InFilePrefix /projects/compbio/experiments/undertaker/atoms-inputs/ ReadTrainingAtoms dunbrack-2191.atoms ReadRotamerLibrary dunbrack-2191.rot InFilePrefix /projects/compbio/experiments/undertaker/spots/ ReadAtomType exp-pdb.types ReadClashTable exp-pdb-2191-2symm.clash SetClashDefinition exp-pdb-2191-2symm InFilePrefix /projects/compbio/experiments/protein-predict/casp7/T0339/ ReadTargetSeq T0339.a2m 1 InFilePrefix /projects/compbio/experiments/protein-predict/casp7/T0339/ Include T0339.t04.undertaker-align.under Include T0339.t06.undertaker-align.under Include T0339.t2k.undertaker-align.under Include T0339.undertaker-align.under Include /cse/guests/palu/test/T0339/manyalignments.under PrintAlignmentsContacts quit