last residue in template chain is (1kwaB)F574 T0340 5 :PRLCHLRKG 1kwaB 488 :SRLVQFQKN T0340 14 :PQGYGFNLH 1kwaB 498 :DEPMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP T0340 86 :PS 1kwaB 572 :RE Number of specific fragments extracted= 5 number of extra gaps= 1 total=4600 Number of alignments=1185 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1kwaB)R487 Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)D24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 Warning: unaligning (T0340)T88 because last residue in template chain is (1kwaB)F574 T0340 5 :PRLCHLRK 1kwaB 488 :SRLVQFQK T0340 13 :GPQGYGFNLH 1kwaB 497 :TDEPMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS T0340 87 :S 1kwaB 573 :E Number of specific fragments extracted= 5 number of extra gaps= 1 total=4605 Number of alignments=1186 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIV Number of specific fragments extracted= 2 number of extra gaps= 0 total=4607 Number of alignments=1187 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 14 :PQGYGFNLH 1kwaB 498 :DEPMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP Number of specific fragments extracted= 3 number of extra gaps= 1 total=4610 Number of alignments=1188 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)R27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 5 :PRLCHLRKG 1kwaB 488 :SRLVQFQKN T0340 14 :PQGYGFNLH 1kwaB 498 :DEPMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY Number of specific fragments extracted= 4 number of extra gaps= 1 total=4614 Number of alignments=1189 # 1kwaB read from 1kwaB/merged-a2m # found chain 1kwaB in template set Warning: unaligning (T0340)S23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kwaB)L510 Warning: unaligning (T0340)D24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kwaB)L510 T0340 5 :PRLCHLRK 1kwaB 488 :SRLVQFQK T0340 13 :GPQGYGFNLH 1kwaB 497 :TDEPMGITLK T0340 28 :PGQYIRSVDPGSPAARSG 1kwaB 511 :NHCIVARIMHGGMIHRQG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1kwaB 530 :LHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP Number of specific fragments extracted= 4 number of extra gaps= 1 total=4618 Number of alignments=1190 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pdr/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1pdr expands to /projects/compbio/data/pdb/1pdr.pdb.gz 1pdr:Warning: there is no chain 1pdr will retry with 1pdrA # T0340 read from 1pdr/merged-a2m # 1pdr read from 1pdr/merged-a2m # adding 1pdr to template set # found chain 1pdr in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARS 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLS T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1pdr 505 :ELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE T0340 89 :RL 1pdr 554 :HA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4621 Number of alignments=1191 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARS 1pdr 463 :EPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLS T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1pdr 505 :ELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRP Number of specific fragments extracted= 2 number of extra gaps= 0 total=4623 Number of alignments=1192 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4625 Number of alignments=1193 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4627 Number of alignments=1194 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 462 :REPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4629 Number of alignments=1195 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 462 :REPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4631 Number of alignments=1196 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 464 :PRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIK 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALK Number of specific fragments extracted= 2 number of extra gaps= 0 total=4633 Number of alignments=1197 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 463 :EPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKA 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKN Number of specific fragments extracted= 2 number of extra gaps= 0 total=4635 Number of alignments=1198 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRP T0340 88 :TRL 1pdr 553 :QHA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4638 Number of alignments=1199 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRP T0340 88 :TRL 1pdr 553 :QHA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4641 Number of alignments=1200 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRP Number of specific fragments extracted= 2 number of extra gaps= 0 total=4643 Number of alignments=1201 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4645 Number of alignments=1202 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 463 :EPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRP Number of specific fragments extracted= 2 number of extra gaps= 0 total=4647 Number of alignments=1203 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 462 :REPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRP Number of specific fragments extracted= 2 number of extra gaps= 0 total=4649 Number of alignments=1204 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4651 Number of alignments=1205 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4653 Number of alignments=1206 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR T0340 87 :STRL 1pdr 552 :RQHA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4656 Number of alignments=1207 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR T0340 87 :STRL 1pdr 552 :RQHA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4659 Number of alignments=1208 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4661 Number of alignments=1209 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4663 Number of alignments=1210 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 462 :REPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4665 Number of alignments=1211 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 462 :REPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4667 Number of alignments=1212 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4669 Number of alignments=1213 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4671 Number of alignments=1214 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4673 Number of alignments=1215 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEY Number of specific fragments extracted= 2 number of extra gaps= 0 total=4675 Number of alignments=1216 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4677 Number of alignments=1217 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 461 :TREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4679 Number of alignments=1218 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 463 :EPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=4681 Number of alignments=1219 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 463 :EPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4683 Number of alignments=1220 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 460 :ITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4685 Number of alignments=1221 # 1pdr read from 1pdr/merged-a2m # found chain 1pdr in template set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG 1pdr 462 :REPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1pdr 506 :LRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYR Number of specific fragments extracted= 2 number of extra gaps= 0 total=4687 Number of alignments=1222 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1iu0A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1iu0A expands to /projects/compbio/data/pdb/1iu0.pdb.gz 1iu0A:# T0340 read from 1iu0A/merged-a2m # 1iu0A read from 1iu0A/merged-a2m # adding 1iu0A to template set # found chain 1iu0A in template set T0340 10 :LRKGPQGYGFNLHSDKSR 1iu0A 8 :LERGNSGLGFSIAGGTDN T0340 28 :PGQYIRSVDPGSPAARSG 1iu0A 32 :PSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1iu0A 51 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM Number of specific fragments extracted= 3 number of extra gaps= 0 total=4690 Number of alignments=1223 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set T0340 9 :HLRKGPQGYGFNLHSDKS 1iu0A 7 :TLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1iu0A 31 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1iu0A 51 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM Number of specific fragments extracted= 3 number of extra gaps= 0 total=4693 Number of alignments=1224 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0340)P86 because last residue in template chain is (1iu0A)R91 T0340 4 :RPRLCHLRKGPQGYGFNLHSDK 1iu0A 2 :EYEEITLERGNSGLGFSIAGGT T0340 26 :SRPGQYIRSVDPGSPAARSG 1iu0A 30 :DDPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1iu0A 51 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4696 Number of alignments=1225 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0340)P86 because last residue in template chain is (1iu0A)R91 T0340 4 :RPRLCHLRKGPQGYGFNLHSDK 1iu0A 2 :EYEEITLERGNSGLGFSIAGGT T0340 26 :SRPGQYIRSVDPGSPAARSG 1iu0A 30 :DDPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1iu0A 51 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4699 Number of alignments=1226 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0340)P86 because last residue in template chain is (1iu0A)R91 T0340 4 :RPRLCHLRKGPQGYGFNLHSDK 1iu0A 2 :EYEEITLERGNSGLGFSIAGGT T0340 26 :SRPGQYIRSVDPGSPAARSG 1iu0A 30 :DDPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1iu0A 51 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4702 Number of alignments=1227 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDK 1iu0A 2 :EYEEITLERGNSGLGFSIAGGT T0340 26 :SRPGQYIRSVDPGSPAARSG 1iu0A 30 :DDPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1iu0A 51 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4705 Number of alignments=1228 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0340)P86 because last residue in template chain is (1iu0A)R91 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1iu0A 31 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1iu0A 51 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4708 Number of alignments=1229 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0340)P86 because last residue in template chain is (1iu0A)R91 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1iu0A 31 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1iu0A 51 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4711 Number of alignments=1230 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0340)P86 because last residue in template chain is (1iu0A)R91 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1iu0A 31 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1iu0A 51 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4714 Number of alignments=1231 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1iu0A 31 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1iu0A 51 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4717 Number of alignments=1232 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0340)P86 because last residue in template chain is (1iu0A)R91 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1iu0A 31 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1iu0A 51 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4720 Number of alignments=1233 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1iu0A)M1 Warning: unaligning (T0340)P86 because last residue in template chain is (1iu0A)R91 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1iu0A 31 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1iu0A 51 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4723 Number of alignments=1234 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1iu0A 2 :EYEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1iu0A 31 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1iu0A 51 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM Number of specific fragments extracted= 3 number of extra gaps= 0 total=4726 Number of alignments=1235 # 1iu0A read from 1iu0A/merged-a2m # found chain 1iu0A in template set Warning: unaligning (T0340)P86 because last residue in template chain is (1iu0A)R91 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1iu0A 3 :YEEITLERGNSGLGFSIAGGTD T0340 27 :RPGQYIRSVDPGSPAARSG 1iu0A 31 :DPSIFITKIIPGGAAAQDG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1iu0A 51 :LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR Number of specific fragments extracted= 3 number of extra gaps= 0 total=4729 Number of alignments=1236 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n99A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1n99A/merged-a2m # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGP 1n99A 113 :REVILCKDQ T0340 15 :QGYGFNLHSDKS 1n99A 123 :GKIGLRLKSIDN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 135 :GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGPSTRL 1n99A 191 :RDRPFER Number of specific fragments extracted= 5 number of extra gaps= 1 total=4734 Number of alignments=1237 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGP 1n99A 113 :REVILCKDQ T0340 15 :QGYGFNLHSDKS 1n99A 123 :GKIGLRLKSIDN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 135 :GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGPSTRL 1n99A 191 :RDRPFER Number of specific fragments extracted= 5 number of extra gaps= 1 total=4739 Number of alignments=1238 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGP 1n99A 113 :REVILCKDQ T0340 15 :QGYGFNLHSDKS 1n99A 123 :GKIGLRLKSIDN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 135 :GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGPSTRL 1n99A 191 :RDRPFER Number of specific fragments extracted= 5 number of extra gaps= 1 total=4744 Number of alignments=1239 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGP 1n99A 113 :REVILCKDQ T0340 15 :QGYGFNLHSDKS 1n99A 123 :GKIGLRLKSIDN T0340 29 :GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 135 :GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGPS 1n99A 191 :RDRP Number of specific fragments extracted= 5 number of extra gaps= 1 total=4749 Number of alignments=1240 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set T0340 32 :IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEV 1n99A 218 :ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=4750 Number of alignments=1241 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEV 1n99A 216 :GKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=4751 Number of alignments=1242 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGPS 1n99A 191 :RDRP T0340 88 :TRL 1n99A 271 :PAF Number of specific fragments extracted= 6 number of extra gaps= 1 total=4757 Number of alignments=1243 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGPS 1n99A 191 :RDRP T0340 88 :TRL 1n99A 271 :PAF Number of specific fragments extracted= 6 number of extra gaps= 1 total=4763 Number of alignments=1244 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGPS 1n99A 191 :RDRP T0340 88 :TRL 1n99A 271 :PAF Number of specific fragments extracted= 6 number of extra gaps= 1 total=4769 Number of alignments=1245 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGPS 1n99A 191 :RDRP T0340 88 :TRL 1n99A 271 :PAF Number of specific fragments extracted= 6 number of extra gaps= 1 total=4775 Number of alignments=1246 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGPS 1n99A 191 :RDRP Number of specific fragments extracted= 5 number of extra gaps= 1 total=4780 Number of alignments=1247 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGPS 1n99A 191 :RDRP Number of specific fragments extracted= 5 number of extra gaps= 1 total=4785 Number of alignments=1248 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGPST 1n99A 191 :RDRPF Number of specific fragments extracted= 5 number of extra gaps= 1 total=4790 Number of alignments=1249 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGPS 1n99A 191 :RDRP Number of specific fragments extracted= 5 number of extra gaps= 1 total=4795 Number of alignments=1250 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGP 1n99A 191 :RDR T0340 87 :STRL 1n99A 270 :MPAF Number of specific fragments extracted= 6 number of extra gaps= 1 total=4801 Number of alignments=1251 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGP 1n99A 191 :RDR T0340 88 :TRL 1n99A 271 :PAF Number of specific fragments extracted= 6 number of extra gaps= 1 total=4807 Number of alignments=1252 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGP 1n99A 191 :RDR T0340 88 :TRL 1n99A 271 :PAF Number of specific fragments extracted= 6 number of extra gaps= 1 total=4813 Number of alignments=1253 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGP 1n99A 191 :RDR T0340 88 :TRL 1n99A 271 :PAF Number of specific fragments extracted= 6 number of extra gaps= 1 total=4819 Number of alignments=1254 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGP 1n99A 191 :RDR Number of specific fragments extracted= 5 number of extra gaps= 1 total=4824 Number of alignments=1255 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGPS 1n99A 191 :RDRP Number of specific fragments extracted= 5 number of extra gaps= 1 total=4829 Number of alignments=1256 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGPST 1n99A 191 :RDRPF Number of specific fragments extracted= 5 number of extra gaps= 1 total=4834 Number of alignments=1257 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 17 :YGFNLHSD 1n99A 125 :IGLRLKSI T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1n99A 133 :DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA T0340 76 :EDEARL 1n99A 183 :GEKITM T0340 84 :VGPS 1n99A 191 :RDRP Number of specific fragments extracted= 5 number of extra gaps= 1 total=4839 Number of alignments=1258 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 18 :GFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1n99A 124 :KIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM T0340 85 :GPSTRL 1n99A 191 :RDRPFE Number of specific fragments extracted= 3 number of extra gaps= 1 total=4842 Number of alignments=1259 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKG 1n99A 113 :REVILCKD T0340 15 :QGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1n99A 121 :QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM T0340 85 :GPSTRL 1n99A 191 :RDRPFE Number of specific fragments extracted= 3 number of extra gaps= 1 total=4845 Number of alignments=1260 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQGY 1n99A 113 :REVILCKDQDGK T0340 19 :FNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1n99A 125 :IGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM T0340 85 :GPSTRL 1n99A 191 :RDRPFE Number of specific fragments extracted= 3 number of extra gaps= 1 total=4848 Number of alignments=1261 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 19 :FNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1n99A 125 :IGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM T0340 85 :GPSTRL 1n99A 191 :RDRPFE Number of specific fragments extracted= 3 number of extra gaps= 1 total=4851 Number of alignments=1262 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 9 :HLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1n99A 115 :VILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM Number of specific fragments extracted= 1 number of extra gaps= 1 total=4852 Number of alignments=1263 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 9 :HLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1n99A 115 :VILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM T0340 85 :GP 1n99A 191 :RD Number of specific fragments extracted= 2 number of extra gaps= 1 total=4854 Number of alignments=1264 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQGY 1n99A 113 :REVILCKDQDGK T0340 19 :FNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1n99A 125 :IGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM T0340 85 :GPS 1n99A 191 :RDR Number of specific fragments extracted= 3 number of extra gaps= 1 total=4857 Number of alignments=1265 # 1n99A read from 1n99A/merged-a2m # found chain 1n99A in template set Warning: unaligning (T0340)P5 because first residue in template chain is (1n99A)P112 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1n99A)I190 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1n99A)I190 T0340 6 :RLCHLRKGPQG 1n99A 113 :REVILCKDQDG T0340 19 :FNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1n99A 125 :IGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM T0340 85 :GP 1n99A 191 :RD Number of specific fragments extracted= 3 number of extra gaps= 1 total=4860 Number of alignments=1266 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g9oA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1g9oA/merged-a2m # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4861 Number of alignments=1267 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET T0340 89 :RL 1g9oA 98 :QL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4863 Number of alignments=1268 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=4864 Number of alignments=1269 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=4865 Number of alignments=1270 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD Number of specific fragments extracted= 1 number of extra gaps= 0 total=4866 Number of alignments=1271 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD Number of specific fragments extracted= 1 number of extra gaps= 0 total=4867 Number of alignments=1272 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=4868 Number of alignments=1273 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4869 Number of alignments=1274 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 1 :S 1g9oA 9 :R T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4871 Number of alignments=1275 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 1 :SM 1g9oA 9 :RM T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 2 number of extra gaps= 0 total=4873 Number of alignments=1276 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4874 Number of alignments=1277 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1g9oA 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4875 Number of alignments=1278 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET T0340 89 :RL 1g9oA 98 :QL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4877 Number of alignments=1279 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4878 Number of alignments=1280 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET Number of specific fragments extracted= 1 number of extra gaps= 0 total=4879 Number of alignments=1281 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET Number of specific fragments extracted= 1 number of extra gaps= 0 total=4880 Number of alignments=1282 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE T0340 88 :TRL 1g9oA 97 :EQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4882 Number of alignments=1283 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE T0340 88 :TRL 1g9oA 97 :EQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4884 Number of alignments=1284 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE T0340 88 :TRL 1g9oA 97 :EQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4886 Number of alignments=1285 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE T0340 88 :TRL 1g9oA 97 :EQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4888 Number of alignments=1286 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1g9oA 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4889 Number of alignments=1287 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1g9oA 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4890 Number of alignments=1288 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4891 Number of alignments=1289 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE T0340 88 :TR 1g9oA 97 :EQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=4893 Number of alignments=1290 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP T0340 87 :STRL 1g9oA 96 :DEQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4895 Number of alignments=1291 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP T0340 87 :STRL 1g9oA 96 :DEQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4897 Number of alignments=1292 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP T0340 87 :STRL 1g9oA 96 :DEQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4899 Number of alignments=1293 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP T0340 87 :STRL 1g9oA 96 :DEQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4901 Number of alignments=1294 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1g9oA 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=4902 Number of alignments=1295 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1g9oA 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4903 Number of alignments=1296 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4904 Number of alignments=1297 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP T0340 87 :STRL 1g9oA 96 :DEQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4906 Number of alignments=1298 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4907 Number of alignments=1299 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4908 Number of alignments=1300 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET T0340 89 :RL 1g9oA 98 :QL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4910 Number of alignments=1301 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP T0340 87 :STRL 1g9oA 96 :DEQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=4912 Number of alignments=1302 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1g9oA 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=4913 Number of alignments=1303 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1g9oA 12 :PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP Number of specific fragments extracted= 1 number of extra gaps= 0 total=4914 Number of alignments=1304 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1g9oA)R9 T0340 3 :LRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1g9oA 10 :MLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4915 Number of alignments=1305 # 1g9oA read from 1g9oA/merged-a2m # found chain 1g9oA in training set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTRL 1g9oA 11 :LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDE Number of specific fragments extracted= 1 number of extra gaps= 0 total=4916 Number of alignments=1306 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1l6oA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1l6oA expands to /projects/compbio/data/pdb/1l6o.pdb.gz 1l6oA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0340 read from 1l6oA/merged-a2m # 1l6oA read from 1l6oA/merged-a2m # adding 1l6oA to template set # found chain 1l6oA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LR 1l6oA 257 :LN T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=4929 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LR 1l6oA 257 :LN T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=4942 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LR 1l6oA 257 :LN T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 11 total=4955 Number of alignments=1307 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LR 1l6oA 257 :LN T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=4968 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=4981 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 1 :S 1l6oA 251 :M T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 13 total=4995 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5008 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5021 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)S23 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 T0340 24 :DKS 1l6oA 275 :ERG T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVV 1l6oA 317 :NDDAV Number of specific fragments extracted= 7 number of extra gaps= 6 total=5028 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 T0340 24 :DKS 1l6oA 275 :ERG T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 42 :ARSGLRAQDRLIEV 1l6oA 294 :ADGRIEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL Number of specific fragments extracted= 6 number of extra gaps= 5 total=5034 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 26 :S 1l6oA 277 :G T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 13 total=5048 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 26 :S 1l6oA 277 :G T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 13 total=5062 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 26 :S 1l6oA 277 :G T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 13 total=5076 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHS 1l6oA 269 :IVG T0340 24 :DKS 1l6oA 275 :ERG T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 12 total=5090 Number of alignments=1308 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 26 :S 1l6oA 277 :G T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 13 total=5104 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 T0340 6 :RL 1l6oA 253 :IT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 26 :S 1l6oA 277 :G T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 13 total=5118 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 26 :S 1l6oA 277 :G T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 13 total=5132 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHS 1l6oA 269 :IVG T0340 24 :DKS 1l6oA 275 :ERG T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 12 total=5146 Number of alignments=1309 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5159 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5172 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5185 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHS 1l6oA 269 :IVG T0340 24 :DKS 1l6oA 275 :ERG T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 12 total=5199 Number of alignments=1310 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5212 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 T0340 6 :RL 1l6oA 253 :IT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 12 total=5225 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5238 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHS 1l6oA 269 :IVG T0340 24 :DKS 1l6oA 275 :ERG T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :R 1l6oA 327 :I T0340 76 :EDEAR 1l6oA 331 :PGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 14 number of extra gaps= 12 total=5252 Number of alignments=1311 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0340)L7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 4 :RPR 1l6oA 252 :IIT T0340 9 :HLR 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :REDEAR 1l6oA 330 :KPGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 12 number of extra gaps= 12 total=5264 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)L3 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0340)L7 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 4 :RPR 1l6oA 252 :IIT T0340 9 :HLR 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :REDEAR 1l6oA 330 :KPGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 12 number of extra gaps= 12 total=5276 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :REDEAR 1l6oA 330 :KPGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 12 number of extra gaps= 13 total=5288 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHS 1l6oA 269 :IVG T0340 25 :KS 1l6oA 275 :ER T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 74 :AREDEAR 1l6oA 329 :HKPGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5301 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL Number of specific fragments extracted= 8 number of extra gaps= 9 total=5309 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)K12 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N263 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 T0340 11 :R 1l6oA 259 :M T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :RE 1l6oA 327 :IV Number of specific fragments extracted= 10 number of extra gaps= 9 total=5319 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)R4 because first residue in template chain is (1l6oA)M251 Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)K25 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)N274 Warning: unaligning (T0340)S26 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)A74 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHSD 1l6oA 269 :IVGQ T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 75 :REDEAR 1l6oA 330 :KPGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 12 number of extra gaps= 13 total=5331 # 1l6oA read from 1l6oA/merged-a2m # found chain 1l6oA in template set Warning: unaligning (T0340)C8 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T256 Warning: unaligning (T0340)H9 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T256 Warning: unaligning (T0340)G13 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)K261 Warning: unaligning (T0340)P14 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)K261 Warning: unaligning (T0340)Q15 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N263 Warning: unaligning (T0340)G16 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)L265 Warning: unaligning (T0340)Y17 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)L265 Warning: unaligning (T0340)F19 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)S268 Warning: unaligning (T0340)N20 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)S268 Warning: unaligning (T0340)D24 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)N274 Warning: unaligning (T0340)R27 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)G279 Warning: unaligning (T0340)P28 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G279 Warning: unaligning (T0340)G29 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)G280 Warning: unaligning (T0340)A41 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)A293 Warning: unaligning (T0340)A42 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)A293 Warning: unaligning (T0340)N56 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D309 Warning: unaligning (T0340)G57 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)D309 Warning: unaligning (T0340)N59 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1l6oA)F312 Warning: unaligning (T0340)V60 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1l6oA)F312 Warning: unaligning (T0340)G62 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)M315 Warning: unaligning (T0340)L63 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)M315 Warning: unaligning (T0340)R64 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l6oA)S316 Warning: unaligning (T0340)K73 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)D326 Warning: unaligning (T0340)L81 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)T337 Warning: unaligning (T0340)L82 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)T337 Warning: unaligning (T0340)V83 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)A339 Warning: unaligning (T0340)V84 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)A339 Warning: unaligning (T0340)P86 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1l6oA)E342 Warning: unaligning (T0340)S87 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1l6oA)E342 Warning: unaligning (T0340)T88 because of BadResidue code BAD_PEPTIDE in next template residue (1l6oA)H344 Warning: unaligning (T0340)R89 because of BadResidue code BAD_PEPTIDE at template residue (1l6oA)H344 T0340 5 :PRL 1l6oA 252 :IIT T0340 10 :LRK 1l6oA 257 :LNM T0340 18 :G 1l6oA 266 :G T0340 21 :LHS 1l6oA 269 :IVG T0340 25 :KS 1l6oA 275 :ER T0340 30 :QYIRSVDPGSP 1l6oA 281 :IYIGSIMKGGA T0340 43 :RSG 1l6oA 294 :ADG T0340 46 :LRAQDRLIEV 1l6oA 298 :IEPGDMLLQV T0340 58 :Q 1l6oA 310 :I T0340 61 :E 1l6oA 313 :E T0340 65 :HAEVVASI 1l6oA 317 :NDDAVRVL T0340 74 :AREDEAR 1l6oA 329 :HKPGPIV T0340 85 :G 1l6oA 340 :K Number of specific fragments extracted= 13 number of extra gaps= 13 total=5344 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q3oA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1q3oA/merged-a2m # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0340)R89 because last residue in template chain is (1q3oA)H687 T0340 1 :SMLRPRLCHLR 1q3oA 585 :YIIKEKTVLLQ T0340 12 :KGPQGYGFNLHSDKSRPG 1q3oA 597 :KDSEGFGFVLRGAKAQTP T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 3 number of extra gaps= 0 total=5347 Number of alignments=1312 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0340)R89 because last residue in template chain is (1q3oA)H687 T0340 1 :SMLRPRLCHLR 1q3oA 585 :YIIKEKTVLLQ T0340 12 :KGPQGYGFNLHSDKSRPG 1q3oA 597 :KDSEGFGFVLRGAKAQTP T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 3 number of extra gaps= 0 total=5350 Number of alignments=1313 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 2 :MLRPRLCHLR 1q3oA 586 :IIKEKTVLLQ T0340 12 :KGPQGYGFNLHSDKSRPG 1q3oA 597 :KDSEGFGFVLRGAKAQTP T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5353 Number of alignments=1314 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 3 :LRPRLCHLR 1q3oA 587 :IKEKTVLLQ T0340 12 :KGPQGYGFNLHSDKSRPG 1q3oA 597 :KDSEGFGFVLRGAKAQTP T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM Number of specific fragments extracted= 3 number of extra gaps= 0 total=5356 Number of alignments=1315 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0340)R89 because last residue in template chain is (1q3oA)H687 T0340 1 :SMLRPRLCHLRK 1q3oA 585 :YIIKEKTVLLQK T0340 13 :GPQGYGFNLHSDKS 1q3oA 598 :DSEGFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 3 number of extra gaps= 0 total=5359 Number of alignments=1316 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 1 :SMLRPRLCHLRK 1q3oA 585 :YIIKEKTVLLQK T0340 13 :GPQGYGFNLHSDKS 1q3oA 598 :DSEGFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT T0340 89 :R 1q3oA 686 :R Number of specific fragments extracted= 4 number of extra gaps= 0 total=5363 Number of alignments=1317 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 2 :MLRPRLCHLRK 1q3oA 586 :IIKEKTVLLQK T0340 13 :GPQGYGFNLHSDKS 1q3oA 598 :DSEGFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5366 Number of alignments=1318 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 3 :LRPRLCHLRK 1q3oA 587 :IKEKTVLLQK T0340 13 :GPQGYGFNLHSDKS 1q3oA 598 :DSEGFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM Number of specific fragments extracted= 3 number of extra gaps= 0 total=5369 Number of alignments=1319 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0340)S87 because last residue in template chain is (1q3oA)H687 T0340 1 :SMLRPRLCHLRKGPQ 1q3oA 585 :YIIKEKTVLLQKKDS T0340 16 :GYGFNLHSDKS 1q3oA 601 :GFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG T0340 77 :DEARLLVVG 1q3oA 674 :GNTLMVKVV T0340 86 :P 1q3oA 686 :R Number of specific fragments extracted= 5 number of extra gaps= 0 total=5374 Number of alignments=1320 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0340)P86 because last residue in template chain is (1q3oA)H687 T0340 1 :SMLRPRLCHLRKGPQ 1q3oA 585 :YIIKEKTVLLQKKDS T0340 16 :GYGFNLHSDKS 1q3oA 601 :GFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV T0340 85 :G 1q3oA 686 :R Number of specific fragments extracted= 4 number of extra gaps= 0 total=5378 Number of alignments=1321 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 2 :MLRPRLCHLRKGPQ 1q3oA 586 :IIKEKTVLLQKKDS T0340 16 :GYGFNLHSDKS 1q3oA 601 :GFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5381 Number of alignments=1322 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 3 :LRPRLCHLRKGPQ 1q3oA 587 :IKEKTVLLQKKDS T0340 16 :GYGFNLHSDKS 1q3oA 601 :GFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5384 Number of alignments=1323 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=5385 Number of alignments=1324 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 28 :PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 1q3oA 626 :ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLM Number of specific fragments extracted= 1 number of extra gaps= 0 total=5386 Number of alignments=1325 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 1 :SMLRPRLCHLRK 1q3oA 585 :YIIKEKTVLLQK T0340 13 :GPQGYGFNLHSDKSRPG 1q3oA 598 :DSEGFGFVLRGAKAQTP T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT Number of specific fragments extracted= 3 number of extra gaps= 0 total=5389 Number of alignments=1326 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 1 :SMLRPRLCHLRK 1q3oA 585 :YIIKEKTVLLQK T0340 13 :GPQGYGFNLHSDK 1q3oA 598 :DSEGFGFVLRGAK T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT Number of specific fragments extracted= 3 number of extra gaps= 0 total=5392 Number of alignments=1327 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1q3oA)D584 T0340 4 :RP 1q3oA 585 :YI T0340 6 :RLCHLRKGPQ 1q3oA 590 :KTVLLQKKDS T0340 16 :GYGFNLHSDKSRPG 1q3oA 601 :GFGFVLRGAKAQTP T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5396 Number of alignments=1328 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1q3oA)D584 Warning: unaligning (T0340)S87 because last residue in template chain is (1q3oA)H687 T0340 4 :R 1q3oA 585 :Y T0340 6 :RLCHLRKGPQ 1q3oA 590 :KTVLLQKKDS T0340 16 :GYGFNLHSDK 1q3oA 601 :GFGFVLRGAK T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV T0340 85 :GP 1q3oA 685 :TR Number of specific fragments extracted= 5 number of extra gaps= 0 total=5401 Number of alignments=1329 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 2 :MLRPRLCHLRK 1q3oA 586 :IIKEKTVLLQK T0340 13 :GPQGYGFNLHSDKSRPG 1q3oA 598 :DSEGFGFVLRGAKAQTP T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5404 Number of alignments=1330 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 4 :RPRLCHLRK 1q3oA 588 :KEKTVLLQK T0340 13 :GPQGYGFNLHSDK 1q3oA 598 :DSEGFGFVLRGAK T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5407 Number of alignments=1331 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 6 :RLCHLRKGPQ 1q3oA 590 :KTVLLQKKDS T0340 16 :GYGFNLHSDKSRPG 1q3oA 601 :GFGFVLRGAKAQTP T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR Number of specific fragments extracted= 3 number of extra gaps= 0 total=5410 Number of alignments=1332 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 6 :RLCHLRKGPQ 1q3oA 590 :KTVLLQKKDS T0340 16 :GYGFNLHSDK 1q3oA 601 :GFGFVLRGAK T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5413 Number of alignments=1333 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0340)S87 because last residue in template chain is (1q3oA)H687 T0340 1 :SMLRPRLCHLRKGPQ 1q3oA 585 :YIIKEKTVLLQKKDS T0340 16 :GYGFNLHSDKSRPG 1q3oA 601 :GFGFVLRGAKAQTP T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5416 Number of alignments=1334 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0340)S87 because last residue in template chain is (1q3oA)H687 T0340 1 :SMLRPRLCHLRKGP 1q3oA 585 :YIIKEKTVLLQKKD T0340 15 :QGYGFNLHSDKS 1q3oA 600 :EGFGFVLRGAKA T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5419 Number of alignments=1335 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1q3oA)D584 Warning: unaligning (T0340)S87 because last residue in template chain is (1q3oA)H687 T0340 4 :RP 1q3oA 585 :YI T0340 6 :RLCHLRKGP 1q3oA 590 :KTVLLQKKD T0340 15 :QGYGFNLHSDKS 1q3oA 600 :EGFGFVLRGAKA T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5423 Number of alignments=1336 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1q3oA)D584 Warning: unaligning (T0340)S87 because last residue in template chain is (1q3oA)H687 T0340 4 :R 1q3oA 585 :Y T0340 6 :RLCHLRKGPQ 1q3oA 590 :KTVLLQKKDS T0340 16 :GYGFNLHSDKS 1q3oA 601 :GFGFVLRGAKA T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV Number of specific fragments extracted= 4 number of extra gaps= 0 total=5427 Number of alignments=1337 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRPG 1q3oA 589 :EKTVLLQKKDSEGFGFVLRGAKAQTP T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 2 number of extra gaps= 0 total=5429 Number of alignments=1338 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 5 :PRLCHLRK 1q3oA 589 :EKTVLLQK T0340 13 :GPQGYGFNLHSDKS 1q3oA 598 :DSEGFGFVLRGAKA T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5432 Number of alignments=1339 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 6 :RLCHLRKGP 1q3oA 590 :KTVLLQKKD T0340 15 :QGYGFNLHSDKS 1q3oA 600 :EGFGFVLRGAKA T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM Number of specific fragments extracted= 3 number of extra gaps= 0 total=5435 Number of alignments=1340 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 6 :RLCHLRKGPQ 1q3oA 590 :KTVLLQKKDS T0340 16 :GYGFNLHSDKS 1q3oA 601 :GFGFVLRGAKA T0340 30 :QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1q3oA 628 :QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM Number of specific fragments extracted= 3 number of extra gaps= 0 total=5438 Number of alignments=1341 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0340)S87 because last residue in template chain is (1q3oA)H687 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKS 1q3oA 587 :IKEKTVLLQKKDSEGFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM T0340 86 :P 1q3oA 686 :R Number of specific fragments extracted= 3 number of extra gaps= 0 total=5441 Number of alignments=1342 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0340)S87 because last residue in template chain is (1q3oA)H687 T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKS 1q3oA 587 :IKEKTVLLQKKDSEGFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM T0340 86 :P 1q3oA 686 :R Number of specific fragments extracted= 3 number of extra gaps= 0 total=5444 Number of alignments=1343 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1q3oA)D584 Warning: unaligning (T0340)S87 because last residue in template chain is (1q3oA)H687 T0340 4 :RP 1q3oA 585 :YI T0340 6 :RLCHLR 1q3oA 590 :KTVLLQ T0340 12 :KGPQGYGFNLHSDKS 1q3oA 597 :KDSEGFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM T0340 86 :P 1q3oA 686 :R Number of specific fragments extracted= 5 number of extra gaps= 0 total=5449 Number of alignments=1344 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1q3oA)D584 Warning: unaligning (T0340)S87 because last residue in template chain is (1q3oA)H687 T0340 4 :R 1q3oA 585 :Y T0340 5 :PRLCHLR 1q3oA 589 :EKTVLLQ T0340 12 :KGPQGYGFNLHSDKS 1q3oA 597 :KDSEGFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM T0340 86 :P 1q3oA 686 :R Number of specific fragments extracted= 5 number of extra gaps= 0 total=5454 Number of alignments=1345 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 2 :MLRPRLCHLRKGPQGYGFNLHSDKS 1q3oA 587 :IKEKTVLLQKKDSEGFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 2 number of extra gaps= 0 total=5456 Number of alignments=1346 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 6 :RLCHLRKGPQGYGFNLHSDKS 1q3oA 591 :TVLLQKKDSEGFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV Number of specific fragments extracted= 2 number of extra gaps= 0 total=5458 Number of alignments=1347 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 6 :RLCHLR 1q3oA 590 :KTVLLQ T0340 12 :KGPQGYGFNLHSDKS 1q3oA 597 :KDSEGFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV Number of specific fragments extracted= 3 number of extra gaps= 0 total=5461 Number of alignments=1348 # 1q3oA read from 1q3oA/merged-a2m # found chain 1q3oA in training set T0340 6 :RLCHLR 1q3oA 590 :KTVLLQ T0340 12 :KGPQGYGFNLHSDKS 1q3oA 597 :KDSEGFGFVLRGAKA T0340 27 :RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1q3oA 625 :PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM Number of specific fragments extracted= 3 number of extra gaps= 0 total=5464 Number of alignments=1349 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n7fA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1n7fA/merged-a2m # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5467 Number of alignments=1350 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5470 Number of alignments=1351 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5473 Number of alignments=1352 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5476 Number of alignments=1353 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRP 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7fA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5479 Number of alignments=1354 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5482 Number of alignments=1355 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRP 1n7fA 670 :IYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7fA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5485 Number of alignments=1356 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7fA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5488 Number of alignments=1357 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5491 Number of alignments=1358 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5494 Number of alignments=1359 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7fA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5497 Number of alignments=1360 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0340 6 :RLCHLRKGPQGYGFNLHSDKS 1n7fA 671 :YTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5500 Number of alignments=1361 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0340 32 :IRSVDPGSPAARSG 1n7fA 698 :ISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVV 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAI Number of specific fragments extracted= 2 number of extra gaps= 0 total=5502 Number of alignments=1362 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0340 29 :GQYIRSVDPGSPAARSG 1n7fA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIK 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=5504 Number of alignments=1363 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRP 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7fA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5507 Number of alignments=1364 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRP 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7fA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5510 Number of alignments=1365 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRP 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7fA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5513 Number of alignments=1366 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRP 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7fA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5516 Number of alignments=1367 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRP 1n7fA 670 :IYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7fA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5519 Number of alignments=1368 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 5 :PRLCHLRKGPQGYGFNLHSDKSRP 1n7fA 670 :IYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7fA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5522 Number of alignments=1369 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRP 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7fA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5525 Number of alignments=1370 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKSRP 1n7fA 669 :IIYTVELKRYGGPLGITISGTEEPF T0340 29 :GQYIRSVDPGSPAARSG 1n7fA 695 :PIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5528 Number of alignments=1371 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5531 Number of alignments=1372 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5534 Number of alignments=1373 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5537 Number of alignments=1374 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5540 Number of alignments=1375 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7fA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5543 Number of alignments=1376 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7fA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5546 Number of alignments=1377 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5549 Number of alignments=1378 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5552 Number of alignments=1379 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7fA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5555 Number of alignments=1380 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)R4 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7fA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5558 Number of alignments=1381 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5561 Number of alignments=1382 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5564 Number of alignments=1383 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7fA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKI Number of specific fragments extracted= 3 number of extra gaps= 0 total=5567 Number of alignments=1384 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set T0340 5 :PRLCHLRKGPQGYGFNLHSDKS 1n7fA 670 :IYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5570 Number of alignments=1385 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5573 Number of alignments=1386 # 1n7fA read from 1n7fA/merged-a2m # found chain 1n7fA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1n7fA)A668 Warning: unaligning (T0340)P86 because last residue in template chain is (1n7fA)Q753 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1n7fA 669 :IIYTVELKRYGGPLGITISGTEE T0340 27 :RPGQYIRSVDPGSPAARSG 1n7fA 693 :FDPIIISSLTKGGLAERTG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1n7fA 713 :IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=5576 Number of alignments=1387 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ihjA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0340 read from 1ihjA/merged-a2m # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGPQ 1ihjA 13 :ELIHMVTLDKTGK T0340 16 :GYGFNLHSD 1ihjA 27 :SFGICIVRG T0340 25 :KS 1ihjA 38 :KD T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 5 number of extra gaps= 0 total=5581 Number of alignments=1388 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGPQ 1ihjA 13 :ELIHMVTLDKTGK T0340 16 :GYGFNLHSD 1ihjA 27 :SFGICIVRG T0340 25 :KS 1ihjA 38 :KD T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 5 number of extra gaps= 0 total=5586 Number of alignments=1389 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0340 3 :LRPRLCHLRKGPQ 1ihjA 13 :ELIHMVTLDKTGK T0340 16 :GYGFNLHSD 1ihjA 27 :SFGICIVRG T0340 25 :KS 1ihjA 38 :KD T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=5591 Number of alignments=1390 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0340 4 :RPRLCHLRKGPQ 1ihjA 14 :LIHMVTLDKTGK T0340 16 :GYGFNLHSD 1ihjA 27 :SFGICIVRG T0340 25 :KS 1ihjA 38 :KD T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=5596 Number of alignments=1391 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGPQ 1ihjA 13 :ELIHMVTLDKTGK T0340 16 :GYGFNLHSDKSRP 1ihjA 27 :SFGICIVRGEVKD T0340 29 :GQYIRSVDPGSPAARSG 1ihjA 47 :GIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5600 Number of alignments=1392 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGPQ 1ihjA 13 :ELIHMVTLDKTGK T0340 16 :GYGFNLHSDKSRP 1ihjA 27 :SFGICIVRGEVKD T0340 29 :GQYIRSVDPGSPAARSG 1ihjA 47 :GIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5604 Number of alignments=1393 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0340 5 :PRLCHLRKGPQ 1ihjA 15 :IHMVTLDKTGK T0340 16 :GYGFNLHSDKSRP 1ihjA 27 :SFGICIVRGEVKD T0340 29 :GQYIRSVDPGSPAARSG 1ihjA 47 :GIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=5608 Number of alignments=1394 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0340 5 :PRLCHLRKGPQ 1ihjA 15 :IHMVTLDKTGK T0340 16 :GYGFNLHSDKSRP 1ihjA 27 :SFGICIVRGEVKD T0340 29 :GQYIRSVDPGSPAARSG 1ihjA 47 :GIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=5612 Number of alignments=1395 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 1 :SMLRPRLCHLRKGPQGYGFNLHSDKSRP 1ihjA 12 :GELIHMVTLDKTGKKSFGICIVRGEVKD T0340 29 :GQYIRSVDPGSPAARSG 1ihjA 47 :GIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 0 total=5615 Number of alignments=1396 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 2 :M 1ihjA 13 :E T0340 4 :RPRLCHLRK 1ihjA 14 :LIHMVTLDK T0340 13 :GPQGYGFNLHSDKSR 1ihjA 24 :GKKSFGICIVRGEVK T0340 28 :PGQYIRSVDPGSPAARSG 1ihjA 46 :TGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 5 number of extra gaps= 0 total=5620 Number of alignments=1397 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0340 5 :PRLCHLRK 1ihjA 15 :IHMVTLDK T0340 13 :GPQGYGFNLHSDKSRP 1ihjA 24 :GKKSFGICIVRGEVKD T0340 29 :GQYIRSVDPGSPAARSG 1ihjA 47 :GIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI Number of specific fragments extracted= 4 number of extra gaps= 0 total=5624 Number of alignments=1398 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0340 5 :PRLCHLRK 1ihjA 15 :IHMVTLDK T0340 13 :GPQGYGFNLHSDKSR 1ihjA 24 :GKKSFGICIVRGEVK T0340 28 :PGQYIRSVDPGSPAARSG 1ihjA 46 :TGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI Number of specific fragments extracted= 4 number of extra gaps= 0 total=5628 Number of alignments=1399 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRK 1ihjA 13 :ELIHMVTLDK T0340 13 :GPQGYGFNLHSDKS 1ihjA 24 :GKKSFGICIVRGEV T0340 27 :RPGQYIRSVDPGSPAARS 1ihjA 45 :TTGIFIKGIVPDSPAHLC T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 64 :RLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5632 Number of alignments=1400 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 4 :RPRLCHLRK 1ihjA 14 :LIHMVTLDK T0340 13 :GPQGYGFNLHSDKS 1ihjA 24 :GKKSFGICIVRGEV T0340 27 :RPGQYIRSVDPGSPAARS 1ihjA 45 :TTGIFIKGIVPDSPAHLC T0340 45 :GLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 64 :RLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5636 Number of alignments=1401 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0340 29 :GQYIRSVDPGSPAARSG 1ihjA 47 :GIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARL 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL Number of specific fragments extracted= 2 number of extra gaps= 0 total=5638 Number of alignments=1402 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0340 26 :SRPGQYIRSVDPGSPAARSG 1ihjA 44 :KTTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKARED 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADF Number of specific fragments extracted= 2 number of extra gaps= 0 total=5640 Number of alignments=1403 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGPQ 1ihjA 13 :ELIHMVTLDKTGK T0340 16 :GYGFNLHSDK 1ihjA 27 :SFGICIVRGE T0340 26 :SRPGQYIRSVDPGSPAARSG 1ihjA 44 :KTTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5644 Number of alignments=1404 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGPQ 1ihjA 13 :ELIHMVTLDKTGK T0340 16 :GYGFNLHSDK 1ihjA 27 :SFGICIVRGE T0340 26 :SRPGQYIRSVDPGSPAARSG 1ihjA 44 :KTTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5648 Number of alignments=1405 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGPQ 1ihjA 13 :ELIHMVTLDKTGK T0340 16 :GYGFNLHSDK 1ihjA 27 :SFGICIVRGE T0340 29 :GQYIRSVDPGSPAARSG 1ihjA 47 :GIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5652 Number of alignments=1406 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGP 1ihjA 13 :ELIHMVTLDKTG T0340 15 :QGYGFNLHSDK 1ihjA 26 :KSFGICIVRGE T0340 27 :RP 1ihjA 43 :TK T0340 29 :GQYIRSVDPGSPAARSG 1ihjA 47 :GIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 5 number of extra gaps= 1 total=5657 Number of alignments=1407 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 5 :PRLCHLRKGPQ 1ihjA 15 :IHMVTLDKTGK T0340 16 :GYGFNLHSDK 1ihjA 27 :SFGICIVRGE T0340 26 :SRPGQYIRSVDPGSPAARSG 1ihjA 44 :KTTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5661 Number of alignments=1408 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0340 5 :PRLCHLRKGPQ 1ihjA 15 :IHMVTLDKTGK T0340 16 :GYGFNLHSDK 1ihjA 27 :SFGICIVRGE T0340 26 :SRPGQYIRSVDPGSPAARSG 1ihjA 44 :KTTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5665 Number of alignments=1409 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGPQ 1ihjA 13 :ELIHMVTLDKTGK T0340 16 :GYGFNLHSDK 1ihjA 27 :SFGICIVRGE T0340 29 :GQYIRSVDPGSPAARSG 1ihjA 47 :GIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5669 Number of alignments=1410 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGP 1ihjA 13 :ELIHMVTLDKTG T0340 15 :QGYGFNLHSDK 1ihjA 26 :KSFGICIVRGE T0340 27 :RP 1ihjA 43 :TK T0340 29 :GQYIRSVDPGSPAARSG 1ihjA 47 :GIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 5 number of extra gaps= 1 total=5674 Number of alignments=1411 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGPQ 1ihjA 13 :ELIHMVTLDKTGK T0340 16 :GYGFNLHSDKS 1ihjA 27 :SFGICIVRGEV T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5678 Number of alignments=1412 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGPQ 1ihjA 13 :ELIHMVTLDKTGK T0340 16 :GYGFNLHSDKS 1ihjA 27 :SFGICIVRGEV T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5682 Number of alignments=1413 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGPQ 1ihjA 13 :ELIHMVTLDKTGK T0340 16 :GYGFNLHSDKS 1ihjA 27 :SFGICIVRGEV T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5686 Number of alignments=1414 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)D24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGP 1ihjA 13 :ELIHMVTLDKTG T0340 15 :QGYGFNLHS 1ihjA 26 :KSFGICIVR T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=5690 Number of alignments=1415 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0340 5 :PRLCHLRKGPQ 1ihjA 15 :IHMVTLDKTGK T0340 16 :GYGFNLHSDKS 1ihjA 27 :SFGICIVRGEV T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=5694 Number of alignments=1416 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0340 6 :RLCHLRKGPQ 1ihjA 16 :HMVTLDKTGK T0340 16 :GYGFNLHSDKS 1ihjA 27 :SFGICIVRGEV T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=5698 Number of alignments=1417 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGPQ 1ihjA 13 :ELIHMVTLDKTGK T0340 16 :GYGFNLHSDKS 1ihjA 27 :SFGICIVRGEV T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5702 Number of alignments=1418 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)D24 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ihjA)P41 Warning: unaligning (T0340)K25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)P41 Warning: unaligning (T0340)S26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ihjA)N42 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGP 1ihjA 13 :ELIHMVTLDKTG T0340 15 :QGYGFNLHS 1ihjA 26 :KSFGICIVR T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 1 total=5706 Number of alignments=1419 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 4 :RPRLCHLRKGPQGYGFNLHSDKS 1ihjA 13 :ELIHMVTLDKTGKKSFGICIVRG T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 3 number of extra gaps= 0 total=5709 Number of alignments=1420 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)L3 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 4 :RPRLCHL 1ihjA 13 :ELIHMVT T0340 11 :RKGPQGYGFNLHSDKS 1ihjA 22 :KTGKKSFGICIVRGEV T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5713 Number of alignments=1421 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLR 1ihjA 13 :ELIHMVTLD T0340 12 :KGPQGYGFNLHSDKS 1ihjA 23 :TGKKSFGICIVRGEV T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5717 Number of alignments=1422 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGP 1ihjA 13 :ELIHMVTLDKTG T0340 15 :QGYGFNLHSDKS 1ihjA 26 :KSFGICIVRGEV T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5721 Number of alignments=1423 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0340 11 :RKGPQGYGFNLHSDKS 1ihjA 22 :KTGKKSFGICIVRGEV T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=5724 Number of alignments=1424 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set T0340 10 :LRKGPQGYGFNLHSDKS 1ihjA 21 :DKTGKKSFGICIVRGEV T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELE Number of specific fragments extracted= 3 number of extra gaps= 0 total=5727 Number of alignments=1425 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLR 1ihjA 13 :ELIHMVTLD T0340 12 :KGPQGYGFNLHSDKS 1ihjA 23 :TGKKSFGICIVRGEV T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5731 Number of alignments=1426 # 1ihjA read from 1ihjA/merged-a2m # found chain 1ihjA in training set Warning: unaligning (T0340)M2 because first residue in template chain is (1ihjA)G12 Warning: unaligning (T0340)P86 because last residue in template chain is (1ihjA)F105 T0340 3 :LRPRLCHLRKGP 1ihjA 13 :ELIHMVTLDKTG T0340 15 :QGYGFNLHSDKS 1ihjA 26 :KSFGICIVRGEV T0340 27 :RPGQYIRSVDPGSPAARSG 1ihjA 45 :TTGIFIKGIVPDSPAHLCG T0340 46 :LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 1ihjA 65 :LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT Number of specific fragments extracted= 4 number of extra gaps= 0 total=5735 Number of alignments=1427 # command:NUMB_ALIGNS: 1427 RES2ATOM 0 2 RES2ATOM 1 8 RES2ATOM 2 16 RES2ATOM 3 24 RES2ATOM 4 35 RES2ATOM 5 42 RES2ATOM 6 53 RES2ATOM 7 61 RES2ATOM 8 67 RES2ATOM 9 77 RES2ATOM 10 85 RES2ATOM 11 96 RES2ATOM 13 109 RES2ATOM 14 116 RES2ATOM 16 129 RES2ATOM 18 145 RES2ATOM 19 156 RES2ATOM 20 164 RES2ATOM 21 172 RES2ATOM 22 182 RES2ATOM 23 188 RES2ATOM 24 196 RES2ATOM 25 205 RES2ATOM 26 211 RES2ATOM 27 222 RES2ATOM 29 233 RES2ATOM 30 242 RES2ATOM 31 254 RES2ATOM 32 262 RES2ATOM 33 273 RES2ATOM 34 279 RES2ATOM 35 286 RES2ATOM 36 294 RES2ATOM 38 305 RES2ATOM 39 311 RES2ATOM 40 318 RES2ATOM 41 323 RES2ATOM 42 328 RES2ATOM 43 339 RES2ATOM 45 349 RES2ATOM 46 357 RES2ATOM 47 368 RES2ATOM 48 373 RES2ATOM 49 382 RES2ATOM 50 390 RES2ATOM 51 401 RES2ATOM 52 409 RES2ATOM 53 417 RES2ATOM 54 426 RES2ATOM 55 433 RES2ATOM 57 445 RES2ATOM 58 454 RES2ATOM 59 462 RES2ATOM 60 469 RES2ATOM 62 482 RES2ATOM 63 490 RES2ATOM 64 501 RES2ATOM 65 511 RES2ATOM 66 516 RES2ATOM 67 525 RES2ATOM 68 532 RES2ATOM 69 539 RES2ATOM 70 544 RES2ATOM 71 550 RES2ATOM 72 558 RES2ATOM 73 567 RES2ATOM 74 572 RES2ATOM 75 583 RES2ATOM 76 592 RES2ATOM 77 600 RES2ATOM 78 609 RES2ATOM 79 614 RES2ATOM 80 625 RES2ATOM 81 633 RES2ATOM 82 641 RES2ATOM 83 648 RES2ATOM 85 659 RES2ATOM 86 666 RES2ATOM 87 672 RES2ATOM 88 679 RES2ATOM 89 690 Constraint 255 369 4.5329 5.6661 11.3323 4831.0103 Constraint 255 374 5.4403 6.8004 13.6008 4826.4951 Constraint 280 369 5.0283 6.2853 12.5707 4824.5444 Constraint 255 402 5.4407 6.8009 13.6018 4806.2188 Constraint 255 383 3.7629 4.7036 9.4072 4793.3086 Constraint 280 350 4.8362 6.0452 12.0904 4764.6851 Constraint 255 350 4.8612 6.0764 12.1529 4761.8223 Constraint 255 358 5.5566 6.9457 13.8914 4740.6372 Constraint 274 369 4.9207 6.1508 12.3016 4732.7427 Constraint 243 391 4.4272 5.5340 11.0681 4715.6069 Constraint 243 374 5.3189 6.6487 13.2973 4712.6392 Constraint 263 369 5.1711 6.4639 12.9279 4700.1465 Constraint 427 545 4.2036 5.2545 10.5090 4686.2847 Constraint 427 551 5.0279 6.2849 12.5698 4671.4180 Constraint 243 383 5.4975 6.8719 13.7438 4633.9248 Constraint 243 402 5.7694 7.2118 14.4236 4594.7197 Constraint 234 402 3.6948 4.6186 9.2371 4586.7715 Constraint 434 615 4.4023 5.5029 11.0057 4564.6758 Constraint 402 642 4.7760 5.9700 11.9401 4533.6353 Constraint 410 649 4.6523 5.8153 11.6306 4504.3652 Constraint 234 391 5.3982 6.7477 13.4954 4496.0615 Constraint 234 463 4.4110 5.5138 11.0276 4475.8638 Constraint 434 610 5.0690 6.3363 12.6725 4473.4160 Constraint 446 545 4.8808 6.1009 12.2019 4473.3481 Constraint 410 642 5.3401 6.6751 13.3502 4459.0884 Constraint 234 526 4.0963 5.1204 10.2407 4441.9316 Constraint 402 526 5.4859 6.8573 13.7147 4424.3335 Constraint 173 263 3.5063 4.3829 8.7659 4417.4214 Constraint 434 573 4.7705 5.9632 11.9263 4394.7417 Constraint 165 255 4.8205 6.0257 12.0514 4386.4580 Constraint 391 649 3.7541 4.6927 9.3854 4385.6865 Constraint 165 263 4.8967 6.1209 12.2417 4368.6606 Constraint 157 263 3.6811 4.6013 9.2027 4362.5693 Constraint 157 255 5.6607 7.0759 14.1517 4362.3042 Constraint 146 280 4.1516 5.1895 10.3789 4354.8115 Constraint 391 642 5.1104 6.3880 12.7760 4351.7695 Constraint 146 287 5.3844 6.7304 13.4609 4349.5889 Constraint 157 274 3.5583 4.4478 8.8957 4346.3223 Constraint 173 243 4.1299 5.1624 10.3248 4333.8110 Constraint 146 255 4.3185 5.3981 10.7962 4328.4741 Constraint 146 319 3.5226 4.4033 8.8066 4319.2744 Constraint 165 402 5.4238 6.7798 13.5596 4318.0303 Constraint 383 642 3.4959 4.3698 8.7397 4311.9844 Constraint 146 350 5.0684 6.3355 12.6709 4310.5693 Constraint 183 502 4.6638 5.8298 11.6595 4299.0376 Constraint 383 649 5.4140 6.7675 13.5350 4297.9263 Constraint 130 312 4.1640 5.2050 10.4100 4295.7554 Constraint 165 243 5.2411 6.5514 13.1027 4293.2617 Constraint 234 502 5.4656 6.8320 13.6639 4291.3535 Constraint 427 610 5.2772 6.5966 13.1931 4278.3354 Constraint 130 319 4.3039 5.3799 10.7598 4253.3076 Constraint 427 626 4.7262 5.9077 11.8154 4235.2100 Constraint 350 642 5.3774 6.7218 13.4436 4222.4873 Constraint 146 306 5.5606 6.9508 13.9016 4210.1382 Constraint 418 634 3.3207 4.1508 8.3017 4193.7134 Constraint 418 626 5.6078 7.0098 14.0195 4151.0962 Constraint 165 234 4.2592 5.3240 10.6479 4149.9219 Constraint 427 615 5.8247 7.2809 14.5619 4149.7544 Constraint 280 358 5.4592 6.8240 13.6480 4130.5342 Constraint 130 306 5.4071 6.7589 13.5178 4113.2358 Constraint 402 626 4.8277 6.0346 12.0691 4062.3621 Constraint 146 274 5.3225 6.6531 13.3062 4059.5405 Constraint 78 610 4.0348 5.0436 10.0871 4024.2278 Constraint 68 615 4.1227 5.1533 10.3067 4017.2375 Constraint 410 634 3.8050 4.7562 9.5124 4015.7432 Constraint 165 526 5.0569 6.3212 12.6423 3953.7546 Constraint 255 391 6.2191 7.7739 15.5477 3949.2749 Constraint 78 312 4.0834 5.1043 10.2085 3933.1245 Constraint 62 615 5.6841 7.1051 14.2102 3927.5217 Constraint 402 634 5.9347 7.4184 14.8368 3916.2507 Constraint 68 610 5.7334 7.1668 14.3335 3903.1809 Constraint 130 610 5.0519 6.3149 12.6297 3864.2053 Constraint 78 340 4.6591 5.8239 11.6478 3818.9553 Constraint 78 601 5.5825 6.9781 13.9561 3814.1917 Constraint 62 642 5.0141 6.2676 12.5352 3796.5278 Constraint 43 642 4.5139 5.6423 11.2847 3788.6138 Constraint 97 312 4.6602 5.8252 11.6505 3785.7969 Constraint 78 319 5.0022 6.2528 12.5056 3764.7349 Constraint 54 615 5.0996 6.3745 12.7491 3756.9238 Constraint 62 350 4.7856 5.9821 11.9641 3741.4441 Constraint 86 601 4.4107 5.5134 11.0267 3738.5447 Constraint 165 533 5.5982 6.9977 13.9954 3722.2649 Constraint 463 545 5.4259 6.7823 13.5646 3692.8455 Constraint 68 601 5.0034 6.2543 12.5085 3680.3208 Constraint 234 483 5.4110 6.7638 13.5276 3662.4912 Constraint 165 502 5.5526 6.9408 13.8816 3653.1711 Constraint 427 573 5.2592 6.5740 13.1479 3648.8342 Constraint 130 551 5.5138 6.8923 13.7845 3640.9336 Constraint 427 526 5.4811 6.8514 13.7029 3632.7522 Constraint 36 649 4.3086 5.3857 10.7714 3597.2166 Constraint 62 626 4.0376 5.0470 10.0941 3567.0713 Constraint 97 593 4.7902 5.9878 11.9755 3555.3647 Constraint 86 312 4.9005 6.1257 12.2513 3528.0605 Constraint 54 634 4.4007 5.5009 11.0018 3526.7512 Constraint 43 634 5.7868 7.2335 14.4670 3508.0742 Constraint 36 642 5.6354 7.0442 14.0884 3505.6633 Constraint 36 410 5.5013 6.8767 13.7533 3457.6787 Constraint 86 593 5.0875 6.3594 12.7187 3455.0503 Constraint 350 626 5.8240 7.2800 14.5600 3438.7312 Constraint 255 642 5.9764 7.4705 14.9410 3431.4138 Constraint 54 626 5.7347 7.1684 14.3368 3424.5281 Constraint 78 626 5.4794 6.8492 13.6984 3353.1016 Constraint 165 551 5.9447 7.4309 14.8618 3348.8950 Constraint 62 340 4.6098 5.7623 11.5245 3347.0002 Constraint 97 610 5.3230 6.6537 13.3075 3329.0120 Constraint 427 634 6.1966 7.7458 15.4915 3313.1301 Constraint 78 615 5.9805 7.4756 14.9512 3296.4619 Constraint 255 319 6.1458 7.6822 15.3645 3249.9221 Constraint 146 263 6.1772 7.7215 15.4431 3228.7234 Constraint 36 634 4.9350 6.1687 12.3375 3189.9573 Constraint 68 626 5.9907 7.4884 14.9768 3019.1768 Constraint 374 660 4.4376 5.5470 11.0940 3009.9775 Constraint 189 502 3.5667 4.4584 8.9168 2950.4214 Constraint 434 545 5.5254 6.9067 13.8135 2810.7148 Constraint 173 502 5.7819 7.2274 14.4548 2748.8101 Constraint 173 255 6.0821 7.6026 15.2052 2744.7964 Constraint 97 601 5.7317 7.1646 14.3293 2668.4817 Constraint 86 610 5.7839 7.2299 14.4598 2661.2861 Constraint 68 340 5.4503 6.8128 13.6256 2534.0078 Constraint 383 660 5.3326 6.6657 13.3314 2477.1218 Constraint 157 280 6.1138 7.6423 15.2845 2422.9729 Constraint 62 634 6.0114 7.5142 15.0285 2414.6892 Constraint 157 287 5.9668 7.4585 14.9170 2379.2119 Constraint 43 649 5.9184 7.3980 14.7960 2356.2708 Constraint 189 491 4.2169 5.2712 10.5424 2338.3677 Constraint 391 660 4.9986 6.2483 12.4966 2237.9338 Constraint 418 615 6.1635 7.7043 15.4086 2207.5317 Constraint 183 526 5.6950 7.1188 14.2375 2191.1030 Constraint 78 350 6.0271 7.5339 15.0677 2162.9463 Constraint 189 526 4.7274 5.9093 11.8186 2144.8782 Constraint 54 642 5.9315 7.4144 14.8289 2122.5964 Constraint 189 483 4.9495 6.1869 12.3737 2050.5793 Constraint 17 649 5.1890 6.4863 12.9725 2000.0051 Constraint 197 491 4.4843 5.6054 11.2108 1950.8253 Constraint 25 649 5.4982 6.8727 13.7455 1920.3398 Constraint 117 312 5.1861 6.4827 12.9654 1901.3457 Constraint 97 573 5.5673 6.9592 13.9183 1879.0763 Constraint 223 470 5.1169 6.3962 12.7924 1851.9333 Constraint 189 512 5.9582 7.4478 14.8955 1818.3225 Constraint 97 584 5.5649 6.9561 13.9122 1778.7678 Constraint 197 502 5.4476 6.8095 13.6190 1771.3199 Constraint 189 517 5.8441 7.3051 14.6102 1717.2645 Constraint 434 584 5.5943 6.9929 13.9858 1628.6862 Constraint 402 551 6.2169 7.7712 15.5423 1411.3759 Constraint 197 483 5.3295 6.6618 13.3236 1353.0072 Constraint 146 324 6.1907 7.7383 15.4767 1352.4297 Constraint 206 491 4.8017 6.0021 12.0042 1320.6680 Constraint 212 470 5.5304 6.9131 13.8261 1292.0544 Constraint 117 306 4.7098 5.8872 11.7745 1253.4808 Constraint 62 319 6.0602 7.5753 15.1505 1248.4872 Constraint 110 593 5.4570 6.8212 13.6425 1176.4823 Constraint 189 391 5.5965 6.9957 13.9914 1028.0803 Constraint 17 660 5.1178 6.3973 12.7945 951.7764 Constraint 434 626 5.5702 6.9627 13.9255 945.8929 Constraint 243 660 5.7825 7.2281 14.4563 944.4932 Constraint 358 660 5.3241 6.6551 13.3102 932.2259 Constraint 434 601 6.0645 7.5806 15.1612 894.9398 Constraint 43 383 6.1771 7.7213 15.4426 874.4692 Constraint 206 502 5.0856 6.3570 12.7140 873.4075 Constraint 183 391 6.2961 7.8701 15.7403 863.8414 Constraint 234 470 5.8978 7.3723 14.7445 843.0440 Constraint 78 329 6.1513 7.6891 15.3782 809.9418 Constraint 234 410 6.1027 7.6284 15.2568 739.4119 Constraint 86 340 5.8053 7.2567 14.5133 736.6086 Constraint 212 483 5.7891 7.2364 14.4729 719.8314 Constraint 17 667 5.7698 7.2123 14.4246 707.6597 Constraint 130 573 6.0978 7.6222 15.2445 707.2509 Constraint 117 287 5.7214 7.1518 14.3036 664.8218 Constraint 410 626 6.2970 7.8713 15.7426 648.5877 Constraint 434 551 5.7688 7.2110 14.4220 636.9768 Constraint 183 491 5.6982 7.1228 14.2455 636.6157 Constraint 243 369 6.1030 7.6288 15.2575 634.0624 Constraint 402 649 6.0095 7.5119 15.0238 621.4257 Constraint 117 559 5.2531 6.5663 13.1327 621.3404 Constraint 312 610 6.2308 7.7885 15.5769 611.6185 Constraint 369 660 5.9112 7.3890 14.7781 610.1029 Constraint 86 329 5.9668 7.4585 14.9170 590.6133 Constraint 374 667 4.7428 5.9285 11.8571 581.4811 Constraint 434 568 5.8310 7.2888 14.5775 560.4989 Constraint 97 306 6.1911 7.7389 15.4777 551.5828 Constraint 54 418 6.1766 7.7208 15.4415 528.1099 Constraint 391 470 6.1789 7.7237 15.4473 519.1481 Constraint 212 391 5.9697 7.4621 14.9241 516.8024 Constraint 383 626 6.2746 7.8433 15.6865 507.0319 Constraint 146 312 5.7384 7.1730 14.3460 489.6349 Constraint 223 491 5.8282 7.2852 14.5705 478.9037 Constraint 25 667 5.5598 6.9497 13.8994 478.5559 Constraint 212 502 4.7367 5.9209 11.8418 465.7230 Constraint 340 626 6.0718 7.5897 15.1794 459.3227 Constraint 25 660 5.6065 7.0082 14.0163 456.1360 Constraint 223 463 5.3524 6.6905 13.3810 448.9301 Constraint 223 410 4.8469 6.0587 12.1173 435.8088 Constraint 446 573 5.7746 7.2183 14.4365 433.7722 Constraint 110 584 4.6629 5.8286 11.6572 413.8979 Constraint 212 491 4.9300 6.1625 12.3250 404.9309 Constraint 189 463 5.9118 7.3898 14.7796 404.0111 Constraint 206 512 5.8458 7.3073 14.6145 400.3764 Constraint 223 483 5.6017 7.0021 14.0043 396.2198 Constraint 551 626 5.9450 7.4312 14.8624 392.5456 Constraint 455 634 6.3032 7.8790 15.7580 387.4998 Constraint 78 146 5.9162 7.3952 14.7905 387.3544 Constraint 130 350 6.3098 7.8873 15.7745 384.4892 Constraint 223 391 4.0358 5.0447 10.0894 366.5463 Constraint 197 512 5.0083 6.2604 12.5207 350.4601 Constraint 117 551 5.7408 7.1759 14.3519 342.8875 Constraint 183 402 6.1331 7.6663 15.3326 336.6913 Constraint 402 470 6.2322 7.7903 15.5806 335.8919 Constraint 234 533 5.7965 7.2456 14.4912 332.8957 Constraint 223 402 5.2602 6.5752 13.1505 327.3507 Constraint 223 502 5.8233 7.2791 14.5582 319.5237 Constraint 43 358 6.0438 7.5548 15.1095 319.2103 Constraint 319 626 5.9037 7.3796 14.7592 317.0569 Constraint 358 642 5.3282 6.6602 13.3204 302.4978 Constraint 173 274 5.8931 7.3663 14.7326 299.3253 Constraint 234 427 6.2758 7.8448 15.6895 298.9962 Constraint 110 312 5.3341 6.6676 13.3351 280.4319 Constraint 463 626 6.0318 7.5397 15.0794 278.3862 Constraint 62 610 5.6033 7.0041 14.0082 271.8362 Constraint 234 491 5.8318 7.2897 14.5795 270.3419 Constraint 9 660 5.7280 7.1599 14.3199 264.4576 Constraint 68 350 5.5590 6.9488 13.8975 262.8215 Constraint 117 573 5.2063 6.5079 13.0159 262.4959 Constraint 183 533 5.9666 7.4582 14.9165 260.8281 Constraint 183 263 5.6702 7.0878 14.1755 259.3379 Constraint 68 319 5.3090 6.6363 13.2725 253.0560 Constraint 3 660 4.6036 5.7545 11.5090 251.2752 Constraint 68 642 5.0663 6.3329 12.6657 250.5228 Constraint 68 634 5.5073 6.8841 13.7681 250.1374 Constraint 263 374 5.7951 7.2439 14.4878 247.1719 Constraint 234 551 5.7177 7.1471 14.2941 243.6890 Constraint 86 626 5.5494 6.9368 13.8736 243.6400 Constraint 206 391 5.4557 6.8196 13.6393 241.5275 Constraint 86 615 5.6202 7.0253 14.0506 238.5943 Constraint 197 470 4.8482 6.0602 12.1205 232.8563 Constraint 223 649 5.8430 7.3037 14.6075 230.9984 Constraint 62 383 6.1465 7.6831 15.3663 228.9046 Constraint 130 287 6.1283 7.6604 15.3208 220.0099 Constraint 86 584 6.0379 7.5473 15.0947 216.3950 Constraint 189 263 5.7251 7.1564 14.3129 214.0545 Constraint 130 626 5.5696 6.9620 13.9241 213.1502 Constraint 97 329 6.3925 7.9907 15.9814 211.4184 Constraint 36 418 5.8390 7.2987 14.5975 208.8508 Constraint 374 673 5.7337 7.1671 14.3342 207.0316 Constraint 117 584 5.3610 6.7012 13.4024 203.5332 Constraint 86 319 5.1359 6.4198 12.8397 193.6584 Constraint 418 642 4.8571 6.0714 12.1428 187.6315 Constraint 189 533 6.1047 7.6308 15.2617 181.8035 Constraint 463 551 6.3262 7.9077 15.8154 181.1188 Constraint 374 680 5.4846 6.8557 13.7114 178.7753 Constraint 434 593 6.1178 7.6473 15.2946 178.3217 Constraint 189 402 4.4506 5.5633 11.1266 174.8854 Constraint 146 551 5.4609 6.8261 13.6521 174.5101 Constraint 234 517 5.9765 7.4706 14.9413 173.4138 Constraint 358 667 4.8834 6.1043 12.2085 170.9126 Constraint 463 634 6.0519 7.5649 15.1298 170.3097 Constraint 157 369 5.6846 7.1058 14.2115 170.2806 Constraint 36 660 5.0090 6.2613 12.5226 169.9578 Constraint 146 626 6.2855 7.8569 15.7138 169.1586 Constraint 43 350 5.8594 7.3242 14.6485 168.0516 Constraint 146 402 6.0253 7.5316 15.0633 166.0012 Constraint 206 470 5.1502 6.4378 12.8756 159.4678 Constraint 54 649 5.2013 6.5016 13.0032 159.1593 Constraint 391 680 5.5234 6.9043 13.8085 158.5627 Constraint 3 667 5.4184 6.7730 13.5460 157.3850 Constraint 358 680 5.5469 6.9336 13.8672 157.2175 Constraint 110 306 5.3395 6.6743 13.3487 154.8702 Constraint 97 319 6.0447 7.5558 15.1116 148.6006 Constraint 446 526 4.2741 5.3427 10.6854 146.4862 Constraint 418 649 4.3439 5.4299 10.8599 145.7138 Constraint 43 626 5.5785 6.9731 13.9461 144.4343 Constraint 434 634 4.9884 6.2355 12.4709 140.9309 Constraint 130 584 4.8427 6.0534 12.1067 139.4395 Constraint 43 410 6.0479 7.5599 15.1198 136.8558 Constraint 68 312 4.2275 5.2844 10.5688 136.8217 Constraint 110 573 5.5179 6.8973 13.7947 135.8712 Constraint 427 642 5.1360 6.4200 12.8400 132.6534 Constraint 25 642 5.4749 6.8436 13.6872 129.9690 Constraint 43 615 5.2442 6.5552 13.1105 125.9229 Constraint 86 350 5.6424 7.0530 14.1060 124.4763 Constraint 374 691 3.8020 4.7525 9.5050 121.7872 Constraint 455 526 6.0719 7.5899 15.1799 121.1238 Constraint 446 551 4.4962 5.6202 11.2405 121.1238 Constraint 183 463 4.4211 5.5264 11.0528 119.3817 Constraint 165 463 5.3797 6.7246 13.4492 119.3817 Constraint 212 463 4.6946 5.8683 11.7366 118.8647 Constraint 197 463 5.1423 6.4279 12.8558 117.7953 Constraint 212 526 5.4638 6.8298 13.6596 117.1226 Constraint 54 350 5.1495 6.4368 12.8736 113.7344 Constraint 97 615 5.2264 6.5331 13.0661 112.8238 Constraint 78 593 4.9544 6.1930 12.3860 112.8127 Constraint 97 551 6.0535 7.5668 15.1337 112.1877 Constraint 369 691 5.3195 6.6493 13.2987 108.8696 Constraint 197 517 6.2558 7.8197 15.6394 107.0385 Constraint 97 340 6.0230 7.5287 15.0574 106.1956 Constraint 287 350 6.2063 7.7578 15.5157 104.1204 Constraint 157 533 5.2821 6.6027 13.2053 102.6370 Constraint 117 593 5.7129 7.1412 14.2823 102.5632 Constraint 110 559 5.0768 6.3460 12.6919 101.7212 Constraint 243 680 5.6596 7.0745 14.1490 99.5077 Constraint 9 649 4.8001 6.0002 12.0003 99.4981 Constraint 358 673 5.2268 6.5335 13.0670 99.2121 Constraint 391 691 6.1088 7.6360 15.2719 95.8245 Constraint 427 649 6.0690 7.5862 15.1725 95.3796 Constraint 391 667 5.0977 6.3721 12.7443 94.3465 Constraint 243 691 3.9706 4.9632 9.9264 92.5947 Constraint 212 410 5.5083 6.8854 13.7708 92.1110 Constraint 36 667 5.3999 6.7499 13.4998 89.5004 Constraint 463 533 5.9103 7.3878 14.7757 88.5203 Constraint 54 340 4.3805 5.4757 10.9514 88.2237 Constraint 173 691 6.1822 7.7277 15.4554 87.5541 Constraint 183 512 6.2905 7.8632 15.7263 85.5841 Constraint 146 369 5.2679 6.5849 13.1697 85.4770 Constraint 86 573 5.2015 6.5019 13.0037 85.0449 Constraint 223 455 5.1280 6.4100 12.8200 84.9919 Constraint 197 391 4.2141 5.2676 10.5351 84.1438 Constraint 146 295 6.3788 7.9735 15.9469 82.2922 Constraint 25 410 5.9404 7.4255 14.8511 82.1140 Constraint 62 601 5.2137 6.5171 13.0342 82.0134 Constraint 165 287 5.6011 7.0014 14.0027 81.2346 Constraint 157 319 3.8090 4.7612 9.5224 81.2346 Constraint 157 306 4.6579 5.8224 11.6448 81.2346 Constraint 3 358 6.3370 7.9212 15.8424 81.0362 Constraint 383 691 6.3375 7.9219 15.8438 80.7529 Constraint 223 680 6.0240 7.5300 15.0601 80.4609 Constraint 17 673 5.2775 6.5969 13.1938 80.0279 Constraint 369 680 4.0458 5.0572 10.1144 76.9376 Constraint 173 526 5.9258 7.4073 14.8146 76.6908 Constraint 263 691 6.2172 7.7716 15.5431 76.3075 Constraint 25 634 5.3724 6.7154 13.4309 75.9459 Constraint 197 402 5.5702 6.9627 13.9255 74.5663 Constraint 9 673 4.6667 5.8333 11.6667 73.7116 Constraint 446 533 6.1734 7.7167 15.4334 72.4461 Constraint 43 660 5.9051 7.3814 14.7629 72.4217 Constraint 78 634 5.0129 6.2662 12.5323 72.2117 Constraint 110 234 4.0166 5.0207 10.0414 71.9018 Constraint 212 649 4.4095 5.5119 11.0238 71.6144 Constraint 427 517 5.4406 6.8008 13.6016 71.5990 Constraint 110 287 5.6553 7.0692 14.1383 71.4658 Constraint 117 568 5.1199 6.3999 12.7998 71.3660 Constraint 78 642 5.3653 6.7066 13.4132 71.2791 Constraint 86 306 4.7975 5.9969 11.9938 70.8425 Constraint 130 559 5.5609 6.9511 13.9022 70.3317 Constraint 455 649 6.2898 7.8622 15.7245 69.3784 Constraint 130 642 6.3805 7.9756 15.9512 69.3784 Constraint 9 667 4.6411 5.8014 11.6028 69.3409 Constraint 383 667 5.1491 6.4364 12.8727 68.8781 Constraint 350 649 5.2716 6.5896 13.1791 68.6902 Constraint 78 306 5.0087 6.2608 12.5217 68.5893 Constraint 206 483 5.1459 6.4324 12.8648 68.3285 Constraint 165 280 5.6064 7.0080 14.0159 68.1905 Constraint 17 391 4.8572 6.0715 12.1429 67.2310 Constraint 110 601 4.3425 5.4281 10.8563 66.7236 Constraint 206 463 4.8718 6.0898 12.1796 66.3611 Constraint 62 312 4.6904 5.8630 11.7261 65.7372 Constraint 165 427 6.2359 7.7949 15.5898 65.3767 Constraint 130 427 6.2382 7.7977 15.5954 65.3767 Constraint 3 673 4.4368 5.5460 11.0920 64.7506 Constraint 402 483 6.3400 7.9249 15.8499 63.8595 Constraint 340 610 6.2584 7.8230 15.6461 63.8595 Constraint 410 660 4.1801 5.2251 10.4502 63.3794 Constraint 62 130 5.0015 6.2519 12.5038 63.3600 Constraint 369 673 6.3584 7.9480 15.8959 62.4834 Constraint 183 470 5.3756 6.7195 13.4390 62.3367 Constraint 146 358 6.3136 7.8919 15.7839 62.3367 Constraint 130 295 6.3471 7.9338 15.8677 62.3367 Constraint 165 274 4.3413 5.4266 10.8532 62.2937 Constraint 446 540 6.0847 7.6059 15.2118 61.6890 Constraint 86 551 5.9812 7.4765 14.9529 60.7815 Constraint 78 573 6.2359 7.7949 15.5899 60.6179 Constraint 97 243 4.2684 5.3355 10.6711 60.5114 Constraint 97 234 5.6162 7.0203 14.0406 60.5114 Constraint 86 263 4.6645 5.8307 11.6613 60.5114 Constraint 86 255 5.0641 6.3301 12.6602 60.5114 Constraint 110 329 5.6803 7.1004 14.2009 59.2826 Constraint 68 434 5.7332 7.1664 14.3329 59.1990 Constraint 110 568 5.8870 7.3588 14.7175 58.7363 Constraint 189 470 6.1942 7.7427 15.4854 58.5663 Constraint 391 463 6.2737 7.8422 15.6843 57.7037 Constraint 25 680 5.3451 6.6814 13.3629 57.4960 Constraint 255 649 5.9415 7.4269 14.8538 57.3260 Constraint 130 434 6.0702 7.5877 15.1755 57.0450 Constraint 97 434 5.1574 6.4468 12.8936 57.0450 Constraint 369 667 5.7261 7.1576 14.3152 56.9272 Constraint 206 526 5.4899 6.8624 13.7248 56.8906 Constraint 183 255 5.2721 6.5901 13.1802 56.5970 Constraint 97 263 3.6900 4.6125 9.2251 56.2872 Constraint 97 255 5.9388 7.4235 14.8469 56.2872 Constraint 62 418 6.0978 7.6223 15.2445 55.7894 Constraint 97 559 5.9073 7.3842 14.7683 55.4312 Constraint 86 324 5.7965 7.2457 14.4913 55.3029 Constraint 78 434 5.3418 6.6773 13.3546 55.3029 Constraint 97 626 5.1625 6.4531 12.9062 54.0612 Constraint 25 673 4.8977 6.1222 12.2443 53.5542 Constraint 17 642 5.1398 6.4248 12.8496 52.9456 Constraint 427 533 4.2244 5.2805 10.5610 52.8667 Constraint 427 540 5.4241 6.7801 13.5602 52.8038 Constraint 197 383 5.6114 7.0143 14.0286 52.7992 Constraint 197 374 5.6613 7.0766 14.1531 52.7992 Constraint 62 649 5.4229 6.7786 13.5573 51.7176 Constraint 97 502 5.9692 7.4615 14.9229 51.3695 Constraint 86 502 5.7993 7.2491 14.4982 51.3695 Constraint 86 243 5.1397 6.4247 12.8493 51.3695 Constraint 86 234 4.5265 5.6581 11.3161 51.3695 Constraint 78 263 4.1007 5.1259 10.2518 51.0823 Constraint 78 255 5.3241 6.6551 13.3103 51.0823 Constraint 110 526 4.4004 5.5004 11.0009 50.7808 Constraint 110 502 3.5384 4.4230 8.8459 50.7808 Constraint 410 680 6.1506 7.6883 15.3766 50.2146 Constraint 78 427 5.8282 7.2853 14.5706 49.7925 Constraint 130 615 4.7764 5.9705 11.9409 49.3786 Constraint 54 319 5.4958 6.8697 13.7394 48.8359 Constraint 545 615 5.1204 6.4005 12.8010 48.0705 Constraint 86 533 5.4062 6.7577 13.5154 47.1453 Constraint 86 526 5.0619 6.3273 12.6546 47.1453 Constraint 86 402 5.1025 6.3782 12.7563 47.1453 Constraint 78 274 4.0534 5.0668 10.1336 46.8581 Constraint 62 427 6.3681 7.9601 15.9202 46.7525 Constraint 62 402 6.3564 7.9456 15.8911 46.7525 Constraint 54 610 5.4687 6.8358 13.6716 46.3319 Constraint 183 483 5.1185 6.3981 12.7962 46.1834 Constraint 383 673 5.8912 7.3640 14.7280 45.2960 Constraint 43 512 5.0961 6.3701 12.7402 45.2179 Constraint 165 319 3.4749 4.3436 8.6872 43.9290 Constraint 165 306 4.1650 5.2062 10.4124 43.9290 Constraint 157 312 4.2371 5.2963 10.5926 43.9290 Constraint 234 512 4.0605 5.0756 10.1513 42.2700 Constraint 110 517 5.5656 6.9570 13.9140 41.6389 Constraint 110 512 6.3060 7.8825 15.7649 41.6389 Constraint 110 491 3.9991 4.9989 9.9978 41.6389 Constraint 110 483 4.1884 5.2355 10.4710 41.6389 Constraint 110 463 5.9010 7.3762 14.7524 41.6389 Constraint 319 634 5.8790 7.3487 14.6975 41.3319 Constraint 223 660 5.9133 7.3916 14.7832 41.2743 Constraint 243 667 5.9544 7.4430 14.8860 40.8832 Constraint 17 374 5.7913 7.2391 14.4782 40.4443 Constraint 197 526 5.2823 6.6029 13.2058 40.1296 Constraint 54 383 5.8998 7.3747 14.7495 39.8107 Constraint 434 533 5.1432 6.4290 12.8580 39.7229 Constraint 165 312 4.6232 5.7790 11.5579 39.2707 Constraint 427 512 5.2281 6.5352 13.0703 38.3570 Constraint 402 512 4.9560 6.1950 12.3900 38.3570 Constraint 17 212 5.1764 6.4705 12.9410 38.1943 Constraint 78 584 5.1079 6.3849 12.7698 38.0840 Constraint 68 593 5.5322 6.9153 13.8306 38.0840 Constraint 243 483 5.5587 6.9484 13.8967 37.9214 Constraint 173 402 5.2273 6.5341 13.0681 37.3056 Constraint 157 350 4.6458 5.8072 11.6144 37.3056 Constraint 68 306 5.3858 6.7322 13.4644 37.0823 Constraint 68 287 5.4991 6.8738 13.7477 37.0823 Constraint 68 280 4.5216 5.6520 11.3041 37.0823 Constraint 3 691 5.7316 7.1645 14.3290 36.8460 Constraint 68 274 5.4318 6.7898 13.5795 36.7356 Constraint 68 263 5.9911 7.4889 14.9777 36.7356 Constraint 68 255 4.4871 5.6088 11.2176 36.7356 Constraint 350 634 5.6880 7.1100 14.2200 36.2208 Constraint 9 680 5.4097 6.7621 13.5242 35.7631 Constraint 197 660 5.2610 6.5762 13.1525 35.6355 Constraint 206 410 5.5004 6.8755 13.7510 34.8693 Constraint 470 680 4.8692 6.0865 12.1730 34.8238 Constraint 9 691 5.2395 6.5494 13.0987 34.8118 Constraint 117 223 5.2066 6.5082 13.0164 34.4871 Constraint 78 559 5.8014 7.2517 14.5035 34.3534 Constraint 43 610 6.1200 7.6500 15.3001 33.7936 Constraint 68 649 5.7790 7.2237 14.4475 31.9807 Constraint 197 369 6.3610 7.9512 15.9024 31.9288 Constraint 117 601 5.3617 6.7021 13.4043 31.8602 Constraint 54 601 6.2655 7.8318 15.6637 31.6980 Constraint 17 680 5.1770 6.4713 12.9425 31.3903 Constraint 86 634 5.6848 7.1060 14.2119 31.3483 Constraint 36 383 6.3113 7.8891 15.7783 31.3237 Constraint 110 243 3.6598 4.5747 9.1495 30.2629 Constraint 110 223 6.0879 7.6099 15.2197 30.2629 Constraint 78 280 5.5775 6.9719 13.9438 29.9614 Constraint 43 340 5.9183 7.3978 14.7956 29.5694 Constraint 36 626 5.9884 7.4855 14.9711 29.5694 Constraint 36 615 5.2324 6.5405 13.0809 29.5694 Constraint 25 383 6.3435 7.9294 15.8587 29.5694 Constraint 17 634 4.8674 6.0842 12.1684 29.5694 Constraint 17 410 5.8281 7.2852 14.5703 29.5694 Constraint 551 634 6.0853 7.6066 15.2131 29.0686 Constraint 173 287 5.5460 6.9325 13.8649 28.8167 Constraint 130 634 5.8352 7.2941 14.5881 27.8480 Constraint 62 306 3.0411 3.8014 7.6028 27.6533 Constraint 280 340 4.8059 6.0073 12.0147 27.4257 Constraint 206 649 5.0876 6.3595 12.7189 26.2223 Constraint 540 610 5.9338 7.4172 14.8344 26.1836 Constraint 434 642 5.6421 7.0526 14.1052 26.0011 Constraint 36 540 6.1386 7.6732 15.3465 25.8388 Constraint 36 110 6.2123 7.7654 15.5308 25.8388 Constraint 130 212 6.1455 7.6819 15.3637 25.3452 Constraint 130 206 3.9126 4.8907 9.7815 25.3452 Constraint 117 212 5.1650 6.4562 12.9124 25.3452 Constraint 117 206 3.6117 4.5146 9.0292 25.3452 Constraint 3 649 5.7987 7.2484 14.4968 25.0570 Constraint 243 502 5.8627 7.3283 14.6567 24.9992 Constraint 165 350 5.3882 6.7352 13.4704 24.9881 Constraint 157 324 5.1303 6.4129 12.8257 24.9881 Constraint 157 295 6.2043 7.7554 15.5108 24.9881 Constraint 455 673 5.8134 7.2668 14.5335 24.4989 Constraint 62 329 6.0599 7.5749 15.1497 24.2272 Constraint 3 680 5.5427 6.9284 13.8568 24.1722 Constraint 43 418 5.8771 7.3463 14.6927 23.8715 Constraint 36 680 5.9746 7.4682 14.9365 23.8327 Constraint 255 691 6.3534 7.9418 15.8836 23.7755 Constraint 427 502 5.9720 7.4650 14.9299 23.7457 Constraint 173 280 4.1139 5.1423 10.2847 23.5991 Constraint 62 324 4.7491 5.9364 11.8727 23.0823 Constraint 62 287 3.6076 4.5095 9.0189 23.0823 Constraint 62 280 4.7876 5.9845 11.9691 23.0823 Constraint 340 634 5.0567 6.3208 12.6416 22.4067 Constraint 287 369 3.7489 4.6862 9.3723 22.2975 Constraint 157 243 5.1032 6.3791 12.7581 22.2948 Constraint 418 545 4.6132 5.7665 11.5331 22.1985 Constraint 146 502 5.4279 6.7849 13.5697 22.0613 Constraint 117 533 6.2352 7.7940 15.5880 22.0613 Constraint 157 551 5.3260 6.6574 13.3149 22.0032 Constraint 110 551 5.7552 7.1941 14.3881 21.6246 Constraint 402 545 5.6225 7.0281 14.0562 21.6162 Constraint 68 324 6.1100 7.6375 15.2750 21.4677 Constraint 25 691 5.3967 6.7459 13.4918 21.3886 Constraint 358 691 5.6195 7.0243 14.0486 21.3155 Constraint 110 391 5.9365 7.4206 14.8413 21.1210 Constraint 54 130 5.3933 6.7416 13.4833 20.6797 Constraint 183 551 5.6226 7.0282 14.0564 20.3299 Constraint 173 533 6.1962 7.7452 15.4904 20.3299 Constraint 146 615 5.1925 6.4907 12.9814 20.3299 Constraint 68 189 5.3600 6.7000 13.4000 19.9611 Constraint 173 391 5.9510 7.4387 14.8775 19.7993 Constraint 146 243 4.6553 5.8192 11.6384 19.4413 Constraint 312 649 4.6066 5.7582 11.5164 19.1277 Constraint 183 280 6.2188 7.7735 15.5470 18.9409 Constraint 183 274 3.6730 4.5912 9.1824 18.9409 Constraint 173 350 4.4955 5.6194 11.2388 18.9409 Constraint 173 324 6.1972 7.7465 15.4930 18.9409 Constraint 173 319 3.0949 3.8687 7.7373 18.9409 Constraint 173 312 6.3620 7.9524 15.9049 18.9409 Constraint 173 306 5.4339 6.7924 13.5847 18.9409 Constraint 165 324 5.2442 6.5552 13.1104 18.9409 Constraint 157 610 5.0063 6.2579 12.5158 18.9409 Constraint 146 559 5.9834 7.4793 14.9585 18.9409 Constraint 117 610 6.3963 7.9953 15.9907 18.9409 Constraint 110 340 6.1085 7.6356 15.2712 18.9409 Constraint 86 642 5.0519 6.3149 12.6297 18.9409 Constraint 86 383 6.3555 7.9443 15.8886 18.9409 Constraint 68 383 5.9760 7.4700 14.9399 18.9409 Constraint 54 312 4.0546 5.0682 10.1364 18.8581 Constraint 54 306 4.7634 5.9543 11.9086 18.8581 Constraint 545 626 6.1207 7.6508 15.3016 18.4719 Constraint 540 642 4.5727 5.7159 11.4318 18.4719 Constraint 540 634 5.8564 7.3206 14.6411 18.4719 Constraint 540 626 4.0043 5.0054 10.0107 18.4719 Constraint 526 649 6.0038 7.5048 15.0095 18.4719 Constraint 526 642 4.0053 5.0066 10.0132 18.4719 Constraint 427 584 6.3380 7.9225 15.8450 18.4719 Constraint 410 559 4.8044 6.0055 12.0109 18.4719 Constraint 410 551 4.9625 6.2031 12.4062 18.4719 Constraint 391 568 5.6565 7.0707 14.1413 18.4719 Constraint 391 559 4.0047 5.0059 10.0118 18.4719 Constraint 383 568 4.5121 5.6402 11.2803 18.4719 Constraint 383 559 5.0413 6.3017 12.6034 18.4719 Constraint 374 573 6.0232 7.5291 15.0581 18.4719 Constraint 340 649 5.4566 6.8207 13.6414 18.4719 Constraint 340 642 3.8183 4.7729 9.5457 18.4719 Constraint 312 660 4.3669 5.4587 10.9174 18.4719 Constraint 183 374 5.0799 6.3499 12.6998 18.3778 Constraint 189 660 6.1495 7.6868 15.3736 18.2734 Constraint 68 329 6.2585 7.8232 15.6464 18.1617 Constraint 358 649 4.9048 6.1310 12.2619 17.9879 Constraint 43 146 5.0609 6.3262 12.6523 17.7778 Constraint 43 667 5.4962 6.8703 13.7405 17.5602 Constraint 97 295 4.9747 6.2184 12.4368 17.5322 Constraint 9 410 5.7604 7.2005 14.4011 17.0811 Constraint 212 660 4.9156 6.1444 12.2889 16.9377 Constraint 3 634 6.0145 7.5182 15.0364 16.8968 Constraint 78 165 6.0985 7.6231 15.2462 16.3913 Constraint 157 502 5.6290 7.0362 14.0724 16.1907 Constraint 146 634 6.3241 7.9051 15.8101 16.1492 Constraint 157 234 5.7223 7.1529 14.3058 15.9818 Constraint 130 280 4.8487 6.0609 12.1219 15.9818 Constraint 212 691 5.3226 6.6533 13.3066 15.7541 Constraint 189 691 3.8907 4.8633 9.7266 15.7541 Constraint 212 455 6.3672 7.9591 15.9181 15.7223 Constraint 86 165 5.8642 7.3302 14.6605 15.4835 Constraint 43 157 4.0912 5.1140 10.2279 15.4689 Constraint 62 157 4.3496 5.4370 10.8739 15.1273 Constraint 54 157 5.9383 7.4228 14.8456 15.0644 Constraint 206 402 4.5440 5.6800 11.3599 14.6880 Constraint 54 551 5.6802 7.1002 14.2005 14.6339 Constraint 43 312 5.8621 7.3277 14.6554 14.6339 Constraint 43 306 5.1848 6.4811 12.9621 14.6339 Constraint 446 517 5.7494 7.1868 14.3736 14.6272 Constraint 434 526 5.0963 6.3704 12.7407 14.5097 Constraint 312 642 4.3080 5.3850 10.7699 14.5097 Constraint 9 212 5.1398 6.4247 12.8494 14.3229 Constraint 62 410 6.1019 7.6273 15.2547 14.2056 Constraint 280 383 6.2475 7.8094 15.6188 13.8569 Constraint 540 615 5.0923 6.3654 12.7307 13.8539 Constraint 533 634 4.4933 5.6167 11.2333 13.8539 Constraint 533 626 6.2439 7.8049 15.6098 13.8539 Constraint 533 615 4.5083 5.6353 11.2707 13.8539 Constraint 526 634 5.4392 6.7989 13.5979 13.8539 Constraint 517 649 3.9760 4.9699 9.9399 13.8539 Constraint 517 642 5.7588 7.1985 14.3970 13.8539 Constraint 517 634 4.6449 5.8061 11.6123 13.8539 Constraint 512 649 5.3358 6.6697 13.3394 13.8539 Constraint 434 502 5.4968 6.8710 13.7420 13.8539 Constraint 418 540 6.2453 7.8066 15.6132 13.8539 Constraint 410 601 5.8647 7.3309 14.6618 13.8539 Constraint 410 545 4.3011 5.3763 10.7527 13.8539 Constraint 402 540 4.5329 5.6661 11.3322 13.8539 Constraint 391 551 4.8025 6.0032 12.0063 13.8539 Constraint 383 551 3.4674 4.3342 8.6685 13.8539 Constraint 374 568 5.4778 6.8473 13.6946 13.8539 Constraint 358 568 5.7060 7.1325 14.2650 13.8539 Constraint 350 551 5.6767 7.0958 14.1917 13.8539 Constraint 350 540 5.4868 6.8585 13.7171 13.8539 Constraint 340 540 5.9398 7.4248 14.8496 13.8539 Constraint 329 642 6.3814 7.9767 15.9535 13.8539 Constraint 319 642 4.5776 5.7220 11.4439 13.8539 Constraint 306 660 6.2434 7.8043 15.6086 13.8539 Constraint 255 551 6.1355 7.6693 15.3386 13.8539 Constraint 86 157 4.9200 6.1500 12.3001 13.8539 Constraint 130 502 5.0385 6.2982 12.5963 13.7128 Constraint 533 610 6.2055 7.7569 15.5137 13.6955 Constraint 418 660 6.0805 7.6006 15.2012 13.6362 Constraint 263 680 5.7352 7.1690 14.3380 13.3928 Constraint 183 680 5.8689 7.3361 14.6722 13.3928 Constraint 173 680 4.3756 5.4696 10.9391 13.3928 Constraint 62 146 5.2879 6.6098 13.2197 13.1079 Constraint 54 146 4.7346 5.9183 11.8365 13.1079 Constraint 319 649 5.3840 6.7300 13.4600 13.0869 Constraint 54 410 5.7766 7.2207 14.4414 13.0855 Constraint 146 329 6.3543 7.9429 15.8857 13.0440 Constraint 54 660 5.6046 7.0058 14.0116 13.0399 Constraint 197 649 4.2218 5.2773 10.5545 12.9748 Constraint 146 533 5.7317 7.1646 14.3292 12.9194 Constraint 146 526 4.9583 6.1978 12.3956 12.9194 Constraint 146 234 4.5129 5.6411 11.2821 12.9194 Constraint 130 402 6.3936 7.9920 15.9839 12.9194 Constraint 130 255 4.1437 5.1797 10.3593 12.9194 Constraint 78 512 5.1596 6.4495 12.8989 12.9194 Constraint 68 559 5.5843 6.9803 13.9607 12.9194 Constraint 68 540 6.0994 7.6242 15.2485 12.9194 Constraint 36 512 5.2158 6.5197 13.0395 12.9194 Constraint 25 540 6.1059 7.6324 15.2649 12.9194 Constraint 9 540 6.1024 7.6280 15.2560 12.9194 Constraint 9 512 5.0373 6.2966 12.5933 12.9194 Constraint 446 568 6.1430 7.6788 15.3575 12.6464 Constraint 36 391 5.3270 6.6587 13.3174 12.2412 Constraint 110 610 5.5707 6.9634 13.9269 12.2043 Constraint 173 551 6.2420 7.8026 15.6051 12.1321 Constraint 410 691 5.9835 7.4794 14.9587 11.9245 Constraint 43 173 4.6634 5.8292 11.6584 11.7962 Constraint 43 165 4.9377 6.1721 12.3443 11.7962 Constraint 86 434 6.0994 7.6242 15.2485 11.6881 Constraint 68 427 5.5171 6.8964 13.7927 11.6881 Constraint 189 287 6.1351 7.6689 15.3377 11.5449 Constraint 183 295 6.2039 7.7548 15.5097 11.5449 Constraint 97 183 4.5592 5.6990 11.3980 11.5449 Constraint 97 165 3.8419 4.8023 9.6046 11.5449 Constraint 86 183 5.1015 6.3769 12.7538 11.5449 Constraint 86 173 4.9112 6.1390 12.2779 11.5449 Constraint 78 197 5.9444 7.4305 14.8610 11.5449 Constraint 78 189 3.0901 3.8626 7.7252 11.5449 Constraint 78 183 3.1971 3.9964 7.9927 11.5449 Constraint 68 197 4.9509 6.1886 12.3772 11.5449 Constraint 62 197 5.8304 7.2880 14.5760 11.5449 Constraint 62 189 5.9032 7.3790 14.7579 11.5449 Constraint 212 402 4.0014 5.0018 10.0036 11.4378 Constraint 36 146 4.5265 5.6582 11.3163 11.2034 Constraint 36 350 5.9285 7.4106 14.8213 10.7779 Constraint 78 157 4.0955 5.1194 10.2388 10.7250 Constraint 68 157 5.5069 6.8836 13.7673 10.7250 Constraint 243 673 6.0820 7.6025 15.2050 10.7142 Constraint 223 673 4.0994 5.1243 10.2486 10.7142 Constraint 183 673 6.1651 7.7063 15.4126 10.7142 Constraint 62 295 6.2238 7.7797 15.5595 10.4097 Constraint 43 287 5.6788 7.0986 14.1971 10.4097 Constraint 383 680 4.9758 6.2197 12.4394 10.2098 Constraint 62 165 5.5365 6.9207 13.8413 9.9393 Constraint 130 526 6.0037 7.5046 15.0093 9.7825 Constraint 54 165 5.2699 6.5874 13.1747 9.7797 Constraint 62 512 5.0200 6.2750 12.5499 9.6895 Constraint 43 540 6.0424 7.5530 15.1060 9.6895 Constraint 43 502 6.1486 7.6857 15.3714 9.6895 Constraint 43 491 4.1798 5.2247 10.4495 9.6895 Constraint 312 667 4.2788 5.3485 10.6970 9.2359 Constraint 306 667 6.3367 7.9209 15.8418 9.2359 Constraint 62 206 4.0905 5.1131 10.2263 9.2359 Constraint 183 369 6.3136 7.8920 15.7840 9.1419 Constraint 130 512 6.1408 7.6760 15.3520 9.1419 Constraint 130 491 4.6029 5.7536 11.5072 9.1419 Constraint 117 526 3.8577 4.8222 9.6444 9.1419 Constraint 117 517 5.9122 7.3903 14.7805 9.1419 Constraint 117 512 6.0114 7.5142 15.0285 9.1419 Constraint 117 502 2.3816 2.9771 5.9541 9.1419 Constraint 117 491 4.5164 5.6454 11.2909 9.1419 Constraint 117 483 4.6052 5.7564 11.5129 9.1419 Constraint 117 234 4.3567 5.4459 10.8918 9.1419 Constraint 97 533 5.6529 7.0661 14.1323 9.1419 Constraint 97 526 5.4742 6.8428 13.6856 9.1419 Constraint 97 402 5.6587 7.0733 14.1467 9.1419 Constraint 97 350 5.8965 7.3706 14.7412 9.1419 Constraint 86 280 6.2832 7.8540 15.7079 9.1419 Constraint 86 274 3.2612 4.0765 8.1530 9.1419 Constraint 78 287 5.2842 6.6052 13.2104 9.1419 Constraint 312 634 5.8216 7.2770 14.5540 9.1248 Constraint 36 157 6.0577 7.5721 15.1441 8.8944 Constraint 68 146 5.2239 6.5299 13.0598 8.7056 Constraint 9 642 5.4906 6.8632 13.7265 8.6122 Constraint 9 634 4.5201 5.6502 11.3003 8.6122 Constraint 62 573 6.2146 7.7683 15.5366 8.5146 Constraint 36 374 5.8441 7.3051 14.6102 8.5146 Constraint 402 660 4.6297 5.7872 11.5744 8.4689 Constraint 350 660 4.7173 5.8966 11.7932 8.4689 Constraint 255 660 5.8443 7.3054 14.6108 8.4689 Constraint 17 383 6.3864 7.9829 15.9659 8.4689 Constraint 17 350 6.0005 7.5006 15.0012 8.4689 Constraint 455 642 6.1712 7.7140 15.4280 8.2052 Constraint 54 402 6.2428 7.8034 15.6069 8.1531 Constraint 626 691 5.5560 6.9450 13.8900 7.9814 Constraint 391 673 4.2315 5.2894 10.5787 7.8771 Constraint 255 667 6.2155 7.7694 15.5387 7.8771 Constraint 36 223 5.5634 6.9543 13.9085 7.8478 Constraint 274 358 5.8562 7.3203 14.6406 7.7954 Constraint 340 615 6.0343 7.5429 15.0857 7.5828 Constraint 434 540 4.3672 5.4590 10.9180 7.5198 Constraint 78 551 6.2417 7.8022 15.6043 7.3685 Constraint 206 660 6.1063 7.6329 15.2658 7.1997 Constraint 427 601 4.3661 5.4576 10.9152 6.9270 Constraint 402 615 4.4194 5.5243 11.0486 6.9270 Constraint 350 615 5.6343 7.0428 14.0857 6.9270 Constraint 189 374 6.3196 7.8995 15.7990 6.9270 Constraint 183 660 5.7251 7.1563 14.3127 6.9270 Constraint 130 243 6.0864 7.6080 15.2160 6.9270 Constraint 43 130 5.5653 6.9566 13.9133 6.9270 Constraint 36 130 5.2297 6.5372 13.0743 6.9270 Constraint 9 86 3.7346 4.6682 9.3365 6.9270 Constraint 165 374 4.7460 5.9326 11.8651 6.8799 Constraint 255 634 6.0307 7.5384 15.0768 6.5745 Constraint 78 243 4.8048 6.0060 12.0121 6.5332 Constraint 78 234 4.5947 5.7434 11.4869 6.5332 Constraint 62 263 5.7002 7.1253 14.2505 6.5332 Constraint 36 306 5.4331 6.7913 13.5826 6.5332 Constraint 36 287 5.2970 6.6213 13.2426 6.5332 Constraint 25 312 5.2569 6.5711 13.1423 6.5332 Constraint 36 673 4.4735 5.5918 11.1836 6.5190 Constraint 274 350 4.8602 6.0752 12.1504 6.4660 Constraint 117 189 4.0849 5.1062 10.2123 6.4597 Constraint 110 189 5.7395 7.1744 14.3488 6.4597 Constraint 243 358 5.2826 6.6033 13.2065 6.2571 Constraint 243 350 4.5430 5.6788 11.3575 6.2571 Constraint 615 691 5.3082 6.6352 13.2704 6.0249 Constraint 3 97 4.9330 6.1662 12.3325 5.9296 Constraint 3 86 5.4666 6.8333 13.6666 5.9296 Constraint 3 78 4.9484 6.1855 12.3709 5.9296 Constraint 197 551 5.3820 6.7275 13.4551 5.8695 Constraint 197 545 6.2271 7.7839 15.5678 5.8695 Constraint 54 427 6.1987 7.7484 15.4967 5.8441 Constraint 43 691 6.2350 7.7938 15.5875 5.8441 Constraint 434 517 5.6185 7.0232 14.0463 5.8037 Constraint 427 491 4.3955 5.4944 10.9887 5.8037 Constraint 402 491 5.9654 7.4567 14.9134 5.8037 Constraint 3 146 5.4368 6.7960 13.5921 5.5388 Constraint 615 680 5.7370 7.1712 14.3424 5.3691 Constraint 350 691 5.4427 6.8033 13.6067 5.3691 Constraint 340 691 4.5433 5.6791 11.3583 5.3691 Constraint 434 559 6.3833 7.9791 15.9583 5.2465 Constraint 255 626 6.2722 7.8403 15.6805 5.2060 Constraint 243 649 5.9296 7.4120 14.8240 4.8864 Constraint 223 383 5.5428 6.9285 13.8569 4.7352 Constraint 223 374 5.0105 6.2631 12.5262 4.7352 Constraint 146 610 5.0405 6.3006 12.6012 4.6582 Constraint 559 634 4.9585 6.1981 12.3963 4.6180 Constraint 545 649 4.6462 5.8077 11.6155 4.6180 Constraint 545 642 5.7443 7.1804 14.3608 4.6180 Constraint 545 634 4.0567 5.0709 10.1419 4.6180 Constraint 533 660 5.6922 7.1152 14.2304 4.6180 Constraint 533 649 3.8456 4.8071 9.6141 4.6180 Constraint 533 642 5.3191 6.6489 13.2978 4.6180 Constraint 526 660 6.2347 7.7934 15.5867 4.6180 Constraint 517 660 5.6612 7.0765 14.1531 4.6180 Constraint 418 551 3.3465 4.1831 8.3662 4.6180 Constraint 410 610 5.7964 7.2455 14.4909 4.6180 Constraint 410 568 4.6095 5.7618 11.5237 4.6180 Constraint 402 559 4.5705 5.7131 11.4262 4.6180 Constraint 391 634 4.8956 6.1195 12.2389 4.6180 Constraint 391 573 6.3333 7.9166 15.8332 4.6180 Constraint 383 634 3.4898 4.3622 8.7244 4.6180 Constraint 383 573 4.1748 5.2185 10.4370 4.6180 Constraint 374 584 6.1606 7.7007 15.4014 4.6180 Constraint 358 573 5.7060 7.1325 14.2650 4.6180 Constraint 350 559 5.6937 7.1171 14.2343 4.6180 Constraint 350 545 5.6303 7.0379 14.0757 4.6180 Constraint 340 545 6.0952 7.6190 15.2380 4.6180 Constraint 329 649 6.3814 7.9767 15.9535 4.6180 Constraint 255 559 6.3092 7.8865 15.7730 4.6180 Constraint 206 559 4.6700 5.8375 11.6751 4.6180 Constraint 197 667 6.2887 7.8609 15.7219 4.6180 Constraint 189 649 4.7709 5.9636 11.9272 4.6180 Constraint 173 374 6.0676 7.5845 15.1689 4.6180 Constraint 62 223 3.7864 4.7329 9.4659 4.6180 Constraint 62 212 5.2894 6.6118 13.2236 4.6180 Constraint 54 223 5.7389 7.1736 14.3472 4.6180 Constraint 54 212 5.4819 6.8524 13.7047 4.6180 Constraint 43 223 3.3265 4.1582 8.3164 4.6180 Constraint 43 212 5.5333 6.9167 13.8333 4.6180 Constraint 36 212 5.1331 6.4163 12.8326 4.6180 Constraint 165 391 6.0865 7.6081 15.2161 4.5709 Constraint 165 369 6.3257 7.9072 15.8144 4.5709 Constraint 62 551 5.4115 6.7644 13.5288 4.5709 Constraint 559 667 5.8471 7.3089 14.6178 4.4921 Constraint 36 165 4.4261 5.5326 11.0651 4.2764 Constraint 68 173 5.7143 7.1429 14.2859 4.2655 Constraint 68 165 5.2743 6.5929 13.1858 4.2655 Constraint 410 667 4.6781 5.8477 11.6953 4.2345 Constraint 206 634 6.0643 7.5803 15.1607 4.2242 Constraint 165 615 5.7514 7.1893 14.3785 4.2242 Constraint 130 340 5.2051 6.5063 13.0126 4.2242 Constraint 130 329 6.0027 7.5033 15.0067 4.2242 Constraint 97 223 5.9334 7.4168 14.8335 4.2242 Constraint 78 533 5.2719 6.5899 13.1798 4.2242 Constraint 78 526 5.2923 6.6153 13.2307 4.2242 Constraint 78 502 5.7155 7.1444 14.2888 4.2242 Constraint 78 402 4.6754 5.8443 11.6886 4.2242 Constraint 62 274 5.6234 7.0292 14.0584 4.2242 Constraint 62 255 4.4392 5.5490 11.0980 4.2242 Constraint 54 584 4.6558 5.8198 11.6396 4.2242 Constraint 54 329 6.0012 7.5015 15.0031 4.2242 Constraint 54 324 4.8380 6.0475 12.0951 4.2242 Constraint 54 287 4.0578 5.0722 10.1445 4.2242 Constraint 54 280 5.2394 6.5492 13.0985 4.2242 Constraint 43 584 4.6495 5.8119 11.6238 4.2242 Constraint 43 551 5.2574 6.5718 13.1436 4.2242 Constraint 43 319 4.7094 5.8867 11.7735 4.2242 Constraint 36 312 5.7774 7.2218 14.4436 4.2242 Constraint 9 593 5.4940 6.8675 13.7351 4.2242 Constraint 62 173 4.9025 6.1281 12.2561 3.9239 Constraint 173 483 4.5313 5.6641 11.3282 3.9130 Constraint 165 517 6.0189 7.5236 15.0472 3.9130 Constraint 165 512 4.5344 5.6680 11.3359 3.9130 Constraint 165 483 3.4279 4.2849 8.5698 3.9130 Constraint 130 540 5.7537 7.1921 14.3842 3.9130 Constraint 117 545 4.9786 6.2233 12.4466 3.9130 Constraint 117 540 6.3867 7.9834 15.9667 3.9130 Constraint 54 206 4.3438 5.4297 10.8594 3.9130 Constraint 54 197 6.0907 7.6134 15.2267 3.9130 Constraint 470 649 5.8289 7.2861 14.5722 3.3279 Constraint 197 615 5.6333 7.0416 14.0833 3.2298 Constraint 68 223 4.8867 6.1084 12.2168 3.2298 Constraint 68 212 6.1400 7.6750 15.3500 3.2298 Constraint 25 502 6.0754 7.5943 15.1886 3.2298 Constraint 25 183 6.1742 7.7177 15.4354 3.2298 Constraint 17 502 6.2104 7.7630 15.5259 3.2298 Constraint 17 223 4.9451 6.1814 12.3628 3.2298 Constraint 17 183 4.1296 5.1620 10.3240 3.2298 Constraint 9 173 5.3922 6.7402 13.4805 3.2298 Constraint 9 165 4.5160 5.6450 11.2899 3.2298 Constraint 9 157 5.7784 7.2229 14.4459 3.2298 Constraint 9 146 4.2973 5.3716 10.7433 3.2298 Constraint 3 165 5.1336 6.4170 12.8341 3.2298 Constraint 3 157 2.8837 3.6047 7.2093 3.2298 Constraint 427 568 5.8521 7.3151 14.6301 3.1443 Constraint 312 601 6.1620 7.7025 15.4050 3.1443 Constraint 312 593 6.3952 7.9940 15.9880 3.1443 Constraint 243 642 5.9576 7.4470 14.8941 3.1443 Constraint 369 642 6.3892 7.9865 15.9730 3.0715 Constraint 157 526 4.5320 5.6650 11.3300 3.0624 Constraint 157 402 5.8554 7.3192 14.6385 3.0624 Constraint 130 324 6.0023 7.5029 15.0057 3.0624 Constraint 54 173 3.7406 4.6758 9.3516 2.9648 Constraint 17 97 5.9413 7.4266 14.8533 2.9648 Constraint 402 517 5.9670 7.4588 14.9176 2.9019 Constraint 212 512 6.0072 7.5090 15.0180 2.6308 Constraint 470 660 6.1589 7.6987 15.3974 2.6148 Constraint 559 660 5.0589 6.3236 12.6471 2.6123 Constraint 483 559 5.4410 6.8012 13.6024 2.4453 Constraint 483 551 4.7194 5.8992 11.7985 2.4453 Constraint 470 545 4.3097 5.3872 10.7744 2.4453 Constraint 234 545 5.0592 6.3241 12.6481 2.4453 Constraint 9 358 6.2324 7.7905 15.5810 2.3098 Constraint 374 649 5.1481 6.4352 12.8703 2.3090 Constraint 206 642 4.6704 5.8380 11.6760 2.3090 Constraint 206 568 4.6355 5.7943 11.5886 2.3090 Constraint 206 374 6.1790 7.7237 15.4474 2.3090 Constraint 197 410 5.5118 6.8897 13.7794 2.3090 Constraint 189 642 3.4904 4.3630 8.7261 2.3090 Constraint 78 391 5.5345 6.9181 13.8362 2.3090 Constraint 78 223 5.3392 6.6741 13.3481 2.3090 Constraint 68 512 6.3173 7.8966 15.7932 2.3090 Constraint 68 502 3.9662 4.9577 9.9155 2.3090 Constraint 68 470 5.8957 7.3696 14.7392 2.3090 Constraint 68 234 4.6565 5.8206 11.6412 2.3090 Constraint 62 502 5.5378 6.9222 13.8444 2.3090 Constraint 62 243 3.7616 4.7020 9.4041 2.3090 Constraint 62 234 5.3505 6.6881 13.3762 2.3090 Constraint 54 526 4.9581 6.1976 12.3952 2.3090 Constraint 54 502 3.4863 4.3579 8.7157 2.3090 Constraint 54 263 5.3373 6.6717 13.3433 2.3090 Constraint 54 255 5.1744 6.4679 12.9359 2.3090 Constraint 54 243 5.4480 6.8099 13.6199 2.3090 Constraint 54 234 3.9241 4.9051 9.8102 2.3090 Constraint 54 183 6.2558 7.8197 15.6394 2.3090 Constraint 43 274 3.5815 4.4769 8.9538 2.3090 Constraint 43 263 3.3571 4.1963 8.3927 2.3090 Constraint 43 255 6.0416 7.5520 15.1040 2.3090 Constraint 43 189 6.3055 7.8819 15.7637 2.3090 Constraint 43 183 4.9047 6.1309 12.2617 2.3090 Constraint 36 319 3.6222 4.5277 9.0554 2.3090 Constraint 36 280 4.2407 5.3008 10.6017 2.3090 Constraint 36 274 5.4600 6.8249 13.6499 2.3090 Constraint 36 263 6.3430 7.9287 15.8574 2.3090 Constraint 36 255 4.8956 6.1195 12.2390 2.3090 Constraint 36 189 5.2709 6.5886 13.1773 2.3090 Constraint 25 324 5.0424 6.3029 12.6059 2.3090 Constraint 25 319 4.1790 5.2237 10.4474 2.3090 Constraint 25 306 1.9390 2.4238 4.8475 2.3090 Constraint 25 287 3.0532 3.8165 7.6329 2.3090 Constraint 25 280 5.3680 6.7099 13.4199 2.3090 Constraint 25 157 3.4371 4.2964 8.5929 2.3090 Constraint 25 146 4.2812 5.3515 10.7030 2.3090 Constraint 17 551 4.3950 5.4938 10.9875 2.3090 Constraint 17 319 3.9733 4.9667 9.9334 2.3090 Constraint 17 312 3.9810 4.9762 9.9524 2.3090 Constraint 17 306 5.2241 6.5302 13.0603 2.3090 Constraint 17 146 6.3110 7.8888 15.7776 2.3090 Constraint 17 117 5.8604 7.3255 14.6511 2.3090 Constraint 17 110 3.0481 3.8101 7.6202 2.3090 Constraint 9 312 5.3294 6.6618 13.3236 2.3090 Constraint 9 306 5.7470 7.1837 14.3674 2.3090 Constraint 3 568 4.0677 5.0846 10.1692 2.3090 Constraint 3 551 3.8038 4.7547 9.5095 2.3090 Constraint 206 517 6.2028 7.7535 15.5070 2.2459 Constraint 78 383 5.8348 7.2935 14.5871 2.1286 Constraint 62 358 5.8828 7.3535 14.7069 2.1286 Constraint 206 280 4.0861 5.1076 10.2153 1.9674 Constraint 197 350 5.8750 7.3437 14.6875 1.9674 Constraint 197 319 3.9087 4.8859 9.7717 1.9674 Constraint 197 295 6.0675 7.5844 15.1687 1.9674 Constraint 197 280 3.1617 3.9522 7.9044 1.9674 Constraint 197 274 6.1739 7.7173 15.4347 1.9674 Constraint 36 173 6.0332 7.5415 15.0830 1.9674 Constraint 593 660 3.7850 4.7312 9.4624 1.9565 Constraint 584 673 5.9653 7.4566 14.9132 1.9565 Constraint 584 667 6.2774 7.8468 15.6935 1.9565 Constraint 584 660 5.0733 6.3416 12.6831 1.9565 Constraint 540 660 5.4961 6.8701 13.7403 1.9565 Constraint 280 626 6.2338 7.7923 15.5845 1.9565 Constraint 280 615 4.6107 5.7633 11.5267 1.9565 Constraint 280 610 6.1964 7.7455 15.4909 1.9565 Constraint 280 517 3.9691 4.9614 9.9227 1.9565 Constraint 280 502 5.0521 6.3151 12.6302 1.9565 Constraint 274 642 5.8072 7.2590 14.5180 1.9565 Constraint 274 626 3.6912 4.6140 9.2281 1.9565 Constraint 274 615 5.9441 7.4301 14.8602 1.9565 Constraint 274 329 4.1486 5.1857 10.3714 1.9565 Constraint 263 642 6.2977 7.8721 15.7442 1.9565 Constraint 263 634 4.6268 5.7835 11.5671 1.9565 Constraint 263 626 5.7883 7.2354 14.4708 1.9565 Constraint 263 615 6.1239 7.6549 15.3098 1.9565 Constraint 263 502 5.2264 6.5330 13.0659 1.9565 Constraint 263 470 5.0207 6.2759 12.5517 1.9565 Constraint 263 455 5.9464 7.4330 14.8660 1.9565 Constraint 263 329 5.9676 7.4594 14.9189 1.9565 Constraint 255 329 5.7096 7.1370 14.2740 1.9565 Constraint 68 183 4.5961 5.7452 11.4903 1.9565 Constraint 62 183 4.9028 6.1285 12.2570 1.9565 Constraint 234 383 4.9459 6.1823 12.3646 1.9510 Constraint 234 374 4.2867 5.3584 10.7168 1.9510 Constraint 9 391 4.9417 6.1771 12.3542 1.9480 Constraint 110 295 4.4044 5.5055 11.0110 1.7421 Constraint 110 280 5.6269 7.0336 14.0673 1.7421 Constraint 463 573 6.0131 7.5164 15.0328 1.6302 Constraint 418 680 5.5008 6.8760 13.7519 1.6302 Constraint 212 667 4.4465 5.5581 11.1163 1.4262 Constraint 206 667 6.1876 7.7344 15.4689 0.9508 Constraint 350 667 5.7211 7.1514 14.3027 0.9347 Constraint 340 667 4.2053 5.2566 10.5132 0.9347 Constraint 610 691 6.3427 7.9284 15.8568 0.8151 Constraint 610 673 4.1758 5.2197 10.4394 0.8151 Constraint 601 680 4.6637 5.8297 11.6593 0.8151 Constraint 601 673 5.4811 6.8513 13.7026 0.8151 Constraint 593 691 3.3943 4.2428 8.4856 0.8151 Constraint 593 680 5.4826 6.8533 13.7066 0.8151 Constraint 593 673 5.3121 6.6402 13.2803 0.8151 Constraint 584 691 4.2720 5.3400 10.6799 0.8151 Constraint 584 680 5.0225 6.2782 12.5564 0.8151 Constraint 573 691 5.1863 6.4829 12.9657 0.8151 Constraint 340 673 4.7238 5.9047 11.8094 0.8151 Constraint 329 680 6.3609 7.9511 15.9022 0.8151 Constraint 329 673 6.3451 7.9314 15.8628 0.8151 Constraint 312 691 5.6004 7.0005 14.0009 0.8151 Constraint 312 680 5.3565 6.6956 13.3912 0.8151 Constraint 312 673 4.2474 5.3092 10.6184 0.8151 Constraint 551 642 5.0751 6.3438 12.6876 0.6558 Constraint 402 502 6.3034 7.8793 15.7586 0.6558 Constraint 329 634 6.0404 7.5505 15.1010 0.6558 Constraint 329 626 5.8756 7.3445 14.6890 0.6558 Constraint 312 626 3.9354 4.9192 9.8384 0.6558 Constraint 306 649 3.9455 4.9319 9.8637 0.6558 Constraint 117 197 3.8566 4.8208 9.6416 0.6558 Constraint 97 197 5.1430 6.4288 12.8576 0.6558 Constraint 117 280 5.7774 7.2217 14.4434 0.4178 Constraint 157 491 5.6637 7.0797 14.1594 0.2089 Constraint 680 691 0.8000 1.0000 2.0000 0.0000 Constraint 673 691 0.8000 1.0000 2.0000 0.0000 Constraint 673 680 0.8000 1.0000 2.0000 0.0000 Constraint 667 691 0.8000 1.0000 2.0000 0.0000 Constraint 667 680 0.8000 1.0000 2.0000 0.0000 Constraint 667 673 0.8000 1.0000 2.0000 0.0000 Constraint 660 691 0.8000 1.0000 2.0000 0.0000 Constraint 660 680 0.8000 1.0000 2.0000 0.0000 Constraint 660 673 0.8000 1.0000 2.0000 0.0000 Constraint 660 667 0.8000 1.0000 2.0000 0.0000 Constraint 649 691 0.8000 1.0000 2.0000 0.0000 Constraint 649 680 0.8000 1.0000 2.0000 0.0000 Constraint 649 673 0.8000 1.0000 2.0000 0.0000 Constraint 649 667 0.8000 1.0000 2.0000 0.0000 Constraint 649 660 0.8000 1.0000 2.0000 0.0000 Constraint 642 691 0.8000 1.0000 2.0000 0.0000 Constraint 642 680 0.8000 1.0000 2.0000 0.0000 Constraint 642 673 0.8000 1.0000 2.0000 0.0000 Constraint 642 667 0.8000 1.0000 2.0000 0.0000 Constraint 642 660 0.8000 1.0000 2.0000 0.0000 Constraint 642 649 0.8000 1.0000 2.0000 0.0000 Constraint 634 691 0.8000 1.0000 2.0000 0.0000 Constraint 634 680 0.8000 1.0000 2.0000 0.0000 Constraint 634 673 0.8000 1.0000 2.0000 0.0000 Constraint 634 667 0.8000 1.0000 2.0000 0.0000 Constraint 634 660 0.8000 1.0000 2.0000 0.0000 Constraint 634 649 0.8000 1.0000 2.0000 0.0000 Constraint 634 642 0.8000 1.0000 2.0000 0.0000 Constraint 626 680 0.8000 1.0000 2.0000 0.0000 Constraint 626 673 0.8000 1.0000 2.0000 0.0000 Constraint 626 667 0.8000 1.0000 2.0000 0.0000 Constraint 626 660 0.8000 1.0000 2.0000 0.0000 Constraint 626 649 0.8000 1.0000 2.0000 0.0000 Constraint 626 642 0.8000 1.0000 2.0000 0.0000 Constraint 626 634 0.8000 1.0000 2.0000 0.0000 Constraint 615 673 0.8000 1.0000 2.0000 0.0000 Constraint 615 667 0.8000 1.0000 2.0000 0.0000 Constraint 615 660 0.8000 1.0000 2.0000 0.0000 Constraint 615 649 0.8000 1.0000 2.0000 0.0000 Constraint 615 642 0.8000 1.0000 2.0000 0.0000 Constraint 615 634 0.8000 1.0000 2.0000 0.0000 Constraint 615 626 0.8000 1.0000 2.0000 0.0000 Constraint 610 680 0.8000 1.0000 2.0000 0.0000 Constraint 610 667 0.8000 1.0000 2.0000 0.0000 Constraint 610 660 0.8000 1.0000 2.0000 0.0000 Constraint 610 649 0.8000 1.0000 2.0000 0.0000 Constraint 610 642 0.8000 1.0000 2.0000 0.0000 Constraint 610 634 0.8000 1.0000 2.0000 0.0000 Constraint 610 626 0.8000 1.0000 2.0000 0.0000 Constraint 610 615 0.8000 1.0000 2.0000 0.0000 Constraint 601 691 0.8000 1.0000 2.0000 0.0000 Constraint 601 667 0.8000 1.0000 2.0000 0.0000 Constraint 601 660 0.8000 1.0000 2.0000 0.0000 Constraint 601 649 0.8000 1.0000 2.0000 0.0000 Constraint 601 642 0.8000 1.0000 2.0000 0.0000 Constraint 601 634 0.8000 1.0000 2.0000 0.0000 Constraint 601 626 0.8000 1.0000 2.0000 0.0000 Constraint 601 615 0.8000 1.0000 2.0000 0.0000 Constraint 601 610 0.8000 1.0000 2.0000 0.0000 Constraint 593 667 0.8000 1.0000 2.0000 0.0000 Constraint 593 649 0.8000 1.0000 2.0000 0.0000 Constraint 593 642 0.8000 1.0000 2.0000 0.0000 Constraint 593 634 0.8000 1.0000 2.0000 0.0000 Constraint 593 626 0.8000 1.0000 2.0000 0.0000 Constraint 593 615 0.8000 1.0000 2.0000 0.0000 Constraint 593 610 0.8000 1.0000 2.0000 0.0000 Constraint 593 601 0.8000 1.0000 2.0000 0.0000 Constraint 584 649 0.8000 1.0000 2.0000 0.0000 Constraint 584 642 0.8000 1.0000 2.0000 0.0000 Constraint 584 634 0.8000 1.0000 2.0000 0.0000 Constraint 584 626 0.8000 1.0000 2.0000 0.0000 Constraint 584 615 0.8000 1.0000 2.0000 0.0000 Constraint 584 610 0.8000 1.0000 2.0000 0.0000 Constraint 584 601 0.8000 1.0000 2.0000 0.0000 Constraint 584 593 0.8000 1.0000 2.0000 0.0000 Constraint 573 680 0.8000 1.0000 2.0000 0.0000 Constraint 573 673 0.8000 1.0000 2.0000 0.0000 Constraint 573 667 0.8000 1.0000 2.0000 0.0000 Constraint 573 660 0.8000 1.0000 2.0000 0.0000 Constraint 573 649 0.8000 1.0000 2.0000 0.0000 Constraint 573 642 0.8000 1.0000 2.0000 0.0000 Constraint 573 634 0.8000 1.0000 2.0000 0.0000 Constraint 573 626 0.8000 1.0000 2.0000 0.0000 Constraint 573 615 0.8000 1.0000 2.0000 0.0000 Constraint 573 610 0.8000 1.0000 2.0000 0.0000 Constraint 573 601 0.8000 1.0000 2.0000 0.0000 Constraint 573 593 0.8000 1.0000 2.0000 0.0000 Constraint 573 584 0.8000 1.0000 2.0000 0.0000 Constraint 568 691 0.8000 1.0000 2.0000 0.0000 Constraint 568 680 0.8000 1.0000 2.0000 0.0000 Constraint 568 673 0.8000 1.0000 2.0000 0.0000 Constraint 568 667 0.8000 1.0000 2.0000 0.0000 Constraint 568 660 0.8000 1.0000 2.0000 0.0000 Constraint 568 649 0.8000 1.0000 2.0000 0.0000 Constraint 568 642 0.8000 1.0000 2.0000 0.0000 Constraint 568 634 0.8000 1.0000 2.0000 0.0000 Constraint 568 626 0.8000 1.0000 2.0000 0.0000 Constraint 568 615 0.8000 1.0000 2.0000 0.0000 Constraint 568 610 0.8000 1.0000 2.0000 0.0000 Constraint 568 601 0.8000 1.0000 2.0000 0.0000 Constraint 568 593 0.8000 1.0000 2.0000 0.0000 Constraint 568 584 0.8000 1.0000 2.0000 0.0000 Constraint 568 573 0.8000 1.0000 2.0000 0.0000 Constraint 559 691 0.8000 1.0000 2.0000 0.0000 Constraint 559 680 0.8000 1.0000 2.0000 0.0000 Constraint 559 673 0.8000 1.0000 2.0000 0.0000 Constraint 559 649 0.8000 1.0000 2.0000 0.0000 Constraint 559 642 0.8000 1.0000 2.0000 0.0000 Constraint 559 626 0.8000 1.0000 2.0000 0.0000 Constraint 559 615 0.8000 1.0000 2.0000 0.0000 Constraint 559 610 0.8000 1.0000 2.0000 0.0000 Constraint 559 601 0.8000 1.0000 2.0000 0.0000 Constraint 559 593 0.8000 1.0000 2.0000 0.0000 Constraint 559 584 0.8000 1.0000 2.0000 0.0000 Constraint 559 573 0.8000 1.0000 2.0000 0.0000 Constraint 559 568 0.8000 1.0000 2.0000 0.0000 Constraint 551 691 0.8000 1.0000 2.0000 0.0000 Constraint 551 680 0.8000 1.0000 2.0000 0.0000 Constraint 551 673 0.8000 1.0000 2.0000 0.0000 Constraint 551 667 0.8000 1.0000 2.0000 0.0000 Constraint 551 660 0.8000 1.0000 2.0000 0.0000 Constraint 551 649 0.8000 1.0000 2.0000 0.0000 Constraint 551 615 0.8000 1.0000 2.0000 0.0000 Constraint 551 610 0.8000 1.0000 2.0000 0.0000 Constraint 551 601 0.8000 1.0000 2.0000 0.0000 Constraint 551 593 0.8000 1.0000 2.0000 0.0000 Constraint 551 584 0.8000 1.0000 2.0000 0.0000 Constraint 551 573 0.8000 1.0000 2.0000 0.0000 Constraint 551 568 0.8000 1.0000 2.0000 0.0000 Constraint 551 559 0.8000 1.0000 2.0000 0.0000 Constraint 545 691 0.8000 1.0000 2.0000 0.0000 Constraint 545 680 0.8000 1.0000 2.0000 0.0000 Constraint 545 673 0.8000 1.0000 2.0000 0.0000 Constraint 545 667 0.8000 1.0000 2.0000 0.0000 Constraint 545 660 0.8000 1.0000 2.0000 0.0000 Constraint 545 610 0.8000 1.0000 2.0000 0.0000 Constraint 545 601 0.8000 1.0000 2.0000 0.0000 Constraint 545 593 0.8000 1.0000 2.0000 0.0000 Constraint 545 584 0.8000 1.0000 2.0000 0.0000 Constraint 545 573 0.8000 1.0000 2.0000 0.0000 Constraint 545 568 0.8000 1.0000 2.0000 0.0000 Constraint 545 559 0.8000 1.0000 2.0000 0.0000 Constraint 545 551 0.8000 1.0000 2.0000 0.0000 Constraint 540 691 0.8000 1.0000 2.0000 0.0000 Constraint 540 680 0.8000 1.0000 2.0000 0.0000 Constraint 540 673 0.8000 1.0000 2.0000 0.0000 Constraint 540 667 0.8000 1.0000 2.0000 0.0000 Constraint 540 649 0.8000 1.0000 2.0000 0.0000 Constraint 540 601 0.8000 1.0000 2.0000 0.0000 Constraint 540 593 0.8000 1.0000 2.0000 0.0000 Constraint 540 584 0.8000 1.0000 2.0000 0.0000 Constraint 540 573 0.8000 1.0000 2.0000 0.0000 Constraint 540 568 0.8000 1.0000 2.0000 0.0000 Constraint 540 559 0.8000 1.0000 2.0000 0.0000 Constraint 540 551 0.8000 1.0000 2.0000 0.0000 Constraint 540 545 0.8000 1.0000 2.0000 0.0000 Constraint 533 691 0.8000 1.0000 2.0000 0.0000 Constraint 533 680 0.8000 1.0000 2.0000 0.0000 Constraint 533 673 0.8000 1.0000 2.0000 0.0000 Constraint 533 667 0.8000 1.0000 2.0000 0.0000 Constraint 533 601 0.8000 1.0000 2.0000 0.0000 Constraint 533 593 0.8000 1.0000 2.0000 0.0000 Constraint 533 584 0.8000 1.0000 2.0000 0.0000 Constraint 533 573 0.8000 1.0000 2.0000 0.0000 Constraint 533 568 0.8000 1.0000 2.0000 0.0000 Constraint 533 559 0.8000 1.0000 2.0000 0.0000 Constraint 533 551 0.8000 1.0000 2.0000 0.0000 Constraint 533 545 0.8000 1.0000 2.0000 0.0000 Constraint 533 540 0.8000 1.0000 2.0000 0.0000 Constraint 526 691 0.8000 1.0000 2.0000 0.0000 Constraint 526 680 0.8000 1.0000 2.0000 0.0000 Constraint 526 673 0.8000 1.0000 2.0000 0.0000 Constraint 526 667 0.8000 1.0000 2.0000 0.0000 Constraint 526 626 0.8000 1.0000 2.0000 0.0000 Constraint 526 615 0.8000 1.0000 2.0000 0.0000 Constraint 526 610 0.8000 1.0000 2.0000 0.0000 Constraint 526 601 0.8000 1.0000 2.0000 0.0000 Constraint 526 593 0.8000 1.0000 2.0000 0.0000 Constraint 526 584 0.8000 1.0000 2.0000 0.0000 Constraint 526 573 0.8000 1.0000 2.0000 0.0000 Constraint 526 568 0.8000 1.0000 2.0000 0.0000 Constraint 526 559 0.8000 1.0000 2.0000 0.0000 Constraint 526 551 0.8000 1.0000 2.0000 0.0000 Constraint 526 545 0.8000 1.0000 2.0000 0.0000 Constraint 526 540 0.8000 1.0000 2.0000 0.0000 Constraint 526 533 0.8000 1.0000 2.0000 0.0000 Constraint 517 691 0.8000 1.0000 2.0000 0.0000 Constraint 517 680 0.8000 1.0000 2.0000 0.0000 Constraint 517 673 0.8000 1.0000 2.0000 0.0000 Constraint 517 667 0.8000 1.0000 2.0000 0.0000 Constraint 517 626 0.8000 1.0000 2.0000 0.0000 Constraint 517 615 0.8000 1.0000 2.0000 0.0000 Constraint 517 610 0.8000 1.0000 2.0000 0.0000 Constraint 517 601 0.8000 1.0000 2.0000 0.0000 Constraint 517 593 0.8000 1.0000 2.0000 0.0000 Constraint 517 584 0.8000 1.0000 2.0000 0.0000 Constraint 517 573 0.8000 1.0000 2.0000 0.0000 Constraint 517 568 0.8000 1.0000 2.0000 0.0000 Constraint 517 559 0.8000 1.0000 2.0000 0.0000 Constraint 517 551 0.8000 1.0000 2.0000 0.0000 Constraint 517 545 0.8000 1.0000 2.0000 0.0000 Constraint 517 540 0.8000 1.0000 2.0000 0.0000 Constraint 517 533 0.8000 1.0000 2.0000 0.0000 Constraint 517 526 0.8000 1.0000 2.0000 0.0000 Constraint 512 691 0.8000 1.0000 2.0000 0.0000 Constraint 512 680 0.8000 1.0000 2.0000 0.0000 Constraint 512 673 0.8000 1.0000 2.0000 0.0000 Constraint 512 667 0.8000 1.0000 2.0000 0.0000 Constraint 512 660 0.8000 1.0000 2.0000 0.0000 Constraint 512 642 0.8000 1.0000 2.0000 0.0000 Constraint 512 634 0.8000 1.0000 2.0000 0.0000 Constraint 512 626 0.8000 1.0000 2.0000 0.0000 Constraint 512 615 0.8000 1.0000 2.0000 0.0000 Constraint 512 610 0.8000 1.0000 2.0000 0.0000 Constraint 512 601 0.8000 1.0000 2.0000 0.0000 Constraint 512 593 0.8000 1.0000 2.0000 0.0000 Constraint 512 584 0.8000 1.0000 2.0000 0.0000 Constraint 512 573 0.8000 1.0000 2.0000 0.0000 Constraint 512 568 0.8000 1.0000 2.0000 0.0000 Constraint 512 559 0.8000 1.0000 2.0000 0.0000 Constraint 512 551 0.8000 1.0000 2.0000 0.0000 Constraint 512 545 0.8000 1.0000 2.0000 0.0000 Constraint 512 540 0.8000 1.0000 2.0000 0.0000 Constraint 512 533 0.8000 1.0000 2.0000 0.0000 Constraint 512 526 0.8000 1.0000 2.0000 0.0000 Constraint 512 517 0.8000 1.0000 2.0000 0.0000 Constraint 502 691 0.8000 1.0000 2.0000 0.0000 Constraint 502 680 0.8000 1.0000 2.0000 0.0000 Constraint 502 673 0.8000 1.0000 2.0000 0.0000 Constraint 502 667 0.8000 1.0000 2.0000 0.0000 Constraint 502 660 0.8000 1.0000 2.0000 0.0000 Constraint 502 649 0.8000 1.0000 2.0000 0.0000 Constraint 502 642 0.8000 1.0000 2.0000 0.0000 Constraint 502 634 0.8000 1.0000 2.0000 0.0000 Constraint 502 626 0.8000 1.0000 2.0000 0.0000 Constraint 502 615 0.8000 1.0000 2.0000 0.0000 Constraint 502 610 0.8000 1.0000 2.0000 0.0000 Constraint 502 601 0.8000 1.0000 2.0000 0.0000 Constraint 502 593 0.8000 1.0000 2.0000 0.0000 Constraint 502 584 0.8000 1.0000 2.0000 0.0000 Constraint 502 573 0.8000 1.0000 2.0000 0.0000 Constraint 502 568 0.8000 1.0000 2.0000 0.0000 Constraint 502 559 0.8000 1.0000 2.0000 0.0000 Constraint 502 551 0.8000 1.0000 2.0000 0.0000 Constraint 502 545 0.8000 1.0000 2.0000 0.0000 Constraint 502 540 0.8000 1.0000 2.0000 0.0000 Constraint 502 533 0.8000 1.0000 2.0000 0.0000 Constraint 502 526 0.8000 1.0000 2.0000 0.0000 Constraint 502 517 0.8000 1.0000 2.0000 0.0000 Constraint 502 512 0.8000 1.0000 2.0000 0.0000 Constraint 491 691 0.8000 1.0000 2.0000 0.0000 Constraint 491 680 0.8000 1.0000 2.0000 0.0000 Constraint 491 673 0.8000 1.0000 2.0000 0.0000 Constraint 491 667 0.8000 1.0000 2.0000 0.0000 Constraint 491 660 0.8000 1.0000 2.0000 0.0000 Constraint 491 649 0.8000 1.0000 2.0000 0.0000 Constraint 491 642 0.8000 1.0000 2.0000 0.0000 Constraint 491 634 0.8000 1.0000 2.0000 0.0000 Constraint 491 626 0.8000 1.0000 2.0000 0.0000 Constraint 491 615 0.8000 1.0000 2.0000 0.0000 Constraint 491 610 0.8000 1.0000 2.0000 0.0000 Constraint 491 601 0.8000 1.0000 2.0000 0.0000 Constraint 491 593 0.8000 1.0000 2.0000 0.0000 Constraint 491 584 0.8000 1.0000 2.0000 0.0000 Constraint 491 573 0.8000 1.0000 2.0000 0.0000 Constraint 491 568 0.8000 1.0000 2.0000 0.0000 Constraint 491 559 0.8000 1.0000 2.0000 0.0000 Constraint 491 551 0.8000 1.0000 2.0000 0.0000 Constraint 491 545 0.8000 1.0000 2.0000 0.0000 Constraint 491 540 0.8000 1.0000 2.0000 0.0000 Constraint 491 533 0.8000 1.0000 2.0000 0.0000 Constraint 491 526 0.8000 1.0000 2.0000 0.0000 Constraint 491 517 0.8000 1.0000 2.0000 0.0000 Constraint 491 512 0.8000 1.0000 2.0000 0.0000 Constraint 491 502 0.8000 1.0000 2.0000 0.0000 Constraint 483 691 0.8000 1.0000 2.0000 0.0000 Constraint 483 680 0.8000 1.0000 2.0000 0.0000 Constraint 483 673 0.8000 1.0000 2.0000 0.0000 Constraint 483 667 0.8000 1.0000 2.0000 0.0000 Constraint 483 660 0.8000 1.0000 2.0000 0.0000 Constraint 483 649 0.8000 1.0000 2.0000 0.0000 Constraint 483 642 0.8000 1.0000 2.0000 0.0000 Constraint 483 634 0.8000 1.0000 2.0000 0.0000 Constraint 483 626 0.8000 1.0000 2.0000 0.0000 Constraint 483 615 0.8000 1.0000 2.0000 0.0000 Constraint 483 610 0.8000 1.0000 2.0000 0.0000 Constraint 483 601 0.8000 1.0000 2.0000 0.0000 Constraint 483 593 0.8000 1.0000 2.0000 0.0000 Constraint 483 584 0.8000 1.0000 2.0000 0.0000 Constraint 483 573 0.8000 1.0000 2.0000 0.0000 Constraint 483 568 0.8000 1.0000 2.0000 0.0000 Constraint 483 545 0.8000 1.0000 2.0000 0.0000 Constraint 483 540 0.8000 1.0000 2.0000 0.0000 Constraint 483 533 0.8000 1.0000 2.0000 0.0000 Constraint 483 526 0.8000 1.0000 2.0000 0.0000 Constraint 483 517 0.8000 1.0000 2.0000 0.0000 Constraint 483 512 0.8000 1.0000 2.0000 0.0000 Constraint 483 502 0.8000 1.0000 2.0000 0.0000 Constraint 483 491 0.8000 1.0000 2.0000 0.0000 Constraint 470 691 0.8000 1.0000 2.0000 0.0000 Constraint 470 673 0.8000 1.0000 2.0000 0.0000 Constraint 470 667 0.8000 1.0000 2.0000 0.0000 Constraint 470 642 0.8000 1.0000 2.0000 0.0000 Constraint 470 634 0.8000 1.0000 2.0000 0.0000 Constraint 470 626 0.8000 1.0000 2.0000 0.0000 Constraint 470 615 0.8000 1.0000 2.0000 0.0000 Constraint 470 610 0.8000 1.0000 2.0000 0.0000 Constraint 470 601 0.8000 1.0000 2.0000 0.0000 Constraint 470 593 0.8000 1.0000 2.0000 0.0000 Constraint 470 584 0.8000 1.0000 2.0000 0.0000 Constraint 470 573 0.8000 1.0000 2.0000 0.0000 Constraint 470 568 0.8000 1.0000 2.0000 0.0000 Constraint 470 559 0.8000 1.0000 2.0000 0.0000 Constraint 470 551 0.8000 1.0000 2.0000 0.0000 Constraint 470 540 0.8000 1.0000 2.0000 0.0000 Constraint 470 533 0.8000 1.0000 2.0000 0.0000 Constraint 470 526 0.8000 1.0000 2.0000 0.0000 Constraint 470 517 0.8000 1.0000 2.0000 0.0000 Constraint 470 512 0.8000 1.0000 2.0000 0.0000 Constraint 470 502 0.8000 1.0000 2.0000 0.0000 Constraint 470 491 0.8000 1.0000 2.0000 0.0000 Constraint 470 483 0.8000 1.0000 2.0000 0.0000 Constraint 463 691 0.8000 1.0000 2.0000 0.0000 Constraint 463 680 0.8000 1.0000 2.0000 0.0000 Constraint 463 673 0.8000 1.0000 2.0000 0.0000 Constraint 463 667 0.8000 1.0000 2.0000 0.0000 Constraint 463 660 0.8000 1.0000 2.0000 0.0000 Constraint 463 649 0.8000 1.0000 2.0000 0.0000 Constraint 463 642 0.8000 1.0000 2.0000 0.0000 Constraint 463 615 0.8000 1.0000 2.0000 0.0000 Constraint 463 610 0.8000 1.0000 2.0000 0.0000 Constraint 463 601 0.8000 1.0000 2.0000 0.0000 Constraint 463 593 0.8000 1.0000 2.0000 0.0000 Constraint 463 584 0.8000 1.0000 2.0000 0.0000 Constraint 463 568 0.8000 1.0000 2.0000 0.0000 Constraint 463 559 0.8000 1.0000 2.0000 0.0000 Constraint 463 540 0.8000 1.0000 2.0000 0.0000 Constraint 463 526 0.8000 1.0000 2.0000 0.0000 Constraint 463 517 0.8000 1.0000 2.0000 0.0000 Constraint 463 512 0.8000 1.0000 2.0000 0.0000 Constraint 463 502 0.8000 1.0000 2.0000 0.0000 Constraint 463 491 0.8000 1.0000 2.0000 0.0000 Constraint 463 483 0.8000 1.0000 2.0000 0.0000 Constraint 463 470 0.8000 1.0000 2.0000 0.0000 Constraint 455 691 0.8000 1.0000 2.0000 0.0000 Constraint 455 680 0.8000 1.0000 2.0000 0.0000 Constraint 455 667 0.8000 1.0000 2.0000 0.0000 Constraint 455 660 0.8000 1.0000 2.0000 0.0000 Constraint 455 626 0.8000 1.0000 2.0000 0.0000 Constraint 455 615 0.8000 1.0000 2.0000 0.0000 Constraint 455 610 0.8000 1.0000 2.0000 0.0000 Constraint 455 601 0.8000 1.0000 2.0000 0.0000 Constraint 455 593 0.8000 1.0000 2.0000 0.0000 Constraint 455 584 0.8000 1.0000 2.0000 0.0000 Constraint 455 573 0.8000 1.0000 2.0000 0.0000 Constraint 455 568 0.8000 1.0000 2.0000 0.0000 Constraint 455 559 0.8000 1.0000 2.0000 0.0000 Constraint 455 551 0.8000 1.0000 2.0000 0.0000 Constraint 455 545 0.8000 1.0000 2.0000 0.0000 Constraint 455 540 0.8000 1.0000 2.0000 0.0000 Constraint 455 533 0.8000 1.0000 2.0000 0.0000 Constraint 455 517 0.8000 1.0000 2.0000 0.0000 Constraint 455 512 0.8000 1.0000 2.0000 0.0000 Constraint 455 502 0.8000 1.0000 2.0000 0.0000 Constraint 455 491 0.8000 1.0000 2.0000 0.0000 Constraint 455 483 0.8000 1.0000 2.0000 0.0000 Constraint 455 470 0.8000 1.0000 2.0000 0.0000 Constraint 455 463 0.8000 1.0000 2.0000 0.0000 Constraint 446 691 0.8000 1.0000 2.0000 0.0000 Constraint 446 680 0.8000 1.0000 2.0000 0.0000 Constraint 446 673 0.8000 1.0000 2.0000 0.0000 Constraint 446 667 0.8000 1.0000 2.0000 0.0000 Constraint 446 660 0.8000 1.0000 2.0000 0.0000 Constraint 446 649 0.8000 1.0000 2.0000 0.0000 Constraint 446 642 0.8000 1.0000 2.0000 0.0000 Constraint 446 634 0.8000 1.0000 2.0000 0.0000 Constraint 446 626 0.8000 1.0000 2.0000 0.0000 Constraint 446 615 0.8000 1.0000 2.0000 0.0000 Constraint 446 610 0.8000 1.0000 2.0000 0.0000 Constraint 446 601 0.8000 1.0000 2.0000 0.0000 Constraint 446 593 0.8000 1.0000 2.0000 0.0000 Constraint 446 584 0.8000 1.0000 2.0000 0.0000 Constraint 446 559 0.8000 1.0000 2.0000 0.0000 Constraint 446 512 0.8000 1.0000 2.0000 0.0000 Constraint 446 502 0.8000 1.0000 2.0000 0.0000 Constraint 446 491 0.8000 1.0000 2.0000 0.0000 Constraint 446 483 0.8000 1.0000 2.0000 0.0000 Constraint 446 470 0.8000 1.0000 2.0000 0.0000 Constraint 446 463 0.8000 1.0000 2.0000 0.0000 Constraint 446 455 0.8000 1.0000 2.0000 0.0000 Constraint 434 691 0.8000 1.0000 2.0000 0.0000 Constraint 434 680 0.8000 1.0000 2.0000 0.0000 Constraint 434 673 0.8000 1.0000 2.0000 0.0000 Constraint 434 667 0.8000 1.0000 2.0000 0.0000 Constraint 434 660 0.8000 1.0000 2.0000 0.0000 Constraint 434 649 0.8000 1.0000 2.0000 0.0000 Constraint 434 512 0.8000 1.0000 2.0000 0.0000 Constraint 434 491 0.8000 1.0000 2.0000 0.0000 Constraint 434 483 0.8000 1.0000 2.0000 0.0000 Constraint 434 470 0.8000 1.0000 2.0000 0.0000 Constraint 434 463 0.8000 1.0000 2.0000 0.0000 Constraint 434 455 0.8000 1.0000 2.0000 0.0000 Constraint 434 446 0.8000 1.0000 2.0000 0.0000 Constraint 427 691 0.8000 1.0000 2.0000 0.0000 Constraint 427 680 0.8000 1.0000 2.0000 0.0000 Constraint 427 673 0.8000 1.0000 2.0000 0.0000 Constraint 427 667 0.8000 1.0000 2.0000 0.0000 Constraint 427 660 0.8000 1.0000 2.0000 0.0000 Constraint 427 593 0.8000 1.0000 2.0000 0.0000 Constraint 427 559 0.8000 1.0000 2.0000 0.0000 Constraint 427 483 0.8000 1.0000 2.0000 0.0000 Constraint 427 470 0.8000 1.0000 2.0000 0.0000 Constraint 427 463 0.8000 1.0000 2.0000 0.0000 Constraint 427 455 0.8000 1.0000 2.0000 0.0000 Constraint 427 446 0.8000 1.0000 2.0000 0.0000 Constraint 427 434 0.8000 1.0000 2.0000 0.0000 Constraint 418 691 0.8000 1.0000 2.0000 0.0000 Constraint 418 673 0.8000 1.0000 2.0000 0.0000 Constraint 418 667 0.8000 1.0000 2.0000 0.0000 Constraint 418 610 0.8000 1.0000 2.0000 0.0000 Constraint 418 601 0.8000 1.0000 2.0000 0.0000 Constraint 418 593 0.8000 1.0000 2.0000 0.0000 Constraint 418 584 0.8000 1.0000 2.0000 0.0000 Constraint 418 573 0.8000 1.0000 2.0000 0.0000 Constraint 418 568 0.8000 1.0000 2.0000 0.0000 Constraint 418 559 0.8000 1.0000 2.0000 0.0000 Constraint 418 533 0.8000 1.0000 2.0000 0.0000 Constraint 418 526 0.8000 1.0000 2.0000 0.0000 Constraint 418 517 0.8000 1.0000 2.0000 0.0000 Constraint 418 512 0.8000 1.0000 2.0000 0.0000 Constraint 418 502 0.8000 1.0000 2.0000 0.0000 Constraint 418 491 0.8000 1.0000 2.0000 0.0000 Constraint 418 483 0.8000 1.0000 2.0000 0.0000 Constraint 418 470 0.8000 1.0000 2.0000 0.0000 Constraint 418 463 0.8000 1.0000 2.0000 0.0000 Constraint 418 455 0.8000 1.0000 2.0000 0.0000 Constraint 418 446 0.8000 1.0000 2.0000 0.0000 Constraint 418 434 0.8000 1.0000 2.0000 0.0000 Constraint 418 427 0.8000 1.0000 2.0000 0.0000 Constraint 410 673 0.8000 1.0000 2.0000 0.0000 Constraint 410 615 0.8000 1.0000 2.0000 0.0000 Constraint 410 593 0.8000 1.0000 2.0000 0.0000 Constraint 410 584 0.8000 1.0000 2.0000 0.0000 Constraint 410 573 0.8000 1.0000 2.0000 0.0000 Constraint 410 540 0.8000 1.0000 2.0000 0.0000 Constraint 410 533 0.8000 1.0000 2.0000 0.0000 Constraint 410 526 0.8000 1.0000 2.0000 0.0000 Constraint 410 517 0.8000 1.0000 2.0000 0.0000 Constraint 410 512 0.8000 1.0000 2.0000 0.0000 Constraint 410 502 0.8000 1.0000 2.0000 0.0000 Constraint 410 491 0.8000 1.0000 2.0000 0.0000 Constraint 410 483 0.8000 1.0000 2.0000 0.0000 Constraint 410 470 0.8000 1.0000 2.0000 0.0000 Constraint 410 463 0.8000 1.0000 2.0000 0.0000 Constraint 410 455 0.8000 1.0000 2.0000 0.0000 Constraint 410 446 0.8000 1.0000 2.0000 0.0000 Constraint 410 434 0.8000 1.0000 2.0000 0.0000 Constraint 410 427 0.8000 1.0000 2.0000 0.0000 Constraint 410 418 0.8000 1.0000 2.0000 0.0000 Constraint 402 691 0.8000 1.0000 2.0000 0.0000 Constraint 402 680 0.8000 1.0000 2.0000 0.0000 Constraint 402 673 0.8000 1.0000 2.0000 0.0000 Constraint 402 667 0.8000 1.0000 2.0000 0.0000 Constraint 402 610 0.8000 1.0000 2.0000 0.0000 Constraint 402 601 0.8000 1.0000 2.0000 0.0000 Constraint 402 593 0.8000 1.0000 2.0000 0.0000 Constraint 402 584 0.8000 1.0000 2.0000 0.0000 Constraint 402 573 0.8000 1.0000 2.0000 0.0000 Constraint 402 568 0.8000 1.0000 2.0000 0.0000 Constraint 402 533 0.8000 1.0000 2.0000 0.0000 Constraint 402 463 0.8000 1.0000 2.0000 0.0000 Constraint 402 455 0.8000 1.0000 2.0000 0.0000 Constraint 402 446 0.8000 1.0000 2.0000 0.0000 Constraint 402 434 0.8000 1.0000 2.0000 0.0000 Constraint 402 427 0.8000 1.0000 2.0000 0.0000 Constraint 402 418 0.8000 1.0000 2.0000 0.0000 Constraint 402 410 0.8000 1.0000 2.0000 0.0000 Constraint 391 626 0.8000 1.0000 2.0000 0.0000 Constraint 391 615 0.8000 1.0000 2.0000 0.0000 Constraint 391 610 0.8000 1.0000 2.0000 0.0000 Constraint 391 601 0.8000 1.0000 2.0000 0.0000 Constraint 391 593 0.8000 1.0000 2.0000 0.0000 Constraint 391 584 0.8000 1.0000 2.0000 0.0000 Constraint 391 545 0.8000 1.0000 2.0000 0.0000 Constraint 391 540 0.8000 1.0000 2.0000 0.0000 Constraint 391 533 0.8000 1.0000 2.0000 0.0000 Constraint 391 526 0.8000 1.0000 2.0000 0.0000 Constraint 391 517 0.8000 1.0000 2.0000 0.0000 Constraint 391 512 0.8000 1.0000 2.0000 0.0000 Constraint 391 502 0.8000 1.0000 2.0000 0.0000 Constraint 391 491 0.8000 1.0000 2.0000 0.0000 Constraint 391 483 0.8000 1.0000 2.0000 0.0000 Constraint 391 455 0.8000 1.0000 2.0000 0.0000 Constraint 391 446 0.8000 1.0000 2.0000 0.0000 Constraint 391 434 0.8000 1.0000 2.0000 0.0000 Constraint 391 427 0.8000 1.0000 2.0000 0.0000 Constraint 391 418 0.8000 1.0000 2.0000 0.0000 Constraint 391 410 0.8000 1.0000 2.0000 0.0000 Constraint 391 402 0.8000 1.0000 2.0000 0.0000 Constraint 383 615 0.8000 1.0000 2.0000 0.0000 Constraint 383 610 0.8000 1.0000 2.0000 0.0000 Constraint 383 601 0.8000 1.0000 2.0000 0.0000 Constraint 383 593 0.8000 1.0000 2.0000 0.0000 Constraint 383 584 0.8000 1.0000 2.0000 0.0000 Constraint 383 545 0.8000 1.0000 2.0000 0.0000 Constraint 383 540 0.8000 1.0000 2.0000 0.0000 Constraint 383 533 0.8000 1.0000 2.0000 0.0000 Constraint 383 526 0.8000 1.0000 2.0000 0.0000 Constraint 383 517 0.8000 1.0000 2.0000 0.0000 Constraint 383 512 0.8000 1.0000 2.0000 0.0000 Constraint 383 502 0.8000 1.0000 2.0000 0.0000 Constraint 383 491 0.8000 1.0000 2.0000 0.0000 Constraint 383 483 0.8000 1.0000 2.0000 0.0000 Constraint 383 470 0.8000 1.0000 2.0000 0.0000 Constraint 383 463 0.8000 1.0000 2.0000 0.0000 Constraint 383 455 0.8000 1.0000 2.0000 0.0000 Constraint 383 446 0.8000 1.0000 2.0000 0.0000 Constraint 383 434 0.8000 1.0000 2.0000 0.0000 Constraint 383 427 0.8000 1.0000 2.0000 0.0000 Constraint 383 418 0.8000 1.0000 2.0000 0.0000 Constraint 383 410 0.8000 1.0000 2.0000 0.0000 Constraint 383 402 0.8000 1.0000 2.0000 0.0000 Constraint 383 391 0.8000 1.0000 2.0000 0.0000 Constraint 374 642 0.8000 1.0000 2.0000 0.0000 Constraint 374 634 0.8000 1.0000 2.0000 0.0000 Constraint 374 626 0.8000 1.0000 2.0000 0.0000 Constraint 374 615 0.8000 1.0000 2.0000 0.0000 Constraint 374 610 0.8000 1.0000 2.0000 0.0000 Constraint 374 601 0.8000 1.0000 2.0000 0.0000 Constraint 374 593 0.8000 1.0000 2.0000 0.0000 Constraint 374 559 0.8000 1.0000 2.0000 0.0000 Constraint 374 551 0.8000 1.0000 2.0000 0.0000 Constraint 374 545 0.8000 1.0000 2.0000 0.0000 Constraint 374 540 0.8000 1.0000 2.0000 0.0000 Constraint 374 533 0.8000 1.0000 2.0000 0.0000 Constraint 374 526 0.8000 1.0000 2.0000 0.0000 Constraint 374 517 0.8000 1.0000 2.0000 0.0000 Constraint 374 512 0.8000 1.0000 2.0000 0.0000 Constraint 374 502 0.8000 1.0000 2.0000 0.0000 Constraint 374 491 0.8000 1.0000 2.0000 0.0000 Constraint 374 483 0.8000 1.0000 2.0000 0.0000 Constraint 374 470 0.8000 1.0000 2.0000 0.0000 Constraint 374 463 0.8000 1.0000 2.0000 0.0000 Constraint 374 455 0.8000 1.0000 2.0000 0.0000 Constraint 374 446 0.8000 1.0000 2.0000 0.0000 Constraint 374 434 0.8000 1.0000 2.0000 0.0000 Constraint 374 427 0.8000 1.0000 2.0000 0.0000 Constraint 374 418 0.8000 1.0000 2.0000 0.0000 Constraint 374 410 0.8000 1.0000 2.0000 0.0000 Constraint 374 402 0.8000 1.0000 2.0000 0.0000 Constraint 374 391 0.8000 1.0000 2.0000 0.0000 Constraint 374 383 0.8000 1.0000 2.0000 0.0000 Constraint 369 649 0.8000 1.0000 2.0000 0.0000 Constraint 369 634 0.8000 1.0000 2.0000 0.0000 Constraint 369 626 0.8000 1.0000 2.0000 0.0000 Constraint 369 615 0.8000 1.0000 2.0000 0.0000 Constraint 369 610 0.8000 1.0000 2.0000 0.0000 Constraint 369 601 0.8000 1.0000 2.0000 0.0000 Constraint 369 593 0.8000 1.0000 2.0000 0.0000 Constraint 369 584 0.8000 1.0000 2.0000 0.0000 Constraint 369 573 0.8000 1.0000 2.0000 0.0000 Constraint 369 568 0.8000 1.0000 2.0000 0.0000 Constraint 369 559 0.8000 1.0000 2.0000 0.0000 Constraint 369 551 0.8000 1.0000 2.0000 0.0000 Constraint 369 545 0.8000 1.0000 2.0000 0.0000 Constraint 369 540 0.8000 1.0000 2.0000 0.0000 Constraint 369 533 0.8000 1.0000 2.0000 0.0000 Constraint 369 526 0.8000 1.0000 2.0000 0.0000 Constraint 369 517 0.8000 1.0000 2.0000 0.0000 Constraint 369 512 0.8000 1.0000 2.0000 0.0000 Constraint 369 502 0.8000 1.0000 2.0000 0.0000 Constraint 369 491 0.8000 1.0000 2.0000 0.0000 Constraint 369 483 0.8000 1.0000 2.0000 0.0000 Constraint 369 470 0.8000 1.0000 2.0000 0.0000 Constraint 369 463 0.8000 1.0000 2.0000 0.0000 Constraint 369 455 0.8000 1.0000 2.0000 0.0000 Constraint 369 446 0.8000 1.0000 2.0000 0.0000 Constraint 369 434 0.8000 1.0000 2.0000 0.0000 Constraint 369 427 0.8000 1.0000 2.0000 0.0000 Constraint 369 418 0.8000 1.0000 2.0000 0.0000 Constraint 369 410 0.8000 1.0000 2.0000 0.0000 Constraint 369 402 0.8000 1.0000 2.0000 0.0000 Constraint 369 391 0.8000 1.0000 2.0000 0.0000 Constraint 369 383 0.8000 1.0000 2.0000 0.0000 Constraint 369 374 0.8000 1.0000 2.0000 0.0000 Constraint 358 634 0.8000 1.0000 2.0000 0.0000 Constraint 358 626 0.8000 1.0000 2.0000 0.0000 Constraint 358 615 0.8000 1.0000 2.0000 0.0000 Constraint 358 610 0.8000 1.0000 2.0000 0.0000 Constraint 358 601 0.8000 1.0000 2.0000 0.0000 Constraint 358 593 0.8000 1.0000 2.0000 0.0000 Constraint 358 584 0.8000 1.0000 2.0000 0.0000 Constraint 358 559 0.8000 1.0000 2.0000 0.0000 Constraint 358 551 0.8000 1.0000 2.0000 0.0000 Constraint 358 545 0.8000 1.0000 2.0000 0.0000 Constraint 358 540 0.8000 1.0000 2.0000 0.0000 Constraint 358 533 0.8000 1.0000 2.0000 0.0000 Constraint 358 526 0.8000 1.0000 2.0000 0.0000 Constraint 358 517 0.8000 1.0000 2.0000 0.0000 Constraint 358 512 0.8000 1.0000 2.0000 0.0000 Constraint 358 502 0.8000 1.0000 2.0000 0.0000 Constraint 358 491 0.8000 1.0000 2.0000 0.0000 Constraint 358 483 0.8000 1.0000 2.0000 0.0000 Constraint 358 470 0.8000 1.0000 2.0000 0.0000 Constraint 358 463 0.8000 1.0000 2.0000 0.0000 Constraint 358 455 0.8000 1.0000 2.0000 0.0000 Constraint 358 446 0.8000 1.0000 2.0000 0.0000 Constraint 358 434 0.8000 1.0000 2.0000 0.0000 Constraint 358 427 0.8000 1.0000 2.0000 0.0000 Constraint 358 418 0.8000 1.0000 2.0000 0.0000 Constraint 358 410 0.8000 1.0000 2.0000 0.0000 Constraint 358 402 0.8000 1.0000 2.0000 0.0000 Constraint 358 391 0.8000 1.0000 2.0000 0.0000 Constraint 358 383 0.8000 1.0000 2.0000 0.0000 Constraint 358 374 0.8000 1.0000 2.0000 0.0000 Constraint 358 369 0.8000 1.0000 2.0000 0.0000 Constraint 350 680 0.8000 1.0000 2.0000 0.0000 Constraint 350 673 0.8000 1.0000 2.0000 0.0000 Constraint 350 610 0.8000 1.0000 2.0000 0.0000 Constraint 350 601 0.8000 1.0000 2.0000 0.0000 Constraint 350 593 0.8000 1.0000 2.0000 0.0000 Constraint 350 584 0.8000 1.0000 2.0000 0.0000 Constraint 350 573 0.8000 1.0000 2.0000 0.0000 Constraint 350 568 0.8000 1.0000 2.0000 0.0000 Constraint 350 533 0.8000 1.0000 2.0000 0.0000 Constraint 350 526 0.8000 1.0000 2.0000 0.0000 Constraint 350 517 0.8000 1.0000 2.0000 0.0000 Constraint 350 512 0.8000 1.0000 2.0000 0.0000 Constraint 350 502 0.8000 1.0000 2.0000 0.0000 Constraint 350 491 0.8000 1.0000 2.0000 0.0000 Constraint 350 483 0.8000 1.0000 2.0000 0.0000 Constraint 350 470 0.8000 1.0000 2.0000 0.0000 Constraint 350 463 0.8000 1.0000 2.0000 0.0000 Constraint 350 455 0.8000 1.0000 2.0000 0.0000 Constraint 350 446 0.8000 1.0000 2.0000 0.0000 Constraint 350 434 0.8000 1.0000 2.0000 0.0000 Constraint 350 427 0.8000 1.0000 2.0000 0.0000 Constraint 350 418 0.8000 1.0000 2.0000 0.0000 Constraint 350 410 0.8000 1.0000 2.0000 0.0000 Constraint 350 402 0.8000 1.0000 2.0000 0.0000 Constraint 350 391 0.8000 1.0000 2.0000 0.0000 Constraint 350 383 0.8000 1.0000 2.0000 0.0000 Constraint 350 374 0.8000 1.0000 2.0000 0.0000 Constraint 350 369 0.8000 1.0000 2.0000 0.0000 Constraint 350 358 0.8000 1.0000 2.0000 0.0000 Constraint 340 680 0.8000 1.0000 2.0000 0.0000 Constraint 340 660 0.8000 1.0000 2.0000 0.0000 Constraint 340 601 0.8000 1.0000 2.0000 0.0000 Constraint 340 593 0.8000 1.0000 2.0000 0.0000 Constraint 340 584 0.8000 1.0000 2.0000 0.0000 Constraint 340 573 0.8000 1.0000 2.0000 0.0000 Constraint 340 568 0.8000 1.0000 2.0000 0.0000 Constraint 340 559 0.8000 1.0000 2.0000 0.0000 Constraint 340 551 0.8000 1.0000 2.0000 0.0000 Constraint 340 533 0.8000 1.0000 2.0000 0.0000 Constraint 340 526 0.8000 1.0000 2.0000 0.0000 Constraint 340 517 0.8000 1.0000 2.0000 0.0000 Constraint 340 512 0.8000 1.0000 2.0000 0.0000 Constraint 340 502 0.8000 1.0000 2.0000 0.0000 Constraint 340 491 0.8000 1.0000 2.0000 0.0000 Constraint 340 483 0.8000 1.0000 2.0000 0.0000 Constraint 340 470 0.8000 1.0000 2.0000 0.0000 Constraint 340 463 0.8000 1.0000 2.0000 0.0000 Constraint 340 455 0.8000 1.0000 2.0000 0.0000 Constraint 340 446 0.8000 1.0000 2.0000 0.0000 Constraint 340 434 0.8000 1.0000 2.0000 0.0000 Constraint 340 427 0.8000 1.0000 2.0000 0.0000 Constraint 340 418 0.8000 1.0000 2.0000 0.0000 Constraint 340 410 0.8000 1.0000 2.0000 0.0000 Constraint 340 402 0.8000 1.0000 2.0000 0.0000 Constraint 340 391 0.8000 1.0000 2.0000 0.0000 Constraint 340 383 0.8000 1.0000 2.0000 0.0000 Constraint 340 374 0.8000 1.0000 2.0000 0.0000 Constraint 340 369 0.8000 1.0000 2.0000 0.0000 Constraint 340 358 0.8000 1.0000 2.0000 0.0000 Constraint 340 350 0.8000 1.0000 2.0000 0.0000 Constraint 329 691 0.8000 1.0000 2.0000 0.0000 Constraint 329 667 0.8000 1.0000 2.0000 0.0000 Constraint 329 660 0.8000 1.0000 2.0000 0.0000 Constraint 329 615 0.8000 1.0000 2.0000 0.0000 Constraint 329 610 0.8000 1.0000 2.0000 0.0000 Constraint 329 601 0.8000 1.0000 2.0000 0.0000 Constraint 329 593 0.8000 1.0000 2.0000 0.0000 Constraint 329 584 0.8000 1.0000 2.0000 0.0000 Constraint 329 573 0.8000 1.0000 2.0000 0.0000 Constraint 329 568 0.8000 1.0000 2.0000 0.0000 Constraint 329 559 0.8000 1.0000 2.0000 0.0000 Constraint 329 551 0.8000 1.0000 2.0000 0.0000 Constraint 329 545 0.8000 1.0000 2.0000 0.0000 Constraint 329 540 0.8000 1.0000 2.0000 0.0000 Constraint 329 533 0.8000 1.0000 2.0000 0.0000 Constraint 329 526 0.8000 1.0000 2.0000 0.0000 Constraint 329 517 0.8000 1.0000 2.0000 0.0000 Constraint 329 512 0.8000 1.0000 2.0000 0.0000 Constraint 329 502 0.8000 1.0000 2.0000 0.0000 Constraint 329 491 0.8000 1.0000 2.0000 0.0000 Constraint 329 483 0.8000 1.0000 2.0000 0.0000 Constraint 329 470 0.8000 1.0000 2.0000 0.0000 Constraint 329 463 0.8000 1.0000 2.0000 0.0000 Constraint 329 455 0.8000 1.0000 2.0000 0.0000 Constraint 329 446 0.8000 1.0000 2.0000 0.0000 Constraint 329 434 0.8000 1.0000 2.0000 0.0000 Constraint 329 427 0.8000 1.0000 2.0000 0.0000 Constraint 329 418 0.8000 1.0000 2.0000 0.0000 Constraint 329 410 0.8000 1.0000 2.0000 0.0000 Constraint 329 402 0.8000 1.0000 2.0000 0.0000 Constraint 329 391 0.8000 1.0000 2.0000 0.0000 Constraint 329 383 0.8000 1.0000 2.0000 0.0000 Constraint 329 374 0.8000 1.0000 2.0000 0.0000 Constraint 329 369 0.8000 1.0000 2.0000 0.0000 Constraint 329 358 0.8000 1.0000 2.0000 0.0000 Constraint 329 350 0.8000 1.0000 2.0000 0.0000 Constraint 329 340 0.8000 1.0000 2.0000 0.0000 Constraint 324 691 0.8000 1.0000 2.0000 0.0000 Constraint 324 680 0.8000 1.0000 2.0000 0.0000 Constraint 324 673 0.8000 1.0000 2.0000 0.0000 Constraint 324 667 0.8000 1.0000 2.0000 0.0000 Constraint 324 660 0.8000 1.0000 2.0000 0.0000 Constraint 324 649 0.8000 1.0000 2.0000 0.0000 Constraint 324 642 0.8000 1.0000 2.0000 0.0000 Constraint 324 634 0.8000 1.0000 2.0000 0.0000 Constraint 324 626 0.8000 1.0000 2.0000 0.0000 Constraint 324 615 0.8000 1.0000 2.0000 0.0000 Constraint 324 610 0.8000 1.0000 2.0000 0.0000 Constraint 324 601 0.8000 1.0000 2.0000 0.0000 Constraint 324 593 0.8000 1.0000 2.0000 0.0000 Constraint 324 584 0.8000 1.0000 2.0000 0.0000 Constraint 324 573 0.8000 1.0000 2.0000 0.0000 Constraint 324 568 0.8000 1.0000 2.0000 0.0000 Constraint 324 559 0.8000 1.0000 2.0000 0.0000 Constraint 324 551 0.8000 1.0000 2.0000 0.0000 Constraint 324 545 0.8000 1.0000 2.0000 0.0000 Constraint 324 540 0.8000 1.0000 2.0000 0.0000 Constraint 324 533 0.8000 1.0000 2.0000 0.0000 Constraint 324 526 0.8000 1.0000 2.0000 0.0000 Constraint 324 517 0.8000 1.0000 2.0000 0.0000 Constraint 324 512 0.8000 1.0000 2.0000 0.0000 Constraint 324 502 0.8000 1.0000 2.0000 0.0000 Constraint 324 491 0.8000 1.0000 2.0000 0.0000 Constraint 324 483 0.8000 1.0000 2.0000 0.0000 Constraint 324 470 0.8000 1.0000 2.0000 0.0000 Constraint 324 463 0.8000 1.0000 2.0000 0.0000 Constraint 324 455 0.8000 1.0000 2.0000 0.0000 Constraint 324 446 0.8000 1.0000 2.0000 0.0000 Constraint 324 434 0.8000 1.0000 2.0000 0.0000 Constraint 324 427 0.8000 1.0000 2.0000 0.0000 Constraint 324 418 0.8000 1.0000 2.0000 0.0000 Constraint 324 410 0.8000 1.0000 2.0000 0.0000 Constraint 324 402 0.8000 1.0000 2.0000 0.0000 Constraint 324 391 0.8000 1.0000 2.0000 0.0000 Constraint 324 383 0.8000 1.0000 2.0000 0.0000 Constraint 324 374 0.8000 1.0000 2.0000 0.0000 Constraint 324 369 0.8000 1.0000 2.0000 0.0000 Constraint 324 358 0.8000 1.0000 2.0000 0.0000 Constraint 324 350 0.8000 1.0000 2.0000 0.0000 Constraint 324 340 0.8000 1.0000 2.0000 0.0000 Constraint 324 329 0.8000 1.0000 2.0000 0.0000 Constraint 319 691 0.8000 1.0000 2.0000 0.0000 Constraint 319 680 0.8000 1.0000 2.0000 0.0000 Constraint 319 673 0.8000 1.0000 2.0000 0.0000 Constraint 319 667 0.8000 1.0000 2.0000 0.0000 Constraint 319 660 0.8000 1.0000 2.0000 0.0000 Constraint 319 615 0.8000 1.0000 2.0000 0.0000 Constraint 319 610 0.8000 1.0000 2.0000 0.0000 Constraint 319 601 0.8000 1.0000 2.0000 0.0000 Constraint 319 593 0.8000 1.0000 2.0000 0.0000 Constraint 319 584 0.8000 1.0000 2.0000 0.0000 Constraint 319 573 0.8000 1.0000 2.0000 0.0000 Constraint 319 568 0.8000 1.0000 2.0000 0.0000 Constraint 319 559 0.8000 1.0000 2.0000 0.0000 Constraint 319 551 0.8000 1.0000 2.0000 0.0000 Constraint 319 545 0.8000 1.0000 2.0000 0.0000 Constraint 319 540 0.8000 1.0000 2.0000 0.0000 Constraint 319 533 0.8000 1.0000 2.0000 0.0000 Constraint 319 526 0.8000 1.0000 2.0000 0.0000 Constraint 319 517 0.8000 1.0000 2.0000 0.0000 Constraint 319 512 0.8000 1.0000 2.0000 0.0000 Constraint 319 502 0.8000 1.0000 2.0000 0.0000 Constraint 319 491 0.8000 1.0000 2.0000 0.0000 Constraint 319 483 0.8000 1.0000 2.0000 0.0000 Constraint 319 470 0.8000 1.0000 2.0000 0.0000 Constraint 319 463 0.8000 1.0000 2.0000 0.0000 Constraint 319 455 0.8000 1.0000 2.0000 0.0000 Constraint 319 446 0.8000 1.0000 2.0000 0.0000 Constraint 319 434 0.8000 1.0000 2.0000 0.0000 Constraint 319 427 0.8000 1.0000 2.0000 0.0000 Constraint 319 418 0.8000 1.0000 2.0000 0.0000 Constraint 319 410 0.8000 1.0000 2.0000 0.0000 Constraint 319 402 0.8000 1.0000 2.0000 0.0000 Constraint 319 391 0.8000 1.0000 2.0000 0.0000 Constraint 319 383 0.8000 1.0000 2.0000 0.0000 Constraint 319 374 0.8000 1.0000 2.0000 0.0000 Constraint 319 369 0.8000 1.0000 2.0000 0.0000 Constraint 319 358 0.8000 1.0000 2.0000 0.0000 Constraint 319 350 0.8000 1.0000 2.0000 0.0000 Constraint 319 340 0.8000 1.0000 2.0000 0.0000 Constraint 319 329 0.8000 1.0000 2.0000 0.0000 Constraint 319 324 0.8000 1.0000 2.0000 0.0000 Constraint 312 615 0.8000 1.0000 2.0000 0.0000 Constraint 312 584 0.8000 1.0000 2.0000 0.0000 Constraint 312 573 0.8000 1.0000 2.0000 0.0000 Constraint 312 568 0.8000 1.0000 2.0000 0.0000 Constraint 312 559 0.8000 1.0000 2.0000 0.0000 Constraint 312 551 0.8000 1.0000 2.0000 0.0000 Constraint 312 545 0.8000 1.0000 2.0000 0.0000 Constraint 312 540 0.8000 1.0000 2.0000 0.0000 Constraint 312 533 0.8000 1.0000 2.0000 0.0000 Constraint 312 526 0.8000 1.0000 2.0000 0.0000 Constraint 312 517 0.8000 1.0000 2.0000 0.0000 Constraint 312 512 0.8000 1.0000 2.0000 0.0000 Constraint 312 502 0.8000 1.0000 2.0000 0.0000 Constraint 312 491 0.8000 1.0000 2.0000 0.0000 Constraint 312 483 0.8000 1.0000 2.0000 0.0000 Constraint 312 470 0.8000 1.0000 2.0000 0.0000 Constraint 312 463 0.8000 1.0000 2.0000 0.0000 Constraint 312 455 0.8000 1.0000 2.0000 0.0000 Constraint 312 446 0.8000 1.0000 2.0000 0.0000 Constraint 312 434 0.8000 1.0000 2.0000 0.0000 Constraint 312 427 0.8000 1.0000 2.0000 0.0000 Constraint 312 418 0.8000 1.0000 2.0000 0.0000 Constraint 312 410 0.8000 1.0000 2.0000 0.0000 Constraint 312 402 0.8000 1.0000 2.0000 0.0000 Constraint 312 391 0.8000 1.0000 2.0000 0.0000 Constraint 312 383 0.8000 1.0000 2.0000 0.0000 Constraint 312 374 0.8000 1.0000 2.0000 0.0000 Constraint 312 369 0.8000 1.0000 2.0000 0.0000 Constraint 312 358 0.8000 1.0000 2.0000 0.0000 Constraint 312 350 0.8000 1.0000 2.0000 0.0000 Constraint 312 340 0.8000 1.0000 2.0000 0.0000 Constraint 312 329 0.8000 1.0000 2.0000 0.0000 Constraint 312 324 0.8000 1.0000 2.0000 0.0000 Constraint 312 319 0.8000 1.0000 2.0000 0.0000 Constraint 306 691 0.8000 1.0000 2.0000 0.0000 Constraint 306 680 0.8000 1.0000 2.0000 0.0000 Constraint 306 673 0.8000 1.0000 2.0000 0.0000 Constraint 306 642 0.8000 1.0000 2.0000 0.0000 Constraint 306 634 0.8000 1.0000 2.0000 0.0000 Constraint 306 626 0.8000 1.0000 2.0000 0.0000 Constraint 306 615 0.8000 1.0000 2.0000 0.0000 Constraint 306 610 0.8000 1.0000 2.0000 0.0000 Constraint 306 601 0.8000 1.0000 2.0000 0.0000 Constraint 306 593 0.8000 1.0000 2.0000 0.0000 Constraint 306 584 0.8000 1.0000 2.0000 0.0000 Constraint 306 573 0.8000 1.0000 2.0000 0.0000 Constraint 306 568 0.8000 1.0000 2.0000 0.0000 Constraint 306 559 0.8000 1.0000 2.0000 0.0000 Constraint 306 551 0.8000 1.0000 2.0000 0.0000 Constraint 306 545 0.8000 1.0000 2.0000 0.0000 Constraint 306 540 0.8000 1.0000 2.0000 0.0000 Constraint 306 533 0.8000 1.0000 2.0000 0.0000 Constraint 306 526 0.8000 1.0000 2.0000 0.0000 Constraint 306 517 0.8000 1.0000 2.0000 0.0000 Constraint 306 512 0.8000 1.0000 2.0000 0.0000 Constraint 306 502 0.8000 1.0000 2.0000 0.0000 Constraint 306 491 0.8000 1.0000 2.0000 0.0000 Constraint 306 483 0.8000 1.0000 2.0000 0.0000 Constraint 306 470 0.8000 1.0000 2.0000 0.0000 Constraint 306 463 0.8000 1.0000 2.0000 0.0000 Constraint 306 455 0.8000 1.0000 2.0000 0.0000 Constraint 306 446 0.8000 1.0000 2.0000 0.0000 Constraint 306 434 0.8000 1.0000 2.0000 0.0000 Constraint 306 427 0.8000 1.0000 2.0000 0.0000 Constraint 306 418 0.8000 1.0000 2.0000 0.0000 Constraint 306 410 0.8000 1.0000 2.0000 0.0000 Constraint 306 402 0.8000 1.0000 2.0000 0.0000 Constraint 306 391 0.8000 1.0000 2.0000 0.0000 Constraint 306 383 0.8000 1.0000 2.0000 0.0000 Constraint 306 374 0.8000 1.0000 2.0000 0.0000 Constraint 306 369 0.8000 1.0000 2.0000 0.0000 Constraint 306 358 0.8000 1.0000 2.0000 0.0000 Constraint 306 350 0.8000 1.0000 2.0000 0.0000 Constraint 306 340 0.8000 1.0000 2.0000 0.0000 Constraint 306 329 0.8000 1.0000 2.0000 0.0000 Constraint 306 324 0.8000 1.0000 2.0000 0.0000 Constraint 306 319 0.8000 1.0000 2.0000 0.0000 Constraint 306 312 0.8000 1.0000 2.0000 0.0000 Constraint 295 691 0.8000 1.0000 2.0000 0.0000 Constraint 295 680 0.8000 1.0000 2.0000 0.0000 Constraint 295 673 0.8000 1.0000 2.0000 0.0000 Constraint 295 667 0.8000 1.0000 2.0000 0.0000 Constraint 295 660 0.8000 1.0000 2.0000 0.0000 Constraint 295 649 0.8000 1.0000 2.0000 0.0000 Constraint 295 642 0.8000 1.0000 2.0000 0.0000 Constraint 295 634 0.8000 1.0000 2.0000 0.0000 Constraint 295 626 0.8000 1.0000 2.0000 0.0000 Constraint 295 615 0.8000 1.0000 2.0000 0.0000 Constraint 295 610 0.8000 1.0000 2.0000 0.0000 Constraint 295 601 0.8000 1.0000 2.0000 0.0000 Constraint 295 593 0.8000 1.0000 2.0000 0.0000 Constraint 295 584 0.8000 1.0000 2.0000 0.0000 Constraint 295 573 0.8000 1.0000 2.0000 0.0000 Constraint 295 568 0.8000 1.0000 2.0000 0.0000 Constraint 295 559 0.8000 1.0000 2.0000 0.0000 Constraint 295 551 0.8000 1.0000 2.0000 0.0000 Constraint 295 545 0.8000 1.0000 2.0000 0.0000 Constraint 295 540 0.8000 1.0000 2.0000 0.0000 Constraint 295 533 0.8000 1.0000 2.0000 0.0000 Constraint 295 526 0.8000 1.0000 2.0000 0.0000 Constraint 295 517 0.8000 1.0000 2.0000 0.0000 Constraint 295 512 0.8000 1.0000 2.0000 0.0000 Constraint 295 502 0.8000 1.0000 2.0000 0.0000 Constraint 295 491 0.8000 1.0000 2.0000 0.0000 Constraint 295 483 0.8000 1.0000 2.0000 0.0000 Constraint 295 470 0.8000 1.0000 2.0000 0.0000 Constraint 295 463 0.8000 1.0000 2.0000 0.0000 Constraint 295 455 0.8000 1.0000 2.0000 0.0000 Constraint 295 446 0.8000 1.0000 2.0000 0.0000 Constraint 295 434 0.8000 1.0000 2.0000 0.0000 Constraint 295 427 0.8000 1.0000 2.0000 0.0000 Constraint 295 418 0.8000 1.0000 2.0000 0.0000 Constraint 295 410 0.8000 1.0000 2.0000 0.0000 Constraint 295 402 0.8000 1.0000 2.0000 0.0000 Constraint 295 391 0.8000 1.0000 2.0000 0.0000 Constraint 295 383 0.8000 1.0000 2.0000 0.0000 Constraint 295 374 0.8000 1.0000 2.0000 0.0000 Constraint 295 369 0.8000 1.0000 2.0000 0.0000 Constraint 295 358 0.8000 1.0000 2.0000 0.0000 Constraint 295 350 0.8000 1.0000 2.0000 0.0000 Constraint 295 340 0.8000 1.0000 2.0000 0.0000 Constraint 295 329 0.8000 1.0000 2.0000 0.0000 Constraint 295 324 0.8000 1.0000 2.0000 0.0000 Constraint 295 319 0.8000 1.0000 2.0000 0.0000 Constraint 295 312 0.8000 1.0000 2.0000 0.0000 Constraint 295 306 0.8000 1.0000 2.0000 0.0000 Constraint 287 691 0.8000 1.0000 2.0000 0.0000 Constraint 287 680 0.8000 1.0000 2.0000 0.0000 Constraint 287 673 0.8000 1.0000 2.0000 0.0000 Constraint 287 667 0.8000 1.0000 2.0000 0.0000 Constraint 287 660 0.8000 1.0000 2.0000 0.0000 Constraint 287 649 0.8000 1.0000 2.0000 0.0000 Constraint 287 642 0.8000 1.0000 2.0000 0.0000 Constraint 287 634 0.8000 1.0000 2.0000 0.0000 Constraint 287 626 0.8000 1.0000 2.0000 0.0000 Constraint 287 615 0.8000 1.0000 2.0000 0.0000 Constraint 287 610 0.8000 1.0000 2.0000 0.0000 Constraint 287 601 0.8000 1.0000 2.0000 0.0000 Constraint 287 593 0.8000 1.0000 2.0000 0.0000 Constraint 287 584 0.8000 1.0000 2.0000 0.0000 Constraint 287 573 0.8000 1.0000 2.0000 0.0000 Constraint 287 568 0.8000 1.0000 2.0000 0.0000 Constraint 287 559 0.8000 1.0000 2.0000 0.0000 Constraint 287 551 0.8000 1.0000 2.0000 0.0000 Constraint 287 545 0.8000 1.0000 2.0000 0.0000 Constraint 287 540 0.8000 1.0000 2.0000 0.0000 Constraint 287 533 0.8000 1.0000 2.0000 0.0000 Constraint 287 526 0.8000 1.0000 2.0000 0.0000 Constraint 287 517 0.8000 1.0000 2.0000 0.0000 Constraint 287 512 0.8000 1.0000 2.0000 0.0000 Constraint 287 502 0.8000 1.0000 2.0000 0.0000 Constraint 287 491 0.8000 1.0000 2.0000 0.0000 Constraint 287 483 0.8000 1.0000 2.0000 0.0000 Constraint 287 470 0.8000 1.0000 2.0000 0.0000 Constraint 287 463 0.8000 1.0000 2.0000 0.0000 Constraint 287 455 0.8000 1.0000 2.0000 0.0000 Constraint 287 446 0.8000 1.0000 2.0000 0.0000 Constraint 287 434 0.8000 1.0000 2.0000 0.0000 Constraint 287 427 0.8000 1.0000 2.0000 0.0000 Constraint 287 418 0.8000 1.0000 2.0000 0.0000 Constraint 287 410 0.8000 1.0000 2.0000 0.0000 Constraint 287 402 0.8000 1.0000 2.0000 0.0000 Constraint 287 391 0.8000 1.0000 2.0000 0.0000 Constraint 287 383 0.8000 1.0000 2.0000 0.0000 Constraint 287 374 0.8000 1.0000 2.0000 0.0000 Constraint 287 358 0.8000 1.0000 2.0000 0.0000 Constraint 287 340 0.8000 1.0000 2.0000 0.0000 Constraint 287 329 0.8000 1.0000 2.0000 0.0000 Constraint 287 324 0.8000 1.0000 2.0000 0.0000 Constraint 287 319 0.8000 1.0000 2.0000 0.0000 Constraint 287 312 0.8000 1.0000 2.0000 0.0000 Constraint 287 306 0.8000 1.0000 2.0000 0.0000 Constraint 287 295 0.8000 1.0000 2.0000 0.0000 Constraint 280 691 0.8000 1.0000 2.0000 0.0000 Constraint 280 680 0.8000 1.0000 2.0000 0.0000 Constraint 280 673 0.8000 1.0000 2.0000 0.0000 Constraint 280 667 0.8000 1.0000 2.0000 0.0000 Constraint 280 660 0.8000 1.0000 2.0000 0.0000 Constraint 280 649 0.8000 1.0000 2.0000 0.0000 Constraint 280 642 0.8000 1.0000 2.0000 0.0000 Constraint 280 634 0.8000 1.0000 2.0000 0.0000 Constraint 280 601 0.8000 1.0000 2.0000 0.0000 Constraint 280 593 0.8000 1.0000 2.0000 0.0000 Constraint 280 584 0.8000 1.0000 2.0000 0.0000 Constraint 280 573 0.8000 1.0000 2.0000 0.0000 Constraint 280 568 0.8000 1.0000 2.0000 0.0000 Constraint 280 559 0.8000 1.0000 2.0000 0.0000 Constraint 280 551 0.8000 1.0000 2.0000 0.0000 Constraint 280 545 0.8000 1.0000 2.0000 0.0000 Constraint 280 540 0.8000 1.0000 2.0000 0.0000 Constraint 280 533 0.8000 1.0000 2.0000 0.0000 Constraint 280 526 0.8000 1.0000 2.0000 0.0000 Constraint 280 512 0.8000 1.0000 2.0000 0.0000 Constraint 280 491 0.8000 1.0000 2.0000 0.0000 Constraint 280 483 0.8000 1.0000 2.0000 0.0000 Constraint 280 470 0.8000 1.0000 2.0000 0.0000 Constraint 280 463 0.8000 1.0000 2.0000 0.0000 Constraint 280 455 0.8000 1.0000 2.0000 0.0000 Constraint 280 446 0.8000 1.0000 2.0000 0.0000 Constraint 280 434 0.8000 1.0000 2.0000 0.0000 Constraint 280 427 0.8000 1.0000 2.0000 0.0000 Constraint 280 418 0.8000 1.0000 2.0000 0.0000 Constraint 280 410 0.8000 1.0000 2.0000 0.0000 Constraint 280 402 0.8000 1.0000 2.0000 0.0000 Constraint 280 391 0.8000 1.0000 2.0000 0.0000 Constraint 280 374 0.8000 1.0000 2.0000 0.0000 Constraint 280 329 0.8000 1.0000 2.0000 0.0000 Constraint 280 324 0.8000 1.0000 2.0000 0.0000 Constraint 280 319 0.8000 1.0000 2.0000 0.0000 Constraint 280 312 0.8000 1.0000 2.0000 0.0000 Constraint 280 306 0.8000 1.0000 2.0000 0.0000 Constraint 280 295 0.8000 1.0000 2.0000 0.0000 Constraint 280 287 0.8000 1.0000 2.0000 0.0000 Constraint 274 691 0.8000 1.0000 2.0000 0.0000 Constraint 274 680 0.8000 1.0000 2.0000 0.0000 Constraint 274 673 0.8000 1.0000 2.0000 0.0000 Constraint 274 667 0.8000 1.0000 2.0000 0.0000 Constraint 274 660 0.8000 1.0000 2.0000 0.0000 Constraint 274 649 0.8000 1.0000 2.0000 0.0000 Constraint 274 634 0.8000 1.0000 2.0000 0.0000 Constraint 274 610 0.8000 1.0000 2.0000 0.0000 Constraint 274 601 0.8000 1.0000 2.0000 0.0000 Constraint 274 593 0.8000 1.0000 2.0000 0.0000 Constraint 274 584 0.8000 1.0000 2.0000 0.0000 Constraint 274 573 0.8000 1.0000 2.0000 0.0000 Constraint 274 568 0.8000 1.0000 2.0000 0.0000 Constraint 274 559 0.8000 1.0000 2.0000 0.0000 Constraint 274 551 0.8000 1.0000 2.0000 0.0000 Constraint 274 545 0.8000 1.0000 2.0000 0.0000 Constraint 274 540 0.8000 1.0000 2.0000 0.0000 Constraint 274 533 0.8000 1.0000 2.0000 0.0000 Constraint 274 526 0.8000 1.0000 2.0000 0.0000 Constraint 274 517 0.8000 1.0000 2.0000 0.0000 Constraint 274 512 0.8000 1.0000 2.0000 0.0000 Constraint 274 502 0.8000 1.0000 2.0000 0.0000 Constraint 274 491 0.8000 1.0000 2.0000 0.0000 Constraint 274 483 0.8000 1.0000 2.0000 0.0000 Constraint 274 470 0.8000 1.0000 2.0000 0.0000 Constraint 274 463 0.8000 1.0000 2.0000 0.0000 Constraint 274 455 0.8000 1.0000 2.0000 0.0000 Constraint 274 446 0.8000 1.0000 2.0000 0.0000 Constraint 274 434 0.8000 1.0000 2.0000 0.0000 Constraint 274 427 0.8000 1.0000 2.0000 0.0000 Constraint 274 418 0.8000 1.0000 2.0000 0.0000 Constraint 274 410 0.8000 1.0000 2.0000 0.0000 Constraint 274 402 0.8000 1.0000 2.0000 0.0000 Constraint 274 391 0.8000 1.0000 2.0000 0.0000 Constraint 274 383 0.8000 1.0000 2.0000 0.0000 Constraint 274 374 0.8000 1.0000 2.0000 0.0000 Constraint 274 340 0.8000 1.0000 2.0000 0.0000 Constraint 274 324 0.8000 1.0000 2.0000 0.0000 Constraint 274 319 0.8000 1.0000 2.0000 0.0000 Constraint 274 312 0.8000 1.0000 2.0000 0.0000 Constraint 274 306 0.8000 1.0000 2.0000 0.0000 Constraint 274 295 0.8000 1.0000 2.0000 0.0000 Constraint 274 287 0.8000 1.0000 2.0000 0.0000 Constraint 274 280 0.8000 1.0000 2.0000 0.0000 Constraint 263 673 0.8000 1.0000 2.0000 0.0000 Constraint 263 667 0.8000 1.0000 2.0000 0.0000 Constraint 263 660 0.8000 1.0000 2.0000 0.0000 Constraint 263 649 0.8000 1.0000 2.0000 0.0000 Constraint 263 610 0.8000 1.0000 2.0000 0.0000 Constraint 263 601 0.8000 1.0000 2.0000 0.0000 Constraint 263 593 0.8000 1.0000 2.0000 0.0000 Constraint 263 584 0.8000 1.0000 2.0000 0.0000 Constraint 263 573 0.8000 1.0000 2.0000 0.0000 Constraint 263 568 0.8000 1.0000 2.0000 0.0000 Constraint 263 559 0.8000 1.0000 2.0000 0.0000 Constraint 263 551 0.8000 1.0000 2.0000 0.0000 Constraint 263 545 0.8000 1.0000 2.0000 0.0000 Constraint 263 540 0.8000 1.0000 2.0000 0.0000 Constraint 263 533 0.8000 1.0000 2.0000 0.0000 Constraint 263 526 0.8000 1.0000 2.0000 0.0000 Constraint 263 517 0.8000 1.0000 2.0000 0.0000 Constraint 263 512 0.8000 1.0000 2.0000 0.0000 Constraint 263 491 0.8000 1.0000 2.0000 0.0000 Constraint 263 483 0.8000 1.0000 2.0000 0.0000 Constraint 263 463 0.8000 1.0000 2.0000 0.0000 Constraint 263 446 0.8000 1.0000 2.0000 0.0000 Constraint 263 434 0.8000 1.0000 2.0000 0.0000 Constraint 263 427 0.8000 1.0000 2.0000 0.0000 Constraint 263 418 0.8000 1.0000 2.0000 0.0000 Constraint 263 410 0.8000 1.0000 2.0000 0.0000 Constraint 263 402 0.8000 1.0000 2.0000 0.0000 Constraint 263 391 0.8000 1.0000 2.0000 0.0000 Constraint 263 383 0.8000 1.0000 2.0000 0.0000 Constraint 263 358 0.8000 1.0000 2.0000 0.0000 Constraint 263 350 0.8000 1.0000 2.0000 0.0000 Constraint 263 340 0.8000 1.0000 2.0000 0.0000 Constraint 263 324 0.8000 1.0000 2.0000 0.0000 Constraint 263 319 0.8000 1.0000 2.0000 0.0000 Constraint 263 312 0.8000 1.0000 2.0000 0.0000 Constraint 263 306 0.8000 1.0000 2.0000 0.0000 Constraint 263 295 0.8000 1.0000 2.0000 0.0000 Constraint 263 287 0.8000 1.0000 2.0000 0.0000 Constraint 263 280 0.8000 1.0000 2.0000 0.0000 Constraint 263 274 0.8000 1.0000 2.0000 0.0000 Constraint 255 680 0.8000 1.0000 2.0000 0.0000 Constraint 255 673 0.8000 1.0000 2.0000 0.0000 Constraint 255 615 0.8000 1.0000 2.0000 0.0000 Constraint 255 610 0.8000 1.0000 2.0000 0.0000 Constraint 255 601 0.8000 1.0000 2.0000 0.0000 Constraint 255 593 0.8000 1.0000 2.0000 0.0000 Constraint 255 584 0.8000 1.0000 2.0000 0.0000 Constraint 255 573 0.8000 1.0000 2.0000 0.0000 Constraint 255 568 0.8000 1.0000 2.0000 0.0000 Constraint 255 545 0.8000 1.0000 2.0000 0.0000 Constraint 255 540 0.8000 1.0000 2.0000 0.0000 Constraint 255 533 0.8000 1.0000 2.0000 0.0000 Constraint 255 526 0.8000 1.0000 2.0000 0.0000 Constraint 255 517 0.8000 1.0000 2.0000 0.0000 Constraint 255 512 0.8000 1.0000 2.0000 0.0000 Constraint 255 502 0.8000 1.0000 2.0000 0.0000 Constraint 255 491 0.8000 1.0000 2.0000 0.0000 Constraint 255 483 0.8000 1.0000 2.0000 0.0000 Constraint 255 470 0.8000 1.0000 2.0000 0.0000 Constraint 255 463 0.8000 1.0000 2.0000 0.0000 Constraint 255 455 0.8000 1.0000 2.0000 0.0000 Constraint 255 446 0.8000 1.0000 2.0000 0.0000 Constraint 255 434 0.8000 1.0000 2.0000 0.0000 Constraint 255 427 0.8000 1.0000 2.0000 0.0000 Constraint 255 418 0.8000 1.0000 2.0000 0.0000 Constraint 255 410 0.8000 1.0000 2.0000 0.0000 Constraint 255 340 0.8000 1.0000 2.0000 0.0000 Constraint 255 324 0.8000 1.0000 2.0000 0.0000 Constraint 255 312 0.8000 1.0000 2.0000 0.0000 Constraint 255 306 0.8000 1.0000 2.0000 0.0000 Constraint 255 295 0.8000 1.0000 2.0000 0.0000 Constraint 255 287 0.8000 1.0000 2.0000 0.0000 Constraint 255 280 0.8000 1.0000 2.0000 0.0000 Constraint 255 274 0.8000 1.0000 2.0000 0.0000 Constraint 255 263 0.8000 1.0000 2.0000 0.0000 Constraint 243 634 0.8000 1.0000 2.0000 0.0000 Constraint 243 626 0.8000 1.0000 2.0000 0.0000 Constraint 243 615 0.8000 1.0000 2.0000 0.0000 Constraint 243 610 0.8000 1.0000 2.0000 0.0000 Constraint 243 601 0.8000 1.0000 2.0000 0.0000 Constraint 243 593 0.8000 1.0000 2.0000 0.0000 Constraint 243 584 0.8000 1.0000 2.0000 0.0000 Constraint 243 573 0.8000 1.0000 2.0000 0.0000 Constraint 243 568 0.8000 1.0000 2.0000 0.0000 Constraint 243 559 0.8000 1.0000 2.0000 0.0000 Constraint 243 551 0.8000 1.0000 2.0000 0.0000 Constraint 243 545 0.8000 1.0000 2.0000 0.0000 Constraint 243 540 0.8000 1.0000 2.0000 0.0000 Constraint 243 533 0.8000 1.0000 2.0000 0.0000 Constraint 243 526 0.8000 1.0000 2.0000 0.0000 Constraint 243 517 0.8000 1.0000 2.0000 0.0000 Constraint 243 512 0.8000 1.0000 2.0000 0.0000 Constraint 243 491 0.8000 1.0000 2.0000 0.0000 Constraint 243 470 0.8000 1.0000 2.0000 0.0000 Constraint 243 463 0.8000 1.0000 2.0000 0.0000 Constraint 243 455 0.8000 1.0000 2.0000 0.0000 Constraint 243 446 0.8000 1.0000 2.0000 0.0000 Constraint 243 434 0.8000 1.0000 2.0000 0.0000 Constraint 243 427 0.8000 1.0000 2.0000 0.0000 Constraint 243 418 0.8000 1.0000 2.0000 0.0000 Constraint 243 410 0.8000 1.0000 2.0000 0.0000 Constraint 243 340 0.8000 1.0000 2.0000 0.0000 Constraint 243 329 0.8000 1.0000 2.0000 0.0000 Constraint 243 324 0.8000 1.0000 2.0000 0.0000 Constraint 243 319 0.8000 1.0000 2.0000 0.0000 Constraint 243 312 0.8000 1.0000 2.0000 0.0000 Constraint 243 306 0.8000 1.0000 2.0000 0.0000 Constraint 243 295 0.8000 1.0000 2.0000 0.0000 Constraint 243 287 0.8000 1.0000 2.0000 0.0000 Constraint 243 280 0.8000 1.0000 2.0000 0.0000 Constraint 243 274 0.8000 1.0000 2.0000 0.0000 Constraint 243 263 0.8000 1.0000 2.0000 0.0000 Constraint 243 255 0.8000 1.0000 2.0000 0.0000 Constraint 234 691 0.8000 1.0000 2.0000 0.0000 Constraint 234 680 0.8000 1.0000 2.0000 0.0000 Constraint 234 673 0.8000 1.0000 2.0000 0.0000 Constraint 234 667 0.8000 1.0000 2.0000 0.0000 Constraint 234 660 0.8000 1.0000 2.0000 0.0000 Constraint 234 649 0.8000 1.0000 2.0000 0.0000 Constraint 234 642 0.8000 1.0000 2.0000 0.0000 Constraint 234 634 0.8000 1.0000 2.0000 0.0000 Constraint 234 626 0.8000 1.0000 2.0000 0.0000 Constraint 234 615 0.8000 1.0000 2.0000 0.0000 Constraint 234 610 0.8000 1.0000 2.0000 0.0000 Constraint 234 601 0.8000 1.0000 2.0000 0.0000 Constraint 234 593 0.8000 1.0000 2.0000 0.0000 Constraint 234 584 0.8000 1.0000 2.0000 0.0000 Constraint 234 573 0.8000 1.0000 2.0000 0.0000 Constraint 234 568 0.8000 1.0000 2.0000 0.0000 Constraint 234 559 0.8000 1.0000 2.0000 0.0000 Constraint 234 540 0.8000 1.0000 2.0000 0.0000 Constraint 234 455 0.8000 1.0000 2.0000 0.0000 Constraint 234 446 0.8000 1.0000 2.0000 0.0000 Constraint 234 434 0.8000 1.0000 2.0000 0.0000 Constraint 234 418 0.8000 1.0000 2.0000 0.0000 Constraint 234 369 0.8000 1.0000 2.0000 0.0000 Constraint 234 358 0.8000 1.0000 2.0000 0.0000 Constraint 234 350 0.8000 1.0000 2.0000 0.0000 Constraint 234 340 0.8000 1.0000 2.0000 0.0000 Constraint 234 329 0.8000 1.0000 2.0000 0.0000 Constraint 234 324 0.8000 1.0000 2.0000 0.0000 Constraint 234 319 0.8000 1.0000 2.0000 0.0000 Constraint 234 312 0.8000 1.0000 2.0000 0.0000 Constraint 234 306 0.8000 1.0000 2.0000 0.0000 Constraint 234 295 0.8000 1.0000 2.0000 0.0000 Constraint 234 287 0.8000 1.0000 2.0000 0.0000 Constraint 234 280 0.8000 1.0000 2.0000 0.0000 Constraint 234 274 0.8000 1.0000 2.0000 0.0000 Constraint 234 263 0.8000 1.0000 2.0000 0.0000 Constraint 234 255 0.8000 1.0000 2.0000 0.0000 Constraint 234 243 0.8000 1.0000 2.0000 0.0000 Constraint 223 691 0.8000 1.0000 2.0000 0.0000 Constraint 223 667 0.8000 1.0000 2.0000 0.0000 Constraint 223 642 0.8000 1.0000 2.0000 0.0000 Constraint 223 634 0.8000 1.0000 2.0000 0.0000 Constraint 223 626 0.8000 1.0000 2.0000 0.0000 Constraint 223 615 0.8000 1.0000 2.0000 0.0000 Constraint 223 610 0.8000 1.0000 2.0000 0.0000 Constraint 223 601 0.8000 1.0000 2.0000 0.0000 Constraint 223 593 0.8000 1.0000 2.0000 0.0000 Constraint 223 584 0.8000 1.0000 2.0000 0.0000 Constraint 223 573 0.8000 1.0000 2.0000 0.0000 Constraint 223 568 0.8000 1.0000 2.0000 0.0000 Constraint 223 559 0.8000 1.0000 2.0000 0.0000 Constraint 223 551 0.8000 1.0000 2.0000 0.0000 Constraint 223 545 0.8000 1.0000 2.0000 0.0000 Constraint 223 540 0.8000 1.0000 2.0000 0.0000 Constraint 223 533 0.8000 1.0000 2.0000 0.0000 Constraint 223 526 0.8000 1.0000 2.0000 0.0000 Constraint 223 517 0.8000 1.0000 2.0000 0.0000 Constraint 223 512 0.8000 1.0000 2.0000 0.0000 Constraint 223 446 0.8000 1.0000 2.0000 0.0000 Constraint 223 434 0.8000 1.0000 2.0000 0.0000 Constraint 223 427 0.8000 1.0000 2.0000 0.0000 Constraint 223 418 0.8000 1.0000 2.0000 0.0000 Constraint 223 369 0.8000 1.0000 2.0000 0.0000 Constraint 223 358 0.8000 1.0000 2.0000 0.0000 Constraint 223 350 0.8000 1.0000 2.0000 0.0000 Constraint 223 340 0.8000 1.0000 2.0000 0.0000 Constraint 223 329 0.8000 1.0000 2.0000 0.0000 Constraint 223 324 0.8000 1.0000 2.0000 0.0000 Constraint 223 319 0.8000 1.0000 2.0000 0.0000 Constraint 223 312 0.8000 1.0000 2.0000 0.0000 Constraint 223 306 0.8000 1.0000 2.0000 0.0000 Constraint 223 295 0.8000 1.0000 2.0000 0.0000 Constraint 223 287 0.8000 1.0000 2.0000 0.0000 Constraint 223 280 0.8000 1.0000 2.0000 0.0000 Constraint 223 274 0.8000 1.0000 2.0000 0.0000 Constraint 223 263 0.8000 1.0000 2.0000 0.0000 Constraint 223 255 0.8000 1.0000 2.0000 0.0000 Constraint 223 243 0.8000 1.0000 2.0000 0.0000 Constraint 223 234 0.8000 1.0000 2.0000 0.0000 Constraint 212 680 0.8000 1.0000 2.0000 0.0000 Constraint 212 673 0.8000 1.0000 2.0000 0.0000 Constraint 212 642 0.8000 1.0000 2.0000 0.0000 Constraint 212 634 0.8000 1.0000 2.0000 0.0000 Constraint 212 626 0.8000 1.0000 2.0000 0.0000 Constraint 212 615 0.8000 1.0000 2.0000 0.0000 Constraint 212 610 0.8000 1.0000 2.0000 0.0000 Constraint 212 601 0.8000 1.0000 2.0000 0.0000 Constraint 212 593 0.8000 1.0000 2.0000 0.0000 Constraint 212 584 0.8000 1.0000 2.0000 0.0000 Constraint 212 573 0.8000 1.0000 2.0000 0.0000 Constraint 212 568 0.8000 1.0000 2.0000 0.0000 Constraint 212 559 0.8000 1.0000 2.0000 0.0000 Constraint 212 551 0.8000 1.0000 2.0000 0.0000 Constraint 212 545 0.8000 1.0000 2.0000 0.0000 Constraint 212 540 0.8000 1.0000 2.0000 0.0000 Constraint 212 533 0.8000 1.0000 2.0000 0.0000 Constraint 212 517 0.8000 1.0000 2.0000 0.0000 Constraint 212 446 0.8000 1.0000 2.0000 0.0000 Constraint 212 434 0.8000 1.0000 2.0000 0.0000 Constraint 212 427 0.8000 1.0000 2.0000 0.0000 Constraint 212 418 0.8000 1.0000 2.0000 0.0000 Constraint 212 383 0.8000 1.0000 2.0000 0.0000 Constraint 212 374 0.8000 1.0000 2.0000 0.0000 Constraint 212 369 0.8000 1.0000 2.0000 0.0000 Constraint 212 358 0.8000 1.0000 2.0000 0.0000 Constraint 212 350 0.8000 1.0000 2.0000 0.0000 Constraint 212 340 0.8000 1.0000 2.0000 0.0000 Constraint 212 329 0.8000 1.0000 2.0000 0.0000 Constraint 212 324 0.8000 1.0000 2.0000 0.0000 Constraint 212 319 0.8000 1.0000 2.0000 0.0000 Constraint 212 312 0.8000 1.0000 2.0000 0.0000 Constraint 212 306 0.8000 1.0000 2.0000 0.0000 Constraint 212 295 0.8000 1.0000 2.0000 0.0000 Constraint 212 287 0.8000 1.0000 2.0000 0.0000 Constraint 212 280 0.8000 1.0000 2.0000 0.0000 Constraint 212 274 0.8000 1.0000 2.0000 0.0000 Constraint 212 263 0.8000 1.0000 2.0000 0.0000 Constraint 212 255 0.8000 1.0000 2.0000 0.0000 Constraint 212 243 0.8000 1.0000 2.0000 0.0000 Constraint 212 234 0.8000 1.0000 2.0000 0.0000 Constraint 212 223 0.8000 1.0000 2.0000 0.0000 Constraint 206 691 0.8000 1.0000 2.0000 0.0000 Constraint 206 680 0.8000 1.0000 2.0000 0.0000 Constraint 206 673 0.8000 1.0000 2.0000 0.0000 Constraint 206 626 0.8000 1.0000 2.0000 0.0000 Constraint 206 615 0.8000 1.0000 2.0000 0.0000 Constraint 206 610 0.8000 1.0000 2.0000 0.0000 Constraint 206 601 0.8000 1.0000 2.0000 0.0000 Constraint 206 593 0.8000 1.0000 2.0000 0.0000 Constraint 206 584 0.8000 1.0000 2.0000 0.0000 Constraint 206 573 0.8000 1.0000 2.0000 0.0000 Constraint 206 551 0.8000 1.0000 2.0000 0.0000 Constraint 206 545 0.8000 1.0000 2.0000 0.0000 Constraint 206 540 0.8000 1.0000 2.0000 0.0000 Constraint 206 533 0.8000 1.0000 2.0000 0.0000 Constraint 206 455 0.8000 1.0000 2.0000 0.0000 Constraint 206 446 0.8000 1.0000 2.0000 0.0000 Constraint 206 434 0.8000 1.0000 2.0000 0.0000 Constraint 206 427 0.8000 1.0000 2.0000 0.0000 Constraint 206 418 0.8000 1.0000 2.0000 0.0000 Constraint 206 383 0.8000 1.0000 2.0000 0.0000 Constraint 206 369 0.8000 1.0000 2.0000 0.0000 Constraint 206 358 0.8000 1.0000 2.0000 0.0000 Constraint 206 350 0.8000 1.0000 2.0000 0.0000 Constraint 206 340 0.8000 1.0000 2.0000 0.0000 Constraint 206 329 0.8000 1.0000 2.0000 0.0000 Constraint 206 324 0.8000 1.0000 2.0000 0.0000 Constraint 206 319 0.8000 1.0000 2.0000 0.0000 Constraint 206 312 0.8000 1.0000 2.0000 0.0000 Constraint 206 306 0.8000 1.0000 2.0000 0.0000 Constraint 206 295 0.8000 1.0000 2.0000 0.0000 Constraint 206 287 0.8000 1.0000 2.0000 0.0000 Constraint 206 274 0.8000 1.0000 2.0000 0.0000 Constraint 206 263 0.8000 1.0000 2.0000 0.0000 Constraint 206 255 0.8000 1.0000 2.0000 0.0000 Constraint 206 243 0.8000 1.0000 2.0000 0.0000 Constraint 206 234 0.8000 1.0000 2.0000 0.0000 Constraint 206 223 0.8000 1.0000 2.0000 0.0000 Constraint 206 212 0.8000 1.0000 2.0000 0.0000 Constraint 197 691 0.8000 1.0000 2.0000 0.0000 Constraint 197 680 0.8000 1.0000 2.0000 0.0000 Constraint 197 673 0.8000 1.0000 2.0000 0.0000 Constraint 197 642 0.8000 1.0000 2.0000 0.0000 Constraint 197 634 0.8000 1.0000 2.0000 0.0000 Constraint 197 626 0.8000 1.0000 2.0000 0.0000 Constraint 197 610 0.8000 1.0000 2.0000 0.0000 Constraint 197 601 0.8000 1.0000 2.0000 0.0000 Constraint 197 593 0.8000 1.0000 2.0000 0.0000 Constraint 197 584 0.8000 1.0000 2.0000 0.0000 Constraint 197 573 0.8000 1.0000 2.0000 0.0000 Constraint 197 568 0.8000 1.0000 2.0000 0.0000 Constraint 197 559 0.8000 1.0000 2.0000 0.0000 Constraint 197 540 0.8000 1.0000 2.0000 0.0000 Constraint 197 533 0.8000 1.0000 2.0000 0.0000 Constraint 197 455 0.8000 1.0000 2.0000 0.0000 Constraint 197 446 0.8000 1.0000 2.0000 0.0000 Constraint 197 434 0.8000 1.0000 2.0000 0.0000 Constraint 197 427 0.8000 1.0000 2.0000 0.0000 Constraint 197 418 0.8000 1.0000 2.0000 0.0000 Constraint 197 358 0.8000 1.0000 2.0000 0.0000 Constraint 197 340 0.8000 1.0000 2.0000 0.0000 Constraint 197 329 0.8000 1.0000 2.0000 0.0000 Constraint 197 324 0.8000 1.0000 2.0000 0.0000 Constraint 197 312 0.8000 1.0000 2.0000 0.0000 Constraint 197 306 0.8000 1.0000 2.0000 0.0000 Constraint 197 287 0.8000 1.0000 2.0000 0.0000 Constraint 197 263 0.8000 1.0000 2.0000 0.0000 Constraint 197 255 0.8000 1.0000 2.0000 0.0000 Constraint 197 243 0.8000 1.0000 2.0000 0.0000 Constraint 197 234 0.8000 1.0000 2.0000 0.0000 Constraint 197 223 0.8000 1.0000 2.0000 0.0000 Constraint 197 212 0.8000 1.0000 2.0000 0.0000 Constraint 197 206 0.8000 1.0000 2.0000 0.0000 Constraint 189 680 0.8000 1.0000 2.0000 0.0000 Constraint 189 673 0.8000 1.0000 2.0000 0.0000 Constraint 189 667 0.8000 1.0000 2.0000 0.0000 Constraint 189 634 0.8000 1.0000 2.0000 0.0000 Constraint 189 626 0.8000 1.0000 2.0000 0.0000 Constraint 189 615 0.8000 1.0000 2.0000 0.0000 Constraint 189 610 0.8000 1.0000 2.0000 0.0000 Constraint 189 601 0.8000 1.0000 2.0000 0.0000 Constraint 189 593 0.8000 1.0000 2.0000 0.0000 Constraint 189 584 0.8000 1.0000 2.0000 0.0000 Constraint 189 573 0.8000 1.0000 2.0000 0.0000 Constraint 189 568 0.8000 1.0000 2.0000 0.0000 Constraint 189 559 0.8000 1.0000 2.0000 0.0000 Constraint 189 551 0.8000 1.0000 2.0000 0.0000 Constraint 189 545 0.8000 1.0000 2.0000 0.0000 Constraint 189 540 0.8000 1.0000 2.0000 0.0000 Constraint 189 455 0.8000 1.0000 2.0000 0.0000 Constraint 189 446 0.8000 1.0000 2.0000 0.0000 Constraint 189 434 0.8000 1.0000 2.0000 0.0000 Constraint 189 427 0.8000 1.0000 2.0000 0.0000 Constraint 189 418 0.8000 1.0000 2.0000 0.0000 Constraint 189 410 0.8000 1.0000 2.0000 0.0000 Constraint 189 383 0.8000 1.0000 2.0000 0.0000 Constraint 189 369 0.8000 1.0000 2.0000 0.0000 Constraint 189 358 0.8000 1.0000 2.0000 0.0000 Constraint 189 350 0.8000 1.0000 2.0000 0.0000 Constraint 189 340 0.8000 1.0000 2.0000 0.0000 Constraint 189 329 0.8000 1.0000 2.0000 0.0000 Constraint 189 324 0.8000 1.0000 2.0000 0.0000 Constraint 189 319 0.8000 1.0000 2.0000 0.0000 Constraint 189 312 0.8000 1.0000 2.0000 0.0000 Constraint 189 306 0.8000 1.0000 2.0000 0.0000 Constraint 189 295 0.8000 1.0000 2.0000 0.0000 Constraint 189 280 0.8000 1.0000 2.0000 0.0000 Constraint 189 274 0.8000 1.0000 2.0000 0.0000 Constraint 189 255 0.8000 1.0000 2.0000 0.0000 Constraint 189 243 0.8000 1.0000 2.0000 0.0000 Constraint 189 234 0.8000 1.0000 2.0000 0.0000 Constraint 189 223 0.8000 1.0000 2.0000 0.0000 Constraint 189 212 0.8000 1.0000 2.0000 0.0000 Constraint 189 206 0.8000 1.0000 2.0000 0.0000 Constraint 189 197 0.8000 1.0000 2.0000 0.0000 Constraint 183 691 0.8000 1.0000 2.0000 0.0000 Constraint 183 667 0.8000 1.0000 2.0000 0.0000 Constraint 183 649 0.8000 1.0000 2.0000 0.0000 Constraint 183 642 0.8000 1.0000 2.0000 0.0000 Constraint 183 634 0.8000 1.0000 2.0000 0.0000 Constraint 183 626 0.8000 1.0000 2.0000 0.0000 Constraint 183 615 0.8000 1.0000 2.0000 0.0000 Constraint 183 610 0.8000 1.0000 2.0000 0.0000 Constraint 183 601 0.8000 1.0000 2.0000 0.0000 Constraint 183 593 0.8000 1.0000 2.0000 0.0000 Constraint 183 584 0.8000 1.0000 2.0000 0.0000 Constraint 183 573 0.8000 1.0000 2.0000 0.0000 Constraint 183 568 0.8000 1.0000 2.0000 0.0000 Constraint 183 559 0.8000 1.0000 2.0000 0.0000 Constraint 183 545 0.8000 1.0000 2.0000 0.0000 Constraint 183 540 0.8000 1.0000 2.0000 0.0000 Constraint 183 517 0.8000 1.0000 2.0000 0.0000 Constraint 183 455 0.8000 1.0000 2.0000 0.0000 Constraint 183 446 0.8000 1.0000 2.0000 0.0000 Constraint 183 434 0.8000 1.0000 2.0000 0.0000 Constraint 183 427 0.8000 1.0000 2.0000 0.0000 Constraint 183 418 0.8000 1.0000 2.0000 0.0000 Constraint 183 410 0.8000 1.0000 2.0000 0.0000 Constraint 183 383 0.8000 1.0000 2.0000 0.0000 Constraint 183 358 0.8000 1.0000 2.0000 0.0000 Constraint 183 350 0.8000 1.0000 2.0000 0.0000 Constraint 183 340 0.8000 1.0000 2.0000 0.0000 Constraint 183 329 0.8000 1.0000 2.0000 0.0000 Constraint 183 324 0.8000 1.0000 2.0000 0.0000 Constraint 183 319 0.8000 1.0000 2.0000 0.0000 Constraint 183 312 0.8000 1.0000 2.0000 0.0000 Constraint 183 306 0.8000 1.0000 2.0000 0.0000 Constraint 183 287 0.8000 1.0000 2.0000 0.0000 Constraint 183 243 0.8000 1.0000 2.0000 0.0000 Constraint 183 234 0.8000 1.0000 2.0000 0.0000 Constraint 183 223 0.8000 1.0000 2.0000 0.0000 Constraint 183 212 0.8000 1.0000 2.0000 0.0000 Constraint 183 206 0.8000 1.0000 2.0000 0.0000 Constraint 183 197 0.8000 1.0000 2.0000 0.0000 Constraint 183 189 0.8000 1.0000 2.0000 0.0000 Constraint 173 673 0.8000 1.0000 2.0000 0.0000 Constraint 173 667 0.8000 1.0000 2.0000 0.0000 Constraint 173 660 0.8000 1.0000 2.0000 0.0000 Constraint 173 649 0.8000 1.0000 2.0000 0.0000 Constraint 173 642 0.8000 1.0000 2.0000 0.0000 Constraint 173 634 0.8000 1.0000 2.0000 0.0000 Constraint 173 626 0.8000 1.0000 2.0000 0.0000 Constraint 173 615 0.8000 1.0000 2.0000 0.0000 Constraint 173 610 0.8000 1.0000 2.0000 0.0000 Constraint 173 601 0.8000 1.0000 2.0000 0.0000 Constraint 173 593 0.8000 1.0000 2.0000 0.0000 Constraint 173 584 0.8000 1.0000 2.0000 0.0000 Constraint 173 573 0.8000 1.0000 2.0000 0.0000 Constraint 173 568 0.8000 1.0000 2.0000 0.0000 Constraint 173 559 0.8000 1.0000 2.0000 0.0000 Constraint 173 545 0.8000 1.0000 2.0000 0.0000 Constraint 173 540 0.8000 1.0000 2.0000 0.0000 Constraint 173 517 0.8000 1.0000 2.0000 0.0000 Constraint 173 512 0.8000 1.0000 2.0000 0.0000 Constraint 173 491 0.8000 1.0000 2.0000 0.0000 Constraint 173 470 0.8000 1.0000 2.0000 0.0000 Constraint 173 463 0.8000 1.0000 2.0000 0.0000 Constraint 173 455 0.8000 1.0000 2.0000 0.0000 Constraint 173 446 0.8000 1.0000 2.0000 0.0000 Constraint 173 434 0.8000 1.0000 2.0000 0.0000 Constraint 173 427 0.8000 1.0000 2.0000 0.0000 Constraint 173 418 0.8000 1.0000 2.0000 0.0000 Constraint 173 410 0.8000 1.0000 2.0000 0.0000 Constraint 173 383 0.8000 1.0000 2.0000 0.0000 Constraint 173 369 0.8000 1.0000 2.0000 0.0000 Constraint 173 358 0.8000 1.0000 2.0000 0.0000 Constraint 173 340 0.8000 1.0000 2.0000 0.0000 Constraint 173 329 0.8000 1.0000 2.0000 0.0000 Constraint 173 295 0.8000 1.0000 2.0000 0.0000 Constraint 173 234 0.8000 1.0000 2.0000 0.0000 Constraint 173 223 0.8000 1.0000 2.0000 0.0000 Constraint 173 212 0.8000 1.0000 2.0000 0.0000 Constraint 173 206 0.8000 1.0000 2.0000 0.0000 Constraint 173 197 0.8000 1.0000 2.0000 0.0000 Constraint 173 189 0.8000 1.0000 2.0000 0.0000 Constraint 173 183 0.8000 1.0000 2.0000 0.0000 Constraint 165 691 0.8000 1.0000 2.0000 0.0000 Constraint 165 680 0.8000 1.0000 2.0000 0.0000 Constraint 165 673 0.8000 1.0000 2.0000 0.0000 Constraint 165 667 0.8000 1.0000 2.0000 0.0000 Constraint 165 660 0.8000 1.0000 2.0000 0.0000 Constraint 165 649 0.8000 1.0000 2.0000 0.0000 Constraint 165 642 0.8000 1.0000 2.0000 0.0000 Constraint 165 634 0.8000 1.0000 2.0000 0.0000 Constraint 165 626 0.8000 1.0000 2.0000 0.0000 Constraint 165 610 0.8000 1.0000 2.0000 0.0000 Constraint 165 601 0.8000 1.0000 2.0000 0.0000 Constraint 165 593 0.8000 1.0000 2.0000 0.0000 Constraint 165 584 0.8000 1.0000 2.0000 0.0000 Constraint 165 573 0.8000 1.0000 2.0000 0.0000 Constraint 165 568 0.8000 1.0000 2.0000 0.0000 Constraint 165 559 0.8000 1.0000 2.0000 0.0000 Constraint 165 545 0.8000 1.0000 2.0000 0.0000 Constraint 165 540 0.8000 1.0000 2.0000 0.0000 Constraint 165 491 0.8000 1.0000 2.0000 0.0000 Constraint 165 470 0.8000 1.0000 2.0000 0.0000 Constraint 165 455 0.8000 1.0000 2.0000 0.0000 Constraint 165 446 0.8000 1.0000 2.0000 0.0000 Constraint 165 434 0.8000 1.0000 2.0000 0.0000 Constraint 165 418 0.8000 1.0000 2.0000 0.0000 Constraint 165 410 0.8000 1.0000 2.0000 0.0000 Constraint 165 383 0.8000 1.0000 2.0000 0.0000 Constraint 165 358 0.8000 1.0000 2.0000 0.0000 Constraint 165 340 0.8000 1.0000 2.0000 0.0000 Constraint 165 329 0.8000 1.0000 2.0000 0.0000 Constraint 165 295 0.8000 1.0000 2.0000 0.0000 Constraint 165 223 0.8000 1.0000 2.0000 0.0000 Constraint 165 212 0.8000 1.0000 2.0000 0.0000 Constraint 165 206 0.8000 1.0000 2.0000 0.0000 Constraint 165 197 0.8000 1.0000 2.0000 0.0000 Constraint 165 189 0.8000 1.0000 2.0000 0.0000 Constraint 165 183 0.8000 1.0000 2.0000 0.0000 Constraint 165 173 0.8000 1.0000 2.0000 0.0000 Constraint 157 691 0.8000 1.0000 2.0000 0.0000 Constraint 157 680 0.8000 1.0000 2.0000 0.0000 Constraint 157 673 0.8000 1.0000 2.0000 0.0000 Constraint 157 667 0.8000 1.0000 2.0000 0.0000 Constraint 157 660 0.8000 1.0000 2.0000 0.0000 Constraint 157 649 0.8000 1.0000 2.0000 0.0000 Constraint 157 642 0.8000 1.0000 2.0000 0.0000 Constraint 157 634 0.8000 1.0000 2.0000 0.0000 Constraint 157 626 0.8000 1.0000 2.0000 0.0000 Constraint 157 615 0.8000 1.0000 2.0000 0.0000 Constraint 157 601 0.8000 1.0000 2.0000 0.0000 Constraint 157 593 0.8000 1.0000 2.0000 0.0000 Constraint 157 584 0.8000 1.0000 2.0000 0.0000 Constraint 157 573 0.8000 1.0000 2.0000 0.0000 Constraint 157 568 0.8000 1.0000 2.0000 0.0000 Constraint 157 559 0.8000 1.0000 2.0000 0.0000 Constraint 157 545 0.8000 1.0000 2.0000 0.0000 Constraint 157 540 0.8000 1.0000 2.0000 0.0000 Constraint 157 517 0.8000 1.0000 2.0000 0.0000 Constraint 157 512 0.8000 1.0000 2.0000 0.0000 Constraint 157 483 0.8000 1.0000 2.0000 0.0000 Constraint 157 470 0.8000 1.0000 2.0000 0.0000 Constraint 157 463 0.8000 1.0000 2.0000 0.0000 Constraint 157 455 0.8000 1.0000 2.0000 0.0000 Constraint 157 446 0.8000 1.0000 2.0000 0.0000 Constraint 157 434 0.8000 1.0000 2.0000 0.0000 Constraint 157 427 0.8000 1.0000 2.0000 0.0000 Constraint 157 418 0.8000 1.0000 2.0000 0.0000 Constraint 157 410 0.8000 1.0000 2.0000 0.0000 Constraint 157 391 0.8000 1.0000 2.0000 0.0000 Constraint 157 383 0.8000 1.0000 2.0000 0.0000 Constraint 157 374 0.8000 1.0000 2.0000 0.0000 Constraint 157 358 0.8000 1.0000 2.0000 0.0000 Constraint 157 340 0.8000 1.0000 2.0000 0.0000 Constraint 157 329 0.8000 1.0000 2.0000 0.0000 Constraint 157 223 0.8000 1.0000 2.0000 0.0000 Constraint 157 212 0.8000 1.0000 2.0000 0.0000 Constraint 157 206 0.8000 1.0000 2.0000 0.0000 Constraint 157 197 0.8000 1.0000 2.0000 0.0000 Constraint 157 189 0.8000 1.0000 2.0000 0.0000 Constraint 157 183 0.8000 1.0000 2.0000 0.0000 Constraint 157 173 0.8000 1.0000 2.0000 0.0000 Constraint 157 165 0.8000 1.0000 2.0000 0.0000 Constraint 146 691 0.8000 1.0000 2.0000 0.0000 Constraint 146 680 0.8000 1.0000 2.0000 0.0000 Constraint 146 673 0.8000 1.0000 2.0000 0.0000 Constraint 146 667 0.8000 1.0000 2.0000 0.0000 Constraint 146 660 0.8000 1.0000 2.0000 0.0000 Constraint 146 649 0.8000 1.0000 2.0000 0.0000 Constraint 146 642 0.8000 1.0000 2.0000 0.0000 Constraint 146 601 0.8000 1.0000 2.0000 0.0000 Constraint 146 593 0.8000 1.0000 2.0000 0.0000 Constraint 146 584 0.8000 1.0000 2.0000 0.0000 Constraint 146 573 0.8000 1.0000 2.0000 0.0000 Constraint 146 568 0.8000 1.0000 2.0000 0.0000 Constraint 146 545 0.8000 1.0000 2.0000 0.0000 Constraint 146 540 0.8000 1.0000 2.0000 0.0000 Constraint 146 517 0.8000 1.0000 2.0000 0.0000 Constraint 146 512 0.8000 1.0000 2.0000 0.0000 Constraint 146 491 0.8000 1.0000 2.0000 0.0000 Constraint 146 483 0.8000 1.0000 2.0000 0.0000 Constraint 146 470 0.8000 1.0000 2.0000 0.0000 Constraint 146 463 0.8000 1.0000 2.0000 0.0000 Constraint 146 455 0.8000 1.0000 2.0000 0.0000 Constraint 146 446 0.8000 1.0000 2.0000 0.0000 Constraint 146 434 0.8000 1.0000 2.0000 0.0000 Constraint 146 427 0.8000 1.0000 2.0000 0.0000 Constraint 146 418 0.8000 1.0000 2.0000 0.0000 Constraint 146 410 0.8000 1.0000 2.0000 0.0000 Constraint 146 391 0.8000 1.0000 2.0000 0.0000 Constraint 146 383 0.8000 1.0000 2.0000 0.0000 Constraint 146 374 0.8000 1.0000 2.0000 0.0000 Constraint 146 340 0.8000 1.0000 2.0000 0.0000 Constraint 146 223 0.8000 1.0000 2.0000 0.0000 Constraint 146 212 0.8000 1.0000 2.0000 0.0000 Constraint 146 206 0.8000 1.0000 2.0000 0.0000 Constraint 146 197 0.8000 1.0000 2.0000 0.0000 Constraint 146 189 0.8000 1.0000 2.0000 0.0000 Constraint 146 183 0.8000 1.0000 2.0000 0.0000 Constraint 146 173 0.8000 1.0000 2.0000 0.0000 Constraint 146 165 0.8000 1.0000 2.0000 0.0000 Constraint 146 157 0.8000 1.0000 2.0000 0.0000 Constraint 130 691 0.8000 1.0000 2.0000 0.0000 Constraint 130 680 0.8000 1.0000 2.0000 0.0000 Constraint 130 673 0.8000 1.0000 2.0000 0.0000 Constraint 130 667 0.8000 1.0000 2.0000 0.0000 Constraint 130 660 0.8000 1.0000 2.0000 0.0000 Constraint 130 649 0.8000 1.0000 2.0000 0.0000 Constraint 130 601 0.8000 1.0000 2.0000 0.0000 Constraint 130 593 0.8000 1.0000 2.0000 0.0000 Constraint 130 568 0.8000 1.0000 2.0000 0.0000 Constraint 130 545 0.8000 1.0000 2.0000 0.0000 Constraint 130 533 0.8000 1.0000 2.0000 0.0000 Constraint 130 517 0.8000 1.0000 2.0000 0.0000 Constraint 130 483 0.8000 1.0000 2.0000 0.0000 Constraint 130 470 0.8000 1.0000 2.0000 0.0000 Constraint 130 463 0.8000 1.0000 2.0000 0.0000 Constraint 130 455 0.8000 1.0000 2.0000 0.0000 Constraint 130 446 0.8000 1.0000 2.0000 0.0000 Constraint 130 418 0.8000 1.0000 2.0000 0.0000 Constraint 130 410 0.8000 1.0000 2.0000 0.0000 Constraint 130 391 0.8000 1.0000 2.0000 0.0000 Constraint 130 383 0.8000 1.0000 2.0000 0.0000 Constraint 130 374 0.8000 1.0000 2.0000 0.0000 Constraint 130 369 0.8000 1.0000 2.0000 0.0000 Constraint 130 358 0.8000 1.0000 2.0000 0.0000 Constraint 130 274 0.8000 1.0000 2.0000 0.0000 Constraint 130 263 0.8000 1.0000 2.0000 0.0000 Constraint 130 234 0.8000 1.0000 2.0000 0.0000 Constraint 130 223 0.8000 1.0000 2.0000 0.0000 Constraint 130 197 0.8000 1.0000 2.0000 0.0000 Constraint 130 189 0.8000 1.0000 2.0000 0.0000 Constraint 130 183 0.8000 1.0000 2.0000 0.0000 Constraint 130 173 0.8000 1.0000 2.0000 0.0000 Constraint 130 165 0.8000 1.0000 2.0000 0.0000 Constraint 130 157 0.8000 1.0000 2.0000 0.0000 Constraint 130 146 0.8000 1.0000 2.0000 0.0000 Constraint 117 691 0.8000 1.0000 2.0000 0.0000 Constraint 117 680 0.8000 1.0000 2.0000 0.0000 Constraint 117 673 0.8000 1.0000 2.0000 0.0000 Constraint 117 667 0.8000 1.0000 2.0000 0.0000 Constraint 117 660 0.8000 1.0000 2.0000 0.0000 Constraint 117 649 0.8000 1.0000 2.0000 0.0000 Constraint 117 642 0.8000 1.0000 2.0000 0.0000 Constraint 117 634 0.8000 1.0000 2.0000 0.0000 Constraint 117 626 0.8000 1.0000 2.0000 0.0000 Constraint 117 615 0.8000 1.0000 2.0000 0.0000 Constraint 117 470 0.8000 1.0000 2.0000 0.0000 Constraint 117 463 0.8000 1.0000 2.0000 0.0000 Constraint 117 455 0.8000 1.0000 2.0000 0.0000 Constraint 117 446 0.8000 1.0000 2.0000 0.0000 Constraint 117 434 0.8000 1.0000 2.0000 0.0000 Constraint 117 427 0.8000 1.0000 2.0000 0.0000 Constraint 117 418 0.8000 1.0000 2.0000 0.0000 Constraint 117 410 0.8000 1.0000 2.0000 0.0000 Constraint 117 402 0.8000 1.0000 2.0000 0.0000 Constraint 117 391 0.8000 1.0000 2.0000 0.0000 Constraint 117 383 0.8000 1.0000 2.0000 0.0000 Constraint 117 374 0.8000 1.0000 2.0000 0.0000 Constraint 117 369 0.8000 1.0000 2.0000 0.0000 Constraint 117 358 0.8000 1.0000 2.0000 0.0000 Constraint 117 350 0.8000 1.0000 2.0000 0.0000 Constraint 117 340 0.8000 1.0000 2.0000 0.0000 Constraint 117 329 0.8000 1.0000 2.0000 0.0000 Constraint 117 324 0.8000 1.0000 2.0000 0.0000 Constraint 117 319 0.8000 1.0000 2.0000 0.0000 Constraint 117 295 0.8000 1.0000 2.0000 0.0000 Constraint 117 274 0.8000 1.0000 2.0000 0.0000 Constraint 117 263 0.8000 1.0000 2.0000 0.0000 Constraint 117 255 0.8000 1.0000 2.0000 0.0000 Constraint 117 243 0.8000 1.0000 2.0000 0.0000 Constraint 117 183 0.8000 1.0000 2.0000 0.0000 Constraint 117 173 0.8000 1.0000 2.0000 0.0000 Constraint 117 165 0.8000 1.0000 2.0000 0.0000 Constraint 117 157 0.8000 1.0000 2.0000 0.0000 Constraint 117 146 0.8000 1.0000 2.0000 0.0000 Constraint 117 130 0.8000 1.0000 2.0000 0.0000 Constraint 110 691 0.8000 1.0000 2.0000 0.0000 Constraint 110 680 0.8000 1.0000 2.0000 0.0000 Constraint 110 673 0.8000 1.0000 2.0000 0.0000 Constraint 110 667 0.8000 1.0000 2.0000 0.0000 Constraint 110 660 0.8000 1.0000 2.0000 0.0000 Constraint 110 649 0.8000 1.0000 2.0000 0.0000 Constraint 110 642 0.8000 1.0000 2.0000 0.0000 Constraint 110 634 0.8000 1.0000 2.0000 0.0000 Constraint 110 626 0.8000 1.0000 2.0000 0.0000 Constraint 110 615 0.8000 1.0000 2.0000 0.0000 Constraint 110 545 0.8000 1.0000 2.0000 0.0000 Constraint 110 540 0.8000 1.0000 2.0000 0.0000 Constraint 110 533 0.8000 1.0000 2.0000 0.0000 Constraint 110 470 0.8000 1.0000 2.0000 0.0000 Constraint 110 455 0.8000 1.0000 2.0000 0.0000 Constraint 110 446 0.8000 1.0000 2.0000 0.0000 Constraint 110 434 0.8000 1.0000 2.0000 0.0000 Constraint 110 427 0.8000 1.0000 2.0000 0.0000 Constraint 110 418 0.8000 1.0000 2.0000 0.0000 Constraint 110 410 0.8000 1.0000 2.0000 0.0000 Constraint 110 402 0.8000 1.0000 2.0000 0.0000 Constraint 110 383 0.8000 1.0000 2.0000 0.0000 Constraint 110 374 0.8000 1.0000 2.0000 0.0000 Constraint 110 369 0.8000 1.0000 2.0000 0.0000 Constraint 110 358 0.8000 1.0000 2.0000 0.0000 Constraint 110 350 0.8000 1.0000 2.0000 0.0000 Constraint 110 324 0.8000 1.0000 2.0000 0.0000 Constraint 110 319 0.8000 1.0000 2.0000 0.0000 Constraint 110 274 0.8000 1.0000 2.0000 0.0000 Constraint 110 263 0.8000 1.0000 2.0000 0.0000 Constraint 110 255 0.8000 1.0000 2.0000 0.0000 Constraint 110 212 0.8000 1.0000 2.0000 0.0000 Constraint 110 206 0.8000 1.0000 2.0000 0.0000 Constraint 110 197 0.8000 1.0000 2.0000 0.0000 Constraint 110 183 0.8000 1.0000 2.0000 0.0000 Constraint 110 173 0.8000 1.0000 2.0000 0.0000 Constraint 110 165 0.8000 1.0000 2.0000 0.0000 Constraint 110 157 0.8000 1.0000 2.0000 0.0000 Constraint 110 146 0.8000 1.0000 2.0000 0.0000 Constraint 110 130 0.8000 1.0000 2.0000 0.0000 Constraint 110 117 0.8000 1.0000 2.0000 0.0000 Constraint 97 691 0.8000 1.0000 2.0000 0.0000 Constraint 97 680 0.8000 1.0000 2.0000 0.0000 Constraint 97 673 0.8000 1.0000 2.0000 0.0000 Constraint 97 667 0.8000 1.0000 2.0000 0.0000 Constraint 97 660 0.8000 1.0000 2.0000 0.0000 Constraint 97 649 0.8000 1.0000 2.0000 0.0000 Constraint 97 642 0.8000 1.0000 2.0000 0.0000 Constraint 97 634 0.8000 1.0000 2.0000 0.0000 Constraint 97 568 0.8000 1.0000 2.0000 0.0000 Constraint 97 545 0.8000 1.0000 2.0000 0.0000 Constraint 97 540 0.8000 1.0000 2.0000 0.0000 Constraint 97 517 0.8000 1.0000 2.0000 0.0000 Constraint 97 512 0.8000 1.0000 2.0000 0.0000 Constraint 97 491 0.8000 1.0000 2.0000 0.0000 Constraint 97 483 0.8000 1.0000 2.0000 0.0000 Constraint 97 470 0.8000 1.0000 2.0000 0.0000 Constraint 97 463 0.8000 1.0000 2.0000 0.0000 Constraint 97 455 0.8000 1.0000 2.0000 0.0000 Constraint 97 446 0.8000 1.0000 2.0000 0.0000 Constraint 97 427 0.8000 1.0000 2.0000 0.0000 Constraint 97 418 0.8000 1.0000 2.0000 0.0000 Constraint 97 410 0.8000 1.0000 2.0000 0.0000 Constraint 97 391 0.8000 1.0000 2.0000 0.0000 Constraint 97 383 0.8000 1.0000 2.0000 0.0000 Constraint 97 374 0.8000 1.0000 2.0000 0.0000 Constraint 97 369 0.8000 1.0000 2.0000 0.0000 Constraint 97 358 0.8000 1.0000 2.0000 0.0000 Constraint 97 324 0.8000 1.0000 2.0000 0.0000 Constraint 97 287 0.8000 1.0000 2.0000 0.0000 Constraint 97 280 0.8000 1.0000 2.0000 0.0000 Constraint 97 274 0.8000 1.0000 2.0000 0.0000 Constraint 97 212 0.8000 1.0000 2.0000 0.0000 Constraint 97 206 0.8000 1.0000 2.0000 0.0000 Constraint 97 189 0.8000 1.0000 2.0000 0.0000 Constraint 97 173 0.8000 1.0000 2.0000 0.0000 Constraint 97 157 0.8000 1.0000 2.0000 0.0000 Constraint 97 146 0.8000 1.0000 2.0000 0.0000 Constraint 97 130 0.8000 1.0000 2.0000 0.0000 Constraint 97 117 0.8000 1.0000 2.0000 0.0000 Constraint 97 110 0.8000 1.0000 2.0000 0.0000 Constraint 86 691 0.8000 1.0000 2.0000 0.0000 Constraint 86 680 0.8000 1.0000 2.0000 0.0000 Constraint 86 673 0.8000 1.0000 2.0000 0.0000 Constraint 86 667 0.8000 1.0000 2.0000 0.0000 Constraint 86 660 0.8000 1.0000 2.0000 0.0000 Constraint 86 649 0.8000 1.0000 2.0000 0.0000 Constraint 86 568 0.8000 1.0000 2.0000 0.0000 Constraint 86 559 0.8000 1.0000 2.0000 0.0000 Constraint 86 545 0.8000 1.0000 2.0000 0.0000 Constraint 86 540 0.8000 1.0000 2.0000 0.0000 Constraint 86 517 0.8000 1.0000 2.0000 0.0000 Constraint 86 512 0.8000 1.0000 2.0000 0.0000 Constraint 86 491 0.8000 1.0000 2.0000 0.0000 Constraint 86 483 0.8000 1.0000 2.0000 0.0000 Constraint 86 470 0.8000 1.0000 2.0000 0.0000 Constraint 86 463 0.8000 1.0000 2.0000 0.0000 Constraint 86 455 0.8000 1.0000 2.0000 0.0000 Constraint 86 446 0.8000 1.0000 2.0000 0.0000 Constraint 86 427 0.8000 1.0000 2.0000 0.0000 Constraint 86 418 0.8000 1.0000 2.0000 0.0000 Constraint 86 410 0.8000 1.0000 2.0000 0.0000 Constraint 86 391 0.8000 1.0000 2.0000 0.0000 Constraint 86 374 0.8000 1.0000 2.0000 0.0000 Constraint 86 369 0.8000 1.0000 2.0000 0.0000 Constraint 86 358 0.8000 1.0000 2.0000 0.0000 Constraint 86 295 0.8000 1.0000 2.0000 0.0000 Constraint 86 287 0.8000 1.0000 2.0000 0.0000 Constraint 86 223 0.8000 1.0000 2.0000 0.0000 Constraint 86 212 0.8000 1.0000 2.0000 0.0000 Constraint 86 206 0.8000 1.0000 2.0000 0.0000 Constraint 86 197 0.8000 1.0000 2.0000 0.0000 Constraint 86 189 0.8000 1.0000 2.0000 0.0000 Constraint 86 146 0.8000 1.0000 2.0000 0.0000 Constraint 86 130 0.8000 1.0000 2.0000 0.0000 Constraint 86 117 0.8000 1.0000 2.0000 0.0000 Constraint 86 110 0.8000 1.0000 2.0000 0.0000 Constraint 86 97 0.8000 1.0000 2.0000 0.0000 Constraint 78 691 0.8000 1.0000 2.0000 0.0000 Constraint 78 680 0.8000 1.0000 2.0000 0.0000 Constraint 78 673 0.8000 1.0000 2.0000 0.0000 Constraint 78 667 0.8000 1.0000 2.0000 0.0000 Constraint 78 660 0.8000 1.0000 2.0000 0.0000 Constraint 78 649 0.8000 1.0000 2.0000 0.0000 Constraint 78 568 0.8000 1.0000 2.0000 0.0000 Constraint 78 545 0.8000 1.0000 2.0000 0.0000 Constraint 78 540 0.8000 1.0000 2.0000 0.0000 Constraint 78 517 0.8000 1.0000 2.0000 0.0000 Constraint 78 491 0.8000 1.0000 2.0000 0.0000 Constraint 78 483 0.8000 1.0000 2.0000 0.0000 Constraint 78 470 0.8000 1.0000 2.0000 0.0000 Constraint 78 463 0.8000 1.0000 2.0000 0.0000 Constraint 78 455 0.8000 1.0000 2.0000 0.0000 Constraint 78 446 0.8000 1.0000 2.0000 0.0000 Constraint 78 418 0.8000 1.0000 2.0000 0.0000 Constraint 78 410 0.8000 1.0000 2.0000 0.0000 Constraint 78 374 0.8000 1.0000 2.0000 0.0000 Constraint 78 369 0.8000 1.0000 2.0000 0.0000 Constraint 78 358 0.8000 1.0000 2.0000 0.0000 Constraint 78 324 0.8000 1.0000 2.0000 0.0000 Constraint 78 295 0.8000 1.0000 2.0000 0.0000 Constraint 78 212 0.8000 1.0000 2.0000 0.0000 Constraint 78 206 0.8000 1.0000 2.0000 0.0000 Constraint 78 173 0.8000 1.0000 2.0000 0.0000 Constraint 78 130 0.8000 1.0000 2.0000 0.0000 Constraint 78 117 0.8000 1.0000 2.0000 0.0000 Constraint 78 110 0.8000 1.0000 2.0000 0.0000 Constraint 78 97 0.8000 1.0000 2.0000 0.0000 Constraint 78 86 0.8000 1.0000 2.0000 0.0000 Constraint 68 691 0.8000 1.0000 2.0000 0.0000 Constraint 68 680 0.8000 1.0000 2.0000 0.0000 Constraint 68 673 0.8000 1.0000 2.0000 0.0000 Constraint 68 667 0.8000 1.0000 2.0000 0.0000 Constraint 68 660 0.8000 1.0000 2.0000 0.0000 Constraint 68 584 0.8000 1.0000 2.0000 0.0000 Constraint 68 573 0.8000 1.0000 2.0000 0.0000 Constraint 68 568 0.8000 1.0000 2.0000 0.0000 Constraint 68 551 0.8000 1.0000 2.0000 0.0000 Constraint 68 545 0.8000 1.0000 2.0000 0.0000 Constraint 68 533 0.8000 1.0000 2.0000 0.0000 Constraint 68 526 0.8000 1.0000 2.0000 0.0000 Constraint 68 517 0.8000 1.0000 2.0000 0.0000 Constraint 68 491 0.8000 1.0000 2.0000 0.0000 Constraint 68 483 0.8000 1.0000 2.0000 0.0000 Constraint 68 463 0.8000 1.0000 2.0000 0.0000 Constraint 68 455 0.8000 1.0000 2.0000 0.0000 Constraint 68 446 0.8000 1.0000 2.0000 0.0000 Constraint 68 418 0.8000 1.0000 2.0000 0.0000 Constraint 68 410 0.8000 1.0000 2.0000 0.0000 Constraint 68 402 0.8000 1.0000 2.0000 0.0000 Constraint 68 391 0.8000 1.0000 2.0000 0.0000 Constraint 68 374 0.8000 1.0000 2.0000 0.0000 Constraint 68 369 0.8000 1.0000 2.0000 0.0000 Constraint 68 358 0.8000 1.0000 2.0000 0.0000 Constraint 68 295 0.8000 1.0000 2.0000 0.0000 Constraint 68 243 0.8000 1.0000 2.0000 0.0000 Constraint 68 206 0.8000 1.0000 2.0000 0.0000 Constraint 68 130 0.8000 1.0000 2.0000 0.0000 Constraint 68 117 0.8000 1.0000 2.0000 0.0000 Constraint 68 110 0.8000 1.0000 2.0000 0.0000 Constraint 68 97 0.8000 1.0000 2.0000 0.0000 Constraint 68 86 0.8000 1.0000 2.0000 0.0000 Constraint 68 78 0.8000 1.0000 2.0000 0.0000 Constraint 62 691 0.8000 1.0000 2.0000 0.0000 Constraint 62 680 0.8000 1.0000 2.0000 0.0000 Constraint 62 673 0.8000 1.0000 2.0000 0.0000 Constraint 62 667 0.8000 1.0000 2.0000 0.0000 Constraint 62 660 0.8000 1.0000 2.0000 0.0000 Constraint 62 593 0.8000 1.0000 2.0000 0.0000 Constraint 62 584 0.8000 1.0000 2.0000 0.0000 Constraint 62 568 0.8000 1.0000 2.0000 0.0000 Constraint 62 559 0.8000 1.0000 2.0000 0.0000 Constraint 62 545 0.8000 1.0000 2.0000 0.0000 Constraint 62 540 0.8000 1.0000 2.0000 0.0000 Constraint 62 533 0.8000 1.0000 2.0000 0.0000 Constraint 62 526 0.8000 1.0000 2.0000 0.0000 Constraint 62 517 0.8000 1.0000 2.0000 0.0000 Constraint 62 491 0.8000 1.0000 2.0000 0.0000 Constraint 62 483 0.8000 1.0000 2.0000 0.0000 Constraint 62 470 0.8000 1.0000 2.0000 0.0000 Constraint 62 463 0.8000 1.0000 2.0000 0.0000 Constraint 62 455 0.8000 1.0000 2.0000 0.0000 Constraint 62 446 0.8000 1.0000 2.0000 0.0000 Constraint 62 434 0.8000 1.0000 2.0000 0.0000 Constraint 62 391 0.8000 1.0000 2.0000 0.0000 Constraint 62 374 0.8000 1.0000 2.0000 0.0000 Constraint 62 369 0.8000 1.0000 2.0000 0.0000 Constraint 62 117 0.8000 1.0000 2.0000 0.0000 Constraint 62 110 0.8000 1.0000 2.0000 0.0000 Constraint 62 97 0.8000 1.0000 2.0000 0.0000 Constraint 62 86 0.8000 1.0000 2.0000 0.0000 Constraint 62 78 0.8000 1.0000 2.0000 0.0000 Constraint 62 68 0.8000 1.0000 2.0000 0.0000 Constraint 54 691 0.8000 1.0000 2.0000 0.0000 Constraint 54 680 0.8000 1.0000 2.0000 0.0000 Constraint 54 673 0.8000 1.0000 2.0000 0.0000 Constraint 54 667 0.8000 1.0000 2.0000 0.0000 Constraint 54 593 0.8000 1.0000 2.0000 0.0000 Constraint 54 573 0.8000 1.0000 2.0000 0.0000 Constraint 54 568 0.8000 1.0000 2.0000 0.0000 Constraint 54 559 0.8000 1.0000 2.0000 0.0000 Constraint 54 545 0.8000 1.0000 2.0000 0.0000 Constraint 54 540 0.8000 1.0000 2.0000 0.0000 Constraint 54 533 0.8000 1.0000 2.0000 0.0000 Constraint 54 517 0.8000 1.0000 2.0000 0.0000 Constraint 54 512 0.8000 1.0000 2.0000 0.0000 Constraint 54 491 0.8000 1.0000 2.0000 0.0000 Constraint 54 483 0.8000 1.0000 2.0000 0.0000 Constraint 54 470 0.8000 1.0000 2.0000 0.0000 Constraint 54 463 0.8000 1.0000 2.0000 0.0000 Constraint 54 455 0.8000 1.0000 2.0000 0.0000 Constraint 54 446 0.8000 1.0000 2.0000 0.0000 Constraint 54 434 0.8000 1.0000 2.0000 0.0000 Constraint 54 391 0.8000 1.0000 2.0000 0.0000 Constraint 54 374 0.8000 1.0000 2.0000 0.0000 Constraint 54 369 0.8000 1.0000 2.0000 0.0000 Constraint 54 358 0.8000 1.0000 2.0000 0.0000 Constraint 54 295 0.8000 1.0000 2.0000 0.0000 Constraint 54 274 0.8000 1.0000 2.0000 0.0000 Constraint 54 189 0.8000 1.0000 2.0000 0.0000 Constraint 54 117 0.8000 1.0000 2.0000 0.0000 Constraint 54 110 0.8000 1.0000 2.0000 0.0000 Constraint 54 97 0.8000 1.0000 2.0000 0.0000 Constraint 54 86 0.8000 1.0000 2.0000 0.0000 Constraint 54 78 0.8000 1.0000 2.0000 0.0000 Constraint 54 68 0.8000 1.0000 2.0000 0.0000 Constraint 54 62 0.8000 1.0000 2.0000 0.0000 Constraint 43 680 0.8000 1.0000 2.0000 0.0000 Constraint 43 673 0.8000 1.0000 2.0000 0.0000 Constraint 43 601 0.8000 1.0000 2.0000 0.0000 Constraint 43 593 0.8000 1.0000 2.0000 0.0000 Constraint 43 573 0.8000 1.0000 2.0000 0.0000 Constraint 43 568 0.8000 1.0000 2.0000 0.0000 Constraint 43 559 0.8000 1.0000 2.0000 0.0000 Constraint 43 545 0.8000 1.0000 2.0000 0.0000 Constraint 43 533 0.8000 1.0000 2.0000 0.0000 Constraint 43 526 0.8000 1.0000 2.0000 0.0000 Constraint 43 517 0.8000 1.0000 2.0000 0.0000 Constraint 43 483 0.8000 1.0000 2.0000 0.0000 Constraint 43 470 0.8000 1.0000 2.0000 0.0000 Constraint 43 463 0.8000 1.0000 2.0000 0.0000 Constraint 43 455 0.8000 1.0000 2.0000 0.0000 Constraint 43 446 0.8000 1.0000 2.0000 0.0000 Constraint 43 434 0.8000 1.0000 2.0000 0.0000 Constraint 43 427 0.8000 1.0000 2.0000 0.0000 Constraint 43 402 0.8000 1.0000 2.0000 0.0000 Constraint 43 391 0.8000 1.0000 2.0000 0.0000 Constraint 43 374 0.8000 1.0000 2.0000 0.0000 Constraint 43 369 0.8000 1.0000 2.0000 0.0000 Constraint 43 329 0.8000 1.0000 2.0000 0.0000 Constraint 43 324 0.8000 1.0000 2.0000 0.0000 Constraint 43 295 0.8000 1.0000 2.0000 0.0000 Constraint 43 280 0.8000 1.0000 2.0000 0.0000 Constraint 43 243 0.8000 1.0000 2.0000 0.0000 Constraint 43 234 0.8000 1.0000 2.0000 0.0000 Constraint 43 206 0.8000 1.0000 2.0000 0.0000 Constraint 43 197 0.8000 1.0000 2.0000 0.0000 Constraint 43 117 0.8000 1.0000 2.0000 0.0000 Constraint 43 110 0.8000 1.0000 2.0000 0.0000 Constraint 43 97 0.8000 1.0000 2.0000 0.0000 Constraint 43 86 0.8000 1.0000 2.0000 0.0000 Constraint 43 78 0.8000 1.0000 2.0000 0.0000 Constraint 43 68 0.8000 1.0000 2.0000 0.0000 Constraint 43 62 0.8000 1.0000 2.0000 0.0000 Constraint 43 54 0.8000 1.0000 2.0000 0.0000 Constraint 36 691 0.8000 1.0000 2.0000 0.0000 Constraint 36 610 0.8000 1.0000 2.0000 0.0000 Constraint 36 601 0.8000 1.0000 2.0000 0.0000 Constraint 36 593 0.8000 1.0000 2.0000 0.0000 Constraint 36 584 0.8000 1.0000 2.0000 0.0000 Constraint 36 573 0.8000 1.0000 2.0000 0.0000 Constraint 36 568 0.8000 1.0000 2.0000 0.0000 Constraint 36 559 0.8000 1.0000 2.0000 0.0000 Constraint 36 551 0.8000 1.0000 2.0000 0.0000 Constraint 36 545 0.8000 1.0000 2.0000 0.0000 Constraint 36 533 0.8000 1.0000 2.0000 0.0000 Constraint 36 526 0.8000 1.0000 2.0000 0.0000 Constraint 36 517 0.8000 1.0000 2.0000 0.0000 Constraint 36 502 0.8000 1.0000 2.0000 0.0000 Constraint 36 491 0.8000 1.0000 2.0000 0.0000 Constraint 36 483 0.8000 1.0000 2.0000 0.0000 Constraint 36 470 0.8000 1.0000 2.0000 0.0000 Constraint 36 463 0.8000 1.0000 2.0000 0.0000 Constraint 36 455 0.8000 1.0000 2.0000 0.0000 Constraint 36 446 0.8000 1.0000 2.0000 0.0000 Constraint 36 434 0.8000 1.0000 2.0000 0.0000 Constraint 36 427 0.8000 1.0000 2.0000 0.0000 Constraint 36 402 0.8000 1.0000 2.0000 0.0000 Constraint 36 369 0.8000 1.0000 2.0000 0.0000 Constraint 36 358 0.8000 1.0000 2.0000 0.0000 Constraint 36 340 0.8000 1.0000 2.0000 0.0000 Constraint 36 329 0.8000 1.0000 2.0000 0.0000 Constraint 36 324 0.8000 1.0000 2.0000 0.0000 Constraint 36 295 0.8000 1.0000 2.0000 0.0000 Constraint 36 243 0.8000 1.0000 2.0000 0.0000 Constraint 36 234 0.8000 1.0000 2.0000 0.0000 Constraint 36 206 0.8000 1.0000 2.0000 0.0000 Constraint 36 197 0.8000 1.0000 2.0000 0.0000 Constraint 36 183 0.8000 1.0000 2.0000 0.0000 Constraint 36 117 0.8000 1.0000 2.0000 0.0000 Constraint 36 97 0.8000 1.0000 2.0000 0.0000 Constraint 36 86 0.8000 1.0000 2.0000 0.0000 Constraint 36 78 0.8000 1.0000 2.0000 0.0000 Constraint 36 68 0.8000 1.0000 2.0000 0.0000 Constraint 36 62 0.8000 1.0000 2.0000 0.0000 Constraint 36 54 0.8000 1.0000 2.0000 0.0000 Constraint 36 43 0.8000 1.0000 2.0000 0.0000 Constraint 25 626 0.8000 1.0000 2.0000 0.0000 Constraint 25 615 0.8000 1.0000 2.0000 0.0000 Constraint 25 610 0.8000 1.0000 2.0000 0.0000 Constraint 25 601 0.8000 1.0000 2.0000 0.0000 Constraint 25 593 0.8000 1.0000 2.0000 0.0000 Constraint 25 584 0.8000 1.0000 2.0000 0.0000 Constraint 25 573 0.8000 1.0000 2.0000 0.0000 Constraint 25 568 0.8000 1.0000 2.0000 0.0000 Constraint 25 559 0.8000 1.0000 2.0000 0.0000 Constraint 25 551 0.8000 1.0000 2.0000 0.0000 Constraint 25 545 0.8000 1.0000 2.0000 0.0000 Constraint 25 533 0.8000 1.0000 2.0000 0.0000 Constraint 25 526 0.8000 1.0000 2.0000 0.0000 Constraint 25 517 0.8000 1.0000 2.0000 0.0000 Constraint 25 512 0.8000 1.0000 2.0000 0.0000 Constraint 25 491 0.8000 1.0000 2.0000 0.0000 Constraint 25 483 0.8000 1.0000 2.0000 0.0000 Constraint 25 470 0.8000 1.0000 2.0000 0.0000 Constraint 25 463 0.8000 1.0000 2.0000 0.0000 Constraint 25 455 0.8000 1.0000 2.0000 0.0000 Constraint 25 446 0.8000 1.0000 2.0000 0.0000 Constraint 25 434 0.8000 1.0000 2.0000 0.0000 Constraint 25 427 0.8000 1.0000 2.0000 0.0000 Constraint 25 418 0.8000 1.0000 2.0000 0.0000 Constraint 25 402 0.8000 1.0000 2.0000 0.0000 Constraint 25 391 0.8000 1.0000 2.0000 0.0000 Constraint 25 374 0.8000 1.0000 2.0000 0.0000 Constraint 25 369 0.8000 1.0000 2.0000 0.0000 Constraint 25 358 0.8000 1.0000 2.0000 0.0000 Constraint 25 350 0.8000 1.0000 2.0000 0.0000 Constraint 25 340 0.8000 1.0000 2.0000 0.0000 Constraint 25 329 0.8000 1.0000 2.0000 0.0000 Constraint 25 295 0.8000 1.0000 2.0000 0.0000 Constraint 25 274 0.8000 1.0000 2.0000 0.0000 Constraint 25 263 0.8000 1.0000 2.0000 0.0000 Constraint 25 255 0.8000 1.0000 2.0000 0.0000 Constraint 25 243 0.8000 1.0000 2.0000 0.0000 Constraint 25 234 0.8000 1.0000 2.0000 0.0000 Constraint 25 223 0.8000 1.0000 2.0000 0.0000 Constraint 25 212 0.8000 1.0000 2.0000 0.0000 Constraint 25 206 0.8000 1.0000 2.0000 0.0000 Constraint 25 197 0.8000 1.0000 2.0000 0.0000 Constraint 25 189 0.8000 1.0000 2.0000 0.0000 Constraint 25 173 0.8000 1.0000 2.0000 0.0000 Constraint 25 165 0.8000 1.0000 2.0000 0.0000 Constraint 25 130 0.8000 1.0000 2.0000 0.0000 Constraint 25 117 0.8000 1.0000 2.0000 0.0000 Constraint 25 110 0.8000 1.0000 2.0000 0.0000 Constraint 25 97 0.8000 1.0000 2.0000 0.0000 Constraint 25 86 0.8000 1.0000 2.0000 0.0000 Constraint 25 78 0.8000 1.0000 2.0000 0.0000 Constraint 25 68 0.8000 1.0000 2.0000 0.0000 Constraint 25 62 0.8000 1.0000 2.0000 0.0000 Constraint 25 54 0.8000 1.0000 2.0000 0.0000 Constraint 25 43 0.8000 1.0000 2.0000 0.0000 Constraint 25 36 0.8000 1.0000 2.0000 0.0000 Constraint 17 691 0.8000 1.0000 2.0000 0.0000 Constraint 17 626 0.8000 1.0000 2.0000 0.0000 Constraint 17 615 0.8000 1.0000 2.0000 0.0000 Constraint 17 610 0.8000 1.0000 2.0000 0.0000 Constraint 17 601 0.8000 1.0000 2.0000 0.0000 Constraint 17 593 0.8000 1.0000 2.0000 0.0000 Constraint 17 584 0.8000 1.0000 2.0000 0.0000 Constraint 17 573 0.8000 1.0000 2.0000 0.0000 Constraint 17 568 0.8000 1.0000 2.0000 0.0000 Constraint 17 559 0.8000 1.0000 2.0000 0.0000 Constraint 17 545 0.8000 1.0000 2.0000 0.0000 Constraint 17 540 0.8000 1.0000 2.0000 0.0000 Constraint 17 533 0.8000 1.0000 2.0000 0.0000 Constraint 17 526 0.8000 1.0000 2.0000 0.0000 Constraint 17 517 0.8000 1.0000 2.0000 0.0000 Constraint 17 512 0.8000 1.0000 2.0000 0.0000 Constraint 17 491 0.8000 1.0000 2.0000 0.0000 Constraint 17 483 0.8000 1.0000 2.0000 0.0000 Constraint 17 470 0.8000 1.0000 2.0000 0.0000 Constraint 17 463 0.8000 1.0000 2.0000 0.0000 Constraint 17 455 0.8000 1.0000 2.0000 0.0000 Constraint 17 446 0.8000 1.0000 2.0000 0.0000 Constraint 17 434 0.8000 1.0000 2.0000 0.0000 Constraint 17 427 0.8000 1.0000 2.0000 0.0000 Constraint 17 418 0.8000 1.0000 2.0000 0.0000 Constraint 17 402 0.8000 1.0000 2.0000 0.0000 Constraint 17 369 0.8000 1.0000 2.0000 0.0000 Constraint 17 358 0.8000 1.0000 2.0000 0.0000 Constraint 17 340 0.8000 1.0000 2.0000 0.0000 Constraint 17 329 0.8000 1.0000 2.0000 0.0000 Constraint 17 324 0.8000 1.0000 2.0000 0.0000 Constraint 17 295 0.8000 1.0000 2.0000 0.0000 Constraint 17 287 0.8000 1.0000 2.0000 0.0000 Constraint 17 280 0.8000 1.0000 2.0000 0.0000 Constraint 17 274 0.8000 1.0000 2.0000 0.0000 Constraint 17 263 0.8000 1.0000 2.0000 0.0000 Constraint 17 255 0.8000 1.0000 2.0000 0.0000 Constraint 17 243 0.8000 1.0000 2.0000 0.0000 Constraint 17 234 0.8000 1.0000 2.0000 0.0000 Constraint 17 206 0.8000 1.0000 2.0000 0.0000 Constraint 17 197 0.8000 1.0000 2.0000 0.0000 Constraint 17 189 0.8000 1.0000 2.0000 0.0000 Constraint 17 173 0.8000 1.0000 2.0000 0.0000 Constraint 17 165 0.8000 1.0000 2.0000 0.0000 Constraint 17 157 0.8000 1.0000 2.0000 0.0000 Constraint 17 130 0.8000 1.0000 2.0000 0.0000 Constraint 17 86 0.8000 1.0000 2.0000 0.0000 Constraint 17 78 0.8000 1.0000 2.0000 0.0000 Constraint 17 68 0.8000 1.0000 2.0000 0.0000 Constraint 17 62 0.8000 1.0000 2.0000 0.0000 Constraint 17 54 0.8000 1.0000 2.0000 0.0000 Constraint 17 43 0.8000 1.0000 2.0000 0.0000 Constraint 17 36 0.8000 1.0000 2.0000 0.0000 Constraint 17 25 0.8000 1.0000 2.0000 0.0000 Constraint 9 626 0.8000 1.0000 2.0000 0.0000 Constraint 9 615 0.8000 1.0000 2.0000 0.0000 Constraint 9 610 0.8000 1.0000 2.0000 0.0000 Constraint 9 601 0.8000 1.0000 2.0000 0.0000 Constraint 9 584 0.8000 1.0000 2.0000 0.0000 Constraint 9 573 0.8000 1.0000 2.0000 0.0000 Constraint 9 568 0.8000 1.0000 2.0000 0.0000 Constraint 9 559 0.8000 1.0000 2.0000 0.0000 Constraint 9 551 0.8000 1.0000 2.0000 0.0000 Constraint 9 545 0.8000 1.0000 2.0000 0.0000 Constraint 9 533 0.8000 1.0000 2.0000 0.0000 Constraint 9 526 0.8000 1.0000 2.0000 0.0000 Constraint 9 517 0.8000 1.0000 2.0000 0.0000 Constraint 9 502 0.8000 1.0000 2.0000 0.0000 Constraint 9 491 0.8000 1.0000 2.0000 0.0000 Constraint 9 483 0.8000 1.0000 2.0000 0.0000 Constraint 9 470 0.8000 1.0000 2.0000 0.0000 Constraint 9 463 0.8000 1.0000 2.0000 0.0000 Constraint 9 455 0.8000 1.0000 2.0000 0.0000 Constraint 9 446 0.8000 1.0000 2.0000 0.0000 Constraint 9 434 0.8000 1.0000 2.0000 0.0000 Constraint 9 427 0.8000 1.0000 2.0000 0.0000 Constraint 9 418 0.8000 1.0000 2.0000 0.0000 Constraint 9 402 0.8000 1.0000 2.0000 0.0000 Constraint 9 383 0.8000 1.0000 2.0000 0.0000 Constraint 9 374 0.8000 1.0000 2.0000 0.0000 Constraint 9 369 0.8000 1.0000 2.0000 0.0000 Constraint 9 350 0.8000 1.0000 2.0000 0.0000 Constraint 9 340 0.8000 1.0000 2.0000 0.0000 Constraint 9 329 0.8000 1.0000 2.0000 0.0000 Constraint 9 324 0.8000 1.0000 2.0000 0.0000 Constraint 9 319 0.8000 1.0000 2.0000 0.0000 Constraint 9 295 0.8000 1.0000 2.0000 0.0000 Constraint 9 287 0.8000 1.0000 2.0000 0.0000 Constraint 9 280 0.8000 1.0000 2.0000 0.0000 Constraint 9 274 0.8000 1.0000 2.0000 0.0000 Constraint 9 263 0.8000 1.0000 2.0000 0.0000 Constraint 9 255 0.8000 1.0000 2.0000 0.0000 Constraint 9 243 0.8000 1.0000 2.0000 0.0000 Constraint 9 234 0.8000 1.0000 2.0000 0.0000 Constraint 9 223 0.8000 1.0000 2.0000 0.0000 Constraint 9 206 0.8000 1.0000 2.0000 0.0000 Constraint 9 197 0.8000 1.0000 2.0000 0.0000 Constraint 9 189 0.8000 1.0000 2.0000 0.0000 Constraint 9 183 0.8000 1.0000 2.0000 0.0000 Constraint 9 130 0.8000 1.0000 2.0000 0.0000 Constraint 9 117 0.8000 1.0000 2.0000 0.0000 Constraint 9 110 0.8000 1.0000 2.0000 0.0000 Constraint 9 97 0.8000 1.0000 2.0000 0.0000 Constraint 9 78 0.8000 1.0000 2.0000 0.0000 Constraint 9 68 0.8000 1.0000 2.0000 0.0000 Constraint 9 62 0.8000 1.0000 2.0000 0.0000 Constraint 9 54 0.8000 1.0000 2.0000 0.0000 Constraint 9 43 0.8000 1.0000 2.0000 0.0000 Constraint 9 36 0.8000 1.0000 2.0000 0.0000 Constraint 9 25 0.8000 1.0000 2.0000 0.0000 Constraint 9 17 0.8000 1.0000 2.0000 0.0000 Constraint 3 642 0.8000 1.0000 2.0000 0.0000 Constraint 3 626 0.8000 1.0000 2.0000 0.0000 Constraint 3 615 0.8000 1.0000 2.0000 0.0000 Constraint 3 610 0.8000 1.0000 2.0000 0.0000 Constraint 3 601 0.8000 1.0000 2.0000 0.0000 Constraint 3 593 0.8000 1.0000 2.0000 0.0000 Constraint 3 584 0.8000 1.0000 2.0000 0.0000 Constraint 3 573 0.8000 1.0000 2.0000 0.0000 Constraint 3 559 0.8000 1.0000 2.0000 0.0000 Constraint 3 545 0.8000 1.0000 2.0000 0.0000 Constraint 3 540 0.8000 1.0000 2.0000 0.0000 Constraint 3 533 0.8000 1.0000 2.0000 0.0000 Constraint 3 526 0.8000 1.0000 2.0000 0.0000 Constraint 3 517 0.8000 1.0000 2.0000 0.0000 Constraint 3 512 0.8000 1.0000 2.0000 0.0000 Constraint 3 502 0.8000 1.0000 2.0000 0.0000 Constraint 3 491 0.8000 1.0000 2.0000 0.0000 Constraint 3 483 0.8000 1.0000 2.0000 0.0000 Constraint 3 470 0.8000 1.0000 2.0000 0.0000 Constraint 3 463 0.8000 1.0000 2.0000 0.0000 Constraint 3 455 0.8000 1.0000 2.0000 0.0000 Constraint 3 446 0.8000 1.0000 2.0000 0.0000 Constraint 3 434 0.8000 1.0000 2.0000 0.0000 Constraint 3 427 0.8000 1.0000 2.0000 0.0000 Constraint 3 418 0.8000 1.0000 2.0000 0.0000 Constraint 3 410 0.8000 1.0000 2.0000 0.0000 Constraint 3 402 0.8000 1.0000 2.0000 0.0000 Constraint 3 391 0.8000 1.0000 2.0000 0.0000 Constraint 3 383 0.8000 1.0000 2.0000 0.0000 Constraint 3 374 0.8000 1.0000 2.0000 0.0000 Constraint 3 369 0.8000 1.0000 2.0000 0.0000 Constraint 3 350 0.8000 1.0000 2.0000 0.0000 Constraint 3 340 0.8000 1.0000 2.0000 0.0000 Constraint 3 329 0.8000 1.0000 2.0000 0.0000 Constraint 3 324 0.8000 1.0000 2.0000 0.0000 Constraint 3 319 0.8000 1.0000 2.0000 0.0000 Constraint 3 312 0.8000 1.0000 2.0000 0.0000 Constraint 3 306 0.8000 1.0000 2.0000 0.0000 Constraint 3 295 0.8000 1.0000 2.0000 0.0000 Constraint 3 287 0.8000 1.0000 2.0000 0.0000 Constraint 3 280 0.8000 1.0000 2.0000 0.0000 Constraint 3 274 0.8000 1.0000 2.0000 0.0000 Constraint 3 263 0.8000 1.0000 2.0000 0.0000 Constraint 3 255 0.8000 1.0000 2.0000 0.0000 Constraint 3 243 0.8000 1.0000 2.0000 0.0000 Constraint 3 234 0.8000 1.0000 2.0000 0.0000 Constraint 3 223 0.8000 1.0000 2.0000 0.0000 Constraint 3 212 0.8000 1.0000 2.0000 0.0000 Constraint 3 206 0.8000 1.0000 2.0000 0.0000 Constraint 3 197 0.8000 1.0000 2.0000 0.0000 Constraint 3 189 0.8000 1.0000 2.0000 0.0000 Constraint 3 183 0.8000 1.0000 2.0000 0.0000 Constraint 3 173 0.8000 1.0000 2.0000 0.0000 Constraint 3 130 0.8000 1.0000 2.0000 0.0000 Constraint 3 117 0.8000 1.0000 2.0000 0.0000 Constraint 3 110 0.8000 1.0000 2.0000 0.0000 Constraint 3 68 0.8000 1.0000 2.0000 0.0000 Constraint 3 62 0.8000 1.0000 2.0000 0.0000 Constraint 3 54 0.8000 1.0000 2.0000 0.0000 Constraint 3 43 0.8000 1.0000 2.0000 0.0000 Constraint 3 36 0.8000 1.0000 2.0000 0.0000 Constraint 3 25 0.8000 1.0000 2.0000 0.0000 Constraint 3 17 0.8000 1.0000 2.0000 0.0000 Constraint 3 9 0.8000 1.0000 2.0000 0.0000 Done printing distance constraints # command: