# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0309/ # command:# Making conformation for sequence T0309 numbered 1 through 76 Created new target T0309 from T0309.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0309/ # command:# reading script from file T0309.t04.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bdtA/T0309-2bdtA-t04-global-adpstyle1.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bdtA expands to /projects/compbio/data/pdb/2bdt.pdb.gz 2bdtA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0309 read from 2bdtA/T0309-2bdtA-t04-global-adpstyle1.a2m # 2bdtA read from 2bdtA/T0309-2bdtA-t04-global-adpstyle1.a2m # adding 2bdtA to template set # found chain 2bdtA in template set Warning: unaligning (T0309)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bdtA)G129 Warning: unaligning (T0309)T32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bdtA)G129 Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 1 :M 2bdtA 1 :M # choosing archetypes in rotamer library T0309 2 :ASKKVHQINVKGFFDMDVMEVTEQT 2bdtA 50 :ESDELLALTWKNITDLTVNFLLAQN T0309 33 :YDFKEILSEFNGK 2bdtA 130 :ERCLELVEEFESK T0309 46 :NVSITVKEENELPVKGV 2bdtA 159 :NLNDIVKNLKTNPRFIF Number of specific fragments extracted= 4 number of extra gaps= 0 total=4 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_653448036.pdb -s /var/tmp/to_scwrl_653448036.seq -o /var/tmp/from_scwrl_653448036.pdb > /var/tmp/scwrl_653448036.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_653448036.pdb Number of alignments=1 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pe0A/T0309-1pe0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1pe0A expands to /projects/compbio/data/pdb/1pe0.pdb.gz 1pe0A:# T0309 read from 1pe0A/T0309-1pe0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1pe0A read from 1pe0A/T0309-1pe0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1pe0A to template set # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 T0309 3 :SKKVHQINVKGFFDMDVM 1pe0A 3 :SKRALVILAKGAEEMETV T0309 34 :DFKEILSEFNGKNVSITVKEENELP 1pe0A 21 :IPVDVMRRAGIKVTVAGLAGKDPVQ T0309 64 :MAGD 1pe0A 46 :CSRD Number of specific fragments extracted= 3 number of extra gaps= 0 total=7 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1908518807.pdb -s /var/tmp/to_scwrl_1908518807.seq -o /var/tmp/from_scwrl_1908518807.pdb > /var/tmp/scwrl_1908518807.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1908518807.pdb Number of alignments=2 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bdqA/T0309-2bdqA-t04-global-adpstyle1.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bdqA expands to /projects/compbio/data/pdb/2bdq.pdb.gz 2bdqA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0309 read from 2bdqA/T0309-2bdqA-t04-global-adpstyle1.a2m # 2bdqA read from 2bdqA/T0309-2bdqA-t04-global-adpstyle1.a2m # adding 2bdqA to template set # found chain 2bdqA in template set T0309 1 :MASKKVHQINVKGFFDMDV 2bdqA 1 :MILREFCAENLTDLTRLDK T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGV 2bdqA 55 :ISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGI Number of specific fragments extracted= 2 number of extra gaps= 0 total=9 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1023457753.pdb -s /var/tmp/to_scwrl_1023457753.seq -o /var/tmp/from_scwrl_1023457753.pdb > /var/tmp/scwrl_1023457753.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1023457753.pdb Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hyuA/T0309-1hyuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1hyuA expands to /projects/compbio/data/pdb/1hyu.pdb.gz 1hyuA:# T0309 read from 1hyuA/T0309-1hyuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hyuA read from 1hyuA/T0309-1hyuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1hyuA to template set # found chain 1hyuA in template set T0309 5 :KVHQI 1hyuA 20 :PVELI T0309 20 :MEVTEQTKEA 1hyuA 25 :ATLDDSAKSA T0309 34 :DFKEILSEFNGKNVSITVKEENELPV 1hyuA 35 :EIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEHH 1hyuA 74 :QGPRFAGSPLGHE Number of specific fragments extracted= 4 number of extra gaps= 0 total=13 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_364686248.pdb -s /var/tmp/to_scwrl_364686248.seq -o /var/tmp/from_scwrl_364686248.pdb > /var/tmp/scwrl_364686248.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_364686248.pdb Number of alignments=4 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kkdA/T0309-1kkdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kkdA expands to /projects/compbio/data/pdb/1kkd.pdb.gz 1kkdA:# T0309 read from 1kkdA/T0309-1kkdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1kkdA read from 1kkdA/T0309-1kkdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1kkdA to template set # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 54 :ENELPVKGVEMAGD 1kkdA 78 :LNDQANTLVDLAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=14 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zynA/T0309-1zynA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zynA expands to /projects/compbio/data/pdb/1zyn.pdb.gz 1zynA:# T0309 read from 1zynA/T0309-1zynA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1zynA read from 1zynA/T0309-1zynA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1zynA to template set # found chain 1zynA in template set T0309 9 :INVKGFFDM 1zynA 21 :VELIATLDD T0309 25 :QTK 1zynA 30 :SAK T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPV 1zynA 33 :SAEIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEH 1zynA 74 :QGPRFAGSPLGH Number of specific fragments extracted= 4 number of extra gaps= 0 total=18 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1309383302.pdb -s /var/tmp/to_scwrl_1309383302.seq -o /var/tmp/from_scwrl_1309383302.pdb > /var/tmp/scwrl_1309383302.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1309383302.pdb Number of alignments=5 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1mejA/T0309-1mejA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1mejA expands to /projects/compbio/data/pdb/1mej.pdb.gz 1mejA:# T0309 read from 1mejA/T0309-1mejA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1mejA read from 1mejA/T0309-1mejA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1mejA to template set # found chain 1mejA in template set T0309 32 :TYDFKEILSEFNGKNVSITV 1mejA 117 :GSNAHEQALETGVTVTGCTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=19 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1129033332.pdb -s /var/tmp/to_scwrl_1129033332.seq -o /var/tmp/from_scwrl_1129033332.pdb > /var/tmp/scwrl_1129033332.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1129033332.pdb Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tf7A/T0309-1tf7A-t04-local-adpstyle1.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1tf7A expands to /projects/compbio/data/pdb/1tf7.pdb.gz 1tf7A:# T0309 read from 1tf7A/T0309-1tf7A-t04-local-adpstyle1.a2m # 1tf7A read from 1tf7A/T0309-1tf7A-t04-local-adpstyle1.a2m # adding 1tf7A to template set # found chain 1tf7A in template set Warning: unaligning (T0309)I49 because last residue in template chain is (1tf7A)I497 T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVS 1tf7A 462 :WHDKAIREFMISDKGPDIKDSFRNFERIISGSPTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=20 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1329132132.pdb -s /var/tmp/to_scwrl_1329132132.seq -o /var/tmp/from_scwrl_1329132132.pdb > /var/tmp/scwrl_1329132132.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1329132132.pdb Number of alignments=7 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2d1uA/T0309-2d1uA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2d1uA expands to /projects/compbio/data/pdb/2d1u.pdb.gz 2d1uA:# T0309 read from 2d1uA/T0309-2d1uA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2d1uA read from 2d1uA/T0309-2d1uA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2d1uA to template set # found chain 2d1uA in template set T0309 24 :EQTKEAEYTYDFKEILSE 2d1uA 35 :KQSNGLHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=24 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1280321647.pdb -s /var/tmp/to_scwrl_1280321647.seq -o /var/tmp/from_scwrl_1280321647.pdb > /var/tmp/scwrl_1280321647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1280321647.pdb Number of alignments=8 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tzaA/T0309-1tzaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1tzaA expands to /projects/compbio/data/pdb/1tza.pdb.gz 1tzaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0309 read from 1tzaA/T0309-1tzaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tzaA read from 1tzaA/T0309-1tzaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1tzaA to template set # found chain 1tzaA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVT 1tzaA 77 :PNTAYQYTSGTVLDTPFGIMY T0309 29 :AEYT 1tzaA 98 :GTYG T0309 43 :NGKNVSITVKE 1tzaA 106 :SGEHFNAIIKP T0309 55 :NELPVKGV 1tzaA 117 :FRLATPGL T0309 67 :DPLEHHHHHH 1tzaA 125 :LHLEHHHHHH Number of specific fragments extracted= 5 number of extra gaps= 0 total=29 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_501772890.pdb -s /var/tmp/to_scwrl_501772890.seq -o /var/tmp/from_scwrl_501772890.pdb > /var/tmp/scwrl_501772890.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_501772890.pdb Number of alignments=9 # command:# reading script from file T0309.t06.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fvtA/T0309-2fvtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2fvtA expands to /projects/compbio/data/pdb/2fvt.pdb.gz 2fvtA:# T0309 read from 2fvtA/T0309-2fvtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fvtA read from 2fvtA/T0309-2fvtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2fvtA to template set # found chain 2fvtA in template set T0309 34 :DFKEILSE 2fvtA 108 :TYNIMIGE T0309 44 :GKNVSITVKE 2fvtA 116 :RRRVAAALIA T0309 67 :DPLEHHHHHH 2fvtA 126 :VPLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=32 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1781999753.pdb -s /var/tmp/to_scwrl_1781999753.seq -o /var/tmp/from_scwrl_1781999753.pdb > /var/tmp/scwrl_1781999753.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1781999753.pdb Number of alignments=10 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dyqA/T0309-1dyqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1dyqA/T0309-1dyqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dyqA read from 1dyqA/T0309-1dyqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dyqA in training set T0309 5 :KVHQINVKGFFDMD 1dyqA 48 :RQHTILFKGFFTDH T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSITVKE 1dyqA 62 :SWYNDLLVRFDSKDIVDKYKGKKVDLYGAY Number of specific fragments extracted= 2 number of extra gaps= 0 total=34 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_150517567.pdb -s /var/tmp/to_scwrl_150517567.seq -o /var/tmp/from_scwrl_150517567.pdb > /var/tmp/scwrl_150517567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_150517567.pdb Number of alignments=11 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2d1uA/T0309-2d1uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 2d1uA/T0309-2d1uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2d1uA read from 2d1uA/T0309-2d1uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2d1uA in template set T0309 24 :EQTKEAEYTYDFKEILSE 2d1uA 35 :KQSNGLHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=38 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_212251746.pdb -s /var/tmp/to_scwrl_212251746.seq -o /var/tmp/from_scwrl_212251746.pdb > /var/tmp/scwrl_212251746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_212251746.pdb Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ma3A/T0309-1ma3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ma3A expands to /projects/compbio/data/pdb/1ma3.pdb.gz 1ma3A:# T0309 read from 1ma3A/T0309-1ma3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1ma3A read from 1ma3A/T0309-1ma3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1ma3A to template set # found chain 1ma3A in template set T0309 15 :FDMDVMEVTEQT 1ma3A 119 :GSMDKLDCLDCH T0309 31 :YTYDFKEILSEFNGKNV 1ma3A 131 :ETYDWSEFVEDFNKGEI T0309 52 :KEENELPVKGVEMAGDPL 1ma3A 152 :KCGSYYVKPRVVLFGEPL Number of specific fragments extracted= 3 number of extra gaps= 0 total=41 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1983690367.pdb -s /var/tmp/to_scwrl_1983690367.seq -o /var/tmp/from_scwrl_1983690367.pdb > /var/tmp/scwrl_1983690367.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1983690367.pdb Number of alignments=13 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q59A/T0309-1q59A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1q59A expands to /projects/compbio/data/pdb/1q59.pdb.gz 1q59A:# T0309 read from 1q59A/T0309-1q59A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1q59A read from 1q59A/T0309-1q59A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1q59A to template set # found chain 1q59A in template set T0309 35 :FKEILSEFNG 1q59A 140 :LDGWIHQQGG T0309 54 :ENELP 1q59A 155 :EDNIP T0309 64 :MAGDPLEHHHHHH 1q59A 160 :GDDDDLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=44 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_364319529.pdb -s /var/tmp/to_scwrl_364319529.seq -o /var/tmp/from_scwrl_364319529.pdb > /var/tmp/scwrl_364319529.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_364319529.pdb Number of alignments=14 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1repC/T0309-1repC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1repC expands to /projects/compbio/data/pdb/1rep.pdb.gz 1repC:# T0309 read from 1repC/T0309-1repC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1repC read from 1repC/T0309-1repC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1repC to template set # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1repC 74 :TSAEASKDIRQALKSFAGKEVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=45 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1034514500.pdb -s /var/tmp/to_scwrl_1034514500.seq -o /var/tmp/from_scwrl_1034514500.pdb > /var/tmp/scwrl_1034514500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1034514500.pdb Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2a2pA/T0309-2a2pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2a2pA expands to /projects/compbio/data/pdb/2a2p.pdb.gz 2a2pA:# T0309 read from 2a2pA/T0309-2a2pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2a2pA read from 2a2pA/T0309-2a2pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2a2pA to template set # found chain 2a2pA in template set T0309 15 :FDMDVMEVTEQTKEAEYT 2a2pA 78 :ADPELVLLSRNYQELERI T0309 34 :DFKEILSEFNGKNVS 2a2pA 104 :EINALVQELGFYRKS T0309 52 :KEENELPVKGVEMAG 2a2pA 119 :APEAQVPPEYLWAPA T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=49 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_484238046.pdb -s /var/tmp/to_scwrl_484238046.seq -o /var/tmp/from_scwrl_484238046.pdb > /var/tmp/scwrl_484238046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_484238046.pdb Number of alignments=16 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1m93A/T0309-1m93A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1m93A/T0309-1m93A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1m93A read from 1m93A/T0309-1m93A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSI 1m93A 4 :FREIASSMKGENVFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=50 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a53/T0309-1a53-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1a53 expands to /projects/compbio/data/pdb/1a53.pdb.gz 1a53:Warning: there is no chain 1a53 will retry with 1a53A # T0309 read from 1a53/T0309-1a53-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1a53 read from 1a53/T0309-1a53-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1a53 to template set # found chain 1a53 in template set T0309 33 :YDFKEILSEFNGKNVSITV 1a53 192 :ENQRKLISMIPSNVVKVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1d2oA/T0309-1d2oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1d2oA expands to /projects/compbio/data/pdb/1d2o.pdb.gz 1d2oA:# T0309 read from 1d2oA/T0309-1d2oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1d2oA read from 1d2oA/T0309-1d2oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1d2oA to template set # found chain 1d2oA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKE 1d2oA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKD T0309 43 :NGKNVSITVKEE 1d2oA 593 :EGKKIEYTVTED T0309 58 :PVKGVE 1d2oA 605 :HVKDYT Number of specific fragments extracted= 3 number of extra gaps= 0 total=54 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1775473787.pdb -s /var/tmp/to_scwrl_1775473787.seq -o /var/tmp/from_scwrl_1775473787.pdb > /var/tmp/scwrl_1775473787.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1775473787.pdb Number of alignments=17 # command:# reading script from file T0309.t2k.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hyuA/T0309-1hyuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1hyuA/T0309-1hyuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hyuA read from 1hyuA/T0309-1hyuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hyuA in template set T0309 5 :KVHQI 1hyuA 20 :PVELI T0309 20 :MEVTEQTKEA 1hyuA 25 :ATLDDSAKSA T0309 34 :DFKEILSEFNGKNVSITVKEENELPV 1hyuA 35 :EIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEHH 1hyuA 74 :QGPRFAGSPLGHE Number of specific fragments extracted= 4 number of extra gaps= 0 total=58 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_624549797.pdb -s /var/tmp/to_scwrl_624549797.seq -o /var/tmp/from_scwrl_624549797.pdb > /var/tmp/scwrl_624549797.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_624549797.pdb Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bdtA/T0309-2bdtA-t2k-global-adpstyle1.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 2bdtA/T0309-2bdtA-t2k-global-adpstyle1.a2m # 2bdtA read from 2bdtA/T0309-2bdtA-t2k-global-adpstyle1.a2m # found chain 2bdtA in template set Warning: unaligning (T0309)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bdtA)G129 Warning: unaligning (T0309)T32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bdtA)G129 Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 1 :M 2bdtA 1 :M T0309 2 :ASKKVHQINVKGFFDMDVMEVTEQT 2bdtA 50 :ESDELLALTWKNITDLTVNFLLAQN T0309 33 :YDFKEILSEFNGK 2bdtA 130 :ERCLELVEEFESK T0309 46 :NVSITVKEENELPVKGV 2bdtA 159 :NLNDIVKNLKTNPRFIF Number of specific fragments extracted= 4 number of extra gaps= 0 total=62 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_767066249.pdb -s /var/tmp/to_scwrl_767066249.seq -o /var/tmp/from_scwrl_767066249.pdb > /var/tmp/scwrl_767066249.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_767066249.pdb Number of alignments=19 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bdqA/T0309-2bdqA-t2k-global-adpstyle1.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 2bdqA/T0309-2bdqA-t2k-global-adpstyle1.a2m # 2bdqA read from 2bdqA/T0309-2bdqA-t2k-global-adpstyle1.a2m # found chain 2bdqA in template set T0309 1 :MASKKVHQINVKGFFDMDV 2bdqA 1 :MILREFCAENLTDLTRLDK T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGV 2bdqA 55 :ISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGI Number of specific fragments extracted= 2 number of extra gaps= 0 total=64 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1886086989.pdb -s /var/tmp/to_scwrl_1886086989.seq -o /var/tmp/from_scwrl_1886086989.pdb > /var/tmp/scwrl_1886086989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1886086989.pdb Number of alignments=20 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2d1uA/T0309-2d1uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 2d1uA/T0309-2d1uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2d1uA read from 2d1uA/T0309-2d1uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2d1uA in template set T0309 24 :EQTKEAEYTYDFKEILSE 2d1uA 35 :KQSNGLHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=68 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_739273303.pdb -s /var/tmp/to_scwrl_739273303.seq -o /var/tmp/from_scwrl_739273303.pdb > /var/tmp/scwrl_739273303.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_739273303.pdb Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zynA/T0309-1zynA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1zynA/T0309-1zynA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1zynA read from 1zynA/T0309-1zynA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1zynA in template set T0309 9 :INVKGFFDM 1zynA 21 :VELIATLDD T0309 25 :QTK 1zynA 30 :SAK T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPV 1zynA 33 :SAEIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEH 1zynA 74 :QGPRFAGSPLGH Number of specific fragments extracted= 4 number of extra gaps= 0 total=72 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1750003032.pdb -s /var/tmp/to_scwrl_1750003032.seq -o /var/tmp/from_scwrl_1750003032.pdb > /var/tmp/scwrl_1750003032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1750003032.pdb Number of alignments=22 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1souA/T0309-1souA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1souA expands to /projects/compbio/data/pdb/1sou.pdb.gz 1souA:# T0309 read from 1souA/T0309-1souA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1souA read from 1souA/T0309-1souA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1souA to template set # found chain 1souA in template set T0309 34 :DFKEILSEFNG 1souA 135 :YYDRLLKRVKG T0309 45 :KNVSITVKEENELPVK 1souA 167 :IPVDVLVTEKNVRRLR T0309 65 :AGDPLEHHHHHH 1souA 183 :DGRSLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=75 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1415505362.pdb -s /var/tmp/to_scwrl_1415505362.seq -o /var/tmp/from_scwrl_1415505362.pdb > /var/tmp/scwrl_1415505362.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1415505362.pdb Number of alignments=23 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tzaA/T0309-1tzaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1tzaA/T0309-1tzaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1tzaA read from 1tzaA/T0309-1tzaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1tzaA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVT 1tzaA 77 :PNTAYQYTSGTVLDTPFGIMY T0309 29 :AEYT 1tzaA 98 :GTYG T0309 43 :NGKNVSITVKE 1tzaA 106 :SGEHFNAIIKP T0309 55 :NELPVKGV 1tzaA 117 :FRLATPGL T0309 67 :DPLEHHHHHH 1tzaA 125 :LHLEHHHHHH Number of specific fragments extracted= 5 number of extra gaps= 0 total=80 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_78012497.pdb -s /var/tmp/to_scwrl_78012497.seq -o /var/tmp/from_scwrl_78012497.pdb > /var/tmp/scwrl_78012497.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_78012497.pdb Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1esfA/T0309-1esfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1esfA expands to /projects/compbio/data/pdb/1esf.pdb.gz 1esfA:# T0309 read from 1esfA/T0309-1esfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1esfA read from 1esfA/T0309-1esfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1esfA to template set # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)T26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 27 :KEAEYTYDFKEILSEFNGKNVSITV 1esfA 65 :NDLLVDFDSKDIVDKYKGKKVDLYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=82 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_552910253.pdb -s /var/tmp/to_scwrl_552910253.seq -o /var/tmp/from_scwrl_552910253.pdb > /var/tmp/scwrl_552910253.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_552910253.pdb Number of alignments=25 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fvtA/T0309-2fvtA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 2fvtA/T0309-2fvtA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fvtA read from 2fvtA/T0309-2fvtA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fvtA in template set T0309 34 :DFKEILSE 2fvtA 108 :TYNIMIGE T0309 44 :GKNVSITVKE 2fvtA 116 :RRRVAAALIA T0309 67 :DPLEHHHHHH 2fvtA 126 :VPLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=85 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1671294891.pdb -s /var/tmp/to_scwrl_1671294891.seq -o /var/tmp/from_scwrl_1671294891.pdb > /var/tmp/scwrl_1671294891.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1671294891.pdb Number of alignments=26 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tf7A/T0309-1tf7A-t2k-local-adpstyle1.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1tf7A/T0309-1tf7A-t2k-local-adpstyle1.a2m # 1tf7A read from 1tf7A/T0309-1tf7A-t2k-local-adpstyle1.a2m # found chain 1tf7A in template set Warning: unaligning (T0309)I49 because last residue in template chain is (1tf7A)I497 T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVS 1tf7A 462 :WHDKAIREFMISDKGPDIKDSFRNFERIISGSPTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=86 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1344247685.pdb -s /var/tmp/to_scwrl_1344247685.seq -o /var/tmp/from_scwrl_1344247685.pdb > /var/tmp/scwrl_1344247685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1344247685.pdb Number of alignments=27 # command:# reading script from file T0309.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2d1uA/T0309-2d1uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 2d1uA/T0309-2d1uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2d1uA read from 2d1uA/T0309-2d1uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2d1uA in template set T0309 24 :EQTKEAEYTYDFKEILSE 2d1uA 35 :KQSNGLHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=90 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1795519124.pdb -s /var/tmp/to_scwrl_1795519124.seq -o /var/tmp/from_scwrl_1795519124.pdb > /var/tmp/scwrl_1795519124.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1795519124.pdb Number of alignments=28 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fvtA/T0309-2fvtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 2fvtA/T0309-2fvtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fvtA read from 2fvtA/T0309-2fvtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fvtA in template set T0309 34 :DFKEILSE 2fvtA 108 :TYNIMIGE T0309 44 :GKNVSITVKE 2fvtA 116 :RRRVAAALIA T0309 67 :DPLEHHHHHH 2fvtA 126 :VPLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=93 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_661761152.pdb -s /var/tmp/to_scwrl_661761152.seq -o /var/tmp/from_scwrl_661761152.pdb > /var/tmp/scwrl_661761152.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_661761152.pdb Number of alignments=29 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hyuA/T0309-1hyuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1hyuA/T0309-1hyuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1hyuA read from 1hyuA/T0309-1hyuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1hyuA in template set T0309 5 :KVHQI 1hyuA 20 :PVELI T0309 20 :MEVTEQTKEA 1hyuA 25 :ATLDDSAKSA T0309 34 :DFKEILSEFNGKNVSITVKEENELPV 1hyuA 35 :EIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEHH 1hyuA 74 :QGPRFAGSPLGHE Number of specific fragments extracted= 4 number of extra gaps= 0 total=97 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_474613996.pdb -s /var/tmp/to_scwrl_474613996.seq -o /var/tmp/from_scwrl_474613996.pdb > /var/tmp/scwrl_474613996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_474613996.pdb Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dyqA/T0309-1dyqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1dyqA/T0309-1dyqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1dyqA read from 1dyqA/T0309-1dyqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1dyqA in training set T0309 5 :KVHQINVKGFFDMD 1dyqA 48 :RQHTILFKGFFTDH T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSITVKE 1dyqA 62 :SWYNDLLVRFDSKDIVDKYKGKKVDLYGAY Number of specific fragments extracted= 2 number of extra gaps= 0 total=99 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_425245975.pdb -s /var/tmp/to_scwrl_425245975.seq -o /var/tmp/from_scwrl_425245975.pdb > /var/tmp/scwrl_425245975.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_425245975.pdb Number of alignments=31 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1m93A/T0309-1m93A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1m93A/T0309-1m93A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1m93A read from 1m93A/T0309-1m93A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSI 1m93A 4 :FREIASSMKGENVFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=100 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zynA/T0309-1zynA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1zynA/T0309-1zynA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1zynA read from 1zynA/T0309-1zynA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1zynA in template set T0309 9 :INVKGFFDM 1zynA 21 :VELIATLDD T0309 25 :QTK 1zynA 30 :SAK T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPV 1zynA 33 :SAEIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEH 1zynA 74 :QGPRFAGSPLGH Number of specific fragments extracted= 4 number of extra gaps= 0 total=104 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1315209187.pdb -s /var/tmp/to_scwrl_1315209187.seq -o /var/tmp/from_scwrl_1315209187.pdb > /var/tmp/scwrl_1315209187.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1315209187.pdb Number of alignments=32 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1repC/T0309-1repC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1repC/T0309-1repC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1repC read from 1repC/T0309-1repC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1repC 74 :TSAEASKDIRQALKSFAGKEVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=105 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_235649157.pdb -s /var/tmp/to_scwrl_235649157.seq -o /var/tmp/from_scwrl_235649157.pdb > /var/tmp/scwrl_235649157.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_235649157.pdb Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1y96B/T0309-1y96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1y96B expands to /projects/compbio/data/pdb/1y96.pdb.gz 1y96B:# T0309 read from 1y96B/T0309-1y96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1y96B read from 1y96B/T0309-1y96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1y96B to template set # found chain 1y96B in template set T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPV 1y96B 55 :EQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=106 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1448703728.pdb -s /var/tmp/to_scwrl_1448703728.seq -o /var/tmp/from_scwrl_1448703728.pdb > /var/tmp/scwrl_1448703728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1448703728.pdb Number of alignments=34 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2a2pA/T0309-2a2pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 2a2pA/T0309-2a2pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2a2pA read from 2a2pA/T0309-2a2pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2a2pA in template set T0309 15 :FDMDVMEVTEQTKEAEYT 2a2pA 78 :ADPELVLLSRNYQELERI T0309 34 :DFKEILSEFNGKNVS 2a2pA 104 :EINALVQELGFYRKS T0309 52 :KEENELPVKGVEMAG 2a2pA 119 :APEAQVPPEYLWAPA T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=110 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1679895435.pdb -s /var/tmp/to_scwrl_1679895435.seq -o /var/tmp/from_scwrl_1679895435.pdb > /var/tmp/scwrl_1679895435.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1679895435.pdb Number of alignments=35 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q59A/T0309-1q59A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1q59A/T0309-1q59A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1q59A read from 1q59A/T0309-1q59A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1q59A in template set T0309 35 :FKEILSEFNG 1q59A 140 :LDGWIHQQGG T0309 54 :ENELP 1q59A 155 :EDNIP T0309 64 :MAGDPLEHHHHHH 1q59A 160 :GDDDDLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=113 # request to SCWRL produces command: ulimit -t 69 ; scwrl3 -i /var/tmp/to_scwrl_1545032459.pdb -s /var/tmp/to_scwrl_1545032459.seq -o /var/tmp/from_scwrl_1545032459.pdb > /var/tmp/scwrl_1545032459.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1545032459.pdb Number of alignments=36 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0309//projects/compbio/experiments/protein-predict/casp7/constraints/T0309/manyalignments.under or /projects/compbio/experiments/protein-predict/casp7/T0309//projects/compbio/experiments/protein-predict/casp7/constraints/T0309/manyalignments.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints/T0309/manyalignments.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints/T0309/manyalignments.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1iz5A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1iz5A expands to /projects/compbio/data/pdb/1iz5.pdb.gz 1iz5A:# T0309 read from 1iz5A/merged-a2m # 1iz5A read from 1iz5A/merged-a2m # adding 1iz5A to template set # found chain 1iz5A in template set Warning: unaligning (T0309)L69 because last residue in template chain is (1iz5A)R246 T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVS 1iz5A 167 :KAEGETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKA T0309 49 :ITVKEENELPVKGVEMAGD 1iz5A 217 :VTIKFGNEMPMQMEYYIRD T0309 68 :P 1iz5A 245 :P Number of specific fragments extracted= 3 number of extra gaps= 0 total=116 Number of alignments=37 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 3 :SKKVHQ 1iz5A 43 :PSRVVL T0309 9 :INVKGFFDM 1iz5A 71 :VNLDHLKKI T0309 18 :DVM 1iz5A 97 :NFL T0309 21 :EVTEQTK 1iz5A 112 :RVPLIDV T0309 28 :EAEYT 1iz5A 127 :ELPFT T0309 33 :YDFKEILSEFN 1iz5A 139 :EVLKAAVKAAS T0309 44 :GKNVSITVKEEN 1iz5A 152 :SDSIKFIARENE T0309 57 :LPVKG 1iz5A 164 :FIMKA T0309 62 :VEMAGDP 1iz5A 177 :IKLTLED T0309 69 :LEHHHHHH 1iz5A 229 :MEYYIRDE Number of specific fragments extracted= 10 number of extra gaps= 0 total=126 Number of alignments=38 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 10 :NVKGFFDMDVMEVTEQTKEAEYTYDFKEIL 1iz5A 176 :EIKLTLEDEGLLDIEVQEETKSAYGVSYLS Number of specific fragments extracted= 1 number of extra gaps= 0 total=127 Number of alignments=39 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 10 :NVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKN 1iz5A 176 :EIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLG T0309 47 :VSITVKEE 1iz5A 217 :VTIKFGNE Number of specific fragments extracted= 2 number of extra gaps= 0 total=129 Number of alignments=40 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set Warning: unaligning (T0309)V19 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iz5A)P126 Warning: unaligning (T0309)M20 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iz5A)P126 T0309 1 :MASKKVHQINV 1iz5A 41 :MDPSRVVLIDL T0309 12 :KGFFDMD 1iz5A 113 :VPLIDVE T0309 21 :EVTEQTKEAEYTYDFKEILSEFN 1iz5A 127 :ELPFTAKVVVLGEVLKAAVKAAS T0309 44 :GKNVSITVK 1iz5A 152 :SDSIKFIAR T0309 54 :ENELPVKGVEMAGDPLEHHHHHH 1iz5A 161 :ENEFIMKAEGETQEVEIKLTLED Number of specific fragments extracted= 5 number of extra gaps= 0 total=134 Number of alignments=41 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set Warning: unaligning (T0309)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iz5A)P126 T0309 1 :MASKKVHQI 1iz5A 41 :MDPSRVVLI T0309 10 :NVKGFFDM 1iz5A 72 :NLDHLKKI T0309 18 :DVMEVTEQ 1iz5A 97 :NFLEITIQ T0309 26 :T 1iz5A 118 :V T0309 28 :EAEYT 1iz5A 127 :ELPFT T0309 33 :YDFKEILSEFN 1iz5A 139 :EVLKAAVKAAS T0309 44 :GKNVSITVKEEN 1iz5A 152 :SDSIKFIARENE T0309 57 :LPVKG 1iz5A 164 :FIMKA T0309 62 :VEMA 1iz5A 177 :IKLT T0309 66 :GDPLEHHHHHH 1iz5A 183 :DEGLLDIEVQE Number of specific fragments extracted= 10 number of extra gaps= 0 total=144 Number of alignments=42 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVK 1iz5A 174 :EVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADEVT Number of specific fragments extracted= 1 number of extra gaps= 0 total=145 Number of alignments=43 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 9 :INVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKN 1iz5A 175 :VEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLG T0309 47 :VSITVKEE 1iz5A 217 :VTIKFGNE Number of specific fragments extracted= 2 number of extra gaps= 0 total=147 Number of alignments=44 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 1 :MASKKVHQINVKGFFDM 1iz5A 63 :VVEPETIGVNLDHLKKI T0309 18 :DVMEVTEQT 1iz5A 97 :NFLEITIQG T0309 30 :EYTYDFKEILSEFN 1iz5A 106 :TATRTFRVPLIDVE T0309 44 :GKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1iz5A 152 :SDSIKFIARENEFIMKAEGETQEVEIKLTLEDE Number of specific fragments extracted= 4 number of extra gaps= 0 total=151 Number of alignments=45 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 1 :MASKKVHQINV 1iz5A 41 :MDPSRVVLIDL T0309 12 :KGFFDM 1iz5A 74 :DHLKKI T0309 18 :DVMEVTEQT 1iz5A 97 :NFLEITIQG T0309 28 :EAEY 1iz5A 127 :ELPF T0309 32 :TYDFKEILSEFN 1iz5A 138 :GEVLKAAVKAAS T0309 44 :GKNVSITVKEENELPVKGVEMAGDPLEHHH 1iz5A 152 :SDSIKFIARENEFIMKAEGETQEVEIKLTL T0309 74 :HH 1iz5A 189 :IE T0309 76 :H 1iz5A 246 :R Number of specific fragments extracted= 8 number of extra gaps= 0 total=159 Number of alignments=46 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 34 :DFKEILSEFNGKNVSITVKEEN 1iz5A 75 :HLKKILKRGKAKDTLILKKGEE Number of specific fragments extracted= 1 number of extra gaps= 0 total=160 Number of alignments=47 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 35 :FKEILSEFNGKNVSI 1iz5A 76 :LKKILKRGKAKDTLI Number of specific fragments extracted= 1 number of extra gaps= 0 total=161 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEIL 1iz5A 184 :EGLLDIEVQEETKSAYGVSYLSDMVKGL T0309 44 :GKNVSITVKEENELPVK 1iz5A 212 :GKADEVTIKFGNEMPMQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=163 Number of alignments=48 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEI 1iz5A 184 :EGLLDIEVQEETKSAYGVSYLSDMVKG T0309 43 :NGKNVSITVKEENELPVK 1iz5A 211 :LGKADEVTIKFGNEMPMQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=165 Number of alignments=49 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1iz5A)P2 T0309 3 :SKKVHQI 1iz5A 3 :FEIVFEG T0309 10 :NVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEM 1iz5A 19 :TASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNL T0309 67 :DPLEHHHHHH 1iz5A 74 :DHLKKILKRG Number of specific fragments extracted= 3 number of extra gaps= 0 total=168 Number of alignments=50 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1iz5A)P2 T0309 3 :SKKVHQ 1iz5A 3 :FEIVFE T0309 10 :NVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELP 1iz5A 19 :TASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPE T0309 64 :MAGDPLEHHHH 1iz5A 68 :TIGVNLDHLKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=171 Number of alignments=51 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1iz5A)P2 Warning: unaligning (T0309)M64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iz5A)P126 Warning: unaligning (T0309)E70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iz5A)P126 T0309 3 :SKKVHQINVKGFFD 1iz5A 21 :SKLIDEAAFKVTED T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKN 1iz5A 58 :FSKYEVVEPETIGVNLDHLKKILKRGKAKD T0309 47 :VSITVKEEN 1iz5A 99 :LEITIQGTA T0309 56 :ELPVKGVE 1iz5A 112 :RVPLIDVE T0309 71 :HHH 1iz5A 127 :ELP Number of specific fragments extracted= 5 number of extra gaps= 0 total=176 Number of alignments=52 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1iz5A)P2 Warning: unaligning (T0309)M64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iz5A)P126 Warning: unaligning (T0309)E70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iz5A)P126 T0309 7 :HQINVKG 1iz5A 3 :FEIVFEG T0309 14 :FFDMDVMEVTEQ 1iz5A 23 :LIDEAAFKVTED T0309 26 :TKEAEYTYDFKEILSEFNG 1iz5A 64 :VEPETIGVNLDHLKKILKR T0309 45 :KNVSITVK 1iz5A 97 :NFLEITIQ T0309 53 :EENELPVKGVE 1iz5A 109 :RTFRVPLIDVE T0309 71 :HHH 1iz5A 127 :ELP Number of specific fragments extracted= 6 number of extra gaps= 0 total=182 Number of alignments=53 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEIL 1iz5A 184 :EGLLDIEVQEETKSAYGVSYLSDMVKGL T0309 44 :GKNVSITVKEENELPVK 1iz5A 212 :GKADEVTIKFGNEMPMQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=184 Number of alignments=54 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEI 1iz5A 184 :EGLLDIEVQEETKSAYGVSYLSDMVKG T0309 43 :NGKNVSITVKEENELPVK 1iz5A 211 :LGKADEVTIKFGNEMPMQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=186 Number of alignments=55 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 34 :DFKEILSEFNGKNVSITVK 1iz5A 75 :HLKKILKRGKAKDTLILKK T0309 53 :EENEL 1iz5A 95 :EENFL Number of specific fragments extracted= 2 number of extra gaps= 0 total=188 Number of alignments=56 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 13 :GFFDM 1iz5A 185 :GLLDI T0309 21 :EVTEQTK 1iz5A 190 :EVQEETK T0309 31 :YTYDFKEILSEFNG 1iz5A 197 :SAYGVSYLSDMVKG T0309 45 :KNVSITVKEENELPV 1iz5A 213 :KADEVTIKFGNEMPM Number of specific fragments extracted= 4 number of extra gaps= 0 total=192 Number of alignments=57 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1iz5A)P2 T0309 3 :SKKVHQI 1iz5A 3 :FEIVFEG T0309 10 :NVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEM 1iz5A 19 :TASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNL T0309 67 :DPLEHHHHHH 1iz5A 74 :DHLKKILKRG Number of specific fragments extracted= 3 number of extra gaps= 0 total=195 Number of alignments=58 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1iz5A)P2 T0309 3 :SKKVHQ 1iz5A 3 :FEIVFE T0309 10 :NVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELP 1iz5A 19 :TASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPE T0309 64 :MAGDPLEHHHH 1iz5A 68 :TIGVNLDHLKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=198 Number of alignments=59 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1iz5A)P2 Warning: unaligning (T0309)M64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iz5A)P126 Warning: unaligning (T0309)E70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iz5A)P126 T0309 3 :SKKVHQINVKGFFD 1iz5A 21 :SKLIDEAAFKVTED T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKN 1iz5A 58 :FSKYEVVEPETIGVNLDHLKKILKRGKAKD T0309 47 :VSITVKEEN 1iz5A 99 :LEITIQGTA T0309 56 :ELPVKGVE 1iz5A 112 :RVPLIDVE T0309 71 :HHH 1iz5A 127 :ELP Number of specific fragments extracted= 5 number of extra gaps= 0 total=203 Number of alignments=60 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1iz5A)P2 Warning: unaligning (T0309)M64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iz5A)P126 Warning: unaligning (T0309)E70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iz5A)P126 T0309 7 :HQINVKG 1iz5A 3 :FEIVFEG T0309 14 :FFDMDVMEVTEQ 1iz5A 23 :LIDEAAFKVTED T0309 26 :TKEAEYTYDFKEILSEFNG 1iz5A 64 :VEPETIGVNLDHLKKILKR T0309 45 :KNVSITVK 1iz5A 97 :NFLEITIQ T0309 53 :EENELPVKGVE 1iz5A 109 :RTFRVPLIDVE T0309 71 :HHH 1iz5A 127 :ELP Number of specific fragments extracted= 6 number of extra gaps= 0 total=209 Number of alignments=61 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEIL 1iz5A 184 :EGLLDIEVQEETKSAYGVSYLSDMVKGL T0309 44 :GKNVSITVKEENELPVK 1iz5A 212 :GKADEVTIKFGNEMPMQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=211 Number of alignments=62 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEI 1iz5A 184 :EGLLDIEVQEETKSAYGVSYLSDMVKG T0309 43 :NGKNVSITVKEENELPVK 1iz5A 211 :LGKADEVTIKFGNEMPMQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=213 Number of alignments=63 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 34 :DFKEILSEFNGKNVSITVK 1iz5A 75 :HLKKILKRGKAKDTLILKK T0309 53 :EENEL 1iz5A 95 :EENFL Number of specific fragments extracted= 2 number of extra gaps= 0 total=215 Number of alignments=64 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 13 :GFFDM 1iz5A 185 :GLLDI T0309 21 :EVTEQTK 1iz5A 190 :EVQEETK T0309 31 :YTYDFKEILSEFNG 1iz5A 197 :SAYGVSYLSDMVKG T0309 45 :KNVSITVKEENELPV 1iz5A 213 :KADEVTIKFGNEMPM Number of specific fragments extracted= 4 number of extra gaps= 0 total=219 Number of alignments=65 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1iz5A)P2 T0309 3 :SKKVHQI 1iz5A 3 :FEIVFEG T0309 10 :NVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEM 1iz5A 19 :TASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNL T0309 67 :DPLEHHHHHH 1iz5A 74 :DHLKKILKRG Number of specific fragments extracted= 3 number of extra gaps= 0 total=222 Number of alignments=66 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1iz5A)P2 T0309 3 :SKKVHQ 1iz5A 3 :FEIVFE T0309 10 :NVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELP 1iz5A 19 :TASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPE T0309 64 :MAGDPLEHHHH 1iz5A 68 :TIGVNLDHLKK Number of specific fragments extracted= 3 number of extra gaps= 0 total=225 Number of alignments=67 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1iz5A)P2 Warning: unaligning (T0309)M64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iz5A)P126 Warning: unaligning (T0309)E70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iz5A)P126 T0309 5 :KVHQINVKG 1iz5A 23 :LIDEAAFKV T0309 14 :F 1iz5A 41 :M T0309 15 :FD 1iz5A 53 :LP T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKN 1iz5A 58 :FSKYEVVEPETIGVNLDHLKKILKRGKAKD T0309 47 :VSITVKEEN 1iz5A 99 :LEITIQGTA T0309 56 :ELPVKGVE 1iz5A 112 :RVPLIDVE T0309 71 :HHH 1iz5A 127 :ELP Number of specific fragments extracted= 7 number of extra gaps= 0 total=232 Number of alignments=68 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1iz5A)P2 Warning: unaligning (T0309)M64 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1iz5A)P126 Warning: unaligning (T0309)E70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1iz5A)P126 T0309 7 :HQINVKG 1iz5A 3 :FEIVFEG T0309 14 :FFDMDVMEVTEQ 1iz5A 23 :LIDEAAFKVTED T0309 26 :TKEAEYTYDFKEILSEFNG 1iz5A 64 :VEPETIGVNLDHLKKILKR T0309 45 :KNVSITVK 1iz5A 97 :NFLEITIQ T0309 53 :EENELPVKGVE 1iz5A 109 :RTFRVPLIDVE T0309 71 :HHH 1iz5A 127 :ELP Number of specific fragments extracted= 6 number of extra gaps= 0 total=238 Number of alignments=69 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEIL 1iz5A 184 :EGLLDIEVQEETKSAYGVSYLSDMVKGL T0309 44 :GKNVSITVKEENELPVK 1iz5A 212 :GKADEVTIKFGNEMPMQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=240 Number of alignments=70 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEI 1iz5A 184 :EGLLDIEVQEETKSAYGVSYLSDMVKG T0309 43 :NGKNVSITVKEENELPVK 1iz5A 211 :LGKADEVTIKFGNEMPMQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=242 Number of alignments=71 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVK 1iz5A 61 :YEVVEPETIGVNLDHLKKILKRGKAKDTLILKK T0309 53 :EENEL 1iz5A 95 :EENFL Number of specific fragments extracted= 2 number of extra gaps= 0 total=244 Number of alignments=72 # 1iz5A read from 1iz5A/merged-a2m # found chain 1iz5A in template set T0309 13 :GFFDM 1iz5A 185 :GLLDI T0309 21 :EVTEQTK 1iz5A 190 :EVQEETK T0309 31 :YTYDFKEILSEFNG 1iz5A 197 :SAYGVSYLSDMVKG T0309 45 :KNVSITVKEENELPV 1iz5A 213 :KADEVTIKFGNEMPM Number of specific fragments extracted= 4 number of extra gaps= 0 total=248 Number of alignments=73 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wmhB/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1wmhB/merged-a2m # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)H7 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNG 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ T0309 45 :KNVSITVK 1wmhB 53 :PGLDVLLG T0309 53 :EENELPVKGVEMAGDPLEHHHHHH 1wmhB 72 :TNDDSLHRALASGPPPLRLLVQKR Number of specific fragments extracted= 3 number of extra gaps= 0 total=251 Number of alignments=74 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)H7 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNG 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ T0309 45 :KNVSITVK 1wmhB 53 :PGLDVLLG T0309 53 :E 1wmhB 65 :H T0309 54 :ENELPVKGVEMAGDPLEHHHHHH 1wmhB 73 :NDDSLHRALASGPPPLRLLVQKR Number of specific fragments extracted= 4 number of extra gaps= 0 total=255 Number of alignments=75 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set T0309 9 :INVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNG 1wmhB 16 :VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=256 Number of alignments=76 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set T0309 28 :EAEYTYDFKEILS 1wmhB 35 :SVSGFQEFSRLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=257 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)H7 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEIL 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLL T0309 40 :SEFNGKNVSIT 1wmhB 62 :TDAHGDLLPLT T0309 54 :ENELPVKGVEMAGDPLEHHHHHH 1wmhB 73 :NDDSLHRALASGPPPLRLLVQKR Number of specific fragments extracted= 3 number of extra gaps= 0 total=260 Number of alignments=77 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)H7 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEF 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAV T0309 43 :NGKNVSITVKE 1wmhB 53 :PGLDVLLGYTD T0309 54 :ENEL 1wmhB 66 :GDLL T0309 58 :PVKGVEMAGDPLEHHHHHH 1wmhB 77 :LHRALASGPPPLRLLVQKR Number of specific fragments extracted= 4 number of extra gaps= 0 total=264 Number of alignments=78 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set T0309 5 :KVHQIN 1wmhB 48 :AVHQIP Number of specific fragments extracted= 1 number of extra gaps= 0 total=265 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=265 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)H7 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNG 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ T0309 45 :KNVSITVK 1wmhB 53 :PGLDVLLG T0309 53 :EENELPVKGVEMAGDPLEHHHHHH 1wmhB 72 :TNDDSLHRALASGPPPLRLLVQKR Number of specific fragments extracted= 3 number of extra gaps= 0 total=268 Number of alignments=79 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)H7 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNG 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ T0309 45 :KNVSITVK 1wmhB 53 :PGLDVLLG T0309 53 :E 1wmhB 63 :D T0309 54 :ENELP 1wmhB 66 :GDLLP T0309 59 :VKGVEMAGDPLEHHHHHH 1wmhB 78 :HRALASGPPPLRLLVQKR Number of specific fragments extracted= 5 number of extra gaps= 0 total=273 Number of alignments=80 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set T0309 9 :INVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNG 1wmhB 16 :VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=274 Number of alignments=81 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEILS 1wmhB 19 :KSKFDAEFRRFALPRASVSGFQEFSRLLR Number of specific fragments extracted= 1 number of extra gaps= 0 total=275 Number of alignments=82 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set T0309 4 :KKVHQI 1wmhB 47 :RAVHQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=276 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=276 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)H7 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSE 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRA T0309 42 :FNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1wmhB 61 :YTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKR Number of specific fragments extracted= 2 number of extra gaps= 0 total=278 Number of alignments=83 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)H7 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILS 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLR T0309 41 :EFNGKNVSITVKE 1wmhB 51 :QIPGLDVLLGYTD T0309 54 :ENELPV 1wmhB 66 :GDLLPL T0309 60 :KGVEMAGDPLEHHHHHH 1wmhB 79 :RALASGPPPLRLLVQKR Number of specific fragments extracted= 4 number of extra gaps= 0 total=282 Number of alignments=84 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)K5 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILS 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLR T0309 41 :EFNGKNVSITVKEE 1wmhB 51 :QIPGLDVLLGYTDA T0309 55 :NELPVKG 1wmhB 67 :DLLPLTN T0309 64 :MAGDPLE 1wmhB 81 :LASGPPP T0309 71 :HHHHHH 1wmhB 90 :LLVQKR Number of specific fragments extracted= 5 number of extra gaps= 0 total=287 Number of alignments=85 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)K5 because first residue in template chain is (1wmhB)S14 T0309 6 :V 1wmhB 15 :I T0309 9 :INVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEF 1wmhB 16 :VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAV T0309 43 :NGKNVSITVKEE 1wmhB 53 :PGLDVLLGYTDA T0309 55 :NELPVKG 1wmhB 67 :DLLPLTN T0309 63 :EMAGDPLEHHHHHH 1wmhB 82 :ASGPPPLRLLVQKR Number of specific fragments extracted= 5 number of extra gaps= 0 total=292 Number of alignments=86 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set T0309 4 :KKVHQI 1wmhB 47 :RAVHQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=293 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=293 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)H7 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILS 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLR T0309 41 :EFNGKNVSITVKEE 1wmhB 51 :QIPGLDVLLGYTDA T0309 55 :NELPV 1wmhB 67 :DLLPL Number of specific fragments extracted= 3 number of extra gaps= 0 total=296 Number of alignments=87 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEF 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAV T0309 43 :NGKNVSITVKEE 1wmhB 53 :PGLDVLLGYTDA T0309 55 :NELPV 1wmhB 67 :DLLPL Number of specific fragments extracted= 3 number of extra gaps= 0 total=299 Number of alignments=88 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)H7 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSE 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRA T0309 42 :FNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1wmhB 61 :YTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKR Number of specific fragments extracted= 2 number of extra gaps= 0 total=301 Number of alignments=89 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)H7 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILS 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLR T0309 41 :EFNGKNVSITVKE 1wmhB 51 :QIPGLDVLLGYTD T0309 54 :ENELPV 1wmhB 66 :GDLLPL T0309 60 :KGVEMAGDPLEHHHHHH 1wmhB 79 :RALASGPPPLRLLVQKR Number of specific fragments extracted= 4 number of extra gaps= 0 total=305 Number of alignments=90 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)K5 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILS 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLR T0309 41 :EFNGKNVSITVKEE 1wmhB 51 :QIPGLDVLLGYTDA T0309 55 :NELPVKG 1wmhB 67 :DLLPLTN T0309 64 :MAGDPLE 1wmhB 81 :LASGPPP T0309 71 :HHHHHH 1wmhB 90 :LLVQKR Number of specific fragments extracted= 5 number of extra gaps= 0 total=310 Number of alignments=91 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)K5 because first residue in template chain is (1wmhB)S14 T0309 6 :V 1wmhB 15 :I T0309 9 :INVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEF 1wmhB 16 :VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAV T0309 43 :NGKNVSITVKEE 1wmhB 53 :PGLDVLLGYTDA T0309 55 :NELPVKG 1wmhB 67 :DLLPLTN T0309 63 :EMAGDPLEHHHHHH 1wmhB 82 :ASGPPPLRLLVQKR Number of specific fragments extracted= 5 number of extra gaps= 0 total=315 Number of alignments=92 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set T0309 4 :KKVHQI 1wmhB 47 :RAVHQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=316 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=316 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)H7 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILS 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLR T0309 41 :EFNGKNVSITVKEE 1wmhB 51 :QIPGLDVLLGYTDA T0309 55 :NELPV 1wmhB 67 :DLLPL Number of specific fragments extracted= 3 number of extra gaps= 0 total=319 Number of alignments=93 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEF 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAV T0309 43 :NGKNVSITVKEE 1wmhB 53 :PGLDVLLGYTDA T0309 55 :NELPV 1wmhB 67 :DLLPL Number of specific fragments extracted= 3 number of extra gaps= 0 total=322 Number of alignments=94 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)H7 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSE 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRA T0309 42 :FNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1wmhB 61 :YTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKR Number of specific fragments extracted= 2 number of extra gaps= 0 total=324 Number of alignments=95 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)H7 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILS 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLR T0309 41 :EFNGKNVSITVKE 1wmhB 51 :QIPGLDVLLGYTD T0309 54 :ENELPV 1wmhB 66 :GDLLPL T0309 60 :KGVEMAGDPLEHHHHHH 1wmhB 79 :RALASGPPPLRLLVQKR Number of specific fragments extracted= 4 number of extra gaps= 0 total=328 Number of alignments=96 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)K5 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSE 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRA T0309 42 :FNGKNVSITVKEE 1wmhB 52 :IPGLDVLLGYTDA T0309 55 :NELPVKGVE 1wmhB 67 :DLLPLTNDD T0309 64 :MAGDPLE 1wmhB 81 :LASGPPP T0309 71 :HHHHHH 1wmhB 90 :LLVQKR Number of specific fragments extracted= 5 number of extra gaps= 0 total=333 Number of alignments=97 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)K5 because first residue in template chain is (1wmhB)S14 T0309 6 :V 1wmhB 15 :I T0309 9 :INVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEF 1wmhB 16 :VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAV T0309 43 :NGKNVSITVKEE 1wmhB 53 :PGLDVLLGYTDA T0309 55 :NELPVKG 1wmhB 67 :DLLPLTN T0309 63 :EMAGDPLEHHHHHH 1wmhB 82 :ASGPPPLRLLVQKR Number of specific fragments extracted= 5 number of extra gaps= 0 total=338 Number of alignments=98 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set T0309 4 :KKVHQI 1wmhB 47 :RAVHQI Number of specific fragments extracted= 1 number of extra gaps= 0 total=339 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=339 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set Warning: unaligning (T0309)H7 because first residue in template chain is (1wmhB)S14 T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSE 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRA T0309 42 :FNGKNVSITVKEE 1wmhB 52 :IPGLDVLLGYTDA T0309 55 :NELPV 1wmhB 67 :DLLPL Number of specific fragments extracted= 3 number of extra gaps= 0 total=342 Number of alignments=99 # 1wmhB read from 1wmhB/merged-a2m # found chain 1wmhB in training set T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEF 1wmhB 15 :IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAV T0309 43 :NGKNVSITVKEE 1wmhB 53 :PGLDVLLGYTDA T0309 55 :NELPV 1wmhB 67 :DLLPL Number of specific fragments extracted= 3 number of extra gaps= 0 total=345 Number of alignments=100 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fvtA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 2fvtA/merged-a2m # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAE 2fvtA 37 :FLPDAVWGWDVTKPEQIDRYSLQRVFDNAN T0309 31 :YTYDFKEILSEFNGKNVSITVKEENE 2fvtA 79 :VWIAPRQLREALRGVNVVLDTMQTGP T0309 57 :LPVK 2fvtA 124 :IAVP T0309 69 :LEHHHHHH 2fvtA 128 :LEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=349 Number of alignments=101 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MASKKVHQINV 2fvtA 3 :QRSEIPHFPRT T0309 12 :KGFFDMDVMEVTE 2fvtA 40 :DAVWGWDVTKPEQ T0309 30 :EYTYDFK 2fvtA 53 :IDRYSLQ T0309 37 :EILSEFNGKNVSITVK 2fvtA 85 :QLREALRGVNVVLDTM T0309 53 :EENELPVKGVE 2fvtA 108 :TYNIMIGERRR T0309 64 :MAGDPLEHHHHHH 2fvtA 123 :LIAVPLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=355 Number of alignments=102 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 5 :KVHQINVKGFFDMDVMEVTEQTKEAEYTYDF 2fvtA 81 :IAPRQLREALRGVNVVLDTMQTGPAIRTYNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=356 Number of alignments=103 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 11 :VKGFFDMDVMEVTEQTKEAEYTYDF 2fvtA 87 :REALRGVNVVLDTMQTGPAIRTYNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=357 Number of alignments=104 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAE 2fvtA 37 :FLPDAVWGWDVTKPEQIDRYSLQRVFDNAN T0309 31 :YTYDFKEILSEFNGKNVSIT 2fvtA 79 :VWIAPRQLREALRGVNVVLD T0309 51 :VKEENELPVKGVEMAG 2fvtA 106 :IRTYNIMIGERRRVAA T0309 67 :DPLEHHHHHH 2fvtA 126 :VPLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=361 Number of alignments=105 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAE 2fvtA 37 :FLPDAVWGWDVTKPEQIDRYSLQRVFDNAN T0309 31 :YTYDFKEILSEFNGKNVSITVKE 2fvtA 79 :VWIAPRQLREALRGVNVVLDTMQ T0309 54 :ENELPVKGVEMA 2fvtA 109 :YNIMIGERRRVA T0309 66 :GDPLEHHHHHH 2fvtA 125 :AVPLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=365 Number of alignments=106 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 5 :KVHQINVKGFFDMDVMEVTEQTKEAEYTYDF 2fvtA 81 :IAPRQLREALRGVNVVLDTMQTGPAIRTYNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=366 Number of alignments=107 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 15 :FDMDVMEVTEQTKEAEYTY 2fvtA 91 :RGVNVVLDTMQTGPAIRTY Number of specific fragments extracted= 1 number of extra gaps= 0 total=367 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKE 2fvtA 10 :FPRTAAIDAYGKGGFYFAGMSHQGSLLFLPDAVWGWD T0309 38 :ILSEFNGKNVSITVKEENEL 2fvtA 49 :KPEQIDRYSLQRVFDNANAI T0309 58 :PVKGVEMAGDPLEHHHHHH 2fvtA 117 :RRVAAALIAVPLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=370 Number of alignments=108 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MA 2fvtA 3 :QR T0309 3 :SKKVHQINVKGFFDMDVMEVTEQT 2fvtA 12 :RTAAIDAYGKGGFYFAGMSHQGSL T0309 27 :KEAEYTYDF 2fvtA 39 :PDAVWGWDV T0309 37 :EILSEFNGKNVSITVKEENELPV 2fvtA 48 :TKPEQIDRYSLQRVFDNANAIDT T0309 60 :K 2fvtA 115 :E T0309 61 :GVEMAGDPLEHHHHHH 2fvtA 120 :AAALIAVPLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=376 Number of alignments=109 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 11 :VKGFFDMDVMEVTEQTKEAEYTYDF 2fvtA 87 :REALRGVNVVLDTMQTGPAIRTYNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=377 Number of alignments=110 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=377 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 68 :PLEHHHHHH 2fvtA 127 :PLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=378 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 62 :VEMAGDPLEHHHHHH 2fvtA 121 :AALIAVPLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=379 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MASK 2fvtA 1 :MAQR T0309 5 :KVHQINVKG 2fvtA 12 :RTAAIDAYG T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEILSEFN 2fvtA 37 :FLPDAVWGWDVTKPEQIDRYSLQRVFDNAN T0309 44 :GKNVSITVKEENE 2fvtA 76 :GADVWIAPRQLRE T0309 58 :PVKGVEMAGD 2fvtA 89 :ALRGVNVVLD T0309 68 :PLEHHHHHH 2fvtA 127 :PLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=385 Number of alignments=111 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MASKK 2fvtA 1 :MAQRS T0309 6 :VHQINVKGFF 2fvtA 16 :IDAYGKGGFY T0309 16 :DMD 2fvtA 38 :LPD T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFN 2fvtA 42 :VWGWDVTKPEQIDRYSLQRVFDNAN T0309 44 :GKNVSITVKEENE 2fvtA 76 :GADVWIAPRQLRE T0309 58 :PVKGVEMAGD 2fvtA 89 :ALRGVNVVLD T0309 68 :PLEHHHHHH 2fvtA 127 :PLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=392 Number of alignments=112 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MASKK 2fvtA 1 :MAQRS T0309 8 :QINVKGFFDMDVM 2fvtA 17 :DAYGKGGFYFAGM T0309 21 :EVTEQTKE 2fvtA 46 :DVTKPEQI T0309 29 :AEYTYDFKEILSEFNGKNVSITVKE 2fvtA 77 :ADVWIAPRQLREALRGVNVVLDTMQ T0309 56 :ELP 2fvtA 116 :RRR T0309 62 :VE 2fvtA 119 :VA T0309 66 :GDPLEHHHHHH 2fvtA 125 :AVPLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=399 Number of alignments=113 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MA 2fvtA 1 :MA T0309 3 :SKKVHQINVKG 2fvtA 13 :TAAIDAYGKGG T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEILSEFN 2fvtA 37 :FLPDAVWGWDVTKPEQIDRYSLQRVFDNAN T0309 44 :GKNVSITVKE 2fvtA 92 :GVNVVLDTMQ T0309 60 :K 2fvtA 117 :R T0309 61 :GVEMAGDPLEHHHHHH 2fvtA 120 :AAALIAVPLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=405 Number of alignments=114 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 68 :PLEHHHHHH 2fvtA 127 :PLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=406 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 61 :GVEMAGDPLEHHHHHH 2fvtA 120 :AAALIAVPLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=407 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 66 :GDPLEHHHHHH 2fvtA 125 :AVPLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=408 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 34 :DFKEILSE 2fvtA 108 :TYNIMIGE T0309 44 :GKNVSITVKE 2fvtA 116 :RRRVAAALIA T0309 67 :DPLEHHHHHH 2fvtA 126 :VPLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=411 Number of alignments=115 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MASK 2fvtA 1 :MAQR T0309 5 :KVHQINVKG 2fvtA 12 :RTAAIDAYG T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEILSEFN 2fvtA 37 :FLPDAVWGWDVTKPEQIDRYSLQRVFDNAN T0309 44 :GKNVSITVKEENE 2fvtA 76 :GADVWIAPRQLRE T0309 58 :PVKGVEMAGD 2fvtA 89 :ALRGVNVVLD T0309 68 :PLEHHHHHH 2fvtA 127 :PLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=417 Number of alignments=116 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MASKK 2fvtA 1 :MAQRS T0309 6 :VHQINVKGFF 2fvtA 16 :IDAYGKGGFY T0309 16 :DMD 2fvtA 38 :LPD T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFN 2fvtA 42 :VWGWDVTKPEQIDRYSLQRVFDNAN T0309 44 :GKNVSITVKEENE 2fvtA 76 :GADVWIAPRQLRE T0309 58 :PVKGVEMAGD 2fvtA 89 :ALRGVNVVLD T0309 68 :PLEHHHHHH 2fvtA 127 :PLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=424 Number of alignments=117 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MASKK 2fvtA 1 :MAQRS T0309 8 :QINVKGFFDMDVM 2fvtA 17 :DAYGKGGFYFAGM T0309 21 :EVTEQTKE 2fvtA 46 :DVTKPEQI T0309 29 :AEYTYDFKEILSEFNGKNVSITVKE 2fvtA 77 :ADVWIAPRQLREALRGVNVVLDTMQ T0309 56 :ELP 2fvtA 116 :RRR T0309 62 :VE 2fvtA 119 :VA T0309 66 :GDPLEHHHHHH 2fvtA 125 :AVPLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=431 Number of alignments=118 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MA 2fvtA 1 :MA T0309 3 :SKKVHQINVKG 2fvtA 13 :TAAIDAYGKGG T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEILSEFN 2fvtA 37 :FLPDAVWGWDVTKPEQIDRYSLQRVFDNAN T0309 44 :GKNVSITVKE 2fvtA 92 :GVNVVLDTMQ T0309 60 :K 2fvtA 117 :R T0309 61 :GVEMAGDPLEHHHHHH 2fvtA 120 :AAALIAVPLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=437 Number of alignments=119 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 68 :PLEHHHHHH 2fvtA 127 :PLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=438 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 61 :GVEMAGDPLEHHHHHH 2fvtA 120 :AAALIAVPLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=439 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 66 :GDPLEHHHHHH 2fvtA 125 :AVPLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=440 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 34 :DFKEILSE 2fvtA 108 :TYNIMIGE T0309 44 :GKNVSITVKE 2fvtA 116 :RRRVAAALIA T0309 67 :DPLEHHHHHH 2fvtA 126 :VPLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=443 Number of alignments=120 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MASK 2fvtA 1 :MAQR T0309 5 :KVHQINVKG 2fvtA 12 :RTAAIDAYG T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEILSEFN 2fvtA 37 :FLPDAVWGWDVTKPEQIDRYSLQRVFDNAN T0309 44 :GKNVSITVKEENE 2fvtA 76 :GADVWIAPRQLRE T0309 58 :PVKGVEMAGD 2fvtA 89 :ALRGVNVVLD T0309 68 :PLEHHHHHH 2fvtA 127 :PLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=449 Number of alignments=121 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MASKK 2fvtA 1 :MAQRS T0309 6 :VHQINVKGFF 2fvtA 16 :IDAYGKGGFY T0309 16 :DMD 2fvtA 38 :LPD T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFN 2fvtA 42 :VWGWDVTKPEQIDRYSLQRVFDNAN T0309 44 :GKNVSITVKEENE 2fvtA 76 :GADVWIAPRQLRE T0309 58 :PVKGVEMAGD 2fvtA 89 :ALRGVNVVLD T0309 68 :PLEHHHHHH 2fvtA 127 :PLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=456 Number of alignments=122 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MASKKVH 2fvtA 1 :MAQRSEI T0309 9 :INVKG 2fvtA 18 :AYGKG T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEILSEFN 2fvtA 37 :FLPDAVWGWDVTKPEQIDRYSLQRVFDNAN T0309 44 :GKNVSITVKE 2fvtA 92 :GVNVVLDTMQ T0309 68 :PLEHHHHHH 2fvtA 127 :PLEHHHHHH Number of specific fragments extracted= 5 number of extra gaps= 0 total=461 Number of alignments=123 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 1 :MA 2fvtA 1 :MA T0309 3 :SKKVHQINVKG 2fvtA 13 :TAAIDAYGKGG T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEILSEFN 2fvtA 37 :FLPDAVWGWDVTKPEQIDRYSLQRVFDNAN T0309 44 :GKNVSITVKE 2fvtA 92 :GVNVVLDTMQ T0309 60 :K 2fvtA 117 :R T0309 61 :GVEMAGDPLEHHHHHH 2fvtA 120 :AAALIAVPLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=467 Number of alignments=124 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 68 :PLEHHHHHH 2fvtA 127 :PLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=468 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 61 :GVEMAGDPLEHHHHHH 2fvtA 120 :AAALIAVPLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=469 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 67 :DPLEHHHHHH 2fvtA 126 :VPLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=470 # 2fvtA read from 2fvtA/merged-a2m # found chain 2fvtA in template set T0309 34 :DFKEILSE 2fvtA 108 :TYNIMIGE T0309 44 :GKNVSITVKE 2fvtA 116 :RRRVAAALIA T0309 67 :DPLEHHHHHH 2fvtA 126 :VPLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=473 Number of alignments=125 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1m93A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1m93A/merged-a2m # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set Warning: unaligning (T0309)M17 because first residue in template chain is (1m93A)M1 T0309 18 :DV 1m93A 2 :DI T0309 35 :FKEILSEFNGKNVSIT 1m93A 4 :FREIASSMKGENVFIS T0309 51 :VKEENELPVKGVEMAGDPLEHHHHHH 1m93A 21 :PSISSVLTILYYGANGSTAEQLSKYV Number of specific fragments extracted= 3 number of extra gaps= 0 total=476 Number of alignments=126 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set Warning: unaligning (T0309)M17 because first residue in template chain is (1m93A)M1 T0309 18 :DV 1m93A 2 :DI T0309 35 :FKEILSEFNGKNVSITVK 1m93A 4 :FREIASSMKGENVFISPP T0309 53 :EENELPVKGVEMAGDPLEHHHHHH 1m93A 23 :ISSVLTILYYGANGSTAEQLSKYV Number of specific fragments extracted= 3 number of extra gaps= 0 total=479 Number of alignments=127 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSIT 1m93A 4 :FREIASSMKGENVFIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=480 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSIT 1m93A 4 :FREIASSMKGENVFIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=481 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 1 :MAS 1m93A 1 :MDI T0309 35 :FKEILSEFNGKNVSIT 1m93A 4 :FREIASSMKGENVFIS T0309 51 :VKEENELPVKGVEMAGDPLEHHHHHH 1m93A 21 :PSISSVLTILYYGANGSTAEQLSKYV Number of specific fragments extracted= 3 number of extra gaps= 0 total=484 Number of alignments=128 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 1 :M 1m93A 1 :M T0309 35 :FKEILSEFNGKNVSITVK 1m93A 4 :FREIASSMKGENVFISPP T0309 53 :EENELPVKGVEMAGDPLEHHHHHH 1m93A 23 :ISSVLTILYYGANGSTAEQLSKYV Number of specific fragments extracted= 3 number of extra gaps= 0 total=487 Number of alignments=129 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSIT 1m93A 4 :FREIASSMKGENVFIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=488 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSIT 1m93A 4 :FREIASSMKGENVFIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=489 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set Warning: unaligning (T0309)L39 because last residue in template chain is (1m93A)V46 T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEI 1m93A 8 :ASSMKGENVFISPPSISSVLTILYYGANGSTAEQLSKY Number of specific fragments extracted= 1 number of extra gaps= 0 total=490 Number of alignments=130 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 1 :MA 1m93A 1 :MD T0309 3 :SKKVHQINVKG 1m93A 4 :FREIASSMKGE T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEILS 1m93A 18 :ISPPSISSVLTILYYGANGSTAEQLSK Number of specific fragments extracted= 3 number of extra gaps= 0 total=493 Number of alignments=131 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNV 1m93A 4 :FREIASSMKGENV Number of specific fragments extracted= 1 number of extra gaps= 0 total=494 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVS 1m93A 4 :FREIASSMKGENVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=495 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSIT 1m93A 4 :FREIASSMKGENVFIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=496 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSITV 1m93A 4 :FREIASSMKGENVFISP Number of specific fragments extracted= 1 number of extra gaps= 0 total=497 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 1 :MAS 1m93A 1 :MDI T0309 35 :FKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1m93A 4 :FREIASSMKGENVFISPPSISSVLTILYYGANGSTAEQLSKY Number of specific fragments extracted= 2 number of extra gaps= 0 total=499 Number of alignments=132 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 1 :MA 1m93A 1 :MD T0309 34 :DFKEILSEFNGKNVSITVKEENE 1m93A 3 :IFREIASSMKGENVFISPPSISS T0309 57 :LPVKGVEMAGDPLEHHHH 1m93A 27 :LTILYYGANGSTAEQLSK Number of specific fragments extracted= 3 number of extra gaps= 0 total=502 Number of alignments=133 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set Warning: unaligning (T0309)V62 because last residue in template chain is (1m93A)V46 T0309 1 :MA 1m93A 1 :MD T0309 34 :DFKEILSEFNGKNVSIT 1m93A 3 :IFREIASSMKGENVFIS T0309 60 :KG 1m93A 44 :KY Number of specific fragments extracted= 3 number of extra gaps= 0 total=505 Number of alignments=134 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set Warning: unaligning (T0309)V62 because last residue in template chain is (1m93A)V46 T0309 1 :MA 1m93A 1 :MD T0309 34 :DFKEILSEFNGKNVSIT 1m93A 3 :IFREIASSMKGENVFIS T0309 60 :KG 1m93A 44 :KY Number of specific fragments extracted= 3 number of extra gaps= 0 total=508 Number of alignments=135 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSIT 1m93A 4 :FREIASSMKGENVFIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=509 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSITV 1m93A 4 :FREIASSMKGENVFISP Number of specific fragments extracted= 1 number of extra gaps= 0 total=510 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSI 1m93A 4 :FREIASSMKGENVFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=511 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSI 1m93A 4 :FREIASSMKGENVFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=512 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 1 :MAS 1m93A 1 :MDI T0309 35 :FKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1m93A 4 :FREIASSMKGENVFISPPSISSVLTILYYGANGSTAEQLSKY Number of specific fragments extracted= 2 number of extra gaps= 0 total=514 Number of alignments=136 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 1 :MA 1m93A 1 :MD T0309 34 :DFKEILSEFNGKNVSITVKEENE 1m93A 3 :IFREIASSMKGENVFISPPSISS T0309 57 :LPVKGVEMAGDPLEHHHH 1m93A 27 :LTILYYGANGSTAEQLSK Number of specific fragments extracted= 3 number of extra gaps= 0 total=517 Number of alignments=137 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set Warning: unaligning (T0309)V62 because last residue in template chain is (1m93A)V46 T0309 1 :MA 1m93A 1 :MD T0309 34 :DFKEILSEFNGKNVSIT 1m93A 3 :IFREIASSMKGENVFIS T0309 60 :KG 1m93A 44 :KY Number of specific fragments extracted= 3 number of extra gaps= 0 total=520 Number of alignments=138 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set Warning: unaligning (T0309)V62 because last residue in template chain is (1m93A)V46 T0309 1 :MA 1m93A 1 :MD T0309 34 :DFKEILSEFNGKNVSIT 1m93A 3 :IFREIASSMKGENVFIS T0309 60 :KG 1m93A 44 :KY Number of specific fragments extracted= 3 number of extra gaps= 0 total=523 Number of alignments=139 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSIT 1m93A 4 :FREIASSMKGENVFIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=524 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSITV 1m93A 4 :FREIASSMKGENVFISP Number of specific fragments extracted= 1 number of extra gaps= 0 total=525 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSI 1m93A 4 :FREIASSMKGENVFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=526 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSI 1m93A 4 :FREIASSMKGENVFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=527 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 1 :MAS 1m93A 1 :MDI T0309 35 :FKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1m93A 4 :FREIASSMKGENVFISPPSISSVLTILYYGANGSTAEQLSKY Number of specific fragments extracted= 2 number of extra gaps= 0 total=529 Number of alignments=140 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 1 :MA 1m93A 1 :MD T0309 34 :DFKEILSEFNGKNVSITVKEENE 1m93A 3 :IFREIASSMKGENVFISPPSISS T0309 57 :LPVKGVEMAGDPLEHHHH 1m93A 27 :LTILYYGANGSTAEQLSK Number of specific fragments extracted= 3 number of extra gaps= 0 total=532 Number of alignments=141 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 1 :MA 1m93A 1 :MD T0309 34 :DFKEILSEFNGKNVSIT 1m93A 3 :IFREIASSMKGENVFIS T0309 63 :EMAGDPLEHHHHH 1m93A 33 :GANGSTAEQLSKY Number of specific fragments extracted= 3 number of extra gaps= 0 total=535 Number of alignments=142 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set Warning: unaligning (T0309)V62 because last residue in template chain is (1m93A)V46 T0309 1 :MA 1m93A 1 :MD T0309 34 :DFKEILSEFNGKNVSIT 1m93A 3 :IFREIASSMKGENVFIS T0309 60 :KG 1m93A 44 :KY Number of specific fragments extracted= 3 number of extra gaps= 0 total=538 Number of alignments=143 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSIT 1m93A 4 :FREIASSMKGENVFIS Number of specific fragments extracted= 1 number of extra gaps= 0 total=539 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSITV 1m93A 4 :FREIASSMKGENVFISP Number of specific fragments extracted= 1 number of extra gaps= 0 total=540 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSI 1m93A 4 :FREIASSMKGENVFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=541 # 1m93A read from 1m93A/merged-a2m # found chain 1m93A in training set T0309 35 :FKEILSEFNGKNVSI 1m93A 4 :FREIASSMKGENVFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=542 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dyqA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1dyqA/merged-a2m # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 1 :MASKKVHQINVKGFF 1dyqA 16 :SELQGTALGNLKQIY T0309 16 :DMDVMEVTEQT 1dyqA 32 :YNEKAKTENKE T0309 27 :KEAEYTYDFKEILSEFNGKNVSITVKEENEL 1dyqA 65 :NDLLVRFDSKDIVDKYKGKKVDLYGAYAGYQ T0309 58 :PVKGVEMAGDPLEHHHHHH 1dyqA 101 :PNKTACMYGGVTLHDNNRL Number of specific fragments extracted= 4 number of extra gaps= 0 total=546 Number of alignments=144 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 2 :ASKKVHQINVKGFF 1dyqA 17 :ELQGTALGNLKQIY T0309 16 :DMDVMEVTEQTKE 1dyqA 32 :YNEKAKTENKESH T0309 29 :AEYTYDFKEILSEFNGKNVSITVKE 1dyqA 67 :LLVRFDSKDIVDKYKGKKVDLYGAY T0309 54 :ENEL 1dyqA 116 :NNRL T0309 58 :PVKGVEMA 1dyqA 130 :WLDGKQNT T0309 66 :GDPLEHH 1dyqA 207 :NTLLRIY T0309 73 :HH 1dyqA 223 :NM T0309 75 :HH 1dyqA 232 :TS Number of specific fragments extracted= 8 number of extra gaps= 0 total=554 Number of alignments=145 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 36 :KEILSEFNGKNVSI 1dyqA 74 :KDIVDKYKGKKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=555 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 32 :TYDFKEILSEFNGKNVSITV 1dyqA 70 :RFDSKDIVDKYKGKKVDLYG Number of specific fragments extracted= 1 number of extra gaps= 0 total=556 Number of alignments=146 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 1 :MASKKVHQINVKGFF 1dyqA 16 :SELQGTALGNLKQIY T0309 16 :DMDVMEVTEQT 1dyqA 32 :YNEKAKTENKE T0309 27 :KEAEYTYDFKEILSEFNGKNVSITVKE 1dyqA 65 :NDLLVRFDSKDIVDKYKGKKVDLYGAY T0309 54 :ENELPVKGVEMAG 1dyqA 97 :AGGTPNKTACMYG T0309 67 :DPLEHHHHHH 1dyqA 132 :DGKQNTVPLE Number of specific fragments extracted= 5 number of extra gaps= 0 total=561 Number of alignments=147 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 3 :SKKVHQINVKGFF 1dyqA 18 :LQGTALGNLKQIY T0309 16 :DMDVMEVTEQTKEAEY 1dyqA 32 :YNEKAKTENKESHDQF T0309 32 :TYDFKEILSEFNGKNVSI 1dyqA 70 :RFDSKDIVDKYKGKKVDL T0309 50 :TVKEENELP 1dyqA 112 :TLHDNNRLT T0309 59 :V 1dyqA 127 :I T0309 60 :KGV 1dyqA 132 :DGK T0309 63 :EM 1dyqA 197 :DL T0309 65 :AGDPLEHHHH 1dyqA 201 :AQGQYSNTLL T0309 75 :HH 1dyqA 232 :TS Number of specific fragments extracted= 9 number of extra gaps= 0 total=570 Number of alignments=148 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 36 :KEILSEFNGKNVSI 1dyqA 74 :KDIVDKYKGKKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=571 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 36 :KEILSEFNGKNVSI 1dyqA 74 :KDIVDKYKGKKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=572 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKE 1dyqA 38 :TENKESHDQFRQHTILFKGFFTDHSWYN T0309 29 :AEYTYDFKEILSEFNGKNVSITVKE 1dyqA 67 :LLVRFDSKDIVDKYKGKKVDLYGAY T0309 54 :ENELPVKGVEMAGDPLEHHHHHH 1dyqA 115 :DNNRLTEEKKVPINLWLDGKQNT Number of specific fragments extracted= 3 number of extra gaps= 0 total=575 Number of alignments=149 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 1 :MASKKVHQ 1dyqA 7 :INEKDLRK T0309 9 :I 1dyqA 24 :G T0309 10 :NVKGFFDMDVMEVTEQTK 1dyqA 26 :LKQIYYYNEKAKTENKES T0309 28 :E 1dyqA 55 :K T0309 29 :AEYTYDFKEILSEFNGKNVSI 1dyqA 67 :LLVRFDSKDIVDKYKGKKVDL T0309 50 :TVKEENELP 1dyqA 112 :TLHDNNRLT T0309 59 :VKGVEM 1dyqA 131 :LDGKQN T0309 65 :AGDPLEHHHHH 1dyqA 206 :SNTLLRIYRDN Number of specific fragments extracted= 8 number of extra gaps= 0 total=583 Number of alignments=150 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 33 :YDFKEILSEFNGKNVSITVKEEN 1dyqA 170 :YNSDVFDGKVQRGLIVFHTSTEP Number of specific fragments extracted= 1 number of extra gaps= 0 total=584 Number of alignments=151 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=584 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set Warning: unaligning (T0309)H75 because last residue in template chain is (1dyqA)S233 T0309 3 :SK 1dyqA 19 :QG T0309 5 :KVHQINVK 1dyqA 25 :NLKQIYYY T0309 13 :GFFDMDVMEVTEQ 1dyqA 34 :EKAKTENKESHDQ T0309 26 :T 1dyqA 59 :T T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1dyqA 65 :NDLLVRFDSKDIVDKYKGKKVDL T0309 50 :TVKEENELPV 1dyqA 112 :TLHDNNRLTE T0309 60 :KG 1dyqA 128 :NL T0309 62 :VEMAGD 1dyqA 196 :YDLFGA T0309 69 :LEHHHH 1dyqA 226 :IDIYLY Number of specific fragments extracted= 9 number of extra gaps= 0 total=593 Number of alignments=152 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 33 :YDFKEILSEFNGKNVSI 1dyqA 71 :FDSKDIVDKYKGKKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=594 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 33 :YDFKEILSEFNGKNVSI 1dyqA 71 :FDSKDIVDKYKGKKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=595 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 6 :VHQINVKGFFDMDV 1dyqA 49 :QHTILFKGFFTDHS T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSIT 1dyqA 63 :WYNDLLVRFDSKDIVDKYKGKKVDLY Number of specific fragments extracted= 2 number of extra gaps= 0 total=597 Number of alignments=153 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 5 :KVHQINVKGFFDMD 1dyqA 48 :RQHTILFKGFFTDH T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSI 1dyqA 62 :SWYNDLLVRFDSKDIVDKYKGKKVDL T0309 50 :TVKEENELPVKGVEMAGDPLEHHHHHH 1dyqA 93 :GYQCAGGTPNKTACMYGGVTLHDNNRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=600 Number of alignments=154 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 7 :HQINVKGFFDMD 1dyqA 50 :HTILFKGFFTDH T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSIT 1dyqA 62 :SWYNDLLVRFDSKDIVDKYKGKKVDLY T0309 51 :VKEENELPVKGVEMAGDPLEHHHHH 1dyqA 94 :YQCAGGTPNKTACMYGGVTLHDNNR Number of specific fragments extracted= 3 number of extra gaps= 0 total=603 Number of alignments=155 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 7 :HQINVKGFFD 1dyqA 50 :HTILFKGFFT T0309 27 :KEAEYT 1dyqA 60 :DHSWYN T0309 33 :YDFKEILSEFNGKNVSI 1dyqA 71 :FDSKDIVDKYKGKKVDL T0309 50 :TVKEENELPVK 1dyqA 118 :RLTEEKKVPIN T0309 62 :VEMAGD 1dyqA 129 :LWLDGK T0309 68 :PLEHH 1dyqA 139 :PLETV Number of specific fragments extracted= 6 number of extra gaps= 0 total=609 Number of alignments=156 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 7 :HQINVKGFFDMD 1dyqA 50 :HTILFKGFFTDH T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSI 1dyqA 62 :SWYNDLLVRFDSKDIVDKYKGKKVDL T0309 51 :VKEENELPV 1dyqA 119 :LTEEKKVPI T0309 61 :GVEMAGD 1dyqA 128 :NLWLDGK T0309 68 :PLEH 1dyqA 139 :PLET Number of specific fragments extracted= 5 number of extra gaps= 0 total=614 Number of alignments=157 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 33 :YDFKEILSEFNGKNVSI 1dyqA 71 :FDSKDIVDKYKGKKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=615 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 6 :VHQINVKGFFDMDV 1dyqA 49 :QHTILFKGFFTDHS T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSIT 1dyqA 63 :WYNDLLVRFDSKDIVDKYKGKKVDLY Number of specific fragments extracted= 2 number of extra gaps= 0 total=617 Number of alignments=158 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 5 :KVHQINVKGFFDM 1dyqA 48 :RQHTILFKGFFTD T0309 28 :EAEYT 1dyqA 61 :HSWYN T0309 33 :YDFKEILSEFNGKNVSI 1dyqA 71 :FDSKDIVDKYKGKKVDL Number of specific fragments extracted= 3 number of extra gaps= 0 total=620 Number of alignments=159 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 5 :KVHQINVKGFFDMD 1dyqA 48 :RQHTILFKGFFTDH T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSITVKE 1dyqA 62 :SWYNDLLVRFDSKDIVDKYKGKKVDLYGAY Number of specific fragments extracted= 2 number of extra gaps= 0 total=622 Number of alignments=160 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 5 :KVHQINVKGFFDMD 1dyqA 48 :RQHTILFKGFFTDH T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSI 1dyqA 62 :SWYNDLLVRFDSKDIVDKYKGKKVDL T0309 50 :TVKEENELPVKGVEMAGDPLEHHHHHH 1dyqA 93 :GYQCAGGTPNKTACMYGGVTLHDNNRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=625 Number of alignments=161 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 7 :HQINVKGFFDMD 1dyqA 50 :HTILFKGFFTDH T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSIT 1dyqA 62 :SWYNDLLVRFDSKDIVDKYKGKKVDLY T0309 51 :VKEENELPVKGVEMAGDPLEHHHHH 1dyqA 94 :YQCAGGTPNKTACMYGGVTLHDNNR Number of specific fragments extracted= 3 number of extra gaps= 0 total=628 Number of alignments=162 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 7 :HQINVKGFFD 1dyqA 50 :HTILFKGFFT T0309 27 :KEAEYT 1dyqA 60 :DHSWYN T0309 33 :YDFKEILSEFNGKNVSI 1dyqA 71 :FDSKDIVDKYKGKKVDL T0309 50 :TVKEENELPVK 1dyqA 118 :RLTEEKKVPIN T0309 62 :VEMAGD 1dyqA 129 :LWLDGK T0309 68 :PLEHH 1dyqA 139 :PLETV Number of specific fragments extracted= 6 number of extra gaps= 0 total=634 Number of alignments=163 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 7 :HQINVKGFFDMD 1dyqA 50 :HTILFKGFFTDH T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSI 1dyqA 62 :SWYNDLLVRFDSKDIVDKYKGKKVDL T0309 51 :VKEENELPV 1dyqA 119 :LTEEKKVPI T0309 61 :GVEMAGD 1dyqA 128 :NLWLDGK T0309 68 :PLEH 1dyqA 139 :PLET Number of specific fragments extracted= 5 number of extra gaps= 0 total=639 Number of alignments=164 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 33 :YDFKEILSEFNGKNVSI 1dyqA 71 :FDSKDIVDKYKGKKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=640 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 6 :VHQINVKGFFDMDV 1dyqA 49 :QHTILFKGFFTDHS T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSIT 1dyqA 63 :WYNDLLVRFDSKDIVDKYKGKKVDLY Number of specific fragments extracted= 2 number of extra gaps= 0 total=642 Number of alignments=165 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 5 :KVHQINVKGFFDM 1dyqA 48 :RQHTILFKGFFTD T0309 28 :EAEYT 1dyqA 61 :HSWYN T0309 33 :YDFKEILSEFNGKNVSI 1dyqA 71 :FDSKDIVDKYKGKKVDL Number of specific fragments extracted= 3 number of extra gaps= 0 total=645 Number of alignments=166 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 5 :KVHQINVKGFFDMD 1dyqA 48 :RQHTILFKGFFTDH T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSITVKE 1dyqA 62 :SWYNDLLVRFDSKDIVDKYKGKKVDLYGAY Number of specific fragments extracted= 2 number of extra gaps= 0 total=647 Number of alignments=167 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 5 :KVHQINVKGFFDMD 1dyqA 48 :RQHTILFKGFFTDH T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSI 1dyqA 62 :SWYNDLLVRFDSKDIVDKYKGKKVDL T0309 50 :TVKEENELPVKGVEMAGDPLEHHHHHH 1dyqA 93 :GYQCAGGTPNKTACMYGGVTLHDNNRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=650 Number of alignments=168 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 7 :HQINVKGFFDMD 1dyqA 50 :HTILFKGFFTDH T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSIT 1dyqA 62 :SWYNDLLVRFDSKDIVDKYKGKKVDLY T0309 51 :VKEENELPVKGVEMAGDPLEHHHHH 1dyqA 94 :YQCAGGTPNKTACMYGGVTLHDNNR Number of specific fragments extracted= 3 number of extra gaps= 0 total=653 Number of alignments=169 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 7 :HQINVKGFF 1dyqA 50 :HTILFKGFF T0309 26 :TKEAEYT 1dyqA 59 :TDHSWYN T0309 33 :YDFKEILSEFNGKNVSI 1dyqA 71 :FDSKDIVDKYKGKKVDL T0309 50 :TVKEENELPVK 1dyqA 118 :RLTEEKKVPIN T0309 62 :VEMAGD 1dyqA 129 :LWLDGK T0309 68 :PLEH 1dyqA 139 :PLET Number of specific fragments extracted= 6 number of extra gaps= 0 total=659 Number of alignments=170 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 7 :HQINVKGFFDMD 1dyqA 50 :HTILFKGFFTDH T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSI 1dyqA 62 :SWYNDLLVRFDSKDIVDKYKGKKVDL T0309 51 :VKEENELPV 1dyqA 119 :LTEEKKVPI T0309 61 :GVEMAGD 1dyqA 128 :NLWLDGK T0309 68 :PLEH 1dyqA 139 :PLET Number of specific fragments extracted= 5 number of extra gaps= 0 total=664 Number of alignments=171 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 33 :YDFKEILSEFNGKNVSI 1dyqA 71 :FDSKDIVDKYKGKKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=665 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 6 :VHQINVKGFFDMDV 1dyqA 49 :QHTILFKGFFTDHS T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSIT 1dyqA 63 :WYNDLLVRFDSKDIVDKYKGKKVDLY Number of specific fragments extracted= 2 number of extra gaps= 0 total=667 Number of alignments=172 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 5 :KVHQINVKGFFDMD 1dyqA 48 :RQHTILFKGFFTDH T0309 29 :AEYT 1dyqA 62 :SWYN T0309 33 :YDFKEILSEFNGKNVSIT 1dyqA 71 :FDSKDIVDKYKGKKVDLY Number of specific fragments extracted= 3 number of extra gaps= 0 total=670 Number of alignments=173 # 1dyqA read from 1dyqA/merged-a2m # found chain 1dyqA in training set T0309 5 :KVHQINVKGFFDMD 1dyqA 48 :RQHTILFKGFFTDH T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSITVKE 1dyqA 62 :SWYNDLLVRFDSKDIVDKYKGKKVDLYGAY Number of specific fragments extracted= 2 number of extra gaps= 0 total=672 Number of alignments=174 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2snv/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2snv expands to /projects/compbio/data/pdb/2snv.pdb.gz 2snv:Warning: there is no chain 2snv will retry with 2snvA # T0309 read from 2snv/merged-a2m # 2snv read from 2snv/merged-a2m # adding 2snv to template set # found chain 2snv in template set Warning: unaligning (T0309)K5 because first residue in template chain is (2snv)R114 Warning: unaligning (T0309)N10 because of BadResidue code BAD_PEPTIDE in next template residue (2snv)N120 Warning: unaligning (T0309)V11 because of BadResidue code BAD_PEPTIDE at template residue (2snv)N120 Warning: unaligning (T0309)K12 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)D122 Warning: unaligning (T0309)G13 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)D122 Warning: unaligning (T0309)V19 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)M20 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 6 :VHQI 2snv 115 :LFDV T0309 14 :FFDMD 2snv 143 :KGTID T0309 21 :EVTEQTKEAEYTYDFKEILSEFNG 2snv 150 :VLSKLKFTKSSAYDMEFAQLPVNM T0309 45 :KNVSITVK 2snv 194 :GAVQYSGG T0309 55 :NELP 2snv 203 :FTIP T0309 59 :VKGVEMAGDPLEHHH 2snv 209 :VGGRGDSGRPIMDNS Number of specific fragments extracted= 6 number of extra gaps= 2 total=678 Number of alignments=175 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set T0309 17 :MDVMEVT 2snv 162 :YDMEFAQ T0309 28 :EAEYTYD 2snv 170 :PVNMRSE T0309 44 :GKNVSITVK 2snv 193 :HGAVQYSGG Number of specific fragments extracted= 3 number of extra gaps= 0 total=681 Number of alignments=176 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 Warning: unaligning (T0309)K52 because of BadResidue code BAD_PEPTIDE in next template residue (2snv)T238 Warning: unaligning (T0309)E53 because of BadResidue code BAD_PEPTIDE at template residue (2snv)T238 Warning: unaligning (T0309)E63 because of BadResidue code BAD_PEPTIDE in next template residue (2snv)S249 Warning: unaligning (T0309)M64 because of BadResidue code BAD_PEPTIDE at template residue (2snv)S249 Warning: unaligning (T0309)P68 because of BadResidue code BAD_PEPTIDE in next template residue (2snv)I254 Warning: unaligning (T0309)L69 because of BadResidue code BAD_PEPTIDE at template residue (2snv)I254 Warning: unaligning (T0309)H75 because of BadResidue code BAD_PEPTIDE in next template residue (2snv)T261 Warning: unaligning (T0309)H76 because of BadResidue code BAD_PEPTIDE at template residue (2snv)T261 T0309 1 :MASKKVHQINVKGFFD 2snv 132 :MEGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVSITV 2snv 150 :VLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTS T0309 54 :ENELPVKGV 2snv 239 :RTALSVVTW T0309 65 :AGD 2snv 250 :KGK T0309 70 :EHHHH 2snv 255 :KTTPE Number of specific fragments extracted= 5 number of extra gaps= 5 total=686 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 Warning: unaligning (T0309)L69 because of BadResidue code BAD_PEPTIDE at template residue (2snv)I254 Warning: unaligning (T0309)H72 because of BadResidue code BAD_PEPTIDE in next template residue (2snv)T261 Warning: unaligning (T0309)H73 because of BadResidue code BAD_PEPTIDE at template residue (2snv)T261 T0309 1 :MASKKVHQINVKGFFD 2snv 132 :MEGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNG 2snv 150 :VLSKLKFTKSSAYDMEFAQLPVNMRS T0309 45 :KNVSITVKEENELPVKGVEMAGDP 2snv 192 :HHGAVQYSGGRFTIPRGVGGRGDS T0309 70 :E 2snv 255 :K T0309 71 :H 2snv 259 :E T0309 74 :HHH 2snv 262 :EEW Number of specific fragments extracted= 6 number of extra gaps= 3 total=692 Number of alignments=177 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 1 :MASKKVHQINVKGFFD 2snv 132 :MEGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVSIT 2snv 150 :VLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYT Number of specific fragments extracted= 2 number of extra gaps= 1 total=694 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 7 :HQINVKGFFD 2snv 138 :KPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVS 2snv 150 :VLSKLKFTKSSAYDMEFAQLPVNMRSEAFT Number of specific fragments extracted= 2 number of extra gaps= 1 total=696 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 1 :MASKKVHQINVKGFFD 2snv 132 :MEGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEI 2snv 150 :VLSKLKFTKSSAYDMEFAQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=698 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 2 :ASKKVHQINVKGFFD 2snv 133 :EGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFN 2snv 150 :VLSKLKFTKSSAYDMEFAQLPVNMR Number of specific fragments extracted= 2 number of extra gaps= 1 total=700 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 1 :MASKKVHQINVKGFFD 2snv 132 :MEGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVK 2snv 150 :VLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSE T0309 67 :DPLEHHHHHH 2snv 184 :HPEGFYNWHH Number of specific fragments extracted= 3 number of extra gaps= 1 total=703 Number of alignments=178 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 1 :MASKKVHQINVKGFFD 2snv 132 :MEGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENEL 2snv 150 :VLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGF T0309 58 :PVKGVEMAG 2snv 192 :HHGAVQYSG Number of specific fragments extracted= 3 number of extra gaps= 1 total=706 Number of alignments=179 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)A2 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)D122 Warning: unaligning (T0309)S3 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)D122 Warning: unaligning (T0309)K4 because of BadResidue code BAD_PEPTIDE at template residue (2snv)G123 Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 1 :M 2snv 114 :R T0309 5 :KVH 2snv 124 :DVI T0309 8 :QINVKGFFD 2snv 139 :PLHVKGTID T0309 19 :VMEVTEQTKEAEYTY 2snv 150 :VLSKLKFTKSSAYDM T0309 53 :EENELPVK 2snv 165 :EFAQLPVN T0309 64 :MAGDPLEHHHHHH 2snv 173 :MRSEAFTYTSEHP Number of specific fragments extracted= 6 number of extra gaps= 2 total=712 Number of alignments=180 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)A2 because of BadResidue code BAD_PEPTIDE at template residue (2snv)G123 T0309 1 :M 2snv 114 :R T0309 3 :SKKVHQINVKGFF 2snv 124 :DVIGHALAMEGKV T0309 16 :DMDVMEVTEQTKEAEYTYD 2snv 163 :DMEFAQLPVNMRSEAFTYT T0309 42 :FNGKNVSIT 2snv 191 :WHHGAVQYS T0309 55 :NE 2snv 200 :GG T0309 57 :LP 2snv 205 :IP T0309 60 :KGVEMAGDPLE 2snv 207 :RGVGGRGDSGR Number of specific fragments extracted= 7 number of extra gaps= 1 total=719 Number of alignments=181 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 1 :MASKKVHQINVKGFFD 2snv 132 :MEGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEI 2snv 150 :VLSKLKFTKSSAYDMEFAQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=721 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 2 :ASKKVHQINVKGFFD 2snv 133 :EGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGK 2snv 150 :VLSKLKFTKSSAYDMEFAQLPVNMRSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=723 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 11 :VKGFFD 2snv 142 :VKGTID T0309 19 :VMEVTEQTKEAEYTY 2snv 150 :VLSKLKFTKSSAYDM T0309 53 :EENELPVK 2snv 165 :EFAQLPVN T0309 64 :MAGDPLEH 2snv 173 :MRSEAFTY Number of specific fragments extracted= 4 number of extra gaps= 1 total=727 Number of alignments=182 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)V6 because of BadResidue code BAD_PEPTIDE in next template residue (2snv)V227 Warning: unaligning (T0309)H7 because of BadResidue code BAD_PEPTIDE at template residue (2snv)V227 Warning: unaligning (T0309)T23 because of BadResidue code BAD_PEPTIDE in next template residue (2snv)S249 Warning: unaligning (T0309)E24 because of BadResidue code BAD_PEPTIDE at template residue (2snv)S249 Warning: unaligning (T0309)E28 because of BadResidue code BAD_PEPTIDE in next template residue (2snv)I254 Warning: unaligning (T0309)A29 because of BadResidue code BAD_PEPTIDE at template residue (2snv)I254 T0309 2 :ASKK 2snv 222 :NSGR T0309 8 :QINVKG 2snv 228 :AIVLGG T0309 14 :FFDMDVMEV 2snv 239 :RTALSVVTW T0309 25 :QTK 2snv 250 :KGK T0309 30 :EYT 2snv 255 :KTT Number of specific fragments extracted= 5 number of extra gaps= 3 total=732 Number of alignments=183 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 1 :MASKKVHQINVKGFFD 2snv 132 :MEGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVK 2snv 150 :VLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSE T0309 67 :DPLEHHHHHH 2snv 184 :HPEGFYNWHH Number of specific fragments extracted= 3 number of extra gaps= 1 total=735 Number of alignments=184 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 1 :MASKKVHQINVKGFFD 2snv 132 :MEGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENEL 2snv 150 :VLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGF T0309 58 :PVKGVEMAG 2snv 192 :HHGAVQYSG Number of specific fragments extracted= 3 number of extra gaps= 1 total=738 Number of alignments=185 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)A2 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)D122 Warning: unaligning (T0309)S3 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)D122 Warning: unaligning (T0309)K4 because of BadResidue code BAD_PEPTIDE at template residue (2snv)G123 Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 1 :M 2snv 114 :R T0309 5 :KVH 2snv 124 :DVI T0309 8 :QINVKGFFD 2snv 139 :PLHVKGTID T0309 19 :VMEVTEQTKEAEYTY 2snv 150 :VLSKLKFTKSSAYDM T0309 53 :EENELPVK 2snv 165 :EFAQLPVN T0309 64 :MAGDPLEHHHHHH 2snv 173 :MRSEAFTYTSEHP Number of specific fragments extracted= 6 number of extra gaps= 2 total=744 Number of alignments=186 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)A2 because of BadResidue code BAD_PEPTIDE at template residue (2snv)G123 T0309 1 :M 2snv 114 :R T0309 3 :SKKVHQINVKGFF 2snv 124 :DVIGHALAMEGKV T0309 16 :DMDVMEVTEQTKEAEYTYD 2snv 163 :DMEFAQLPVNMRSEAFTYT T0309 42 :FNGKNVSIT 2snv 191 :WHHGAVQYS T0309 55 :NE 2snv 200 :GG T0309 57 :LP 2snv 205 :IP T0309 60 :KGVEMAGDPLE 2snv 207 :RGVGGRGDSGR Number of specific fragments extracted= 7 number of extra gaps= 1 total=751 Number of alignments=187 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 1 :MASKKVHQINVKGFFD 2snv 132 :MEGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEI 2snv 150 :VLSKLKFTKSSAYDMEFAQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=753 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 2 :ASKKVHQINVKGFFD 2snv 133 :EGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGK 2snv 150 :VLSKLKFTKSSAYDMEFAQLPVNMRSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=755 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 11 :VKGFFD 2snv 142 :VKGTID T0309 19 :VMEVTEQTKEAEYTY 2snv 150 :VLSKLKFTKSSAYDM T0309 53 :EENELPVK 2snv 165 :EFAQLPVN T0309 64 :MAGDPLEH 2snv 173 :MRSEAFTY Number of specific fragments extracted= 4 number of extra gaps= 1 total=759 Number of alignments=188 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)V6 because of BadResidue code BAD_PEPTIDE in next template residue (2snv)V227 Warning: unaligning (T0309)H7 because of BadResidue code BAD_PEPTIDE at template residue (2snv)V227 Warning: unaligning (T0309)T23 because of BadResidue code BAD_PEPTIDE in next template residue (2snv)S249 Warning: unaligning (T0309)E24 because of BadResidue code BAD_PEPTIDE at template residue (2snv)S249 Warning: unaligning (T0309)E28 because of BadResidue code BAD_PEPTIDE in next template residue (2snv)I254 Warning: unaligning (T0309)A29 because of BadResidue code BAD_PEPTIDE at template residue (2snv)I254 T0309 2 :ASKK 2snv 222 :NSGR T0309 8 :QINVKG 2snv 228 :AIVLGG T0309 14 :FFDMDVMEV 2snv 239 :RTALSVVTW T0309 25 :QTK 2snv 250 :KGK T0309 30 :EYT 2snv 255 :KTT Number of specific fragments extracted= 5 number of extra gaps= 3 total=764 Number of alignments=189 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 1 :MASKKVHQINVKGFFD 2snv 132 :MEGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVK 2snv 150 :VLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSE T0309 67 :DPLEHHHHHH 2snv 184 :HPEGFYNWHH Number of specific fragments extracted= 3 number of extra gaps= 1 total=767 Number of alignments=190 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 1 :MASKKVHQINVKGFFD 2snv 132 :MEGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENEL 2snv 150 :VLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGF T0309 58 :PVKGVEMAG 2snv 192 :HHGAVQYSG Number of specific fragments extracted= 3 number of extra gaps= 1 total=770 Number of alignments=191 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)A2 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)D122 Warning: unaligning (T0309)S3 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)D122 Warning: unaligning (T0309)K4 because of BadResidue code BAD_PEPTIDE at template residue (2snv)G123 Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 1 :M 2snv 114 :R T0309 5 :KVH 2snv 124 :DVI T0309 8 :QINVKGFFD 2snv 139 :PLHVKGTID T0309 19 :VMEVTEQTKEAEYTYD 2snv 150 :VLSKLKFTKSSAYDME T0309 54 :ENELPVK 2snv 166 :FAQLPVN T0309 64 :MAGDPLEHHHHHH 2snv 173 :MRSEAFTYTSEHP Number of specific fragments extracted= 6 number of extra gaps= 2 total=776 Number of alignments=192 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)A2 because of BadResidue code BAD_PEPTIDE at template residue (2snv)G123 T0309 1 :M 2snv 114 :R T0309 3 :SKKVHQINVKGFF 2snv 124 :DVIGHALAMEGKV T0309 16 :DMDVMEVTEQTKEAEYTYD 2snv 163 :DMEFAQLPVNMRSEAFTYT T0309 42 :FNGKNVSIT 2snv 191 :WHHGAVQYS T0309 55 :NE 2snv 200 :GG T0309 57 :LP 2snv 205 :IP T0309 60 :KGVEMAGDPLE 2snv 207 :RGVGGRGDSGR Number of specific fragments extracted= 7 number of extra gaps= 1 total=783 Number of alignments=193 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 1 :MASKKVHQINVKGFFD 2snv 132 :MEGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEI 2snv 150 :VLSKLKFTKSSAYDMEFAQL Number of specific fragments extracted= 2 number of extra gaps= 1 total=785 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 2 :ASKKVHQINVKGFFD 2snv 133 :EGKVMKPLHVKGTID T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGK 2snv 150 :VLSKLKFTKSSAYDMEFAQLPVNMRSE Number of specific fragments extracted= 2 number of extra gaps= 1 total=787 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2snv)P149 Warning: unaligning (T0309)D18 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2snv)P149 T0309 11 :VKGFFD 2snv 142 :VKGTID T0309 19 :VMEVTEQTKEAEYT 2snv 150 :VLSKLKFTKSSAYD Number of specific fragments extracted= 2 number of extra gaps= 1 total=789 # 2snv read from 2snv/merged-a2m # found chain 2snv in template set Warning: unaligning (T0309)V6 because of BadResidue code BAD_PEPTIDE in next template residue (2snv)V227 Warning: unaligning (T0309)H7 because of BadResidue code BAD_PEPTIDE at template residue (2snv)V227 Warning: unaligning (T0309)T23 because of BadResidue code BAD_PEPTIDE in next template residue (2snv)S249 Warning: unaligning (T0309)E24 because of BadResidue code BAD_PEPTIDE at template residue (2snv)S249 Warning: unaligning (T0309)E28 because of BadResidue code BAD_PEPTIDE in next template residue (2snv)I254 Warning: unaligning (T0309)A29 because of BadResidue code BAD_PEPTIDE at template residue (2snv)I254 T0309 2 :ASKK 2snv 222 :NSGR T0309 8 :QINVKG 2snv 228 :AIVLGG T0309 14 :FFDMDVMEV 2snv 239 :RTALSVVTW T0309 25 :QTK 2snv 250 :KGK T0309 30 :EYT 2snv 255 :KTT Number of specific fragments extracted= 5 number of extra gaps= 3 total=794 Number of alignments=194 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2rslA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2rslA expands to /projects/compbio/data/pdb/2rsl.pdb.gz 2rslA:Skipped atom 455, because occupancy 0.27 <= existing 0.730 in 2rslA Skipped atom 457, because occupancy 0.270 <= existing 0.730 in 2rslA Skipped atom 459, because occupancy 0.270 <= existing 0.730 in 2rslA Skipped atom 461, because occupancy 0.270 <= existing 0.730 in 2rslA # T0309 read from 2rslA/merged-a2m # 2rslA read from 2rslA/merged-a2m # adding 2rslA to template set # found chain 2rslA in template set T0309 1 :MA 2rslA 1 :MR T0309 3 :SKKVHQINVKGFFD 2rslA 12 :SQQSLDIQVRALKD T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 2rslA 58 :GDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD T0309 55 :NELPVKGVEMAGDPLEHHHHH 2rslA 101 :GEMGKMVVTILSAVAQAERQR Number of specific fragments extracted= 4 number of extra gaps= 0 total=798 Number of alignments=195 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFID Number of specific fragments extracted= 1 number of extra gaps= 0 total=799 Number of alignments=196 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2rslA)R45 Warning: unaligning (T0309)H74 because last residue in template chain is (2rslA)I122 T0309 1 :M 2rslA 1 :M T0309 2 :ASKKVHQINVKGFFD 2rslA 22 :ALKDAGVKANRIFTD T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELP 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGIST T0309 59 :VKGVEMAGDPLEHHH 2rslA 107 :VVTILSAVAQAERQR Number of specific fragments extracted= 4 number of extra gaps= 0 total=803 Number of alignments=197 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set Warning: unaligning (T0309)H74 because last residue in template chain is (2rslA)I122 T0309 1 :MA 2rslA 1 :MR T0309 3 :SKKV 2rslA 23 :LKDA T0309 8 :QINV 2rslA 27 :GVKA T0309 12 :KGF 2rslA 32 :RIF T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENEL 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGIS T0309 58 :PVKGVEMAGDPLEHHH 2rslA 106 :MVVTILSAVAQAERQR Number of specific fragments extracted= 6 number of extra gaps= 0 total=809 Number of alignments=198 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=810 Number of alignments=199 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENE 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=811 Number of alignments=200 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set Warning: unaligning (T0309)H74 because last residue in template chain is (2rslA)I122 T0309 1 :M 2rslA 1 :M T0309 2 :ASKKVHQINVKG 2rslA 47 :GLDLLRMKVEEG T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG T0309 56 :ELPVKGVEMAGDPLEHHH 2rslA 104 :GKMVVTILSAVAQAERQR Number of specific fragments extracted= 4 number of extra gaps= 0 total=815 Number of alignments=201 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set Warning: unaligning (T0309)H74 because last residue in template chain is (2rslA)I122 T0309 1 :M 2rslA 1 :M T0309 4 :KKV 2rslA 24 :KDA T0309 8 :QIN 2rslA 27 :GVK T0309 11 :VKGF 2rslA 31 :NRIF T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENE 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGI T0309 58 :PVKGVEMAGDPLEHHH 2rslA 106 :MVVTILSAVAQAERQR Number of specific fragments extracted= 6 number of extra gaps= 0 total=821 Number of alignments=202 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=822 Number of alignments=203 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENE 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=823 Number of alignments=204 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2rslA)R45 T0309 1 :MASKKVHQINVKGFFD 2rslA 21 :RALKDAGVKANRIFTD T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENE 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGI T0309 60 :KGVEMAGDPLEHHHHHH 2rslA 98 :STDGEMGKMVVTILSAV Number of specific fragments extracted= 3 number of extra gaps= 0 total=826 Number of alignments=205 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 1 :MAS 2rslA 1 :MRL T0309 4 :KKVHQINVKGFFD 2rslA 24 :KDAGVKANRIFTD T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENE 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGI T0309 61 :GVEMAGDPLEHHHHHH 2rslA 99 :TDGEMGKMVVTILSAV Number of specific fragments extracted= 4 number of extra gaps= 0 total=830 Number of alignments=206 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=831 Number of alignments=207 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENE 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=832 Number of alignments=208 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=833 Number of alignments=209 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 2rslA 58 :GDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=834 Number of alignments=210 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set Warning: unaligning (T0309)K36 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2rslA)R45 Warning: unaligning (T0309)G44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2rslA)R45 T0309 1 :MASKKVHQINV 2rslA 1 :MRLFGYARVST T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDF 2rslA 13 :QQSLDIQVRALKDAGVKANRIFTD T0309 45 :KNVSI 2rslA 46 :KGLDL T0309 50 :TVKEENELPVKGVEMAGDPLEHHHHHH 2rslA 54 :KVEEGDVILVKKLDRLGRDTADMIQLI Number of specific fragments extracted= 4 number of extra gaps= 0 total=838 Number of alignments=211 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 1 :M 2rslA 1 :M T0309 3 :SKKVHQINVKGFFD 2rslA 12 :SQQSLDIQVRALKD T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENE 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGI Number of specific fragments extracted= 3 number of extra gaps= 0 total=841 Number of alignments=212 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set Warning: unaligning (T0309)N10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2rslA)R45 T0309 1 :M 2rslA 1 :M T0309 2 :ASKKVHQI 2rslA 29 :KANRIFTD T0309 15 :FDMDVMEVTEQ 2rslA 48 :LDLLRMKVEEG T0309 26 :TKEAEYTYDFKEILSEFNGKNVSITVKE 2rslA 67 :DRLGRDTADMIQLIKEFDAQGVSIRFID T0309 60 :KGVEMAGDPL 2rslA 95 :DGISTDGEMG Number of specific fragments extracted= 5 number of extra gaps= 0 total=846 Number of alignments=213 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set Warning: unaligning (T0309)N10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2rslA)R45 T0309 1 :M 2rslA 1 :M T0309 2 :ASKKVHQI 2rslA 29 :KANRIFTD T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFID T0309 60 :KGVEMAGD 2rslA 95 :DGISTDGE Number of specific fragments extracted= 4 number of extra gaps= 0 total=850 Number of alignments=214 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=851 Number of alignments=215 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 2rslA 58 :GDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=852 Number of alignments=216 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 31 :YTYDFKEILSEFNGKNVSITVK 2rslA 72 :DTADMIQLIKEFDAQGVSIRFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=853 Number of alignments=217 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 31 :YTYDFKEILSEFNGKNVSITV 2rslA 72 :DTADMIQLIKEFDAQGVSIRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=854 Number of alignments=218 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set Warning: unaligning (T0309)K36 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2rslA)R45 Warning: unaligning (T0309)G44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2rslA)R45 T0309 1 :MASKKVHQINV 2rslA 1 :MRLFGYARVST T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDF 2rslA 13 :QQSLDIQVRALKDAGVKANRIFTD T0309 45 :KNVSI 2rslA 46 :KGLDL T0309 50 :TVKEENELPVKGVEMAGDPLEHHHHHH 2rslA 54 :KVEEGDVILVKKLDRLGRDTADMIQLI Number of specific fragments extracted= 4 number of extra gaps= 0 total=858 Number of alignments=219 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 1 :M 2rslA 1 :M T0309 3 :SKKVHQINVKGFFD 2rslA 12 :SQQSLDIQVRALKD T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENE 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGI Number of specific fragments extracted= 3 number of extra gaps= 0 total=861 Number of alignments=220 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set Warning: unaligning (T0309)N10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2rslA)R45 T0309 1 :M 2rslA 1 :M T0309 2 :ASKKVHQI 2rslA 29 :KANRIFTD T0309 15 :FDMDVMEVTEQ 2rslA 48 :LDLLRMKVEEG T0309 26 :TKEAEYTYDFKEILSEFNGKNVSITVKE 2rslA 67 :DRLGRDTADMIQLIKEFDAQGVSIRFID T0309 60 :KGVEMAGDPL 2rslA 95 :DGISTDGEMG Number of specific fragments extracted= 5 number of extra gaps= 0 total=866 Number of alignments=221 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set Warning: unaligning (T0309)N10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2rslA)R45 T0309 1 :M 2rslA 1 :M T0309 2 :ASKKVHQI 2rslA 29 :KANRIFTD T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFID T0309 60 :KGVEMAGD 2rslA 95 :DGISTDGE Number of specific fragments extracted= 4 number of extra gaps= 0 total=870 Number of alignments=222 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=871 Number of alignments=223 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 2rslA 58 :GDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=872 Number of alignments=224 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 31 :YTYDFKEILSEFNGKNVSITVK 2rslA 72 :DTADMIQLIKEFDAQGVSIRFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=873 Number of alignments=225 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 31 :YTYDFKEILSEFNGKNVSITV 2rslA 72 :DTADMIQLIKEFDAQGVSIRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=874 Number of alignments=226 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set Warning: unaligning (T0309)K36 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2rslA)R45 Warning: unaligning (T0309)G44 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2rslA)R45 T0309 1 :MASKKVHQINV 2rslA 1 :MRLFGYARVST T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDF 2rslA 13 :QQSLDIQVRALKDAGVKANRIFTD T0309 45 :KNVSI 2rslA 46 :KGLDL T0309 50 :TVKEENELPVKGVEMAGDPLEHHHHHH 2rslA 54 :KVEEGDVILVKKLDRLGRDTADMIQLI Number of specific fragments extracted= 4 number of extra gaps= 0 total=878 Number of alignments=227 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 1 :M 2rslA 1 :M T0309 3 :SKKVHQINVKGFFD 2rslA 12 :SQQSLDIQVRALKD T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENE 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGI Number of specific fragments extracted= 3 number of extra gaps= 0 total=881 Number of alignments=228 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 1 :M 2rslA 1 :M T0309 3 :SKKVHQINVK 2rslA 27 :GVKANRIFTD T0309 16 :DMDVMEVTEQ 2rslA 49 :DLLRMKVEEG T0309 26 :TKEAEYTYDFKEILSEFNGKNVSITVKE 2rslA 67 :DRLGRDTADMIQLIKEFDAQGVSIRFID T0309 60 :KGVEMAGDP 2rslA 95 :DGISTDGEM Number of specific fragments extracted= 5 number of extra gaps= 0 total=886 Number of alignments=229 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set Warning: unaligning (T0309)N10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2rslA)R45 T0309 1 :M 2rslA 1 :M T0309 2 :ASKKVHQI 2rslA 29 :KANRIFTD T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFID T0309 60 :KGVEMAG 2rslA 95 :DGISTDG Number of specific fragments extracted= 4 number of extra gaps= 0 total=890 Number of alignments=230 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 2rslA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=891 Number of alignments=231 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 2rslA 58 :GDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=892 Number of alignments=232 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 29 :AEYTYDFKEILSEFNGKNVSITVKE 2rslA 70 :GRDTADMIQLIKEFDAQGVSIRFID Number of specific fragments extracted= 1 number of extra gaps= 0 total=893 Number of alignments=233 # 2rslA read from 2rslA/merged-a2m # found chain 2rslA in template set T0309 31 :YTYDFKEILSEFNGKNVSITV 2rslA 72 :DTADMIQLIKEFDAQGVSIRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=894 Number of alignments=234 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bdqA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 2bdqA/merged-a2m # 2bdqA read from 2bdqA/merged-a2m # found chain 2bdqA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=894 # 2bdqA read from 2bdqA/merged-a2m # found chain 2bdqA in template set Warning: unaligning (T0309)V62 because last residue in template chain is (2bdqA)T210 Number of specific fragments extracted= 0 number of extra gaps= 0 total=894 # 2bdqA read from 2bdqA/merged-a2m # found chain 2bdqA in template set T0309 1 :MASKKVHQINVKGFFDMDV 2bdqA 1 :MILREFCAENLTDLTRLDK T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGV 2bdqA 55 :ISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGI Number of specific fragments extracted= 2 number of extra gaps= 0 total=896 Number of alignments=235 # 2bdqA read from 2bdqA/merged-a2m # found chain 2bdqA in template set T0309 1 :MASKKVHQINV 2bdqA 1 :MILREFCAENL T0309 15 :FDMDVMEVTEQTKEA 2bdqA 78 :MEEDILRAVELESDA T0309 32 :TYDFKEIL 2bdqA 144 :ALGFTRIL T0309 40 :SEFNGKNVSITVKE 2bdqA 154 :GSSNGEPIIENIKH T0309 54 :EN 2bdqA 175 :AN T0309 56 :ELPVKG 2bdqA 180 :EIMVGG Number of specific fragments extracted= 6 number of extra gaps= 0 total=902 Number of alignments=236 # 2bdqA read from 2bdqA/merged-a2m # found chain 2bdqA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=902 # 2bdqA read from 2bdqA/merged-a2m # found chain 2bdqA in template set Warning: unaligning (T0309)V62 because last residue in template chain is (2bdqA)T210 Number of specific fragments extracted= 0 number of extra gaps= 0 total=902 # 2bdqA read from 2bdqA/merged-a2m # found chain 2bdqA in template set T0309 1 :MASKKVHQINVKGFFDMDV 2bdqA 1 :MILREFCAENLTDLTRLDK T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGV 2bdqA 55 :ISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGI Number of specific fragments extracted= 2 number of extra gaps= 0 total=904 Number of alignments=237 # 2bdqA read from 2bdqA/merged-a2m # found chain 2bdqA in template set T0309 1 :MASKKVHQINV 2bdqA 1 :MILREFCAENL T0309 15 :FDMDVMEVTEQTKEA 2bdqA 78 :MEEDILRAVELESDA T0309 32 :TYDFKEIL 2bdqA 144 :ALGFTRIL T0309 40 :SEFNGKNVSITVKE 2bdqA 154 :GSSNGEPIIENIKH T0309 54 :EN 2bdqA 175 :AN T0309 56 :ELPVKG 2bdqA 180 :EIMVGG Number of specific fragments extracted= 6 number of extra gaps= 0 total=910 Number of alignments=238 # 2bdqA read from 2bdqA/merged-a2m # found chain 2bdqA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=910 # 2bdqA read from 2bdqA/merged-a2m # found chain 2bdqA in template set Warning: unaligning (T0309)V62 because last residue in template chain is (2bdqA)T210 Number of specific fragments extracted= 0 number of extra gaps= 0 total=910 # 2bdqA read from 2bdqA/merged-a2m # found chain 2bdqA in template set T0309 1 :MASKKVHQINVKGFFDMDV 2bdqA 1 :MILREFCAENLTDLTRLDK T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGV 2bdqA 55 :ISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGI Number of specific fragments extracted= 2 number of extra gaps= 0 total=912 Number of alignments=239 # 2bdqA read from 2bdqA/merged-a2m # found chain 2bdqA in template set T0309 1 :MASKKVHQINV 2bdqA 1 :MILREFCAENL T0309 15 :FDMDVMEVTEQTKEA 2bdqA 78 :MEEDILRAVELESDA T0309 32 :TYDFKEIL 2bdqA 144 :ALGFTRIL T0309 40 :SEFNGKNVSITVKE 2bdqA 154 :GSSNGEPIIENIKH T0309 54 :EN 2bdqA 175 :AN T0309 56 :ELPVKG 2bdqA 180 :EIMVGG Number of specific fragments extracted= 6 number of extra gaps= 0 total=918 Number of alignments=240 # 2bdqA read from 2bdqA/merged-a2m # found chain 2bdqA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=918 # 2bdqA read from 2bdqA/merged-a2m # found chain 2bdqA in template set Warning: unaligning (T0309)V62 because last residue in template chain is (2bdqA)T210 Number of specific fragments extracted= 0 number of extra gaps= 0 total=918 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2a2pA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 2a2pA/merged-a2m # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKKVHQINVKGFFDMDV 2a2pA 24 :MTNYRPDWNRLRGLARGRV T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 2a2pA 87 :RNYQELERIPLSQMTRDEINALVQELGFYRKSAPEAQVPPE T0309 61 :GVEMAGDPLEHHHHHH 2a2pA 137 :EEASEHDDLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=921 Number of alignments=241 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKKVHQI 2a2pA 24 :MTNYRPDWN T0309 10 :NVKGFFDMDVM 2a2pA 55 :EVKAFVTEDIQ T0309 21 :E 2a2pA 73 :K T0309 22 :VTEQTKEAE 2a2pA 85 :LSRNYQELE T0309 31 :YTYDFKEILSEFNGKNVSITVKEENELPVKG 2a2pA 98 :SQMTRDEINALVQELGFYRKSAPEAQVPPEY T0309 62 :VEMAGDPLEHHHHHH 2a2pA 138 :EASEHDDLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=927 Number of alignments=242 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 66 :GDPLEHHHHHH 2a2pA 142 :HDDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=928 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=928 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVT 2a2pA 24 :MTNYRPDWNRLRGLARGRVETCG T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGV 2a2pA 91 :ELERIPLSQMTRDEINALVQELGFYRKSAPEAQVPPEYL T0309 63 :EMAGDPLEHHHHHH 2a2pA 139 :ASEHDDLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=931 Number of alignments=243 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVT 2a2pA 24 :MTNYRPDWNRLRGLARGRVETCG T0309 24 :EQTKEAE 2a2pA 87 :RNYQELE T0309 31 :YTYDFKEILSEFNGKNVSITVKEENELPVKGV 2a2pA 98 :SQMTRDEINALVQELGFYRKSAPEAQVPPEYL T0309 63 :EMAGDPLEHHHHHH 2a2pA 139 :ASEHDDLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=935 Number of alignments=244 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKKVHQINVKGF 2a2pA 87 :RNYQELERIPLSQM Number of specific fragments extracted= 1 number of extra gaps= 0 total=936 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=936 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEV 2a2pA 24 :MTNYRPDWNRLRGLARGRVETC T0309 23 :TEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPL 2a2pA 90 :QELERIPLSQMTRDEINALVQELGFYRKSAPEAQVPPEYLWAPAKPP T0309 70 :EHHHHHH 2a2pA 146 :EHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=939 Number of alignments=245 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQT 2a2pA 24 :MTNYRPDWNRLRGLARGRVETCGGCQ T0309 27 :KEAEY 2a2pA 90 :QELER T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVKGVE 2a2pA 99 :QMTRDEINALVQELGFYRKSAPEAQVPPEYLW T0309 64 :MAGDPLEHHHHHH 2a2pA 140 :SEHDDLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=943 Number of alignments=246 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 66 :GDPLEHHHHHH 2a2pA 142 :HDDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=944 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=944 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=945 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 66 :GDPLEHHHHHH 2a2pA 142 :HDDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=946 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKKVHQINVKGF 2a2pA 24 :MTNYRPDWNRLRGL T0309 15 :FDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMA 2a2pA 48 :CQLNRLKEVKAFVTEDIQLYHNLVMKHLPGADPELVLLSRNYQELERIPLS T0309 66 :GDPLEHHHHHH 2a2pA 142 :HDDLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=949 Number of alignments=247 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKKVHQINVKGFFDMDV 2a2pA 24 :MTNYRPDWNRLRGLARGRV T0309 20 :ME 2a2pA 54 :KE T0309 22 :VTEQTK 2a2pA 60 :VTEDIQ T0309 28 :E 2a2pA 73 :K T0309 29 :AE 2a2pA 78 :AD T0309 31 :YTYDFKEI 2a2pA 85 :LSRNYQEL T0309 39 :LSEFNGKNVSITVKE 2a2pA 97 :LSQMTRDEINALVQE T0309 54 :ENEL 2a2pA 121 :EAQV T0309 58 :PVKGVEMA 2a2pA 132 :PAKPPEEA T0309 66 :GDPLEHHHHHH 2a2pA 142 :HDDLEHHHHHH Number of specific fragments extracted= 10 number of extra gaps= 0 total=959 Number of alignments=248 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKK 2a2pA 24 :MTNYR T0309 7 :HQINVKGFF 2a2pA 68 :HNLVMKHLP T0309 16 :DMDVMEVTEQTKEAEYTY 2a2pA 79 :DPELVLLSRNYQELERIP T0309 34 :DFKEILSEFN 2a2pA 104 :EINALVQELG T0309 44 :GKN 2a2pA 121 :EAQ T0309 50 :TVKEENELPVKGVEMAG 2a2pA 124 :VPPEYLWAPAKPPEEAS T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=966 Number of alignments=249 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKK 2a2pA 24 :MTNYR T0309 6 :VHQINVKG 2a2pA 39 :RGRVETCG T0309 16 :DMDVMEVTEQTKEAEYT 2a2pA 79 :DPELVLLSRNYQELERI T0309 34 :DFKEILSEFNGKNVS 2a2pA 104 :EINALVQELGFYRKS T0309 52 :KEENELPVKGVEMAG 2a2pA 119 :APEAQVPPEYLWAPA T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=972 Number of alignments=250 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=973 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 66 :GDPLEHHHHHH 2a2pA 142 :HDDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=974 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 23 :TEQTKE 2a2pA 120 :PEAQVP T0309 52 :KEENELPVKGVEMAG 2a2pA 126 :PEYLWAPAKPPEEAS T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=977 Number of alignments=251 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 15 :FDMDVMEVTEQTKEAEYT 2a2pA 78 :ADPELVLLSRNYQELERI T0309 34 :DFKEILSEFNGKNVS 2a2pA 104 :EINALVQELGFYRKS T0309 52 :KEENELPVKGVEMAG 2a2pA 119 :APEAQVPPEYLWAPA T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=981 Number of alignments=252 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKKVHQINVKGF 2a2pA 24 :MTNYRPDWNRLRGL T0309 15 :FDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMA 2a2pA 48 :CQLNRLKEVKAFVTEDIQLYHNLVMKHLPGADPELVLLSRNYQELERIPLS T0309 66 :GDPLEHHHHHH 2a2pA 142 :HDDLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=984 Number of alignments=253 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKKVHQINVKGFFDMDV 2a2pA 24 :MTNYRPDWNRLRGLARGRV T0309 20 :ME 2a2pA 54 :KE T0309 22 :VTEQTK 2a2pA 60 :VTEDIQ T0309 28 :E 2a2pA 73 :K T0309 29 :AE 2a2pA 78 :AD T0309 31 :YTYDFKEI 2a2pA 85 :LSRNYQEL T0309 39 :LSEFNGKNVSITVKE 2a2pA 97 :LSQMTRDEINALVQE T0309 54 :ENEL 2a2pA 121 :EAQV T0309 58 :PVKGVEMA 2a2pA 132 :PAKPPEEA T0309 66 :GDPLEHHHHHH 2a2pA 142 :HDDLEHHHHHH Number of specific fragments extracted= 10 number of extra gaps= 0 total=994 Number of alignments=254 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKK 2a2pA 24 :MTNYR T0309 7 :HQINVKGFF 2a2pA 68 :HNLVMKHLP T0309 16 :DMDVMEVTEQTKEAEYTY 2a2pA 79 :DPELVLLSRNYQELERIP T0309 34 :DFKEILSEFN 2a2pA 104 :EINALVQELG T0309 44 :GKN 2a2pA 121 :EAQ T0309 50 :TVKEENELPVKGVEMAG 2a2pA 124 :VPPEYLWAPAKPPEEAS T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=1001 Number of alignments=255 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKK 2a2pA 24 :MTNYR T0309 6 :VHQINVKG 2a2pA 39 :RGRVETCG T0309 16 :DMDVMEVTEQTKEAEYT 2a2pA 79 :DPELVLLSRNYQELERI T0309 34 :DFKEILSEFNGKNVS 2a2pA 104 :EINALVQELGFYRKS T0309 52 :KEENELPVKGVEMAG 2a2pA 119 :APEAQVPPEYLWAPA T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=1007 Number of alignments=256 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1008 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 66 :GDPLEHHHHHH 2a2pA 142 :HDDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1009 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 23 :TEQTKE 2a2pA 120 :PEAQVP T0309 52 :KEENELPVKGVEMAG 2a2pA 126 :PEYLWAPAKPPEEAS T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=1012 Number of alignments=257 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 15 :FDMDVMEVTEQTKEAEYT 2a2pA 78 :ADPELVLLSRNYQELERI T0309 34 :DFKEILSEFNGKNVS 2a2pA 104 :EINALVQELGFYRKS T0309 52 :KEENELPVKGVEMAG 2a2pA 119 :APEAQVPPEYLWAPA T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=1016 Number of alignments=258 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKKVHQINVKGF 2a2pA 24 :MTNYRPDWNRLRGL T0309 15 :FDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMA 2a2pA 48 :CQLNRLKEVKAFVTEDIQLYHNLVMKHLPGADPELVLLSRNYQELERIPLS T0309 66 :GDPLEHHHHHH 2a2pA 142 :HDDLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=1019 Number of alignments=259 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKKVHQINVKGFFDMDV 2a2pA 24 :MTNYRPDWNRLRGLARGRV T0309 20 :ME 2a2pA 54 :KE T0309 22 :VTEQTK 2a2pA 60 :VTEDIQ T0309 28 :E 2a2pA 73 :K T0309 29 :AE 2a2pA 78 :AD T0309 31 :YTYDFKEI 2a2pA 85 :LSRNYQEL T0309 39 :LSEFNGKNVSITVKE 2a2pA 97 :LSQMTRDEINALVQE T0309 54 :ENEL 2a2pA 121 :EAQV T0309 58 :PVKGVEMA 2a2pA 132 :PAKPPEEA T0309 66 :GDPLEHHHHHH 2a2pA 142 :HDDLEHHHHHH Number of specific fragments extracted= 10 number of extra gaps= 0 total=1029 Number of alignments=260 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKKVH 2a2pA 24 :MTNYRPD T0309 8 :QINVKGF 2a2pA 69 :NLVMKHL T0309 15 :FDMDVMEVTEQTKEAEYTY 2a2pA 78 :ADPELVLLSRNYQELERIP T0309 34 :DFKEILSEFNGKNVS 2a2pA 104 :EINALVQELGFYRKS T0309 50 :TV 2a2pA 123 :QV T0309 52 :KEENELPVKGVEMAG 2a2pA 126 :PEYLWAPAKPPEEAS T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=1036 Number of alignments=261 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 1 :MASKK 2a2pA 24 :MTNYR T0309 6 :VHQINVKG 2a2pA 39 :RGRVETCG T0309 16 :DMDVMEVTEQTKEAEYT 2a2pA 79 :DPELVLLSRNYQELERI T0309 34 :DFKEILSEFNGKNVS 2a2pA 104 :EINALVQELGFYRKS T0309 52 :KEENELPVKGVEMAG 2a2pA 119 :APEAQVPPEYLWAPA T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=1042 Number of alignments=262 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1043 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 66 :GDPLEHHHHHH 2a2pA 142 :HDDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1044 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 16 :DMDVMEVTEQTKEAEYTY 2a2pA 79 :DPELVLLSRNYQELERIP T0309 34 :DFKEILSEFNGKNVS 2a2pA 104 :EINALVQELGFYRKS T0309 50 :TV 2a2pA 123 :QV T0309 52 :KEENELPVKGVEMAG 2a2pA 126 :PEYLWAPAKPPEEAS T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 5 number of extra gaps= 0 total=1049 Number of alignments=263 # 2a2pA read from 2a2pA/merged-a2m # found chain 2a2pA in template set T0309 15 :FDMDVMEVTEQTKEAEYT 2a2pA 78 :ADPELVLLSRNYQELERI T0309 34 :DFKEILSEFNGKNVS 2a2pA 104 :EINALVQELGFYRKS T0309 52 :KEENELPVKGVEMAG 2a2pA 119 :APEAQVPPEYLWAPA T0309 67 :DPLEHHHHHH 2a2pA 143 :DDLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=1053 Number of alignments=264 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tzaA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1tzaA/merged-a2m # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1tzaA)A3 T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYT 1tzaA 4 :LDNSIRVEVKTEYIEQQSSPEDEKYLFSYT T0309 33 :YDFKEILSEFNGKNVSITVKEENELPVKGVEMAGD 1tzaA 37 :INLGEQAAKLETRHWIITDANGKTSEVQGAGVVGE T0309 68 :PLEHHHHHH 1tzaA 118 :RLATPGLLH Number of specific fragments extracted= 3 number of extra gaps= 0 total=1056 Number of alignments=265 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1tzaA)A3 T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFK 1tzaA 4 :LDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITII T0309 37 :EILSEFNGKNVSITVKEENELPVKGVEMAGD 1tzaA 41 :EQAAKLETRHWIITDANGKTSEVQGAGVVGE T0309 68 :PLEHHHHHH 1tzaA 118 :RLATPGLLH Number of specific fragments extracted= 3 number of extra gaps= 0 total=1059 Number of alignments=266 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 33 :YDFKEILSEFNGKNV 1tzaA 54 :TDANGKTSEVQGAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=1060 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1060 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 1 :MASKKV 1tzaA 3 :ALDNSI T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYT 1tzaA 9 :RVEVKTEYIEQQSSPEDEKYLFSYT T0309 33 :YDFKEILSEFNGKNVSITVKEENELPVKGVEMAGD 1tzaA 37 :INLGEQAAKLETRHWIITDANGKTSEVQGAGVVGE T0309 68 :PLEHHHHHH 1tzaA 126 :HLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=1064 Number of alignments=267 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 1 :MASKKV 1tzaA 3 :ALDNSI T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFK 1tzaA 9 :RVEVKTEYIEQQSSPEDEKYLFSYTITII T0309 37 :EILSEFNGKNVSITVKEENELPVKGVEMAGD 1tzaA 41 :EQAAKLETRHWIITDANGKTSEVQGAGVVGE T0309 68 :PLEHHHHHH 1tzaA 126 :HLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=1068 Number of alignments=268 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 33 :YDFKEILSEFNGKNV 1tzaA 54 :TDANGKTSEVQGAGV Number of specific fragments extracted= 1 number of extra gaps= 0 total=1069 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1069 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 69 :LEHHHHHH 1tzaA 127 :LEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1070 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 68 :PLEHHHHHH 1tzaA 126 :HLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1071 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1tzaA)A3 T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYT 1tzaA 4 :LDNSIRVEVKTEYIEQQSSPEDEKYLFSYT T0309 33 :YDFKEILSEFNGKNVSITVKEENELPVKGVEMAGD 1tzaA 37 :INLGEQAAKLETRHWIITDANGKTSEVQGAGVVGE T0309 68 :PLEHHHHHH 1tzaA 126 :HLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=1074 Number of alignments=269 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1tzaA)A3 T0309 4 :KK 1tzaA 4 :LD T0309 6 :VHQINVKG 1tzaA 7 :SIRVEVKT T0309 14 :F 1tzaA 29 :L T0309 15 :FDMDVMEVTEQTKEAEYT 1tzaA 32 :YTITIINLGEQAAKLETR T0309 36 :KEILSEFNGKNVSI 1tzaA 50 :HWIITDANGKTSEV T0309 50 :TVKEENELP 1tzaA 68 :VVGETPTIP T0309 59 :VKGVEMAGD 1tzaA 114 :IKPFRLATP T0309 68 :PLEHHHHHH 1tzaA 126 :HLEHHHHHH Number of specific fragments extracted= 8 number of extra gaps= 0 total=1082 Number of alignments=270 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1tzaA)A3 T0309 4 :KK 1tzaA 4 :LD T0309 6 :VHQINVK 1tzaA 7 :SIRVEVK T0309 17 :MDVMEVTEQTKEAEYTY 1tzaA 14 :TEYIEQQSSPEDEKYLF T0309 41 :EFNGKNVSI 1tzaA 55 :DANGKTSEV T0309 52 :KEENELPVKGVEM 1tzaA 107 :GEHFNAIIKPFRL T0309 65 :AGDPLEHHHHHH 1tzaA 123 :GLLHLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=1088 Number of alignments=271 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1tzaA)A3 T0309 4 :K 1tzaA 4 :L T0309 5 :KV 1tzaA 13 :KT T0309 7 :HQINVKGFFDM 1tzaA 32 :YTITIINLGEQ T0309 18 :DVM 1tzaA 45 :KLE T0309 21 :EVTEQ 1tzaA 62 :EVQGA T0309 26 :TKEAEYTYD 1tzaA 76 :PPNTAYQYT T0309 43 :NGKNVSITVKE 1tzaA 106 :SGEHFNAIIKP T0309 55 :NELPVKGV 1tzaA 117 :FRLATPGL T0309 67 :DPLEHHHHHH 1tzaA 125 :LHLEHHHHHH Number of specific fragments extracted= 9 number of extra gaps= 0 total=1097 Number of alignments=272 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 69 :LEHHHHHH 1tzaA 127 :LEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1098 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 68 :PLEHHHHHH 1tzaA 126 :HLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1099 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 42 :FNGKNVSITVKE 1tzaA 105 :ESGEHFNAIIKP T0309 55 :NELPVKG 1tzaA 117 :FRLATPG T0309 66 :GDPLEHHHHHH 1tzaA 124 :LLHLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=1102 Number of alignments=273 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVT 1tzaA 77 :PNTAYQYTSGTVLDTPFGIMY T0309 29 :AEYT 1tzaA 98 :GTYG T0309 43 :NGKNVSITVKE 1tzaA 106 :SGEHFNAIIKP T0309 55 :NELPVKGV 1tzaA 117 :FRLATPGL T0309 67 :DPLEHHHHHH 1tzaA 125 :LHLEHHHHHH Number of specific fragments extracted= 5 number of extra gaps= 0 total=1107 Number of alignments=274 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1tzaA)A3 T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYT 1tzaA 4 :LDNSIRVEVKTEYIEQQSSPEDEKYLFSYT T0309 33 :YDFKEILSEFNGKNVSITVKEENELPVKGVEMAGD 1tzaA 37 :INLGEQAAKLETRHWIITDANGKTSEVQGAGVVGE T0309 68 :PLEHHHHHH 1tzaA 126 :HLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=1110 Number of alignments=275 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1tzaA)A3 T0309 4 :KK 1tzaA 4 :LD T0309 6 :VHQINVKG 1tzaA 7 :SIRVEVKT T0309 14 :F 1tzaA 29 :L T0309 15 :FDMDVMEVTEQTKEAEYT 1tzaA 32 :YTITIINLGEQAAKLETR T0309 36 :KEILSEFNGKNVSI 1tzaA 50 :HWIITDANGKTSEV T0309 50 :TVKEENELP 1tzaA 68 :VVGETPTIP T0309 59 :VKGVEMAGD 1tzaA 114 :IKPFRLATP T0309 68 :PLEHHHHHH 1tzaA 126 :HLEHHHHHH Number of specific fragments extracted= 8 number of extra gaps= 0 total=1118 Number of alignments=276 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1tzaA)A3 T0309 4 :KK 1tzaA 4 :LD T0309 6 :VHQINVK 1tzaA 7 :SIRVEVK T0309 17 :MDVMEVTEQTKEAEYTY 1tzaA 14 :TEYIEQQSSPEDEKYLF T0309 41 :EFNGKNVSI 1tzaA 55 :DANGKTSEV T0309 52 :KEENELPVKGVEM 1tzaA 107 :GEHFNAIIKPFRL T0309 65 :AGDPLEHHHHHH 1tzaA 123 :GLLHLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=1124 Number of alignments=277 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1tzaA)A3 T0309 4 :K 1tzaA 4 :L T0309 5 :KV 1tzaA 13 :KT T0309 7 :HQINVKGFFDM 1tzaA 32 :YTITIINLGEQ T0309 18 :DVM 1tzaA 45 :KLE T0309 21 :EVTEQ 1tzaA 62 :EVQGA T0309 26 :TKEAEYTYD 1tzaA 76 :PPNTAYQYT T0309 43 :NGKNVSITVKE 1tzaA 106 :SGEHFNAIIKP T0309 55 :NELPVKGV 1tzaA 117 :FRLATPGL T0309 67 :DPLEHHHHHH 1tzaA 125 :LHLEHHHHHH Number of specific fragments extracted= 9 number of extra gaps= 0 total=1133 Number of alignments=278 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 69 :LEHHHHHH 1tzaA 127 :LEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1134 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 68 :PLEHHHHHH 1tzaA 126 :HLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1135 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 42 :FNGKNVSITVKE 1tzaA 105 :ESGEHFNAIIKP T0309 55 :NELPVKG 1tzaA 117 :FRLATPG T0309 66 :GDPLEHHHHHH 1tzaA 124 :LLHLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=1138 Number of alignments=279 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVT 1tzaA 77 :PNTAYQYTSGTVLDTPFGIMY T0309 29 :AEYT 1tzaA 98 :GTYG T0309 43 :NGKNVSITVKE 1tzaA 106 :SGEHFNAIIKP T0309 55 :NELPVKGV 1tzaA 117 :FRLATPGL T0309 67 :DPLEHHHHHH 1tzaA 125 :LHLEHHHHHH Number of specific fragments extracted= 5 number of extra gaps= 0 total=1143 Number of alignments=280 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1tzaA)A3 T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYT 1tzaA 4 :LDNSIRVEVKTEYIEQQSSPEDEKYLFSYT T0309 33 :YDFKEILSEFNGKNVSITVKEENELPVKGVEMAGD 1tzaA 37 :INLGEQAAKLETRHWIITDANGKTSEVQGAGVVGE T0309 68 :PLEHHHHHH 1tzaA 126 :HLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=1146 Number of alignments=281 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1tzaA)A3 T0309 4 :KK 1tzaA 4 :LD T0309 6 :VHQINVKG 1tzaA 7 :SIRVEVKT T0309 14 :F 1tzaA 29 :L T0309 15 :FDMDVMEVTEQTKEAEYT 1tzaA 32 :YTITIINLGEQAAKLETR T0309 36 :KEILSEFNGKNVSI 1tzaA 50 :HWIITDANGKTSEV T0309 50 :TVKEENELP 1tzaA 68 :VVGETPTIP T0309 59 :VKGVEMAGD 1tzaA 114 :IKPFRLATP T0309 68 :PLEHHHHHH 1tzaA 126 :HLEHHHHHH Number of specific fragments extracted= 8 number of extra gaps= 0 total=1154 Number of alignments=282 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1tzaA)A3 T0309 4 :KK 1tzaA 4 :LD T0309 6 :VHQINVK 1tzaA 7 :SIRVEVK T0309 17 :MDVMEVTEQTKEAEYTY 1tzaA 14 :TEYIEQQSSPEDEKYLF T0309 38 :ILSEFNGKNVSI 1tzaA 52 :IITDANGKTSEV T0309 52 :KEENELPVKG 1tzaA 107 :GEHFNAIIKP T0309 62 :VEMAGDPLEHHHHHH 1tzaA 120 :ATPGLLHLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=1160 Number of alignments=283 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1tzaA)A3 T0309 4 :K 1tzaA 4 :L T0309 5 :KV 1tzaA 13 :KT T0309 7 :HQINVKGFFDM 1tzaA 32 :YTITIINLGEQ T0309 18 :DVM 1tzaA 45 :KLE T0309 21 :EVTEQ 1tzaA 62 :EVQGA T0309 26 :TKEAEYTYD 1tzaA 76 :PPNTAYQYT T0309 43 :NGKNVSITVKE 1tzaA 106 :SGEHFNAIIKP T0309 55 :NELPVKGV 1tzaA 117 :FRLATPGL T0309 67 :DPLEHHHHHH 1tzaA 125 :LHLEHHHHHH Number of specific fragments extracted= 9 number of extra gaps= 0 total=1169 Number of alignments=284 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 69 :LEHHHHHH 1tzaA 127 :LEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1170 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 68 :PLEHHHHHH 1tzaA 126 :HLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1171 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 4 :KKVHQINVKGFFDMDVMEVT 1tzaA 78 :NTAYQYTSGTVLDTPFGIMY T0309 43 :NGKNVSITVKE 1tzaA 106 :SGEHFNAIIKP T0309 55 :NELPVKGV 1tzaA 117 :FRLATPGL T0309 67 :DPLEHHHHHH 1tzaA 125 :LHLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=1175 Number of alignments=285 # 1tzaA read from 1tzaA/merged-a2m # found chain 1tzaA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVT 1tzaA 77 :PNTAYQYTSGTVLDTPFGIMY T0309 29 :AEYT 1tzaA 98 :GTYG T0309 43 :NGKNVSITVKE 1tzaA 106 :SGEHFNAIIKP T0309 55 :NELPVKGV 1tzaA 117 :FRLATPGL T0309 67 :DPLEHHHHHH 1tzaA 125 :LHLEHHHHHH Number of specific fragments extracted= 5 number of extra gaps= 0 total=1180 Number of alignments=286 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ma3A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1ma3A/merged-a2m # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMA 1ma3A 50 :VASISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRV T0309 66 :GDPLEHHHHHH 1ma3A 166 :GEPLPQRTLFE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1182 Number of alignments=287 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 2 :ASKKVHQINVKGFFDMD 1ma3A 51 :ASISGFKRNPRAFWEFS T0309 19 :VME 1ma3A 95 :KAV T0309 22 :VTEQTKEAEYTYDFKEILSEFNGKNVSI 1ma3A 122 :DKLDCLDCHETYDWSEFVEDFNKGEIPR T0309 50 :TVK 1ma3A 157 :YVK T0309 53 :EEN 1ma3A 198 :PAA T0309 56 :ELPVKGVEMAGDPLEHHHH 1ma3A 208 :KAGAKMIIVNAEPTMADPI T0309 75 :HH 1ma3A 245 :EV Number of specific fragments extracted= 7 number of extra gaps= 0 total=1189 Number of alignments=288 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 23 :TEQTKEAEYTYDFKEILSEFNGKNVSI 1ma3A 123 :KLDCLDCHETYDWSEFVEDFNKGEIPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=1190 Number of alignments=289 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 31 :YTYDFKEILSEFNG 1ma3A 131 :ETYDWSEFVEDFNK Number of specific fragments extracted= 1 number of extra gaps= 0 total=1191 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 1 :MASKKVHQINV 1ma3A 1 :MEDEIRKAAEI T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEILSEF 1ma3A 43 :RKYDPEEVASISGFKRNPRAFWEFSMEMKDK T0309 43 :NG 1ma3A 154 :GS T0309 45 :KNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1ma3A 197 :YPAAELPYIAKKAGAKMIIVNAEPTMADPIFD Number of specific fragments extracted= 4 number of extra gaps= 0 total=1195 Number of alignments=290 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set Warning: unaligning (T0309)H75 because last residue in template chain is (1ma3A)E252 T0309 1 :MASKKVHQIN 1ma3A 1 :MEDEIRKAAE T0309 11 :VKGFFDMDVMEVTEQTKEAEYTYDFKEILSEF 1ma3A 42 :WRKYDPEEVASISGFKRNPRAFWEFSMEMKDK T0309 43 :NGKNVSI 1ma3A 182 :KHCDAFM T0309 50 :TVKE 1ma3A 195 :VVYP T0309 54 :ENELPVKGVEMAGDPLEHH 1ma3A 208 :KAGAKMIIVNAEPTMADPI T0309 73 :HH 1ma3A 250 :RS Number of specific fragments extracted= 6 number of extra gaps= 0 total=1201 Number of alignments=291 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 33 :YDFKEILSEFNGKNVSITVKEENELPVKGVEMAGD 1ma3A 200 :AELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGK Number of specific fragments extracted= 1 number of extra gaps= 0 total=1202 Number of alignments=292 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1202 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 1 :MA 1ma3A 41 :LW T0309 3 :SKKVHQINVKGFFDMDVMEVT 1ma3A 52 :SISGFKRNPRAFWEFSMEMKD T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1ma3A 124 :LDCLDCHETYDWSEFVEDFNKGEIPRCRKCGS T0309 56 :ELPVKGVEMAGDPLEHHHHHH 1ma3A 208 :KAGAKMIIVNAEPTMADPIFD Number of specific fragments extracted= 4 number of extra gaps= 0 total=1206 Number of alignments=293 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set Warning: unaligning (T0309)G13 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ma3A)G40 T0309 1 :MA 1ma3A 1 :ME T0309 3 :SKKVHQI 1ma3A 15 :SKHAVVF T0309 14 :FF 1ma3A 41 :LW T0309 16 :DMDVME 1ma3A 52 :SISGFK T0309 22 :VTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1ma3A 122 :DKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGS T0309 56 :ELPVKGVEMAGDPLEHHHHHH 1ma3A 208 :KAGAKMIIVNAEPTMADPIFD Number of specific fragments extracted= 6 number of extra gaps= 0 total=1212 Number of alignments=294 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 34 :DFKEILSEFNGKNVSITVKEENELPVKG 1ma3A 164 :LFGEPLPQRTLFEAIEEAKHCDAFMVVG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1213 Number of alignments=295 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=1213 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPL 1ma3A 132 :TYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1214 Number of alignments=296 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 28 :EAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEH 1ma3A 128 :DCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=1215 Number of alignments=297 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ma3A)G40 Warning: unaligning (T0309)E28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ma3A)G40 T0309 1 :MA 1ma3A 1 :ME T0309 3 :SKKVHQINVKGFFD 1ma3A 15 :SKHAVVFTGAGISA T0309 29 :AEYTYDFKEILS 1ma3A 41 :LWRKYDPEEVAS T0309 42 :FNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1ma3A 53 :ISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAE Number of specific fragments extracted= 4 number of extra gaps= 0 total=1219 Number of alignments=298 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 1 :MASK 1ma3A 1 :MEDE T0309 5 :KVHQI 1ma3A 15 :SKHAV T0309 10 :NVKGFFDMD 1ma3A 59 :NPRAFWEFS T0309 38 :ILSEFNGKNVSI 1ma3A 74 :LFAEPNPAHYAI Number of specific fragments extracted= 4 number of extra gaps= 0 total=1223 Number of alignments=299 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 1 :M 1ma3A 1 :M T0309 3 :SKK 1ma3A 42 :WRK T0309 11 :VKGF 1ma3A 94 :VKAV T0309 17 :MDVMEVTE 1ma3A 121 :MDKLDCLD T0309 29 :AEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHH 1ma3A 129 :CHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRT Number of specific fragments extracted= 5 number of extra gaps= 0 total=1228 Number of alignments=300 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ma3A)G40 Warning: unaligning (T0309)E28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ma3A)G40 T0309 1 :M 1ma3A 1 :M T0309 3 :SKKVHQINVKGFFD 1ma3A 15 :SKHAVVFTGAGISA T0309 29 :AEYTYDFKEI 1ma3A 41 :LWRKYDPEEV T0309 39 :LSEFNGKNVSI 1ma3A 106 :HQRAGSRRVLE T0309 50 :TVKE 1ma3A 120 :SMDK T0309 54 :ENELPVKG 1ma3A 130 :HETYDWSE Number of specific fragments extracted= 6 number of extra gaps= 0 total=1234 Number of alignments=301 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPL 1ma3A 132 :TYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1235 Number of alignments=302 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 28 :EAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEH 1ma3A 128 :DCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=1236 Number of alignments=303 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 16 :DMDVMEVTEQT 1ma3A 120 :SMDKLDCLDCH T0309 31 :YTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEH 1ma3A 131 :ETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=1238 Number of alignments=304 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 15 :FDMDVMEVTEQT 1ma3A 119 :GSMDKLDCLDCH T0309 31 :YTYDFKEILSEFNGKNV 1ma3A 131 :ETYDWSEFVEDFNKGEI T0309 52 :KEENELPVKGVEMAGDPL 1ma3A 152 :KCGSYYVKPRVVLFGEPL Number of specific fragments extracted= 3 number of extra gaps= 0 total=1241 Number of alignments=305 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ma3A)G40 Warning: unaligning (T0309)E28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ma3A)G40 T0309 1 :MA 1ma3A 1 :ME T0309 3 :SKKVHQINVKGFFD 1ma3A 15 :SKHAVVFTGAGISA T0309 29 :AEYTYDFKEILS 1ma3A 41 :LWRKYDPEEVAS T0309 42 :FNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1ma3A 53 :ISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAE Number of specific fragments extracted= 4 number of extra gaps= 0 total=1245 Number of alignments=306 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 1 :MASK 1ma3A 1 :MEDE T0309 5 :KVHQI 1ma3A 15 :SKHAV T0309 10 :NVKGFFDMD 1ma3A 59 :NPRAFWEFS T0309 38 :ILSEFNGKNVSI 1ma3A 74 :LFAEPNPAHYAI Number of specific fragments extracted= 4 number of extra gaps= 0 total=1249 Number of alignments=307 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 1 :M 1ma3A 1 :M T0309 3 :SKK 1ma3A 42 :WRK T0309 11 :VKGF 1ma3A 94 :VKAV T0309 17 :MDVMEVTE 1ma3A 121 :MDKLDCLD T0309 29 :AEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHH 1ma3A 129 :CHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRT Number of specific fragments extracted= 5 number of extra gaps= 0 total=1254 Number of alignments=308 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ma3A)G40 Warning: unaligning (T0309)E28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ma3A)G40 T0309 1 :M 1ma3A 1 :M T0309 3 :SKKVHQINVKGFFD 1ma3A 15 :SKHAVVFTGAGISA T0309 29 :AEYTYDFKEI 1ma3A 41 :LWRKYDPEEV T0309 39 :LSEFNGKNVSI 1ma3A 106 :HQRAGSRRVLE T0309 50 :TVKE 1ma3A 120 :SMDK T0309 54 :ENELPVKG 1ma3A 130 :HETYDWSE Number of specific fragments extracted= 6 number of extra gaps= 0 total=1260 Number of alignments=309 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPL 1ma3A 132 :TYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1261 Number of alignments=310 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 28 :EAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEH 1ma3A 128 :DCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=1262 Number of alignments=311 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 16 :DMDVMEVTEQT 1ma3A 120 :SMDKLDCLDCH T0309 31 :YTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEH 1ma3A 131 :ETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=1264 Number of alignments=312 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 15 :FDMDVMEVTEQT 1ma3A 119 :GSMDKLDCLDCH T0309 31 :YTYDFKEILSEFNGKNV 1ma3A 131 :ETYDWSEFVEDFNKGEI T0309 52 :KEENELPVKGVEMAGDPL 1ma3A 152 :KCGSYYVKPRVVLFGEPL Number of specific fragments extracted= 3 number of extra gaps= 0 total=1267 Number of alignments=313 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ma3A)G40 Warning: unaligning (T0309)E28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ma3A)G40 T0309 1 :MA 1ma3A 1 :ME T0309 3 :SKKVHQINVKGFFD 1ma3A 15 :SKHAVVFTGAGISA T0309 29 :AEYTYDFKEILS 1ma3A 41 :LWRKYDPEEVAS T0309 42 :FNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1ma3A 53 :ISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAE Number of specific fragments extracted= 4 number of extra gaps= 0 total=1271 Number of alignments=314 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 1 :MASK 1ma3A 1 :MEDE T0309 5 :KVHQI 1ma3A 15 :SKHAV T0309 10 :NVKGFFDMD 1ma3A 59 :NPRAFWEFS T0309 38 :ILSEFNGKNVSI 1ma3A 74 :LFAEPNPAHYAI Number of specific fragments extracted= 4 number of extra gaps= 0 total=1275 Number of alignments=315 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 1 :M 1ma3A 1 :M T0309 3 :SKK 1ma3A 42 :WRK T0309 11 :VKG 1ma3A 94 :VKA T0309 16 :DMDVMEVTE 1ma3A 120 :SMDKLDCLD T0309 29 :AEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHH 1ma3A 129 :CHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRT Number of specific fragments extracted= 5 number of extra gaps= 0 total=1280 Number of alignments=316 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set Warning: unaligning (T0309)M17 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ma3A)G40 Warning: unaligning (T0309)E28 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ma3A)G40 T0309 1 :M 1ma3A 1 :M T0309 3 :SKKVHQINVKGFFD 1ma3A 15 :SKHAVVFTGAGISA T0309 29 :AEYTYDFKEI 1ma3A 41 :LWRKYDPEEV T0309 39 :LSEFNGKNVSI 1ma3A 106 :HQRAGSRRVLE T0309 50 :TVKE 1ma3A 120 :SMDK T0309 54 :ENELPVKG 1ma3A 130 :HETYDWSE Number of specific fragments extracted= 6 number of extra gaps= 0 total=1286 Number of alignments=317 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPL 1ma3A 132 :TYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1287 Number of alignments=318 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 28 :EAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEH 1ma3A 128 :DCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=1288 Number of alignments=319 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 16 :DMDVMEVTEQ 1ma3A 120 :SMDKLDCLDC T0309 30 :EYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEH 1ma3A 130 :HETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=1290 Number of alignments=320 # 1ma3A read from 1ma3A/merged-a2m # found chain 1ma3A in template set T0309 15 :FDMDVMEVTEQT 1ma3A 119 :GSMDKLDCLDCH T0309 31 :YTYDFKEILSEFNGKNV 1ma3A 131 :ETYDWSEFVEDFNKGEI T0309 52 :KEENELPVKGVEMAGDPL 1ma3A 152 :KCGSYYVKPRVVLFGEPL Number of specific fragments extracted= 3 number of extra gaps= 0 total=1293 Number of alignments=321 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a53/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1a53/merged-a2m # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 4 :KKVHQINVK 1a53 45 :ITAIIAEYK T0309 13 :GF 1a53 76 :YA T0309 15 :FDMDVMEVTEQTKEA 1a53 111 :DFIVKESQIDDAYNL T0309 30 :E 1a53 135 :K T0309 31 :YTYDFKEILSEFN 1a53 138 :TERELESLLEYAR T0309 44 :GKNVSITVKEENELPV 1a53 153 :GMEPLIEINDENDLDI T0309 60 :KGV 1a53 172 :IGA T0309 63 :EMAG 1a53 199 :SMIP T0309 67 :DP 1a53 212 :GI T0309 69 :LEHHHHH 1a53 216 :RNEIEEL Number of specific fragments extracted= 10 number of extra gaps= 0 total=1303 Number of alignments=322 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 9 :INVKGFFDMDV 1a53 125 :LGADTVLLIVK T0309 28 :EAEYTYDFKEILSE 1a53 138 :TERELESLLEYARS T0309 43 :NGKNVSITVKEENEL 1a53 152 :YGMEPLIEINDENDL Number of specific fragments extracted= 3 number of extra gaps= 0 total=1306 Number of alignments=323 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MAS 1a53 133 :IVK T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEA 1a53 147 :EYARSYGMEPLIEINDENDLDIALRI T0309 30 :EYTYDFKEILSE 1a53 192 :ENQRKLISMIPS T0309 46 :NVSI 1a53 204 :NVVK T0309 50 :TVKEENELPVKGVEMAG 1a53 218 :EIEELRKLGVNAFLIGS T0309 67 :DPLEHHHHHH 1a53 239 :NPEKIKEFIL Number of specific fragments extracted= 6 number of extra gaps= 0 total=1312 Number of alignments=324 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 3 :SKKVH 1a53 100 :ASSVS T0309 8 :QINVKGFFD 1a53 106 :PILMKDFIV T0309 17 :MDVME 1a53 127 :ADTVL T0309 22 :VTEQTKE 1a53 133 :IVKILTE T0309 30 :EYTYDFKEILSEF 1a53 140 :RELESLLEYARSY T0309 44 :GKNVSI 1a53 153 :GMEPLI T0309 50 :TVK 1a53 161 :NDE T0309 53 :EENELPVKGVEMAG 1a53 221 :ELRKLGVNAFLIGS T0309 67 :DPLEHHHHHH 1a53 239 :NPEKIKEFIL Number of specific fragments extracted= 9 number of extra gaps= 0 total=1321 Number of alignments=325 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNV 1a53 19 :RPSFRASRQRPIISLNERILEFNKRNITAII Number of specific fragments extracted= 1 number of extra gaps= 0 total=1322 Number of alignments=326 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNV 1a53 19 :RPSFRASRQRPIISLNERILEFNKRNITAII Number of specific fragments extracted= 1 number of extra gaps= 0 total=1323 Number of alignments=327 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MASKK 1a53 49 :IAEYK T0309 6 :VHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEF 1a53 116 :ESQIDDAYNLGADTVLLIVKILTERELESLLEYARSY T0309 44 :GKNVSITVKEENEL 1a53 153 :GMEPLIEINDENDL T0309 58 :PVKGVEMAGDPLEHHHHHH 1a53 183 :DLETLEINKENQRKLISMI Number of specific fragments extracted= 4 number of extra gaps= 0 total=1327 Number of alignments=328 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set Warning: unaligning (T0309)H73 because last residue in template chain is (1a53)L248 T0309 1 :MASKKVH 1a53 56 :SPSGLDV T0309 8 :QINVKGFF 1a53 106 :PILMKDFI T0309 16 :DMDVMEVTEQTKEAEYTYDFKEILSEF 1a53 126 :GADTVLLIVKILTERELESLLEYARSY T0309 43 :NGKNVSITVK 1a53 183 :DLETLEINKE T0309 53 :EEN 1a53 197 :LIS T0309 56 :ELP 1a53 204 :NVV T0309 59 :VKGV 1a53 227 :VNAF T0309 64 :MAG 1a53 231 :LIG T0309 67 :DPLEHH 1a53 242 :KIKEFI Number of specific fragments extracted= 9 number of extra gaps= 0 total=1336 Number of alignments=329 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 21 :EVTEQTKEAEYTYDFKEILSEF 1a53 23 :RASRQRPIISLNERILEFNKRN T0309 46 :NVSITVKEENELPVKGVE 1a53 45 :ITAIIAEYKRKSPSGLDV T0309 65 :AGDPLE 1a53 63 :ERDPIE Number of specific fragments extracted= 3 number of extra gaps= 0 total=1339 Number of alignments=330 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 20 :MEVTEQTKEAEYTYDFKEILSEF 1a53 22 :FRASRQRPIISLNERILEFNKRN T0309 46 :NVSITVKEENELPVKGVE 1a53 45 :ITAIIAEYKRKSPSGLDV T0309 65 :AGDPLE 1a53 63 :ERDPIE Number of specific fragments extracted= 3 number of extra gaps= 0 total=1342 Number of alignments=331 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MASKKVHQINV 1a53 7 :GWLKDVVQLSL T0309 12 :KGFF 1a53 28 :RPII T0309 16 :DMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVS 1a53 153 :GMEPLIEINDENDLDIALRIGARFIGINSRDLE T0309 49 :ITVKEENELPVKGVEMAGDP 1a53 206 :VKVAESGISERNEIEELRKL T0309 69 :LEHHHHHH 1a53 237 :MRNPEKIK Number of specific fragments extracted= 5 number of extra gaps= 0 total=1347 Number of alignments=332 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MASKKVHQI 1a53 23 :RASRQRPII T0309 10 :N 1a53 70 :S T0309 11 :VKG 1a53 109 :MKD T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSIT 1a53 151 :SYGMEPLIEINDENDLDIALRIGARFIGINSRDLETL T0309 51 :VKEEN 1a53 195 :RKLIS T0309 56 :ELPVKGV 1a53 224 :KLGVNAF T0309 64 :MAGDPLEHHHHHH 1a53 231 :LIGSSLMRNPEKI Number of specific fragments extracted= 7 number of extra gaps= 0 total=1354 Number of alignments=333 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 15 :FDMDVMEVTEQTKEAEYTYDFKEILSEFNGKN 1a53 152 :YGMEPLIEINDENDLDIALRIGARFIGINSRD Number of specific fragments extracted= 1 number of extra gaps= 0 total=1355 Number of alignments=334 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 37 :EILSEFNGKNV 1a53 35 :ERILEFNKRNI Number of specific fragments extracted= 1 number of extra gaps= 0 total=1356 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 35 :FKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEH 1a53 33 :LNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=1357 Number of alignments=335 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 33 :YDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHH 1a53 31 :ISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=1358 Number of alignments=336 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MASKKVH 1a53 2 :PRYLKGW T0309 11 :VKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1a53 9 :LKDVVQLSLRRPSFRASRQRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYSKFME Number of specific fragments extracted= 2 number of extra gaps= 0 total=1360 Number of alignments=337 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MASKKV 1a53 2 :PRYLKG T0309 10 :NVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHH 1a53 8 :WLKDVVQLSLRRPSFRASRQRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYSKFM Number of specific fragments extracted= 2 number of extra gaps= 0 total=1362 Number of alignments=338 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MASKK 1a53 2 :PRYLK T0309 13 :GFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHH 1a53 11 :DVVQLSLRRPSFRASRQRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1364 Number of alignments=339 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MASKK 1a53 2 :PRYLK T0309 18 :DVMEVTEQTKEAEYT 1a53 11 :DVVQLSLRRPSFRAS T0309 33 :YDFKEILSEF 1a53 31 :ISLNERILEF T0309 43 :NGKNVSIT 1a53 43 :RNITAIIA T0309 53 :EENELPVKGVEMAGDPLEHH 1a53 51 :EYKRKSPSGLDVERDPIEYS Number of specific fragments extracted= 5 number of extra gaps= 0 total=1369 Number of alignments=340 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 35 :FKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEH 1a53 33 :LNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=1370 Number of alignments=341 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHH 1a53 30 :IISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=1371 Number of alignments=342 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 58 :PVKGVEMAGDPLE 1a53 56 :SPSGLDVERDPIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1372 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 33 :YDFKEILSEFNGKNVSITV 1a53 192 :ENQRKLISMIPSNVVKVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1373 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MASKKVH 1a53 2 :PRYLKGW T0309 11 :VKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1a53 9 :LKDVVQLSLRRPSFRASRQRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYSKFME Number of specific fragments extracted= 2 number of extra gaps= 0 total=1375 Number of alignments=343 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MASKKV 1a53 2 :PRYLKG T0309 10 :NVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHH 1a53 8 :WLKDVVQLSLRRPSFRASRQRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYSKFM Number of specific fragments extracted= 2 number of extra gaps= 0 total=1377 Number of alignments=344 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MASKK 1a53 2 :PRYLK T0309 13 :GFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHH 1a53 11 :DVVQLSLRRPSFRASRQRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1379 Number of alignments=345 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MASKK 1a53 2 :PRYLK T0309 18 :DVMEVTEQTKEAEYT 1a53 11 :DVVQLSLRRPSFRAS T0309 33 :YDFKEILSEF 1a53 31 :ISLNERILEF T0309 43 :NGKNVSIT 1a53 43 :RNITAIIA T0309 53 :EENELPVKGVEMAGDPLEHH 1a53 51 :EYKRKSPSGLDVERDPIEYS Number of specific fragments extracted= 5 number of extra gaps= 0 total=1384 Number of alignments=346 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 35 :FKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEH 1a53 33 :LNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=1385 Number of alignments=347 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHH 1a53 30 :IISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=1386 Number of alignments=348 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 58 :PVKGVEMAGDPLE 1a53 56 :SPSGLDVERDPIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1387 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 33 :YDFKEILSEFNGKNVSITV 1a53 192 :ENQRKLISMIPSNVVKVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1388 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MASKKVH 1a53 2 :PRYLKGW T0309 11 :VKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1a53 9 :LKDVVQLSLRRPSFRASRQRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYSKFME Number of specific fragments extracted= 2 number of extra gaps= 0 total=1390 Number of alignments=349 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MASKKV 1a53 2 :PRYLKG T0309 10 :NVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHH 1a53 8 :WLKDVVQLSLRRPSFRASRQRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYSKFM Number of specific fragments extracted= 2 number of extra gaps= 0 total=1392 Number of alignments=350 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MASKK 1a53 2 :PRYLK T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHH 1a53 10 :KDVVQLSLRRPSFRASRQRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1394 Number of alignments=351 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 1 :MASKK 1a53 2 :PRYLK T0309 18 :DVMEVTEQTKEAEYT 1a53 11 :DVVQLSLRRPSFRAS T0309 33 :YDFKEILSEF 1a53 31 :ISLNERILEF T0309 43 :NGKNVSIT 1a53 43 :RNITAIIA T0309 53 :EENELPVKGVEMAGDPLEHH 1a53 51 :EYKRKSPSGLDVERDPIEYS Number of specific fragments extracted= 5 number of extra gaps= 0 total=1399 Number of alignments=352 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 35 :FKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEH 1a53 33 :LNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEY Number of specific fragments extracted= 1 number of extra gaps= 0 total=1400 Number of alignments=353 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHH 1a53 30 :IISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYS Number of specific fragments extracted= 1 number of extra gaps= 0 total=1401 Number of alignments=354 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLE 1a53 23 :RASRQRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1402 Number of alignments=355 # 1a53 read from 1a53/merged-a2m # found chain 1a53 in template set T0309 33 :YDFKEILSEFNGKNVSITV 1a53 192 :ENQRKLISMIPSNVVKVAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1403 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ghtA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ghtA expands to /projects/compbio/data/pdb/1ght.pdb.gz 1ghtA:# T0309 read from 1ghtA/merged-a2m # 1ghtA read from 1ghtA/merged-a2m # adding 1ghtA to template set # found chain 1ghtA in template set Warning: unaligning (T0309)D67 because last residue in template chain is (1ghtA)K105 T0309 1 :MASKKVHQINVKGFFD 1ghtA 21 :RALKDAGVKANRIFTD T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG T0309 59 :VKGVEMAG 1ghtA 97 :ISTDGEMG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1406 Number of alignments=356 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 1 :MA 1ghtA 1 :MR T0309 3 :SKKVHQINVKGFFD 1ghtA 23 :LKDAGVKANRIFTD T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1409 Number of alignments=357 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1410 Number of alignments=358 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1411 Number of alignments=359 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set Warning: unaligning (T0309)V59 because last residue in template chain is (1ghtA)K105 T0309 1 :MA 1ghtA 1 :MR T0309 3 :SKKVHQINVKGFFD 1ghtA 12 :SQQSLDIQVRALKD T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1ghtA 58 :GDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD T0309 55 :NELP 1ghtA 101 :GEMG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1415 Number of alignments=360 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFID Number of specific fragments extracted= 1 number of extra gaps= 0 total=1416 Number of alignments=361 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1417 Number of alignments=362 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 1ghtA 58 :GDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFID Number of specific fragments extracted= 1 number of extra gaps= 0 total=1418 Number of alignments=363 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1ghtA)K105 T0309 1 :M 1ghtA 1 :M T0309 2 :ASKKVHQINVKGFFDM 1ghtA 11 :TSQQSLDIQVRALKDA T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD T0309 61 :GVEMAGDPL 1ghtA 96 :GISTDGEMG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1422 Number of alignments=364 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 1 :M 1ghtA 1 :M T0309 3 :SKKVHQINVKGFFDM 1ghtA 12 :SQQSLDIQVRALKDA T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD T0309 61 :GVEM 1ghtA 96 :GIST Number of specific fragments extracted= 4 number of extra gaps= 0 total=1426 Number of alignments=365 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 1 :M 1ghtA 1 :M T0309 3 :SKK 1ghtA 12 :SQQ T0309 9 :INVKGFF 1ghtA 28 :VKANRIF T0309 16 :DMDVMEVTEQ 1ghtA 49 :DLLRMKVEEG T0309 26 :TKEAEYTYDFKEILSEFNGKNVSITVKE 1ghtA 67 :DRLGRDTADMIQLIKEFDAQGVSIRFID T0309 60 :KGVEM 1ghtA 95 :DGIST T0309 71 :HHHHHH 1ghtA 100 :DGEMGK Number of specific fragments extracted= 7 number of extra gaps= 0 total=1433 Number of alignments=366 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 1 :MAS 1ghtA 1 :MRL T0309 6 :VHQINVK 1ghtA 4 :FGYARVS T0309 15 :FDMDVMEVTEQTKEAEYTYDFKEILSEFNGKN 1ghtA 28 :VKANRIFTDKASGSSSDRKGLDLLRMKVEEGD T0309 48 :SITVKEENELPVK 1ghtA 60 :VILVKKLDRLGRD T0309 61 :GVEM 1ghtA 87 :GVSI T0309 65 :AGDPLEHHHHHH 1ghtA 94 :DDGISTDGEMGK Number of specific fragments extracted= 6 number of extra gaps= 0 total=1439 Number of alignments=367 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1440 Number of alignments=368 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1ghtA 58 :GDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=1441 Number of alignments=369 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 26 :TKEAEYTYDFKEILSEFNGKNVSITVKE 1ghtA 67 :DRLGRDTADMIQLIKEFDAQGVSIRFID T0309 60 :KGVEMAGD 1ghtA 95 :DGISTDGE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1443 Number of alignments=370 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 22 :VTEQTKEAEYTYDFKEILSEFN 1ghtA 63 :VKKLDRLGRDTADMIQLIKEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=1444 Number of alignments=371 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1ghtA)K105 T0309 1 :M 1ghtA 1 :M T0309 2 :ASKKVHQINVKGFFDM 1ghtA 11 :TSQQSLDIQVRALKDA T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD T0309 61 :GVEMAGDPL 1ghtA 96 :GISTDGEMG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1448 Number of alignments=372 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 1 :M 1ghtA 1 :M T0309 3 :SKKVHQINVKGFFDM 1ghtA 12 :SQQSLDIQVRALKDA T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD T0309 61 :GVEM 1ghtA 96 :GIST Number of specific fragments extracted= 4 number of extra gaps= 0 total=1452 Number of alignments=373 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 1 :M 1ghtA 1 :M T0309 3 :SKK 1ghtA 12 :SQQ T0309 9 :INVKGFF 1ghtA 28 :VKANRIF T0309 16 :DMDVMEVTEQ 1ghtA 49 :DLLRMKVEEG T0309 26 :TKEAEYTYDFKEILSEFNGKNVSITVKE 1ghtA 67 :DRLGRDTADMIQLIKEFDAQGVSIRFID T0309 60 :KGVEM 1ghtA 95 :DGIST T0309 71 :HHHHHH 1ghtA 100 :DGEMGK Number of specific fragments extracted= 7 number of extra gaps= 0 total=1459 Number of alignments=374 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 1 :MAS 1ghtA 1 :MRL T0309 6 :VHQINVK 1ghtA 4 :FGYARVS T0309 15 :FDMDVMEVTEQTKEAEYTYDFKEILSEFNGKN 1ghtA 28 :VKANRIFTDKASGSSSDRKGLDLLRMKVEEGD T0309 48 :SITVKEENELPVK 1ghtA 60 :VILVKKLDRLGRD T0309 61 :GVEM 1ghtA 87 :GVSI T0309 65 :AGDPLEHHHHHH 1ghtA 94 :DDGISTDGEMGK Number of specific fragments extracted= 6 number of extra gaps= 0 total=1465 Number of alignments=375 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1466 Number of alignments=376 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1ghtA 58 :GDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=1467 Number of alignments=377 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 26 :TKEAEYTYDFKEILSEFNGKNVSITVKE 1ghtA 67 :DRLGRDTADMIQLIKEFDAQGVSIRFID T0309 60 :KGVEMAGD 1ghtA 95 :DGISTDGE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1469 Number of alignments=378 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 22 :VTEQTKEAEYTYDFKEILSEFN 1ghtA 63 :VKKLDRLGRDTADMIQLIKEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=1470 Number of alignments=379 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1ghtA)K105 T0309 1 :M 1ghtA 1 :M T0309 2 :ASKKVHQINVKGFFDM 1ghtA 11 :TSQQSLDIQVRALKDA T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD T0309 61 :GVEMAGDPL 1ghtA 96 :GISTDGEMG Number of specific fragments extracted= 4 number of extra gaps= 0 total=1474 Number of alignments=380 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 1 :M 1ghtA 1 :M T0309 3 :SKKVHQINVKGFFDM 1ghtA 12 :SQQSLDIQVRALKDA T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD T0309 61 :GVEM 1ghtA 96 :GIST Number of specific fragments extracted= 4 number of extra gaps= 0 total=1478 Number of alignments=381 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 1 :M 1ghtA 1 :M T0309 2 :ASKK 1ghtA 11 :TSQQ T0309 9 :INVKGFF 1ghtA 28 :VKANRIF T0309 16 :DMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITV 1ghtA 57 :EGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRF T0309 64 :MAGDPLEHHHHHH 1ghtA 93 :IDDGISTDGEMGK Number of specific fragments extracted= 5 number of extra gaps= 0 total=1483 Number of alignments=382 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 1 :MAS 1ghtA 1 :MRL T0309 6 :VHQINVK 1ghtA 4 :FGYARVS T0309 15 :FDMDVMEVTEQTKEAEYTYDFKEILSEFNGKN 1ghtA 28 :VKANRIFTDKASGSSSDRKGLDLLRMKVEEGD T0309 48 :SITVKEENELPVK 1ghtA 60 :VILVKKLDRLGRD T0309 61 :GVEM 1ghtA 87 :GVSI T0309 65 :AGDPLEHHHHHH 1ghtA 94 :DDGISTDGEMGK Number of specific fragments extracted= 6 number of extra gaps= 0 total=1489 Number of alignments=383 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1490 Number of alignments=384 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1ghtA 58 :GDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD Number of specific fragments extracted= 1 number of extra gaps= 0 total=1491 Number of alignments=385 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 1ghtA 59 :DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFID T0309 60 :KGVEMAGD 1ghtA 95 :DGISTDGE Number of specific fragments extracted= 2 number of extra gaps= 0 total=1493 Number of alignments=386 # 1ghtA read from 1ghtA/merged-a2m # found chain 1ghtA in template set T0309 22 :VTEQTKEAEYTYDFKEILSEFN 1ghtA 63 :VKKLDRLGRDTADMIQLIKEFD Number of specific fragments extracted= 1 number of extra gaps= 0 total=1494 Number of alignments=387 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2aioA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2aioA expands to /projects/compbio/data/pdb/2aio.pdb.gz 2aioA:# T0309 read from 2aioA/merged-a2m # 2aioA read from 2aioA/merged-a2m # adding 2aioA to template set # found chain 2aioA in template set T0309 1 :MASKKVHQ 2aioA 42 :MAPLQIAD T0309 9 :INVKGFFDM 2aioA 52 :TWQIGTEDL T0309 18 :DVMEVTEQTKEAEYT 2aioA 91 :MASHLLDNMKARGVT T0309 33 :YDFKEILSEF 2aioA 132 :TGAKVAANAE T0309 43 :NGKNVSITVKEENELPVKG 2aioA 165 :PPANADRIVMDGEVITVGG T0309 62 :VEM 2aioA 216 :IAY T0309 66 :GDPLEHHHHHH 2aioA 219 :ADSLSAPGYQL Number of specific fragments extracted= 7 number of extra gaps= 0 total=1501 Number of alignments=388 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 1 :MASKKVHQ 2aioA 42 :MAPLQIAD T0309 9 :INVKGF 2aioA 55 :IGTEDL T0309 15 :FDMDVMEVTEQTKEAEYT 2aioA 87 :MPQMASHLLDNMKARGVT T0309 33 :YDFKEILSEF 2aioA 132 :TGAKVAANAE T0309 43 :NGKNVSITVKEENELPVKG 2aioA 165 :PPANADRIVMDGEVITVGG T0309 62 :VEM 2aioA 216 :IAY T0309 66 :GDPLEHHHHHH 2aioA 219 :ADSLSAPGYQL Number of specific fragments extracted= 7 number of extra gaps= 0 total=1508 Number of alignments=389 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set Warning: unaligning (T0309)H72 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2aioA)T197 T0309 2 :ASKKVHQINVKGFFDMDVMEVTE 2aioA 138 :ANAESAVLLARGGSDDLHFGDGI T0309 41 :EFNGKNVSITVKEENELPVKGVEMAGDPLEH 2aioA 163 :TYPPANADRIVMDGEVITVGGIVFTAHFMAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=1510 Number of alignments=390 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 41 :EFNGKNVSITVKEENELPVKGVEMAGDP 2aioA 163 :TYPPANADRIVMDGEVITVGGIVFTAHF Number of specific fragments extracted= 1 number of extra gaps= 0 total=1511 Number of alignments=391 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 1 :MASKKV 2aioA 104 :VTPRDL T0309 7 :HQINVKGF 2aioA 121 :HAGPVAEL T0309 15 :FDMD 2aioA 132 :TGAK T0309 20 :MEVTEQT 2aioA 136 :VAANAES T0309 27 :KEAEYTYDFKE 2aioA 165 :PPANADRIVMD T0309 39 :LSEFNGKNVSITVKEEN 2aioA 177 :GEVITVGGIVFTAHFMA T0309 56 :ELPVKG 2aioA 205 :WTDTRN T0309 62 :VEM 2aioA 216 :IAY T0309 66 :GDPLEHHHHHH 2aioA 219 :ADSLSAPGYQL Number of specific fragments extracted= 9 number of extra gaps= 0 total=1520 Number of alignments=392 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 1 :MASKKV 2aioA 42 :MAPLQI T0309 7 :HQ 2aioA 100 :KA T0309 9 :IN 2aioA 104 :VT T0309 11 :VKGFFD 2aioA 109 :LRLILL T0309 17 :MDVMEV 2aioA 123 :GPVAEL T0309 23 :TEQT 2aioA 139 :NAES T0309 27 :KEAEYTYDFKE 2aioA 165 :PPANADRIVMD T0309 39 :LSEFNGKNVSITVKEEN 2aioA 177 :GEVITVGGIVFTAHFMA T0309 56 :ELPVKG 2aioA 205 :WTDTRN T0309 62 :VEM 2aioA 216 :IAY T0309 66 :GDPLEHHHHHH 2aioA 219 :ADSLSAPGYQL Number of specific fragments extracted= 11 number of extra gaps= 0 total=1531 Number of alignments=393 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set Warning: unaligning (T0309)H72 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2aioA)T197 T0309 2 :ASKKVHQINVKGFFDMDVMEVTE 2aioA 138 :ANAESAVLLARGGSDDLHFGDGI T0309 41 :EFNGKNVSITVKEENELPVKGVEMAGDPLEH 2aioA 163 :TYPPANADRIVMDGEVITVGGIVFTAHFMAG Number of specific fragments extracted= 2 number of extra gaps= 1 total=1533 Number of alignments=394 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set Warning: unaligning (T0309)H72 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2aioA)T197 T0309 41 :EFNGKNVSITVKEENELPVKGVEMAGDPLEH 2aioA 163 :TYPPANADRIVMDGEVITVGGIVFTAHFMAG Number of specific fragments extracted= 1 number of extra gaps= 1 total=1534 Number of alignments=395 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set Warning: unaligning (T0309)H72 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2aioA)T197 Warning: unaligning (T0309)H73 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2aioA)T197 T0309 1 :MA 2aioA 91 :MA T0309 20 :MEVTEQTKEAEYT 2aioA 93 :SHLLDNMKARGVT T0309 33 :YDFKEILSEF 2aioA 132 :TGAKVAANAE T0309 43 :NGKNVSITVKEENELPVKGVEMAGDPLEH 2aioA 165 :PPANADRIVMDGEVITVGGIVFTAHFMAG T0309 74 :HHH 2aioA 198 :PGS Number of specific fragments extracted= 5 number of extra gaps= 1 total=1539 Number of alignments=396 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set Warning: unaligning (T0309)H72 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2aioA)T197 Warning: unaligning (T0309)H73 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2aioA)T197 T0309 1 :MASKKVHQINVKGFF 2aioA 91 :MASHLLDNMKARGVT T0309 16 :DM 2aioA 108 :DL T0309 18 :DVMEVTEQTKEAEYTYDF 2aioA 132 :TGAKVAANAESAVLLARG T0309 39 :L 2aioA 153 :D T0309 40 :SEFNGKNVSITVKEENELPVKGVEMAGDPLEH 2aioA 162 :ITYPPANADRIVMDGEVITVGGIVFTAHFMAG T0309 74 :HHH 2aioA 198 :PGS Number of specific fragments extracted= 6 number of extra gaps= 1 total=1545 Number of alignments=397 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set Warning: unaligning (T0309)H72 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2aioA)T197 Warning: unaligning (T0309)H73 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2aioA)T197 T0309 42 :FNGKNVSITVKEENELPVKGVEMAGDPLEH 2aioA 164 :YPPANADRIVMDGEVITVGGIVFTAHFMAG T0309 74 :HHH 2aioA 198 :PGS Number of specific fragments extracted= 2 number of extra gaps= 1 total=1547 Number of alignments=398 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 42 :FNGKNVSITVKEENELPVKGV 2aioA 164 :YPPANADRIVMDGEVITVGGI Number of specific fragments extracted= 1 number of extra gaps= 0 total=1548 Number of alignments=399 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 43 :NGKNVSITV 2aioA 210 :NGKPVRIAY T0309 54 :ENELPVKGVEMAGDPLEHH 2aioA 219 :ADSLSAPGYQLQGNPRYPH Number of specific fragments extracted= 2 number of extra gaps= 0 total=1550 Number of alignments=400 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 42 :FNGKNVSITVK 2aioA 209 :RNGKPVRIAYA T0309 55 :NELPVKGVEMAGDPLEHH 2aioA 220 :DSLSAPGYQLQGNPRYPH Number of specific fragments extracted= 2 number of extra gaps= 0 total=1552 Number of alignments=401 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAEY 2aioA 26 :LPQLRAYTVDASWLQPMAPLQIADHTWQIGT T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 2aioA 75 :TPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADH Number of specific fragments extracted= 2 number of extra gaps= 0 total=1554 Number of alignments=402 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAE 2aioA 26 :LPQLRAYTVDASWLQPMAPLQIADHTWQIG T0309 32 :TYDFKEILSE 2aioA 57 :TEDLTALLVQ T0309 42 :FNGKNVSITVKEENELPVKGVEMAGDP 2aioA 83 :LDGGMPQMASHLLDNMKARGVTPRDLR T0309 69 :LEHHHHHH 2aioA 114 :LSHAHADH Number of specific fragments extracted= 4 number of extra gaps= 0 total=1558 Number of alignments=403 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set Warning: unaligning (T0309)A2 because first residue in template chain is (2aioA)E23 T0309 3 :SK 2aioA 24 :VP T0309 5 :KVHQINVKGFFDMDVMEVTE 2aioA 30 :RAYTVDASWLQPMAPLQIAD T0309 26 :TKE 2aioA 105 :TPR T0309 35 :FKE 2aioA 128 :LKR T0309 38 :ILS 2aioA 145 :LLA T0309 43 :NGKNVSITV 2aioA 210 :NGKPVRIAY T0309 57 :LPVKGVEMAGDPLEHHH 2aioA 222 :LSAPGYQLQGNPRYPHL Number of specific fragments extracted= 7 number of extra gaps= 0 total=1565 Number of alignments=404 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set Warning: unaligning (T0309)A2 because first residue in template chain is (2aioA)E23 T0309 3 :SK 2aioA 24 :VP T0309 5 :KVHQIN 2aioA 43 :APLQIA T0309 12 :KGFFDMDVMEVT 2aioA 80 :AVLLDGGMPQMA T0309 26 :TKEAE 2aioA 106 :PRDLR T0309 35 :FKEILSEF 2aioA 125 :VAELKRRT T0309 43 :NGKNVSITVK 2aioA 210 :NGKPVRIAYA T0309 55 :NELPVKGVEMAGDPLEHH 2aioA 220 :DSLSAPGYQLQGNPRYPH Number of specific fragments extracted= 7 number of extra gaps= 0 total=1572 Number of alignments=405 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 43 :NGKNVSITV 2aioA 210 :NGKPVRIAY T0309 54 :ENELPVKGVEMAGDPLEHH 2aioA 219 :ADSLSAPGYQLQGNPRYPH Number of specific fragments extracted= 2 number of extra gaps= 0 total=1574 Number of alignments=406 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 42 :FNGKNVSITVK 2aioA 209 :RNGKPVRIAYA T0309 55 :NELPVKGVEMAGDPLEHH 2aioA 220 :DSLSAPGYQLQGNPRYPH Number of specific fragments extracted= 2 number of extra gaps= 0 total=1576 Number of alignments=407 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 43 :NGKNVSITV 2aioA 210 :NGKPVRIAY T0309 57 :LPVKGVEMAGDPLEHH 2aioA 222 :LSAPGYQLQGNPRYPH Number of specific fragments extracted= 2 number of extra gaps= 0 total=1578 Number of alignments=408 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 43 :NGKNVSITVK 2aioA 210 :NGKPVRIAYA T0309 55 :NELPVKGVEMAGDPL 2aioA 220 :DSLSAPGYQLQGNPR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1580 Number of alignments=409 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAEY 2aioA 26 :LPQLRAYTVDASWLQPMAPLQIADHTWQIGT T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 2aioA 75 :TPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADH Number of specific fragments extracted= 2 number of extra gaps= 0 total=1582 Number of alignments=410 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAE 2aioA 26 :LPQLRAYTVDASWLQPMAPLQIADHTWQIG T0309 32 :TYDFKEILSE 2aioA 57 :TEDLTALLVQ T0309 42 :FNGKNVSITVKEENELPVKGVEMAGDP 2aioA 83 :LDGGMPQMASHLLDNMKARGVTPRDLR T0309 69 :LEHHHHHH 2aioA 114 :LSHAHADH Number of specific fragments extracted= 4 number of extra gaps= 0 total=1586 Number of alignments=411 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set Warning: unaligning (T0309)A2 because first residue in template chain is (2aioA)E23 T0309 3 :SK 2aioA 24 :VP T0309 5 :KVHQINVKGFFDMDVMEVTE 2aioA 30 :RAYTVDASWLQPMAPLQIAD T0309 26 :TKE 2aioA 105 :TPR T0309 35 :FKE 2aioA 128 :LKR T0309 38 :ILS 2aioA 145 :LLA T0309 43 :NGKNVSITV 2aioA 210 :NGKPVRIAY T0309 57 :LPVKGVEMAGDPLEHHH 2aioA 222 :LSAPGYQLQGNPRYPHL Number of specific fragments extracted= 7 number of extra gaps= 0 total=1593 Number of alignments=412 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set Warning: unaligning (T0309)A2 because first residue in template chain is (2aioA)E23 T0309 3 :SK 2aioA 24 :VP T0309 5 :KVHQIN 2aioA 43 :APLQIA T0309 12 :KGFFDMDVMEVT 2aioA 80 :AVLLDGGMPQMA T0309 26 :TKEAE 2aioA 106 :PRDLR T0309 35 :FKEILSEF 2aioA 125 :VAELKRRT T0309 43 :NGKNVSITVK 2aioA 210 :NGKPVRIAYA T0309 55 :NELPVKGVEMAGDPLEHH 2aioA 220 :DSLSAPGYQLQGNPRYPH Number of specific fragments extracted= 7 number of extra gaps= 0 total=1600 Number of alignments=413 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 43 :NGKNVSITV 2aioA 210 :NGKPVRIAY T0309 54 :ENELPVKGVEMAGDPLEHH 2aioA 219 :ADSLSAPGYQLQGNPRYPH Number of specific fragments extracted= 2 number of extra gaps= 0 total=1602 Number of alignments=414 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 42 :FNGKNVSITVK 2aioA 209 :RNGKPVRIAYA T0309 55 :NELPVKGVEMAGDPLEHH 2aioA 220 :DSLSAPGYQLQGNPRYPH Number of specific fragments extracted= 2 number of extra gaps= 0 total=1604 Number of alignments=415 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 43 :NGKNVSITV 2aioA 210 :NGKPVRIAY T0309 57 :LPVKGVEMAGDPLEHH 2aioA 222 :LSAPGYQLQGNPRYPH Number of specific fragments extracted= 2 number of extra gaps= 0 total=1606 Number of alignments=416 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 43 :NGKNVSITVK 2aioA 210 :NGKPVRIAYA T0309 55 :NELPVKGVEMAGDPL 2aioA 220 :DSLSAPGYQLQGNPR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1608 Number of alignments=417 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAEY 2aioA 26 :LPQLRAYTVDASWLQPMAPLQIADHTWQIGT T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 2aioA 75 :TPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADH Number of specific fragments extracted= 2 number of extra gaps= 0 total=1610 Number of alignments=418 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAE 2aioA 26 :LPQLRAYTVDASWLQPMAPLQIADHTWQIG T0309 32 :TYDFKEILSE 2aioA 57 :TEDLTALLVQ T0309 42 :FNGKNVSITVKEENELPVKGVEMAGDP 2aioA 83 :LDGGMPQMASHLLDNMKARGVTPRDLR T0309 69 :LEHHHHHH 2aioA 114 :LSHAHADH Number of specific fragments extracted= 4 number of extra gaps= 0 total=1614 Number of alignments=419 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set Warning: unaligning (T0309)A2 because first residue in template chain is (2aioA)E23 T0309 3 :SK 2aioA 24 :VP T0309 5 :KVHQINVKGFFDMDVMEVTE 2aioA 30 :RAYTVDASWLQPMAPLQIAD T0309 26 :TKE 2aioA 105 :TPR T0309 35 :FKE 2aioA 128 :LKR T0309 38 :ILSE 2aioA 145 :LLAR T0309 43 :NGKNVSITV 2aioA 210 :NGKPVRIAY T0309 57 :LPVKGVEMAGDPLEHHH 2aioA 222 :LSAPGYQLQGNPRYPHL Number of specific fragments extracted= 7 number of extra gaps= 0 total=1621 Number of alignments=420 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set Warning: unaligning (T0309)A2 because first residue in template chain is (2aioA)E23 T0309 3 :SK 2aioA 24 :VP T0309 5 :KVHQIN 2aioA 43 :APLQIA T0309 12 :KGFFDMDVMEVT 2aioA 80 :AVLLDGGMPQMA T0309 26 :TKEAE 2aioA 106 :PRDLR T0309 35 :FKEILSEF 2aioA 125 :VAELKRRT T0309 43 :NGKNVSITVK 2aioA 210 :NGKPVRIAYA T0309 55 :NELPVKGVEMAGDPLEHH 2aioA 220 :DSLSAPGYQLQGNPRYPH Number of specific fragments extracted= 7 number of extra gaps= 0 total=1628 Number of alignments=421 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 43 :NGKNVSITV 2aioA 210 :NGKPVRIAY T0309 54 :ENELPVKGVEMAGDPLEHH 2aioA 219 :ADSLSAPGYQLQGNPRYPH Number of specific fragments extracted= 2 number of extra gaps= 0 total=1630 Number of alignments=422 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 42 :FNGKNVSITVK 2aioA 209 :RNGKPVRIAYA T0309 55 :NELPVKGVEMAGDPLEHH 2aioA 220 :DSLSAPGYQLQGNPRYPH Number of specific fragments extracted= 2 number of extra gaps= 0 total=1632 Number of alignments=423 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 43 :NGKNVSITV 2aioA 210 :NGKPVRIAY T0309 57 :LPVKGVEMAGDPLEHH 2aioA 222 :LSAPGYQLQGNPRYPH Number of specific fragments extracted= 2 number of extra gaps= 0 total=1634 Number of alignments=424 # 2aioA read from 2aioA/merged-a2m # found chain 2aioA in template set T0309 43 :NGKNVSITVK 2aioA 210 :NGKPVRIAYA T0309 55 :NELPVKGVEMAGDPL 2aioA 220 :DSLSAPGYQLQGNPR Number of specific fragments extracted= 2 number of extra gaps= 0 total=1636 Number of alignments=425 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1y96B/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1y96B/merged-a2m # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MA 1y96B 47 :AQ T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1y96B 49 :ESLESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAAH T0309 61 :GVEMAGDPLEHHHHHH 1y96B 116 :EALLRCSDIISYTFKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1639 Number of alignments=426 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MA 1y96B 47 :AQ T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1y96B 49 :ESLESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAAH T0309 61 :GVEM 1y96B 96 :DLDV T0309 65 :AGDPLEHHHHHH 1y96B 120 :RCSDIISYTFKP Number of specific fragments extracted= 4 number of extra gaps= 0 total=1643 Number of alignments=427 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 1y96B 51 :LESQEQRARAALRERYLRSLLAMVGHQVSFTLHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1644 Number of alignments=428 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1y96B 51 :LESQEQRARAALRERYLRSLLAMVGHQVSFTLHEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1645 Number of alignments=429 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set Warning: unaligning (T0309)G13 because first residue in template chain is (1y96B)A47 Warning: unaligning (T0309)H71 because last residue in template chain is (1y96B)P131 T0309 14 :FFDMD 1y96B 48 :QESLE T0309 22 :VTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 1y96B 53 :SQEQRARAALRERYLRSLLAMVGHQVSFTLHE T0309 54 :ENELPVKGVEMAGDPLE 1y96B 114 :QAEALLRCSDIISYTFK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1648 Number of alignments=430 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1y96B)A47 Warning: unaligning (T0309)H71 because last residue in template chain is (1y96B)P131 T0309 3 :SKKVH 1y96B 48 :QESLE T0309 22 :VTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1y96B 53 :SQEQRARAALRERYLRSLLAMVGHQVSFTLHEG T0309 55 :NELPVKGVEMAGDPLE 1y96B 115 :AEALLRCSDIISYTFK Number of specific fragments extracted= 3 number of extra gaps= 0 total=1651 Number of alignments=431 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 13 :GFFDMDVMEV 1y96B 93 :GATDLDVANF Number of specific fragments extracted= 1 number of extra gaps= 0 total=1652 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 31 :YTYDFKEILSEFNGKNVSITVK 1y96B 62 :LRERYLRSLLAMVGHQVSFTLH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1653 Number of alignments=432 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MA 1y96B 47 :AQ T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1y96B 49 :ESLESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAAH T0309 61 :GVEMAGDPLEHHHHHH 1y96B 116 :EALLRCSDIISYTFKP Number of specific fragments extracted= 3 number of extra gaps= 0 total=1656 Number of alignments=433 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MA 1y96B 47 :AQ T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1y96B 49 :ESLESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAAH T0309 61 :GVEM 1y96B 96 :DLDV T0309 65 :AGDPLEHHHHHH 1y96B 120 :RCSDIISYTFKP Number of specific fragments extracted= 4 number of extra gaps= 0 total=1660 Number of alignments=434 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 1y96B 51 :LESQEQRARAALRERYLRSLLAMVGHQVSFTLHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1661 Number of alignments=435 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1y96B 51 :LESQEQRARAALRERYLRSLLAMVGHQVSFTLHEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1662 Number of alignments=436 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 1y96B 51 :LESQEQRARAALRERYLRSLLAMVGHQVSFTLHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1663 Number of alignments=437 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 23 :TEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1y96B 54 :QEQRARAALRERYLRSLLAMVGHQVSFTLHEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1664 Number of alignments=438 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MA 1y96B 47 :AQ T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1y96B 49 :ESLESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1666 Number of alignments=439 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MA 1y96B 47 :AQ T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEM 1y96B 49 :ESLESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGAT T0309 68 :PLE 1y96B 96 :DLD Number of specific fragments extracted= 3 number of extra gaps= 0 total=1669 Number of alignments=440 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MASK 1y96B 47 :AQES T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1y96B 51 :LESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAAH T0309 61 :GVEMA 1y96B 94 :ATDLD T0309 66 :GDPLEHHH 1y96B 108 :QTPIGVQA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1673 Number of alignments=441 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MASK 1y96B 47 :AQES T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPV 1y96B 51 :LESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1675 Number of alignments=442 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 1y96B 51 :LESQEQRARAALRERYLRSLLAMVGHQVSFTLHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1676 Number of alignments=443 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 22 :VTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1y96B 53 :SQEQRARAALRERYLRSLLAMVGHQVSFTLHEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1677 Number of alignments=444 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPV 1y96B 49 :ESLESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=1678 Number of alignments=445 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPV 1y96B 55 :EQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=1679 Number of alignments=446 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MA 1y96B 47 :AQ T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1y96B 49 :ESLESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1681 Number of alignments=447 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MA 1y96B 47 :AQ T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEM 1y96B 49 :ESLESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGAT T0309 68 :PLE 1y96B 96 :DLD Number of specific fragments extracted= 3 number of extra gaps= 0 total=1684 Number of alignments=448 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MASK 1y96B 47 :AQES T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1y96B 51 :LESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAAH T0309 61 :GVEMA 1y96B 94 :ATDLD T0309 66 :GDPLEHHH 1y96B 108 :QTPIGVQA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1688 Number of alignments=449 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MASK 1y96B 47 :AQES T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPV 1y96B 51 :LESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAA Number of specific fragments extracted= 2 number of extra gaps= 0 total=1690 Number of alignments=450 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 1y96B 51 :LESQEQRARAALRERYLRSLLAMVGHQVSFTLHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1691 Number of alignments=451 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 22 :VTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1y96B 53 :SQEQRARAALRERYLRSLLAMVGHQVSFTLHEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1692 Number of alignments=452 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPV 1y96B 49 :ESLESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=1693 Number of alignments=453 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPV 1y96B 55 :EQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=1694 Number of alignments=454 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MA 1y96B 47 :AQ T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1y96B 49 :ESLESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1696 Number of alignments=455 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MA 1y96B 47 :AQ T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEM 1y96B 49 :ESLESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGAT T0309 68 :PLE 1y96B 96 :DLD Number of specific fragments extracted= 3 number of extra gaps= 0 total=1699 Number of alignments=456 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MASK 1y96B 47 :AQES T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPV 1y96B 51 :LESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAA T0309 60 :KGVEMA 1y96B 93 :GATDLD T0309 66 :GDPLEHHH 1y96B 108 :QTPIGVQA Number of specific fragments extracted= 4 number of extra gaps= 0 total=1703 Number of alignments=457 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 1 :MASK 1y96B 47 :AQES T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPV 1y96B 51 :LESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAA T0309 60 :KGVEMAG 1y96B 93 :GATDLDV Number of specific fragments extracted= 3 number of extra gaps= 0 total=1706 Number of alignments=458 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 1y96B 51 :LESQEQRARAALRERYLRSLLAMVGHQVSFTLHE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1707 Number of alignments=459 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 22 :VTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1y96B 53 :SQEQRARAALRERYLRSLLAMVGHQVSFTLHEG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1708 Number of alignments=460 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 18 :DVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPV 1y96B 49 :ESLESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=1709 Number of alignments=461 # 1y96B read from 1y96B/merged-a2m # found chain 1y96B in template set T0309 24 :EQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPV 1y96B 55 :EQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAA Number of specific fragments extracted= 1 number of extra gaps= 0 total=1710 Number of alignments=462 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bdtA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 2bdtA/merged-a2m # 2bdtA read from 2bdtA/merged-a2m # found chain 2bdtA in template set Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 40 :SEFNGKNVSITVKEENELPVKGV 2bdtA 153 :SHLQPTNLNDIVKNLKTNPRFIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=1711 Number of alignments=463 # 2bdtA read from 2bdtA/merged-a2m # found chain 2bdtA in template set Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 41 :EFNGKNVSITVKEENELPVKGV 2bdtA 154 :HLQPTNLNDIVKNLKTNPRFIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=1712 Number of alignments=464 # 2bdtA read from 2bdtA/merged-a2m # found chain 2bdtA in template set Warning: unaligning (T0309)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bdtA)G129 Warning: unaligning (T0309)T32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bdtA)G129 Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 1 :M 2bdtA 1 :M T0309 2 :ASKKVHQINVKGFFDMDVMEVTEQT 2bdtA 50 :ESDELLALTWKNITDLTVNFLLAQN T0309 33 :YDFKEILSEFNGK 2bdtA 130 :ERCLELVEEFESK T0309 46 :NVSITVKEENELPVKGV 2bdtA 159 :NLNDIVKNLKTNPRFIF Number of specific fragments extracted= 4 number of extra gaps= 0 total=1716 Number of alignments=465 # 2bdtA read from 2bdtA/merged-a2m # found chain 2bdtA in template set Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 1 :M 2bdtA 1 :M T0309 3 :SKKVHQINVKGFFDMDV 2bdtA 51 :SDELLALTWKNITDLTV T0309 20 :MEVTEQTKEAE 2bdtA 87 :AEALAQTVQAK T0309 37 :EILSEFNGK 2bdtA 134 :ELVEEFESK T0309 46 :NVSITVKEENELPVKGV 2bdtA 159 :NLNDIVKNLKTNPRFIF Number of specific fragments extracted= 5 number of extra gaps= 0 total=1721 Number of alignments=466 # 2bdtA read from 2bdtA/merged-a2m # found chain 2bdtA in template set Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 40 :SEFNGKNVSITVKEENELPVKGV 2bdtA 153 :SHLQPTNLNDIVKNLKTNPRFIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=1722 Number of alignments=467 # 2bdtA read from 2bdtA/merged-a2m # found chain 2bdtA in template set Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 40 :SEFNGKNVSITVKEENELPVKGV 2bdtA 153 :SHLQPTNLNDIVKNLKTNPRFIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=1723 Number of alignments=468 # 2bdtA read from 2bdtA/merged-a2m # found chain 2bdtA in template set Warning: unaligning (T0309)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bdtA)G129 Warning: unaligning (T0309)T32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bdtA)G129 Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 1 :M 2bdtA 1 :M T0309 2 :ASKKVHQINVKGFFDMDVMEVTEQT 2bdtA 50 :ESDELLALTWKNITDLTVNFLLAQN T0309 33 :YDFKEILSEFNGK 2bdtA 130 :ERCLELVEEFESK T0309 46 :NVSITVKEENELPVKGV 2bdtA 159 :NLNDIVKNLKTNPRFIF Number of specific fragments extracted= 4 number of extra gaps= 0 total=1727 Number of alignments=469 # 2bdtA read from 2bdtA/merged-a2m # found chain 2bdtA in template set Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 1 :M 2bdtA 1 :M T0309 3 :SKKVHQINVKGFFDMDV 2bdtA 51 :SDELLALTWKNITDLTV T0309 20 :MEVTEQTKEAE 2bdtA 87 :AEALAQTVQAK T0309 37 :EILSEFNGK 2bdtA 134 :ELVEEFESK T0309 46 :NVSITVKEENELPVKGV 2bdtA 159 :NLNDIVKNLKTNPRFIF Number of specific fragments extracted= 5 number of extra gaps= 0 total=1732 Number of alignments=470 # 2bdtA read from 2bdtA/merged-a2m # found chain 2bdtA in template set Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 40 :SEFNGKNVSITVKEENELPVKGV 2bdtA 153 :SHLQPTNLNDIVKNLKTNPRFIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=1733 Number of alignments=471 # 2bdtA read from 2bdtA/merged-a2m # found chain 2bdtA in template set Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 40 :SEFNGKNVSITVKEENELPVKGV 2bdtA 153 :SHLQPTNLNDIVKNLKTNPRFIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=1734 Number of alignments=472 # 2bdtA read from 2bdtA/merged-a2m # found chain 2bdtA in template set Warning: unaligning (T0309)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bdtA)G129 Warning: unaligning (T0309)T32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bdtA)G129 Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 1 :M 2bdtA 1 :M T0309 2 :ASKKVHQINVKGFFDMDVMEVTEQT 2bdtA 50 :ESDELLALTWKNITDLTVNFLLAQN T0309 33 :YDFKEILSEFNGK 2bdtA 130 :ERCLELVEEFESK T0309 46 :NVSITVKEENELPVKGV 2bdtA 159 :NLNDIVKNLKTNPRFIF Number of specific fragments extracted= 4 number of extra gaps= 0 total=1738 Number of alignments=473 # 2bdtA read from 2bdtA/merged-a2m # found chain 2bdtA in template set Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 1 :M 2bdtA 1 :M T0309 3 :SKKVHQINVKGFFDMDV 2bdtA 51 :SDELLALTWKNITDLTV T0309 20 :MEVTEQTKEAE 2bdtA 87 :AEALAQTVQAK T0309 37 :EILSEFNGK 2bdtA 134 :ELVEEFESK T0309 46 :NVSITVKEENELPVKGV 2bdtA 159 :NLNDIVKNLKTNPRFIF Number of specific fragments extracted= 5 number of extra gaps= 0 total=1743 Number of alignments=474 # 2bdtA read from 2bdtA/merged-a2m # found chain 2bdtA in template set Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 40 :SEFNGKNVSITVKEENELPVKGV 2bdtA 153 :SHLQPTNLNDIVKNLKTNPRFIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=1744 Number of alignments=475 # 2bdtA read from 2bdtA/merged-a2m # found chain 2bdtA in template set Warning: unaligning (T0309)E63 because last residue in template chain is (2bdtA)C176 T0309 40 :SEFNGKNVSITVKEENELPVKGV 2bdtA 153 :SHLQPTNLNDIVKNLKTNPRFIF Number of specific fragments extracted= 1 number of extra gaps= 0 total=1745 Number of alignments=476 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tf7A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1tf7A/merged-a2m # 1tf7A read from 1tf7A/merged-a2m # found chain 1tf7A in template set Warning: unaligning (T0309)I49 because last residue in template chain is (1tf7A)I497 T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVS 1tf7A 462 :WHDKAIREFMISDKGPDIKDSFRNFERIISGSPTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=1746 Number of alignments=477 # 1tf7A read from 1tf7A/merged-a2m # found chain 1tf7A in template set Warning: unaligning (T0309)I49 because last residue in template chain is (1tf7A)I497 T0309 16 :DMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVS 1tf7A 464 :DKAIREFMISDKGPDIKDSFRNFERIISGSPTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=1747 Number of alignments=478 # 1tf7A read from 1tf7A/merged-a2m # found chain 1tf7A in template set Warning: unaligning (T0309)G66 because of BadResidue code BAD_PEPTIDE in next template residue (1tf7A)W92 Warning: unaligning (T0309)D67 because of BadResidue code BAD_PEPTIDE at template residue (1tf7A)W92 T0309 11 :VKGFFDMD 1tf7A 25 :IEGFDDIS T0309 19 :VMEVTEQTKEAEYTYDF 1tf7A 43 :LVSGTSGTGKTLFSIQF T0309 36 :KEILSEFNGKNVSITVKEENELPVKGVEMA 1tf7A 61 :YNGIIEFDEPGVFVTFEETPQDIIKNARSF T0309 68 :PLEHHHHHH 1tf7A 93 :DLAKLVDEG Number of specific fragments extracted= 4 number of extra gaps= 1 total=1751 Number of alignments=479 # 1tf7A read from 1tf7A/merged-a2m # found chain 1tf7A in template set Warning: unaligning (T0309)G66 because of BadResidue code BAD_PEPTIDE in next template residue (1tf7A)W92 Warning: unaligning (T0309)D67 because of BadResidue code BAD_PEPTIDE at template residue (1tf7A)W92 T0309 11 :VKGFFDMD 1tf7A 25 :IEGFDDIS T0309 19 :VMEVTEQTKEAEYTYDFK 1tf7A 43 :LVSGTSGTGKTLFSIQFL T0309 37 :EILSEFNGKNVSITVKEENELPVKGVEMA 1tf7A 62 :NGIIEFDEPGVFVTFEETPQDIIKNARSF T0309 68 :PLEHHH 1tf7A 93 :DLAKLV Number of specific fragments extracted= 4 number of extra gaps= 1 total=1755 Number of alignments=480 # 1tf7A read from 1tf7A/merged-a2m # found chain 1tf7A in template set Warning: unaligning (T0309)I49 because last residue in template chain is (1tf7A)I497 T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVS 1tf7A 462 :WHDKAIREFMISDKGPDIKDSFRNFERIISGSPTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=1756 Number of alignments=481 # 1tf7A read from 1tf7A/merged-a2m # found chain 1tf7A in template set Warning: unaligning (T0309)I49 because last residue in template chain is (1tf7A)I497 T0309 15 :FDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVS 1tf7A 463 :HDKAIREFMISDKGPDIKDSFRNFERIISGSPTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=1757 Number of alignments=482 # 1tf7A read from 1tf7A/merged-a2m # found chain 1tf7A in template set Warning: unaligning (T0309)G66 because of BadResidue code BAD_PEPTIDE in next template residue (1tf7A)W92 Warning: unaligning (T0309)D67 because of BadResidue code BAD_PEPTIDE at template residue (1tf7A)W92 T0309 11 :VKGFFDMD 1tf7A 25 :IEGFDDIS T0309 19 :VMEVTEQTKEAEYTYDF 1tf7A 43 :LVSGTSGTGKTLFSIQF T0309 36 :KEILSEFNGKNVSITVKEENELPVKGVEMA 1tf7A 61 :YNGIIEFDEPGVFVTFEETPQDIIKNARSF T0309 68 :PLEHHHHHH 1tf7A 93 :DLAKLVDEG Number of specific fragments extracted= 4 number of extra gaps= 1 total=1761 Number of alignments=483 # 1tf7A read from 1tf7A/merged-a2m # found chain 1tf7A in template set Warning: unaligning (T0309)G66 because of BadResidue code BAD_PEPTIDE in next template residue (1tf7A)W92 Warning: unaligning (T0309)D67 because of BadResidue code BAD_PEPTIDE at template residue (1tf7A)W92 T0309 11 :VKGFFDMD 1tf7A 25 :IEGFDDIS T0309 19 :VMEVTEQTKEAEYTYDFK 1tf7A 43 :LVSGTSGTGKTLFSIQFL T0309 37 :EILSEFNGKNVSITVKEENELPVKGVEMA 1tf7A 62 :NGIIEFDEPGVFVTFEETPQDIIKNARSF T0309 68 :PLEHHH 1tf7A 93 :DLAKLV Number of specific fragments extracted= 4 number of extra gaps= 1 total=1765 Number of alignments=484 # 1tf7A read from 1tf7A/merged-a2m # found chain 1tf7A in template set Warning: unaligning (T0309)I49 because last residue in template chain is (1tf7A)I497 T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVS 1tf7A 462 :WHDKAIREFMISDKGPDIKDSFRNFERIISGSPTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=1766 Number of alignments=485 # 1tf7A read from 1tf7A/merged-a2m # found chain 1tf7A in template set Warning: unaligning (T0309)I49 because last residue in template chain is (1tf7A)I497 T0309 15 :FDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVS 1tf7A 463 :HDKAIREFMISDKGPDIKDSFRNFERIISGSPTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=1767 Number of alignments=486 # 1tf7A read from 1tf7A/merged-a2m # found chain 1tf7A in template set Warning: unaligning (T0309)G66 because of BadResidue code BAD_PEPTIDE in next template residue (1tf7A)W92 Warning: unaligning (T0309)D67 because of BadResidue code BAD_PEPTIDE at template residue (1tf7A)W92 T0309 11 :VKGFFDMD 1tf7A 25 :IEGFDDIS T0309 19 :VMEVTEQTKEAEYTYDF 1tf7A 43 :LVSGTSGTGKTLFSIQF T0309 36 :KEILSEFNGKNVSITVKEENELPVKGVEMA 1tf7A 61 :YNGIIEFDEPGVFVTFEETPQDIIKNARSF T0309 68 :PLEHHHHHH 1tf7A 93 :DLAKLVDEG Number of specific fragments extracted= 4 number of extra gaps= 1 total=1771 Number of alignments=487 # 1tf7A read from 1tf7A/merged-a2m # found chain 1tf7A in template set Warning: unaligning (T0309)G66 because of BadResidue code BAD_PEPTIDE in next template residue (1tf7A)W92 Warning: unaligning (T0309)D67 because of BadResidue code BAD_PEPTIDE at template residue (1tf7A)W92 T0309 11 :VKGFFDMD 1tf7A 25 :IEGFDDIS T0309 19 :VMEVTEQTKEAEYTYDFK 1tf7A 43 :LVSGTSGTGKTLFSIQFL T0309 37 :EILSEFNGKNVSITVKEENELPVKGVEMA 1tf7A 62 :NGIIEFDEPGVFVTFEETPQDIIKNARSF T0309 68 :PLEHHH 1tf7A 93 :DLAKLV Number of specific fragments extracted= 4 number of extra gaps= 1 total=1775 Number of alignments=488 # 1tf7A read from 1tf7A/merged-a2m # found chain 1tf7A in template set Warning: unaligning (T0309)I49 because last residue in template chain is (1tf7A)I497 T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVS 1tf7A 462 :WHDKAIREFMISDKGPDIKDSFRNFERIISGSPTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=1776 Number of alignments=489 # 1tf7A read from 1tf7A/merged-a2m # found chain 1tf7A in template set Warning: unaligning (T0309)I49 because last residue in template chain is (1tf7A)I497 T0309 15 :FDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVS 1tf7A 463 :HDKAIREFMISDKGPDIKDSFRNFERIISGSPTR Number of specific fragments extracted= 1 number of extra gaps= 0 total=1777 Number of alignments=490 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pe0A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1pe0A/merged-a2m # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSE 1pe0A 3 :SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGK T0309 42 :FNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1pe0A 118 :GFGSKVTTHPLARDKMMNGGHYTYSENRVEKDGLI Number of specific fragments extracted= 2 number of extra gaps= 0 total=1779 Number of alignments=491 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDF 1pe0A 3 :SKRALVILAKGAEEMETVIPVDVMRRAGIKVTV T0309 36 :KEILSEFNGKNVSITVKEENEL 1pe0A 41 :KDPVQCSRDVVICPDASLEDAK T0309 58 :PVKGVEMAGDP 1pe0A 66 :PYDVVVLPGGN T0309 69 :LEHHHHHH 1pe0A 169 :VEALNGKE Number of specific fragments extracted= 4 number of extra gaps= 0 total=1783 Number of alignments=492 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDF 1pe0A 3 :SKRALVILAKGAEEMETVIPVDVMRRAGIKVTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=1784 Number of alignments=493 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKE 1pe0A 3 :SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAG Number of specific fragments extracted= 1 number of extra gaps= 0 total=1785 Number of alignments=494 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 38 :ILSEFNGKNVSITVKEENEL 1pe0A 168 :IVEALNGKEVAAQVKAPLVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1786 Number of alignments=495 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 37 :EILSEFNGKNVSITVKEEN 1pe0A 167 :AIVEALNGKEVAAQVKAPL T0309 65 :AG 1pe0A 186 :VL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1788 Number of alignments=496 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 3 :SKKVHQINVKGFFDMDVM 1pe0A 3 :SKRALVILAKGAEEMETV T0309 21 :EVTEQTKEAE 1pe0A 87 :AVKEILKEQE T0309 31 :YTYDFKE 1pe0A 139 :YTYSENR T0309 38 :ILSEFNGKNVSITVKEENEL 1pe0A 168 :IVEALNGKEVAAQVKAPLVL Number of specific fragments extracted= 4 number of extra gaps= 0 total=1792 Number of alignments=497 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 3 :SKKVHQINVKGFFDM 1pe0A 3 :SKRALVILAKGAEEM T0309 18 :DVM 1pe0A 24 :DVM T0309 22 :VTEQTKEAEYTY 1pe0A 58 :LEDAKKEGPYDV T0309 35 :FKEILSEFNGKNVSITV 1pe0A 88 :VKEILKEQENRKGLIAA T0309 53 :EENEL 1pe0A 142 :SENRV T0309 59 :VKGVEMAG 1pe0A 172 :LNGKEVAA Number of specific fragments extracted= 6 number of extra gaps= 0 total=1798 Number of alignments=498 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 3 :SKKV 1pe0A 3 :SKRA T0309 8 :QINVKGFFDMDVMEVTEQT 1pe0A 32 :KVTVAGLAGKDPVQCSRDV T0309 27 :KEAEY 1pe0A 63 :KEGPY T0309 35 :FKEILSE 1pe0A 88 :VKEILKE T0309 42 :FNGKNVSITVKEENE 1pe0A 134 :MNGGHYTYSENRVEK T0309 60 :KG 1pe0A 149 :DG T0309 62 :VEMAG 1pe0A 183 :APLVL Number of specific fragments extracted= 7 number of extra gaps= 0 total=1805 Number of alignments=499 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 T0309 3 :SKKVH 1pe0A 3 :SKRAL T0309 8 :QINVKGFFDMDVMEVTEQT 1pe0A 32 :KVTVAGLAGKDPVQCSRDV T0309 27 :KEAEYT 1pe0A 63 :KEGPYD T0309 35 :FKEILSE 1pe0A 88 :VKEILKE T0309 43 :NGKNVS 1pe0A 119 :FGSKVT T0309 50 :TVKEENELPVKGVEMAGDP 1pe0A 140 :TYSENRVEKDGLILTSRGP Number of specific fragments extracted= 6 number of extra gaps= 0 total=1811 Number of alignments=500 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 38 :ILSEFNGKNVSITVKEENEL 1pe0A 168 :IVEALNGKEVAAQVKAPLVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1812 Number of alignments=501 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 37 :EILSEFNGKNVSITVKEEN 1pe0A 167 :AIVEALNGKEVAAQVKAPL T0309 65 :AG 1pe0A 186 :VL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1814 Number of alignments=502 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 63 :EMAG 1pe0A 184 :PLVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1815 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 T0309 3 :SKKVHQINVKGFFDMDVM 1pe0A 3 :SKRALVILAKGAEEMETV T0309 34 :DFKEILSEFNGKNVSITVKEENELP 1pe0A 21 :IPVDVMRRAGIKVTVAGLAGKDPVQ T0309 64 :MAGD 1pe0A 46 :CSRD Number of specific fragments extracted= 3 number of extra gaps= 0 total=1818 Number of alignments=503 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 3 :SKKVHQINVKGFFDMDVM 1pe0A 3 :SKRALVILAKGAEEMETV T0309 21 :EVTEQTKEAE 1pe0A 87 :AVKEILKEQE T0309 31 :YTYDFKE 1pe0A 139 :YTYSENR T0309 38 :ILSEFNGKNVSITVKEENEL 1pe0A 168 :IVEALNGKEVAAQVKAPLVL Number of specific fragments extracted= 4 number of extra gaps= 0 total=1822 Number of alignments=504 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 3 :SKKVHQINVKGFFDM 1pe0A 3 :SKRALVILAKGAEEM T0309 18 :DVM 1pe0A 24 :DVM T0309 22 :VTEQTKEAEYTY 1pe0A 58 :LEDAKKEGPYDV T0309 35 :FKEILSEFNGKNVSITV 1pe0A 88 :VKEILKEQENRKGLIAA T0309 53 :EENEL 1pe0A 142 :SENRV T0309 59 :VKGVEMAG 1pe0A 172 :LNGKEVAA Number of specific fragments extracted= 6 number of extra gaps= 0 total=1828 Number of alignments=505 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 3 :SKKV 1pe0A 3 :SKRA T0309 8 :QINVKGFFDMDVMEVTEQT 1pe0A 32 :KVTVAGLAGKDPVQCSRDV T0309 27 :KEAEY 1pe0A 63 :KEGPY T0309 35 :FKEILSE 1pe0A 88 :VKEILKE T0309 42 :FNGKNVSITVKEENE 1pe0A 134 :MNGGHYTYSENRVEK T0309 60 :KG 1pe0A 149 :DG T0309 62 :VEMAG 1pe0A 183 :APLVL Number of specific fragments extracted= 7 number of extra gaps= 0 total=1835 Number of alignments=506 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 T0309 3 :SKKVH 1pe0A 3 :SKRAL T0309 8 :QINVKGFFDMDVMEVTEQT 1pe0A 32 :KVTVAGLAGKDPVQCSRDV T0309 27 :KEAEYT 1pe0A 63 :KEGPYD T0309 35 :FKEILSE 1pe0A 88 :VKEILKE T0309 43 :NGKNVS 1pe0A 119 :FGSKVT T0309 50 :TVKEENELPVKGVEMAGDP 1pe0A 140 :TYSENRVEKDGLILTSRGP Number of specific fragments extracted= 6 number of extra gaps= 0 total=1841 Number of alignments=507 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 38 :ILSEFNGKNVSITVKEENEL 1pe0A 168 :IVEALNGKEVAAQVKAPLVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1842 Number of alignments=508 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 37 :EILSEFNGKNVSITVKEEN 1pe0A 167 :AIVEALNGKEVAAQVKAPL T0309 65 :AG 1pe0A 186 :VL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1844 Number of alignments=509 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 63 :EMAG 1pe0A 184 :PLVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1845 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 T0309 3 :SKKVHQINVKGFFDMDVM 1pe0A 3 :SKRALVILAKGAEEMETV T0309 34 :DFKEILSEFNGKNVSITVKEENELP 1pe0A 21 :IPVDVMRRAGIKVTVAGLAGKDPVQ T0309 64 :MAGD 1pe0A 46 :CSRD Number of specific fragments extracted= 3 number of extra gaps= 0 total=1848 Number of alignments=510 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 3 :SKKVHQINVKGFFDMDVM 1pe0A 3 :SKRALVILAKGAEEMETV T0309 21 :EVTEQTKEAE 1pe0A 87 :AVKEILKEQE T0309 31 :YTYDFKE 1pe0A 139 :YTYSENR T0309 38 :ILSEFNGKNVSITVKEENEL 1pe0A 168 :IVEALNGKEVAAQVKAPLVL Number of specific fragments extracted= 4 number of extra gaps= 0 total=1852 Number of alignments=511 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 3 :SKKVHQINVKGFFDM 1pe0A 3 :SKRALVILAKGAEEM T0309 18 :DVM 1pe0A 24 :DVM T0309 22 :VTEQTKEAEYTY 1pe0A 58 :LEDAKKEGPYDV T0309 35 :FKEILSEFNGKNVSITV 1pe0A 88 :VKEILKEQENRKGLIAA T0309 53 :EENEL 1pe0A 142 :SENRV T0309 59 :VKGVEMAG 1pe0A 172 :LNGKEVAA Number of specific fragments extracted= 6 number of extra gaps= 0 total=1858 Number of alignments=512 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 3 :SKKV 1pe0A 3 :SKRA T0309 8 :QINVKGFFDMDVMEVTEQT 1pe0A 32 :KVTVAGLAGKDPVQCSRDV T0309 27 :KEAEY 1pe0A 63 :KEGPY T0309 34 :D 1pe0A 68 :D T0309 35 :FKEILSE 1pe0A 88 :VKEILKE T0309 42 :FNGKNVSIT 1pe0A 134 :MNGGHYTYS T0309 54 :ENELPVKG 1pe0A 143 :ENRVEKDG T0309 62 :VEMAG 1pe0A 183 :APLVL Number of specific fragments extracted= 8 number of extra gaps= 0 total=1866 Number of alignments=513 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 3 :SKKVH 1pe0A 3 :SKRAL T0309 8 :QINVKGFFDMDVMEVTEQT 1pe0A 32 :KVTVAGLAGKDPVQCSRDV T0309 27 :KEAEYT 1pe0A 63 :KEGPYD T0309 35 :FKEILSE 1pe0A 88 :VKEILKE T0309 43 :NGKNVS 1pe0A 135 :NGGHYT T0309 51 :VKEENELPVKGV 1pe0A 141 :YSENRVEKDGLI T0309 63 :EMAG 1pe0A 184 :PLVL Number of specific fragments extracted= 7 number of extra gaps= 0 total=1873 Number of alignments=514 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 38 :ILSEFNGKNVSITVKEENEL 1pe0A 168 :IVEALNGKEVAAQVKAPLVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1874 Number of alignments=515 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 37 :EILSEFNGKNVSITVKEEN 1pe0A 167 :AIVEALNGKEVAAQVKAPL T0309 65 :AG 1pe0A 186 :VL Number of specific fragments extracted= 2 number of extra gaps= 0 total=1876 Number of alignments=516 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)D67 because last residue in template chain is (1pe0A)K188 T0309 63 :EMAG 1pe0A 184 :PLVL Number of specific fragments extracted= 1 number of extra gaps= 0 total=1877 # 1pe0A read from 1pe0A/merged-a2m # found chain 1pe0A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1pe0A)A2 T0309 3 :SKKVHQINVKGFFDMDVM 1pe0A 3 :SKRALVILAKGAEEMETV T0309 34 :DFKEILSEFNGKNVSITVKEENEL 1pe0A 21 :IPVDVMRRAGIKVTVAGLAGKDPV T0309 63 :EMAGD 1pe0A 45 :QCSRD Number of specific fragments extracted= 3 number of extra gaps= 0 total=1880 Number of alignments=517 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1d2oA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1d2oA/merged-a2m # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 1 :MASK 1d2oA 535 :ETTS T0309 5 :KVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENEL 1d2oA 555 :RPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVK T0309 58 :PVKGVE 1d2oA 697 :KVKGYT T0309 64 :MAGDPLEHHHHHH 1d2oA 709 :DMGNLITTNKYTP Number of specific fragments extracted= 4 number of extra gaps= 0 total=1884 Number of alignments=518 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1d2oA 558 :KVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1885 Number of alignments=519 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1d2oA)E535 T0309 3 :SKKV 1d2oA 536 :TTSS T0309 7 :HQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 1d2oA 557 :EKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTE T0309 54 :ENELPVKGVEMAGDPLEHHHHHH 1d2oA 619 :TNKYTPGETSATVTKNWDDNNNQ Number of specific fragments extracted= 3 number of extra gaps= 0 total=1888 Number of alignments=520 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set Warning: unaligning (T0309)H75 because last residue in template chain is (1d2oA)P721 T0309 4 :KKV 1d2oA 537 :TSS T0309 7 :HQINVKGFFDMDVMEVTEQT 1d2oA 557 :EKVSVNLLANGEKVKTLDVT T0309 27 :KEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDP 1d2oA 668 :ESNNWTHTWTGLDEKAKGQQVKYTVEELTKVKGYTTHVDNND T0309 69 :LEHHHH 1d2oA 715 :TTNKYT Number of specific fragments extracted= 4 number of extra gaps= 0 total=1892 Number of alignments=521 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 16 :DMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPL 1d2oA 657 :GKATGKTAILNESNNWTHTWTGLDEKAKGQQVKYTVEELTKVKGYTTHVDNNDM Number of specific fragments extracted= 1 number of extra gaps= 0 total=1893 Number of alignments=522 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 22 :VTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGD 1d2oA 663 :TAILNESNNWTHTWTGLDEKAKGQQVKYTVEELTKVKGYTTHVDNN Number of specific fragments extracted= 1 number of extra gaps= 0 total=1894 Number of alignments=523 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set Warning: unaligning (T0309)H75 because last residue in template chain is (1d2oA)P721 T0309 1 :MASKKVHQINVKGFF 1d2oA 619 :TNKYTPGETSATVTK T0309 16 :DMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 1d2oA 657 :GKATGKTAILNESNNWTHTWTGLDEKAKGQQVKYTVEE T0309 54 :ENELPVKGVEMAGDPLEHHHH 1d2oA 700 :GYTTHVDNNDMGNLITTNKYT Number of specific fragments extracted= 3 number of extra gaps= 0 total=1897 Number of alignments=524 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set Warning: unaligning (T0309)H75 because last residue in template chain is (1d2oA)P721 T0309 4 :KKVHQINVKGFFDMDVMEVTEQ 1d2oA 554 :KRPEKVSVNLLANGEKVKTLDV T0309 26 :TKEAEYTYDFKEILSEFNGKNVSITVKEEN 1d2oA 667 :NESNNWTHTWTGLDEKAKGQQVKYTVEELT T0309 56 :ELPVKGVEMAGDPLEHHHH 1d2oA 702 :TTHVDNNDMGNLITTNKYT Number of specific fragments extracted= 3 number of extra gaps= 0 total=1900 Number of alignments=525 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 9 :INVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1d2oA 559 :VSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1901 Number of alignments=526 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKE 1d2oA 558 :KVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTE T0309 57 :LPVKGVEMAGDP 1d2oA 604 :DHVKDYTTDING Number of specific fragments extracted= 2 number of extra gaps= 0 total=1903 Number of alignments=527 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENEL 1d2oA 551 :QDGKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVK T0309 61 :GVEMAGDPLEHHHHHH 1d2oA 608 :DYTTDINGTTITNKYT Number of specific fragments extracted= 2 number of extra gaps= 0 total=1905 Number of alignments=528 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 1 :MA 1d2oA 536 :TT T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENEL 1d2oA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVK T0309 61 :GVEMAGDPLEHHHHH 1d2oA 608 :DYTTDINGTTITNKY Number of specific fragments extracted= 3 number of extra gaps= 0 total=1908 Number of alignments=529 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 9 :INVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1d2oA 559 :VSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1909 Number of alignments=530 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENEL 1d2oA 558 :KVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVK T0309 61 :GVEMAGDP 1d2oA 608 :DYTTDING Number of specific fragments extracted= 2 number of extra gaps= 0 total=1911 Number of alignments=531 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1d2oA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTED Number of specific fragments extracted= 1 number of extra gaps= 0 total=1912 Number of alignments=532 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1d2oA 569 :KVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTED Number of specific fragments extracted= 1 number of extra gaps= 0 total=1913 Number of alignments=533 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 1 :MAS 1d2oA 535 :ETT T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1d2oA 554 :KRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDH T0309 57 :LPVKGVEMAGDPLEHHHHHH 1d2oA 606 :VKDYTTDINGTTITNKYTPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1916 Number of alignments=534 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 1 :MAS 1d2oA 535 :ETT T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELP 1d2oA 554 :KRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVKD T0309 60 :KGVEMAGDPLEHHHH 1d2oA 609 :YTTDINGTTITNKYT Number of specific fragments extracted= 3 number of extra gaps= 0 total=1919 Number of alignments=535 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 1 :MA 1d2oA 535 :ET T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNV 1d2oA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKI T0309 48 :SITVKEE 1d2oA 617 :TITNKYT T0309 55 :NELPVKGV 1d2oA 625 :GETSATVT T0309 63 :EMAGDPLEHH 1d2oA 634 :NWDDNNNQDG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1924 Number of alignments=536 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 1 :MASKKVH 1d2oA 535 :ETTSSIG T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFK 1d2oA 558 :KVSVNLLANGEKVKTLDVTSETNWKYEFK T0309 43 :NGKNV 1d2oA 593 :EGKKI T0309 48 :SITVKEE 1d2oA 617 :TITNKYT T0309 55 :NELPVKG 1d2oA 625 :GETSATV T0309 62 :VEMAGDPLEHHHHH 1d2oA 633 :KNWDDNNNQDGKRP Number of specific fragments extracted= 6 number of extra gaps= 0 total=1930 Number of alignments=537 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1d2oA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTED Number of specific fragments extracted= 1 number of extra gaps= 0 total=1931 Number of alignments=538 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 16 :DMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1d2oA 566 :NGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1932 Number of alignments=539 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 2 :ASKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITV 1d2oA 552 :DGKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=1933 Number of alignments=540 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKE 1d2oA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKD T0309 43 :NGKNVSITVKEE 1d2oA 593 :EGKKIEYTVTED T0309 58 :PVKGVE 1d2oA 605 :HVKDYT Number of specific fragments extracted= 3 number of extra gaps= 0 total=1936 Number of alignments=541 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 1 :MAS 1d2oA 535 :ETT T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1d2oA 554 :KRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDH T0309 57 :LPVKGVEMAGDPLEHHHHHH 1d2oA 606 :VKDYTTDINGTTITNKYTPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1939 Number of alignments=542 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 1 :MAS 1d2oA 535 :ETT T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELP 1d2oA 554 :KRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVKD T0309 60 :KGVEMAGDPLEHHHH 1d2oA 609 :YTTDINGTTITNKYT Number of specific fragments extracted= 3 number of extra gaps= 0 total=1942 Number of alignments=543 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 1 :MA 1d2oA 535 :ET T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNV 1d2oA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKI T0309 48 :SITVKEE 1d2oA 617 :TITNKYT T0309 55 :NELPVKGV 1d2oA 625 :GETSATVT T0309 63 :EMAGDPLEHH 1d2oA 634 :NWDDNNNQDG Number of specific fragments extracted= 5 number of extra gaps= 0 total=1947 Number of alignments=544 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 1 :MASKKVH 1d2oA 535 :ETTSSIG T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFK 1d2oA 558 :KVSVNLLANGEKVKTLDVTSETNWKYEFK T0309 43 :NGKNV 1d2oA 593 :EGKKI T0309 48 :SITVKEE 1d2oA 617 :TITNKYT T0309 55 :NELPVKG 1d2oA 625 :GETSATV T0309 62 :VEMAGDPLEHHHHH 1d2oA 633 :KNWDDNNNQDGKRP Number of specific fragments extracted= 6 number of extra gaps= 0 total=1953 Number of alignments=545 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1d2oA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTED Number of specific fragments extracted= 1 number of extra gaps= 0 total=1954 Number of alignments=546 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 16 :DMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1d2oA 566 :NGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1955 Number of alignments=547 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 2 :ASKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITV 1d2oA 552 :DGKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=1956 Number of alignments=548 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKE 1d2oA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKD T0309 43 :NGKNVSITVKEE 1d2oA 593 :EGKKIEYTVTED T0309 58 :PVKGVE 1d2oA 605 :HVKDYT Number of specific fragments extracted= 3 number of extra gaps= 0 total=1959 Number of alignments=549 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 1 :MAS 1d2oA 535 :ETT T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1d2oA 554 :KRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDH T0309 57 :LPVKGVEMAGDPLEHHHHHH 1d2oA 606 :VKDYTTDINGTTITNKYTPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=1962 Number of alignments=550 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 1 :MAS 1d2oA 535 :ETT T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELP 1d2oA 554 :KRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVKD T0309 60 :KGVEMAGDPLEHHHH 1d2oA 609 :YTTDINGTTITNKYT Number of specific fragments extracted= 3 number of extra gaps= 0 total=1965 Number of alignments=551 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 1 :MA 1d2oA 535 :ET T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1d2oA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTED T0309 58 :PVKGVE 1d2oA 605 :HVKDYT T0309 64 :MAG 1d2oA 613 :ING Number of specific fragments extracted= 4 number of extra gaps= 0 total=1969 Number of alignments=552 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 1 :MASKKVH 1d2oA 535 :ETTSSIG T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFK 1d2oA 558 :KVSVNLLANGEKVKTLDVTSETNWKYEFK T0309 43 :NGKNV 1d2oA 593 :EGKKI T0309 48 :SITVKEE 1d2oA 617 :TITNKYT T0309 55 :NELPVKG 1d2oA 625 :GETSATV T0309 62 :VEMAGDPLEHHHHH 1d2oA 633 :KNWDDNNNQDGKRP Number of specific fragments extracted= 6 number of extra gaps= 0 total=1975 Number of alignments=553 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1d2oA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTED Number of specific fragments extracted= 1 number of extra gaps= 0 total=1976 Number of alignments=554 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 16 :DMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1d2oA 566 :NGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=1977 Number of alignments=555 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 2 :ASKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITV 1d2oA 552 :DGKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=1978 Number of alignments=556 # 1d2oA read from 1d2oA/merged-a2m # found chain 1d2oA in template set T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKE 1d2oA 554 :KRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKD T0309 43 :NGKNVSITVKEE 1d2oA 593 :EGKKIEYTVTED T0309 58 :PVKGVE 1d2oA 605 :HVKDYT Number of specific fragments extracted= 3 number of extra gaps= 0 total=1981 Number of alignments=557 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zynA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1zynA/merged-a2m # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set Warning: unaligning (T0309)H73 because last residue in template chain is (1zynA)D196 T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAEYTYD 1zynA 83 :LGHEFTSLVLALLWTGGHPSKEAQSLLEQIRDID T0309 35 :FKEILSEFNGKNVSITVK 1zynA 159 :FQNEITERNVMGVPAVFV T0309 54 :ENELPVKGVEMAGDPLEHH 1zynA 177 :NGKEFGQGRMTLTEIVAKV Number of specific fragments extracted= 3 number of extra gaps= 0 total=1984 Number of alignments=558 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1zynA)D196 T0309 1 :MASKKVHQI 1zynA 1 :MLDTNMKTQ T0309 10 :NVKGFFDMDVMEVTEQTKEAEYTYD 1zynA 92 :LALLWTGGHPSKEAQSLLEQIRDID T0309 35 :FK 1zynA 121 :FE T0309 37 :EILSEFNG 1zynA 140 :NLMAVLNP T0309 46 :NVSITV 1zynA 148 :RIKHTA T0309 52 :KEENELPVK 1zynA 161 :NEITERNVM T0309 61 :GV 1zynA 184 :GR T0309 63 :EMAGDPL 1zynA 189 :TEIVAKV Number of specific fragments extracted= 8 number of extra gaps= 0 total=1992 Number of alignments=559 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 37 :EILSEFNGK 1zynA 140 :NLMAVLNPR Number of specific fragments extracted= 1 number of extra gaps= 0 total=1993 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 37 :EILSE 1zynA 38 :ELLAE Number of specific fragments extracted= 1 number of extra gaps= 0 total=1994 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 1 :MASKKVHQINVKGFFDMD 1zynA 1 :MLDTNMKTQLRAYLEKLT T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1zynA 24 :IATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVRKPSFLITNPGSQQGPRFAGS Number of specific fragments extracted= 2 number of extra gaps= 0 total=1996 Number of alignments=560 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 1 :MASKKVHQINVKGFFDM 1zynA 1 :MLDTNMKTQLRAYLEKL T0309 18 :DVMEVTEQTKEAEYTYDF 1zynA 22 :ELIATLDDSAKSAEIKEL T0309 36 :KEILSEFNGKNVSITVKEENELPVKGVE 1zynA 41 :AEIAELSDKVTFKEDNTLPVRKPSFLIT T0309 64 :MAGDPLEHH 1zynA 78 :FAGSPLGHE T0309 73 :HH 1zynA 180 :EF T0309 75 :HH 1zynA 195 :VD Number of specific fragments extracted= 6 number of extra gaps= 0 total=2002 Number of alignments=561 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLE 1zynA 24 :IATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVRKPSFLITNPGSQQG Number of specific fragments extracted= 1 number of extra gaps= 0 total=2003 Number of alignments=562 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 36 :KEILSEFNGKNV 1zynA 41 :AEIAELSDKVTF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2004 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 34 :DFKEILSEFNGKNVSITVKEENELPVK 1zynA 35 :EIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEH 1zynA 75 :GPRFAGSPLGH Number of specific fragments extracted= 2 number of extra gaps= 0 total=2006 Number of alignments=563 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 30 :EYTYDFKEILSEFNGKNVSITVKEENELPVK 1zynA 31 :AKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEH 1zynA 75 :GPRFAGSPLGH Number of specific fragments extracted= 2 number of extra gaps= 0 total=2008 Number of alignments=564 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 1 :MASKKVH 1zynA 1 :MLDTNMK T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1zynA 9 :QLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEHHHHHH 1zynA 75 :GPRFAGSPLGHEFTSL Number of specific fragments extracted= 3 number of extra gaps= 0 total=2011 Number of alignments=565 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 1 :MASKKVHQ 1zynA 1 :MLDTNMKT T0309 10 :NVKGFFD 1zynA 9 :QLRAYLE T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1zynA 18 :TKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEHHHHH 1zynA 75 :GPRFAGSPLGHEFTS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2015 Number of alignments=566 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 1 :MAS 1zynA 1 :MLD T0309 4 :KKVHQINVKGFFD 1zynA 16 :KLTKPVELIATLD T0309 24 :EQTK 1zynA 29 :DSAK T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVKG 1zynA 33 :SAEIKELLAEIAELSDKVTFKEDNTLPVRK T0309 62 :VEMAGDP 1zynA 67 :ITNPGSQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=2020 Number of alignments=567 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 1 :MAS 1zynA 1 :MLD T0309 4 :KKVHQINVKGFFDMD 1zynA 16 :KLTKPVELIATLDDS T0309 26 :T 1zynA 31 :A T0309 31 :YTYDFKEILSEFNGKNVSITVKEENELPV 1zynA 32 :KSAEIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEHHH 1zynA 74 :QGPRFAGSPLGHEF Number of specific fragments extracted= 5 number of extra gaps= 0 total=2025 Number of alignments=568 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 34 :DFKEILSEFNGKNVSITVKEENELPVK 1zynA 35 :EIKELLAEIAELSDKVTFKEDNTLPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=2026 Number of alignments=569 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 29 :AEYTYDFKEILSEFNGKNVSITVKEENELPVK 1zynA 30 :SAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEH 1zynA 75 :GPRFAGSPLGH Number of specific fragments extracted= 2 number of extra gaps= 0 total=2028 Number of alignments=570 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 25 :QTK 1zynA 30 :SAK T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVK 1zynA 33 :SAEIKELLAEIAELSDKVTFKEDNTLPVR Number of specific fragments extracted= 2 number of extra gaps= 0 total=2030 Number of alignments=571 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 9 :INVKGFFDM 1zynA 21 :VELIATLDD T0309 25 :QTK 1zynA 30 :SAK T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPV 1zynA 33 :SAEIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEH 1zynA 74 :QGPRFAGSPLGH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2034 Number of alignments=572 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 1 :MASKKVH 1zynA 1 :MLDTNMK T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1zynA 9 :QLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEHHHHHH 1zynA 75 :GPRFAGSPLGHEFTSL Number of specific fragments extracted= 3 number of extra gaps= 0 total=2037 Number of alignments=573 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 1 :MASKKVHQ 1zynA 1 :MLDTNMKT T0309 10 :NVKGFFD 1zynA 9 :QLRAYLE T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1zynA 18 :TKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEHHHHH 1zynA 75 :GPRFAGSPLGHEFTS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2041 Number of alignments=574 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 1 :MAS 1zynA 1 :MLD T0309 4 :KKVHQINVKGFFD 1zynA 16 :KLTKPVELIATLD T0309 24 :EQTK 1zynA 29 :DSAK T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVKG 1zynA 33 :SAEIKELLAEIAELSDKVTFKEDNTLPVRK T0309 62 :VEMAGDP 1zynA 67 :ITNPGSQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=2046 Number of alignments=575 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 1 :MAS 1zynA 1 :MLD T0309 4 :KKVHQINVKGFFDMD 1zynA 16 :KLTKPVELIATLDDS T0309 26 :T 1zynA 31 :A T0309 31 :YTYDFKEILSEFNGKNVSITVKEENELPV 1zynA 32 :KSAEIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEHHH 1zynA 74 :QGPRFAGSPLGHEF Number of specific fragments extracted= 5 number of extra gaps= 0 total=2051 Number of alignments=576 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 34 :DFKEILSEFNGKNVSITVKEENELPVK 1zynA 35 :EIKELLAEIAELSDKVTFKEDNTLPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=2052 Number of alignments=577 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 29 :AEYTYDFKEILSEFNGKNVSITVKEENELPVK 1zynA 30 :SAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEH 1zynA 75 :GPRFAGSPLGH Number of specific fragments extracted= 2 number of extra gaps= 0 total=2054 Number of alignments=578 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 25 :QTK 1zynA 30 :SAK T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVK 1zynA 33 :SAEIKELLAEIAELSDKVTFKEDNTLPVR Number of specific fragments extracted= 2 number of extra gaps= 0 total=2056 Number of alignments=579 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 9 :INVKGFFDM 1zynA 21 :VELIATLDD T0309 25 :QTK 1zynA 30 :SAK T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPV 1zynA 33 :SAEIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEH 1zynA 74 :QGPRFAGSPLGH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2060 Number of alignments=580 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 1 :MASKKVH 1zynA 1 :MLDTNMK T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1zynA 9 :QLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEHHHHHH 1zynA 75 :GPRFAGSPLGHEFTSL Number of specific fragments extracted= 3 number of extra gaps= 0 total=2063 Number of alignments=581 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 1 :MASKKVHQ 1zynA 1 :MLDTNMKT T0309 10 :NVKGFFD 1zynA 9 :QLRAYLE T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1zynA 18 :TKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEHHHHH 1zynA 75 :GPRFAGSPLGHEFTS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2067 Number of alignments=582 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 1 :MAS 1zynA 1 :MLD T0309 4 :KKVHQINVKGFFD 1zynA 16 :KLTKPVELIATLD T0309 28 :EAEYTYDFKEILSEFNGKNVSITVKEENELPVKG 1zynA 29 :DSAKSAEIKELLAEIAELSDKVTFKEDNTLPVRK T0309 62 :VEMAGDP 1zynA 67 :ITNPGSQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=2071 Number of alignments=583 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 1 :MAS 1zynA 1 :MLD T0309 4 :KKVHQINVKGFFDMD 1zynA 16 :KLTKPVELIATLDDS T0309 26 :T 1zynA 31 :A T0309 31 :YTYDFKEILSEFNGKNVSITVKEENELPV 1zynA 32 :KSAEIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEHHH 1zynA 74 :QGPRFAGSPLGHEF Number of specific fragments extracted= 5 number of extra gaps= 0 total=2076 Number of alignments=584 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 34 :DFKEILSEFNGKNVSITVKEENELPVK 1zynA 35 :EIKELLAEIAELSDKVTFKEDNTLPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=2077 Number of alignments=585 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 29 :AEYTYDFKEILSEFNGKNVSITVKEENELPVK 1zynA 30 :SAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEH 1zynA 75 :GPRFAGSPLGH Number of specific fragments extracted= 2 number of extra gaps= 0 total=2079 Number of alignments=586 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 29 :AEYTYDFKEILSEFNGKNVSITVKEENELPVK 1zynA 30 :SAKSAEIKELLAEIAELSDKVTFKEDNTLPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=2080 Number of alignments=587 # 1zynA read from 1zynA/merged-a2m # found chain 1zynA in template set T0309 9 :INVKGFFDM 1zynA 21 :VELIATLDD T0309 25 :QTK 1zynA 30 :SAK T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPV 1zynA 33 :SAEIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEH 1zynA 74 :QGPRFAGSPLGH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2084 Number of alignments=588 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q59A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1q59A/merged-a2m # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MASKKVHQINVKGFFD 1q59A 9 :LLALCIRDSRVHGNGT T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFN 1q59A 47 :VLRYHVLLEEIIERNSETFTETWNRFI T0309 44 :GKNVSITVKEENELPVKGVEMAGDPLE 1q59A 108 :CMHACRTLCCNQSTPYYVVDLSVRGML T0309 72 :HHHHH 1q59A 135 :EASEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=2088 Number of alignments=589 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MA 1q59A 1 :MA T0309 3 :SKKVHQINVKG 1q59A 11 :ALCIRDSRVHG T0309 14 :FF 1q59A 28 :VL T0309 16 :DMDVMEVTEQTKEAEYTYDFKEILSEF 1q59A 46 :VVLRYHVLLEEIIERNSETFTETWNRF T0309 43 :NGKN 1q59A 91 :FHRG T0309 47 :VSITVKEENELPVKGVEMAGDPLE 1q59A 111 :ACRTLCCNQSTPYYVVDLSVRGML T0309 71 :HHHHHH 1q59A 167 :HHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2095 Number of alignments=590 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFN 1q59A 47 :VLRYHVLLEEIIERNSETFTETWNRFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=2096 Number of alignments=591 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 30 :EYTYDFKEILSEFN 1q59A 60 :RNSETFTETWNRFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=2097 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQT 1q59A 24 :TLHPVLELAARETPLRLSPEDTVVLR T0309 27 :KEAEYTYDFKEILSEFNGKN 1q59A 75 :HTEHVDLDFNSVFLEIFHRG T0309 47 :VSITVKEENELP 1q59A 111 :ACRTLCCNQSTP T0309 59 :VKGVEMAGDPLEHHHHHH 1q59A 155 :EDNIPGDDDDLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2101 Number of alignments=592 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MASK 1q59A 1 :MAYS T0309 5 :KVHQINVKGFFDMD 1q59A 32 :AARETPLRLSPEDT T0309 19 :VMEVTEQTKEAEYTY 1q59A 49 :RYHVLLEEIIERNSE T0309 34 :DFKEILSEFNGKN 1q59A 82 :DFNSVFLEIFHRG T0309 47 :VS 1q59A 96 :PS T0309 49 :ITVKEENELPV 1q59A 113 :RTLCCNQSTPY T0309 60 :KGVEMAGDPLEHHHHHH 1q59A 156 :DNIPGDDDDLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2108 Number of alignments=593 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 28 :EAEYTYDFKEILSEFN 1q59A 58 :IERNSETFTETWNRFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=2109 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 35 :FKEILSEF 1q59A 65 :FTETWNRF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2110 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MASKK 1q59A 1 :MAYST T0309 6 :VHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNV 1q59A 54 :LEEIIERNSETFTETWNRFITHTEHVDLDFNSVFLEIFHRGD T0309 48 :SITVKEEN 1q59A 115 :LCCNQSTP T0309 56 :ELPVKGVEMAGDPLEHHHHHH 1q59A 152 :TLIEDNIPGDDDDLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2114 Number of alignments=594 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MASKKVH 1q59A 1 :MAYSTRE T0309 8 :QINVKGFFD 1q59A 16 :DSRVHGNGT T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNV 1q59A 65 :FTETWNRFITHTEHVDLDFNSVFLEIFHRGD T0309 48 :SITVKEENELP 1q59A 112 :CRTLCCNQSTP T0309 59 :VKGVEMAGDPLEHHHHHH 1q59A 155 :EDNIPGDDDDLEHHHHHH Number of specific fragments extracted= 5 number of extra gaps= 0 total=2119 Number of alignments=595 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 66 :GDPLEHHHHHH 1q59A 162 :DDDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2120 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 65 :AGDPLEHHHHH 1q59A 161 :DDDDLEHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2121 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 67 :DPLEHHHHHH 1q59A 163 :DDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2122 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 62 :VEMAGDPLEHHHHHH 1q59A 158 :IPGDDDDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2123 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MA 1q59A 1 :MA T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILS 1q59A 22 :NGTLHPVLELAARETPLRLSPEDTVVLRYHVLLEEIIE T0309 41 :EFNGKNVSITVKEENELPVKGVEMA 1q59A 82 :DFNSVFLEIFHRGDPSLGRALAWMA T0309 66 :GDPLEHHHHHH 1q59A 162 :DDDLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2127 Number of alignments=596 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MASKK 1q59A 1 :MAYST T0309 6 :VHQINVKG 1q59A 14 :IRDSRVHG T0309 14 :FFDMDVMEV 1q59A 28 :VLELAARET T0309 23 :TEQTKEAEYTYDFKEILS 1q59A 42 :PEDTVVLRYHVLLEEIIE T0309 41 :EFNGKNVSITVKEEN 1q59A 82 :DFNSVFLEIFHRGDP T0309 56 :ELPVKGVEMA 1q59A 127 :DLSVRGMLEA T0309 67 :DPLEHHHHHH 1q59A 163 :DDLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2134 Number of alignments=597 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MASK 1q59A 1 :MAYS T0309 6 :VH 1q59A 19 :VH T0309 11 :VKGF 1q59A 21 :GNGT T0309 16 :DMDVMEVTEQTKEAEYTYD 1q59A 25 :LHPVLELAARETPLRLSPE T0309 35 :FKEILSEFNGKN 1q59A 65 :FTETWNRFITHT T0309 48 :S 1q59A 97 :S T0309 55 :NE 1q59A 118 :NQ T0309 62 :VEMAGDPLEHHHHHH 1q59A 158 :IPGDDDDLEHHHHHH Number of specific fragments extracted= 8 number of extra gaps= 0 total=2142 Number of alignments=598 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MASK 1q59A 1 :MAYS T0309 6 :VH 1q59A 25 :LH T0309 10 :NVKGF 1q59A 33 :ARETP T0309 21 :EVTEQ 1q59A 56 :EIIER T0309 26 :TKEAEYTYDFKEILSEF 1q59A 74 :THTEHVDLDFNSVFLEI T0309 43 :NGKN 1q59A 92 :HRGD T0309 61 :GVEMAGDPLEHHHHHH 1q59A 157 :NIPGDDDDLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2149 Number of alignments=599 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 67 :DPLEHHHHHH 1q59A 163 :DDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2150 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 62 :VEMAGDPLEHHHHHH 1q59A 158 :IPGDDDDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2151 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 62 :VEMAGDPLEHHHHHH 1q59A 158 :IPGDDDDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2152 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 35 :FKEILSEFNG 1q59A 140 :LDGWIHQQGG T0309 54 :ENELP 1q59A 155 :EDNIP T0309 64 :MAGDPLEHHHHHH 1q59A 160 :GDDDDLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=2155 Number of alignments=600 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MA 1q59A 1 :MA T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILS 1q59A 22 :NGTLHPVLELAARETPLRLSPEDTVVLRYHVLLEEIIE T0309 41 :EFNGKNVSITVKEENELPVKGVEMA 1q59A 82 :DFNSVFLEIFHRGDPSLGRALAWMA T0309 66 :GDPLEHHHHHH 1q59A 162 :DDDLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2159 Number of alignments=601 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MASKK 1q59A 1 :MAYST T0309 6 :VHQINVKG 1q59A 14 :IRDSRVHG T0309 14 :FFDMDVMEV 1q59A 28 :VLELAARET T0309 23 :TEQTKEAEYTYDFKEILS 1q59A 42 :PEDTVVLRYHVLLEEIIE T0309 41 :EFNGKNVSITVKEEN 1q59A 82 :DFNSVFLEIFHRGDP T0309 56 :ELPVKGVEMA 1q59A 127 :DLSVRGMLEA T0309 67 :DPLEHHHHHH 1q59A 163 :DDLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2166 Number of alignments=602 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MASK 1q59A 1 :MAYS T0309 6 :VH 1q59A 19 :VH T0309 11 :VKGF 1q59A 21 :GNGT T0309 16 :DMDVMEVTEQTKEAEYTYD 1q59A 25 :LHPVLELAARETPLRLSPE T0309 35 :FKEILSEFNGKN 1q59A 65 :FTETWNRFITHT T0309 48 :S 1q59A 97 :S T0309 55 :NE 1q59A 118 :NQ T0309 62 :VEMAGDPLEHHHHHH 1q59A 158 :IPGDDDDLEHHHHHH Number of specific fragments extracted= 8 number of extra gaps= 0 total=2174 Number of alignments=603 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MASK 1q59A 1 :MAYS T0309 6 :VH 1q59A 25 :LH T0309 10 :NVKGF 1q59A 33 :ARETP T0309 21 :EVTEQ 1q59A 56 :EIIER T0309 26 :TKEAEYTYDFKEILSEF 1q59A 74 :THTEHVDLDFNSVFLEI T0309 43 :NGKN 1q59A 92 :HRGD T0309 61 :GVEMAGDPLEHHHHHH 1q59A 157 :NIPGDDDDLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2181 Number of alignments=604 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 67 :DPLEHHHHHH 1q59A 163 :DDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2182 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 62 :VEMAGDPLEHHHHHH 1q59A 158 :IPGDDDDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2183 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 62 :VEMAGDPLEHHHHHH 1q59A 158 :IPGDDDDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2184 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 35 :FKEILSEFNG 1q59A 140 :LDGWIHQQGG T0309 54 :ENELP 1q59A 155 :EDNIP T0309 64 :MAGDPLEHHHHHH 1q59A 160 :GDDDDLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=2187 Number of alignments=605 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MA 1q59A 1 :MA T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILS 1q59A 22 :NGTLHPVLELAARETPLRLSPEDTVVLRYHVLLEEIIE T0309 41 :EFNGKNVSITVKEENELPVKGVEMA 1q59A 82 :DFNSVFLEIFHRGDPSLGRALAWMA T0309 66 :GDPLEHHHHHH 1q59A 162 :DDDLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2191 Number of alignments=606 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MASKK 1q59A 1 :MAYST T0309 6 :VHQINVKG 1q59A 14 :IRDSRVHG T0309 14 :FFDMDVMEV 1q59A 28 :VLELAARET T0309 23 :TEQTKEAEYTYDFKEILS 1q59A 42 :PEDTVVLRYHVLLEEIIE T0309 41 :EFNGKNVSITVKEEN 1q59A 82 :DFNSVFLEIFHRGDP T0309 56 :ELPVKGVEMA 1q59A 127 :DLSVRGMLEA T0309 67 :DPLEHHHHHH 1q59A 163 :DDLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2198 Number of alignments=607 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MA 1q59A 1 :MA T0309 3 :SKKVHQINVKGFFDMDVMEVTEQ 1q59A 22 :NGTLHPVLELAARETPLRLSPED T0309 26 :TKEAEYTYDFKEILSE 1q59A 74 :THTEHVDLDFNSVFLE T0309 42 :FNGKNVS 1q59A 91 :FHRGDPS T0309 62 :VEMAGDPLEHHHHHH 1q59A 158 :IPGDDDDLEHHHHHH Number of specific fragments extracted= 5 number of extra gaps= 0 total=2203 Number of alignments=608 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 1 :MASK 1q59A 1 :MAYS T0309 6 :VH 1q59A 25 :LH T0309 10 :NVKGF 1q59A 33 :ARETP T0309 21 :EVTEQ 1q59A 56 :EIIER T0309 26 :TKEAEYTYDFKEILSEF 1q59A 74 :THTEHVDLDFNSVFLEI T0309 43 :NGKN 1q59A 92 :HRGD T0309 61 :GVEMAGDPLEHHHHHH 1q59A 157 :NIPGDDDDLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2210 Number of alignments=609 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 67 :DPLEHHHHHH 1q59A 163 :DDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2211 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 62 :VEMAGDPLEHHHHHH 1q59A 158 :IPGDDDDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2212 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 62 :VEMAGDPLEHHHHHH 1q59A 158 :IPGDDDDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2213 # 1q59A read from 1q59A/merged-a2m # found chain 1q59A in template set T0309 35 :FKEILSEFNG 1q59A 140 :LDGWIHQQGG T0309 54 :EN 1q59A 155 :ED T0309 61 :GVEMAGDPLEHHHHHH 1q59A 157 :NIPGDDDDLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=2216 Number of alignments=610 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kkdA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1kkdA/merged-a2m # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set T0309 1 :MASKKVHQI 1kkdA 7 :KAEKHVHNF T0309 17 :MDVMEVTEQTKEAE 1kkdA 16 :MMDTQLTKRVKNAA T0309 31 :YTYDFKEILSEFNGKNV 1kkdA 38 :LIYKNTKLVKKIDHAKV T0309 48 :SITVKEENELPVKGVEMAGDPLEHHHHHH 1kkdA 64 :AIHQLRSVKMEQRKLNDQANTLVDLAKTQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=2220 Number of alignments=611 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set T0309 2 :ASKKVHQI 1kkdA 8 :AEKHVHNF T0309 17 :MDVMEVTEQTKEAE 1kkdA 16 :MMDTQLTKRVKNAA T0309 31 :YTYDFKEILSEFNGKNVSI 1kkdA 38 :LIYKNTKLVKKIDHAKVRK T0309 50 :TVKEENELPVKGVEMAGDPLEHHHHHH 1kkdA 66 :HQLRSVKMEQRKLNDQANTLVDLAKTQ Number of specific fragments extracted= 4 number of extra gaps= 0 total=2224 Number of alignments=612 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set T0309 31 :YTYDFKEILSEFNGKNV 1kkdA 38 :LIYKNTKLVKKIDHAKV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2225 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set T0309 31 :YTYDFKEILSEFNGK 1kkdA 38 :LIYKNTKLVKKIDHA Number of specific fragments extracted= 1 number of extra gaps= 0 total=2226 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 62 :VEMAGD 1kkdA 86 :VDLAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=2227 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 55 :NELPVKGVEMAGD 1kkdA 79 :NDQANTLVDLAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=2228 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 2 :ASKKVHQINVKGFFDMDVMEVTEQT 1kkdA 8 :AEKHVHNFMMDTQLTKRVKNAAANV T0309 27 :KEAEYTYDFKEILSEFNG 1kkdA 34 :RETWLIYKNTKLVKKIDH T0309 45 :KNVSITVKEENELPVKGVEMAGD 1kkdA 69 :RSVKMEQRKLNDQANTLVDLAKT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2231 Number of alignments=613 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 2 :ASKKVHQINVKGFFDMDVMEVT 1kkdA 8 :AEKHVHNFMMDTQLTKRVKNAA T0309 24 :EQTKEAEYTYDFKEILSEFNG 1kkdA 31 :NVLRETWLIYKNTKLVKKIDH T0309 45 :KNVSITVKEENELPVKGVEMAGD 1kkdA 69 :RSVKMEQRKLNDQANTLVDLAKT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2234 Number of alignments=614 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1kkdA)R1 Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 4 :KKVHQINVKGFFD 1kkdA 2 :KLELTKAEKHVHN T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVS 1kkdA 16 :MMDTQLTKRVKNAAANVLRETWLIYKNTKLVK T0309 49 :ITVKEENELPVKGVEMAGD 1kkdA 73 :MEQRKLNDQANTLVDLAKT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2237 Number of alignments=615 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1kkdA)R1 Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 4 :K 1kkdA 2 :K T0309 5 :KVHQI 1kkdA 11 :HVHNF T0309 17 :MDVMEVTEQTKEAEYT 1kkdA 16 :MMDTQLTKRVKNAAAN T0309 33 :YDFKE 1kkdA 34 :RETWL T0309 41 :EFNGKN 1kkdA 39 :IYKNTK T0309 47 :V 1kkdA 46 :V T0309 52 :KEENELPVKGVEMAGD 1kkdA 76 :RKLNDQANTLVDLAKT Number of specific fragments extracted= 7 number of extra gaps= 0 total=2244 Number of alignments=616 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 62 :VEMAGD 1kkdA 86 :VDLAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=2245 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 52 :KEENELPVKGVEMAGD 1kkdA 76 :RKLNDQANTLVDLAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=2246 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 11 :VKGFFDMDVMEVTEQTKEAEYTY 1kkdA 43 :TKLVKKIDHAKVRKHQRKFLQAI T0309 42 :FNGKNVSITVKEENELPVKGVEMAGD 1kkdA 66 :HQLRSVKMEQRKLNDQANTLVDLAKT Number of specific fragments extracted= 2 number of extra gaps= 0 total=2248 Number of alignments=617 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 54 :ENELPVKGVEMAGD 1kkdA 78 :LNDQANTLVDLAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=2249 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 2 :ASKKVHQINVKGFFDMDVMEVTEQT 1kkdA 8 :AEKHVHNFMMDTQLTKRVKNAAANV T0309 27 :KEAEYTYDFKEILSEFNG 1kkdA 34 :RETWLIYKNTKLVKKIDH T0309 45 :KNVSITVKEENELPVKGVEMAGD 1kkdA 69 :RSVKMEQRKLNDQANTLVDLAKT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2252 Number of alignments=618 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 2 :ASKKVHQINVKGFFDMDVMEVT 1kkdA 8 :AEKHVHNFMMDTQLTKRVKNAA T0309 24 :EQTKEAEYTYDFKEILSEFNG 1kkdA 31 :NVLRETWLIYKNTKLVKKIDH T0309 45 :KNVSITVKEENELPVKGVEMAGD 1kkdA 69 :RSVKMEQRKLNDQANTLVDLAKT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2255 Number of alignments=619 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1kkdA)R1 Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 4 :KKVHQINVKGFFD 1kkdA 2 :KLELTKAEKHVHN T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVS 1kkdA 16 :MMDTQLTKRVKNAAANVLRETWLIYKNTKLVK T0309 49 :ITVKEENELPVKGVEMAGD 1kkdA 73 :MEQRKLNDQANTLVDLAKT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2258 Number of alignments=620 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1kkdA)R1 Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 4 :K 1kkdA 2 :K T0309 5 :KVHQI 1kkdA 11 :HVHNF T0309 17 :MDVMEVTEQTKEAEYT 1kkdA 16 :MMDTQLTKRVKNAAAN T0309 33 :YDFKE 1kkdA 34 :RETWL T0309 41 :EFNGKN 1kkdA 39 :IYKNTK T0309 47 :V 1kkdA 46 :V T0309 52 :KEENELPVKGVEMAGD 1kkdA 76 :RKLNDQANTLVDLAKT Number of specific fragments extracted= 7 number of extra gaps= 0 total=2265 Number of alignments=621 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 62 :VEMAGD 1kkdA 86 :VDLAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=2266 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 52 :KEENELPVKGVEMAGD 1kkdA 76 :RKLNDQANTLVDLAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=2267 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 11 :VKGFFDMDVMEVTEQTKEAEYTY 1kkdA 43 :TKLVKKIDHAKVRKHQRKFLQAI T0309 42 :FNGKNVSITVKEENELPVKGVEMAGD 1kkdA 66 :HQLRSVKMEQRKLNDQANTLVDLAKT Number of specific fragments extracted= 2 number of extra gaps= 0 total=2269 Number of alignments=622 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 54 :ENELPVKGVEMAGD 1kkdA 78 :LNDQANTLVDLAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=2270 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 2 :ASKKVHQINVKGFFDMDVMEVTEQT 1kkdA 8 :AEKHVHNFMMDTQLTKRVKNAAANV T0309 27 :KEAEYTYDFKEILSEFNG 1kkdA 34 :RETWLIYKNTKLVKKIDH T0309 45 :KNVSITVKEENELPVKGVEMAGD 1kkdA 69 :RSVKMEQRKLNDQANTLVDLAKT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2273 Number of alignments=623 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 2 :ASKKVHQINVKGFFDMDVMEVT 1kkdA 8 :AEKHVHNFMMDTQLTKRVKNAA T0309 24 :EQTKEAEYTYDFKEILSEFNG 1kkdA 31 :NVLRETWLIYKNTKLVKKIDH T0309 45 :KNVSITVKEENELPVKGVEMAGD 1kkdA 69 :RSVKMEQRKLNDQANTLVDLAKT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2276 Number of alignments=624 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 2 :ASKKVHQINVKGFFDMDVMEVTEQTKEAEY 1kkdA 8 :AEKHVHNFMMDTQLTKRVKNAAANVLRETW T0309 32 :TYD 1kkdA 39 :IYK T0309 42 :FNGKNVSITVKEENELPVKGVEMAGD 1kkdA 66 :HQLRSVKMEQRKLNDQANTLVDLAKT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2279 Number of alignments=625 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1kkdA)R1 Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 4 :K 1kkdA 2 :K T0309 5 :KVHQI 1kkdA 11 :HVHNF T0309 17 :MDVMEVTEQTKEAEYT 1kkdA 16 :MMDTQLTKRVKNAAAN T0309 33 :YDFKE 1kkdA 34 :RETWL T0309 41 :EFNGKN 1kkdA 39 :IYKNTK T0309 47 :V 1kkdA 46 :V T0309 52 :KEENELPVKGVEMAGD 1kkdA 76 :RKLNDQANTLVDLAKT Number of specific fragments extracted= 7 number of extra gaps= 0 total=2286 Number of alignments=626 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 62 :VEMAGD 1kkdA 86 :VDLAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=2287 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 52 :KEENELPVKGVEMAGD 1kkdA 76 :RKLNDQANTLVDLAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=2288 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 2 :ASKKVHQINVKG 1kkdA 45 :LVKKIDHAKVRK T0309 15 :FDMDVMEVTEQTKEAEYT 1kkdA 57 :HQRKFLQAIHQLRSVKME T0309 51 :VKEENELPVKGVEMAGD 1kkdA 75 :QRKLNDQANTLVDLAKT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2291 Number of alignments=627 # 1kkdA read from 1kkdA/merged-a2m # found chain 1kkdA in template set Warning: unaligning (T0309)P68 because last residue in template chain is (1kkdA)Q92 T0309 53 :EENELPVKGVEMAGD 1kkdA 77 :KLNDQANTLVDLAKT Number of specific fragments extracted= 1 number of extra gaps= 0 total=2292 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1d2pA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1d2pA expands to /projects/compbio/data/pdb/1d2p.pdb.gz 1d2pA:# T0309 read from 1d2pA/merged-a2m # 1d2pA read from 1d2pA/merged-a2m # adding 1d2pA to template set # found chain 1d2pA in template set T0309 1 :MASK 1d2pA 535 :ETTS T0309 5 :KVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENEL 1d2pA 555 :RPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVK T0309 58 :PVKGVE 1d2pA 697 :KVKGYT T0309 64 :MAGDPLEHHHHHH 1d2pA 709 :DMGNLITTNKYTP Number of specific fragments extracted= 4 number of extra gaps= 0 total=2296 Number of alignments=628 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1d2pA 558 :KVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2297 Number of alignments=629 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 1 :MASKKVHQINVKGFF 1d2pA 621 :KYTPGETSATVTKNW T0309 16 :DMDVMEVTEQTKEAEYT 1d2pA 704 :HVDNNDMGNLITTNKYT T0309 33 :YDFKEILSE 1d2pA 786 :YTVTEDHVK T0309 44 :G 1d2pA 795 :D T0309 45 :KNVSITVKEENELPVK 1d2pA 834 :TEIKVELYQDGKATGK T0309 61 :GVEMAGDPLEHHHHHH 1d2pA 887 :GYTTHVDNNDMGNLIT Number of specific fragments extracted= 6 number of extra gaps= 0 total=2303 Number of alignments=630 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 1 :MASKKVHQINVKG 1d2pA 536 :TTSSIGEKVWDDK T0309 14 :FF 1d2pA 634 :NW T0309 16 :DMDVMEVTEQTK 1d2pA 704 :HVDNNDMGNLIT T0309 28 :EAEYTYDFKEILSE 1d2pA 781 :GKKIEYTVTEDHVK T0309 44 :G 1d2pA 802 :G T0309 45 :KNVSITVKEENELPVK 1d2pA 834 :TEIKVELYQDGKATGK T0309 61 :GVEMAG 1d2pA 857 :NNWTHT T0309 67 :DPL 1d2pA 893 :DNN T0309 70 :EHHHHHH 1d2pA 901 :ITTNKYT Number of specific fragments extracted= 9 number of extra gaps= 0 total=2312 Number of alignments=631 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 10 :NVKGFFDMDVMEVTEQTKEAEYTYDFKEI 1d2pA 854 :NESNNWTHTWTGLDEKAKGQQVKYTVEEL Number of specific fragments extracted= 1 number of extra gaps= 0 total=2313 Number of alignments=632 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 29 :A 1d2pA 717 :N T0309 30 :EYTYDFKEILSE 1d2pA 783 :KIEYTVTEDHVK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2315 Number of alignments=633 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1d2pA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTED Number of specific fragments extracted= 1 number of extra gaps= 0 total=2316 Number of alignments=634 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2316 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 1 :MAS 1d2pA 535 :ETT T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1d2pA 554 :KRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDH T0309 57 :LPVKGVEMAGDPLEHHHHHH 1d2pA 606 :VKDYTTDINGTTITNKYTPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2319 Number of alignments=635 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 1 :MAS 1d2pA 535 :ETT T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELP 1d2pA 554 :KRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVKD T0309 60 :KGVEMAGDPLEHHHH 1d2pA 609 :YTTDINGTTITNKYT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2322 Number of alignments=636 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 1 :MASKKVH 1d2pA 535 :ETTSSIG T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1d2pA 558 :KVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTED T0309 58 :PVKGVEMA 1d2pA 605 :HVKDYTTD Number of specific fragments extracted= 3 number of extra gaps= 0 total=2325 Number of alignments=637 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 1 :MASKKVH 1d2pA 535 :ETTSSIG T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFK 1d2pA 558 :KVSVNLLANGEKVKTLDVTSETNWKYEFK T0309 43 :NGKNV 1d2pA 593 :EGKKI T0309 48 :SITVKEE 1d2pA 617 :TITNKYT T0309 55 :NELPVKGVEMAGDPLEHHHHHH 1d2pA 625 :GETSATVTKNWDDNNNQDGKRP Number of specific fragments extracted= 5 number of extra gaps= 0 total=2330 Number of alignments=638 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1d2pA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTED Number of specific fragments extracted= 1 number of extra gaps= 0 total=2331 Number of alignments=639 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2331 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITV 1d2pA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2332 Number of alignments=640 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEI 1d2pA 740 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDL T0309 43 :NGKNVSITVKEE 1d2pA 780 :EGKKIEYTVTED T0309 58 :PVKGVE 1d2pA 792 :HVKDYT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2335 Number of alignments=641 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 1 :MAS 1d2pA 535 :ETT T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1d2pA 554 :KRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDH T0309 57 :LPVKGVEMAGDPLEHHHHHH 1d2pA 606 :VKDYTTDINGTTITNKYTPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2338 Number of alignments=642 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 1 :MAS 1d2pA 535 :ETT T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELP 1d2pA 554 :KRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVKD T0309 60 :KGVEMAGDPLEHHHH 1d2pA 609 :YTTDINGTTITNKYT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2341 Number of alignments=643 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 1 :MASKKVH 1d2pA 535 :ETTSSIG T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1d2pA 558 :KVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTED T0309 58 :PVKGVEMA 1d2pA 605 :HVKDYTTD Number of specific fragments extracted= 3 number of extra gaps= 0 total=2344 Number of alignments=644 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 1 :MASKKVH 1d2pA 535 :ETTSSIG T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFK 1d2pA 558 :KVSVNLLANGEKVKTLDVTSETNWKYEFK T0309 43 :NGKNV 1d2pA 593 :EGKKI T0309 48 :SITVKEE 1d2pA 617 :TITNKYT T0309 55 :NELPVKGVEMAGDPLEHHHHHH 1d2pA 625 :GETSATVTKNWDDNNNQDGKRP Number of specific fragments extracted= 5 number of extra gaps= 0 total=2349 Number of alignments=645 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1d2pA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTED Number of specific fragments extracted= 1 number of extra gaps= 0 total=2350 Number of alignments=646 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2350 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITV 1d2pA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2351 Number of alignments=647 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEI 1d2pA 740 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDL T0309 43 :NGKNVSITVKEE 1d2pA 780 :EGKKIEYTVTED T0309 58 :PVKGVE 1d2pA 792 :HVKDYT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2354 Number of alignments=648 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 1 :MAS 1d2pA 535 :ETT T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEEN 1d2pA 554 :KRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDH T0309 57 :LPVKGVEMAGDPLEHHHHHH 1d2pA 606 :VKDYTTDINGTTITNKYTPG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2357 Number of alignments=649 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 1 :MAS 1d2pA 535 :ETT T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELP 1d2pA 554 :KRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVKD T0309 60 :KGVEMAGDPLEHHHH 1d2pA 609 :YTTDINGTTITNKYT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2360 Number of alignments=650 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 1 :MASKKVH 1d2pA 535 :ETTSSIG T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1d2pA 558 :KVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTED T0309 58 :PVKGVEM 1d2pA 605 :HVKDYTT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2363 Number of alignments=651 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 1 :MASKKVH 1d2pA 535 :ETTSSIG T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFK 1d2pA 558 :KVSVNLLANGEKVKTLDVTSETNWKYEFK T0309 43 :NGKNV 1d2pA 593 :EGKKI T0309 48 :SITVKEE 1d2pA 617 :TITNKYT T0309 55 :NELPVKGVEMAGDPLEHHHHH 1d2pA 625 :GETSATVTKNWDDNNNQDGKR Number of specific fragments extracted= 5 number of extra gaps= 0 total=2368 Number of alignments=652 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEE 1d2pA 553 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTED Number of specific fragments extracted= 1 number of extra gaps= 0 total=2369 Number of alignments=653 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2369 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 2 :ASKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFK 1d2pA 739 :DGKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2370 Number of alignments=654 # 1d2pA read from 1d2pA/merged-a2m # found chain 1d2pA in template set T0309 3 :SKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEI 1d2pA 740 :GKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDL T0309 43 :NGKNVSITVKEEN 1d2pA 780 :EGKKIEYTVTEDH T0309 59 :VKGVE 1d2pA 793 :VKDYT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2373 Number of alignments=655 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kxrA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kxrA expands to /projects/compbio/data/pdb/1kxr.pdb.gz 1kxrA:# T0309 read from 1kxrA/merged-a2m # 1kxrA read from 1kxrA/merged-a2m # adding 1kxrA to template set # found chain 1kxrA in template set T0309 1 :MASKKVHQINVKGFFDMDVME 1kxrA 118 :LAAIASLTLNETILHRVVPYG T0309 22 :VTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1kxrA 221 :VTEWYDLQKAPSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYS Number of specific fragments extracted= 2 number of extra gaps= 0 total=2375 Number of alignments=656 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set T0309 1 :MAS 1kxrA 33 :NAI T0309 4 :KKV 1kxrA 105 :TDI T0309 7 :HQINVKGFFDMDVME 1kxrA 141 :FQEGYAGIFHFQLWQ T0309 22 :VTE 1kxrA 180 :SAQ T0309 25 :QTKEAEYTYDF 1kxrA 217 :FTGGVTEWYDL T0309 36 :KEILSEFNGKNVSITVKEENEL 1kxrA 236 :QIILKALERGSLLGCSINISDI T0309 58 :PVKGVEMAGDPLEHHH 1kxrA 297 :PWGEVEWKGPWSDNSY T0309 74 :HHH 1kxrA 347 :KLE Number of specific fragments extracted= 8 number of extra gaps= 0 total=2383 Number of alignments=657 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set T0309 13 :GFFDMDVMEVTE 1kxrA 332 :GEFWMSFRDFIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=2384 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2384 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2384 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)I49 because last residue in template chain is (1kxrA)N352 T0309 26 :TKEAEYTYDFKEILSEFNGKNVS 1kxrA 329 :MEDGEFWMSFRDFIREFTKLEIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=2385 Number of alignments=658 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)H7 because first residue in template chain is (1kxrA)N33 T0309 8 :QINVKG 1kxrA 34 :AIKYLG T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKE 1kxrA 49 :CLQNGVLFQDDAFPPVSHSLGFKE T0309 39 :LSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1kxrA 73 :LGPNSSKTYGIKWKRPTELLSNPQFIVDGATRTDICQG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2388 Number of alignments=659 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)Q8 because first residue in template chain is (1kxrA)N33 T0309 9 :INVKG 1kxrA 35 :IKYLG T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEIL 1kxrA 49 :CLQNGVLFQDDAFPPVSHSLGFKELG T0309 41 :EFNGKNVSITVKEENELPVKGVEMAGDPL 1kxrA 75 :PNSSKTYGIKWKRPTELLSNPQFIVDGAT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2391 Number of alignments=660 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)I9 because first residue in template chain is (1kxrA)N33 T0309 10 :NVKGF 1kxrA 34 :AIKYL T0309 32 :TYDFKEILSE 1kxrA 39 :GQDYENLRAR T0309 42 :FNGKNV 1kxrA 51 :QNGVLF T0309 53 :EENELPVK 1kxrA 57 :QDDAFPPV T0309 61 :GVEMAGDPLEHHH 1kxrA 69 :GFKELGPNSSKTY Number of specific fragments extracted= 5 number of extra gaps= 0 total=2396 Number of alignments=661 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)Q8 because first residue in template chain is (1kxrA)N33 T0309 9 :IN 1kxrA 34 :AI T0309 21 :EVT 1kxrA 36 :KYL T0309 32 :TYDFKEILSEF 1kxrA 39 :GQDYENLRARC T0309 43 :NGKNV 1kxrA 52 :NGVLF T0309 53 :EENELPVKGVEMAGDPLEHHHHH 1kxrA 57 :QDDAFPPVSHSLGFKELGPNSSK Number of specific fragments extracted= 5 number of extra gaps= 0 total=2401 Number of alignments=662 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2401 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)I49 because last residue in template chain is (1kxrA)N352 T0309 26 :TKEAEYTYDFKEILSEFNGKNVS 1kxrA 329 :MEDGEFWMSFRDFIREFTKLEIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=2402 Number of alignments=663 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2402 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)E53 because last residue in template chain is (1kxrA)N352 T0309 23 :TEQTKEAEYTYDFKEILSEFN 1kxrA 326 :RVKMEDGEFWMSFRDFIREFT T0309 48 :SITVK 1kxrA 347 :KLEIC Number of specific fragments extracted= 2 number of extra gaps= 0 total=2404 Number of alignments=664 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)H7 because first residue in template chain is (1kxrA)N33 T0309 8 :QINVKG 1kxrA 34 :AIKYLG T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKE 1kxrA 49 :CLQNGVLFQDDAFPPVSHSLGFKE T0309 39 :LSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1kxrA 73 :LGPNSSKTYGIKWKRPTELLSNPQFIVDGATRTDICQG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2407 Number of alignments=665 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)Q8 because first residue in template chain is (1kxrA)N33 T0309 9 :INVKG 1kxrA 35 :IKYLG T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEIL 1kxrA 49 :CLQNGVLFQDDAFPPVSHSLGFKELG T0309 41 :EFNGKNVSITVKEENELPVKGVEMAGDPL 1kxrA 75 :PNSSKTYGIKWKRPTELLSNPQFIVDGAT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2410 Number of alignments=666 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)I9 because first residue in template chain is (1kxrA)N33 T0309 10 :NVKGF 1kxrA 34 :AIKYL T0309 32 :TYDFKEILSE 1kxrA 39 :GQDYENLRAR T0309 42 :FNGKNV 1kxrA 51 :QNGVLF T0309 53 :EENELPVK 1kxrA 57 :QDDAFPPV T0309 61 :GVEMAGDPLEHHH 1kxrA 69 :GFKELGPNSSKTY Number of specific fragments extracted= 5 number of extra gaps= 0 total=2415 Number of alignments=667 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)Q8 because first residue in template chain is (1kxrA)N33 T0309 9 :IN 1kxrA 34 :AI T0309 21 :EVT 1kxrA 36 :KYL T0309 32 :TYDFKEILSEF 1kxrA 39 :GQDYENLRARC T0309 43 :NGKNV 1kxrA 52 :NGVLF T0309 53 :EENELPVKGVEMAGDPLEHHHHH 1kxrA 57 :QDDAFPPVSHSLGFKELGPNSSK Number of specific fragments extracted= 5 number of extra gaps= 0 total=2420 Number of alignments=668 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2420 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)I49 because last residue in template chain is (1kxrA)N352 T0309 26 :TKEAEYTYDFKEILSEFNGKNVS 1kxrA 329 :MEDGEFWMSFRDFIREFTKLEIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=2421 Number of alignments=669 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2421 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)E53 because last residue in template chain is (1kxrA)N352 T0309 23 :TEQTKEAEYTYDFKEILSEFN 1kxrA 326 :RVKMEDGEFWMSFRDFIREFT T0309 48 :SITVK 1kxrA 347 :KLEIC Number of specific fragments extracted= 2 number of extra gaps= 0 total=2423 Number of alignments=670 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)H7 because first residue in template chain is (1kxrA)N33 T0309 8 :QINVKG 1kxrA 34 :AIKYLG T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKE 1kxrA 49 :CLQNGVLFQDDAFPPVSHSLGFKE T0309 39 :LSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1kxrA 73 :LGPNSSKTYGIKWKRPTELLSNPQFIVDGATRTDICQG Number of specific fragments extracted= 3 number of extra gaps= 0 total=2426 Number of alignments=671 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)Q8 because first residue in template chain is (1kxrA)N33 T0309 9 :INVKG 1kxrA 35 :IKYLG T0309 14 :FFDMDVMEVTEQTKEAEYTYDFKEIL 1kxrA 49 :CLQNGVLFQDDAFPPVSHSLGFKELG T0309 41 :EFNGKNVSITVKEENELPVKGVEMAGDPL 1kxrA 75 :PNSSKTYGIKWKRPTELLSNPQFIVDGAT Number of specific fragments extracted= 3 number of extra gaps= 0 total=2429 Number of alignments=672 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)I9 because first residue in template chain is (1kxrA)N33 T0309 10 :NVKG 1kxrA 34 :AIKY T0309 31 :YTYDFKEILSEF 1kxrA 38 :LGQDYENLRARC T0309 43 :NGKNV 1kxrA 52 :NGVLF T0309 53 :EENELPVK 1kxrA 57 :QDDAFPPV T0309 61 :GVEMAGDPLEHHHH 1kxrA 69 :GFKELGPNSSKTYG Number of specific fragments extracted= 5 number of extra gaps= 0 total=2434 Number of alignments=673 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)Q8 because first residue in template chain is (1kxrA)N33 T0309 9 :IN 1kxrA 34 :AI T0309 21 :EVT 1kxrA 36 :KYL T0309 32 :TYDFKEILSEF 1kxrA 39 :GQDYENLRARC T0309 43 :NGKNV 1kxrA 52 :NGVLF T0309 53 :EENELPVKGVEMAGDPLEHHHHH 1kxrA 57 :QDDAFPPVSHSLGFKELGPNSSK Number of specific fragments extracted= 5 number of extra gaps= 0 total=2439 Number of alignments=674 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2439 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)I49 because last residue in template chain is (1kxrA)N352 T0309 26 :TKEAEYTYDFKEILSEFNGKNVS 1kxrA 329 :MEDGEFWMSFRDFIREFTKLEIC Number of specific fragments extracted= 1 number of extra gaps= 0 total=2440 Number of alignments=675 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)M64 because last residue in template chain is (1kxrA)N352 T0309 25 :QTKEAEYTYDFKEILSEFN 1kxrA 328 :KMEDGEFWMSFRDFIREFT T0309 47 :VSIT 1kxrA 348 :LEIC Number of specific fragments extracted= 2 number of extra gaps= 0 total=2442 Number of alignments=676 # 1kxrA read from 1kxrA/merged-a2m # found chain 1kxrA in template set Warning: unaligning (T0309)E53 because last residue in template chain is (1kxrA)N352 T0309 23 :TEQTKEAEYTYDFKEILSEFN 1kxrA 326 :RVKMEDGEFWMSFRDFIREFT T0309 48 :SITVK 1kxrA 347 :KLEIC Number of specific fragments extracted= 2 number of extra gaps= 0 total=2444 Number of alignments=677 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1d1rA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1d1rA expands to /projects/compbio/data/pdb/1d1r.pdb.gz 1d1rA:# T0309 read from 1d1rA/merged-a2m # 1d1rA read from 1d1rA/merged-a2m # adding 1d1rA to template set # found chain 1d1rA in template set T0309 1 :MASKKVHQ 1d1rA 29 :KGDGVVRI T0309 9 :INVKGFFDMDVMEVTEQTKEAEYTYD 1d1rA 48 :VCLITGVDLDDAELTKLAAELKKKCG T0309 35 :FKEILSEFNG 1d1rA 78 :VKDGVIEIQG T0309 53 :EENELPVKGVEMAGDPLEHHHHHH 1d1rA 88 :DKRDLLKSLLEAKGMKVKLAGGLE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2448 Number of alignments=678 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2448 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVK 1d1rA 30 :GDGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDG T0309 61 :GVEMAGDPLEHHHHHH 1d1rA 82 :VIEIQGDKRDLLKSLL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2450 Number of alignments=679 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set T0309 1 :MAS 1d1rA 29 :KGD T0309 4 :KKVHQINVKGFFDMDVMEVTEQTK 1d1rA 33 :VVRIQRQTSGRKGKGVCLITGVDL T0309 31 :YTYDFKEILSEFNGKN 1d1rA 57 :DDAELTKLAAELKKKC T0309 47 :VSITVKEE 1d1rA 74 :CGGAVKDG T0309 61 :GVEMAGDPLEHHHHH 1d1rA 82 :VIEIQGDKRDLLKSL T0309 76 :H 1d1rA 111 :E Number of specific fragments extracted= 6 number of extra gaps= 0 total=2456 Number of alignments=680 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set T0309 33 :YDFKEILSEFNGK 1d1rA 59 :AELTKLAAELKKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=2457 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set T0309 32 :TYDFKEILSEFNGKN 1d1rA 58 :DAELTKLAAELKKKC T0309 47 :VSITVKEE 1d1rA 74 :CGGAVKDG T0309 61 :GVEMAGD 1d1rA 82 :VIEIQGD Number of specific fragments extracted= 3 number of extra gaps= 0 total=2460 Number of alignments=681 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 69 :L 1d1rA 110 :L Number of specific fragments extracted= 1 number of extra gaps= 0 total=2461 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 62 :VEMAG 1d1rA 104 :VKLAG T0309 68 :PL 1d1rA 109 :GL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2463 Number of alignments=682 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E28 because first residue in template chain is (1d1rA)K29 Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 29 :AEYTYDFKEILSEFNGKNVSIT 1d1rA 30 :GDGVVRIQRQTSGRKGKGVCLI T0309 51 :VKEENELPVKGVEMAGD 1d1rA 93 :LKSLLEAKGMKVKLAGG T0309 69 :L 1d1rA 110 :L Number of specific fragments extracted= 3 number of extra gaps= 0 total=2466 Number of alignments=683 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)K12 because first residue in template chain is (1d1rA)K29 Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 13 :G 1d1rA 30 :G T0309 15 :FDMDVMEVTEQTKEAE 1d1rA 54 :VDLDDAELTKLAAELK T0309 31 :YTYDFKEILSEFNGKNVSIT 1d1rA 74 :CGGAVKDGVIEIQGDKRDLL T0309 54 :ENELPVKG 1d1rA 94 :KSLLEAKG T0309 62 :VEMAG 1d1rA 104 :VKLAG T0309 68 :PL 1d1rA 109 :GL Number of specific fragments extracted= 6 number of extra gaps= 0 total=2472 Number of alignments=684 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)K12 because first residue in template chain is (1d1rA)K29 Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 13 :GFFDMDVMEVTEQTKEAE 1d1rA 30 :GDGVVRIQRQTSGRKGKG T0309 31 :YTYDFKEILSEFNGKNVSITVKEENELPVKG 1d1rA 57 :DDAELTKLAAELKKKCGCGGAVKDGVIEIQG T0309 62 :VEMAG 1d1rA 104 :VKLAG T0309 68 :PL 1d1rA 109 :GL Number of specific fragments extracted= 4 number of extra gaps= 0 total=2476 Number of alignments=685 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)K12 because first residue in template chain is (1d1rA)K29 Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 13 :GFFDMDVMEVTEQTKE 1d1rA 30 :GDGVVRIQRQTSGRKG T0309 29 :AEYTYD 1d1rA 52 :TGVDLD T0309 35 :FKEILSEFNGK 1d1rA 61 :LTKLAAELKKK T0309 46 :NVSITVKEEN 1d1rA 80 :DGVIEIQGDK T0309 62 :VEMA 1d1rA 104 :VKLA T0309 67 :DPL 1d1rA 108 :GGL Number of specific fragments extracted= 6 number of extra gaps= 0 total=2482 Number of alignments=686 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 69 :L 1d1rA 110 :L Number of specific fragments extracted= 1 number of extra gaps= 0 total=2483 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 61 :GVEMAG 1d1rA 103 :KVKLAG T0309 68 :PL 1d1rA 109 :GL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2485 Number of alignments=687 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 10 :NVKGFFDMDVMEVTEQTKEA 1d1rA 73 :GCGGAVKDGVIEIQGDKRDL T0309 35 :FKEIL 1d1rA 93 :LKSLL T0309 41 :EFNGKN 1d1rA 98 :EAKGMK T0309 62 :VEMAG 1d1rA 104 :VKLAG T0309 68 :PL 1d1rA 109 :GL Number of specific fragments extracted= 5 number of extra gaps= 0 total=2490 Number of alignments=688 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 14 :FFDMDVMEVTEQTKE 1d1rA 77 :AVKDGVIEIQGDKRD T0309 34 :DFKEILSEFNGK 1d1rA 92 :LLKSLLEAKGMK T0309 62 :VEMAGD 1d1rA 104 :VKLAGG T0309 69 :L 1d1rA 110 :L Number of specific fragments extracted= 4 number of extra gaps= 0 total=2494 Number of alignments=689 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E28 because first residue in template chain is (1d1rA)K29 Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 29 :AEYTYDFKEILSEFNGKNVSIT 1d1rA 30 :GDGVVRIQRQTSGRKGKGVCLI T0309 51 :VKEENELPVKGVEMAGD 1d1rA 93 :LKSLLEAKGMKVKLAGG T0309 69 :L 1d1rA 110 :L Number of specific fragments extracted= 3 number of extra gaps= 0 total=2497 Number of alignments=690 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)K12 because first residue in template chain is (1d1rA)K29 Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 13 :G 1d1rA 30 :G T0309 15 :FDMDVMEVTEQTKEAE 1d1rA 54 :VDLDDAELTKLAAELK T0309 31 :YTYDFKEILSEFNGKNVSIT 1d1rA 74 :CGGAVKDGVIEIQGDKRDLL T0309 54 :ENELPVKG 1d1rA 94 :KSLLEAKG T0309 62 :VEMAG 1d1rA 104 :VKLAG T0309 68 :PL 1d1rA 109 :GL Number of specific fragments extracted= 6 number of extra gaps= 0 total=2503 Number of alignments=691 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)K12 because first residue in template chain is (1d1rA)K29 Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 13 :GFFDMDVMEVTEQTKEAE 1d1rA 30 :GDGVVRIQRQTSGRKGKG T0309 31 :YTYDFKEILSEFNGKNVSITVKEENELPVKG 1d1rA 57 :DDAELTKLAAELKKKCGCGGAVKDGVIEIQG T0309 62 :VEMAG 1d1rA 104 :VKLAG T0309 68 :PL 1d1rA 109 :GL Number of specific fragments extracted= 4 number of extra gaps= 0 total=2507 Number of alignments=692 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)K12 because first residue in template chain is (1d1rA)K29 Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 13 :GFFDMDVMEVTEQTKE 1d1rA 30 :GDGVVRIQRQTSGRKG T0309 29 :AEYTYD 1d1rA 52 :TGVDLD T0309 35 :FKEILSEFNGK 1d1rA 61 :LTKLAAELKKK T0309 46 :NVSITVKEEN 1d1rA 80 :DGVIEIQGDK T0309 62 :VEMA 1d1rA 104 :VKLA T0309 67 :DPL 1d1rA 108 :GGL Number of specific fragments extracted= 6 number of extra gaps= 0 total=2513 Number of alignments=693 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 69 :L 1d1rA 110 :L Number of specific fragments extracted= 1 number of extra gaps= 0 total=2514 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 61 :GVEMAG 1d1rA 103 :KVKLAG T0309 68 :PL 1d1rA 109 :GL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2516 Number of alignments=694 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 10 :NVKGFFDMDVMEVTEQTKEA 1d1rA 73 :GCGGAVKDGVIEIQGDKRDL T0309 35 :FKEIL 1d1rA 93 :LKSLL T0309 41 :EFNGKN 1d1rA 98 :EAKGMK T0309 62 :VEMAG 1d1rA 104 :VKLAG T0309 68 :PL 1d1rA 109 :GL Number of specific fragments extracted= 5 number of extra gaps= 0 total=2521 Number of alignments=695 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 14 :FFDMDVMEVTEQTKE 1d1rA 77 :AVKDGVIEIQGDKRD T0309 34 :DFKEILSEFNGK 1d1rA 92 :LLKSLLEAKGMK T0309 62 :VEMAGD 1d1rA 104 :VKLAGG T0309 69 :L 1d1rA 110 :L Number of specific fragments extracted= 4 number of extra gaps= 0 total=2525 Number of alignments=696 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E28 because first residue in template chain is (1d1rA)K29 Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 29 :AEYTYDFKEILSEFNGKNVSIT 1d1rA 30 :GDGVVRIQRQTSGRKGKGVCLI T0309 51 :VKEENELPVKGVEMAGD 1d1rA 93 :LKSLLEAKGMKVKLAGG T0309 69 :L 1d1rA 110 :L Number of specific fragments extracted= 3 number of extra gaps= 0 total=2528 Number of alignments=697 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)K12 because first residue in template chain is (1d1rA)K29 Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 13 :G 1d1rA 30 :G T0309 15 :FDMDVMEVTEQTKEAE 1d1rA 54 :VDLDDAELTKLAAELK T0309 31 :YTYDFKEILSEFNGKNVSIT 1d1rA 74 :CGGAVKDGVIEIQGDKRDLL T0309 54 :ENELPVKG 1d1rA 94 :KSLLEAKG T0309 62 :VEMAG 1d1rA 104 :VKLAG T0309 68 :PL 1d1rA 109 :GL Number of specific fragments extracted= 6 number of extra gaps= 0 total=2534 Number of alignments=698 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)K12 because first residue in template chain is (1d1rA)K29 Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 13 :GFFDMDVMEVTEQTKEAEY 1d1rA 30 :GDGVVRIQRQTSGRKGKGV T0309 33 :YDFKEILSEFNGK 1d1rA 59 :AELTKLAAELKKK T0309 46 :NVSITVKEEN 1d1rA 80 :DGVIEIQGDK T0309 62 :VEMA 1d1rA 104 :VKLA T0309 67 :DPL 1d1rA 108 :GGL Number of specific fragments extracted= 5 number of extra gaps= 0 total=2539 Number of alignments=699 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)K12 because first residue in template chain is (1d1rA)K29 Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 13 :GFFDMDVMEVTEQTKE 1d1rA 30 :GDGVVRIQRQTSGRKG T0309 29 :AEYTYD 1d1rA 52 :TGVDLD T0309 35 :FKEILSEFNGK 1d1rA 61 :LTKLAAELKKK T0309 46 :NVSITVKEEN 1d1rA 80 :DGVIEIQGDK T0309 61 :G 1d1rA 101 :G T0309 62 :VEMAG 1d1rA 104 :VKLAG T0309 68 :PL 1d1rA 109 :GL Number of specific fragments extracted= 7 number of extra gaps= 0 total=2546 Number of alignments=700 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 69 :L 1d1rA 110 :L Number of specific fragments extracted= 1 number of extra gaps= 0 total=2547 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 61 :GVEMAG 1d1rA 103 :KVKLAG T0309 68 :PL 1d1rA 109 :GL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2549 Number of alignments=701 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 10 :NVKGFFDMDVMEVTEQTKEA 1d1rA 73 :GCGGAVKDGVIEIQGDKRDL T0309 35 :FKEIL 1d1rA 93 :LKSLL T0309 41 :EFNGKN 1d1rA 98 :EAKGMK T0309 62 :VEMAG 1d1rA 104 :VKLAG T0309 68 :PL 1d1rA 109 :GL Number of specific fragments extracted= 5 number of extra gaps= 0 total=2554 Number of alignments=702 # 1d1rA read from 1d1rA/merged-a2m # found chain 1d1rA in template set Warning: unaligning (T0309)E70 because last residue in template chain is (1d1rA)E111 T0309 14 :FFDMDVMEVTEQTKE 1d1rA 77 :AVKDGVIEIQGDKRD T0309 34 :DFKEILSEFNGK 1d1rA 92 :LLKSLLEAKGMK T0309 62 :VEMAGD 1d1rA 104 :VKLAGG T0309 69 :L 1d1rA 110 :L Number of specific fragments extracted= 4 number of extra gaps= 0 total=2558 Number of alignments=703 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2d1uA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 2d1uA/merged-a2m # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 2 :ASKKVHQINVKGFFDMD 2d1uA 31 :LTRGKQSNGLHGDYDVE T0309 22 :VTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEH 2d1uA 54 :LDGSGLQVKPLGNNSWTLEPAPAPKEDALTVVGDWLGDARENDLEHHHHH Number of specific fragments extracted= 2 number of extra gaps= 0 total=2560 Number of alignments=704 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 9 :IN 2d1uA 3 :VN T0309 11 :VKGFFDMDVME 2d1uA 23 :FTLSVDASLTR T0309 23 :TEQTKEAEYTYDFKE 2d1uA 34 :GKQSNGLHGDYDVES T0309 38 :ILS 2d1uA 53 :LLD T0309 41 :EFNGKNVSITVKEENELPVKGV 2d1uA 63 :PLGNNSWTLEPAPAPKEDALTV T0309 63 :EMAGDPLEHHHHHH 2d1uA 91 :DARENDLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=2566 Number of alignments=705 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 10 :NVKGFFDMD 2d1uA 39 :GLHGDYDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=2567 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2567 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :M 2d1uA 1 :A T0309 7 :HQINVKGFFDMDVME 2d1uA 19 :AHSGFTLSVDASLTR T0309 22 :VTEQTKEAEYTYDFKEILSEFN 2d1uA 54 :LDGSGLQVKPLGNNSWTLEPAP T0309 51 :VKEENELPVKGVEMAGDPLEHHHHH 2d1uA 76 :APKEDALTVVGDWLGDARENDLEHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2571 Number of alignments=706 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :M 2d1uA 1 :A T0309 9 :INVKGFFDMDVME 2d1uA 21 :SGFTLSVDASLTR T0309 23 :TEQTKEAEYTYDFKEILSE 2d1uA 34 :GKQSNGLHGDYDVESGLQQ T0309 42 :FNGKNVSITVKE 2d1uA 64 :LGNNSWTLEPAP T0309 54 :ENELPVKGVEMAGDPL 2d1uA 79 :EDALTVVGDWLGDARE T0309 70 :EHHHHHH 2d1uA 98 :EHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=2577 Number of alignments=707 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 10 :NVKGFFDMD 2d1uA 39 :GLHGDYDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=2578 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2578 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :MASKKVHQINVKGFFDMDVME 2d1uA 13 :ALNQYAAHSGFTLSVDASLTR T0309 23 :TEQTKEAEYTYDFKEILSEF 2d1uA 34 :GKQSNGLHGDYDVESGLQQL T0309 43 :NGKNVSITVKEENELPVKGVEMAGD 2d1uA 55 :DGSGLQVKPLGNNSWTLEPAPAPKE T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2582 Number of alignments=708 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :M 2d1uA 1 :A T0309 2 :ASKKV 2d1uA 6 :APGSL T0309 7 :HQINVKGFFDMDVME 2d1uA 19 :AHSGFTLSVDASLTR T0309 23 :TEQTKEAEYTYDFKEILSEF 2d1uA 34 :GKQSNGLHGDYDVESGLQQL T0309 43 :NGKNVSITVKEENELPVKGVEMA 2d1uA 55 :DGSGLQVKPLGNNSWTLEPAPAP T0309 66 :GDPLEHHHHHH 2d1uA 94 :ENDLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=2588 Number of alignments=709 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 10 :NVKGFFDMD 2d1uA 39 :GLHGDYDVE Number of specific fragments extracted= 1 number of extra gaps= 0 total=2589 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2589 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 67 :DPLEHHHHHH 2d1uA 95 :NDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2590 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 66 :GDPLEHHHHHH 2d1uA 94 :ENDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2591 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :M 2d1uA 1 :A T0309 2 :ASKKVHQINVKGFFDMDV 2d1uA 10 :LDKALNQYAAHSGFTLSV T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNG 2d1uA 31 :LTRGKQSNGLHGDYDVESGLQQLLD T0309 45 :KNVSITVKEENELPVKGVEMAGD 2d1uA 65 :GNNSWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 5 number of extra gaps= 0 total=2596 Number of alignments=710 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :M 2d1uA 1 :A T0309 2 :ASKKVHQINVKGFFDMDV 2d1uA 10 :LDKALNQYAAHSGFTLSV T0309 20 :MEVTEQTKEAEYTYDFKEILSEF 2d1uA 31 :LTRGKQSNGLHGDYDVESGLQQL T0309 43 :NGKNV 2d1uA 55 :DGSGL T0309 48 :SIT 2d1uA 68 :SWT T0309 51 :VKEENELPVKGVEMAG 2d1uA 76 :APKEDALTVVGDWLGD T0309 67 :DPLEHHHHHH 2d1uA 95 :NDLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2603 Number of alignments=711 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :MA 2d1uA 1 :AQ T0309 9 :INVK 2d1uA 3 :VNIA T0309 15 :FDMDVMEVTEQTKE 2d1uA 23 :FTLSVDASLTRGKQ T0309 29 :AEYTYDFKEILSE 2d1uA 40 :LHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2610 Number of alignments=712 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :M 2d1uA 1 :A T0309 8 :QINVKG 2d1uA 2 :QVNIAP T0309 14 :FFDMDVMEV 2d1uA 24 :TLSVDASLT T0309 23 :TEQTKEAEYTYDFKEILSE 2d1uA 34 :GKQSNGLHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2617 Number of alignments=713 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 67 :DPLEHHHHHH 2d1uA 95 :NDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2618 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 66 :GDPLEHHHHHH 2d1uA 94 :ENDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2619 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 23 :TEQTKEAEYTYDFKEILSE 2d1uA 34 :GKQSNGLHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2623 Number of alignments=714 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 24 :EQTKEAEYTYDFKEILSE 2d1uA 35 :KQSNGLHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2627 Number of alignments=715 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :M 2d1uA 1 :A T0309 2 :ASKKVHQINVKGFFDMDV 2d1uA 10 :LDKALNQYAAHSGFTLSV T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNG 2d1uA 31 :LTRGKQSNGLHGDYDVESGLQQLLD T0309 45 :KNVSITVKEENELPVKGVEMAGD 2d1uA 65 :GNNSWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 5 number of extra gaps= 0 total=2632 Number of alignments=716 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :M 2d1uA 1 :A T0309 2 :ASKKVHQINVKGFFDMDV 2d1uA 10 :LDKALNQYAAHSGFTLSV T0309 20 :MEVTEQTKEAEYTYDFKEILSEF 2d1uA 31 :LTRGKQSNGLHGDYDVESGLQQL T0309 43 :NGKNV 2d1uA 55 :DGSGL T0309 48 :SIT 2d1uA 68 :SWT T0309 51 :VKEENELPVKGVEMAG 2d1uA 76 :APKEDALTVVGDWLGD T0309 67 :DPLEHHHHHH 2d1uA 95 :NDLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2639 Number of alignments=717 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :MA 2d1uA 1 :AQ T0309 9 :INVK 2d1uA 3 :VNIA T0309 15 :FDMDVMEVTEQTKE 2d1uA 23 :FTLSVDASLTRGKQ T0309 29 :AEYTYDFKEILSE 2d1uA 40 :LHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2646 Number of alignments=718 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :M 2d1uA 1 :A T0309 8 :QINVKG 2d1uA 2 :QVNIAP T0309 14 :FFDMDVMEV 2d1uA 24 :TLSVDASLT T0309 23 :TEQTKEAEYTYDFKEILSE 2d1uA 34 :GKQSNGLHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2653 Number of alignments=719 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 67 :DPLEHHHHHH 2d1uA 95 :NDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2654 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 66 :GDPLEHHHHHH 2d1uA 94 :ENDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2655 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 23 :TEQTKEAEYTYDFKEILSE 2d1uA 34 :GKQSNGLHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2659 Number of alignments=720 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 24 :EQTKEAEYTYDFKEILSE 2d1uA 35 :KQSNGLHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2663 Number of alignments=721 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :M 2d1uA 1 :A T0309 2 :ASKKVHQINVKGFFDMDV 2d1uA 10 :LDKALNQYAAHSGFTLSV T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNG 2d1uA 31 :LTRGKQSNGLHGDYDVESGLQQLLD T0309 45 :KNVSITVKEENELPVKGVEMAGD 2d1uA 65 :GNNSWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 5 number of extra gaps= 0 total=2668 Number of alignments=722 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :M 2d1uA 1 :A T0309 2 :ASKKVHQINVKGFFDMDV 2d1uA 10 :LDKALNQYAAHSGFTLSV T0309 20 :MEVTEQTKEAEYTYDFKEILSEF 2d1uA 31 :LTRGKQSNGLHGDYDVESGLQQL T0309 43 :NGKNV 2d1uA 55 :DGSGL T0309 48 :SIT 2d1uA 68 :SWT T0309 51 :VKEENELPVKGVEMAG 2d1uA 76 :APKEDALTVVGDWLGD T0309 67 :DPLEHHHHHH 2d1uA 95 :NDLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2675 Number of alignments=723 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :MASKKVHQ 2d1uA 1 :AQVNIAPG T0309 13 :GF 2d1uA 22 :GF T0309 15 :FDMDV 2d1uA 25 :LSVDA T0309 20 :MEVTEQTKEAEYTYDFKEILSE 2d1uA 31 :LTRGKQSNGLHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2682 Number of alignments=724 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 1 :M 2d1uA 1 :A T0309 8 :QINVKG 2d1uA 2 :QVNIAP T0309 14 :FFDMDVMEV 2d1uA 24 :TLSVDASLT T0309 23 :TEQTKEAEYTYDFKEILSE 2d1uA 34 :GKQSNGLHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 7 number of extra gaps= 0 total=2689 Number of alignments=725 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 67 :DPLEHHHHHH 2d1uA 95 :NDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2690 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 66 :GDPLEHHHHHH 2d1uA 94 :ENDLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=2691 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 23 :TEQTKEAEYTYDFKEILSE 2d1uA 34 :GKQSNGLHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2695 Number of alignments=726 # 2d1uA read from 2d1uA/merged-a2m # found chain 2d1uA in template set T0309 24 :EQTKEAEYTYDFKEILSE 2d1uA 35 :KQSNGLHGDYDVESGLQQ T0309 42 :FNGKNV 2d1uA 54 :LDGSGL T0309 48 :SITVKEENELPVKGVEMAGD 2d1uA 68 :SWTLEPAPAPKEDALTVVGD T0309 68 :PLEHHHHHH 2d1uA 96 :DLEHHHHHH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2699 Number of alignments=727 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1repC/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1repC/merged-a2m # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)N10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)H56 Warning: unaligning (T0309)V11 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)H56 Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)V51 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 1 :MASK 1repC 15 :SPRI T0309 5 :KVHQI 1repC 42 :FVDQI T0309 12 :KGFFDMDVMEVTEQ 1repC 57 :DGICEIHVAKYAEI T0309 26 :TKEAEYTYDFKEILSEFNGKNVSI 1repC 73 :LTSAEASKDIRQALKSFAGKEVVF T0309 52 :KEENELPVKGVEMAG 1repC 189 :IERYQLPQSYQRMPD T0309 67 :DP 1repC 220 :TP T0309 69 :LE 1repC 227 :IE T0309 71 :H 1repC 237 :H T0309 72 :HHHHH 1repC 242 :FRDIT Number of specific fragments extracted= 9 number of extra gaps= 0 total=2708 Number of alignments=728 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set T0309 27 :KEAEYTYDFKEILSEFNGKNVS 1repC 74 :TSAEASKDIRQALKSFAGKEVV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2709 Number of alignments=729 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)N10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 Warning: unaligning (T0309)E70 because last residue in template chain is (1repC)T246 T0309 1 :MASKKVHQ 1repC 89 :FAGKEVVF T0309 11 :VKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENEL 1repC 111 :SFPWFIKPAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEI T0309 58 :PVKGVEMAGDPL 1repC 234 :QTTHIVFSFRDI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2712 Number of alignments=730 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)S3 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)H56 T0309 4 :KKVHQINVKGFFDMDVMEV 1repC 57 :DGICEIHVAKYAEIFGLTS T0309 23 :TEQTKEAEYTYDFKEILSEFNGKN 1repC 123 :SRGLYSVHINPYLIPFFIGLQNRF T0309 47 :VSI 1repC 178 :SGI T0309 50 :TVK 1repC 184 :KID T0309 53 :EENELPVKGVEMAGDPLEHHHH 1repC 200 :RMPDFRRRFLQVCVNEINSRTP Number of specific fragments extracted= 5 number of extra gaps= 0 total=2717 Number of alignments=731 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)E54 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 34 :DFKEILSEFNGKNVSI 1repC 81 :DIRQALKSFAGKEVVF T0309 55 :NELPVKGVEMAGD 1repC 111 :SFPWFIKPAHSPS Number of specific fragments extracted= 2 number of extra gaps= 0 total=2719 Number of alignments=732 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)H56 T0309 28 :EAEYTYD 1repC 57 :DGICEIH T0309 35 :FKEILSEFNGKNVSI 1repC 82 :IRQALKSFAGKEVVF Number of specific fragments extracted= 2 number of extra gaps= 0 total=2721 Number of alignments=733 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)N10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 1 :MASKKVHQ 1repC 89 :FAGKEVVF T0309 11 :VKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELP 1repC 111 :SFPWFIKPAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEIT T0309 59 :VKGVEMAGDPLEHHHHHH 1repC 178 :SGIVSLKIDWIIERYQLP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2724 Number of alignments=734 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1repC)S15 T0309 4 :KKVH 1repC 16 :PRIV T0309 8 :QINVKGFFDM 1repC 61 :EIHVAKYAEI T0309 18 :DVMEV 1repC 116 :IKPAH T0309 23 :TEQTKEAEYTYDFKEILSEFNGKNVSITVKEENE 1repC 123 :SRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKE T0309 57 :LPVKGVEMAGDPLEHHH 1repC 204 :FRRRFLQVCVNEINSRT Number of specific fragments extracted= 5 number of extra gaps= 0 total=2729 Number of alignments=735 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)Q25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)H56 Warning: unaligning (T0309)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)H56 T0309 12 :KGFFDMDVMEVTE 1repC 36 :KRMLYLFVDQIRK T0309 28 :EAEYTYDFKEILSEFN 1repC 57 :DGICEIHVAKYAEIFG Number of specific fragments extracted= 2 number of extra gaps= 0 total=2731 Number of alignments=736 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)K27 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)H56 T0309 28 :EAEYTYDFKEILSEFN 1repC 57 :DGICEIHVAKYAEIFG T0309 44 :GKN 1repC 91 :GKE Number of specific fragments extracted= 2 number of extra gaps= 0 total=2733 Number of alignments=737 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)N10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 1 :MASKKVHQ 1repC 89 :FAGKEVVF T0309 11 :VKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELP 1repC 111 :SFPWFIKPAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEIT T0309 59 :VKGVEMAGDPLEHHHHHH 1repC 178 :SGIVSLKIDWIIERYQLP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2736 Number of alignments=738 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)S3 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)H56 T0309 1 :MA 1repC 16 :PR T0309 4 :KKVHQINVKGFFDMDVMEV 1repC 57 :DGICEIHVAKYAEIFGLTS T0309 23 :TEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELP 1repC 123 :SRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEIT T0309 59 :VKGVEM 1repC 178 :SGIVSL T0309 65 :AGDPLEHHHHH 1repC 212 :CVNEINSRTPM T0309 76 :H 1repC 246 :T Number of specific fragments extracted= 6 number of extra gaps= 0 total=2742 Number of alignments=739 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)E54 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 34 :DFKEILSEFNGKNVSI 1repC 81 :DIRQALKSFAGKEVVF T0309 55 :NELPVKGVEMAGD 1repC 111 :SFPWFIKPAHSPS Number of specific fragments extracted= 2 number of extra gaps= 0 total=2744 Number of alignments=740 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set T0309 32 :TYDFKEILSEFNGKNVSI 1repC 79 :SKDIRQALKSFAGKEVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2745 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 29 :AEYTYDFKEILSEFNGKNVSI 1repC 76 :AEASKDIRQALKSFAGKEVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2746 Number of alignments=741 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1repC 74 :TSAEASKDIRQALKSFAGKEVVF T0309 64 :M 1repC 111 :S Number of specific fragments extracted= 2 number of extra gaps= 0 total=2748 Number of alignments=742 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 13 :GFFDMDVMEVTE 1repC 58 :GICEIHVAKYAE T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSI 1repC 72 :GLTSAEASKDIRQALKSFAGKEVVF T0309 64 :MAGDPLEHHHHHH 1repC 111 :SFPWFIKPAHSPS Number of specific fragments extracted= 3 number of extra gaps= 0 total=2751 Number of alignments=743 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 12 :KGFFDMDVMEVTE 1repC 57 :DGICEIHVAKYAE T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSI 1repC 72 :GLTSAEASKDIRQALKSFAGKEVVF T0309 64 :MAGDPLEHHHHH 1repC 111 :SFPWFIKPAHSP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2754 Number of alignments=744 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 7 :HQIN 1repC 16 :PRIV T0309 12 :KGFFDMDVMEVTE 1repC 57 :DGICEIHVAKYAE T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSI 1repC 72 :GLTSAEASKDIRQALKSFAGKEVVF T0309 64 :MAGDPLEHHHH 1repC 111 :SFPWFIKPAHS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2758 Number of alignments=745 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 7 :HQINV 1repC 16 :PRIVQ T0309 12 :KGFFDMDVMEVTE 1repC 57 :DGICEIHVAKYAE T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSI 1repC 72 :GLTSAEASKDIRQALKSFAGKEVVF T0309 64 :MAGDPLE 1repC 114 :WFIKPAH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2762 Number of alignments=746 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 29 :AEYTYDFKEILSEFNGKNVSI 1repC 76 :AEASKDIRQALKSFAGKEVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2763 Number of alignments=747 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1repC 74 :TSAEASKDIRQALKSFAGKEVVF T0309 64 :M 1repC 111 :S Number of specific fragments extracted= 2 number of extra gaps= 0 total=2765 Number of alignments=748 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1repC 74 :TSAEASKDIRQALKSFAGKEVVF T0309 64 :M 1repC 111 :S Number of specific fragments extracted= 2 number of extra gaps= 0 total=2767 Number of alignments=749 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1repC 74 :TSAEASKDIRQALKSFAGKEVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2768 Number of alignments=750 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 13 :GFFDMDVMEVTE 1repC 58 :GICEIHVAKYAE T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSI 1repC 72 :GLTSAEASKDIRQALKSFAGKEVVF T0309 64 :MAGDPLEHHHHHH 1repC 111 :SFPWFIKPAHSPS Number of specific fragments extracted= 3 number of extra gaps= 0 total=2771 Number of alignments=751 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 12 :KGFFDMDVMEVTE 1repC 57 :DGICEIHVAKYAE T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSI 1repC 72 :GLTSAEASKDIRQALKSFAGKEVVF T0309 64 :MAGDPLEHHHHH 1repC 111 :SFPWFIKPAHSP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2774 Number of alignments=752 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 7 :HQIN 1repC 16 :PRIV T0309 12 :KGFFDMDVMEVTE 1repC 57 :DGICEIHVAKYAE T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSI 1repC 72 :GLTSAEASKDIRQALKSFAGKEVVF T0309 64 :MAGDPLEHHHH 1repC 111 :SFPWFIKPAHS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2778 Number of alignments=753 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 7 :HQINV 1repC 16 :PRIVQ T0309 12 :KGFFDMDVMEVTE 1repC 57 :DGICEIHVAKYAE T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSI 1repC 72 :GLTSAEASKDIRQALKSFAGKEVVF T0309 64 :MAGDPLE 1repC 114 :WFIKPAH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2782 Number of alignments=754 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 29 :AEYTYDFKEILSEFNGKNVSI 1repC 76 :AEASKDIRQALKSFAGKEVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2783 Number of alignments=755 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1repC 74 :TSAEASKDIRQALKSFAGKEVVF T0309 64 :M 1repC 111 :S Number of specific fragments extracted= 2 number of extra gaps= 0 total=2785 Number of alignments=756 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1repC 74 :TSAEASKDIRQALKSFAGKEVVF T0309 64 :M 1repC 111 :S Number of specific fragments extracted= 2 number of extra gaps= 0 total=2787 Number of alignments=757 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1repC 74 :TSAEASKDIRQALKSFAGKEVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2788 Number of alignments=758 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 13 :GFFDMDVMEVTE 1repC 58 :GICEIHVAKYAE T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSI 1repC 72 :GLTSAEASKDIRQALKSFAGKEVVF T0309 64 :MAGDPLEHHHHHH 1repC 111 :SFPWFIKPAHSPS Number of specific fragments extracted= 3 number of extra gaps= 0 total=2791 Number of alignments=759 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 12 :KGFFDMDVMEVTE 1repC 57 :DGICEIHVAKYAE T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSI 1repC 72 :GLTSAEASKDIRQALKSFAGKEVVF T0309 64 :MAGDPLEHHHHH 1repC 111 :SFPWFIKPAHSP Number of specific fragments extracted= 3 number of extra gaps= 0 total=2794 Number of alignments=760 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 7 :HQI 1repC 16 :PRI T0309 12 :KGFFDMDVMEVTE 1repC 57 :DGICEIHVAKYAE T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSI 1repC 72 :GLTSAEASKDIRQALKSFAGKEVVF T0309 64 :MAGDPLEHHHH 1repC 111 :SFPWFIKPAHS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2798 Number of alignments=761 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 7 :HQINV 1repC 16 :PRIVQ T0309 12 :KGFFDMDVMEVTE 1repC 57 :DGICEIHVAKYAE T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSI 1repC 72 :GLTSAEASKDIRQALKSFAGKEVVF T0309 64 :MAGDPLE 1repC 114 :WFIKPAH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2802 Number of alignments=762 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 29 :AEYTYDFKEILSEFNGKNVSI 1repC 76 :AEASKDIRQALKSFAGKEVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2803 Number of alignments=763 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1repC 74 :TSAEASKDIRQALKSFAGKEVVF T0309 64 :M 1repC 111 :S Number of specific fragments extracted= 2 number of extra gaps= 0 total=2805 Number of alignments=764 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 26 :TKEAEYTYDFKEILSEFNGKNVSI 1repC 73 :LTSAEASKDIRQALKSFAGKEVVF T0309 64 :M 1repC 111 :S Number of specific fragments extracted= 2 number of extra gaps= 0 total=2807 Number of alignments=765 # 1repC read from 1repC/merged-a2m # found chain 1repC in template set Warning: unaligning (T0309)T50 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1repC)E110 Warning: unaligning (T0309)E63 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1repC)E110 T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1repC 74 :TSAEASKDIRQALKSFAGKEVVF Number of specific fragments extracted= 1 number of extra gaps= 0 total=2808 Number of alignments=766 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1mejA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1mejA/merged-a2m # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set T0309 1 :MASKKVHQINVKGFF 1mejA 6 :LISGTGSNLQALIDS T0309 16 :DMDVMEVTEQTKEAEYTYDFKEILSEF 1mejA 52 :PTRVINHKLYKNRVEFDSAIDLVLEEF T0309 44 :GKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1mejA 79 :SIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSL Number of specific fragments extracted= 3 number of extra gaps= 0 total=2811 Number of alignments=767 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set T0309 1 :MASKKVHQINVKGFF 1mejA 6 :LISGTGSNLQALIDS T0309 16 :DMDVMEVTEQTKEA 1mejA 27 :SAQIDIVISNKAAV T0309 30 :EYTYDFKEILSEFN 1mejA 66 :EFDSAIDLVLEEFS T0309 44 :GKNVSITVKEE 1mejA 117 :GSNAHEQALET T0309 55 :NELPVK 1mejA 163 :ATLSER T0309 61 :GVEMAGDPLEHHHHHH 1mejA 173 :EHKIFPAALQLVASGT Number of specific fragments extracted= 6 number of extra gaps= 0 total=2817 Number of alignments=768 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFN 1mejA 55 :VINHKLYKNRVEFDSAIDLVLEEFS Number of specific fragments extracted= 1 number of extra gaps= 0 total=2818 Number of alignments=769 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2818 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2818 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2818 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Warning: unaligning (T0309)V19 because first residue in template chain is (1mejA)R0 T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGV 1mejA 1 :ILVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGL T0309 63 :EMAGDPLEHHHHHH 1mejA 47 :ERAGIPTRVINHKL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2820 Number of alignments=770 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set T0309 10 :NVKGFFD 1mejA 13 :NLQALID T0309 17 :MDVMEVT 1mejA 43 :LDKAERA T0309 30 :EYTYD 1mejA 66 :EFDSA T0309 35 :FKEILS 1mejA 88 :FMRILS T0309 41 :EFNGKNVSI 1mejA 99 :KWNGKMLNI T0309 54 :ENELPVKG 1mejA 151 :QEAVPVKR Number of specific fragments extracted= 6 number of extra gaps= 0 total=2826 Number of alignments=771 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set T0309 2 :ASKKVHQINV 1mejA 23 :EPNSSAQIDI T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEILSEFN 1mejA 48 :RAGIPTRVINHKLYKNRVEFDSAIDLVLEEFS T0309 47 :VSIT 1mejA 132 :TGCT T0309 51 :VKEENELPVKG 1mejA 148 :IILQEAVPVKR T0309 63 :EMAG 1mejA 190 :QLGE Number of specific fragments extracted= 5 number of extra gaps= 0 total=2831 Number of alignments=772 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Warning: unaligning (T0309)Q8 because first residue in template chain is (1mejA)R0 T0309 9 :INVKGFFD 1mejA 1 :ILVAVLIS T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEF 1mejA 53 :TRVINHKLYKNRVEFDSAIDLVLEEF T0309 43 :NGKNVSIT 1mejA 101 :NGKMLNIH T0309 51 :VKEENELPVKG 1mejA 148 :IILQEAVPVKR T0309 62 :VEMAG 1mejA 189 :VQLGE Number of specific fragments extracted= 5 number of extra gaps= 0 total=2836 Number of alignments=773 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2836 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Warning: unaligning (T0309)M64 because last residue in template chain is (1mejA)V200 Number of specific fragments extracted= 0 number of extra gaps= 0 total=2836 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Warning: unaligning (T0309)M64 because last residue in template chain is (1mejA)V200 T0309 43 :NGKNV 1mejA 194 :NGKIC T0309 63 :E 1mejA 199 :W Number of specific fragments extracted= 2 number of extra gaps= 0 total=2838 Number of alignments=774 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set T0309 32 :TYDFKEILSEFNGKNVSITV 1mejA 117 :GSNAHEQALETGVTVTGCTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2839 Number of alignments=775 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Warning: unaligning (T0309)V19 because first residue in template chain is (1mejA)R0 T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGV 1mejA 1 :ILVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGL T0309 63 :EMAGDPLEHHHHHH 1mejA 47 :ERAGIPTRVINHKL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2841 Number of alignments=776 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set T0309 10 :NVKGFFD 1mejA 13 :NLQALID T0309 17 :MDVMEVT 1mejA 43 :LDKAERA T0309 30 :EYTYD 1mejA 66 :EFDSA T0309 35 :FKEILS 1mejA 88 :FMRILS T0309 41 :EFNGKNVSI 1mejA 99 :KWNGKMLNI T0309 54 :ENELPVKG 1mejA 151 :QEAVPVKR Number of specific fragments extracted= 6 number of extra gaps= 0 total=2847 Number of alignments=777 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set T0309 2 :ASKKVHQINV 1mejA 23 :EPNSSAQIDI T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEILSEFN 1mejA 48 :RAGIPTRVINHKLYKNRVEFDSAIDLVLEEFS T0309 47 :VSIT 1mejA 132 :TGCT T0309 51 :VKEENELPVKG 1mejA 148 :IILQEAVPVKR T0309 63 :EMAG 1mejA 190 :QLGE Number of specific fragments extracted= 5 number of extra gaps= 0 total=2852 Number of alignments=778 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Warning: unaligning (T0309)Q8 because first residue in template chain is (1mejA)R0 T0309 9 :INVKGFFD 1mejA 1 :ILVAVLIS T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEF 1mejA 53 :TRVINHKLYKNRVEFDSAIDLVLEEF T0309 43 :NGKNVSIT 1mejA 101 :NGKMLNIH T0309 51 :VKEENELPVKG 1mejA 148 :IILQEAVPVKR T0309 62 :VEMAG 1mejA 189 :VQLGE Number of specific fragments extracted= 5 number of extra gaps= 0 total=2857 Number of alignments=779 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2857 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Warning: unaligning (T0309)M64 because last residue in template chain is (1mejA)V200 Number of specific fragments extracted= 0 number of extra gaps= 0 total=2857 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Warning: unaligning (T0309)M64 because last residue in template chain is (1mejA)V200 T0309 43 :NGKNV 1mejA 194 :NGKIC T0309 63 :E 1mejA 199 :W Number of specific fragments extracted= 2 number of extra gaps= 0 total=2859 Number of alignments=780 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set T0309 32 :TYDFKEILSEFNGKNVSITV 1mejA 117 :GSNAHEQALETGVTVTGCTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2860 Number of alignments=781 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Warning: unaligning (T0309)V19 because first residue in template chain is (1mejA)R0 T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGV 1mejA 1 :ILVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGL T0309 63 :EMAGDPLEHHHHHH 1mejA 47 :ERAGIPTRVINHKL Number of specific fragments extracted= 2 number of extra gaps= 0 total=2862 Number of alignments=782 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set T0309 10 :NVKGFFD 1mejA 13 :NLQALID T0309 17 :MDVMEVT 1mejA 43 :LDKAERA T0309 30 :EYTYD 1mejA 66 :EFDSA T0309 35 :FKEILS 1mejA 88 :FMRILS T0309 41 :EFNGKNVSI 1mejA 99 :KWNGKMLNI T0309 54 :ENELPVKG 1mejA 151 :QEAVPVKR Number of specific fragments extracted= 6 number of extra gaps= 0 total=2868 Number of alignments=783 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set T0309 2 :ASKKVHQINV 1mejA 23 :EPNSSAQIDI T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEILSEFN 1mejA 48 :RAGIPTRVINHKLYKNRVEFDSAIDLVLEEFS T0309 47 :VSIT 1mejA 132 :TGCT T0309 51 :VKEENELPVKG 1mejA 148 :IILQEAVPVKR T0309 63 :EMAG 1mejA 192 :GENG Number of specific fragments extracted= 5 number of extra gaps= 0 total=2873 Number of alignments=784 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Warning: unaligning (T0309)Q8 because first residue in template chain is (1mejA)R0 T0309 9 :INVKGFFD 1mejA 1 :ILVAVLIS T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEF 1mejA 53 :TRVINHKLYKNRVEFDSAIDLVLEEF T0309 43 :NGKNVSIT 1mejA 101 :NGKMLNIH T0309 51 :VKEENELPVKG 1mejA 148 :IILQEAVPVKR T0309 62 :VEMAG 1mejA 189 :VQLGE Number of specific fragments extracted= 5 number of extra gaps= 0 total=2878 Number of alignments=785 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=2878 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Warning: unaligning (T0309)M64 because last residue in template chain is (1mejA)V200 Number of specific fragments extracted= 0 number of extra gaps= 0 total=2878 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set Warning: unaligning (T0309)M64 because last residue in template chain is (1mejA)V200 T0309 50 :TVKEENE 1mejA 190 :QLGENGK T0309 61 :GVE 1mejA 197 :ICW Number of specific fragments extracted= 2 number of extra gaps= 0 total=2880 Number of alignments=786 # 1mejA read from 1mejA/merged-a2m # found chain 1mejA in template set T0309 32 :TYDFKEILSEFNGKNVSITV 1mejA 117 :GSNAHEQALETGVTVTGCTV Number of specific fragments extracted= 1 number of extra gaps= 0 total=2881 Number of alignments=787 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hyuA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1hyuA/merged-a2m # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 2 :ASK 1hyuA 206 :ALN T0309 6 :VH 1hyuA 249 :VL T0309 8 :QINVKGFFDMD 1hyuA 255 :IENYISVPKTE T0309 19 :VMEVTEQT 1hyuA 270 :AGALKAHV T0309 27 :KE 1hyuA 288 :QS T0309 29 :AEYTYDF 1hyuA 311 :AVLKARS T0309 39 :LSEFNGK 1hyuA 334 :EDQYRTK T0309 46 :NVSITVKEENELPVKGVEMAGDPLEHHH 1hyuA 467 :MGEIIIDAKCETSVKGVFAAGDCTTVPY Number of specific fragments extracted= 8 number of extra gaps= 0 total=2889 Number of alignments=788 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 21 :EVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1hyuA 22 :ELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEHH 1hyuA 75 :GPRFAGSPLGHE Number of specific fragments extracted= 2 number of extra gaps= 0 total=2891 Number of alignments=789 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MASKKVHQI 1hyuA 250 :LDTVDIENY T0309 10 :NVKGFFDMDVMEV 1hyuA 281 :DVDVIDSQSASKL T0309 23 :TEQTKEAEYTYDFKEILSE 1hyuA 402 :SLKNVDIILNAQTTEVKGD T0309 43 :NGKNVSITVKE 1hyuA 421 :GSKVVGLEYRD T0309 54 :ENE 1hyuA 435 :GDI T0309 57 :LPVKGV 1hyuA 440 :VALAGI T0309 63 :EMAGDPLEHHHHHH 1hyuA 456 :HWLEGALERNRMGE Number of specific fragments extracted= 7 number of extra gaps= 0 total=2898 Number of alignments=790 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MASKK 1hyuA 210 :RDAYD T0309 6 :VHQINVKGFFDMDVMEV 1hyuA 277 :VSDYDVDVIDSQSASKL T0309 23 :TE 1hyuA 306 :ET T0309 26 :TKEAEYTYD 1hyuA 308 :ASGAVLKAR T0309 35 :F 1hyuA 345 :C T0309 36 :KEILSEFN 1hyuA 411 :NAQTTEVK T0309 44 :GKNVSITVKE 1hyuA 422 :SKVVGLEYRD T0309 54 :ENE 1hyuA 435 :GDI T0309 57 :LPVK 1hyuA 440 :VALA T0309 61 :GVEM 1hyuA 461 :ALER T0309 65 :AGDPLEH 1hyuA 486 :AGDCTTV T0309 72 :H 1hyuA 494 :Y T0309 73 :HHHH 1hyuA 518 :TKIA Number of specific fragments extracted= 13 number of extra gaps= 0 total=2911 Number of alignments=791 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKN 1hyuA 379 :EHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKGDG T0309 47 :VSITV 1hyuA 427 :LEYRD T0309 52 :KEENELPVKGV 1hyuA 435 :GDIHSVALAGI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2914 Number of alignments=792 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 10 :NVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKN 1hyuA 385 :EFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKGDG T0309 47 :VSITV 1hyuA 427 :LEYRD T0309 52 :KEENELPVKGV 1hyuA 435 :GDIHSVALAGI Number of specific fragments extracted= 3 number of extra gaps= 0 total=2917 Number of alignments=793 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MASKKV 1hyuA 210 :RDAYDV T0309 7 :HQINVKGFFD 1hyuA 253 :VDIENYISVP T0309 18 :DVMEVTEQTKEAEYTYDF 1hyuA 263 :KTEGQKLAGALKAHVSDY T0309 37 :EILSEFNGKNVSI 1hyuA 281 :DVDVIDSQSASKL T0309 50 :TVKEENELPVKGVEMAGDPLEHHHHHH 1hyuA 405 :NVDIILNAQTTEVKGDGSKVVGLEYRD Number of specific fragments extracted= 5 number of extra gaps= 0 total=2922 Number of alignments=794 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MASK 1hyuA 210 :RDAY T0309 5 :KVHQINVKG 1hyuA 289 :SASKLVPAA T0309 15 :FDMDVMEVTEQTK 1hyuA 298 :TEGGLHQIETASG T0309 29 :AEYTYDF 1hyuA 311 :AVLKARS T0309 41 :EFNGKNVS 1hyuA 352 :LFKGKRVA T0309 49 :I 1hyuA 381 :V T0309 50 :TVKEENELPVKGVEMAGDPLEHHHHHH 1hyuA 405 :NVDIILNAQTTEVKGDGSKVVGLEYRD Number of specific fragments extracted= 7 number of extra gaps= 0 total=2929 Number of alignments=795 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 49 :ITVKEENELPVKGVEMAGD 1hyuA 470 :IIIDAKCETSVKGVFAAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=2930 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 40 :SEFNG 1hyuA 419 :GDGSK T0309 47 :VS 1hyuA 424 :VV T0309 49 :ITVKE 1hyuA 427 :LEYRD T0309 54 :ENELPVKGV 1hyuA 437 :IHSVALAGI Number of specific fragments extracted= 4 number of extra gaps= 0 total=2934 Number of alignments=796 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 34 :DFKEILSEFNGKNVSITVKEENELPVK 1hyuA 35 :EIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEH 1hyuA 75 :GPRFAGSPLGH Number of specific fragments extracted= 2 number of extra gaps= 0 total=2936 Number of alignments=797 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 30 :EYTYDFKEILSEFNGKNVSITVKEENELPVK 1hyuA 31 :AKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEH 1hyuA 75 :GPRFAGSPLGH Number of specific fragments extracted= 2 number of extra gaps= 0 total=2938 Number of alignments=798 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MASKKVH 1hyuA 1 :MLDTNMK T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1hyuA 9 :QLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEHHHHHH 1hyuA 75 :GPRFAGSPLGHEFTSL Number of specific fragments extracted= 3 number of extra gaps= 0 total=2941 Number of alignments=799 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MASKKVHQ 1hyuA 1 :MLDTNMKT T0309 10 :NVKGFFD 1hyuA 9 :QLRAYLE T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1hyuA 18 :TKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEHHHHH 1hyuA 75 :GPRFAGSPLGHEFTS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2945 Number of alignments=800 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MA 1hyuA 1 :ML T0309 3 :SKKVHQIN 1hyuA 18 :TKPVELIA T0309 21 :EVTEQTKEA 1hyuA 26 :TLDDSAKSA T0309 34 :DFKEILSEFNGKNVSITVKEENELPVK 1hyuA 35 :EIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEHH 1hyuA 75 :GPRFAGSPLGHE Number of specific fragments extracted= 5 number of extra gaps= 0 total=2950 Number of alignments=801 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MAS 1hyuA 1 :MLD T0309 4 :K 1hyuA 19 :K T0309 8 :QINVKG 1hyuA 20 :PVELIA T0309 21 :EVTEQTKEA 1hyuA 26 :TLDDSAKSA T0309 34 :DFKEILSEFNGKNVSITVKEENELPV 1hyuA 35 :EIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEHHH 1hyuA 74 :QGPRFAGSPLGHEF Number of specific fragments extracted= 6 number of extra gaps= 0 total=2956 Number of alignments=802 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 34 :DFKEILSEFNGKNVSITVKEENELPVK 1hyuA 35 :EIKELLAEIAELSDKVTFKEDNTLPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=2957 Number of alignments=803 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 29 :AEYTYDFKEILSEFNGKNVSITVKEENELPVK 1hyuA 30 :SAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEH 1hyuA 75 :GPRFAGSPLGH Number of specific fragments extracted= 2 number of extra gaps= 0 total=2959 Number of alignments=804 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 24 :EQTKE 1hyuA 29 :DSAKS T0309 33 :YDFKEILSEFNGKNVSITVKEENELPVKG 1hyuA 34 :AEIKELLAEIAELSDKVTFKEDNTLPVRK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2961 Number of alignments=805 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 5 :KVHQI 1hyuA 20 :PVELI T0309 20 :MEVTEQTKEA 1hyuA 25 :ATLDDSAKSA T0309 34 :DFKEILSEFNGKNVSITVKEENELPV 1hyuA 35 :EIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEHH 1hyuA 74 :QGPRFAGSPLGHE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2965 Number of alignments=806 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MASKKVH 1hyuA 1 :MLDTNMK T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1hyuA 9 :QLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEHHHHHH 1hyuA 75 :GPRFAGSPLGHEFTSL Number of specific fragments extracted= 3 number of extra gaps= 0 total=2968 Number of alignments=807 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MASKKVHQ 1hyuA 1 :MLDTNMKT T0309 10 :NVKGFFD 1hyuA 9 :QLRAYLE T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1hyuA 18 :TKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEHHHHH 1hyuA 75 :GPRFAGSPLGHEFTS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2972 Number of alignments=808 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MA 1hyuA 1 :ML T0309 3 :SKKVHQIN 1hyuA 18 :TKPVELIA T0309 21 :EVTEQTKEA 1hyuA 26 :TLDDSAKSA T0309 34 :DFKEILSEFNGKNVSITVKEENELPVK 1hyuA 35 :EIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEHH 1hyuA 75 :GPRFAGSPLGHE Number of specific fragments extracted= 5 number of extra gaps= 0 total=2977 Number of alignments=809 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MAS 1hyuA 1 :MLD T0309 4 :K 1hyuA 19 :K T0309 8 :QINVKG 1hyuA 20 :PVELIA T0309 21 :EVTEQTKEA 1hyuA 26 :TLDDSAKSA T0309 34 :DFKEILSEFNGKNVSITVKEENELPV 1hyuA 35 :EIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEHHH 1hyuA 74 :QGPRFAGSPLGHEF Number of specific fragments extracted= 6 number of extra gaps= 0 total=2983 Number of alignments=810 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 34 :DFKEILSEFNGKNVSITVKEENELPVK 1hyuA 35 :EIKELLAEIAELSDKVTFKEDNTLPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=2984 Number of alignments=811 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 29 :AEYTYDFKEILSEFNGKNVSITVKEENELPVK 1hyuA 30 :SAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEH 1hyuA 75 :GPRFAGSPLGH Number of specific fragments extracted= 2 number of extra gaps= 0 total=2986 Number of alignments=812 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 24 :EQTKE 1hyuA 29 :DSAKS T0309 33 :YDFKEILSEFNGKNVSITVKEENELPVKG 1hyuA 34 :AEIKELLAEIAELSDKVTFKEDNTLPVRK Number of specific fragments extracted= 2 number of extra gaps= 0 total=2988 Number of alignments=813 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 5 :KVHQI 1hyuA 20 :PVELI T0309 20 :MEVTEQTKEA 1hyuA 25 :ATLDDSAKSA T0309 34 :DFKEILSEFNGKNVSITVKEENELPV 1hyuA 35 :EIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEHH 1hyuA 74 :QGPRFAGSPLGHE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2992 Number of alignments=814 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MASKKVH 1hyuA 1 :MLDTNMK T0309 8 :QINVKGFFDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1hyuA 9 :QLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEHHHHHH 1hyuA 75 :GPRFAGSPLGHEFTSL Number of specific fragments extracted= 3 number of extra gaps= 0 total=2995 Number of alignments=815 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MASKKVHQ 1hyuA 1 :MLDTNMKT T0309 10 :NVKGFFD 1hyuA 9 :QLRAYLE T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVK 1hyuA 18 :TKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEHHHHH 1hyuA 75 :GPRFAGSPLGHEFTS Number of specific fragments extracted= 4 number of extra gaps= 0 total=2999 Number of alignments=816 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MA 1hyuA 1 :ML T0309 3 :SKKVHQIN 1hyuA 18 :TKPVELIA T0309 21 :EVTEQTK 1hyuA 26 :TLDDSAK T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVKG 1hyuA 33 :SAEIKELLAEIAELSDKVTFKEDNTLPVRK T0309 62 :VEMAGDP 1hyuA 67 :ITNPGSQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=3004 Number of alignments=817 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 1 :MAS 1hyuA 1 :MLD T0309 4 :K 1hyuA 19 :K T0309 8 :QINVKG 1hyuA 20 :PVELIA T0309 21 :EVTEQTKEA 1hyuA 26 :TLDDSAKSA T0309 34 :DFKEILSEFNGKNVSITVKEENELPV 1hyuA 35 :EIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEHHH 1hyuA 74 :QGPRFAGSPLGHEF Number of specific fragments extracted= 6 number of extra gaps= 0 total=3010 Number of alignments=818 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 34 :DFKEILSEFNGKNVSITVKEENELPVK 1hyuA 35 :EIKELLAEIAELSDKVTFKEDNTLPVR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3011 Number of alignments=819 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 29 :AEYTYDFKEILSEFNGKNVSITVKEENELPVK 1hyuA 30 :SAKSAEIKELLAEIAELSDKVTFKEDNTLPVR T0309 61 :GVEMAGDPLEH 1hyuA 75 :GPRFAGSPLGH Number of specific fragments extracted= 2 number of extra gaps= 0 total=3013 Number of alignments=820 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 25 :QTK 1hyuA 30 :SAK T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVK 1hyuA 33 :SAEIKELLAEIAELSDKVTFKEDNTLPVR Number of specific fragments extracted= 2 number of extra gaps= 0 total=3015 Number of alignments=821 # 1hyuA read from 1hyuA/merged-a2m # found chain 1hyuA in template set T0309 5 :KVHQI 1hyuA 20 :PVELI T0309 20 :MEVTEQTKEA 1hyuA 25 :ATLDDSAKSA T0309 34 :DFKEILSEFNGKNVSITVKEENELPV 1hyuA 35 :EIKELLAEIAELSDKVTFKEDNTLPV T0309 60 :KGVEMAGDPLEHH 1hyuA 74 :QGPRFAGSPLGHE Number of specific fragments extracted= 4 number of extra gaps= 0 total=3019 Number of alignments=822 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bg5A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bg5A expands to /projects/compbio/data/pdb/2bg5.pdb.gz 2bg5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0309 read from 2bg5A/merged-a2m # 2bg5A read from 2bg5A/merged-a2m # adding 2bg5A to template set # found chain 2bg5A in template set Warning: unaligning (T0309)A2 because first residue in template chain is (2bg5A)M250 T0309 3 :SKKVHQINVKGFFD 2bg5A 251 :EGLKQLKDLPAETP T0309 17 :MDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSI 2bg5A 299 :FLYMDRNSLPSEEEQFEAYKEVVEKMGGRPVTI T0309 50 :TVKEENELPVKGV 2bg5A 365 :DRPDIFKTQLRAI T0309 63 :EMAGDPLEHHHHHH 2bg5A 504 :EMAGDPLAAVILLG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3023 Number of alignments=823 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 4 :KKVHQINVK 2bg5A 264 :PDGKKVMLA T0309 13 :GFF 2bg5A 277 :TPK T0309 16 :DMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSI 2bg5A 298 :EFLYMDRNSLPSEEEQFEAYKEVVEKMGGRPVTI T0309 50 :TVKEENELP 2bg5A 425 :KVGIMVEIP T0309 59 :VKG 2bg5A 501 :MCG T0309 63 :EMAGDPLEHHHHH 2bg5A 504 :EMAGDPLAAVILL T0309 76 :H 2bg5A 572 :I Number of specific fragments extracted= 7 number of extra gaps= 0 total=3030 Number of alignments=824 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVSI 2bg5A 301 :YMDRNSLPSEEEQFEAYKEVVEKMGGRPVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=3031 Number of alignments=825 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVSIT 2bg5A 301 :YMDRNSLPSEEEQFEAYKEVVEKMGGRPVTIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3032 Number of alignments=826 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 1 :MASKKVHQINVKGF 2bg5A 279 :KDVASALANGAEGV T0309 15 :FDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSI 2bg5A 297 :TEFLYMDRNSLPSEEEQFEAYKEVVEKMGGRPVTI T0309 50 :TVKEEN 2bg5A 347 :MPKEMN T0309 56 :ELPVKGV 2bg5A 412 :ELDREGV T0309 63 :EMAGDPLEHHHHHH 2bg5A 504 :EMAGDPLAAVILLG Number of specific fragments extracted= 5 number of extra gaps= 0 total=3037 Number of alignments=827 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 3 :SKKVHQ 2bg5A 251 :EGLKQL T0309 9 :INVKG 2bg5A 287 :NGAEG T0309 14 :F 2bg5A 294 :L T0309 15 :FDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITV 2bg5A 297 :TEFLYMDRNSLPSEEEQFEAYKEVVEKMGGRPVTIRT T0309 52 :KEEN 2bg5A 349 :KEMN T0309 56 :ELPVKG 2bg5A 412 :ELDREG T0309 63 :EMAGDPLEHHHHH 2bg5A 504 :EMAGDPLAAVILL T0309 76 :H 2bg5A 572 :I Number of specific fragments extracted= 8 number of extra gaps= 0 total=3045 Number of alignments=828 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 16 :DMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSI 2bg5A 298 :EFLYMDRNSLPSEEEQFEAYKEVVEKMGGRPVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=3046 Number of alignments=829 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVSIT 2bg5A 301 :YMDRNSLPSEEEQFEAYKEVVEKMGGRPVTIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3047 Number of alignments=830 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 1 :MASKKVHQINVKGF 2bg5A 279 :KDVASALANGAEGV T0309 15 :FDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSI 2bg5A 297 :TEFLYMDRNSLPSEEEQFEAYKEVVEKMGGRPVTI T0309 50 :TVKEENELPVKGV 2bg5A 405 :ILEEVKAELDREG T0309 63 :EMAGDPLEHHHHHH 2bg5A 504 :EMAGDPLAAVILLG Number of specific fragments extracted= 4 number of extra gaps= 0 total=3051 Number of alignments=831 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set Warning: unaligning (T0309)H76 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bg5A)G573 T0309 1 :MASKKVHQINVK 2bg5A 261 :AETPDGKKVMLA T0309 13 :G 2bg5A 291 :G T0309 14 :F 2bg5A 294 :L T0309 15 :FDMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSITV 2bg5A 297 :TEFLYMDRNSLPSEEEQFEAYKEVVEKMGGRPVTIRT T0309 52 :KEEN 2bg5A 349 :KEMN T0309 56 :ELPV 2bg5A 431 :EIPS T0309 60 :K 2bg5A 479 :P T0309 63 :EMAGDPLEHHH 2bg5A 504 :EMAGDPLAAVI T0309 74 :HH 2bg5A 570 :KD Number of specific fragments extracted= 9 number of extra gaps= 0 total=3060 Number of alignments=832 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 16 :DMDVMEVTEQTKEAEYTYDFKEILSEFNGKNVSI 2bg5A 298 :EFLYMDRNSLPSEEEQFEAYKEVVEKMGGRPVTI Number of specific fragments extracted= 1 number of extra gaps= 0 total=3061 Number of alignments=833 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 19 :VMEVTEQTKEAEYTYDFKEILSEFNGKNVSIT 2bg5A 301 :YMDRNSLPSEEEQFEAYKEVVEKMGGRPVTIR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3062 Number of alignments=834 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 63 :EMAGDPL 2bg5A 504 :EMAGDPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3063 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=3063 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 1 :M 2bg5A 250 :M T0309 2 :ASKKVHQINVKGFFDMDV 2bg5A 282 :ASALANGAEGVGLFRTEF T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSIT 2bg5A 302 :MDRNSLPSEEEQFEAYKEVVEKMGGRPVTIR T0309 51 :VKEENELPVKGVEMAGDPLEHHHHHH 2bg5A 336 :IGGDKELPYLDMPKEMNPFLGYRAIR Number of specific fragments extracted= 4 number of extra gaps= 0 total=3067 Number of alignments=835 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 1 :MASKK 2bg5A 250 :MEGLK T0309 6 :V 2bg5A 269 :V T0309 10 :NV 2bg5A 274 :NI T0309 13 :GFFDMDV 2bg5A 293 :GLFRTEF T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSIT 2bg5A 302 :MDRNSLPSEEEQFEAYKEVVEKMGGRPVTIR T0309 51 :VKEENELPVKGVEMAGDPLEHHHH 2bg5A 336 :IGGDKELPYLDMPKEMNPFLGYRA Number of specific fragments extracted= 6 number of extra gaps= 0 total=3073 Number of alignments=836 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 1 :MAS 2bg5A 250 :MEG T0309 4 :KKVHQ 2bg5A 267 :KKVML T0309 9 :INV 2bg5A 273 :ANI T0309 13 :GFFDMDVMEVTEQT 2bg5A 293 :GLFRTEFLYMDRNS T0309 27 :KEAEYTYDFKEILSEFNGKNVSIT 2bg5A 309 :SEEEQFEAYKEVVEKMGGRPVTIR T0309 51 :VKEENELPVKGVEMAGDPLEHHH 2bg5A 336 :IGGDKELPYLDMPKEMNPFLGYR Number of specific fragments extracted= 6 number of extra gaps= 0 total=3079 Number of alignments=837 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 1 :MAS 2bg5A 250 :MEG T0309 4 :KKVHQINV 2bg5A 267 :KKVMLAAN T0309 13 :GFFDMDV 2bg5A 293 :GLFRTEF T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITV 2bg5A 302 :MDRNSLPSEEEQFEAYKEVVEKMGGRPVTIRT T0309 52 :KEENELPVKGVEMAGDPLEHHHHH 2bg5A 335 :DIGGDKELPYLDMPKEMNPFLGYR Number of specific fragments extracted= 5 number of extra gaps= 0 total=3084 Number of alignments=838 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 63 :EMAGDPL 2bg5A 504 :EMAGDPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3085 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 32 :TYDFKEILSEFNGKNVSIT 2bg5A 314 :FEAYKEVVEKMGGRPVTIR T0309 51 :VKEENELPV 2bg5A 336 :IGGDKELPY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3087 Number of alignments=839 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 35 :FKEILSEFNGKNVSIT 2bg5A 317 :YKEVVEKMGGRPVTIR T0309 51 :VKEENELPVKGVEMAGDPLEH 2bg5A 336 :IGGDKELPYLDMPKEMNPFLG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3089 Number of alignments=840 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITV 2bg5A 302 :MDRNSLPSEEEQFEAYKEVVEKMGGRPVTIRT T0309 52 :KEENELPVKGVEMAGDPLEHHHH 2bg5A 335 :DIGGDKELPYLDMPKEMNPFLGY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3091 Number of alignments=841 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 1 :M 2bg5A 250 :M T0309 2 :ASKKVHQINVKGFFDMDV 2bg5A 282 :ASALANGAEGVGLFRTEF T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSIT 2bg5A 302 :MDRNSLPSEEEQFEAYKEVVEKMGGRPVTIR T0309 51 :VKEENELPVKGVEMAGDPLEHHHHHH 2bg5A 336 :IGGDKELPYLDMPKEMNPFLGYRAIR Number of specific fragments extracted= 4 number of extra gaps= 0 total=3095 Number of alignments=842 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 1 :MASKK 2bg5A 250 :MEGLK T0309 6 :V 2bg5A 269 :V T0309 10 :NV 2bg5A 274 :NI T0309 13 :GFFDMDV 2bg5A 293 :GLFRTEF T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSIT 2bg5A 302 :MDRNSLPSEEEQFEAYKEVVEKMGGRPVTIR T0309 51 :VKEENELPVKGVEMAGDPLEHHHH 2bg5A 336 :IGGDKELPYLDMPKEMNPFLGYRA Number of specific fragments extracted= 6 number of extra gaps= 0 total=3101 Number of alignments=843 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 1 :MAS 2bg5A 250 :MEG T0309 4 :KKVHQ 2bg5A 267 :KKVML T0309 9 :INV 2bg5A 273 :ANI T0309 13 :GFFDMDVMEVTEQT 2bg5A 293 :GLFRTEFLYMDRNS T0309 27 :KEAEYTYDFKEILSEFNGKNVSIT 2bg5A 309 :SEEEQFEAYKEVVEKMGGRPVTIR T0309 51 :VKEENELPVKGVEMAGDPLEHHH 2bg5A 336 :IGGDKELPYLDMPKEMNPFLGYR Number of specific fragments extracted= 6 number of extra gaps= 0 total=3107 Number of alignments=844 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 1 :MAS 2bg5A 250 :MEG T0309 4 :KKVHQINV 2bg5A 267 :KKVMLAAN T0309 13 :GFFDMDV 2bg5A 293 :GLFRTEF T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITV 2bg5A 302 :MDRNSLPSEEEQFEAYKEVVEKMGGRPVTIRT T0309 52 :KEENELPVKGVEMAGDPLEHHHHH 2bg5A 335 :DIGGDKELPYLDMPKEMNPFLGYR Number of specific fragments extracted= 5 number of extra gaps= 0 total=3112 Number of alignments=845 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 63 :EMAGDPL 2bg5A 504 :EMAGDPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3113 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 32 :TYDFKEILSEFNGKNVSIT 2bg5A 314 :FEAYKEVVEKMGGRPVTIR T0309 51 :VKEENELPV 2bg5A 336 :IGGDKELPY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3115 Number of alignments=846 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 35 :FKEILSEFNGKNVSIT 2bg5A 317 :YKEVVEKMGGRPVTIR T0309 51 :VKEENELPVKGVEMAGDPLEH 2bg5A 336 :IGGDKELPYLDMPKEMNPFLG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3117 Number of alignments=847 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITV 2bg5A 302 :MDRNSLPSEEEQFEAYKEVVEKMGGRPVTIRT T0309 52 :KEENELPVKGVEMAGDPLEHHHH 2bg5A 335 :DIGGDKELPYLDMPKEMNPFLGY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3119 Number of alignments=848 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 1 :M 2bg5A 250 :M T0309 2 :ASKKVHQINVKGFFDMDV 2bg5A 282 :ASALANGAEGVGLFRTEF T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSIT 2bg5A 302 :MDRNSLPSEEEQFEAYKEVVEKMGGRPVTIR T0309 51 :VKEENELPVKGVEMAGDPLEHHHHHH 2bg5A 336 :IGGDKELPYLDMPKEMNPFLGYRAIR Number of specific fragments extracted= 4 number of extra gaps= 0 total=3123 Number of alignments=849 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 1 :MASKK 2bg5A 250 :MEGLK T0309 6 :V 2bg5A 269 :V T0309 10 :NV 2bg5A 274 :NI T0309 13 :GFFDMDV 2bg5A 293 :GLFRTEF T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSIT 2bg5A 302 :MDRNSLPSEEEQFEAYKEVVEKMGGRPVTIR T0309 51 :VKEENELPVKGVEMAGDPLEHHHH 2bg5A 336 :IGGDKELPYLDMPKEMNPFLGYRA Number of specific fragments extracted= 6 number of extra gaps= 0 total=3129 Number of alignments=850 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 1 :MASKK 2bg5A 250 :MEGLK T0309 13 :GFFDMDV 2bg5A 293 :GLFRTEF T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSIT 2bg5A 302 :MDRNSLPSEEEQFEAYKEVVEKMGGRPVTIR T0309 51 :VKEENELPVKGVEMAGDPLEHHH 2bg5A 336 :IGGDKELPYLDMPKEMNPFLGYR Number of specific fragments extracted= 4 number of extra gaps= 0 total=3133 Number of alignments=851 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 1 :MAS 2bg5A 250 :MEG T0309 4 :KKVHQINV 2bg5A 267 :KKVMLAAN T0309 13 :GFFDMDV 2bg5A 293 :GLFRTEF T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITV 2bg5A 302 :MDRNSLPSEEEQFEAYKEVVEKMGGRPVTIRT T0309 52 :KEENELPVKGVEMAGDPLEHHHHH 2bg5A 335 :DIGGDKELPYLDMPKEMNPFLGYR Number of specific fragments extracted= 5 number of extra gaps= 0 total=3138 Number of alignments=852 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 63 :EMAGDPL 2bg5A 504 :EMAGDPL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3139 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 32 :TYDFKEILSEFNGKNVSIT 2bg5A 314 :FEAYKEVVEKMGGRPVTIR T0309 51 :VKEENELPV 2bg5A 336 :IGGDKELPY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3141 Number of alignments=853 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 27 :KEAEYTYDFKEILSEFNGKNVSIT 2bg5A 309 :SEEEQFEAYKEVVEKMGGRPVTIR T0309 51 :VKEENELPVKGVEMAGDPLEH 2bg5A 336 :IGGDKELPYLDMPKEMNPFLG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3143 Number of alignments=854 # 2bg5A read from 2bg5A/merged-a2m # found chain 2bg5A in template set T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITV 2bg5A 302 :MDRNSLPSEEEQFEAYKEVVEKMGGRPVTIRT T0309 52 :KEENELPVKGVEMAGDPLEHHHH 2bg5A 335 :DIGGDKELPYLDMPKEMNPFLGY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3145 Number of alignments=855 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1souA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1souA/merged-a2m # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEA 1souA 1 :MLKSELRKKVLHKRINLSEEERRRLSEKV T0309 32 :TYDFKEILSEFNGKNVSITVKEENELPVKGVE 1souA 30 :ISNLKSLPEFKKSKKVALYCPIKGEVDLTPLF T0309 64 :MAGDPLEHHHHHH 1souA 75 :VEGNEISLYRVHS Number of specific fragments extracted= 3 number of extra gaps= 0 total=3148 Number of alignments=856 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set Warning: unaligning (T0309)A2 because first residue in template chain is (1souA)M1 T0309 3 :SKKV 1souA 2 :LKSE T0309 7 :HQINVKGFFDMD 1souA 7 :RKKVLHKRINLS T0309 19 :VMEVTE 1souA 57 :LTPLFP T0309 25 :QTKEAEYTYDFKEILSEFNGKNVSI 1souA 85 :VHSPACLGVGAFGIMEPVEGERVNP T0309 50 :TVKEENELPVKGVEMAGDPLEHH 1souA 160 :LPRDAWDIPVDVLVTEKNVRRLR T0309 73 :HHHH 1souA 191 :HHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=3154 Number of alignments=857 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 12 :KGFFDM 1souA 133 :KGYYDR Number of specific fragments extracted= 1 number of extra gaps= 0 total=3155 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 37 :EILSEFNGKNVSITVKEENELPV 1souA 35 :SLPEFKKSKKVALYCPIKGEVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3156 Number of alignments=858 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 1 :MASKKVHQIN 1souA 28 :KVISNLKSLP T0309 11 :VKGFFDMD 1souA 45 :VALYCPIK T0309 20 :MEVTEQTKEAEYTYDFKEILSEFNGKNVSITVKEENELPVKGVEMAGDPLEHHHHHH 1souA 53 :GEVDLTPLFPEVLKEKELILPKVEGNEISLYRVHSPACLGVGAFGIMEPVEGERVNP Number of specific fragments extracted= 3 number of extra gaps= 0 total=3159 Number of alignments=859 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 1 :MASKKVHQINVKGFF 1souA 1 :MLKSELRKKVLHKRI T0309 16 :DMDVMEVTEQT 1souA 54 :EVDLTPLFPEV T0309 27 :KEAEYTYDFKEILSEFNG 1souA 87 :SPACLGVGAFGIMEPVEG T0309 46 :NVSITVKEENELPVKGVEMAG 1souA 106 :RVNPEDVDFIAVPGVAFDLEG T0309 67 :DPLE 1souA 160 :LPRD T0309 71 :HHHHHH 1souA 189 :HHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=3165 Number of alignments=860 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 12 :KGFFD 1souA 133 :KGYYD Number of specific fragments extracted= 1 number of extra gaps= 0 total=3166 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 36 :KEILSEFNGKNVSITVKEENELP 1souA 34 :KSLPEFKKSKKVALYCPIKGEVD Number of specific fragments extracted= 1 number of extra gaps= 0 total=3167 Number of alignments=861 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 66 :GDPLEHHHHHH 1souA 184 :GRSLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=3168 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEILS 1souA 133 :KGYYDRLLKRVKGLKVGVAYSFQVFERLP T0309 41 :EFNGKNVSITVKEENELPVK 1souA 163 :DAWDIPVDVLVTEKNVRRLR T0309 65 :AGDPLEHHHHHH 1souA 183 :DGRSLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=3171 Number of alignments=862 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 1 :MASK 1souA 1 :MLKS T0309 5 :KVHQINVKGFFDMDVMEVTEQTKEAEYTYDF 1souA 84 :RVHSPACLGVGAFGIMEPVEGERVNPEDVDF T0309 36 :KEILSEFNGKNVSITV 1souA 137 :DRLLKRVKGLKVGVAY T0309 52 :KEENELPVKGVEMA 1souA 162 :RDAWDIPVDVLVTE T0309 66 :GDPLEHHHHHH 1souA 184 :GRSLEHHHHHH Number of specific fragments extracted= 5 number of extra gaps= 0 total=3176 Number of alignments=863 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 1 :MASKKVHQ 1souA 1 :MLKSELRK T0309 9 :INVKGFFDM 1souA 49 :CPIKGEVDL T0309 18 :DVMEVTEQTKEAEYTYDF 1souA 97 :GIMEPVEGERVNPEDVDF T0309 36 :KEILSEFNGKNVSITV 1souA 137 :DRLLKRVKGLKVGVAY T0309 52 :KEENELPVKGV 1souA 162 :RDAWDIPVDVL T0309 66 :GDPLEHHHHHH 1souA 184 :GRSLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=3182 Number of alignments=864 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 1 :MA 1souA 1 :ML T0309 3 :SKK 1souA 42 :SKK T0309 6 :VHQINVKGFFDMDVMEVTEQTK 1souA 85 :VHSPACLGVGAFGIMEPVEGER T0309 32 :TYDFKEILSEFNG 1souA 133 :KGYYDRLLKRVKG T0309 46 :NVSITVKEENELPV 1souA 168 :PVDVLVTEKNVRRL T0309 64 :MAGDPLEHHHHHH 1souA 182 :RDGRSLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=3188 Number of alignments=865 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 1 :MA 1souA 1 :ML T0309 3 :SKKVHQIN 1souA 42 :SKKVALYC T0309 11 :VKGFFDMD 1souA 51 :IKGEVDLT T0309 19 :VMEVTEQ 1souA 98 :IMEPVEG T0309 26 :TKEAEY 1souA 109 :PEDVDF T0309 32 :TYDFKEILSEFNG 1souA 133 :KGYYDRLLKRVKG T0309 45 :KNVSITVKEENELPVK 1souA 167 :IPVDVLVTEKNVRRLR T0309 65 :AGDPLEHHHHHH 1souA 183 :DGRSLEHHHHHH Number of specific fragments extracted= 8 number of extra gaps= 0 total=3196 Number of alignments=866 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 66 :GDPLEHHHHHH 1souA 184 :GRSLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=3197 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEILS 1souA 133 :KGYYDRLLKRVKGLKVGVAYSFQVFERLP T0309 41 :EFNGKNVSITVKEENELPVK 1souA 163 :DAWDIPVDVLVTEKNVRRLR T0309 65 :AGDPLEHHHHHH 1souA 183 :DGRSLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=3200 Number of alignments=867 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 46 :NVSITVKEENELPVK 1souA 168 :PVDVLVTEKNVRRLR T0309 65 :AGDPLEHHHHHH 1souA 183 :DGRSLEHHHHHH Number of specific fragments extracted= 2 number of extra gaps= 0 total=3202 Number of alignments=868 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 33 :YDFKEILSEFNG 1souA 134 :GYYDRLLKRVKG T0309 45 :KNVSITVKEENELPVK 1souA 167 :IPVDVLVTEKNVRRLR T0309 65 :AGDPLEHHHHHH 1souA 183 :DGRSLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=3205 Number of alignments=869 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 1 :MASK 1souA 1 :MLKS T0309 5 :KVHQINVKGFFDMDVMEVTEQTKEAEYTYDF 1souA 84 :RVHSPACLGVGAFGIMEPVEGERVNPEDVDF T0309 36 :KEILSEFNGKNVSITV 1souA 137 :DRLLKRVKGLKVGVAY T0309 52 :KEENELPVKGVEMA 1souA 162 :RDAWDIPVDVLVTE T0309 66 :GDPLEHHHHHH 1souA 184 :GRSLEHHHHHH Number of specific fragments extracted= 5 number of extra gaps= 0 total=3210 Number of alignments=870 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 1 :MASKKVHQ 1souA 1 :MLKSELRK T0309 9 :INVKGFFDM 1souA 49 :CPIKGEVDL T0309 18 :DVMEVTEQTKEAEYTYDF 1souA 97 :GIMEPVEGERVNPEDVDF T0309 36 :KEILSEFNGKNVSITV 1souA 137 :DRLLKRVKGLKVGVAY T0309 52 :KEENELPVKGV 1souA 162 :RDAWDIPVDVL T0309 66 :GDPLEHHHHHH 1souA 184 :GRSLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=3216 Number of alignments=871 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 1 :MA 1souA 1 :ML T0309 3 :SKK 1souA 42 :SKK T0309 6 :VHQINVKGFFDMDVMEVTEQTK 1souA 85 :VHSPACLGVGAFGIMEPVEGER T0309 32 :TYDFKEILSEFNG 1souA 133 :KGYYDRLLKRVKG T0309 46 :NVSITVKEENELPV 1souA 168 :PVDVLVTEKNVRRL T0309 64 :MAGDPLEHHHHHH 1souA 182 :RDGRSLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=3222 Number of alignments=872 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 1 :MA 1souA 1 :ML T0309 3 :SKKVHQIN 1souA 42 :SKKVALYC T0309 11 :VKGFFDMD 1souA 51 :IKGEVDLT T0309 19 :VMEVTEQ 1souA 98 :IMEPVEG T0309 26 :TKEAEY 1souA 109 :PEDVDF T0309 32 :TYDFKEILSEFNG 1souA 133 :KGYYDRLLKRVKG T0309 45 :KNVSITVKEENELPVK 1souA 167 :IPVDVLVTEKNVRRLR T0309 65 :AGDPLEHHHHHH 1souA 183 :DGRSLEHHHHHH Number of specific fragments extracted= 8 number of extra gaps= 0 total=3230 Number of alignments=873 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 66 :GDPLEHHHHHH 1souA 184 :GRSLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=3231 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEILS 1souA 133 :KGYYDRLLKRVKGLKVGVAYSFQVFERLP T0309 41 :EFNGKNVSITVKEENELPVK 1souA 163 :DAWDIPVDVLVTEKNVRRLR T0309 65 :AGDPLEHHHHHH 1souA 183 :DGRSLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=3234 Number of alignments=874 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 46 :NVSITVKEENELPVK 1souA 168 :PVDVLVTEKNVRRLR T0309 65 :AGDPLEHHHHHH 1souA 183 :DGRSLEHHHHHH Number of specific fragments extracted= 2 number of extra gaps= 0 total=3236 Number of alignments=875 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 33 :YDFKEILSEFNG 1souA 134 :GYYDRLLKRVKG T0309 45 :KNVSITVKEENELPVK 1souA 167 :IPVDVLVTEKNVRRLR T0309 65 :AGDPLEHHHHHH 1souA 183 :DGRSLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=3239 Number of alignments=876 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 1 :MASK 1souA 1 :MLKS T0309 5 :KVHQINVKGFFDMDVMEVTEQTKEAEYTYDF 1souA 84 :RVHSPACLGVGAFGIMEPVEGERVNPEDVDF T0309 36 :KEILSEFNGKNVSITV 1souA 137 :DRLLKRVKGLKVGVAY T0309 52 :KEENELPVKGVEMA 1souA 162 :RDAWDIPVDVLVTE T0309 66 :GDPLEHHHHHH 1souA 184 :GRSLEHHHHHH Number of specific fragments extracted= 5 number of extra gaps= 0 total=3244 Number of alignments=877 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 1 :MASKKVHQ 1souA 1 :MLKSELRK T0309 9 :INVKGFFDM 1souA 49 :CPIKGEVDL T0309 18 :DVMEVTEQTKEAEYTYDF 1souA 97 :GIMEPVEGERVNPEDVDF T0309 36 :KEILSEFNGKNVSITV 1souA 137 :DRLLKRVKGLKVGVAY T0309 52 :KEENELPVKGV 1souA 162 :RDAWDIPVDVL T0309 66 :GDPLEHHHHHH 1souA 184 :GRSLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=3250 Number of alignments=878 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 1 :MA 1souA 1 :ML T0309 6 :VHQINVKGFFDMDVMEVTEQTKEAE 1souA 85 :VHSPACLGVGAFGIMEPVEGERVNP T0309 35 :FKEILSEFNGKNVSIT 1souA 136 :YDRLLKRVKGLKVGVA T0309 52 :KEENELPV 1souA 162 :RDAWDIPV T0309 60 :KGVE 1souA 176 :KNVR T0309 64 :MAGDPLEHHHHHH 1souA 182 :RDGRSLEHHHHHH Number of specific fragments extracted= 6 number of extra gaps= 0 total=3256 Number of alignments=879 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 1 :MA 1souA 1 :ML T0309 3 :SKKVHQIN 1souA 42 :SKKVALYC T0309 11 :VKGFFDMD 1souA 51 :IKGEVDLT T0309 19 :VMEVTEQ 1souA 98 :IMEPVEG T0309 26 :TKEAEY 1souA 109 :PEDVDF T0309 32 :TYDFKEILSEFNG 1souA 133 :KGYYDRLLKRVKG T0309 45 :KNVSITVKEENELPVK 1souA 167 :IPVDVLVTEKNVRRLR T0309 65 :AGDPLEHHHHHH 1souA 183 :DGRSLEHHHHHH Number of specific fragments extracted= 8 number of extra gaps= 0 total=3264 Number of alignments=880 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 66 :GDPLEHHHHHH 1souA 184 :GRSLEHHHHHH Number of specific fragments extracted= 1 number of extra gaps= 0 total=3265 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 12 :KGFFDMDVMEVTEQTKEAEYTYDFKEILS 1souA 133 :KGYYDRLLKRVKGLKVGVAYSFQVFERLP T0309 41 :EFNGKNVSITVKEENELPVK 1souA 163 :DAWDIPVDVLVTEKNVRRLR T0309 65 :AGDPLEHHHHHH 1souA 183 :DGRSLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=3268 Number of alignments=881 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 46 :NVSITVKEENELPVK 1souA 168 :PVDVLVTEKNVRRLR T0309 65 :AGDPLEHHHHHH 1souA 183 :DGRSLEHHHHHH Number of specific fragments extracted= 2 number of extra gaps= 0 total=3270 Number of alignments=882 # 1souA read from 1souA/merged-a2m # found chain 1souA in template set T0309 34 :DFKEILSEFNG 1souA 135 :YYDRLLKRVKG T0309 45 :KNVSITVKEENELPVK 1souA 167 :IPVDVLVTEKNVRRLR T0309 65 :AGDPLEHHHHHH 1souA 183 :DGRSLEHHHHHH Number of specific fragments extracted= 3 number of extra gaps= 0 total=3273 Number of alignments=883 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1esfA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0309 read from 1esfA/merged-a2m # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEAEYTYDFK 1esfA 22 :ALGNLKQIYYYNEKAKTENKESHDQFLQHTILFKGF T0309 37 :EILSEFNGKNVSITVKEENELP 1esfA 75 :DIVDKYKGKKVDLYGAYYGYQC T0309 59 :VKGVEMAGDPLEHHHHHH 1esfA 120 :TEEKKVPINLWLDGKQNT Number of specific fragments extracted= 3 number of extra gaps= 0 total=3276 Number of alignments=884 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set T0309 1 :MASKKVHQINVKGFFDMDVMEVTEQTKEA 1esfA 22 :ALGNLKQIYYYNEKAKTENKESHDQFLQH T0309 30 :EYTYDFKEILSEFNGKNVSI 1esfA 68 :LVDFDSKDIVDKYKGKKVDL T0309 50 :TVKEENEL 1esfA 112 :TLHDNNRL T0309 58 :PVKGVEM 1esfA 130 :WLDGKQN T0309 65 :AGDPLEHHHHH 1esfA 206 :SNTLLRIYRDN Number of specific fragments extracted= 5 number of extra gaps= 0 total=3281 Number of alignments=885 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set T0309 36 :KEILSEFNGKNVSI 1esfA 74 :KDIVDKYKGKKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3282 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set T0309 38 :ILSEFNGKN 1esfA 76 :IVDKYKGKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3283 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)T26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)H75 because last residue in template chain is (1esfA)S233 T0309 1 :MA 1esfA 2 :EK T0309 3 :SK 1esfA 19 :QG T0309 5 :KVHQINVK 1esfA 25 :NLKQIYYY T0309 13 :GFFDMDVMEVTEQ 1esfA 34 :EKAKTENKESHDQ T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1esfA 65 :NDLLVDFDSKDIVDKYKGKKVDL T0309 50 :TVKEENELPV 1esfA 112 :TLHDNNRLTE T0309 60 :KG 1esfA 128 :NL T0309 62 :VEMAGD 1esfA 196 :YDLFGA T0309 69 :LEHHHH 1esfA 226 :IDIYLY Number of specific fragments extracted= 9 number of extra gaps= 0 total=3292 Number of alignments=886 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set T0309 33 :YDFKEILSEFNGKNVSI 1esfA 71 :FDSKDIVDKYKGKKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3293 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set T0309 33 :YDFKEILSEFNGKNVSI 1esfA 71 :FDSKDIVDKYKGKKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3294 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)T26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 27 :KEAEYTYDFKEILSEFNGKNVSIT 1esfA 65 :NDLLVDFDSKDIVDKYKGKKVDLY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3296 Number of alignments=887 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1esfA)S1 T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTY 1esfA 2 :EKSEEINEKDLRKKSELQGTALGNLKQIYY T0309 34 :DFKEILSEFNGKNVSI 1esfA 72 :DSKDIVDKYKGKKVDL T0309 50 :TVKEENELPVKGVEMAGDPLEHHHHHH 1esfA 93 :GYQCAGGTPNKTACMYGGVTLHDNNRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3299 Number of alignments=888 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)T26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 27 :KEAEYTYDFKEILSEFNGKNVSIT 1esfA 65 :NDLLVDFDSKDIVDKYKGKKVDLY T0309 51 :VKEENELPVKGVEMAGDPLEHHHHH 1esfA 94 :YQCAGGTPNKTACMYGGVTLHDNNR Number of specific fragments extracted= 3 number of extra gaps= 0 total=3302 Number of alignments=889 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)Y31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 1 :MAS 1esfA 1 :SEK T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 32 :T 1esfA 65 :N T0309 33 :YDFKEILSEFNGKNVSI 1esfA 71 :FDSKDIVDKYKGKKVDL T0309 50 :TVKEENELPVK 1esfA 118 :RLTEEKKVPIN T0309 62 :VEMAGD 1esfA 129 :LWLDGK T0309 68 :PLEHH 1esfA 139 :PLETV Number of specific fragments extracted= 7 number of extra gaps= 0 total=3309 Number of alignments=890 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)T26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 1 :MAS 1esfA 1 :SEK T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1esfA 65 :NDLLVDFDSKDIVDKYKGKKVDL T0309 51 :VKEENELPVK 1esfA 119 :LTEEKKVPIN T0309 62 :VEMAGD 1esfA 129 :LWLDGK T0309 68 :PLEHH 1esfA 139 :PLETV Number of specific fragments extracted= 6 number of extra gaps= 0 total=3315 Number of alignments=891 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set T0309 33 :YDFKEILSEFNGKNVSI 1esfA 71 :FDSKDIVDKYKGKKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3316 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)T26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 27 :KEAEYTYDFKEILSEFNGKNVSIT 1esfA 65 :NDLLVDFDSKDIVDKYKGKKVDLY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3318 Number of alignments=892 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)Y31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 32 :T 1esfA 65 :N T0309 33 :YDFKEILSEFNGKNVSI 1esfA 71 :FDSKDIVDKYKGKKVDL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3321 Number of alignments=893 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)T26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 27 :KEAEYTYDFKEILSEFNGKNVSITV 1esfA 65 :NDLLVDFDSKDIVDKYKGKKVDLYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3323 Number of alignments=894 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1esfA)S1 T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTY 1esfA 2 :EKSEEINEKDLRKKSELQGTALGNLKQIYY T0309 34 :DFKEILSEFNGKNVSI 1esfA 72 :DSKDIVDKYKGKKVDL T0309 50 :TVKEENELPVKGVEMAGDPLEHHHHHH 1esfA 93 :GYQCAGGTPNKTACMYGGVTLHDNNRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3326 Number of alignments=895 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)T26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 27 :KEAEYTYDFKEILSEFNGKNVSIT 1esfA 65 :NDLLVDFDSKDIVDKYKGKKVDLY T0309 51 :VKEENELPVKGVEMAGDPLEHHHHH 1esfA 94 :YQCAGGTPNKTACMYGGVTLHDNNR Number of specific fragments extracted= 3 number of extra gaps= 0 total=3329 Number of alignments=896 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)Y31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 1 :MAS 1esfA 1 :SEK T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 32 :T 1esfA 65 :N T0309 33 :YDFKEILSEFNGKNVSI 1esfA 71 :FDSKDIVDKYKGKKVDL T0309 50 :TVKEENELPVK 1esfA 118 :RLTEEKKVPIN T0309 62 :VEMAGD 1esfA 129 :LWLDGK T0309 68 :PLEHH 1esfA 139 :PLETV Number of specific fragments extracted= 7 number of extra gaps= 0 total=3336 Number of alignments=897 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)T26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 1 :MAS 1esfA 1 :SEK T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1esfA 65 :NDLLVDFDSKDIVDKYKGKKVDL T0309 51 :VKEENELPVK 1esfA 119 :LTEEKKVPIN T0309 62 :VEMAGD 1esfA 129 :LWLDGK T0309 68 :PLEHH 1esfA 139 :PLETV Number of specific fragments extracted= 6 number of extra gaps= 0 total=3342 Number of alignments=898 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set T0309 33 :YDFKEILSEFNGKNVSI 1esfA 71 :FDSKDIVDKYKGKKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3343 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)T26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 27 :KEAEYTYDFKEILSEFNGKNVSIT 1esfA 65 :NDLLVDFDSKDIVDKYKGKKVDLY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3345 Number of alignments=899 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)Y31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 32 :T 1esfA 65 :N T0309 33 :YDFKEILSEFNGKNVSI 1esfA 71 :FDSKDIVDKYKGKKVDL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3348 Number of alignments=900 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)T26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 27 :KEAEYTYDFKEILSEFNGKNVSITV 1esfA 65 :NDLLVDFDSKDIVDKYKGKKVDLYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3350 Number of alignments=901 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)S3 because first residue in template chain is (1esfA)S1 T0309 4 :KKVHQINVKGFFDMDVMEVTEQTKEAEYTY 1esfA 2 :EKSEEINEKDLRKKSELQGTALGNLKQIYY T0309 34 :DFKEILSEFNGKNVSI 1esfA 72 :DSKDIVDKYKGKKVDL T0309 50 :TVKEENELPVKGVEMAGDPLEHHHHHH 1esfA 93 :GYQCAGGTPNKTACMYGGVTLHDNNRL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3353 Number of alignments=902 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)T26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 27 :KEAEYTYDFKEILSEFNGKNVSIT 1esfA 65 :NDLLVDFDSKDIVDKYKGKKVDLY T0309 51 :VKEENELPVKGVEMAGDPLEHHHHH 1esfA 94 :YQCAGGTPNKTACMYGGVTLHDNNR Number of specific fragments extracted= 3 number of extra gaps= 0 total=3356 Number of alignments=903 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)Y31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 1 :MAS 1esfA 1 :SEK T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 33 :YDFKEILSEFNGKNVSI 1esfA 71 :FDSKDIVDKYKGKKVDL T0309 50 :TVKEENELPVK 1esfA 118 :RLTEEKKVPIN T0309 62 :VEMAGD 1esfA 129 :LWLDGK T0309 68 :PLEHH 1esfA 139 :PLETV Number of specific fragments extracted= 6 number of extra gaps= 0 total=3362 Number of alignments=904 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)T26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 1 :MAS 1esfA 1 :SEK T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 27 :KEAEYTYDFKEILSEFNGKNVSI 1esfA 65 :NDLLVDFDSKDIVDKYKGKKVDL T0309 51 :VKEENELPVK 1esfA 119 :LTEEKKVPIN T0309 62 :VEMAGD 1esfA 129 :LWLDGK T0309 68 :PLEHH 1esfA 139 :PLETV Number of specific fragments extracted= 6 number of extra gaps= 0 total=3368 Number of alignments=905 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set T0309 33 :YDFKEILSEFNGKNVSI 1esfA 71 :FDSKDIVDKYKGKKVDL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3369 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)T26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 27 :KEAEYTYDFKEILSEFNGKNVSIT 1esfA 65 :NDLLVDFDSKDIVDKYKGKKVDLY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3371 Number of alignments=906 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)Y31 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 32 :TYDFKEILSEFNGKNVSIT 1esfA 70 :DFDSKDIVDKYKGKKVDLY Number of specific fragments extracted= 2 number of extra gaps= 0 total=3373 Number of alignments=907 # 1esfA read from 1esfA/merged-a2m # found chain 1esfA in template set Warning: unaligning (T0309)D16 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1esfA)Y64 Warning: unaligning (T0309)T26 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1esfA)Y64 T0309 7 :HQINVKGFF 1esfA 50 :HTILFKGFF T0309 27 :KEAEYTYDFKEILSEFNGKNVSITV 1esfA 65 :NDLLVDFDSKDIVDKYKGKKVDLYG Number of specific fragments extracted= 2 number of extra gaps= 0 total=3375 Number of alignments=908 # command:NUMB_ALIGNS: 908 RES2ATOM 0 2 RES2ATOM 1 10 RES2ATOM 2 15 RES2ATOM 3 21 RES2ATOM 4 30 RES2ATOM 5 39 RES2ATOM 6 46 RES2ATOM 7 56 RES2ATOM 8 65 RES2ATOM 9 73 RES2ATOM 10 81 RES2ATOM 11 88 RES2ATOM 13 101 RES2ATOM 14 112 RES2ATOM 15 123 RES2ATOM 16 131 RES2ATOM 17 139 RES2ATOM 18 147 RES2ATOM 19 154 RES2ATOM 20 162 RES2ATOM 21 171 RES2ATOM 22 178 RES2ATOM 23 185 RES2ATOM 24 194 RES2ATOM 25 203 RES2ATOM 26 210 RES2ATOM 27 219 RES2ATOM 28 228 RES2ATOM 29 233 RES2ATOM 30 242 RES2ATOM 31 254 RES2ATOM 32 261 RES2ATOM 33 273 RES2ATOM 34 281 RES2ATOM 35 292 RES2ATOM 36 301 RES2ATOM 37 310 RES2ATOM 38 318 RES2ATOM 39 326 RES2ATOM 40 332 RES2ATOM 41 341 RES2ATOM 42 352 RES2ATOM 44 364 RES2ATOM 45 373 RES2ATOM 46 381 RES2ATOM 47 388 RES2ATOM 48 394 RES2ATOM 49 402 RES2ATOM 50 409 RES2ATOM 51 416 RES2ATOM 52 425 RES2ATOM 53 434 RES2ATOM 54 443 RES2ATOM 55 451 RES2ATOM 56 460 RES2ATOM 57 468 RES2ATOM 58 475 RES2ATOM 59 482 RES2ATOM 61 495 RES2ATOM 62 502 RES2ATOM 63 511 RES2ATOM 64 519 RES2ATOM 66 528 RES2ATOM 67 536 RES2ATOM 68 543 RES2ATOM 69 551 RES2ATOM 70 560 RES2ATOM 71 570 RES2ATOM 72 580 RES2ATOM 73 590 RES2ATOM 74 600 RES2ATOM 75 610 Constraint 155 243 4.3744 5.4680 10.9360 3.9695 Constraint 311 382 5.5118 6.8897 13.7795 3.6611 Constraint 155 255 4.8969 6.1211 12.2422 3.5902 Constraint 282 374 5.6200 7.0250 14.0500 3.3936 Constraint 148 282 5.5427 6.9283 13.8567 3.1195 Constraint 262 496 4.7957 5.9947 11.9893 2.8758 Constraint 163 282 5.1641 6.4551 12.9102 2.8723 Constraint 82 179 5.3341 6.6676 13.3351 2.6813 Constraint 82 172 5.6104 7.0130 14.0261 2.6665 Constraint 155 274 4.5386 5.6733 11.3466 2.6486 Constraint 172 243 3.7824 4.7280 9.4559 2.5713 Constraint 148 274 4.9094 6.1368 12.2736 2.5610 Constraint 140 274 3.9663 4.9578 9.9156 2.4953 Constraint 302 389 5.5486 6.9358 13.8716 2.4736 Constraint 382 476 5.0987 6.3734 12.7469 2.4384 Constraint 319 395 5.1905 6.4881 12.9763 2.4370 Constraint 327 410 5.4897 6.8621 13.7243 2.4119 Constraint 179 255 5.6709 7.0886 14.1772 2.3586 Constraint 163 255 3.7362 4.6703 9.3406 2.3578 Constraint 311 389 5.0352 6.2940 12.5881 2.3283 Constraint 186 426 5.4236 6.7795 13.5591 2.2715 Constraint 172 255 4.7114 5.8893 11.7785 2.2334 Constraint 163 243 6.2989 7.8737 15.7473 2.2265 Constraint 319 410 4.1415 5.1769 10.3538 2.1958 Constraint 148 333 4.8057 6.0071 12.0143 2.1682 Constraint 163 262 5.2330 6.5412 13.0825 2.1382 Constraint 389 469 5.3423 6.6779 13.3558 2.1137 Constraint 155 262 5.0021 6.2527 12.5053 2.1095 Constraint 113 211 5.5206 6.9008 13.8016 2.0781 Constraint 179 444 5.7079 7.1349 14.2698 2.0240 Constraint 163 274 5.8282 7.2852 14.5704 2.0201 Constraint 211 353 5.7201 7.1501 14.3002 2.0157 Constraint 382 469 5.1691 6.4613 12.9227 1.9952 Constraint 82 243 5.6168 7.0210 14.0419 1.9875 Constraint 140 211 4.9872 6.2340 12.4679 1.9795 Constraint 148 342 6.2173 7.7716 15.5432 1.9511 Constraint 172 444 4.5568 5.6960 11.3920 1.9505 Constraint 113 204 4.1157 5.1446 10.2893 1.9248 Constraint 163 461 5.2792 6.5990 13.1981 1.9115 Constraint 186 444 3.9272 4.9089 9.8179 1.8671 Constraint 229 426 5.5239 6.9049 13.8098 1.8081 Constraint 163 452 4.1104 5.1380 10.2759 1.8061 Constraint 293 374 4.3113 5.3892 10.7783 1.7765 Constraint 195 476 4.0375 5.0469 10.0938 1.7635 Constraint 255 389 5.4196 6.7746 13.5491 1.7497 Constraint 102 179 5.7751 7.2189 14.4377 1.7363 Constraint 172 461 5.6604 7.0755 14.1510 1.7129 Constraint 220 342 3.8884 4.8606 9.7211 1.7126 Constraint 262 469 5.6185 7.0231 14.0462 1.7121 Constraint 229 319 5.6217 7.0271 14.0542 1.6981 Constraint 148 234 4.0232 5.0289 10.0579 1.6860 Constraint 262 389 5.0194 6.2742 12.5484 1.6768 Constraint 82 302 5.4636 6.8295 13.6589 1.6708 Constraint 40 132 5.1793 6.4741 12.9482 1.6550 Constraint 179 469 5.5649 6.9561 13.9121 1.6296 Constraint 179 461 3.0212 3.7765 7.5530 1.6246 Constraint 342 410 5.6285 7.0356 14.0711 1.6196 Constraint 476 581 5.9624 7.4530 14.9060 1.6119 Constraint 204 382 4.6353 5.7942 11.5883 1.6005 Constraint 31 179 5.8186 7.2733 14.5466 1.5988 Constraint 186 461 5.5353 6.9191 13.8382 1.5901 Constraint 179 476 4.2202 5.2752 10.5505 1.5886 Constraint 211 483 5.3127 6.6408 13.2817 1.5872 Constraint 282 496 5.0036 6.2545 12.5089 1.5824 Constraint 179 452 5.1875 6.4844 12.9688 1.5739 Constraint 469 544 5.4177 6.7721 13.5443 1.5705 Constraint 155 496 5.7996 7.2495 14.4990 1.5681 Constraint 211 476 6.2049 7.7562 15.5123 1.5653 Constraint 82 282 5.5014 6.8768 13.7536 1.5567 Constraint 82 274 4.6636 5.8295 11.6590 1.5451 Constraint 204 374 4.1887 5.2359 10.4718 1.5441 Constraint 186 496 5.5207 6.9009 13.8019 1.5438 Constraint 204 353 4.2595 5.3244 10.6487 1.5385 Constraint 319 571 4.5826 5.7283 11.4566 1.5331 Constraint 204 476 5.1148 6.3936 12.7871 1.5329 Constraint 186 476 5.2940 6.6175 13.2350 1.5300 Constraint 311 469 5.3767 6.7208 13.4417 1.5208 Constraint 172 452 4.3593 5.4491 10.8982 1.5125 Constraint 204 483 3.7696 4.7121 9.4241 1.5115 Constraint 229 469 6.0303 7.5378 15.0756 1.5091 Constraint 220 319 3.5435 4.4294 8.8588 1.5034 Constraint 47 262 5.0263 6.2829 12.5658 1.5031 Constraint 204 403 5.3130 6.6412 13.2824 1.5031 Constraint 274 496 5.7858 7.2323 14.4646 1.5009 Constraint 186 403 3.6375 4.5469 9.0938 1.4994 Constraint 220 353 4.4433 5.5541 11.1082 1.4960 Constraint 476 544 3.6376 4.5471 9.0941 1.4915 Constraint 204 469 4.5089 5.6361 11.2721 1.4898 Constraint 274 520 6.2758 7.8448 15.6896 1.4784 Constraint 353 483 5.4480 6.8100 13.6200 1.4768 Constraint 31 469 5.5898 6.9872 13.9744 1.4617 Constraint 476 537 6.0744 7.5930 15.1859 1.4559 Constraint 311 395 5.5926 6.9908 13.9815 1.4418 Constraint 262 544 6.0538 7.5672 15.1344 1.4343 Constraint 327 403 2.4965 3.1207 6.2414 1.4291 Constraint 186 469 4.5982 5.7477 11.4954 1.4279 Constraint 311 461 4.4698 5.5872 11.1744 1.4275 Constraint 476 552 3.9695 4.9618 9.9236 1.4270 Constraint 220 374 6.0569 7.5711 15.1422 1.4262 Constraint 333 403 4.1821 5.2276 10.4551 1.4223 Constraint 66 195 4.7455 5.9319 11.8638 1.4042 Constraint 234 520 6.2865 7.8581 15.7162 1.4016 Constraint 47 483 6.1641 7.7051 15.4102 1.3863 Constraint 319 483 3.8946 4.8682 9.7365 1.3834 Constraint 179 282 5.3624 6.7030 13.4059 1.3795 Constraint 179 262 4.2846 5.3558 10.7116 1.3793 Constraint 311 435 6.2843 7.8554 15.7109 1.3767 Constraint 293 452 4.9293 6.1617 12.3233 1.3634 Constraint 302 461 5.6357 7.0446 14.0892 1.3598 Constraint 319 469 3.9984 4.9980 9.9959 1.3507 Constraint 302 469 4.3641 5.4551 10.9101 1.3497 Constraint 319 476 6.3244 7.9056 15.8111 1.3483 Constraint 327 426 3.9730 4.9663 9.9326 1.3463 Constraint 40 255 5.6500 7.0624 14.1249 1.3436 Constraint 282 395 5.3042 6.6303 13.2606 1.3392 Constraint 327 476 6.0412 7.5516 15.1031 1.3284 Constraint 302 452 3.2190 4.0237 8.0475 1.3284 Constraint 333 426 6.0914 7.6143 15.2286 1.3254 Constraint 311 452 5.7600 7.1999 14.3999 1.3183 Constraint 82 410 3.9695 4.9618 9.9236 1.3105 Constraint 113 389 5.7699 7.2124 14.4249 1.3030 Constraint 31 243 4.3341 5.4177 10.8354 1.2894 Constraint 113 395 4.7074 5.8843 11.7686 1.2885 Constraint 319 389 4.0185 5.0231 10.0461 1.2716 Constraint 40 243 4.5908 5.7385 11.4770 1.2670 Constraint 47 274 5.0137 6.2671 12.5342 1.2328 Constraint 89 417 4.2426 5.3033 10.6065 1.2271 Constraint 74 179 5.0446 6.3057 12.6114 1.2085 Constraint 293 389 4.6358 5.7948 11.5895 1.2082 Constraint 132 403 5.7278 7.1598 14.3195 1.2004 Constraint 148 389 4.7436 5.9295 11.8590 1.2000 Constraint 82 417 5.7195 7.1494 14.2988 1.1994 Constraint 74 243 6.1473 7.6842 15.3683 1.1918 Constraint 74 148 4.6445 5.8057 11.6113 1.1424 Constraint 57 148 5.3134 6.6418 13.2836 1.1244 Constraint 89 163 5.4632 6.8290 13.6579 1.1188 Constraint 57 262 5.2232 6.5291 13.0581 1.1095 Constraint 89 410 5.5196 6.8995 13.7989 1.1035 Constraint 66 186 5.4980 6.8725 13.7450 1.0959 Constraint 82 195 4.7616 5.9520 11.9039 1.0901 Constraint 31 229 6.0234 7.5292 15.0584 1.0838 Constraint 282 382 5.6613 7.0767 14.1534 1.0812 Constraint 124 389 4.2082 5.2603 10.5206 1.0797 Constraint 229 311 4.4325 5.5406 11.0812 1.0795 Constraint 47 311 5.7452 7.1815 14.3630 1.0741 Constraint 66 243 5.2175 6.5219 13.0437 1.0706 Constraint 74 195 5.6690 7.0862 14.1724 1.0666 Constraint 74 220 5.3288 6.6610 13.3220 1.0631 Constraint 31 220 6.0233 7.5291 15.0583 1.0614 Constraint 293 426 5.7887 7.2359 14.4718 1.0501 Constraint 74 172 4.6842 5.8552 11.7105 1.0428 Constraint 172 395 4.8500 6.0625 12.1251 1.0345 Constraint 148 403 4.9243 6.1554 12.3107 1.0310 Constraint 293 382 6.1228 7.6535 15.3071 1.0234 Constraint 66 204 5.8483 7.3103 14.6207 1.0002 Constraint 124 382 4.8234 6.0293 12.0585 0.9940 Constraint 31 255 4.3040 5.3801 10.7601 0.9834 Constraint 155 389 5.4967 6.8709 13.7418 0.9810 Constraint 22 255 4.4887 5.6108 11.2217 0.9777 Constraint 179 417 4.5862 5.7327 11.4654 0.9707 Constraint 57 195 4.9210 6.1512 12.3024 0.9703 Constraint 57 204 3.8535 4.8168 9.6337 0.9641 Constraint 155 282 5.4587 6.8233 13.6466 0.9614 Constraint 163 403 3.8603 4.8254 9.6507 0.9569 Constraint 389 461 5.1085 6.3857 12.7713 0.9535 Constraint 113 382 4.0929 5.1161 10.2322 0.9505 Constraint 365 611 5.8500 7.3125 14.6249 0.9379 Constraint 172 403 5.3917 6.7396 13.4792 0.9361 Constraint 74 186 4.4311 5.5389 11.0777 0.9306 Constraint 66 426 4.9807 6.2259 12.4519 0.9297 Constraint 57 186 4.2531 5.3163 10.6327 0.9264 Constraint 31 234 5.9273 7.4091 14.8182 0.9249 Constraint 57 282 4.8168 6.0210 12.0421 0.9201 Constraint 102 282 5.6479 7.0599 14.1198 0.9166 Constraint 40 262 4.2173 5.2716 10.5432 0.9144 Constraint 374 476 5.1097 6.3871 12.7742 0.9061 Constraint 186 417 5.3948 6.7435 13.4870 0.9052 Constraint 186 410 5.5793 6.9741 13.9483 0.9019 Constraint 155 395 3.7806 4.7258 9.4516 0.9012 Constraint 163 395 5.9118 7.3898 14.7795 0.8979 Constraint 66 262 5.8040 7.2550 14.5100 0.8923 Constraint 89 172 4.2551 5.3188 10.6377 0.8919 Constraint 172 410 4.3880 5.4850 10.9699 0.8910 Constraint 3 274 5.4690 6.8362 13.6725 0.8907 Constraint 395 469 5.3044 6.6305 13.2610 0.8847 Constraint 172 417 5.6329 7.0412 14.0824 0.8807 Constraint 82 262 4.6708 5.8385 11.6771 0.8781 Constraint 66 172 4.7826 5.9783 11.9565 0.8704 Constraint 89 435 5.4087 6.7609 13.5218 0.8603 Constraint 172 282 5.4618 6.8272 13.6545 0.8570 Constraint 113 342 5.6354 7.0443 14.0885 0.8493 Constraint 311 537 5.9364 7.4205 14.8410 0.8456 Constraint 155 382 5.0743 6.3429 12.6858 0.8450 Constraint 395 476 5.0106 6.2633 12.5266 0.8434 Constraint 293 496 5.8395 7.2993 14.5987 0.8426 Constraint 155 403 5.6936 7.1170 14.2341 0.8375 Constraint 148 395 5.8896 7.3620 14.7240 0.8365 Constraint 66 319 5.1689 6.4611 12.9223 0.8342 Constraint 89 426 5.6618 7.0773 14.1545 0.8296 Constraint 102 395 5.5644 6.9556 13.9111 0.8116 Constraint 74 395 5.3102 6.6377 13.2754 0.8082 Constraint 444 520 4.8795 6.0994 12.1988 0.8011 Constraint 243 333 6.0496 7.5620 15.1240 0.7958 Constraint 66 435 5.5890 6.9863 13.9726 0.7947 Constraint 102 403 3.9487 4.9359 9.8718 0.7946 Constraint 311 544 6.0150 7.5187 15.0375 0.7910 Constraint 282 529 6.0444 7.5555 15.1110 0.7869 Constraint 243 342 5.9258 7.4073 14.8146 0.7864 Constraint 40 274 5.1412 6.4265 12.8529 0.7856 Constraint 140 389 5.3681 6.7101 13.4202 0.7851 Constraint 57 395 5.5270 6.9088 13.8176 0.7817 Constraint 163 417 5.2712 6.5890 13.1779 0.7797 Constraint 47 395 5.2769 6.5961 13.1922 0.7752 Constraint 274 529 5.6941 7.1177 14.2353 0.7742 Constraint 66 342 4.9457 6.1821 12.3642 0.7674 Constraint 220 311 5.6338 7.0422 14.0844 0.7622 Constraint 57 319 4.9682 6.2102 12.4204 0.7590 Constraint 66 395 4.6252 5.7815 11.5631 0.7553 Constraint 66 311 5.1293 6.4117 12.8233 0.7499 Constraint 47 293 4.5386 5.6732 11.3465 0.7483 Constraint 229 333 4.4924 5.6155 11.2309 0.7427 Constraint 262 342 5.6913 7.1141 14.2282 0.7425 Constraint 155 302 5.2232 6.5290 13.0580 0.7382 Constraint 3 311 5.7944 7.2429 14.4859 0.7363 Constraint 102 417 5.2475 6.5593 13.1187 0.7353 Constraint 395 512 5.2428 6.5535 13.1069 0.7275 Constraint 382 461 5.0038 6.2548 12.5095 0.7274 Constraint 11 311 5.0006 6.2508 12.5016 0.7251 Constraint 293 571 5.9582 7.4477 14.8955 0.7214 Constraint 155 342 5.0049 6.2561 12.5122 0.7160 Constraint 389 476 5.1494 6.4367 12.8734 0.7116 Constraint 293 544 5.8712 7.3391 14.6781 0.7083 Constraint 47 195 5.3844 6.7305 13.4610 0.6967 Constraint 102 410 5.5111 6.8888 13.7777 0.6936 Constraint 74 435 4.1399 5.1749 10.3498 0.6900 Constraint 47 204 5.1919 6.4899 12.9798 0.6895 Constraint 124 342 5.7554 7.1943 14.3886 0.6843 Constraint 66 229 4.9784 6.2230 12.4459 0.6814 Constraint 211 333 6.0251 7.5314 15.0628 0.6810 Constraint 148 382 5.8152 7.2690 14.5379 0.6804 Constraint 47 282 4.7961 5.9951 11.9902 0.6780 Constraint 179 426 4.7027 5.8783 11.7567 0.6766 Constraint 57 255 4.4924 5.6155 11.2309 0.6708 Constraint 163 410 6.1039 7.6299 15.2598 0.6620 Constraint 74 410 5.6105 7.0131 14.0262 0.6602 Constraint 74 426 5.4301 6.7877 13.5754 0.6593 Constraint 204 342 4.6189 5.7737 11.5473 0.6561 Constraint 47 243 3.6572 4.5715 9.1429 0.6492 Constraint 74 234 4.0946 5.1183 10.2366 0.6457 Constraint 31 274 5.5086 6.8857 13.7714 0.6454 Constraint 82 186 5.8975 7.3719 14.7439 0.6440 Constraint 417 512 5.7297 7.1621 14.3242 0.6435 Constraint 47 255 5.6044 7.0055 14.0111 0.6419 Constraint 382 512 4.7875 5.9843 11.9687 0.6417 Constraint 148 417 5.8944 7.3681 14.7361 0.6407 Constraint 22 353 5.7421 7.1776 14.3552 0.6400 Constraint 155 293 4.9153 6.1441 12.2882 0.6379 Constraint 195 435 4.9626 6.2032 12.4064 0.6370 Constraint 74 229 5.6571 7.0714 14.1428 0.6342 Constraint 82 234 5.8893 7.3616 14.7232 0.6291 Constraint 179 274 5.8294 7.2868 14.5736 0.6254 Constraint 40 179 5.5990 6.9988 13.9975 0.6237 Constraint 82 229 3.9756 4.9695 9.9391 0.6190 Constraint 243 395 5.9292 7.4115 14.8230 0.6181 Constraint 102 461 5.0453 6.3067 12.6134 0.6177 Constraint 293 395 5.3266 6.6582 13.3164 0.6170 Constraint 82 403 6.0233 7.5291 15.0582 0.6133 Constraint 410 512 5.1086 6.3857 12.7714 0.6050 Constraint 74 403 4.2981 5.3726 10.7452 0.6032 Constraint 403 476 5.1723 6.4653 12.9307 0.6027 Constraint 57 179 4.6213 5.7767 11.5534 0.6021 Constraint 262 403 5.4405 6.8007 13.6013 0.6000 Constraint 40 204 4.6922 5.8653 11.7306 0.5974 Constraint 57 274 5.3531 6.6914 13.3828 0.5892 Constraint 140 282 5.5109 6.8887 13.7773 0.5874 Constraint 82 426 4.4003 5.5004 11.0007 0.5861 Constraint 172 311 6.0445 7.5556 15.1112 0.5836 Constraint 66 353 4.9460 6.1825 12.3651 0.5765 Constraint 57 293 4.8916 6.1145 12.2290 0.5764 Constraint 66 155 4.5940 5.7425 11.4849 0.5764 Constraint 74 282 4.7659 5.9574 11.9147 0.5764 Constraint 179 410 5.4938 6.8672 13.7345 0.5762 Constraint 148 255 4.3809 5.4762 10.9524 0.5748 Constraint 140 382 3.9999 4.9999 9.9998 0.5745 Constraint 113 220 5.4761 6.8451 13.6903 0.5704 Constraint 113 255 4.2714 5.3393 10.6786 0.5697 Constraint 47 319 3.7487 4.6859 9.3718 0.5682 Constraint 66 234 6.0743 7.5929 15.1858 0.5625 Constraint 389 512 4.2450 5.3062 10.6125 0.5614 Constraint 435 520 5.6482 7.0603 14.1205 0.5613 Constraint 66 282 4.9850 6.2313 12.4626 0.5481 Constraint 47 211 5.9267 7.4084 14.8168 0.5476 Constraint 40 374 4.3629 5.4536 10.9072 0.5474 Constraint 113 282 5.2533 6.5666 13.1332 0.5471 Constraint 57 172 5.2842 6.6053 13.2106 0.5438 Constraint 243 529 5.9501 7.4377 14.8754 0.5434 Constraint 82 544 5.3573 6.6967 13.3934 0.5402 Constraint 229 395 6.2960 7.8700 15.7400 0.5392 Constraint 389 520 5.4831 6.8539 13.7079 0.5383 Constraint 113 229 5.2674 6.5843 13.1685 0.5357 Constraint 148 512 5.4930 6.8663 13.7325 0.5350 Constraint 132 274 5.1285 6.4106 12.8211 0.5333 Constraint 82 342 5.1048 6.3811 12.7621 0.5311 Constraint 57 389 4.1943 5.2428 10.4856 0.5302 Constraint 102 229 3.6433 4.5541 9.1083 0.5290 Constraint 426 496 4.5732 5.7165 11.4330 0.5289 Constraint 66 410 4.9874 6.2342 12.4684 0.5275 Constraint 195 444 4.8518 6.0647 12.1295 0.5254 Constraint 417 496 5.3888 6.7359 13.4719 0.5252 Constraint 426 512 5.0883 6.3603 12.7207 0.5240 Constraint 382 452 5.6081 7.0102 14.0203 0.5226 Constraint 234 342 5.6965 7.1206 14.2411 0.5221 Constraint 195 426 4.6056 5.7570 11.5140 0.5172 Constraint 11 302 4.6455 5.8069 11.6139 0.5167 Constraint 113 520 4.1396 5.1745 10.3490 0.5089 Constraint 22 234 5.9005 7.3757 14.7513 0.5069 Constraint 57 243 5.0509 6.3136 12.6272 0.5068 Constraint 204 282 5.0794 6.3493 12.6985 0.5062 Constraint 148 243 5.0750 6.3437 12.6874 0.5047 Constraint 40 476 5.6020 7.0025 14.0049 0.5021 Constraint 89 220 4.3313 5.4141 10.8283 0.5009 Constraint 172 426 5.0344 6.2930 12.5861 0.4988 Constraint 204 426 5.3064 6.6330 13.2661 0.4962 Constraint 22 483 5.0801 6.3502 12.7004 0.4949 Constraint 124 512 3.6403 4.5504 9.1008 0.4942 Constraint 365 483 5.2694 6.5867 13.1734 0.4923 Constraint 102 512 4.7783 5.9729 11.9458 0.4915 Constraint 243 410 5.9077 7.3846 14.7692 0.4898 Constraint 82 220 4.9207 6.1509 12.3018 0.4878 Constraint 16 243 4.9067 6.1334 12.2667 0.4858 Constraint 16 234 4.7211 5.9014 11.8028 0.4850 Constraint 40 342 5.9073 7.3842 14.7684 0.4842 Constraint 403 496 5.2906 6.6133 13.2266 0.4794 Constraint 11 293 5.5744 6.9681 13.9361 0.4761 Constraint 211 342 5.4877 6.8596 13.7192 0.4686 Constraint 102 520 4.9347 6.1684 12.3369 0.4683 Constraint 16 255 3.9693 4.9616 9.9232 0.4676 Constraint 16 311 3.9391 4.9239 9.8478 0.4669 Constraint 57 403 5.5434 6.9293 13.8586 0.4654 Constraint 186 435 5.3529 6.6911 13.3822 0.4633 Constraint 113 512 5.4735 6.8418 13.6837 0.4616 Constraint 282 410 5.4280 6.7850 13.5700 0.4608 Constraint 124 395 5.5180 6.8975 13.7950 0.4600 Constraint 163 476 4.2999 5.3748 10.7497 0.4587 Constraint 374 452 4.1484 5.1855 10.3710 0.4573 Constraint 31 374 6.0079 7.5099 15.0199 0.4566 Constraint 16 353 4.4354 5.5443 11.0886 0.4556 Constraint 22 243 4.1233 5.1542 10.3084 0.4522 Constraint 410 544 5.3725 6.7157 13.4313 0.4513 Constraint 403 503 5.3354 6.6693 13.3386 0.4460 Constraint 382 483 5.7037 7.1296 14.2592 0.4454 Constraint 262 395 5.5395 6.9244 13.8488 0.4396 Constraint 89 461 4.7919 5.9898 11.9796 0.4388 Constraint 102 220 4.6996 5.8745 11.7491 0.4386 Constraint 124 520 5.3065 6.6332 13.2663 0.4383 Constraint 82 319 4.6965 5.8706 11.7411 0.4381 Constraint 82 461 5.5772 6.9714 13.9429 0.4363 Constraint 40 365 5.6190 7.0237 14.0474 0.4353 Constraint 255 476 4.6056 5.7569 11.5139 0.4349 Constraint 102 204 5.8908 7.3635 14.7269 0.4342 Constraint 31 262 5.9560 7.4450 14.8900 0.4330 Constraint 452 520 4.5065 5.6331 11.2662 0.4323 Constraint 195 483 5.6981 7.1226 14.2453 0.4314 Constraint 496 561 5.1524 6.4405 12.8810 0.4302 Constraint 374 512 4.2114 5.2642 10.5285 0.4301 Constraint 102 211 5.7572 7.1965 14.3930 0.4300 Constraint 483 571 4.8075 6.0093 12.0187 0.4276 Constraint 40 311 5.8684 7.3355 14.6709 0.4246 Constraint 31 395 5.4983 6.8728 13.7457 0.4243 Constraint 74 163 5.4914 6.8642 13.7284 0.4236 Constraint 186 293 5.1802 6.4753 12.9505 0.4216 Constraint 40 403 5.6930 7.1163 14.2326 0.4175 Constraint 140 243 4.3233 5.4041 10.8082 0.4156 Constraint 82 395 5.2520 6.5650 13.1300 0.4140 Constraint 3 302 5.4537 6.8171 13.6342 0.4133 Constraint 57 234 4.6005 5.7506 11.5012 0.4132 Constraint 89 179 6.3119 7.8899 15.7797 0.4113 Constraint 102 255 5.0240 6.2800 12.5600 0.4111 Constraint 374 469 5.2809 6.6011 13.2022 0.4106 Constraint 503 571 5.4484 6.8105 13.6211 0.4100 Constraint 426 561 5.5958 6.9947 13.9894 0.4095 Constraint 47 403 4.5409 5.6761 11.3522 0.4069 Constraint 172 293 5.1294 6.4117 12.8234 0.4067 Constraint 40 382 5.6977 7.1221 14.2442 0.4060 Constraint 374 496 5.4363 6.7954 13.5908 0.4048 Constraint 243 426 5.3905 6.7381 13.4763 0.4047 Constraint 155 311 5.7051 7.1314 14.2628 0.4046 Constraint 11 342 6.0614 7.5767 15.1534 0.4042 Constraint 148 293 5.1399 6.4249 12.8498 0.4036 Constraint 179 435 4.9917 6.2396 12.4792 0.4035 Constraint 172 342 5.3432 6.6790 13.3580 0.4021 Constraint 382 496 5.0436 6.3045 12.6089 0.4001 Constraint 395 503 4.6513 5.8141 11.6282 0.3997 Constraint 365 452 6.2325 7.7906 15.5813 0.3982 Constraint 89 512 6.1260 7.6575 15.3150 0.3978 Constraint 47 382 4.6128 5.7660 11.5320 0.3959 Constraint 469 529 5.4276 6.7845 13.5690 0.3952 Constraint 132 496 4.6025 5.7531 11.5062 0.3941 Constraint 22 365 5.5576 6.9470 13.8939 0.3940 Constraint 113 311 5.8194 7.2742 14.5485 0.3937 Constraint 148 220 4.8673 6.0842 12.1683 0.3928 Constraint 163 444 4.6862 5.8578 11.7155 0.3908 Constraint 163 426 5.1793 6.4741 12.9483 0.3908 Constraint 66 163 5.5372 6.9215 13.8430 0.3887 Constraint 302 395 5.3374 6.6717 13.3434 0.3886 Constraint 410 483 4.8143 6.0179 12.0358 0.3880 Constraint 220 410 5.3940 6.7426 13.4851 0.3879 Constraint 57 382 5.8073 7.2592 14.5183 0.3873 Constraint 57 374 5.0176 6.2720 12.5439 0.3873 Constraint 204 311 5.0703 6.3378 12.6756 0.3872 Constraint 74 389 4.4648 5.5810 11.1620 0.3872 Constraint 403 512 6.0545 7.5681 15.1363 0.3836 Constraint 148 311 5.8398 7.2997 14.5994 0.3830 Constraint 3 262 5.5060 6.8825 13.7650 0.3825 Constraint 22 262 5.6462 7.0577 14.1155 0.3819 Constraint 31 382 5.8440 7.3050 14.6100 0.3809 Constraint 31 365 3.9353 4.9191 9.8382 0.3809 Constraint 11 333 4.2894 5.3617 10.7234 0.3794 Constraint 435 561 5.0777 6.3471 12.6942 0.3775 Constraint 262 476 4.9908 6.2385 12.4771 0.3772 Constraint 195 282 5.1940 6.4925 12.9850 0.3762 Constraint 89 211 5.9876 7.4845 14.9690 0.3758 Constraint 40 163 5.5610 6.9512 13.9025 0.3745 Constraint 74 461 4.1228 5.1535 10.3070 0.3735 Constraint 66 544 5.5459 6.9324 13.8648 0.3734 Constraint 342 512 5.0671 6.3338 12.6677 0.3733 Constraint 66 461 5.9518 7.4397 14.8795 0.3732 Constraint 3 140 5.2100 6.5125 13.0250 0.3732 Constraint 229 342 4.4488 5.5610 11.1220 0.3716 Constraint 3 255 4.4695 5.5869 11.1737 0.3699 Constraint 31 195 5.5620 6.9525 13.9051 0.3697 Constraint 211 529 6.0258 7.5323 15.0645 0.3696 Constraint 365 496 4.3259 5.4073 10.8147 0.3681 Constraint 365 512 4.9406 6.1757 12.3515 0.3677 Constraint 82 163 4.9658 6.2072 12.4144 0.3675 Constraint 426 544 5.1226 6.4033 12.8065 0.3669 Constraint 319 496 4.7482 5.9352 11.8704 0.3661 Constraint 155 426 4.4675 5.5844 11.1689 0.3654 Constraint 40 319 4.1747 5.2183 10.4367 0.3649 Constraint 16 365 3.8164 4.7705 9.5410 0.3649 Constraint 22 476 3.8374 4.7967 9.5935 0.3629 Constraint 195 452 5.6888 7.1110 14.2219 0.3629 Constraint 66 148 4.6941 5.8677 11.7353 0.3621 Constraint 211 444 5.3587 6.6984 13.3968 0.3619 Constraint 389 503 4.5063 5.6329 11.2658 0.3616 Constraint 89 255 5.3744 6.7180 13.4359 0.3593 Constraint 389 483 4.8678 6.0847 12.1695 0.3591 Constraint 410 529 4.8838 6.1047 12.2094 0.3590 Constraint 40 395 4.0376 5.0470 10.0939 0.3589 Constraint 132 395 4.4025 5.5031 11.0062 0.3588 Constraint 3 333 5.6987 7.1234 14.2468 0.3571 Constraint 410 496 5.0675 6.3344 12.6687 0.3542 Constraint 342 537 4.4704 5.5880 11.1760 0.3541 Constraint 179 302 5.9114 7.3893 14.7786 0.3540 Constraint 195 274 5.3728 6.7161 13.4321 0.3525 Constraint 47 172 5.3546 6.6932 13.3865 0.3513 Constraint 40 282 5.3905 6.7381 13.4761 0.3512 Constraint 82 155 5.8345 7.2931 14.5863 0.3493 Constraint 113 243 4.4767 5.5958 11.1916 0.3487 Constraint 163 435 4.6198 5.7748 11.5496 0.3481 Constraint 374 483 4.4793 5.5991 11.1983 0.3478 Constraint 31 282 4.4976 5.6220 11.2440 0.3470 Constraint 140 496 5.5248 6.9059 13.8119 0.3456 Constraint 395 483 5.5346 6.9182 13.8365 0.3440 Constraint 262 382 5.4797 6.8496 13.6991 0.3439 Constraint 132 389 5.5844 6.9805 13.9610 0.3430 Constraint 255 435 5.3284 6.6605 13.3210 0.3429 Constraint 132 282 4.5441 5.6801 11.3601 0.3413 Constraint 172 319 4.5779 5.7224 11.4447 0.3404 Constraint 124 255 4.3535 5.4418 10.8837 0.3376 Constraint 389 544 4.8537 6.0672 12.1343 0.3370 Constraint 47 410 6.0034 7.5043 15.0085 0.3357 Constraint 11 544 5.8522 7.3153 14.6305 0.3351 Constraint 3 148 5.5855 6.9819 13.9638 0.3347 Constraint 40 293 5.8957 7.3697 14.7393 0.3335 Constraint 66 255 5.3463 6.6829 13.3658 0.3323 Constraint 57 155 5.0845 6.3557 12.7113 0.3309 Constraint 47 374 6.2824 7.8530 15.7059 0.3286 Constraint 66 140 5.0710 6.3388 12.6776 0.3278 Constraint 16 395 5.9716 7.4645 14.9291 0.3276 Constraint 274 395 5.5858 6.9822 13.9644 0.3274 Constraint 374 503 5.6042 7.0053 14.0106 0.3263 Constraint 31 389 3.8809 4.8512 9.7023 0.3249 Constraint 186 274 4.5884 5.7355 11.4710 0.3244 Constraint 319 512 4.8145 6.0182 12.0364 0.3239 Constraint 16 327 4.1392 5.1740 10.3479 0.3237 Constraint 204 293 5.2266 6.5332 13.0665 0.3211 Constraint 11 327 4.9351 6.1688 12.3377 0.3205 Constraint 382 520 4.6672 5.8340 11.6680 0.3203 Constraint 417 529 5.3397 6.6746 13.3492 0.3190 Constraint 163 234 4.1681 5.2101 10.4203 0.3185 Constraint 82 311 4.7505 5.9381 11.8763 0.3185 Constraint 74 293 5.3466 6.6833 13.3665 0.3183 Constraint 204 444 4.4604 5.5755 11.1510 0.3180 Constraint 426 537 4.7156 5.8945 11.7890 0.3179 Constraint 195 461 4.2337 5.2921 10.5842 0.3165 Constraint 353 512 5.3716 6.7145 13.4291 0.3161 Constraint 186 282 5.0498 6.3123 12.6246 0.3158 Constraint 102 389 4.5292 5.6614 11.3229 0.3156 Constraint 374 461 4.9783 6.2229 12.4458 0.3145 Constraint 243 382 5.3207 6.6509 13.3018 0.3137 Constraint 47 417 5.2268 6.5335 13.0670 0.3125 Constraint 234 382 5.2372 6.5465 13.0930 0.3121 Constraint 353 496 5.0818 6.3523 12.7046 0.3105 Constraint 311 529 6.1493 7.6866 15.3731 0.3104 Constraint 155 319 5.0301 6.2876 12.5753 0.3103 Constraint 102 243 5.7579 7.1974 14.3948 0.3095 Constraint 204 496 5.0393 6.2992 12.5984 0.3091 Constraint 89 311 5.7627 7.2033 14.4067 0.3091 Constraint 22 274 4.7852 5.9815 11.9629 0.3084 Constraint 57 417 5.6320 7.0399 14.0799 0.3076 Constraint 374 520 5.3143 6.6429 13.2858 0.3076 Constraint 40 155 4.1794 5.2242 10.4485 0.3075 Constraint 132 410 5.1475 6.4344 12.8687 0.3063 Constraint 410 503 5.5567 6.9459 13.8919 0.3062 Constraint 389 537 5.2551 6.5689 13.1377 0.3060 Constraint 89 282 5.8368 7.2960 14.5921 0.3035 Constraint 234 365 5.0241 6.2801 12.5603 0.3032 Constraint 66 417 4.4608 5.5761 11.1521 0.3024 Constraint 57 410 3.8548 4.8184 9.6369 0.3024 Constraint 155 410 5.5643 6.9554 13.9108 0.3021 Constraint 40 389 4.8591 6.0738 12.1476 0.3016 Constraint 11 319 5.1165 6.3956 12.7912 0.3011 Constraint 3 327 3.9089 4.8861 9.7722 0.3011 Constraint 22 342 3.8866 4.8582 9.7164 0.2978 Constraint 395 496 4.9188 6.1485 12.2969 0.2973 Constraint 113 403 5.0728 6.3409 12.6819 0.2960 Constraint 74 417 5.1782 6.4727 12.9454 0.2954 Constraint 89 319 4.9308 6.1635 12.3270 0.2952 Constraint 66 179 5.3281 6.6601 13.3202 0.2952 Constraint 102 452 5.3833 6.7292 13.4583 0.2943 Constraint 66 274 4.9935 6.2418 12.4836 0.2939 Constraint 255 469 5.1426 6.4282 12.8564 0.2931 Constraint 140 255 4.7630 5.9538 11.9075 0.2929 Constraint 82 365 4.9432 6.1789 12.3579 0.2926 Constraint 483 581 4.6026 5.7532 11.5064 0.2917 Constraint 342 496 4.6554 5.8192 11.6385 0.2915 Constraint 140 311 4.8711 6.0889 12.1778 0.2905 Constraint 403 529 5.4290 6.7863 13.5726 0.2897 Constraint 435 512 5.0559 6.3199 12.6399 0.2896 Constraint 365 476 4.2526 5.3158 10.6315 0.2888 Constraint 89 544 5.4322 6.7903 13.5806 0.2875 Constraint 155 469 5.4701 6.8377 13.6753 0.2862 Constraint 16 172 4.9695 6.2119 12.4238 0.2858 Constraint 255 382 5.3863 6.7328 13.4657 0.2845 Constraint 132 243 5.3657 6.7071 13.4143 0.2844 Constraint 365 537 5.6561 7.0701 14.1403 0.2843 Constraint 3 282 4.5928 5.7410 11.4820 0.2838 Constraint 389 552 5.9465 7.4331 14.8663 0.2825 Constraint 16 382 6.1382 7.6727 15.3455 0.2815 Constraint 40 148 5.2414 6.5517 13.1034 0.2813 Constraint 496 571 5.2124 6.5155 13.0311 0.2812 Constraint 124 374 5.3741 6.7177 13.4354 0.2803 Constraint 234 403 5.8757 7.3446 14.6892 0.2791 Constraint 22 282 4.9267 6.1583 12.3167 0.2791 Constraint 16 319 5.9205 7.4006 14.8012 0.2751 Constraint 113 333 5.0036 6.2545 12.5090 0.2747 Constraint 40 461 5.4811 6.8514 13.7027 0.2737 Constraint 220 395 5.9002 7.3753 14.7505 0.2732 Constraint 89 469 4.4979 5.6223 11.2447 0.2731 Constraint 74 544 5.5513 6.9391 13.8782 0.2725 Constraint 417 537 4.7947 5.9934 11.9868 0.2717 Constraint 172 353 5.4257 6.7821 13.5641 0.2716 Constraint 389 591 5.1148 6.3934 12.7869 0.2709 Constraint 395 529 4.6085 5.7606 11.5213 0.2694 Constraint 22 293 4.4294 5.5368 11.0735 0.2694 Constraint 353 537 5.5084 6.8854 13.7709 0.2693 Constraint 389 496 4.4959 5.6199 11.2397 0.2680 Constraint 148 520 4.8939 6.1174 12.2348 0.2679 Constraint 186 311 5.7232 7.1541 14.3081 0.2673 Constraint 22 581 5.1214 6.4018 12.8036 0.2672 Constraint 102 496 4.9196 6.1495 12.2989 0.2667 Constraint 395 520 5.9008 7.3760 14.7520 0.2659 Constraint 89 195 5.0812 6.3516 12.7031 0.2658 Constraint 155 444 6.0817 7.6021 15.2041 0.2658 Constraint 365 503 5.4401 6.8001 13.6002 0.2648 Constraint 461 561 4.6022 5.7527 11.5055 0.2646 Constraint 195 410 4.4666 5.5833 11.1665 0.2610 Constraint 302 410 5.8120 7.2649 14.5299 0.2603 Constraint 102 476 4.2776 5.3470 10.6941 0.2602 Constraint 426 503 4.2177 5.2722 10.5444 0.2598 Constraint 452 561 5.2867 6.6084 13.2168 0.2597 Constraint 47 333 5.5012 6.8764 13.7529 0.2584 Constraint 40 544 5.4874 6.8593 13.7186 0.2575 Constraint 483 591 4.9497 6.1871 12.3742 0.2574 Constraint 31 293 5.0425 6.3032 12.6063 0.2572 Constraint 426 529 4.8952 6.1191 12.2381 0.2567 Constraint 389 561 3.9499 4.9373 9.8747 0.2555 Constraint 172 262 5.7928 7.2410 14.4820 0.2540 Constraint 66 389 4.8808 6.1010 12.2019 0.2536 Constraint 229 496 4.6048 5.7560 11.5120 0.2525 Constraint 374 561 3.8946 4.8682 9.7365 0.2513 Constraint 172 274 5.7120 7.1400 14.2800 0.2511 Constraint 293 410 5.1384 6.4230 12.8460 0.2510 Constraint 140 395 5.9432 7.4290 14.8581 0.2494 Constraint 40 195 5.2385 6.5481 13.0963 0.2489 Constraint 243 417 4.1679 5.2099 10.4198 0.2478 Constraint 255 417 5.5434 6.9292 13.8585 0.2455 Constraint 435 571 5.5613 6.9517 13.9033 0.2452 Constraint 496 581 4.9656 6.2071 12.4141 0.2442 Constraint 155 417 5.9025 7.3781 14.7562 0.2435 Constraint 274 410 4.7720 5.9650 11.9300 0.2433 Constraint 195 417 5.4239 6.7798 13.5597 0.2433 Constraint 243 353 5.3119 6.6399 13.2798 0.2431 Constraint 74 302 4.6765 5.8456 11.6913 0.2422 Constraint 204 365 5.1102 6.3877 12.7754 0.2420 Constraint 163 342 5.6132 7.0164 14.0329 0.2418 Constraint 66 476 5.0299 6.2874 12.5747 0.2415 Constraint 342 552 5.6480 7.0600 14.1200 0.2407 Constraint 403 483 5.6639 7.0799 14.1597 0.2402 Constraint 47 389 5.2442 6.5553 13.1105 0.2396 Constraint 435 537 4.1725 5.2156 10.4312 0.2390 Constraint 417 544 4.9588 6.1985 12.3969 0.2385 Constraint 82 353 5.3593 6.6992 13.3983 0.2384 Constraint 66 403 6.0821 7.6026 15.2053 0.2384 Constraint 31 403 5.6449 7.0561 14.1123 0.2383 Constraint 483 561 3.7874 4.7342 9.4684 0.2373 Constraint 220 483 5.5707 6.9634 13.9269 0.2366 Constraint 417 520 5.6086 7.0108 14.0215 0.2359 Constraint 382 561 4.5150 5.6438 11.2876 0.2351 Constraint 155 461 4.9642 6.2052 12.4105 0.2348 Constraint 155 234 5.9145 7.3932 14.7863 0.2346 Constraint 172 520 5.7431 7.1788 14.3577 0.2343 Constraint 57 342 5.4522 6.8153 13.6306 0.2341 Constraint 172 469 4.4471 5.5589 11.1177 0.2328 Constraint 234 333 3.2495 4.0618 8.1237 0.2326 Constraint 11 140 4.7334 5.9168 11.8336 0.2314 Constraint 327 395 4.9149 6.1436 12.2872 0.2310 Constraint 353 503 5.9151 7.3938 14.7877 0.2303 Constraint 476 561 5.1949 6.4936 12.9871 0.2297 Constraint 163 469 5.8909 7.3636 14.7272 0.2292 Constraint 234 496 5.7349 7.1686 14.3372 0.2290 Constraint 282 403 4.8102 6.0127 12.0254 0.2286 Constraint 382 503 4.5639 5.7049 11.4098 0.2275 Constraint 132 382 5.4431 6.8039 13.6078 0.2275 Constraint 148 496 5.4355 6.7943 13.5886 0.2269 Constraint 282 483 5.6425 7.0532 14.1063 0.2268 Constraint 57 353 5.4001 6.7502 13.5004 0.2260 Constraint 229 483 4.3063 5.3828 10.7656 0.2249 Constraint 172 302 5.9459 7.4324 14.8647 0.2247 Constraint 74 529 4.4427 5.5534 11.1068 0.2243 Constraint 113 496 5.2810 6.6013 13.2025 0.2242 Constraint 31 204 4.0971 5.1213 10.2426 0.2240 Constraint 461 571 4.3841 5.4801 10.9603 0.2233 Constraint 66 496 5.2692 6.5866 13.1731 0.2233 Constraint 255 503 4.7155 5.8943 11.7887 0.2226 Constraint 179 395 5.7640 7.2050 14.4099 0.2225 Constraint 417 571 5.6712 7.0890 14.1781 0.2223 Constraint 102 426 5.2343 6.5429 13.0859 0.2218 Constraint 229 410 4.9644 6.2055 12.4110 0.2216 Constraint 342 529 3.8650 4.8313 9.6626 0.2210 Constraint 31 211 5.7476 7.1845 14.3690 0.2203 Constraint 11 148 5.8959 7.3699 14.7398 0.2201 Constraint 57 229 5.9505 7.4382 14.8763 0.2199 Constraint 11 282 5.8081 7.2601 14.5203 0.2198 Constraint 40 483 5.8015 7.2518 14.5037 0.2197 Constraint 11 195 4.7302 5.9127 11.8254 0.2194 Constraint 124 403 4.4510 5.5637 11.1274 0.2194 Constraint 113 426 4.8954 6.1193 12.2385 0.2174 Constraint 148 319 5.2989 6.6236 13.2472 0.2172 Constraint 204 581 5.2447 6.5558 13.1116 0.2166 Constraint 204 571 6.2683 7.8354 15.6707 0.2166 Constraint 204 537 4.8061 6.0076 12.0153 0.2166 Constraint 410 552 5.3557 6.6947 13.3893 0.2164 Constraint 102 529 4.9765 6.2206 12.4411 0.2163 Constraint 102 374 5.4357 6.7946 13.5892 0.2157 Constraint 113 262 4.5130 5.6412 11.2825 0.2147 Constraint 3 293 4.6106 5.7632 11.5264 0.2144 Constraint 211 452 5.2501 6.5626 13.1253 0.2140 Constraint 40 172 4.8548 6.0684 12.1369 0.2136 Constraint 132 255 5.2715 6.5893 13.1787 0.2132 Constraint 57 163 4.6895 5.8618 11.7237 0.2119 Constraint 57 132 4.5778 5.7223 11.4446 0.2115 Constraint 89 365 4.5263 5.6579 11.3159 0.2114 Constraint 16 163 4.7310 5.9138 11.8275 0.2112 Constraint 319 581 5.1674 6.4593 12.9185 0.2101 Constraint 382 581 5.1499 6.4374 12.8748 0.2090 Constraint 148 262 5.6927 7.1159 14.2319 0.2087 Constraint 186 319 4.6233 5.7791 11.5582 0.2087 Constraint 155 476 5.3807 6.7259 13.4519 0.2082 Constraint 382 544 4.9526 6.1907 12.3814 0.2082 Constraint 47 148 5.0261 6.2827 12.5653 0.2077 Constraint 102 581 5.4625 6.8282 13.6563 0.2075 Constraint 234 327 5.6312 7.0390 14.0780 0.2073 Constraint 452 571 5.1044 6.3805 12.7609 0.2067 Constraint 140 512 5.5093 6.8866 13.7732 0.2061 Constraint 140 403 4.0238 5.0298 10.0596 0.2061 Constraint 31 311 4.9601 6.2002 12.4003 0.2054 Constraint 89 374 4.9172 6.1465 12.2930 0.2049 Constraint 186 374 4.7571 5.9464 11.8929 0.2046 Constraint 102 311 4.8000 6.0000 12.0000 0.2039 Constraint 148 483 5.3186 6.6483 13.2965 0.2037 Constraint 220 461 5.2712 6.5890 13.1780 0.2036 Constraint 342 601 5.6956 7.1195 14.2390 0.2036 Constraint 155 229 4.8183 6.0229 12.0458 0.2035 Constraint 172 476 6.0434 7.5542 15.1085 0.2031 Constraint 66 293 4.6310 5.7887 11.5774 0.2029 Constraint 262 435 5.5705 6.9631 13.9261 0.2028 Constraint 148 229 4.7757 5.9696 11.9392 0.2026 Constraint 435 544 5.6070 7.0087 14.0174 0.2022 Constraint 102 342 5.0294 6.2867 12.5734 0.2004 Constraint 47 163 4.9019 6.1274 12.2549 0.2002 Constraint 140 262 5.4020 6.7525 13.5050 0.2002 Constraint 293 512 4.7152 5.8940 11.7880 0.2000 Constraint 57 496 5.5901 6.9877 13.9753 0.1999 Constraint 132 319 6.2392 7.7991 15.5981 0.1990 Constraint 172 389 5.4751 6.8439 13.6879 0.1980 Constraint 452 581 5.7303 7.1629 14.3258 0.1978 Constraint 11 204 3.7285 4.6606 9.3212 0.1975 Constraint 31 342 4.4640 5.5800 11.1600 0.1967 Constraint 243 512 4.7512 5.9390 11.8780 0.1960 Constraint 382 537 4.2256 5.2820 10.5640 0.1953 Constraint 31 113 5.6494 7.0618 14.1236 0.1952 Constraint 220 469 4.9361 6.1701 12.3403 0.1946 Constraint 195 374 5.4098 6.7623 13.5245 0.1942 Constraint 74 342 4.7907 5.9884 11.9767 0.1941 Constraint 74 311 5.6208 7.0259 14.0519 0.1934 Constraint 66 561 5.9939 7.4923 14.9847 0.1928 Constraint 234 503 4.5826 5.7282 11.4565 0.1927 Constraint 132 211 5.4613 6.8266 13.6533 0.1926 Constraint 124 444 5.5841 6.9801 13.9603 0.1917 Constraint 113 444 4.0355 5.0444 10.0889 0.1917 Constraint 102 444 4.0880 5.1100 10.2200 0.1917 Constraint 102 435 4.9314 6.1642 12.3284 0.1917 Constraint 113 195 5.6839 7.1049 14.2098 0.1911 Constraint 124 496 5.4259 6.7823 13.5647 0.1910 Constraint 124 234 4.6225 5.7782 11.5563 0.1905 Constraint 22 311 4.9528 6.1910 12.3821 0.1903 Constraint 57 140 5.7137 7.1421 14.2842 0.1903 Constraint 243 483 5.5613 6.9516 13.9031 0.1901 Constraint 476 591 5.1485 6.4357 12.8713 0.1898 Constraint 155 520 4.1204 5.1505 10.3010 0.1898 Constraint 47 365 5.3727 6.7159 13.4317 0.1897 Constraint 40 581 4.8721 6.0901 12.1802 0.1897 Constraint 476 601 5.3418 6.6773 13.3545 0.1896 Constraint 140 520 4.4079 5.5099 11.0199 0.1894 Constraint 172 503 4.9328 6.1660 12.3319 0.1893 Constraint 452 552 4.6182 5.7727 11.5454 0.1886 Constraint 195 389 5.2458 6.5572 13.1144 0.1886 Constraint 11 186 4.4122 5.5153 11.0305 0.1879 Constraint 148 410 4.2538 5.3172 10.6345 0.1878 Constraint 435 529 5.2084 6.5105 13.0210 0.1876 Constraint 435 503 6.1111 7.6388 15.2777 0.1874 Constraint 113 293 4.9225 6.1532 12.3063 0.1866 Constraint 140 503 3.7607 4.7008 9.4017 0.1863 Constraint 229 327 6.1528 7.6910 15.3819 0.1847 Constraint 417 503 4.1815 5.2268 10.4537 0.1834 Constraint 426 571 5.5924 6.9905 13.9810 0.1833 Constraint 319 461 4.5741 5.7176 11.4352 0.1823 Constraint 417 552 5.2131 6.5164 13.0328 0.1814 Constraint 403 537 5.8289 7.2862 14.5724 0.1798 Constraint 255 520 4.5587 5.6983 11.3967 0.1794 Constraint 89 243 5.8474 7.3092 14.6184 0.1794 Constraint 74 319 4.5935 5.7419 11.4837 0.1790 Constraint 229 476 5.5366 6.9207 13.8415 0.1787 Constraint 113 410 5.7503 7.1879 14.3758 0.1786 Constraint 274 365 5.7617 7.2021 14.4042 0.1782 Constraint 3 89 5.7159 7.1449 14.2897 0.1776 Constraint 3 389 5.6301 7.0377 14.0754 0.1773 Constraint 403 571 4.7506 5.9382 11.8765 0.1772 Constraint 132 220 5.0033 6.2541 12.5082 0.1767 Constraint 342 520 4.2753 5.3441 10.6882 0.1767 Constraint 155 483 4.0829 5.1036 10.2073 0.1757 Constraint 16 302 5.0256 6.2820 12.5641 0.1757 Constraint 31 581 5.9907 7.4884 14.9768 0.1754 Constraint 403 544 5.9138 7.3923 14.7845 0.1746 Constraint 410 537 4.8730 6.0912 12.1824 0.1746 Constraint 444 512 4.3092 5.3865 10.7730 0.1745 Constraint 234 461 5.0854 6.3567 12.7135 0.1745 Constraint 204 435 4.4359 5.5449 11.0899 0.1743 Constraint 16 426 4.6341 5.7926 11.5852 0.1727 Constraint 172 382 4.2473 5.3091 10.6182 0.1724 Constraint 204 417 5.6775 7.0969 14.1938 0.1722 Constraint 47 155 4.8352 6.0440 12.0880 0.1721 Constraint 382 552 5.0498 6.3123 12.6246 0.1717 Constraint 172 327 5.9974 7.4968 14.9936 0.1716 Constraint 211 389 4.1043 5.1303 10.2607 0.1711 Constraint 255 483 5.2530 6.5662 13.1325 0.1709 Constraint 302 382 5.3506 6.6882 13.3764 0.1709 Constraint 353 520 4.0264 5.0330 10.0661 0.1697 Constraint 155 435 5.8850 7.3562 14.7124 0.1690 Constraint 476 611 5.2159 6.5199 13.0398 0.1689 Constraint 410 571 5.2538 6.5672 13.1344 0.1683 Constraint 102 552 5.6229 7.0286 14.0572 0.1681 Constraint 374 552 5.5891 6.9863 13.9727 0.1669 Constraint 365 552 4.8841 6.1051 12.2102 0.1669 Constraint 132 417 4.0238 5.0298 10.0595 0.1668 Constraint 66 211 4.3423 5.4279 10.8558 0.1666 Constraint 74 537 4.2765 5.3456 10.6912 0.1665 Constraint 220 496 5.3401 6.6751 13.3502 0.1655 Constraint 124 220 4.6989 5.8736 11.7472 0.1654 Constraint 124 503 5.2669 6.5837 13.1674 0.1654 Constraint 444 591 4.7376 5.9220 11.8440 0.1653 Constraint 229 512 5.1883 6.4854 12.9708 0.1649 Constraint 444 561 5.7114 7.1392 14.2784 0.1646 Constraint 47 476 4.3990 5.4988 10.9976 0.1645 Constraint 132 333 6.1544 7.6929 15.3859 0.1640 Constraint 40 469 6.0036 7.5045 15.0090 0.1639 Constraint 40 452 4.9110 6.1387 12.2775 0.1635 Constraint 140 220 5.7522 7.1903 14.3806 0.1634 Constraint 444 581 5.0498 6.3122 12.6245 0.1633 Constraint 57 520 4.9740 6.2175 12.4351 0.1632 Constraint 435 581 5.3119 6.6398 13.2797 0.1624 Constraint 395 537 4.8681 6.0851 12.1702 0.1623 Constraint 57 512 5.6549 7.0686 14.1372 0.1622 Constraint 302 520 5.1662 6.4578 12.9156 0.1620 Constraint 186 389 5.7116 7.1396 14.2791 0.1618 Constraint 476 571 4.9791 6.2238 12.4477 0.1612 Constraint 282 389 5.5962 6.9953 13.9906 0.1608 Constraint 186 262 4.3210 5.4013 10.8026 0.1606 Constraint 319 403 5.4637 6.8296 13.6593 0.1601 Constraint 417 561 4.8952 6.1190 12.2380 0.1599 Constraint 124 365 4.0699 5.0874 10.1749 0.1598 Constraint 66 512 4.7004 5.8755 11.7510 0.1593 Constraint 132 512 4.2868 5.3585 10.7170 0.1591 Constraint 274 374 5.2396 6.5494 13.0989 0.1590 Constraint 74 255 5.0046 6.2558 12.5116 0.1588 Constraint 11 163 3.9738 4.9672 9.9344 0.1586 Constraint 124 483 5.8074 7.2592 14.5185 0.1583 Constraint 365 461 4.6669 5.8336 11.6672 0.1583 Constraint 132 234 5.0111 6.2639 12.5277 0.1579 Constraint 47 496 4.7578 5.9473 11.8945 0.1578 Constraint 220 426 5.0850 6.3562 12.7125 0.1577 Constraint 229 403 5.0530 6.3163 12.6326 0.1575 Constraint 426 520 4.3602 5.4503 10.9005 0.1571 Constraint 102 561 5.4412 6.8015 13.6031 0.1568 Constraint 342 591 5.6102 7.0128 14.0255 0.1568 Constraint 124 333 3.7218 4.6522 9.3044 0.1567 Constraint 148 452 5.1636 6.4545 12.9090 0.1560 Constraint 403 561 4.4361 5.5451 11.0903 0.1560 Constraint 102 333 4.6032 5.7540 11.5080 0.1558 Constraint 410 561 5.0826 6.3533 12.7065 0.1551 Constraint 40 496 5.7680 7.2100 14.4201 0.1550 Constraint 124 591 5.6705 7.0881 14.1762 0.1549 Constraint 124 581 5.6950 7.1187 14.2375 0.1549 Constraint 40 186 4.7422 5.9278 11.8556 0.1548 Constraint 11 389 5.2678 6.5847 13.1695 0.1542 Constraint 74 274 4.9900 6.2374 12.4749 0.1539 Constraint 220 452 5.2386 6.5483 13.0966 0.1537 Constraint 243 503 6.1138 7.6423 15.2846 0.1536 Constraint 293 417 4.1197 5.1496 10.2993 0.1536 Constraint 410 520 5.2395 6.5494 13.0988 0.1534 Constraint 229 452 5.2117 6.5146 13.0293 0.1533 Constraint 243 403 4.7902 5.9878 11.9756 0.1518 Constraint 333 552 6.0826 7.6032 15.2064 0.1514 Constraint 234 426 5.4236 6.7795 13.5591 0.1513 Constraint 89 552 4.2387 5.2984 10.5968 0.1508 Constraint 113 319 5.6866 7.1083 14.2165 0.1507 Constraint 11 274 4.3686 5.4608 10.9216 0.1504 Constraint 374 571 4.5123 5.6404 11.2808 0.1504 Constraint 113 353 5.2155 6.5194 13.0388 0.1499 Constraint 195 382 5.1264 6.4080 12.8160 0.1499 Constraint 365 520 5.4108 6.7635 13.5271 0.1492 Constraint 220 302 5.6526 7.0658 14.1315 0.1489 Constraint 132 503 3.9608 4.9510 9.9021 0.1488 Constraint 140 529 4.6696 5.8370 11.6739 0.1486 Constraint 66 503 5.6047 7.0059 14.0118 0.1486 Constraint 124 195 4.2041 5.2552 10.5104 0.1483 Constraint 3 410 6.1295 7.6619 15.3237 0.1479 Constraint 204 503 6.1238 7.6548 15.3095 0.1477 Constraint 365 591 4.9083 6.1354 12.2707 0.1474 Constraint 148 469 4.3974 5.4967 10.9935 0.1474 Constraint 410 591 5.2447 6.5559 13.1118 0.1474 Constraint 319 561 5.2317 6.5396 13.0791 0.1471 Constraint 102 319 5.5248 6.9060 13.8120 0.1468 Constraint 16 148 4.8536 6.0670 12.1340 0.1466 Constraint 102 234 5.0647 6.3309 12.6618 0.1465 Constraint 40 417 5.2220 6.5276 13.0551 0.1465 Constraint 262 410 5.0563 6.3203 12.6407 0.1461 Constraint 163 537 5.7212 7.1515 14.3030 0.1461 Constraint 444 571 5.0395 6.2994 12.5989 0.1460 Constraint 74 382 4.8042 6.0052 12.0104 0.1459 Constraint 403 520 5.6150 7.0188 14.0376 0.1455 Constraint 382 591 4.5556 5.6944 11.3889 0.1453 Constraint 365 601 5.2368 6.5459 13.0919 0.1453 Constraint 435 611 5.6374 7.0468 14.0935 0.1452 Constraint 469 571 6.1867 7.7334 15.4668 0.1450 Constraint 395 561 5.6491 7.0613 14.1226 0.1449 Constraint 82 529 5.3839 6.7299 13.4597 0.1439 Constraint 255 512 5.5472 6.9340 13.8681 0.1439 Constraint 234 512 5.8730 7.3413 14.6826 0.1439 Constraint 229 503 6.2422 7.8027 15.6054 0.1439 Constraint 82 561 4.8755 6.0944 12.1888 0.1438 Constraint 74 365 3.9375 4.9219 9.8438 0.1436 Constraint 57 311 5.0854 6.3568 12.7135 0.1434 Constraint 365 571 6.3470 7.9338 15.8675 0.1433 Constraint 365 561 6.0190 7.5238 15.0476 0.1433 Constraint 140 476 4.2547 5.3184 10.6367 0.1433 Constraint 66 452 5.2305 6.5381 13.0761 0.1430 Constraint 469 611 3.6378 4.5473 9.0946 0.1425 Constraint 452 544 3.8744 4.8430 9.6860 0.1423 Constraint 496 591 4.7697 5.9621 11.9243 0.1420 Constraint 461 611 4.8061 6.0077 12.0154 0.1416 Constraint 282 417 5.6724 7.0905 14.1809 0.1415 Constraint 82 204 4.8303 6.0379 12.0758 0.1408 Constraint 132 262 5.4001 6.7501 13.5003 0.1408 Constraint 132 520 5.6354 7.0442 14.0885 0.1406 Constraint 274 403 4.8026 6.0032 12.0065 0.1406 Constraint 512 591 5.8843 7.3554 14.7108 0.1403 Constraint 234 410 5.5456 6.9320 13.8639 0.1401 Constraint 148 461 5.1211 6.4014 12.8027 0.1398 Constraint 220 444 4.6889 5.8611 11.7222 0.1391 Constraint 403 591 5.1793 6.4741 12.9481 0.1391 Constraint 293 520 4.7073 5.8841 11.7682 0.1387 Constraint 282 520 4.3913 5.4892 10.9784 0.1387 Constraint 229 444 5.0749 6.3436 12.6872 0.1385 Constraint 327 571 6.0444 7.5555 15.1110 0.1385 Constraint 395 571 5.0045 6.2557 12.5113 0.1384 Constraint 140 229 4.9137 6.1421 12.2843 0.1384 Constraint 469 591 4.9285 6.1606 12.3212 0.1383 Constraint 74 520 5.0931 6.3664 12.7329 0.1383 Constraint 333 529 5.4224 6.7780 13.5560 0.1381 Constraint 132 483 4.2928 5.3660 10.7319 0.1379 Constraint 140 234 4.7956 5.9945 11.9889 0.1374 Constraint 74 444 5.9269 7.4086 14.8172 0.1368 Constraint 22 469 5.6817 7.1022 14.2043 0.1362 Constraint 82 255 5.7540 7.1925 14.3850 0.1361 Constraint 243 537 4.8064 6.0080 12.0160 0.1359 Constraint 262 374 4.5492 5.6865 11.3730 0.1358 Constraint 282 365 4.4436 5.5545 11.1090 0.1357 Constraint 211 319 4.4069 5.5086 11.0171 0.1354 Constraint 16 179 5.0490 6.3112 12.6224 0.1353 Constraint 124 243 5.0808 6.3511 12.7021 0.1352 Constraint 353 529 6.1530 7.6912 15.3825 0.1350 Constraint 148 476 5.4170 6.7713 13.5425 0.1349 Constraint 382 529 4.7486 5.9358 11.8715 0.1344 Constraint 82 537 5.0255 6.2819 12.5638 0.1344 Constraint 319 529 5.4304 6.7879 13.5759 0.1344 Constraint 16 229 4.8634 6.0793 12.1586 0.1343 Constraint 102 365 5.4438 6.8048 13.6095 0.1341 Constraint 342 581 6.3343 7.9179 15.8358 0.1339 Constraint 469 581 5.2667 6.5833 13.1667 0.1337 Constraint 220 333 6.1594 7.6992 15.3985 0.1336 Constraint 132 374 4.3633 5.4542 10.9083 0.1335 Constraint 11 395 4.8692 6.0864 12.1729 0.1335 Constraint 435 601 4.7884 5.9855 11.9710 0.1334 Constraint 40 113 5.0063 6.2579 12.5157 0.1333 Constraint 211 512 5.7215 7.1519 14.3038 0.1329 Constraint 333 410 5.7242 7.1552 14.3105 0.1328 Constraint 163 483 5.5057 6.8822 13.7643 0.1323 Constraint 211 293 5.1312 6.4140 12.8279 0.1323 Constraint 342 571 5.7735 7.2168 14.4337 0.1320 Constraint 148 365 5.0823 6.3529 12.7058 0.1319 Constraint 234 476 5.6776 7.0970 14.1940 0.1312 Constraint 31 172 4.9132 6.1415 12.2830 0.1306 Constraint 435 552 5.2746 6.5932 13.1864 0.1303 Constraint 382 611 5.6059 7.0073 14.0146 0.1301 Constraint 47 132 4.6606 5.8258 11.6516 0.1300 Constraint 22 389 5.7855 7.2319 14.4637 0.1300 Constraint 47 461 5.3466 6.6833 13.3666 0.1300 Constraint 220 389 5.6052 7.0065 14.0130 0.1300 Constraint 520 601 5.4104 6.7630 13.5259 0.1298 Constraint 229 461 5.3568 6.6960 13.3920 0.1298 Constraint 66 220 6.2817 7.8521 15.7041 0.1296 Constraint 89 503 4.7095 5.8868 11.7737 0.1296 Constraint 74 374 5.2459 6.5574 13.1149 0.1287 Constraint 512 611 5.4552 6.8189 13.6379 0.1284 Constraint 47 186 5.3149 6.6436 13.2871 0.1282 Constraint 234 319 5.6216 7.0270 14.0541 0.1281 Constraint 389 581 5.2318 6.5397 13.0795 0.1276 Constraint 255 496 4.9706 6.2133 12.4266 0.1273 Constraint 353 561 5.8997 7.3746 14.7492 0.1272 Constraint 179 382 4.9731 6.2163 12.4326 0.1271 Constraint 255 395 5.7650 7.2062 14.4124 0.1270 Constraint 22 179 5.1506 6.4383 12.8766 0.1267 Constraint 124 601 6.0807 7.6009 15.2018 0.1265 Constraint 113 591 6.2391 7.7988 15.5977 0.1265 Constraint 113 581 3.2662 4.0827 8.1654 0.1265 Constraint 102 571 4.4587 5.5734 11.1468 0.1265 Constraint 89 561 5.4530 6.8163 13.6325 0.1265 Constraint 262 353 5.2357 6.5447 13.0893 0.1264 Constraint 293 529 5.2452 6.5564 13.1129 0.1260 Constraint 243 469 5.3631 6.7038 13.4077 0.1259 Constraint 11 374 4.6250 5.7812 11.5625 0.1258 Constraint 3 374 4.5653 5.7066 11.4132 0.1258 Constraint 319 503 5.5876 6.9844 13.9689 0.1251 Constraint 82 496 4.2099 5.2624 10.5249 0.1250 Constraint 426 581 5.2778 6.5972 13.1945 0.1249 Constraint 66 365 4.8274 6.0342 12.0685 0.1245 Constraint 186 520 5.3636 6.7045 13.4090 0.1243 Constraint 89 342 5.2618 6.5773 13.1546 0.1240 Constraint 389 601 5.8822 7.3528 14.7056 0.1239 Constraint 374 529 5.8964 7.3705 14.7411 0.1239 Constraint 365 529 4.5566 5.6957 11.3915 0.1239 Constraint 229 544 3.6673 4.5841 9.1683 0.1238 Constraint 229 382 4.5472 5.6841 11.3681 0.1232 Constraint 16 435 3.9259 4.9074 9.8147 0.1229 Constraint 31 410 5.7844 7.2304 14.4609 0.1226 Constraint 3 395 5.1619 6.4524 12.9048 0.1222 Constraint 311 410 4.7742 5.9677 11.9354 0.1220 Constraint 417 591 5.4723 6.8404 13.6807 0.1219 Constraint 195 395 4.9834 6.2293 12.4585 0.1214 Constraint 163 389 4.9984 6.2480 12.4961 0.1213 Constraint 89 262 4.5520 5.6900 11.3799 0.1213 Constraint 3 195 5.1914 6.4893 12.9785 0.1201 Constraint 293 365 5.6997 7.1247 14.2494 0.1200 Constraint 22 302 5.0528 6.3160 12.6320 0.1200 Constraint 461 537 5.0652 6.3314 12.6629 0.1198 Constraint 342 611 3.6453 4.5567 9.1133 0.1197 Constraint 220 476 4.7514 5.9393 11.8785 0.1196 Constraint 234 374 5.3470 6.6838 13.3676 0.1194 Constraint 89 274 4.2369 5.2961 10.5922 0.1194 Constraint 163 520 6.0949 7.6187 15.2373 0.1193 Constraint 102 503 5.8541 7.3177 14.6353 0.1193 Constraint 124 262 5.2852 6.6065 13.2129 0.1192 Constraint 395 544 4.6870 5.8587 11.7174 0.1191 Constraint 255 410 5.0279 6.2849 12.5697 0.1191 Constraint 31 302 6.2972 7.8715 15.7429 0.1188 Constraint 211 435 4.9581 6.1976 12.3952 0.1188 Constraint 11 243 5.5522 6.9403 13.8806 0.1187 Constraint 195 496 6.1478 7.6847 15.3694 0.1187 Constraint 243 544 5.8432 7.3040 14.6081 0.1187 Constraint 16 204 4.7650 5.9563 11.9126 0.1186 Constraint 22 113 4.9114 6.1392 12.2785 0.1186 Constraint 89 204 5.4809 6.8512 13.7023 0.1185 Constraint 89 327 4.5688 5.7110 11.4219 0.1183 Constraint 31 102 5.8890 7.3612 14.7224 0.1182 Constraint 74 262 5.7600 7.2001 14.4001 0.1178 Constraint 113 476 3.7632 4.7040 9.4079 0.1177 Constraint 220 435 5.5711 6.9639 13.9277 0.1175 Constraint 124 229 5.4434 6.8042 13.6084 0.1173 Constraint 293 461 5.6951 7.1188 14.2377 0.1172 Constraint 3 113 4.3084 5.3855 10.7710 0.1172 Constraint 155 374 5.0758 6.3448 12.6895 0.1168 Constraint 255 461 5.6556 7.0695 14.1390 0.1165 Constraint 16 293 5.6641 7.0801 14.1602 0.1163 Constraint 124 529 6.0197 7.5247 15.0494 0.1160 Constraint 89 229 5.3367 6.6709 13.3417 0.1156 Constraint 389 529 5.2702 6.5877 13.1755 0.1152 Constraint 16 211 4.5419 5.6774 11.3548 0.1146 Constraint 3 319 5.9254 7.4068 14.8136 0.1144 Constraint 31 476 4.3415 5.4269 10.8538 0.1142 Constraint 82 483 5.4382 6.7977 13.5955 0.1140 Constraint 148 426 5.1889 6.4861 12.9722 0.1139 Constraint 22 155 4.5181 5.6476 11.2952 0.1136 Constraint 163 311 4.9277 6.1596 12.3191 0.1135 Constraint 302 529 6.0950 7.6188 15.2376 0.1132 Constraint 148 503 5.6860 7.1075 14.2149 0.1128 Constraint 47 229 4.8709 6.0886 12.1773 0.1125 Constraint 195 293 3.6128 4.5160 9.0320 0.1124 Constraint 124 353 4.8135 6.0169 12.0337 0.1120 Constraint 220 403 4.8008 6.0009 12.0019 0.1119 Constraint 469 601 5.0956 6.3695 12.7390 0.1119 Constraint 66 537 5.9729 7.4662 14.9323 0.1118 Constraint 282 444 5.6453 7.0566 14.1133 0.1117 Constraint 262 452 5.1505 6.4382 12.8763 0.1116 Constraint 22 220 5.7993 7.2492 14.4984 0.1115 Constraint 74 204 4.7576 5.9470 11.8941 0.1111 Constraint 319 417 5.0147 6.2684 12.5367 0.1108 Constraint 57 503 3.8056 4.7569 9.5139 0.1107 Constraint 47 503 5.2213 6.5266 13.0533 0.1107 Constraint 40 503 5.0715 6.3394 12.6788 0.1107 Constraint 243 444 4.9987 6.2484 12.4968 0.1100 Constraint 211 327 5.5662 6.9577 13.9155 0.1097 Constraint 282 512 5.1839 6.4799 12.9598 0.1095 Constraint 234 483 4.7416 5.9270 11.8540 0.1095 Constraint 179 293 3.3223 4.1529 8.3057 0.1094 Constraint 179 403 5.6163 7.0204 14.0408 0.1087 Constraint 395 591 5.8180 7.2725 14.5451 0.1087 Constraint 395 581 5.0337 6.2921 12.5842 0.1087 Constraint 11 220 4.8324 6.0406 12.0811 0.1085 Constraint 435 591 5.7941 7.2426 14.4852 0.1080 Constraint 155 512 4.5061 5.6327 11.2653 0.1079 Constraint 102 262 4.2109 5.2637 10.5274 0.1074 Constraint 229 417 4.3037 5.3796 10.7593 0.1072 Constraint 444 611 5.4813 6.8516 13.7033 0.1072 Constraint 102 537 5.6536 7.0670 14.1340 0.1070 Constraint 16 417 5.7560 7.1950 14.3900 0.1066 Constraint 327 529 6.1407 7.6759 15.3518 0.1064 Constraint 461 601 4.0851 5.1064 10.2127 0.1063 Constraint 132 342 5.3739 6.7174 13.4348 0.1058 Constraint 461 581 6.1258 7.6572 15.3144 0.1056 Constraint 255 426 5.1440 6.4300 12.8600 0.1056 Constraint 22 426 4.4020 5.5025 11.0050 0.1054 Constraint 89 537 3.2952 4.1190 8.2380 0.1054 Constraint 483 601 4.0486 5.0608 10.1216 0.1053 Constraint 74 155 5.2963 6.6204 13.2407 0.1051 Constraint 353 544 4.7481 5.9352 11.8703 0.1047 Constraint 204 544 5.1064 6.3829 12.7659 0.1043 Constraint 311 403 5.3941 6.7427 13.4853 0.1043 Constraint 262 417 5.6812 7.1015 14.2029 0.1042 Constraint 140 417 5.0818 6.3522 12.7045 0.1042 Constraint 11 382 5.0707 6.3383 12.6767 0.1035 Constraint 353 552 4.6035 5.7544 11.5087 0.1030 Constraint 124 211 5.0633 6.3291 12.6582 0.1024 Constraint 274 353 5.3299 6.6624 13.3247 0.1023 Constraint 374 581 3.5436 4.4295 8.8590 0.1020 Constraint 211 461 5.0278 6.2848 12.5696 0.1019 Constraint 186 395 5.0536 6.3170 12.6341 0.1016 Constraint 234 395 5.4160 6.7700 13.5399 0.1009 Constraint 255 444 4.8594 6.0743 12.1485 0.1006 Constraint 311 496 5.3820 6.7275 13.4550 0.1004 Constraint 426 552 4.2931 5.3663 10.7327 0.1004 Constraint 3 426 4.4682 5.5852 11.1704 0.1004 Constraint 520 591 5.1989 6.4986 12.9972 0.1001 Constraint 89 382 5.2095 6.5119 13.0237 0.1000 Constraint 204 512 4.8075 6.0094 12.0188 0.0996 Constraint 16 444 5.5056 6.8820 13.7640 0.0995 Constraint 243 571 5.0608 6.3260 12.6521 0.0992 Constraint 113 274 5.7184 7.1480 14.2959 0.0991 Constraint 140 426 4.8476 6.0594 12.1189 0.0987 Constraint 302 374 5.1235 6.4044 12.8088 0.0985 Constraint 82 382 5.5201 6.9001 13.8001 0.0985 Constraint 382 601 4.4130 5.5162 11.0325 0.0984 Constraint 374 601 5.1714 6.4643 12.9286 0.0983 Constraint 132 365 6.0660 7.5825 15.1650 0.0981 Constraint 89 444 4.5679 5.7099 11.4198 0.0978 Constraint 113 552 6.0094 7.5117 15.0234 0.0977 Constraint 22 172 4.0862 5.1078 10.2156 0.0975 Constraint 211 311 4.9220 6.1525 12.3050 0.0974 Constraint 22 132 5.3945 6.7431 13.4861 0.0974 Constraint 22 229 5.0188 6.2734 12.5469 0.0971 Constraint 342 476 5.2357 6.5447 13.0893 0.0967 Constraint 11 255 3.6980 4.6224 9.2449 0.0963 Constraint 426 601 5.9060 7.3824 14.7649 0.0961 Constraint 319 520 5.0013 6.2516 12.5032 0.0961 Constraint 89 234 4.5882 5.7353 11.4706 0.0961 Constraint 16 124 4.8454 6.0567 12.1134 0.0961 Constraint 211 426 5.3163 6.6454 13.2907 0.0959 Constraint 410 581 5.0998 6.3747 12.7495 0.0958 Constraint 16 102 5.5670 6.9587 13.9174 0.0953 Constraint 319 544 4.7757 5.9696 11.9392 0.0949 Constraint 195 403 5.3428 6.6785 13.3570 0.0949 Constraint 113 374 3.1134 3.8918 7.7836 0.0948 Constraint 113 365 4.3333 5.4166 10.8333 0.0948 Constraint 11 82 5.8672 7.3340 14.6679 0.0948 Constraint 403 552 4.3495 5.4369 10.8737 0.0944 Constraint 16 374 5.0849 6.3561 12.7122 0.0938 Constraint 22 410 5.0861 6.3577 12.7154 0.0937 Constraint 163 382 5.6225 7.0282 14.0564 0.0936 Constraint 82 476 5.5892 6.9865 13.9729 0.0936 Constraint 512 581 4.5765 5.7206 11.4411 0.0934 Constraint 204 327 3.5610 4.4512 8.9024 0.0931 Constraint 195 327 5.7237 7.1546 14.3092 0.0931 Constraint 74 211 5.7585 7.1981 14.3962 0.0931 Constraint 255 374 5.4998 6.8748 13.7495 0.0931 Constraint 333 496 5.5738 6.9673 13.9346 0.0931 Constraint 57 544 5.5964 6.9954 13.9909 0.0929 Constraint 342 503 5.7287 7.1609 14.3218 0.0927 Constraint 342 461 6.2141 7.7676 15.5353 0.0925 Constraint 22 163 4.1882 5.2353 10.4705 0.0923 Constraint 172 512 5.3924 6.7405 13.4811 0.0919 Constraint 163 512 5.1731 6.4664 12.9328 0.0919 Constraint 365 581 3.9039 4.8799 9.7598 0.0917 Constraint 293 444 5.9992 7.4990 14.9980 0.0917 Constraint 274 476 6.2473 7.8092 15.6183 0.0917 Constraint 274 452 3.8542 4.8178 9.6355 0.0917 Constraint 243 581 5.5767 6.9708 13.9417 0.0917 Constraint 234 581 5.5613 6.9516 13.9032 0.0917 Constraint 229 581 4.4534 5.5668 11.1335 0.0917 Constraint 229 571 6.0997 7.6246 15.2493 0.0917 Constraint 195 544 5.1797 6.4747 12.9493 0.0917 Constraint 113 529 2.4164 3.0205 6.0411 0.0917 Constraint 66 520 5.9697 7.4621 14.9242 0.0917 Constraint 47 452 4.7469 5.9337 11.8674 0.0917 Constraint 40 571 6.2208 7.7760 15.5520 0.0917 Constraint 31 483 4.5124 5.6405 11.2809 0.0917 Constraint 22 571 3.6742 4.5927 9.1854 0.0917 Constraint 82 211 5.8219 7.2774 14.5547 0.0912 Constraint 82 374 4.8987 6.1234 12.2468 0.0910 Constraint 31 155 4.7599 5.9498 11.8996 0.0907 Constraint 132 544 4.7672 5.9590 11.9179 0.0906 Constraint 31 124 4.4326 5.5408 11.0815 0.0906 Constraint 220 382 4.4375 5.5469 11.0938 0.0900 Constraint 179 389 3.7115 4.6394 9.2788 0.0895 Constraint 3 243 4.9932 6.2415 12.4830 0.0895 Constraint 16 195 4.5297 5.6621 11.3242 0.0882 Constraint 31 417 5.0495 6.3119 12.6239 0.0879 Constraint 47 544 3.5018 4.3772 8.7544 0.0877 Constraint 16 220 5.0199 6.2749 12.5498 0.0877 Constraint 31 148 6.1612 7.7014 15.4029 0.0874 Constraint 342 469 4.5857 5.7321 11.4642 0.0872 Constraint 204 333 4.4170 5.5212 11.0424 0.0869 Constraint 124 282 5.4731 6.8414 13.6827 0.0869 Constraint 195 520 4.8062 6.0078 12.0156 0.0866 Constraint 186 365 5.5282 6.9102 13.8204 0.0866 Constraint 16 389 4.9411 6.1763 12.3527 0.0864 Constraint 179 311 4.9557 6.1946 12.3893 0.0859 Constraint 113 503 5.2062 6.5077 13.0154 0.0856 Constraint 403 581 5.9835 7.4794 14.9587 0.0854 Constraint 365 544 3.8226 4.7782 9.5564 0.0852 Constraint 140 342 5.4664 6.8330 13.6659 0.0851 Constraint 113 469 5.0691 6.3363 12.6727 0.0850 Constraint 102 469 4.7671 5.9589 11.9177 0.0850 Constraint 496 611 5.3298 6.6623 13.3245 0.0849 Constraint 503 581 4.8958 6.1197 12.2394 0.0846 Constraint 40 229 5.9152 7.3940 14.7880 0.0839 Constraint 186 302 5.5519 6.9399 13.8798 0.0839 Constraint 293 581 4.7901 5.9877 11.9753 0.0836 Constraint 102 483 5.7495 7.1869 14.3737 0.0834 Constraint 262 483 4.4740 5.5925 11.1851 0.0833 Constraint 327 581 6.3325 7.9156 15.8312 0.0832 Constraint 417 581 2.9089 3.6362 7.2723 0.0829 Constraint 155 452 5.7515 7.1894 14.3787 0.0826 Constraint 140 469 5.3862 6.7328 13.4656 0.0826 Constraint 113 461 4.8759 6.0949 12.1899 0.0826 Constraint 163 333 5.3013 6.6266 13.2533 0.0823 Constraint 47 220 5.3700 6.7125 13.4249 0.0822 Constraint 243 476 5.2613 6.5766 13.1532 0.0820 Constraint 16 403 5.1774 6.4718 12.9436 0.0819 Constraint 47 234 5.8970 7.3712 14.7424 0.0819 Constraint 11 417 5.1588 6.4485 12.8971 0.0818 Constraint 342 544 5.3321 6.6651 13.3303 0.0816 Constraint 40 537 4.5401 5.6752 11.3503 0.0815 Constraint 47 342 5.8441 7.3051 14.6102 0.0811 Constraint 113 544 5.5345 6.9181 13.8362 0.0808 Constraint 417 601 4.5242 5.6552 11.3104 0.0803 Constraint 140 444 6.1250 7.6562 15.3125 0.0800 Constraint 293 503 4.4038 5.5047 11.0095 0.0796 Constraint 319 552 5.0845 6.3556 12.7112 0.0796 Constraint 47 512 5.2017 6.5021 13.0042 0.0793 Constraint 262 444 3.6593 4.5741 9.1483 0.0792 Constraint 140 452 5.7074 7.1343 14.2685 0.0792 Constraint 483 552 5.1125 6.3906 12.7812 0.0786 Constraint 353 435 6.0055 7.5069 15.0137 0.0784 Constraint 374 611 5.3843 6.7304 13.4608 0.0784 Constraint 16 155 6.3275 7.9094 15.8188 0.0780 Constraint 186 382 5.4761 6.8451 13.6903 0.0780 Constraint 3 382 2.6578 3.3223 6.6446 0.0778 Constraint 140 483 5.4463 6.8078 13.6157 0.0777 Constraint 204 520 5.8843 7.3554 14.7108 0.0776 Constraint 31 132 5.6629 7.0786 14.1572 0.0773 Constraint 234 353 5.3487 6.6859 13.3718 0.0773 Constraint 234 435 4.8347 6.0434 12.0869 0.0772 Constraint 155 365 5.7068 7.1336 14.2671 0.0771 Constraint 22 417 5.2816 6.6020 13.2040 0.0770 Constraint 282 503 4.8496 6.0620 12.1240 0.0770 Constraint 211 382 4.8897 6.1122 12.2243 0.0764 Constraint 31 537 4.8920 6.1150 12.2300 0.0764 Constraint 102 274 5.9791 7.4739 14.9479 0.0764 Constraint 353 581 5.6161 7.0202 14.0403 0.0761 Constraint 311 520 5.1867 6.4833 12.9667 0.0760 Constraint 302 426 4.6382 5.7977 11.5955 0.0760 Constraint 47 520 5.6716 7.0896 14.1791 0.0755 Constraint 503 601 4.8487 6.0609 12.1219 0.0753 Constraint 374 591 5.1980 6.4975 12.9949 0.0751 Constraint 333 611 5.4365 6.7956 13.5913 0.0751 Constraint 179 333 5.5451 6.9314 13.8629 0.0750 Constraint 16 410 4.8638 6.0798 12.1595 0.0749 Constraint 140 410 4.4362 5.5453 11.0905 0.0748 Constraint 40 234 5.0320 6.2901 12.5801 0.0745 Constraint 3 74 4.6415 5.8018 11.6037 0.0740 Constraint 40 124 5.8210 7.2763 14.5525 0.0734 Constraint 3 82 5.6860 7.1074 14.2149 0.0732 Constraint 82 293 5.4926 6.8657 13.7315 0.0731 Constraint 211 403 5.2712 6.5891 13.1781 0.0729 Constraint 124 274 6.0326 7.5407 15.0815 0.0729 Constraint 155 529 5.4743 6.8429 13.6858 0.0729 Constraint 243 389 5.2737 6.5921 13.1842 0.0729 Constraint 234 389 3.5318 4.4147 8.8294 0.0729 Constraint 365 469 5.4234 6.7792 13.5585 0.0724 Constraint 47 140 4.5096 5.6370 11.2740 0.0722 Constraint 327 461 6.0895 7.6119 15.2239 0.0720 Constraint 186 452 5.9095 7.3869 14.7738 0.0719 Constraint 102 382 5.4841 6.8551 13.7102 0.0719 Constraint 89 395 4.9258 6.1573 12.3145 0.0714 Constraint 234 469 5.8957 7.3697 14.7393 0.0712 Constraint 16 469 5.4319 6.7898 13.5797 0.0711 Constraint 16 452 5.6766 7.0958 14.1915 0.0711 Constraint 262 426 4.5226 5.6533 11.3066 0.0708 Constraint 40 410 3.7664 4.7080 9.4159 0.0696 Constraint 22 186 5.4818 6.8523 13.7046 0.0696 Constraint 243 452 4.8939 6.1174 12.2347 0.0693 Constraint 163 302 4.1756 5.2195 10.4391 0.0693 Constraint 243 327 4.6049 5.7561 11.5122 0.0692 Constraint 11 113 5.8880 7.3600 14.7199 0.0689 Constraint 11 179 5.1268 6.4085 12.8171 0.0687 Constraint 483 544 5.2712 6.5889 13.1779 0.0683 Constraint 40 327 5.0450 6.3062 12.6125 0.0681 Constraint 74 552 4.6908 5.8636 11.7271 0.0675 Constraint 132 204 5.8067 7.2583 14.5167 0.0672 Constraint 102 195 4.7042 5.8803 11.7605 0.0672 Constraint 163 365 5.4825 6.8531 13.7063 0.0668 Constraint 31 186 5.2335 6.5418 13.0837 0.0668 Constraint 195 365 5.5159 6.8949 13.7898 0.0666 Constraint 327 496 5.5154 6.8942 13.7885 0.0664 Constraint 389 571 5.3907 6.7384 13.4767 0.0660 Constraint 172 435 5.2120 6.5151 13.0301 0.0660 Constraint 31 426 6.0167 7.5208 15.0417 0.0660 Constraint 140 302 5.5222 6.9028 13.8056 0.0659 Constraint 22 461 5.2708 6.5885 13.1770 0.0658 Constraint 66 374 5.4552 6.8190 13.6380 0.0658 Constraint 3 435 5.1854 6.4817 12.9635 0.0658 Constraint 229 435 5.0344 6.2930 12.5860 0.0653 Constraint 89 452 3.7560 4.6949 9.3899 0.0653 Constraint 327 544 5.4648 6.8310 13.6620 0.0650 Constraint 311 503 5.4721 6.8401 13.6802 0.0650 Constraint 229 365 4.2217 5.2772 10.5543 0.0650 Constraint 211 520 5.2380 6.5475 13.0950 0.0650 Constraint 140 333 5.7981 7.2476 14.4952 0.0650 Constraint 31 140 5.6913 7.1142 14.2284 0.0650 Constraint 82 327 5.4854 6.8567 13.7134 0.0649 Constraint 461 544 5.3121 6.6402 13.2803 0.0643 Constraint 243 461 5.2224 6.5280 13.0559 0.0642 Constraint 155 353 5.2487 6.5609 13.1217 0.0639 Constraint 311 581 5.1212 6.4015 12.8029 0.0639 Constraint 40 529 5.4492 6.8115 13.6230 0.0638 Constraint 172 365 5.1382 6.4228 12.8456 0.0638 Constraint 3 229 5.2731 6.5913 13.1827 0.0638 Constraint 66 601 5.3935 6.7419 13.4839 0.0636 Constraint 47 601 6.2523 7.8154 15.6308 0.0636 Constraint 395 552 4.8678 6.0847 12.1695 0.0634 Constraint 461 529 5.7895 7.2369 14.4737 0.0633 Constraint 89 293 4.4474 5.5593 11.1186 0.0629 Constraint 16 262 4.6119 5.7649 11.5298 0.0629 Constraint 211 395 4.1922 5.2402 10.4804 0.0628 Constraint 132 311 4.9345 6.1681 12.3362 0.0627 Constraint 195 469 5.0667 6.3334 12.6668 0.0627 Constraint 102 544 5.8872 7.3590 14.7180 0.0626 Constraint 234 452 4.9318 6.1648 12.3295 0.0625 Constraint 483 611 5.2850 6.6062 13.2124 0.0624 Constraint 140 544 5.3966 6.7458 13.4916 0.0622 Constraint 74 496 5.8977 7.3721 14.7441 0.0622 Constraint 102 186 5.2831 6.6039 13.2078 0.0620 Constraint 353 469 3.7826 4.7282 9.4564 0.0620 Constraint 57 220 4.9588 6.1985 12.3970 0.0619 Constraint 124 552 5.3250 6.6563 13.3126 0.0614 Constraint 444 552 4.0595 5.0744 10.1488 0.0613 Constraint 395 611 4.7857 5.9821 11.9642 0.0613 Constraint 16 282 4.3880 5.4850 10.9699 0.0612 Constraint 3 179 4.6806 5.8507 11.7015 0.0604 Constraint 179 483 5.4975 6.8719 13.7438 0.0604 Constraint 82 444 4.1129 5.1411 10.2823 0.0600 Constraint 47 179 5.0853 6.3566 12.7133 0.0599 Constraint 40 333 5.7036 7.1295 14.2590 0.0598 Constraint 311 417 4.7296 5.9120 11.8240 0.0596 Constraint 204 461 5.3762 6.7203 13.4406 0.0596 Constraint 11 410 5.3075 6.6343 13.2686 0.0594 Constraint 172 483 5.6292 7.0365 14.0730 0.0594 Constraint 274 435 4.8368 6.0460 12.0920 0.0589 Constraint 113 327 5.3158 6.6447 13.2895 0.0589 Constraint 102 327 5.1685 6.4606 12.9212 0.0589 Constraint 403 601 5.2759 6.5949 13.1897 0.0586 Constraint 148 374 5.0920 6.3650 12.7299 0.0584 Constraint 66 483 5.9968 7.4960 14.9920 0.0583 Constraint 40 444 5.6854 7.1067 14.2135 0.0583 Constraint 89 520 5.3520 6.6900 13.3801 0.0583 Constraint 211 469 4.7823 5.9779 11.9558 0.0580 Constraint 31 520 4.6461 5.8076 11.6152 0.0579 Constraint 262 461 5.0392 6.2990 12.5979 0.0578 Constraint 40 520 5.7710 7.2137 14.4274 0.0577 Constraint 22 195 5.2109 6.5137 13.0274 0.0574 Constraint 16 113 3.8055 4.7569 9.5139 0.0574 Constraint 47 327 4.7865 5.9831 11.9662 0.0573 Constraint 293 483 5.4328 6.7910 13.5820 0.0572 Constraint 57 211 5.7347 7.1684 14.3368 0.0572 Constraint 302 403 4.8845 6.1056 12.2113 0.0570 Constraint 282 461 5.6068 7.0085 14.0171 0.0569 Constraint 31 552 5.7570 7.1963 14.3926 0.0567 Constraint 74 476 5.6942 7.1178 14.2356 0.0565 Constraint 3 102 4.4764 5.5955 11.1910 0.0564 Constraint 496 601 5.1770 6.4713 12.9425 0.0564 Constraint 282 469 4.6899 5.8624 11.7248 0.0562 Constraint 47 591 4.5202 5.6503 11.3006 0.0560 Constraint 113 186 5.4783 6.8479 13.6958 0.0560 Constraint 274 591 4.7895 5.9868 11.9737 0.0554 Constraint 89 389 4.7336 5.9170 11.8340 0.0552 Constraint 82 389 6.0078 7.5097 15.0194 0.0552 Constraint 47 552 3.6575 4.5719 9.1438 0.0552 Constraint 11 124 5.4944 6.8680 13.7361 0.0551 Constraint 11 172 4.6903 5.8628 11.7256 0.0551 Constraint 47 537 5.0147 6.2684 12.5368 0.0549 Constraint 47 529 4.9235 6.1544 12.3089 0.0549 Constraint 132 552 5.6561 7.0701 14.1401 0.0544 Constraint 3 537 5.5496 6.9370 13.8739 0.0543 Constraint 82 333 4.8045 6.0056 12.0112 0.0541 Constraint 444 529 4.4496 5.5620 11.1239 0.0538 Constraint 66 529 5.2726 6.5908 13.1816 0.0536 Constraint 395 601 5.1170 6.3962 12.7924 0.0536 Constraint 389 611 5.6665 7.0831 14.1662 0.0536 Constraint 22 403 5.2330 6.5412 13.0824 0.0535 Constraint 102 302 5.4782 6.8478 13.6956 0.0531 Constraint 82 520 5.5184 6.8980 13.7960 0.0531 Constraint 113 234 5.5419 6.9274 13.8548 0.0530 Constraint 204 319 5.3905 6.7382 13.4763 0.0529 Constraint 172 333 4.4157 5.5197 11.0393 0.0529 Constraint 179 353 4.8241 6.0301 12.0603 0.0528 Constraint 311 601 5.4901 6.8626 13.7252 0.0527 Constraint 195 537 6.1375 7.6719 15.3438 0.0527 Constraint 22 444 4.1676 5.2095 10.4190 0.0516 Constraint 22 211 5.4687 6.8359 13.6718 0.0516 Constraint 172 496 4.1147 5.1434 10.2868 0.0516 Constraint 57 476 6.1859 7.7324 15.4648 0.0515 Constraint 57 469 4.5246 5.6558 11.3116 0.0515 Constraint 319 452 5.6748 7.0935 14.1870 0.0515 Constraint 3 234 5.4713 6.8391 13.6782 0.0515 Constraint 82 435 6.1643 7.7054 15.4108 0.0514 Constraint 195 333 4.7385 5.9232 11.8463 0.0513 Constraint 211 410 5.0003 6.2503 12.5007 0.0513 Constraint 179 512 4.1061 5.1326 10.2652 0.0513 Constraint 132 353 5.1944 6.4930 12.9859 0.0509 Constraint 124 417 4.9972 6.2465 12.4930 0.0506 Constraint 155 333 4.1527 5.1909 10.3817 0.0501 Constraint 327 552 4.8035 6.0044 12.0087 0.0500 Constraint 243 374 5.3370 6.6712 13.3425 0.0498 Constraint 220 327 3.7020 4.6275 9.2551 0.0498 Constraint 89 353 6.1328 7.6660 15.3319 0.0498 Constraint 82 452 5.4920 6.8650 13.7299 0.0498 Constraint 3 186 6.0206 7.5258 15.0515 0.0497 Constraint 3 132 4.2831 5.3538 10.7076 0.0496 Constraint 40 220 4.7953 5.9941 11.9881 0.0495 Constraint 327 512 6.1546 7.6933 15.3865 0.0494 Constraint 204 395 6.1290 7.6612 15.3224 0.0492 Constraint 274 503 3.9899 4.9874 9.9747 0.0488 Constraint 229 389 4.4761 5.5952 11.1903 0.0488 Constraint 47 571 3.8128 4.7660 9.5320 0.0488 Constraint 274 469 6.2357 7.7946 15.5892 0.0486 Constraint 274 461 5.4433 6.8042 13.6083 0.0486 Constraint 243 435 5.2962 6.6202 13.2404 0.0486 Constraint 31 435 6.3696 7.9620 15.9240 0.0486 Constraint 234 417 5.1942 6.4928 12.9856 0.0482 Constraint 47 124 5.9000 7.3750 14.7500 0.0480 Constraint 11 353 4.7740 5.9675 11.9349 0.0480 Constraint 3 365 4.1652 5.2065 10.4131 0.0480 Constraint 3 353 5.5048 6.8810 13.7621 0.0480 Constraint 302 417 5.1019 6.3773 12.7546 0.0480 Constraint 469 561 5.7441 7.1801 14.3602 0.0472 Constraint 382 571 4.0812 5.1015 10.2030 0.0470 Constraint 327 417 5.1959 6.4949 12.9899 0.0470 Constraint 353 461 3.7500 4.6875 9.3750 0.0470 Constraint 469 537 5.2057 6.5071 13.0142 0.0469 Constraint 503 591 5.1282 6.4103 12.8206 0.0466 Constraint 74 512 5.3511 6.6889 13.3777 0.0465 Constraint 11 403 4.5456 5.6820 11.3641 0.0462 Constraint 452 591 4.6297 5.7872 11.5743 0.0462 Constraint 11 132 5.3233 6.6541 13.3082 0.0457 Constraint 132 469 6.0975 7.6219 15.2438 0.0455 Constraint 124 469 5.5721 6.9652 13.9304 0.0455 Constraint 74 483 5.1003 6.3753 12.7507 0.0455 Constraint 353 452 6.1437 7.6796 15.3593 0.0455 Constraint 311 512 5.3792 6.7240 13.4479 0.0454 Constraint 293 476 4.3659 5.4573 10.9147 0.0452 Constraint 22 382 3.9510 4.9388 9.8776 0.0452 Constraint 155 503 5.7408 7.1760 14.3520 0.0452 Constraint 16 132 4.4908 5.6135 11.2270 0.0451 Constraint 461 591 4.2497 5.3121 10.6242 0.0451 Constraint 16 537 5.6083 7.0104 14.0208 0.0450 Constraint 374 537 5.6919 7.1149 14.2298 0.0447 Constraint 57 571 5.1193 6.3991 12.7983 0.0447 Constraint 195 319 5.8998 7.3747 14.7494 0.0445 Constraint 461 552 4.6756 5.8445 11.6891 0.0438 Constraint 426 591 5.1942 6.4928 12.9856 0.0438 Constraint 229 537 5.2950 6.6188 13.2376 0.0433 Constraint 229 529 3.2211 4.0264 8.0527 0.0433 Constraint 220 520 5.9239 7.4049 14.8098 0.0433 Constraint 195 581 6.1792 7.7240 15.4480 0.0433 Constraint 195 512 5.4007 6.7508 13.5017 0.0433 Constraint 195 503 5.1332 6.4165 12.8331 0.0433 Constraint 195 302 6.0206 7.5257 15.0515 0.0433 Constraint 186 581 5.3083 6.6354 13.2708 0.0433 Constraint 186 537 5.1817 6.4772 12.9543 0.0433 Constraint 22 140 5.9446 7.4308 14.8615 0.0433 Constraint 16 520 5.6760 7.0950 14.1899 0.0433 Constraint 16 503 5.6909 7.1137 14.2274 0.0433 Constraint 16 496 5.5690 6.9613 13.9226 0.0433 Constraint 11 520 4.3117 5.3896 10.7792 0.0433 Constraint 3 520 5.1756 6.4695 12.9391 0.0433 Constraint 282 601 4.9377 6.1721 12.3442 0.0432 Constraint 204 410 4.2086 5.2607 10.5214 0.0431 Constraint 243 552 5.4676 6.8345 13.6691 0.0429 Constraint 255 529 4.3118 5.3897 10.7794 0.0426 Constraint 22 529 5.1676 6.4595 12.9191 0.0424 Constraint 255 333 5.9139 7.3924 14.7848 0.0422 Constraint 311 571 5.1336 6.4170 12.8340 0.0422 Constraint 140 353 5.8000 7.2500 14.5000 0.0422 Constraint 333 601 6.1198 7.6497 15.2994 0.0417 Constraint 132 537 4.4384 5.5479 11.0959 0.0417 Constraint 74 333 5.0717 6.3396 12.6791 0.0415 Constraint 40 512 5.1391 6.4239 12.8477 0.0414 Constraint 204 389 3.9699 4.9624 9.9248 0.0411 Constraint 140 319 4.4150 5.5188 11.0376 0.0411 Constraint 3 403 4.6634 5.8292 11.6585 0.0407 Constraint 172 537 5.0670 6.3337 12.6674 0.0407 Constraint 186 333 5.0512 6.3139 12.6279 0.0405 Constraint 274 581 5.0510 6.3138 12.6275 0.0402 Constraint 186 342 5.8650 7.3313 14.6625 0.0399 Constraint 89 186 5.2677 6.5846 13.1692 0.0396 Constraint 40 211 5.4237 6.7797 13.5594 0.0395 Constraint 262 512 4.7923 5.9904 11.9808 0.0389 Constraint 66 552 5.9135 7.3919 14.7837 0.0389 Constraint 3 544 4.3568 5.4460 10.8919 0.0389 Constraint 3 529 4.8903 6.1129 12.2258 0.0389 Constraint 148 302 4.7598 5.9497 11.8994 0.0387 Constraint 16 186 5.2506 6.5632 13.1264 0.0387 Constraint 319 537 3.7134 4.6417 9.2834 0.0383 Constraint 255 611 3.9111 4.8888 9.7776 0.0383 Constraint 452 611 4.9490 6.1863 12.3726 0.0380 Constraint 327 435 5.1518 6.4398 12.8795 0.0380 Constraint 302 444 6.3449 7.9311 15.8622 0.0380 Constraint 16 274 5.4403 6.8003 13.6007 0.0380 Constraint 89 529 4.4747 5.5934 11.1867 0.0379 Constraint 82 503 6.2765 7.8456 15.6912 0.0379 Constraint 74 503 3.9414 4.9268 9.8535 0.0379 Constraint 3 172 5.7973 7.2466 14.4933 0.0377 Constraint 22 537 5.1879 6.4849 12.9698 0.0375 Constraint 327 537 5.8061 7.2576 14.5151 0.0374 Constraint 255 365 4.5183 5.6479 11.2959 0.0374 Constraint 22 102 4.5430 5.6788 11.3575 0.0370 Constraint 274 512 5.1691 6.4614 12.9229 0.0368 Constraint 353 591 5.3262 6.6578 13.3156 0.0367 Constraint 262 601 4.1747 5.2184 10.4368 0.0364 Constraint 16 140 5.6033 7.0041 14.0082 0.0363 Constraint 255 403 4.6909 5.8636 11.7273 0.0362 Constraint 255 581 4.6003 5.7503 11.5007 0.0362 Constraint 333 483 5.3899 6.7374 13.4747 0.0361 Constraint 179 520 4.5048 5.6310 11.2619 0.0352 Constraint 163 353 2.9161 3.6451 7.2902 0.0352 Constraint 124 476 6.3264 7.9081 15.8161 0.0352 Constraint 89 476 6.1822 7.7277 15.4554 0.0352 Constraint 57 461 5.7634 7.2042 14.4085 0.0352 Constraint 40 426 5.6970 7.1212 14.2425 0.0352 Constraint 452 601 6.2042 7.7553 15.5106 0.0352 Constraint 89 302 6.0088 7.5110 15.0219 0.0352 Constraint 293 435 5.6450 7.0562 14.1125 0.0351 Constraint 132 229 4.8551 6.0689 12.1378 0.0350 Constraint 327 452 5.6922 7.1152 14.2305 0.0350 Constraint 132 444 5.4909 6.8636 13.7273 0.0349 Constraint 327 503 5.9608 7.4510 14.9020 0.0348 Constraint 274 483 4.7444 5.9305 11.8609 0.0344 Constraint 57 483 5.1157 6.3947 12.7893 0.0344 Constraint 11 155 5.7204 7.1505 14.3010 0.0342 Constraint 529 611 5.3727 6.7159 13.4318 0.0335 Constraint 520 611 5.7082 7.1353 14.2706 0.0335 Constraint 132 529 4.8985 6.1231 12.2462 0.0330 Constraint 124 544 5.0416 6.3019 12.6039 0.0330 Constraint 282 435 5.1181 6.3976 12.7952 0.0326 Constraint 179 496 5.7187 7.1483 14.2967 0.0326 Constraint 172 571 6.3690 7.9612 15.9224 0.0326 Constraint 163 503 5.3494 6.6867 13.3734 0.0326 Constraint 163 496 6.0083 7.5104 15.0207 0.0326 Constraint 155 571 5.9647 7.4559 14.9118 0.0326 Constraint 155 544 5.7191 7.1489 14.2977 0.0326 Constraint 155 537 5.9553 7.4441 14.8882 0.0326 Constraint 47 581 5.5912 6.9890 13.9781 0.0326 Constraint 22 204 4.7653 5.9566 11.9132 0.0326 Constraint 3 124 5.5625 6.9531 13.9061 0.0325 Constraint 342 483 5.4406 6.8008 13.6016 0.0324 Constraint 444 544 5.5369 6.9212 13.8424 0.0320 Constraint 57 444 4.6948 5.8685 11.7369 0.0318 Constraint 293 403 4.1206 5.1508 10.3016 0.0316 Constraint 220 417 4.5340 5.6674 11.3349 0.0316 Constraint 195 353 5.9744 7.4680 14.9361 0.0316 Constraint 163 374 4.5196 5.6496 11.2991 0.0316 Constraint 31 611 3.6424 4.5530 9.1061 0.0315 Constraint 311 591 5.5204 6.9005 13.8011 0.0315 Constraint 353 426 4.1879 5.2349 10.4698 0.0314 Constraint 124 293 5.4641 6.8302 13.6603 0.0314 Constraint 262 591 6.0150 7.5187 15.0374 0.0313 Constraint 3 483 4.5565 5.6956 11.3913 0.0310 Constraint 11 89 5.4998 6.8747 13.7495 0.0310 Constraint 444 601 5.1983 6.4978 12.9957 0.0307 Constraint 140 293 4.5557 5.6946 11.3892 0.0306 Constraint 3 155 4.7292 5.9116 11.8231 0.0306 Constraint 365 435 3.5326 4.4157 8.8315 0.0306 Constraint 403 611 5.2419 6.5523 13.1046 0.0305 Constraint 319 444 4.8752 6.0940 12.1879 0.0303 Constraint 311 444 3.5295 4.4119 8.8238 0.0303 Constraint 113 537 4.8365 6.0457 12.0913 0.0303 Constraint 74 591 5.9756 7.4695 14.9391 0.0303 Constraint 57 591 4.3716 5.4645 10.9291 0.0303 Constraint 327 483 5.6028 7.0035 14.0070 0.0299 Constraint 262 561 5.7054 7.1317 14.2634 0.0299 Constraint 262 552 5.1505 6.4381 12.8763 0.0299 Constraint 262 529 3.5234 4.4043 8.8086 0.0299 Constraint 255 552 4.7884 5.9856 11.9711 0.0299 Constraint 179 365 5.7434 7.1792 14.3584 0.0295 Constraint 148 544 5.4813 6.8516 13.7031 0.0292 Constraint 148 529 5.6873 7.1091 14.2182 0.0292 Constraint 132 561 6.2808 7.8510 15.7021 0.0292 Constraint 195 311 4.0344 5.0430 10.0859 0.0292 Constraint 204 452 4.4079 5.5099 11.0198 0.0292 Constraint 148 444 6.3605 7.9506 15.9012 0.0292 Constraint 132 476 6.2472 7.8090 15.6180 0.0292 Constraint 66 469 5.8277 7.2847 14.5694 0.0292 Constraint 47 444 6.3712 7.9640 15.9279 0.0292 Constraint 31 452 5.3859 6.7323 13.4647 0.0292 Constraint 31 444 4.6841 5.8552 11.7103 0.0292 Constraint 262 581 5.4489 6.8111 13.6222 0.0287 Constraint 311 552 4.0754 5.0942 10.1885 0.0287 Constraint 132 581 3.6486 4.5608 9.1215 0.0284 Constraint 22 435 5.9774 7.4718 14.9436 0.0284 Constraint 11 426 4.8414 6.0518 12.1036 0.0284 Constraint 11 229 5.6289 7.0361 14.0722 0.0284 Constraint 179 342 4.5393 5.6742 11.3483 0.0283 Constraint 124 204 5.3397 6.6746 13.3493 0.0282 Constraint 342 417 4.2397 5.2996 10.5992 0.0282 Constraint 113 561 4.4179 5.5224 11.0448 0.0281 Constraint 353 611 3.7723 4.7153 9.4306 0.0280 Constraint 353 601 4.2921 5.3651 10.7302 0.0280 Constraint 327 611 3.7537 4.6921 9.3843 0.0280 Constraint 302 537 4.9989 6.2487 12.4973 0.0280 Constraint 302 512 6.1421 7.6776 15.3552 0.0280 Constraint 293 611 6.2620 7.8275 15.6550 0.0280 Constraint 282 611 5.6643 7.0804 14.1608 0.0280 Constraint 102 353 5.3927 6.7409 13.4819 0.0280 Constraint 243 611 5.7797 7.2247 14.4493 0.0278 Constraint 234 611 5.2655 6.5819 13.1639 0.0278 Constraint 22 319 6.2226 7.7783 15.5565 0.0277 Constraint 66 302 3.9912 4.9890 9.9780 0.0271 Constraint 140 365 5.5158 6.8947 13.7895 0.0268 Constraint 11 537 4.9148 6.1435 12.2871 0.0266 Constraint 47 611 5.9164 7.3955 14.7909 0.0264 Constraint 302 496 5.3444 6.6805 13.3611 0.0263 Constraint 3 591 5.1972 6.4966 12.9931 0.0261 Constraint 57 426 5.6247 7.0309 14.0619 0.0259 Constraint 319 601 5.5147 6.8934 13.7869 0.0256 Constraint 22 124 3.5930 4.4913 8.9826 0.0256 Constraint 469 552 4.9492 6.1865 12.3730 0.0255 Constraint 40 140 5.8663 7.3328 14.6657 0.0254 Constraint 293 591 5.4204 6.7755 13.5509 0.0253 Constraint 47 302 5.3576 6.6970 13.3940 0.0252 Constraint 102 293 4.7994 5.9993 11.9985 0.0249 Constraint 31 319 4.8572 6.0715 12.1429 0.0249 Constraint 3 342 4.1927 5.2408 10.4816 0.0249 Constraint 3 220 4.9738 6.2173 12.4345 0.0249 Constraint 3 211 6.0722 7.5902 15.1805 0.0249 Constraint 3 204 3.4827 4.3533 8.7067 0.0249 Constraint 22 395 5.4249 6.7811 13.5623 0.0247 Constraint 374 444 3.7907 4.7383 9.4766 0.0247 Constraint 353 476 5.4735 6.8418 13.6836 0.0247 Constraint 333 461 5.3182 6.6477 13.2954 0.0243 Constraint 333 444 3.6861 4.6076 9.2153 0.0243 Constraint 311 476 3.6723 4.5904 9.1807 0.0243 Constraint 124 537 5.5275 6.9094 13.8188 0.0243 Constraint 89 581 5.4995 6.8744 13.7488 0.0243 Constraint 11 601 4.9691 6.2113 12.4227 0.0239 Constraint 234 444 3.9060 4.8825 9.7649 0.0236 Constraint 374 544 5.0572 6.3215 12.6429 0.0235 Constraint 47 435 5.8941 7.3677 14.7353 0.0235 Constraint 255 601 4.8134 6.0168 12.0335 0.0233 Constraint 255 591 4.9351 6.1688 12.3377 0.0233 Constraint 57 365 5.2552 6.5690 13.1379 0.0226 Constraint 140 461 6.2506 7.8132 15.6264 0.0226 Constraint 31 333 6.1345 7.6681 15.3362 0.0226 Constraint 113 483 5.8890 7.3612 14.7224 0.0226 Constraint 186 483 4.6597 5.8246 11.6492 0.0225 Constraint 31 461 5.7599 7.1999 14.3997 0.0225 Constraint 22 452 5.6960 7.1200 14.2401 0.0225 Constraint 16 461 6.3068 7.8835 15.7669 0.0225 Constraint 11 452 5.7980 7.2475 14.4951 0.0225 Constraint 11 444 3.8883 4.8604 9.7208 0.0225 Constraint 11 435 5.4900 6.8625 13.7251 0.0225 Constraint 3 452 5.0549 6.3187 12.6373 0.0225 Constraint 3 444 5.8098 7.2623 14.5246 0.0225 Constraint 243 601 5.5006 6.8758 13.7516 0.0220 Constraint 211 601 3.9595 4.9494 9.8988 0.0220 Constraint 243 365 5.1076 6.3845 12.7690 0.0218 Constraint 89 496 6.2550 7.8188 15.6376 0.0218 Constraint 262 520 5.9441 7.4301 14.8601 0.0217 Constraint 262 503 5.0568 6.3210 12.6421 0.0217 Constraint 220 512 5.7583 7.1979 14.3957 0.0217 Constraint 220 503 6.1363 7.6703 15.3406 0.0217 Constraint 211 503 4.0205 5.0256 10.0512 0.0217 Constraint 211 496 5.9024 7.3781 14.7561 0.0217 Constraint 172 581 5.6375 7.0469 14.0938 0.0217 Constraint 163 581 5.3083 6.6354 13.2708 0.0217 Constraint 89 483 6.3994 7.9993 15.9985 0.0217 Constraint 11 262 6.2980 7.8724 15.7449 0.0217 Constraint 503 611 4.6992 5.8740 11.7480 0.0216 Constraint 186 353 4.0964 5.1205 10.2411 0.0213 Constraint 179 327 4.7896 5.9870 11.9741 0.0213 Constraint 163 327 4.1019 5.1273 10.2547 0.0213 Constraint 163 319 5.2101 6.5126 13.0253 0.0213 Constraint 155 327 5.6390 7.0488 14.0976 0.0213 Constraint 274 601 5.9287 7.4109 14.8217 0.0212 Constraint 353 571 5.9323 7.4154 14.8308 0.0211 Constraint 342 561 4.5473 5.6841 11.3682 0.0211 Constraint 163 552 5.6445 7.0557 14.1113 0.0211 Constraint 82 552 4.8624 6.0780 12.1561 0.0211 Constraint 255 342 4.4312 5.5390 11.0780 0.0206 Constraint 302 581 5.8279 7.2849 14.5698 0.0206 Constraint 302 571 4.0620 5.0775 10.1550 0.0206 Constraint 11 102 4.8932 6.1164 12.2329 0.0202 Constraint 282 544 6.1194 7.6492 15.2984 0.0201 Constraint 262 571 5.1204 6.4005 12.8010 0.0201 Constraint 211 561 5.0106 6.2632 12.5264 0.0194 Constraint 113 571 4.8667 6.0833 12.1667 0.0194 Constraint 31 327 5.1542 6.4428 12.8856 0.0194 Constraint 274 417 4.7309 5.9136 11.8273 0.0190 Constraint 172 544 5.7347 7.1683 14.3366 0.0190 Constraint 31 591 5.7446 7.1807 14.3615 0.0190 Constraint 31 512 4.9824 6.2280 12.4561 0.0190 Constraint 22 512 4.8640 6.0800 12.1600 0.0190 Constraint 333 544 5.4504 6.8130 13.6261 0.0184 Constraint 333 537 4.2144 5.2679 10.5359 0.0184 Constraint 57 537 4.4876 5.6094 11.2189 0.0181 Constraint 282 476 5.8269 7.2836 14.5673 0.0174 Constraint 140 561 6.2607 7.8259 15.6518 0.0174 Constraint 140 552 5.8976 7.3720 14.7440 0.0174 Constraint 66 581 6.0092 7.5115 15.0231 0.0174 Constraint 31 601 6.1968 7.7461 15.4921 0.0174 Constraint 22 601 5.1110 6.3888 12.7776 0.0174 Constraint 365 444 5.3568 6.6960 13.3920 0.0172 Constraint 16 89 4.4443 5.5553 11.1107 0.0168 Constraint 66 327 4.6028 5.7536 11.5071 0.0168 Constraint 57 327 4.3955 5.4943 10.9887 0.0168 Constraint 89 333 6.2476 7.8095 15.6190 0.0163 Constraint 74 469 5.8794 7.3492 14.6984 0.0163 Constraint 74 353 5.5644 6.9555 13.9110 0.0163 Constraint 57 561 5.7648 7.2060 14.4121 0.0163 Constraint 47 561 6.0696 7.5870 15.1739 0.0163 Constraint 31 544 5.7779 7.2224 14.4448 0.0163 Constraint 31 529 5.2946 6.6182 13.2364 0.0163 Constraint 11 529 4.7529 5.9411 11.8823 0.0163 Constraint 195 561 6.2847 7.8558 15.7117 0.0160 Constraint 186 561 4.2437 5.3047 10.6093 0.0160 Constraint 179 601 6.3651 7.9564 15.9128 0.0160 Constraint 179 561 5.0230 6.2788 12.5576 0.0160 Constraint 140 435 5.0917 6.3646 12.7291 0.0160 Constraint 102 591 5.0610 6.3262 12.6524 0.0160 Constraint 82 581 5.4602 6.8252 13.6505 0.0160 Constraint 74 581 4.7125 5.8906 11.7812 0.0160 Constraint 57 529 5.0669 6.3336 12.6672 0.0160 Constraint 47 353 3.9558 4.9447 9.8895 0.0160 Constraint 40 552 5.7468 7.1835 14.3671 0.0160 Constraint 40 353 6.2211 7.7763 15.5527 0.0160 Constraint 22 374 6.0158 7.5198 15.0396 0.0160 Constraint 16 529 4.0435 5.0543 10.1087 0.0160 Constraint 11 461 6.3765 7.9706 15.9411 0.0160 Constraint 186 512 4.8589 6.0736 12.1472 0.0160 Constraint 255 537 4.5465 5.6831 11.3662 0.0156 Constraint 243 520 5.9826 7.4782 14.9564 0.0155 Constraint 74 452 4.9758 6.2197 12.4395 0.0155 Constraint 3 552 5.1080 6.3851 12.7701 0.0155 Constraint 410 611 6.3344 7.9180 15.8359 0.0152 Constraint 410 601 4.1029 5.1287 10.2573 0.0152 Constraint 282 591 5.1553 6.4441 12.8882 0.0152 Constraint 262 611 6.1410 7.6763 15.3525 0.0152 Constraint 66 611 6.3681 7.9602 15.9204 0.0152 Constraint 40 611 3.6495 4.5618 9.1237 0.0152 Constraint 16 611 6.1122 7.6403 15.2805 0.0152 Constraint 16 591 6.0905 7.6131 15.2262 0.0152 Constraint 11 611 3.5346 4.4182 8.8364 0.0152 Constraint 11 591 2.8660 3.5825 7.1649 0.0152 Constraint 16 342 5.4807 6.8508 13.7016 0.0150 Constraint 16 333 3.8259 4.7824 9.5648 0.0150 Constraint 293 552 5.3036 6.6294 13.2589 0.0150 Constraint 282 581 4.7629 5.9536 11.9073 0.0150 Constraint 243 496 5.2446 6.5557 13.1115 0.0145 Constraint 342 426 4.6537 5.8171 11.6343 0.0142 Constraint 274 389 6.0717 7.5896 15.1793 0.0142 Constraint 333 512 4.9460 6.1825 12.3650 0.0141 Constraint 274 444 6.2637 7.8297 15.6594 0.0130 Constraint 211 302 4.8030 6.0038 12.0075 0.0130 Constraint 74 601 4.1991 5.2489 10.4978 0.0130 Constraint 282 537 5.9382 7.4228 14.8456 0.0126 Constraint 274 611 6.2155 7.7694 15.5388 0.0126 Constraint 234 544 4.7410 5.9262 11.8524 0.0126 Constraint 220 529 6.1195 7.6494 15.2988 0.0126 Constraint 211 611 6.1270 7.6588 15.3175 0.0126 Constraint 140 374 3.9558 4.9447 9.8895 0.0126 Constraint 40 435 6.2870 7.8587 15.7174 0.0123 Constraint 220 365 5.8889 7.3611 14.7221 0.0109 Constraint 3 601 6.3108 7.8885 15.7771 0.0109 Constraint 333 561 6.2733 7.8416 15.6832 0.0103 Constraint 113 435 3.7785 4.7231 9.4462 0.0103 Constraint 89 611 5.6406 7.0507 14.1015 0.0103 Constraint 16 552 4.1498 5.1873 10.3746 0.0103 Constraint 353 444 4.3284 5.4105 10.8210 0.0101 Constraint 302 483 3.7181 4.6476 9.2953 0.0101 Constraint 302 476 5.6024 7.0030 14.0060 0.0101 Constraint 211 417 4.5630 5.7038 11.4075 0.0101 Constraint 82 611 5.2000 6.5001 13.0001 0.0101 Constraint 57 611 6.3086 7.8858 15.7716 0.0101 Constraint 16 483 5.4471 6.8089 13.6179 0.0101 Constraint 327 601 3.9356 4.9195 9.8390 0.0093 Constraint 262 365 5.5183 6.8979 13.7957 0.0093 Constraint 243 591 6.1240 7.6550 15.3099 0.0093 Constraint 234 601 6.0495 7.5619 15.1238 0.0093 Constraint 229 601 5.9723 7.4654 14.9307 0.0093 Constraint 229 374 6.1596 7.6994 15.3989 0.0093 Constraint 220 611 6.2344 7.7930 15.5859 0.0093 Constraint 220 601 2.6737 3.3421 6.6843 0.0093 Constraint 211 591 3.2355 4.0443 8.0887 0.0093 Constraint 211 552 6.0623 7.5779 15.1559 0.0093 Constraint 204 601 5.7975 7.2468 14.4937 0.0093 Constraint 195 601 3.8031 4.7539 9.5078 0.0093 Constraint 186 601 5.5076 6.8846 13.7691 0.0093 Constraint 172 374 5.7757 7.2196 14.4393 0.0093 Constraint 3 163 3.9691 4.9613 9.9227 0.0093 Constraint 148 537 5.3591 6.6988 13.3977 0.0087 Constraint 140 537 6.2066 7.7583 15.5165 0.0087 Constraint 82 512 3.6479 4.5599 9.1198 0.0087 Constraint 66 444 5.9918 7.4897 14.9795 0.0087 Constraint 57 302 4.9313 6.1642 12.3283 0.0087 Constraint 22 327 3.8886 4.8608 9.7216 0.0087 Constraint 452 537 4.6405 5.8007 11.6014 0.0081 Constraint 302 552 6.2299 7.7874 15.5747 0.0081 Constraint 302 544 6.2319 7.7898 15.5796 0.0081 Constraint 274 571 5.5024 6.8780 13.7559 0.0081 Constraint 274 561 5.5024 6.8780 13.7559 0.0081 Constraint 274 552 6.2534 7.8168 15.6336 0.0081 Constraint 274 544 6.3292 7.9115 15.8231 0.0081 Constraint 274 537 5.5992 6.9990 13.9980 0.0081 Constraint 262 537 5.0032 6.2540 12.5079 0.0081 Constraint 234 571 5.7547 7.1933 14.3867 0.0081 Constraint 163 293 4.4847 5.6058 11.2117 0.0081 Constraint 132 302 5.2894 6.6117 13.2235 0.0081 Constraint 74 327 4.9563 6.1954 12.3908 0.0081 Constraint 57 333 4.0891 5.1113 10.2227 0.0081 Constraint 113 601 6.0526 7.5658 15.1315 0.0075 Constraint 255 571 4.7235 5.9043 11.8086 0.0075 Constraint 255 544 3.6329 4.5411 9.0822 0.0075 Constraint 342 435 4.4792 5.5990 11.1980 0.0071 Constraint 333 469 5.8918 7.3648 14.7295 0.0071 Constraint 293 469 4.8889 6.1111 12.2222 0.0071 Constraint 211 365 5.9692 7.4615 14.9231 0.0071 Constraint 179 319 5.4916 6.8644 13.7289 0.0071 Constraint 124 319 6.1498 7.6872 15.3745 0.0071 Constraint 31 571 5.2276 6.5345 13.0691 0.0071 Constraint 113 417 6.2134 7.7667 15.5335 0.0052 Constraint 22 520 5.3176 6.6470 13.2939 0.0052 Constraint 3 571 6.0157 7.5197 15.0393 0.0052 Constraint 601 611 0.8000 1.0000 2.0000 0.0000 Constraint 591 611 0.8000 1.0000 2.0000 0.0000 Constraint 591 601 0.8000 1.0000 2.0000 0.0000 Constraint 581 611 0.8000 1.0000 2.0000 0.0000 Constraint 581 601 0.8000 1.0000 2.0000 0.0000 Constraint 581 591 0.8000 1.0000 2.0000 0.0000 Constraint 571 611 0.8000 1.0000 2.0000 0.0000 Constraint 571 601 0.8000 1.0000 2.0000 0.0000 Constraint 571 591 0.8000 1.0000 2.0000 0.0000 Constraint 571 581 0.8000 1.0000 2.0000 0.0000 Constraint 561 611 0.8000 1.0000 2.0000 0.0000 Constraint 561 601 0.8000 1.0000 2.0000 0.0000 Constraint 561 591 0.8000 1.0000 2.0000 0.0000 Constraint 561 581 0.8000 1.0000 2.0000 0.0000 Constraint 561 571 0.8000 1.0000 2.0000 0.0000 Constraint 552 611 0.8000 1.0000 2.0000 0.0000 Constraint 552 601 0.8000 1.0000 2.0000 0.0000 Constraint 552 591 0.8000 1.0000 2.0000 0.0000 Constraint 552 581 0.8000 1.0000 2.0000 0.0000 Constraint 552 571 0.8000 1.0000 2.0000 0.0000 Constraint 552 561 0.8000 1.0000 2.0000 0.0000 Constraint 544 611 0.8000 1.0000 2.0000 0.0000 Constraint 544 601 0.8000 1.0000 2.0000 0.0000 Constraint 544 591 0.8000 1.0000 2.0000 0.0000 Constraint 544 581 0.8000 1.0000 2.0000 0.0000 Constraint 544 571 0.8000 1.0000 2.0000 0.0000 Constraint 544 561 0.8000 1.0000 2.0000 0.0000 Constraint 544 552 0.8000 1.0000 2.0000 0.0000 Constraint 537 611 0.8000 1.0000 2.0000 0.0000 Constraint 537 601 0.8000 1.0000 2.0000 0.0000 Constraint 537 591 0.8000 1.0000 2.0000 0.0000 Constraint 537 581 0.8000 1.0000 2.0000 0.0000 Constraint 537 571 0.8000 1.0000 2.0000 0.0000 Constraint 537 561 0.8000 1.0000 2.0000 0.0000 Constraint 537 552 0.8000 1.0000 2.0000 0.0000 Constraint 537 544 0.8000 1.0000 2.0000 0.0000 Constraint 529 601 0.8000 1.0000 2.0000 0.0000 Constraint 529 591 0.8000 1.0000 2.0000 0.0000 Constraint 529 581 0.8000 1.0000 2.0000 0.0000 Constraint 529 571 0.8000 1.0000 2.0000 0.0000 Constraint 529 561 0.8000 1.0000 2.0000 0.0000 Constraint 529 552 0.8000 1.0000 2.0000 0.0000 Constraint 529 544 0.8000 1.0000 2.0000 0.0000 Constraint 529 537 0.8000 1.0000 2.0000 0.0000 Constraint 520 581 0.8000 1.0000 2.0000 0.0000 Constraint 520 571 0.8000 1.0000 2.0000 0.0000 Constraint 520 561 0.8000 1.0000 2.0000 0.0000 Constraint 520 552 0.8000 1.0000 2.0000 0.0000 Constraint 520 544 0.8000 1.0000 2.0000 0.0000 Constraint 520 537 0.8000 1.0000 2.0000 0.0000 Constraint 520 529 0.8000 1.0000 2.0000 0.0000 Constraint 512 601 0.8000 1.0000 2.0000 0.0000 Constraint 512 571 0.8000 1.0000 2.0000 0.0000 Constraint 512 561 0.8000 1.0000 2.0000 0.0000 Constraint 512 552 0.8000 1.0000 2.0000 0.0000 Constraint 512 544 0.8000 1.0000 2.0000 0.0000 Constraint 512 537 0.8000 1.0000 2.0000 0.0000 Constraint 512 529 0.8000 1.0000 2.0000 0.0000 Constraint 512 520 0.8000 1.0000 2.0000 0.0000 Constraint 503 561 0.8000 1.0000 2.0000 0.0000 Constraint 503 552 0.8000 1.0000 2.0000 0.0000 Constraint 503 544 0.8000 1.0000 2.0000 0.0000 Constraint 503 537 0.8000 1.0000 2.0000 0.0000 Constraint 503 529 0.8000 1.0000 2.0000 0.0000 Constraint 503 520 0.8000 1.0000 2.0000 0.0000 Constraint 503 512 0.8000 1.0000 2.0000 0.0000 Constraint 496 552 0.8000 1.0000 2.0000 0.0000 Constraint 496 544 0.8000 1.0000 2.0000 0.0000 Constraint 496 537 0.8000 1.0000 2.0000 0.0000 Constraint 496 529 0.8000 1.0000 2.0000 0.0000 Constraint 496 520 0.8000 1.0000 2.0000 0.0000 Constraint 496 512 0.8000 1.0000 2.0000 0.0000 Constraint 496 503 0.8000 1.0000 2.0000 0.0000 Constraint 483 537 0.8000 1.0000 2.0000 0.0000 Constraint 483 529 0.8000 1.0000 2.0000 0.0000 Constraint 483 520 0.8000 1.0000 2.0000 0.0000 Constraint 483 512 0.8000 1.0000 2.0000 0.0000 Constraint 483 503 0.8000 1.0000 2.0000 0.0000 Constraint 483 496 0.8000 1.0000 2.0000 0.0000 Constraint 476 529 0.8000 1.0000 2.0000 0.0000 Constraint 476 520 0.8000 1.0000 2.0000 0.0000 Constraint 476 512 0.8000 1.0000 2.0000 0.0000 Constraint 476 503 0.8000 1.0000 2.0000 0.0000 Constraint 476 496 0.8000 1.0000 2.0000 0.0000 Constraint 476 483 0.8000 1.0000 2.0000 0.0000 Constraint 469 520 0.8000 1.0000 2.0000 0.0000 Constraint 469 512 0.8000 1.0000 2.0000 0.0000 Constraint 469 503 0.8000 1.0000 2.0000 0.0000 Constraint 469 496 0.8000 1.0000 2.0000 0.0000 Constraint 469 483 0.8000 1.0000 2.0000 0.0000 Constraint 469 476 0.8000 1.0000 2.0000 0.0000 Constraint 461 520 0.8000 1.0000 2.0000 0.0000 Constraint 461 512 0.8000 1.0000 2.0000 0.0000 Constraint 461 503 0.8000 1.0000 2.0000 0.0000 Constraint 461 496 0.8000 1.0000 2.0000 0.0000 Constraint 461 483 0.8000 1.0000 2.0000 0.0000 Constraint 461 476 0.8000 1.0000 2.0000 0.0000 Constraint 461 469 0.8000 1.0000 2.0000 0.0000 Constraint 452 529 0.8000 1.0000 2.0000 0.0000 Constraint 452 512 0.8000 1.0000 2.0000 0.0000 Constraint 452 503 0.8000 1.0000 2.0000 0.0000 Constraint 452 496 0.8000 1.0000 2.0000 0.0000 Constraint 452 483 0.8000 1.0000 2.0000 0.0000 Constraint 452 476 0.8000 1.0000 2.0000 0.0000 Constraint 452 469 0.8000 1.0000 2.0000 0.0000 Constraint 452 461 0.8000 1.0000 2.0000 0.0000 Constraint 444 537 0.8000 1.0000 2.0000 0.0000 Constraint 444 503 0.8000 1.0000 2.0000 0.0000 Constraint 444 496 0.8000 1.0000 2.0000 0.0000 Constraint 444 483 0.8000 1.0000 2.0000 0.0000 Constraint 444 476 0.8000 1.0000 2.0000 0.0000 Constraint 444 469 0.8000 1.0000 2.0000 0.0000 Constraint 444 461 0.8000 1.0000 2.0000 0.0000 Constraint 444 452 0.8000 1.0000 2.0000 0.0000 Constraint 435 496 0.8000 1.0000 2.0000 0.0000 Constraint 435 483 0.8000 1.0000 2.0000 0.0000 Constraint 435 476 0.8000 1.0000 2.0000 0.0000 Constraint 435 469 0.8000 1.0000 2.0000 0.0000 Constraint 435 461 0.8000 1.0000 2.0000 0.0000 Constraint 435 452 0.8000 1.0000 2.0000 0.0000 Constraint 435 444 0.8000 1.0000 2.0000 0.0000 Constraint 426 611 0.8000 1.0000 2.0000 0.0000 Constraint 426 483 0.8000 1.0000 2.0000 0.0000 Constraint 426 476 0.8000 1.0000 2.0000 0.0000 Constraint 426 469 0.8000 1.0000 2.0000 0.0000 Constraint 426 461 0.8000 1.0000 2.0000 0.0000 Constraint 426 452 0.8000 1.0000 2.0000 0.0000 Constraint 426 444 0.8000 1.0000 2.0000 0.0000 Constraint 426 435 0.8000 1.0000 2.0000 0.0000 Constraint 417 611 0.8000 1.0000 2.0000 0.0000 Constraint 417 483 0.8000 1.0000 2.0000 0.0000 Constraint 417 476 0.8000 1.0000 2.0000 0.0000 Constraint 417 469 0.8000 1.0000 2.0000 0.0000 Constraint 417 461 0.8000 1.0000 2.0000 0.0000 Constraint 417 452 0.8000 1.0000 2.0000 0.0000 Constraint 417 444 0.8000 1.0000 2.0000 0.0000 Constraint 417 435 0.8000 1.0000 2.0000 0.0000 Constraint 417 426 0.8000 1.0000 2.0000 0.0000 Constraint 410 476 0.8000 1.0000 2.0000 0.0000 Constraint 410 469 0.8000 1.0000 2.0000 0.0000 Constraint 410 461 0.8000 1.0000 2.0000 0.0000 Constraint 410 452 0.8000 1.0000 2.0000 0.0000 Constraint 410 444 0.8000 1.0000 2.0000 0.0000 Constraint 410 435 0.8000 1.0000 2.0000 0.0000 Constraint 410 426 0.8000 1.0000 2.0000 0.0000 Constraint 410 417 0.8000 1.0000 2.0000 0.0000 Constraint 403 469 0.8000 1.0000 2.0000 0.0000 Constraint 403 461 0.8000 1.0000 2.0000 0.0000 Constraint 403 452 0.8000 1.0000 2.0000 0.0000 Constraint 403 444 0.8000 1.0000 2.0000 0.0000 Constraint 403 435 0.8000 1.0000 2.0000 0.0000 Constraint 403 426 0.8000 1.0000 2.0000 0.0000 Constraint 403 417 0.8000 1.0000 2.0000 0.0000 Constraint 403 410 0.8000 1.0000 2.0000 0.0000 Constraint 395 461 0.8000 1.0000 2.0000 0.0000 Constraint 395 452 0.8000 1.0000 2.0000 0.0000 Constraint 395 444 0.8000 1.0000 2.0000 0.0000 Constraint 395 435 0.8000 1.0000 2.0000 0.0000 Constraint 395 426 0.8000 1.0000 2.0000 0.0000 Constraint 395 417 0.8000 1.0000 2.0000 0.0000 Constraint 395 410 0.8000 1.0000 2.0000 0.0000 Constraint 395 403 0.8000 1.0000 2.0000 0.0000 Constraint 389 452 0.8000 1.0000 2.0000 0.0000 Constraint 389 444 0.8000 1.0000 2.0000 0.0000 Constraint 389 435 0.8000 1.0000 2.0000 0.0000 Constraint 389 426 0.8000 1.0000 2.0000 0.0000 Constraint 389 417 0.8000 1.0000 2.0000 0.0000 Constraint 389 410 0.8000 1.0000 2.0000 0.0000 Constraint 389 403 0.8000 1.0000 2.0000 0.0000 Constraint 389 395 0.8000 1.0000 2.0000 0.0000 Constraint 382 444 0.8000 1.0000 2.0000 0.0000 Constraint 382 435 0.8000 1.0000 2.0000 0.0000 Constraint 382 426 0.8000 1.0000 2.0000 0.0000 Constraint 382 417 0.8000 1.0000 2.0000 0.0000 Constraint 382 410 0.8000 1.0000 2.0000 0.0000 Constraint 382 403 0.8000 1.0000 2.0000 0.0000 Constraint 382 395 0.8000 1.0000 2.0000 0.0000 Constraint 382 389 0.8000 1.0000 2.0000 0.0000 Constraint 374 435 0.8000 1.0000 2.0000 0.0000 Constraint 374 426 0.8000 1.0000 2.0000 0.0000 Constraint 374 417 0.8000 1.0000 2.0000 0.0000 Constraint 374 410 0.8000 1.0000 2.0000 0.0000 Constraint 374 403 0.8000 1.0000 2.0000 0.0000 Constraint 374 395 0.8000 1.0000 2.0000 0.0000 Constraint 374 389 0.8000 1.0000 2.0000 0.0000 Constraint 374 382 0.8000 1.0000 2.0000 0.0000 Constraint 365 426 0.8000 1.0000 2.0000 0.0000 Constraint 365 417 0.8000 1.0000 2.0000 0.0000 Constraint 365 410 0.8000 1.0000 2.0000 0.0000 Constraint 365 403 0.8000 1.0000 2.0000 0.0000 Constraint 365 395 0.8000 1.0000 2.0000 0.0000 Constraint 365 389 0.8000 1.0000 2.0000 0.0000 Constraint 365 382 0.8000 1.0000 2.0000 0.0000 Constraint 365 374 0.8000 1.0000 2.0000 0.0000 Constraint 353 417 0.8000 1.0000 2.0000 0.0000 Constraint 353 410 0.8000 1.0000 2.0000 0.0000 Constraint 353 403 0.8000 1.0000 2.0000 0.0000 Constraint 353 395 0.8000 1.0000 2.0000 0.0000 Constraint 353 389 0.8000 1.0000 2.0000 0.0000 Constraint 353 382 0.8000 1.0000 2.0000 0.0000 Constraint 353 374 0.8000 1.0000 2.0000 0.0000 Constraint 353 365 0.8000 1.0000 2.0000 0.0000 Constraint 342 452 0.8000 1.0000 2.0000 0.0000 Constraint 342 444 0.8000 1.0000 2.0000 0.0000 Constraint 342 403 0.8000 1.0000 2.0000 0.0000 Constraint 342 395 0.8000 1.0000 2.0000 0.0000 Constraint 342 389 0.8000 1.0000 2.0000 0.0000 Constraint 342 382 0.8000 1.0000 2.0000 0.0000 Constraint 342 374 0.8000 1.0000 2.0000 0.0000 Constraint 342 365 0.8000 1.0000 2.0000 0.0000 Constraint 342 353 0.8000 1.0000 2.0000 0.0000 Constraint 333 591 0.8000 1.0000 2.0000 0.0000 Constraint 333 581 0.8000 1.0000 2.0000 0.0000 Constraint 333 571 0.8000 1.0000 2.0000 0.0000 Constraint 333 520 0.8000 1.0000 2.0000 0.0000 Constraint 333 503 0.8000 1.0000 2.0000 0.0000 Constraint 333 476 0.8000 1.0000 2.0000 0.0000 Constraint 333 452 0.8000 1.0000 2.0000 0.0000 Constraint 333 435 0.8000 1.0000 2.0000 0.0000 Constraint 333 417 0.8000 1.0000 2.0000 0.0000 Constraint 333 395 0.8000 1.0000 2.0000 0.0000 Constraint 333 389 0.8000 1.0000 2.0000 0.0000 Constraint 333 382 0.8000 1.0000 2.0000 0.0000 Constraint 333 374 0.8000 1.0000 2.0000 0.0000 Constraint 333 365 0.8000 1.0000 2.0000 0.0000 Constraint 333 353 0.8000 1.0000 2.0000 0.0000 Constraint 333 342 0.8000 1.0000 2.0000 0.0000 Constraint 327 591 0.8000 1.0000 2.0000 0.0000 Constraint 327 561 0.8000 1.0000 2.0000 0.0000 Constraint 327 520 0.8000 1.0000 2.0000 0.0000 Constraint 327 469 0.8000 1.0000 2.0000 0.0000 Constraint 327 444 0.8000 1.0000 2.0000 0.0000 Constraint 327 389 0.8000 1.0000 2.0000 0.0000 Constraint 327 382 0.8000 1.0000 2.0000 0.0000 Constraint 327 374 0.8000 1.0000 2.0000 0.0000 Constraint 327 365 0.8000 1.0000 2.0000 0.0000 Constraint 327 353 0.8000 1.0000 2.0000 0.0000 Constraint 327 342 0.8000 1.0000 2.0000 0.0000 Constraint 327 333 0.8000 1.0000 2.0000 0.0000 Constraint 319 611 0.8000 1.0000 2.0000 0.0000 Constraint 319 591 0.8000 1.0000 2.0000 0.0000 Constraint 319 435 0.8000 1.0000 2.0000 0.0000 Constraint 319 426 0.8000 1.0000 2.0000 0.0000 Constraint 319 382 0.8000 1.0000 2.0000 0.0000 Constraint 319 374 0.8000 1.0000 2.0000 0.0000 Constraint 319 365 0.8000 1.0000 2.0000 0.0000 Constraint 319 353 0.8000 1.0000 2.0000 0.0000 Constraint 319 342 0.8000 1.0000 2.0000 0.0000 Constraint 319 333 0.8000 1.0000 2.0000 0.0000 Constraint 319 327 0.8000 1.0000 2.0000 0.0000 Constraint 311 611 0.8000 1.0000 2.0000 0.0000 Constraint 311 561 0.8000 1.0000 2.0000 0.0000 Constraint 311 483 0.8000 1.0000 2.0000 0.0000 Constraint 311 426 0.8000 1.0000 2.0000 0.0000 Constraint 311 374 0.8000 1.0000 2.0000 0.0000 Constraint 311 365 0.8000 1.0000 2.0000 0.0000 Constraint 311 353 0.8000 1.0000 2.0000 0.0000 Constraint 311 342 0.8000 1.0000 2.0000 0.0000 Constraint 311 333 0.8000 1.0000 2.0000 0.0000 Constraint 311 327 0.8000 1.0000 2.0000 0.0000 Constraint 311 319 0.8000 1.0000 2.0000 0.0000 Constraint 302 611 0.8000 1.0000 2.0000 0.0000 Constraint 302 601 0.8000 1.0000 2.0000 0.0000 Constraint 302 591 0.8000 1.0000 2.0000 0.0000 Constraint 302 561 0.8000 1.0000 2.0000 0.0000 Constraint 302 503 0.8000 1.0000 2.0000 0.0000 Constraint 302 435 0.8000 1.0000 2.0000 0.0000 Constraint 302 365 0.8000 1.0000 2.0000 0.0000 Constraint 302 353 0.8000 1.0000 2.0000 0.0000 Constraint 302 342 0.8000 1.0000 2.0000 0.0000 Constraint 302 333 0.8000 1.0000 2.0000 0.0000 Constraint 302 327 0.8000 1.0000 2.0000 0.0000 Constraint 302 319 0.8000 1.0000 2.0000 0.0000 Constraint 302 311 0.8000 1.0000 2.0000 0.0000 Constraint 293 601 0.8000 1.0000 2.0000 0.0000 Constraint 293 561 0.8000 1.0000 2.0000 0.0000 Constraint 293 537 0.8000 1.0000 2.0000 0.0000 Constraint 293 353 0.8000 1.0000 2.0000 0.0000 Constraint 293 342 0.8000 1.0000 2.0000 0.0000 Constraint 293 333 0.8000 1.0000 2.0000 0.0000 Constraint 293 327 0.8000 1.0000 2.0000 0.0000 Constraint 293 319 0.8000 1.0000 2.0000 0.0000 Constraint 293 311 0.8000 1.0000 2.0000 0.0000 Constraint 293 302 0.8000 1.0000 2.0000 0.0000 Constraint 282 571 0.8000 1.0000 2.0000 0.0000 Constraint 282 561 0.8000 1.0000 2.0000 0.0000 Constraint 282 552 0.8000 1.0000 2.0000 0.0000 Constraint 282 452 0.8000 1.0000 2.0000 0.0000 Constraint 282 426 0.8000 1.0000 2.0000 0.0000 Constraint 282 353 0.8000 1.0000 2.0000 0.0000 Constraint 282 342 0.8000 1.0000 2.0000 0.0000 Constraint 282 333 0.8000 1.0000 2.0000 0.0000 Constraint 282 327 0.8000 1.0000 2.0000 0.0000 Constraint 282 319 0.8000 1.0000 2.0000 0.0000 Constraint 282 311 0.8000 1.0000 2.0000 0.0000 Constraint 282 302 0.8000 1.0000 2.0000 0.0000 Constraint 282 293 0.8000 1.0000 2.0000 0.0000 Constraint 274 426 0.8000 1.0000 2.0000 0.0000 Constraint 274 382 0.8000 1.0000 2.0000 0.0000 Constraint 274 342 0.8000 1.0000 2.0000 0.0000 Constraint 274 333 0.8000 1.0000 2.0000 0.0000 Constraint 274 327 0.8000 1.0000 2.0000 0.0000 Constraint 274 319 0.8000 1.0000 2.0000 0.0000 Constraint 274 311 0.8000 1.0000 2.0000 0.0000 Constraint 274 302 0.8000 1.0000 2.0000 0.0000 Constraint 274 293 0.8000 1.0000 2.0000 0.0000 Constraint 274 282 0.8000 1.0000 2.0000 0.0000 Constraint 262 333 0.8000 1.0000 2.0000 0.0000 Constraint 262 327 0.8000 1.0000 2.0000 0.0000 Constraint 262 319 0.8000 1.0000 2.0000 0.0000 Constraint 262 311 0.8000 1.0000 2.0000 0.0000 Constraint 262 302 0.8000 1.0000 2.0000 0.0000 Constraint 262 293 0.8000 1.0000 2.0000 0.0000 Constraint 262 282 0.8000 1.0000 2.0000 0.0000 Constraint 262 274 0.8000 1.0000 2.0000 0.0000 Constraint 255 561 0.8000 1.0000 2.0000 0.0000 Constraint 255 452 0.8000 1.0000 2.0000 0.0000 Constraint 255 353 0.8000 1.0000 2.0000 0.0000 Constraint 255 327 0.8000 1.0000 2.0000 0.0000 Constraint 255 319 0.8000 1.0000 2.0000 0.0000 Constraint 255 311 0.8000 1.0000 2.0000 0.0000 Constraint 255 302 0.8000 1.0000 2.0000 0.0000 Constraint 255 293 0.8000 1.0000 2.0000 0.0000 Constraint 255 282 0.8000 1.0000 2.0000 0.0000 Constraint 255 274 0.8000 1.0000 2.0000 0.0000 Constraint 255 262 0.8000 1.0000 2.0000 0.0000 Constraint 243 561 0.8000 1.0000 2.0000 0.0000 Constraint 243 319 0.8000 1.0000 2.0000 0.0000 Constraint 243 311 0.8000 1.0000 2.0000 0.0000 Constraint 243 302 0.8000 1.0000 2.0000 0.0000 Constraint 243 293 0.8000 1.0000 2.0000 0.0000 Constraint 243 282 0.8000 1.0000 2.0000 0.0000 Constraint 243 274 0.8000 1.0000 2.0000 0.0000 Constraint 243 262 0.8000 1.0000 2.0000 0.0000 Constraint 243 255 0.8000 1.0000 2.0000 0.0000 Constraint 234 591 0.8000 1.0000 2.0000 0.0000 Constraint 234 561 0.8000 1.0000 2.0000 0.0000 Constraint 234 552 0.8000 1.0000 2.0000 0.0000 Constraint 234 537 0.8000 1.0000 2.0000 0.0000 Constraint 234 529 0.8000 1.0000 2.0000 0.0000 Constraint 234 311 0.8000 1.0000 2.0000 0.0000 Constraint 234 302 0.8000 1.0000 2.0000 0.0000 Constraint 234 293 0.8000 1.0000 2.0000 0.0000 Constraint 234 282 0.8000 1.0000 2.0000 0.0000 Constraint 234 274 0.8000 1.0000 2.0000 0.0000 Constraint 234 262 0.8000 1.0000 2.0000 0.0000 Constraint 234 255 0.8000 1.0000 2.0000 0.0000 Constraint 234 243 0.8000 1.0000 2.0000 0.0000 Constraint 229 611 0.8000 1.0000 2.0000 0.0000 Constraint 229 591 0.8000 1.0000 2.0000 0.0000 Constraint 229 561 0.8000 1.0000 2.0000 0.0000 Constraint 229 552 0.8000 1.0000 2.0000 0.0000 Constraint 229 520 0.8000 1.0000 2.0000 0.0000 Constraint 229 353 0.8000 1.0000 2.0000 0.0000 Constraint 229 302 0.8000 1.0000 2.0000 0.0000 Constraint 229 293 0.8000 1.0000 2.0000 0.0000 Constraint 229 282 0.8000 1.0000 2.0000 0.0000 Constraint 229 274 0.8000 1.0000 2.0000 0.0000 Constraint 229 262 0.8000 1.0000 2.0000 0.0000 Constraint 229 255 0.8000 1.0000 2.0000 0.0000 Constraint 229 243 0.8000 1.0000 2.0000 0.0000 Constraint 229 234 0.8000 1.0000 2.0000 0.0000 Constraint 220 591 0.8000 1.0000 2.0000 0.0000 Constraint 220 581 0.8000 1.0000 2.0000 0.0000 Constraint 220 571 0.8000 1.0000 2.0000 0.0000 Constraint 220 561 0.8000 1.0000 2.0000 0.0000 Constraint 220 552 0.8000 1.0000 2.0000 0.0000 Constraint 220 544 0.8000 1.0000 2.0000 0.0000 Constraint 220 537 0.8000 1.0000 2.0000 0.0000 Constraint 220 293 0.8000 1.0000 2.0000 0.0000 Constraint 220 282 0.8000 1.0000 2.0000 0.0000 Constraint 220 274 0.8000 1.0000 2.0000 0.0000 Constraint 220 262 0.8000 1.0000 2.0000 0.0000 Constraint 220 255 0.8000 1.0000 2.0000 0.0000 Constraint 220 243 0.8000 1.0000 2.0000 0.0000 Constraint 220 234 0.8000 1.0000 2.0000 0.0000 Constraint 220 229 0.8000 1.0000 2.0000 0.0000 Constraint 211 581 0.8000 1.0000 2.0000 0.0000 Constraint 211 571 0.8000 1.0000 2.0000 0.0000 Constraint 211 544 0.8000 1.0000 2.0000 0.0000 Constraint 211 537 0.8000 1.0000 2.0000 0.0000 Constraint 211 374 0.8000 1.0000 2.0000 0.0000 Constraint 211 282 0.8000 1.0000 2.0000 0.0000 Constraint 211 274 0.8000 1.0000 2.0000 0.0000 Constraint 211 262 0.8000 1.0000 2.0000 0.0000 Constraint 211 255 0.8000 1.0000 2.0000 0.0000 Constraint 211 243 0.8000 1.0000 2.0000 0.0000 Constraint 211 234 0.8000 1.0000 2.0000 0.0000 Constraint 211 229 0.8000 1.0000 2.0000 0.0000 Constraint 211 220 0.8000 1.0000 2.0000 0.0000 Constraint 204 611 0.8000 1.0000 2.0000 0.0000 Constraint 204 591 0.8000 1.0000 2.0000 0.0000 Constraint 204 561 0.8000 1.0000 2.0000 0.0000 Constraint 204 552 0.8000 1.0000 2.0000 0.0000 Constraint 204 529 0.8000 1.0000 2.0000 0.0000 Constraint 204 302 0.8000 1.0000 2.0000 0.0000 Constraint 204 274 0.8000 1.0000 2.0000 0.0000 Constraint 204 262 0.8000 1.0000 2.0000 0.0000 Constraint 204 255 0.8000 1.0000 2.0000 0.0000 Constraint 204 243 0.8000 1.0000 2.0000 0.0000 Constraint 204 234 0.8000 1.0000 2.0000 0.0000 Constraint 204 229 0.8000 1.0000 2.0000 0.0000 Constraint 204 220 0.8000 1.0000 2.0000 0.0000 Constraint 204 211 0.8000 1.0000 2.0000 0.0000 Constraint 195 611 0.8000 1.0000 2.0000 0.0000 Constraint 195 591 0.8000 1.0000 2.0000 0.0000 Constraint 195 571 0.8000 1.0000 2.0000 0.0000 Constraint 195 552 0.8000 1.0000 2.0000 0.0000 Constraint 195 529 0.8000 1.0000 2.0000 0.0000 Constraint 195 342 0.8000 1.0000 2.0000 0.0000 Constraint 195 262 0.8000 1.0000 2.0000 0.0000 Constraint 195 255 0.8000 1.0000 2.0000 0.0000 Constraint 195 243 0.8000 1.0000 2.0000 0.0000 Constraint 195 234 0.8000 1.0000 2.0000 0.0000 Constraint 195 229 0.8000 1.0000 2.0000 0.0000 Constraint 195 220 0.8000 1.0000 2.0000 0.0000 Constraint 195 211 0.8000 1.0000 2.0000 0.0000 Constraint 195 204 0.8000 1.0000 2.0000 0.0000 Constraint 186 611 0.8000 1.0000 2.0000 0.0000 Constraint 186 591 0.8000 1.0000 2.0000 0.0000 Constraint 186 571 0.8000 1.0000 2.0000 0.0000 Constraint 186 552 0.8000 1.0000 2.0000 0.0000 Constraint 186 544 0.8000 1.0000 2.0000 0.0000 Constraint 186 529 0.8000 1.0000 2.0000 0.0000 Constraint 186 503 0.8000 1.0000 2.0000 0.0000 Constraint 186 327 0.8000 1.0000 2.0000 0.0000 Constraint 186 255 0.8000 1.0000 2.0000 0.0000 Constraint 186 243 0.8000 1.0000 2.0000 0.0000 Constraint 186 234 0.8000 1.0000 2.0000 0.0000 Constraint 186 229 0.8000 1.0000 2.0000 0.0000 Constraint 186 220 0.8000 1.0000 2.0000 0.0000 Constraint 186 211 0.8000 1.0000 2.0000 0.0000 Constraint 186 204 0.8000 1.0000 2.0000 0.0000 Constraint 186 195 0.8000 1.0000 2.0000 0.0000 Constraint 179 611 0.8000 1.0000 2.0000 0.0000 Constraint 179 591 0.8000 1.0000 2.0000 0.0000 Constraint 179 581 0.8000 1.0000 2.0000 0.0000 Constraint 179 571 0.8000 1.0000 2.0000 0.0000 Constraint 179 552 0.8000 1.0000 2.0000 0.0000 Constraint 179 544 0.8000 1.0000 2.0000 0.0000 Constraint 179 537 0.8000 1.0000 2.0000 0.0000 Constraint 179 529 0.8000 1.0000 2.0000 0.0000 Constraint 179 503 0.8000 1.0000 2.0000 0.0000 Constraint 179 374 0.8000 1.0000 2.0000 0.0000 Constraint 179 243 0.8000 1.0000 2.0000 0.0000 Constraint 179 234 0.8000 1.0000 2.0000 0.0000 Constraint 179 229 0.8000 1.0000 2.0000 0.0000 Constraint 179 220 0.8000 1.0000 2.0000 0.0000 Constraint 179 211 0.8000 1.0000 2.0000 0.0000 Constraint 179 204 0.8000 1.0000 2.0000 0.0000 Constraint 179 195 0.8000 1.0000 2.0000 0.0000 Constraint 179 186 0.8000 1.0000 2.0000 0.0000 Constraint 172 611 0.8000 1.0000 2.0000 0.0000 Constraint 172 601 0.8000 1.0000 2.0000 0.0000 Constraint 172 591 0.8000 1.0000 2.0000 0.0000 Constraint 172 561 0.8000 1.0000 2.0000 0.0000 Constraint 172 552 0.8000 1.0000 2.0000 0.0000 Constraint 172 529 0.8000 1.0000 2.0000 0.0000 Constraint 172 234 0.8000 1.0000 2.0000 0.0000 Constraint 172 229 0.8000 1.0000 2.0000 0.0000 Constraint 172 220 0.8000 1.0000 2.0000 0.0000 Constraint 172 211 0.8000 1.0000 2.0000 0.0000 Constraint 172 204 0.8000 1.0000 2.0000 0.0000 Constraint 172 195 0.8000 1.0000 2.0000 0.0000 Constraint 172 186 0.8000 1.0000 2.0000 0.0000 Constraint 172 179 0.8000 1.0000 2.0000 0.0000 Constraint 163 611 0.8000 1.0000 2.0000 0.0000 Constraint 163 601 0.8000 1.0000 2.0000 0.0000 Constraint 163 591 0.8000 1.0000 2.0000 0.0000 Constraint 163 571 0.8000 1.0000 2.0000 0.0000 Constraint 163 561 0.8000 1.0000 2.0000 0.0000 Constraint 163 544 0.8000 1.0000 2.0000 0.0000 Constraint 163 529 0.8000 1.0000 2.0000 0.0000 Constraint 163 229 0.8000 1.0000 2.0000 0.0000 Constraint 163 220 0.8000 1.0000 2.0000 0.0000 Constraint 163 211 0.8000 1.0000 2.0000 0.0000 Constraint 163 204 0.8000 1.0000 2.0000 0.0000 Constraint 163 195 0.8000 1.0000 2.0000 0.0000 Constraint 163 186 0.8000 1.0000 2.0000 0.0000 Constraint 163 179 0.8000 1.0000 2.0000 0.0000 Constraint 163 172 0.8000 1.0000 2.0000 0.0000 Constraint 155 611 0.8000 1.0000 2.0000 0.0000 Constraint 155 601 0.8000 1.0000 2.0000 0.0000 Constraint 155 591 0.8000 1.0000 2.0000 0.0000 Constraint 155 581 0.8000 1.0000 2.0000 0.0000 Constraint 155 561 0.8000 1.0000 2.0000 0.0000 Constraint 155 552 0.8000 1.0000 2.0000 0.0000 Constraint 155 220 0.8000 1.0000 2.0000 0.0000 Constraint 155 211 0.8000 1.0000 2.0000 0.0000 Constraint 155 204 0.8000 1.0000 2.0000 0.0000 Constraint 155 195 0.8000 1.0000 2.0000 0.0000 Constraint 155 186 0.8000 1.0000 2.0000 0.0000 Constraint 155 179 0.8000 1.0000 2.0000 0.0000 Constraint 155 172 0.8000 1.0000 2.0000 0.0000 Constraint 155 163 0.8000 1.0000 2.0000 0.0000 Constraint 148 611 0.8000 1.0000 2.0000 0.0000 Constraint 148 601 0.8000 1.0000 2.0000 0.0000 Constraint 148 591 0.8000 1.0000 2.0000 0.0000 Constraint 148 581 0.8000 1.0000 2.0000 0.0000 Constraint 148 571 0.8000 1.0000 2.0000 0.0000 Constraint 148 561 0.8000 1.0000 2.0000 0.0000 Constraint 148 552 0.8000 1.0000 2.0000 0.0000 Constraint 148 435 0.8000 1.0000 2.0000 0.0000 Constraint 148 353 0.8000 1.0000 2.0000 0.0000 Constraint 148 327 0.8000 1.0000 2.0000 0.0000 Constraint 148 211 0.8000 1.0000 2.0000 0.0000 Constraint 148 204 0.8000 1.0000 2.0000 0.0000 Constraint 148 195 0.8000 1.0000 2.0000 0.0000 Constraint 148 186 0.8000 1.0000 2.0000 0.0000 Constraint 148 179 0.8000 1.0000 2.0000 0.0000 Constraint 148 172 0.8000 1.0000 2.0000 0.0000 Constraint 148 163 0.8000 1.0000 2.0000 0.0000 Constraint 148 155 0.8000 1.0000 2.0000 0.0000 Constraint 140 611 0.8000 1.0000 2.0000 0.0000 Constraint 140 601 0.8000 1.0000 2.0000 0.0000 Constraint 140 591 0.8000 1.0000 2.0000 0.0000 Constraint 140 581 0.8000 1.0000 2.0000 0.0000 Constraint 140 571 0.8000 1.0000 2.0000 0.0000 Constraint 140 327 0.8000 1.0000 2.0000 0.0000 Constraint 140 204 0.8000 1.0000 2.0000 0.0000 Constraint 140 195 0.8000 1.0000 2.0000 0.0000 Constraint 140 186 0.8000 1.0000 2.0000 0.0000 Constraint 140 179 0.8000 1.0000 2.0000 0.0000 Constraint 140 172 0.8000 1.0000 2.0000 0.0000 Constraint 140 163 0.8000 1.0000 2.0000 0.0000 Constraint 140 155 0.8000 1.0000 2.0000 0.0000 Constraint 140 148 0.8000 1.0000 2.0000 0.0000 Constraint 132 611 0.8000 1.0000 2.0000 0.0000 Constraint 132 601 0.8000 1.0000 2.0000 0.0000 Constraint 132 591 0.8000 1.0000 2.0000 0.0000 Constraint 132 571 0.8000 1.0000 2.0000 0.0000 Constraint 132 461 0.8000 1.0000 2.0000 0.0000 Constraint 132 452 0.8000 1.0000 2.0000 0.0000 Constraint 132 435 0.8000 1.0000 2.0000 0.0000 Constraint 132 426 0.8000 1.0000 2.0000 0.0000 Constraint 132 327 0.8000 1.0000 2.0000 0.0000 Constraint 132 293 0.8000 1.0000 2.0000 0.0000 Constraint 132 195 0.8000 1.0000 2.0000 0.0000 Constraint 132 186 0.8000 1.0000 2.0000 0.0000 Constraint 132 179 0.8000 1.0000 2.0000 0.0000 Constraint 132 172 0.8000 1.0000 2.0000 0.0000 Constraint 132 163 0.8000 1.0000 2.0000 0.0000 Constraint 132 155 0.8000 1.0000 2.0000 0.0000 Constraint 132 148 0.8000 1.0000 2.0000 0.0000 Constraint 132 140 0.8000 1.0000 2.0000 0.0000 Constraint 124 611 0.8000 1.0000 2.0000 0.0000 Constraint 124 571 0.8000 1.0000 2.0000 0.0000 Constraint 124 561 0.8000 1.0000 2.0000 0.0000 Constraint 124 461 0.8000 1.0000 2.0000 0.0000 Constraint 124 452 0.8000 1.0000 2.0000 0.0000 Constraint 124 435 0.8000 1.0000 2.0000 0.0000 Constraint 124 426 0.8000 1.0000 2.0000 0.0000 Constraint 124 410 0.8000 1.0000 2.0000 0.0000 Constraint 124 327 0.8000 1.0000 2.0000 0.0000 Constraint 124 311 0.8000 1.0000 2.0000 0.0000 Constraint 124 302 0.8000 1.0000 2.0000 0.0000 Constraint 124 186 0.8000 1.0000 2.0000 0.0000 Constraint 124 179 0.8000 1.0000 2.0000 0.0000 Constraint 124 172 0.8000 1.0000 2.0000 0.0000 Constraint 124 163 0.8000 1.0000 2.0000 0.0000 Constraint 124 155 0.8000 1.0000 2.0000 0.0000 Constraint 124 148 0.8000 1.0000 2.0000 0.0000 Constraint 124 140 0.8000 1.0000 2.0000 0.0000 Constraint 124 132 0.8000 1.0000 2.0000 0.0000 Constraint 113 611 0.8000 1.0000 2.0000 0.0000 Constraint 113 452 0.8000 1.0000 2.0000 0.0000 Constraint 113 302 0.8000 1.0000 2.0000 0.0000 Constraint 113 179 0.8000 1.0000 2.0000 0.0000 Constraint 113 172 0.8000 1.0000 2.0000 0.0000 Constraint 113 163 0.8000 1.0000 2.0000 0.0000 Constraint 113 155 0.8000 1.0000 2.0000 0.0000 Constraint 113 148 0.8000 1.0000 2.0000 0.0000 Constraint 113 140 0.8000 1.0000 2.0000 0.0000 Constraint 113 132 0.8000 1.0000 2.0000 0.0000 Constraint 113 124 0.8000 1.0000 2.0000 0.0000 Constraint 102 611 0.8000 1.0000 2.0000 0.0000 Constraint 102 601 0.8000 1.0000 2.0000 0.0000 Constraint 102 172 0.8000 1.0000 2.0000 0.0000 Constraint 102 163 0.8000 1.0000 2.0000 0.0000 Constraint 102 155 0.8000 1.0000 2.0000 0.0000 Constraint 102 148 0.8000 1.0000 2.0000 0.0000 Constraint 102 140 0.8000 1.0000 2.0000 0.0000 Constraint 102 132 0.8000 1.0000 2.0000 0.0000 Constraint 102 124 0.8000 1.0000 2.0000 0.0000 Constraint 102 113 0.8000 1.0000 2.0000 0.0000 Constraint 89 601 0.8000 1.0000 2.0000 0.0000 Constraint 89 591 0.8000 1.0000 2.0000 0.0000 Constraint 89 571 0.8000 1.0000 2.0000 0.0000 Constraint 89 403 0.8000 1.0000 2.0000 0.0000 Constraint 89 155 0.8000 1.0000 2.0000 0.0000 Constraint 89 148 0.8000 1.0000 2.0000 0.0000 Constraint 89 140 0.8000 1.0000 2.0000 0.0000 Constraint 89 132 0.8000 1.0000 2.0000 0.0000 Constraint 89 124 0.8000 1.0000 2.0000 0.0000 Constraint 89 113 0.8000 1.0000 2.0000 0.0000 Constraint 89 102 0.8000 1.0000 2.0000 0.0000 Constraint 82 601 0.8000 1.0000 2.0000 0.0000 Constraint 82 591 0.8000 1.0000 2.0000 0.0000 Constraint 82 571 0.8000 1.0000 2.0000 0.0000 Constraint 82 469 0.8000 1.0000 2.0000 0.0000 Constraint 82 148 0.8000 1.0000 2.0000 0.0000 Constraint 82 140 0.8000 1.0000 2.0000 0.0000 Constraint 82 132 0.8000 1.0000 2.0000 0.0000 Constraint 82 124 0.8000 1.0000 2.0000 0.0000 Constraint 82 113 0.8000 1.0000 2.0000 0.0000 Constraint 82 102 0.8000 1.0000 2.0000 0.0000 Constraint 82 89 0.8000 1.0000 2.0000 0.0000 Constraint 74 611 0.8000 1.0000 2.0000 0.0000 Constraint 74 571 0.8000 1.0000 2.0000 0.0000 Constraint 74 561 0.8000 1.0000 2.0000 0.0000 Constraint 74 140 0.8000 1.0000 2.0000 0.0000 Constraint 74 132 0.8000 1.0000 2.0000 0.0000 Constraint 74 124 0.8000 1.0000 2.0000 0.0000 Constraint 74 113 0.8000 1.0000 2.0000 0.0000 Constraint 74 102 0.8000 1.0000 2.0000 0.0000 Constraint 74 89 0.8000 1.0000 2.0000 0.0000 Constraint 74 82 0.8000 1.0000 2.0000 0.0000 Constraint 66 591 0.8000 1.0000 2.0000 0.0000 Constraint 66 571 0.8000 1.0000 2.0000 0.0000 Constraint 66 382 0.8000 1.0000 2.0000 0.0000 Constraint 66 333 0.8000 1.0000 2.0000 0.0000 Constraint 66 132 0.8000 1.0000 2.0000 0.0000 Constraint 66 124 0.8000 1.0000 2.0000 0.0000 Constraint 66 113 0.8000 1.0000 2.0000 0.0000 Constraint 66 102 0.8000 1.0000 2.0000 0.0000 Constraint 66 89 0.8000 1.0000 2.0000 0.0000 Constraint 66 82 0.8000 1.0000 2.0000 0.0000 Constraint 66 74 0.8000 1.0000 2.0000 0.0000 Constraint 57 601 0.8000 1.0000 2.0000 0.0000 Constraint 57 581 0.8000 1.0000 2.0000 0.0000 Constraint 57 552 0.8000 1.0000 2.0000 0.0000 Constraint 57 452 0.8000 1.0000 2.0000 0.0000 Constraint 57 435 0.8000 1.0000 2.0000 0.0000 Constraint 57 124 0.8000 1.0000 2.0000 0.0000 Constraint 57 113 0.8000 1.0000 2.0000 0.0000 Constraint 57 102 0.8000 1.0000 2.0000 0.0000 Constraint 57 89 0.8000 1.0000 2.0000 0.0000 Constraint 57 82 0.8000 1.0000 2.0000 0.0000 Constraint 57 74 0.8000 1.0000 2.0000 0.0000 Constraint 57 66 0.8000 1.0000 2.0000 0.0000 Constraint 47 469 0.8000 1.0000 2.0000 0.0000 Constraint 47 426 0.8000 1.0000 2.0000 0.0000 Constraint 47 113 0.8000 1.0000 2.0000 0.0000 Constraint 47 102 0.8000 1.0000 2.0000 0.0000 Constraint 47 89 0.8000 1.0000 2.0000 0.0000 Constraint 47 82 0.8000 1.0000 2.0000 0.0000 Constraint 47 74 0.8000 1.0000 2.0000 0.0000 Constraint 47 66 0.8000 1.0000 2.0000 0.0000 Constraint 47 57 0.8000 1.0000 2.0000 0.0000 Constraint 40 601 0.8000 1.0000 2.0000 0.0000 Constraint 40 591 0.8000 1.0000 2.0000 0.0000 Constraint 40 561 0.8000 1.0000 2.0000 0.0000 Constraint 40 302 0.8000 1.0000 2.0000 0.0000 Constraint 40 102 0.8000 1.0000 2.0000 0.0000 Constraint 40 89 0.8000 1.0000 2.0000 0.0000 Constraint 40 82 0.8000 1.0000 2.0000 0.0000 Constraint 40 74 0.8000 1.0000 2.0000 0.0000 Constraint 40 66 0.8000 1.0000 2.0000 0.0000 Constraint 40 57 0.8000 1.0000 2.0000 0.0000 Constraint 40 47 0.8000 1.0000 2.0000 0.0000 Constraint 31 561 0.8000 1.0000 2.0000 0.0000 Constraint 31 503 0.8000 1.0000 2.0000 0.0000 Constraint 31 496 0.8000 1.0000 2.0000 0.0000 Constraint 31 353 0.8000 1.0000 2.0000 0.0000 Constraint 31 163 0.8000 1.0000 2.0000 0.0000 Constraint 31 89 0.8000 1.0000 2.0000 0.0000 Constraint 31 82 0.8000 1.0000 2.0000 0.0000 Constraint 31 74 0.8000 1.0000 2.0000 0.0000 Constraint 31 66 0.8000 1.0000 2.0000 0.0000 Constraint 31 57 0.8000 1.0000 2.0000 0.0000 Constraint 31 47 0.8000 1.0000 2.0000 0.0000 Constraint 31 40 0.8000 1.0000 2.0000 0.0000 Constraint 22 611 0.8000 1.0000 2.0000 0.0000 Constraint 22 591 0.8000 1.0000 2.0000 0.0000 Constraint 22 561 0.8000 1.0000 2.0000 0.0000 Constraint 22 552 0.8000 1.0000 2.0000 0.0000 Constraint 22 544 0.8000 1.0000 2.0000 0.0000 Constraint 22 503 0.8000 1.0000 2.0000 0.0000 Constraint 22 496 0.8000 1.0000 2.0000 0.0000 Constraint 22 333 0.8000 1.0000 2.0000 0.0000 Constraint 22 148 0.8000 1.0000 2.0000 0.0000 Constraint 22 89 0.8000 1.0000 2.0000 0.0000 Constraint 22 82 0.8000 1.0000 2.0000 0.0000 Constraint 22 74 0.8000 1.0000 2.0000 0.0000 Constraint 22 66 0.8000 1.0000 2.0000 0.0000 Constraint 22 57 0.8000 1.0000 2.0000 0.0000 Constraint 22 47 0.8000 1.0000 2.0000 0.0000 Constraint 22 40 0.8000 1.0000 2.0000 0.0000 Constraint 22 31 0.8000 1.0000 2.0000 0.0000 Constraint 16 601 0.8000 1.0000 2.0000 0.0000 Constraint 16 581 0.8000 1.0000 2.0000 0.0000 Constraint 16 571 0.8000 1.0000 2.0000 0.0000 Constraint 16 561 0.8000 1.0000 2.0000 0.0000 Constraint 16 544 0.8000 1.0000 2.0000 0.0000 Constraint 16 512 0.8000 1.0000 2.0000 0.0000 Constraint 16 476 0.8000 1.0000 2.0000 0.0000 Constraint 16 82 0.8000 1.0000 2.0000 0.0000 Constraint 16 74 0.8000 1.0000 2.0000 0.0000 Constraint 16 66 0.8000 1.0000 2.0000 0.0000 Constraint 16 57 0.8000 1.0000 2.0000 0.0000 Constraint 16 47 0.8000 1.0000 2.0000 0.0000 Constraint 16 40 0.8000 1.0000 2.0000 0.0000 Constraint 16 31 0.8000 1.0000 2.0000 0.0000 Constraint 16 22 0.8000 1.0000 2.0000 0.0000 Constraint 11 581 0.8000 1.0000 2.0000 0.0000 Constraint 11 571 0.8000 1.0000 2.0000 0.0000 Constraint 11 561 0.8000 1.0000 2.0000 0.0000 Constraint 11 552 0.8000 1.0000 2.0000 0.0000 Constraint 11 512 0.8000 1.0000 2.0000 0.0000 Constraint 11 503 0.8000 1.0000 2.0000 0.0000 Constraint 11 496 0.8000 1.0000 2.0000 0.0000 Constraint 11 483 0.8000 1.0000 2.0000 0.0000 Constraint 11 476 0.8000 1.0000 2.0000 0.0000 Constraint 11 469 0.8000 1.0000 2.0000 0.0000 Constraint 11 365 0.8000 1.0000 2.0000 0.0000 Constraint 11 234 0.8000 1.0000 2.0000 0.0000 Constraint 11 211 0.8000 1.0000 2.0000 0.0000 Constraint 11 74 0.8000 1.0000 2.0000 0.0000 Constraint 11 66 0.8000 1.0000 2.0000 0.0000 Constraint 11 57 0.8000 1.0000 2.0000 0.0000 Constraint 11 47 0.8000 1.0000 2.0000 0.0000 Constraint 11 40 0.8000 1.0000 2.0000 0.0000 Constraint 11 31 0.8000 1.0000 2.0000 0.0000 Constraint 11 22 0.8000 1.0000 2.0000 0.0000 Constraint 11 16 0.8000 1.0000 2.0000 0.0000 Constraint 3 611 0.8000 1.0000 2.0000 0.0000 Constraint 3 581 0.8000 1.0000 2.0000 0.0000 Constraint 3 561 0.8000 1.0000 2.0000 0.0000 Constraint 3 512 0.8000 1.0000 2.0000 0.0000 Constraint 3 503 0.8000 1.0000 2.0000 0.0000 Constraint 3 496 0.8000 1.0000 2.0000 0.0000 Constraint 3 476 0.8000 1.0000 2.0000 0.0000 Constraint 3 469 0.8000 1.0000 2.0000 0.0000 Constraint 3 461 0.8000 1.0000 2.0000 0.0000 Constraint 3 417 0.8000 1.0000 2.0000 0.0000 Constraint 3 66 0.8000 1.0000 2.0000 0.0000 Constraint 3 57 0.8000 1.0000 2.0000 0.0000 Constraint 3 47 0.8000 1.0000 2.0000 0.0000 Constraint 3 40 0.8000 1.0000 2.0000 0.0000 Constraint 3 31 0.8000 1.0000 2.0000 0.0000 Constraint 3 22 0.8000 1.0000 2.0000 0.0000 Constraint 3 16 0.8000 1.0000 2.0000 0.0000 Constraint 3 11 0.8000 1.0000 2.0000 0.0000 Done printing distance constraints # command: