# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0305/ # command:# Making conformation for sequence T0305 numbered 1 through 297 Created new target T0305 from T0305.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0305/ # command:# reading script from file T0305.t04.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yfoA/T0305-1yfoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1yfoA expands to /projects/compbio/data/pdb/1yfo.pdb.gz 1yfoA:# T0305 read from 1yfoA/T0305-1yfoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1yfoA read from 1yfoA/T0305-1yfoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1yfoA to template set # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 3 :Q 1yfoA 210 :P # choosing archetypes in rotamer library T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADM 1yfoA 213 :PVDKLEEEINRRMADDNKLFREEFNALPACPIQA T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 247 :TCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 5 number of extra gaps= 0 total=5 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_212295100.pdb -s /var/tmp/to_scwrl_212295100.seq -o /var/tmp/from_scwrl_212295100.pdb > /var/tmp/scwrl_212295100.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_212295100.pdb Number of alignments=1 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fh7A/T0305-2fh7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2fh7A expands to /projects/compbio/data/pdb/2fh7.pdb.gz 2fh7A:Skipped atom 129, because occupancy 0.5 <= existing 0.500 in 2fh7A Skipped atom 131, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 133, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 135, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 137, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 139, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 141, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 143, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 145, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 147, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 149, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 413, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 415, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 417, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 419, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 421, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 423, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 425, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 427, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 429, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 747, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 749, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 751, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 753, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 755, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 757, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 759, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 761, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 765, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 767, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 1366, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 1368, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 1370, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 1372, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 1374, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 1376, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 1794, because occupancy 0.300 <= existing 0.700 in 2fh7A Skipped atom 1796, because occupancy 0.300 <= existing 0.700 in 2fh7A Skipped atom 1798, because occupancy 0.300 <= existing 0.700 in 2fh7A Skipped atom 1800, because occupancy 0.300 <= existing 0.700 in 2fh7A Skipped atom 1802, because occupancy 0.300 <= existing 0.700 in 2fh7A Skipped atom 1804, because occupancy 0.300 <= existing 0.700 in 2fh7A Skipped atom 1806, because occupancy 0.300 <= existing 0.700 in 2fh7A Skipped atom 1808, because occupancy 0.300 <= existing 0.700 in 2fh7A Skipped atom 1937, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 1939, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 1941, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 1943, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 1945, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 1947, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 1949, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 2385, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 2387, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 2389, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 2391, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 2393, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 2395, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 2397, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 3718, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 3720, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 3722, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 3724, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 3726, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 3728, because occupancy 0.500 <= existing 0.500 in 2fh7A Skipped atom 3730, because occupancy 0.500 <= existing 0.500 in 2fh7A # T0305 read from 2fh7A/T0305-2fh7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fh7A read from 2fh7A/T0305-2fh7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2fh7A to template set # found chain 2fh7A in template set Warning: unaligning (T0305)M225 because of BadResidue code BAD_PEPTIDE in next template residue (2fh7A)P1580 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE at template residue (2fh7A)P1580 T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQ 2fh7A 1374 :PIADMAEHTERLKANDSLKLSQEYESID T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2fh7A 1402 :PGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVILQPIEGIMG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2fh7A 1444 :SDYINANYVDGYRRQNAYIATQGPLPETFGDFWRMVWEQRSATIVMMTRLEEKSRIKCDQYWPNRGTETYGFIQVTLLDTIELATFCVRTFSLHK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 2fh7A 1539 :NGSSEKREVRQFQFTAWPDHGVPEYPTPFLAFLRRVKTCN T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2fh7A 1581 :DAGPIVVHCSAGVGRTGCFIVIDAMLERIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYSFIHEALLEAVG Number of specific fragments extracted= 5 number of extra gaps= 1 total=10 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1793256507.pdb -s /var/tmp/to_scwrl_1793256507.seq -o /var/tmp/from_scwrl_1793256507.pdb > /var/tmp/scwrl_1793256507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1793256507.pdb Number of alignments=2 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1larA/T0305-1larA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1larA expands to /projects/compbio/data/pdb/1lar.pdb.gz 1larA:# T0305 read from 1larA/T0305-1larA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1larA read from 1larA/T0305-1larA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1larA to template set # found chain 1larA in template set T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQ 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESID T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1335 :PGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1larA 1472 :SGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAAT Number of specific fragments extracted= 4 number of extra gaps= 0 total=14 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_993683397.pdb -s /var/tmp/to_scwrl_993683397.seq -o /var/tmp/from_scwrl_993683397.pdb > /var/tmp/scwrl_993683397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_993683397.pdb Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b3oA/T0305-2b3oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2b3oA expands to /projects/compbio/data/pdb/2b3o.pdb.gz 2b3oA:# T0305 read from 2b3oA/T0305-2b3oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b3oA read from 2b3oA/T0305-2b3oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2b3oA to template set # found chain 2b3oA in template set Warning: unaligning (T0305)F23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2b3oA)F244 T0305 24 :SEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 2b3oA 245 :WEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRD T0305 73 :GKDS 2b3oA 295 :NIPG T0305 79 :SDYINANYV 2b3oA 299 :SDYINANYI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEE 2b3oA 313 :GPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQR T0305 148 :YGNIIVTLKSTKIHACYTVRRFSIRN 2b3oA 374 :YGPYSVTNCGEHDTTEYKLRTLQVSP T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2b3oA 400 :LDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIK 2b3oA 444 :PHAGPIIVHCSAGIGRTGTIIVIDMLMENIS T0305 257 :DKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2b3oA 478 :LDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET Number of specific fragments extracted= 8 number of extra gaps= 0 total=22 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_2026929415.pdb -s /var/tmp/to_scwrl_2026929415.seq -o /var/tmp/from_scwrl_2026929415.pdb > /var/tmp/scwrl_2026929415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2026929415.pdb Number of alignments=4 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a5y/T0305-1a5y-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1a5y expands to /projects/compbio/data/pdb/1a5y.pdb.gz 1a5y:Bad short name: P for alphabet: pdb_atoms Bad short name: O1P for alphabet: pdb_atoms Bad short name: O2P for alphabet: pdb_atoms Bad short name: O3P for alphabet: pdb_atoms # T0305 read from 1a5y/T0305-1a5y-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1a5y read from 1a5y/T0305-1a5y-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1a5y to template set # found chain 1a5y in template set Warning: unaligning (T0305)H234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a5y)S216 Warning: unaligning (T0305)S236 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a5y)S216 T0305 9 :VKHIGELYSNN 1a5y 4 :EKEFEQIDKSG T0305 22 :GFSEDFEEVQRCTADM 1a5y 15 :SWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1a5y 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1a5y 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1a5y 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRN 1a5y 140 :LKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1a5y 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLV 1a5y 204 :LSPEHGPVVV T0305 237 :AGVGRTGTYIVIDSMLQQIKDKST 1a5y 217 :AGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1a5y 244 :VDIKKVLLDMRKFRMGLIATAEQLRFSYLAVIEGAK Number of specific fragments extracted= 10 number of extra gaps= 0 total=32 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_989230775.pdb -s /var/tmp/to_scwrl_989230775.seq -o /var/tmp/from_scwrl_989230775.pdb > /var/tmp/scwrl_989230775.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_989230775.pdb Number of alignments=5 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f71A/T0305-2f71A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2f71A expands to /projects/compbio/data/pdb/2f71.pdb.gz 2f71A:Skipped atom 12, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 16, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 18, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 20, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 22, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 166, because occupancy 0.450 <= existing 0.450 in 2f71A Skipped atom 170, because occupancy 0.450 <= existing 0.450 in 2f71A Skipped atom 172, because occupancy 0.450 <= existing 0.450 in 2f71A Skipped atom 174, because occupancy 0.450 <= existing 0.450 in 2f71A Skipped atom 176, because occupancy 0.450 <= existing 0.450 in 2f71A Skipped atom 178, because occupancy 0.450 <= existing 0.450 in 2f71A Skipped atom 181, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 185, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 187, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 189, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 223, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 227, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 229, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 231, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 233, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 235, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 281, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 285, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 287, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 289, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 291, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 293, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 295, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 297, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 531, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 533, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 535, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 537, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 539, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 541, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 543, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 545, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 547, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 549, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 551, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 553, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 555, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 557, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 561, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 563, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 565, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 567, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 569, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 577, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 581, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 647, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 651, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 653, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 655, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 657, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 700, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 704, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 706, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 708, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 710, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 712, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 997, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1001, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1003, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1005, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1038, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1042, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1044, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1055, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1059, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1061, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1063, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1065, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1067, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1379, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1383, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1385, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1387, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1389, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1391, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1467, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1471, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1473, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1475, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1477, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1479, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1517, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1521, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1523, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1525, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1527, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1645, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1649, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1651, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1653, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1655, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1657, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1678, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1682, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1684, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1744, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1748, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1750, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1752, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1754, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1756, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1766, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1770, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1772, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1774, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1776, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1778, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1780, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1782, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1831, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1835, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1837, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1839, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1841, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1843, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1867, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1871, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1873, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1875, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1908, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1912, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1914, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 1977, because occupancy 0.200 <= existing 0.800 in 2f71A Skipped atom 1981, because occupancy 0.200 <= existing 0.800 in 2f71A Skipped atom 1983, because occupancy 0.200 <= existing 0.800 in 2f71A Skipped atom 2060, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2064, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2066, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2068, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2070, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2072, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2195, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2199, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2201, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2203, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2205, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2346, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2350, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2352, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2473, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2477, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2479, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2481, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2493, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2497, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2499, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2501, because occupancy 0.500 <= existing 0.500 in 2f71A Skipped atom 2503, because occupancy 0.500 <= existing 0.500 in 2f71A # T0305 read from 2f71A/T0305-2f71A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f71A read from 2f71A/T0305-2f71A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2f71A to template set # found chain 2f71A in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (2f71A)E2 Warning: unaligning (T0305)R69 because of BadResidue code BAD_PEPTIDE in next template residue (2f71A)Q61 Warning: unaligning (T0305)S76 because of BadResidue code BAD_PEPTIDE at template residue (2f71A)Q61 Warning: unaligning (T0305)K77 because of BadResidue code BAD_PEPTIDE at template residue (2f71A)E62 Warning: unaligning (T0305)H78 because of BadResidue code BAD_PEPTIDE at template residue (2f71A)D63 T0305 8 :FVKHIGELYSNN 2f71A 3 :MEKEFEQIDKSG T0305 22 :GFSEDFEEVQRCTADM 2f71A 15 :SWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 2f71A 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKL T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2f71A 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYG 2f71A 129 :EEKEMIFE T0305 150 :NIIVTLKSTKIHACYTVRRFSIRN 2f71A 139 :NLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 2f71A 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 2f71A 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2f71A 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 9 number of extra gaps= 1 total=41 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1802491981.pdb -s /var/tmp/to_scwrl_1802491981.seq -o /var/tmp/from_scwrl_1802491981.pdb > /var/tmp/scwrl_1802491981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1802491981.pdb Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2shpA/T0305-2shpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2shpA expands to /projects/compbio/data/pdb/2shp.pdb.gz 2shpA:# T0305 read from 2shpA/T0305-2shpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2shpA read from 2shpA/T0305-2shpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2shpA to template set # found chain 2shpA in template set Warning: unaligning (T0305)E14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2shpA)G246 Warning: unaligning (T0305)G22 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2shpA)G246 Warning: unaligning (T0305)L71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2shpA)S302 Warning: unaligning (T0305)S79 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2shpA)S302 Warning: unaligning (T0305)D80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2shpA)D303 Warning: unaligning (T0305)A93 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2shpA)K324 Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2shpA)I328 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2shpA)I328 Warning: unaligning (T0305)P102 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2shpA)L334 Warning: unaligning (T0305)L103 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2shpA)L334 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2shpA)T411 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2shpA)T411 T0305 3 :QSMKQFVKHIG 2shpA 224 :AEIESRVRELS T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2shpA 247 :FWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLH T0305 81 :YINANYV 2shpA 304 :YINANII T0305 94 :KA 2shpA 325 :KS T0305 98 :ATQG 2shpA 329 :ATQG T0305 104 :KSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 2shpA 335 :QNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDE T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRNT 2shpA 376 :ALKEYGVMRVRNVKESAAHDYTLRELKLSKV T0305 185 :KGR 2shpA 407 :GQG T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2shpA 412 :ERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 2shpA 450 :MDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGV T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2shpA 488 :IDVPKTIQMVRSQRSGMVQTEAQYRSIYMAVQHYIET Number of specific fragments extracted= 11 number of extra gaps= 3 total=52 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1233114543.pdb -s /var/tmp/to_scwrl_1233114543.seq -o /var/tmp/from_scwrl_1233114543.pdb > /var/tmp/scwrl_1233114543.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1233114543.pdb Number of alignments=7 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b49A/T0305-2b49A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2b49A expands to /projects/compbio/data/pdb/2b49.pdb.gz 2b49A:Skipped atom 672, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 676, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 678, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 680, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 682, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 684, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 749, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 753, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 755, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1027, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1031, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1033, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1035, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1037, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1158, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1162, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1164, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1166, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1168, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1171, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1175, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1177, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1179, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1181, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1213, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1217, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1219, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1221, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1223, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1225, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1267, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1271, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1273, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1275, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1416, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1420, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1422, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1425, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1429, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1431, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1488, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1492, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1494, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1496, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1498, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1562, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1564, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1566, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1568, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1570, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1572, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1574, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1576, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1578, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1580, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1582, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1584, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1586, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1588, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1614, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1618, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1620, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1622, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1624, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1731, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1735, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1737, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1739, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1741, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1975, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1979, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1981, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1983, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1985, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 2011, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 2015, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 2017, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 2020, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 2024, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 2026, because occupancy 0.500 <= existing 0.500 in 2b49A # T0305 read from 2b49A/T0305-2b49A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b49A read from 2b49A/T0305-2b49A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2b49A to template set # found chain 2b49A in template set Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2b49A)I715 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2b49A)I715 T0305 26 :DFEEVQRCTADM 2b49A 649 :QFEQLYRKKPGL T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 2b49A 661 :AITFAKLPQNLDKNRYKDVLPYDTTRVLLQ T0305 75 :DS 2b49A 691 :GN T0305 79 :SDYINANYVDG 2b49A 693 :EDYINASYVNM T0305 90 :YNKAKA 2b49A 708 :ANLVNK T0305 98 :ATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2b49A 716 :ATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2b49A 761 :PPDVMNHGGFHIQCQSEDCTIAYVSREMLVTN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2b49A 793 :TQTGEEHTVTHLQYVAWPDHGVPDDSSDFLEFVNYVRSLRV T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2b49A 834 :DSEPVLVHCSAGIGRTGVLVTMETAMCLTERNLPIYPLDIVRKMRDQRAMMVQTSSQYKFVCEAILRVYEE Number of specific fragments extracted= 9 number of extra gaps= 1 total=61 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1638253539.pdb -s /var/tmp/to_scwrl_1638253539.seq -o /var/tmp/from_scwrl_1638253539.pdb > /var/tmp/scwrl_1638253539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1638253539.pdb Number of alignments=8 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bzlA/T0305-2bzlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bzlA expands to /projects/compbio/data/pdb/2bzl.pdb.gz 2bzlA:Skipped atom 1123, because occupancy 0.300 <= existing 0.700 in 2bzlA Skipped atom 1127, because occupancy 0.300 <= existing 0.700 in 2bzlA Skipped atom 1129, because occupancy 0.300 <= existing 0.700 in 2bzlA Skipped atom 1131, because occupancy 0.300 <= existing 0.700 in 2bzlA Skipped atom 1133, because occupancy 0.300 <= existing 0.700 in 2bzlA Skipped atom 1135, because occupancy 0.300 <= existing 0.700 in 2bzlA Skipped atom 1137, because occupancy 0.300 <= existing 0.700 in 2bzlA Skipped atom 1139, because occupancy 0.300 <= existing 0.700 in 2bzlA Skipped atom 1170, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1174, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1176, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1434, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1438, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1440, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1471, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1475, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1477, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1479, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1481, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1483, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1750, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1754, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1756, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1808, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1812, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1814, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1816, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 1818, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 2115, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 2119, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 2121, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 2123, because occupancy 0.500 <= existing 0.500 in 2bzlA Skipped atom 2125, because occupancy 0.500 <= existing 0.500 in 2bzlA # T0305 read from 2bzlA/T0305-2bzlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2bzlA read from 2bzlA/T0305-2bzlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2bzlA to template set # found chain 2bzlA in template set Warning: unaligning (T0305)Y16 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)E143 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)K1029 T0305 8 :FVKHIGEL 2bzlA 896 :RFRTLKKK T0305 23 :FSEDFEEVQRCTADM 2bzlA 909 :VFTEYEQIPKKKANG T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 924 :IFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDG 2bzlA 960 :TGYINASHIKV T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 973 :GGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1031 :SSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=69 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_263043320.pdb -s /var/tmp/to_scwrl_263043320.seq -o /var/tmp/from_scwrl_263043320.pdb > /var/tmp/scwrl_263043320.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_263043320.pdb Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bv5A/T0305-2bv5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bv5A expands to /projects/compbio/data/pdb/2bv5.pdb.gz 2bv5A:Skipped atom 31, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 32, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 33, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 34, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 35, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 36, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 37, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 38, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 109, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 110, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 111, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 112, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 113, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 114, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 188, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 189, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 190, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 192, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 193, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 379, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 380, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 381, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 382, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 383, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 384, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 385, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 386, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 448, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 449, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 450, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 451, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 452, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 603, because occupancy 0.350 <= existing 0.650 in 2bv5A Skipped atom 604, because occupancy 0.350 <= existing 0.650 in 2bv5A Skipped atom 1242, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1243, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1244, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1245, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1246, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1247, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1248, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1273, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1274, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1275, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1276, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1277, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1637, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1638, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1639, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1640, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1641, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1642, because occupancy 0.500 <= existing 0.500 in 2bv5A Bad short name: OCD for alphabet: pdb_atoms Bad short name: OCD for alphabet: pdb_atoms Skipped atom 1801, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1802, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1803, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 1804, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 2046, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 2047, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 2048, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 2049, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 2050, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 2051, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 2145, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 2146, because occupancy 0.500 <= existing 0.500 in 2bv5A Skipped atom 2147, because occupancy 0.500 <= existing 0.500 in 2bv5A # T0305 read from 2bv5A/T0305-2bv5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2bv5A read from 2bv5A/T0305-2bv5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 2bv5A to template set # found chain 2bv5A in template set Warning: unaligning (T0305)Y96 because of BadResidue code BAD_PEPTIDE in next template residue (2bv5A)I346 Warning: unaligning (T0305)I97 because of BadResidue code BAD_PEPTIDE at template residue (2bv5A)I346 Warning: unaligning (T0305)R133 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bv5A)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bv5A)K383 Warning: unaligning (T0305)H234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bv5A)S473 Warning: unaligning (T0305)S236 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bv5A)S473 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bv5A)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bv5A)I515 T0305 5 :MKQFVKHI 2bv5A 263 :AEELHEKA T0305 18 :NNQHGFSEDFEEVQRCTA 2bv5A 271 :LDPFLLQAEFFEIPMNFV T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 2bv5A 289 :DPKEYDIPGLVRKNRYKTILPNPHSRVCLTSPD T0305 74 :KDSKHSDYINANYVDGYNKA 2bv5A 322 :PDDPLSSYINANYIRGYGGE T0305 94 :KA 2bv5A 343 :KV T0305 98 :ATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKG 2bv5A 347 :ATQGPIVSTVADFWRMVWQEHTPIIVMITNIEEMN T0305 136 :CDQYWP 2bv5A 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bv5A 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 2bv5A 421 :GTEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEA T0305 224 :RMPETGPVLV 2bv5A 461 :EGPHCAPIIV T0305 237 :AGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bv5A 474 :AGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bv5A 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 12 number of extra gaps= 3 total=81 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1038828826.pdb -s /var/tmp/to_scwrl_1038828826.seq -o /var/tmp/from_scwrl_1038828826.pdb > /var/tmp/scwrl_1038828826.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1038828826.pdb Number of alignments=10 # command:# reading script from file T0305.t06.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fh7A/T0305-2fh7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2fh7A/T0305-2fh7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fh7A read from 2fh7A/T0305-2fh7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fh7A in template set Warning: unaligning (T0305)M225 because of BadResidue code BAD_PEPTIDE in next template residue (2fh7A)P1580 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE at template residue (2fh7A)P1580 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEV 2fh7A 1371 :PPIPIADMAEHTERLKANDSLKLSQEYESI T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2fh7A 1401 :DPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVILQPIEGIMG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2fh7A 1444 :SDYINANYVDGYRRQNAYIATQGPLPETFGDFWRMVWEQRSATIVMMTRLEEKSRIKCDQYWPNRGTETYGFIQVTLLDTIELATFCVRTFSLHKNG T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 2fh7A 1541 :SSEKREVRQFQFTAWPDHGVPEYPTPFLAFLRRVKTCN T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2fh7A 1581 :DAGPIVVHCSAGVGRTGCFIVIDAMLERIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYSFIHEALLEAVGC Number of specific fragments extracted= 5 number of extra gaps= 1 total=86 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_173506518.pdb -s /var/tmp/to_scwrl_173506518.seq -o /var/tmp/from_scwrl_173506518.pdb > /var/tmp/scwrl_173506518.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_173506518.pdb Number of alignments=11 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f71A/T0305-2f71A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2f71A/T0305-2f71A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f71A read from 2f71A/T0305-2f71A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f71A in template set Warning: unaligning (T0305)S4 because first residue in template chain is (2f71A)E2 Warning: unaligning (T0305)R69 because of BadResidue code BAD_PEPTIDE in next template residue (2f71A)Q61 Warning: unaligning (T0305)S76 because of BadResidue code BAD_PEPTIDE at template residue (2f71A)Q61 Warning: unaligning (T0305)K77 because of BadResidue code BAD_PEPTIDE at template residue (2f71A)E62 Warning: unaligning (T0305)H78 because of BadResidue code BAD_PEPTIDE at template residue (2f71A)D63 T0305 5 :MKQFVKHIGE 2f71A 3 :MEKEFEQIDK T0305 18 :N 2f71A 13 :S T0305 21 :HGFSEDFEEVQRCTA 2f71A 14 :GSWAAIYQDIRHEAS T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKL 2f71A 29 :DFPCRVAKLPKNKNRNRYRDVSPFDHSRIKL T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2f71A 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 2f71A 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 2f71A 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 2f71A 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 2f71A 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2f71A 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 10 number of extra gaps= 1 total=96 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_31797565.pdb -s /var/tmp/to_scwrl_31797565.seq -o /var/tmp/from_scwrl_31797565.pdb > /var/tmp/scwrl_31797565.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_31797565.pdb Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pa1A/T0305-1pa1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 1pa1A/T0305-1pa1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1pa1A read from 1pa1A/T0305-1pa1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1pa1A in training set Warning: unaligning (T0305)F2 because first residue in template chain is (1pa1A)K497 Warning: unaligning (T0305)R69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1pa1A)Q561 Warning: unaligning (T0305)S76 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1pa1A)Q561 Warning: unaligning (T0305)K77 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1pa1A)E562 Warning: unaligning (T0305)H78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1pa1A)D563 Warning: unaligning (T0305)M204 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1pa1A)G683 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1pa1A)G683 T0305 3 :QSMKQFVKHIGELYSNNQ 1pa1A 498 :LEFMEMEKEFEQIDKSGS T0305 23 :FSEDFEEVQRC 1pa1A 516 :WAAIYQDIRHE T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1pa1A 527 :ASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKL T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pa1A 564 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pa1A 629 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pa1A 640 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPD 1pa1A 665 :TQETREILHFHYTTWPD T0305 206 :VPEYALPVLTFVRRSSAA 1pa1A 684 :VPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pa1A 704 :LSPEHGPVVVHDSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1pa1A 744 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 10 number of extra gaps= 2 total=106 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_456651794.pdb -s /var/tmp/to_scwrl_456651794.seq -o /var/tmp/from_scwrl_456651794.pdb > /var/tmp/scwrl_456651794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_456651794.pdb Number of alignments=13 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b49A/T0305-2b49A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2b49A/T0305-2b49A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b49A read from 2b49A/T0305-2b49A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b49A in template set Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2b49A)I715 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2b49A)I715 T0305 25 :EDFEEVQRCTADM 2b49A 648 :IQFEQLYRKKPGL T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 2b49A 661 :AITFAKLPQNLDKNRYKDVLPYDTTRVLLQ T0305 76 :SK 2b49A 691 :GN T0305 79 :SDYINANYVDG 2b49A 693 :EDYINASYVNM T0305 90 :YNKAKA 2b49A 708 :ANLVNK T0305 98 :ATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2b49A 716 :ATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWPD T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2b49A 762 :PDVMNHGGFHIQCQSEDCTIAYVSREMLVTNTQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2b49A 795 :TGEEHTVTHLQYVAWPDHGVPDDSSDFLEFVNYVRSLRV T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2b49A 834 :DSEPVLVHCSAGIGRTGVLVTMETAMCLTERNLPIYPLDIVRKMRDQRAMMVQTSSQYKFVCEAILRVYEE Number of specific fragments extracted= 9 number of extra gaps= 1 total=115 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_80329499.pdb -s /var/tmp/to_scwrl_80329499.seq -o /var/tmp/from_scwrl_80329499.pdb > /var/tmp/scwrl_80329499.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_80329499.pdb Number of alignments=14 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wchA/T0305-1wchA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wchA expands to /projects/compbio/data/pdb/1wch.pdb.gz 1wchA:Skipped atom 68, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 69, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 70, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 71, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 72, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 192, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 193, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 234, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 235, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 615, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 616, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 617, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 618, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 1070, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 1071, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 1923, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 1924, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 1925, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 1986, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 1987, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 2167, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 2168, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 2169, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 2170, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 2203, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 2204, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 2205, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 2206, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 2375, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 2376, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 2377, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 2378, because occupancy 0.500 <= existing 0.500 in 1wchA Skipped atom 2379, because occupancy 0.500 <= existing 0.500 in 1wchA # T0305 read from 1wchA/T0305-1wchA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1wchA read from 1wchA/T0305-1wchA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1wchA to template set # found chain 1wchA in template set T0305 4 :SMKQFVKHIGELYSNNQ 1wchA 2196 :NLKSVIRVLRGLLDQGI T0305 23 :FSEDFEEVQRCTADM 1wchA 2213 :PSKELENLQELKPLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYV 1wchA 2257 :GDEGGYINASFI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2271 :PVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEY 1wchA 2328 :GKTTMV T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2335 :NRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 9 number of extra gaps= 0 total=124 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_578187134.pdb -s /var/tmp/to_scwrl_578187134.seq -o /var/tmp/from_scwrl_578187134.pdb > /var/tmp/scwrl_578187134.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_578187134.pdb Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bzlA/T0305-2bzlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2bzlA/T0305-2bzlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2bzlA read from 2bzlA/T0305-2bzlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2bzlA in template set Warning: unaligning (T0305)Y16 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 T0305 5 :MK 2bzlA 897 :FR T0305 11 :HIGEL 2bzlA 899 :TLKKK T0305 23 :FSEDFEEVQRCTAD 2bzlA 909 :VFTEYEQIPKKKAN T0305 39 :ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 923 :GIFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDG 2bzlA 960 :TGYINASHIKV T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 973 :GGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 9 number of extra gaps= 0 total=133 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_691451546.pdb -s /var/tmp/to_scwrl_691451546.seq -o /var/tmp/from_scwrl_691451546.pdb > /var/tmp/scwrl_691451546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_691451546.pdb Number of alignments=16 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bv5A/T0305-2bv5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2bv5A/T0305-2bv5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2bv5A read from 2bv5A/T0305-2bv5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2bv5A in template set Warning: unaligning (T0305)Y96 because of BadResidue code BAD_PEPTIDE in next template residue (2bv5A)I346 Warning: unaligning (T0305)I97 because of BadResidue code BAD_PEPTIDE at template residue (2bv5A)I346 Warning: unaligning (T0305)R134 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bv5A)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bv5A)K383 Warning: unaligning (T0305)H234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bv5A)S473 Warning: unaligning (T0305)S236 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bv5A)S473 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bv5A)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bv5A)I515 T0305 2 :FQSMKQFVKHI 2bv5A 260 :VLQAEELHEKA T0305 18 :NNQHGFSEDFEEV 2bv5A 271 :LDPFLLQAEFFEI T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bv5A 284 :PMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDP T0305 75 :DSKHSDYINANYVDGYNKA 2bv5A 323 :DDPLSSYINANYIRGYGGE T0305 94 :KA 2bv5A 343 :KV T0305 98 :ATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKG 2bv5A 347 :ATQGPIVSTVADFWRMVWQEHTPIIVMITNIEEMN T0305 136 :CDQYWP 2bv5A 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bv5A 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bv5A 421 :GTEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLV 2bv5A 463 :PHCAPIIV T0305 237 :AGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bv5A 474 :AGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAIL 2bv5A 516 :QTCEQYQFVHHVMSLYEK Number of specific fragments extracted= 12 number of extra gaps= 3 total=145 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1578716907.pdb -s /var/tmp/to_scwrl_1578716907.seq -o /var/tmp/from_scwrl_1578716907.pdb > /var/tmp/scwrl_1578716907.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1578716907.pdb Number of alignments=17 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g4wR/T0305-1g4wR-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1g4wR expands to /projects/compbio/data/pdb/1g4w.pdb.gz 1g4wR:# T0305 read from 1g4wR/T0305-1g4wR-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1g4wR read from 1g4wR/T0305-1g4wR-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1g4wR to template set # found chain 1g4wR in template set Warning: unaligning (T0305)A35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1g4wR)P297 Warning: unaligning (T0305)E42 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1g4wR)P297 T0305 5 :MKQFVKHIGE 1g4wR 266 :LTQAVKKIHV T0305 23 :FSEDFEEVQRC 1g4wR 276 :IAKELKNVTAE T0305 34 :T 1g4wR 289 :K T0305 43 :HSNHPENKHKNRYI 1g4wR 298 :QTMSGPTLGLARFA T0305 57 :NILAYDHSRVKLR 1g4wR 314 :SIPINQQTQVKLS T0305 72 :P 1g4wR 327 :D T0305 79 :SDYINANYVDGYNKA 1g4wR 328 :GMPVPVNTLTFDGKP T0305 95 :AYIATQGPLKS 1g4wR 343 :VALAGSYPKNT T0305 106 :TFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYW 1g4wR 356 :ALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPPYF T0305 143 :ENSEEYGNIIVTLKSTKI 1g4wR 391 :RGSYTFGEVHTNSQKVSS T0305 161 :HACYTVRRFSIRN 1g4wR 412 :GEAIDQYNMQLSC T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1g4wR 425 :GEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1g4wR 472 :SDKHLPMIHCLGGVGRTGTMAAALVL T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1g4wR 498 :KDNPHSNLEQVRADFRDSRNN T0305 277 :LVQTEEQYIFIHDALLEAI 1g4wR 520 :MLEDASQFVQLKAMQAQLL Number of specific fragments extracted= 15 number of extra gaps= 0 total=160 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_62299853.pdb -s /var/tmp/to_scwrl_62299853.seq -o /var/tmp/from_scwrl_62299853.pdb > /var/tmp/scwrl_62299853.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_62299853.pdb Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1oheA/T0305-1oheA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1oheA expands to /projects/compbio/data/pdb/1ohe.pdb.gz 1oheA:# T0305 read from 1oheA/T0305-1oheA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1oheA read from 1oheA/T0305-1oheA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1oheA to template set # found chain 1oheA in template set T0305 1 :YFQSMKQFVKHIGELYSN 1oheA 175 :FYITLLDCFHAVKKAMQY T0305 19 :NQHGF 1oheA 196 :NFNSF T0305 24 :SEDFEEVQR 1oheA 202 :LDEYEHYEK T0305 47 :PE 1oheA 211 :AE T0305 62 :DHSRVKLR 1oheA 213 :NGDLNWII T0305 90 :YN 1oheA 221 :PD T0305 95 :AYIATQGPLKS 1oheA 223 :RFIAFCGPHSR T0305 106 :TFEDFWRMIWEQNTGIIVMITNLVEKGRR 1oheA 244 :SPETYIQYFKNHNVTTIIRLNKRMYDAKR T0305 179 :G 1oheA 273 :F T0305 187 :RQNER 1oheA 274 :TDAGF T0305 195 :QYHYTQWPDMGVPEY 1oheA 279 :DHHDLFFADGSTPTD T0305 215 :TFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSM 1oheA 294 :AIVKEFLDICENAEGAIAVHSKAGLGRTGTLIACYIM T0305 257 :DKSTVNVLGFLKHIRTQRNYLVQ 1oheA 331 :KHYRMTAAETIAWVRICRPGSVI T0305 281 :EEQYIFIHDALLEAIL 1oheA 354 :GPQQQFLVMKQTNLWL Number of specific fragments extracted= 14 number of extra gaps= 0 total=174 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_2000033061.pdb -s /var/tmp/to_scwrl_2000033061.seq -o /var/tmp/from_scwrl_2000033061.pdb > /var/tmp/scwrl_2000033061.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2000033061.pdb Number of alignments=19 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rxdA/T0305-1rxdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rxdA expands to /projects/compbio/data/pdb/1rxd.pdb.gz 1rxdA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0305 read from 1rxdA/T0305-1rxdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1rxdA read from 1rxdA/T0305-1rxdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1rxdA to template set # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 92 :KAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1rxdA 14 :KNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 175 :KVKKGQK 1rxdA 53 :DTTLVEK T0305 187 :RQ 1rxdA 60 :EG T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLV 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAF T0305 280 :TEEQYIFI 1rxdA 141 :NSKQLLYL Number of specific fragments extracted= 8 number of extra gaps= 0 total=182 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1933084302.pdb -s /var/tmp/to_scwrl_1933084302.seq -o /var/tmp/from_scwrl_1933084302.pdb > /var/tmp/scwrl_1933084302.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1933084302.pdb Number of alignments=20 # command:# reading script from file T0305.t2k.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1larA/T0305-1larA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 1larA/T0305-1larA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1larA read from 1larA/T0305-1larA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1larA in template set T0305 11 :HIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1larA 1311 :LADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1370 :SIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1larA 1472 :SGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=185 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_87522686.pdb -s /var/tmp/to_scwrl_87522686.seq -o /var/tmp/from_scwrl_87522686.pdb > /var/tmp/scwrl_87522686.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_87522686.pdb Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fh7A/T0305-2fh7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2fh7A/T0305-2fh7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fh7A read from 2fh7A/T0305-2fh7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fh7A in template set Warning: unaligning (T0305)M225 because of BadResidue code BAD_PEPTIDE in next template residue (2fh7A)P1580 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE at template residue (2fh7A)P1580 T0305 8 :F 2fh7A 1381 :H T0305 15 :LYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2fh7A 1382 :TERLKANDSLKLSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVILQ T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2fh7A 1437 :PIEGIMGSDYINANYVDGYRRQNAYIATQGPLPETFGDFWRMVWEQRSATIVMMTRLEEKSRIKCDQYWPNRGTETYGFIQVTLLDTIELATFCVRTFSLHK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 2fh7A 1539 :NGSSEKREVRQFQFTAWPDHGVPEYPTPFLAFLRRVKTCN T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 2fh7A 1581 :DAGPIVVHCSAGVGRTGCFIVIDAMLERIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYSFIHEALLEAV Number of specific fragments extracted= 5 number of extra gaps= 1 total=190 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1098193841.pdb -s /var/tmp/to_scwrl_1098193841.seq -o /var/tmp/from_scwrl_1098193841.pdb > /var/tmp/scwrl_1098193841.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1098193841.pdb Number of alignments=22 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rpmA/T0305-1rpmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rpmA expands to /projects/compbio/data/pdb/1rpm.pdb.gz 1rpmA:# T0305 read from 1rpmA/T0305-1rpmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1rpmA read from 1rpmA/T0305-1rpmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # adding 1rpmA to template set # found chain 1rpmA in template set T0305 13 :GELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1rpmA 887 :QHITQMKCAEGYGFKEEYESFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQ T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1rpmA 944 :TIEGDTNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1015 :DTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 4 number of extra gaps= 0 total=194 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1597848431.pdb -s /var/tmp/to_scwrl_1597848431.seq -o /var/tmp/from_scwrl_1597848431.pdb > /var/tmp/scwrl_1597848431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1597848431.pdb Number of alignments=23 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2shpA/T0305-2shpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2shpA/T0305-2shpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2shpA read from 2shpA/T0305-2shpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2shpA in template set Warning: unaligning (T0305)E14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2shpA)G246 Warning: unaligning (T0305)E25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2shpA)G246 Warning: unaligning (T0305)L71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2shpA)S302 Warning: unaligning (T0305)S79 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2shpA)S302 Warning: unaligning (T0305)D80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2shpA)D303 Warning: unaligning (T0305)A93 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2shpA)K324 Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2shpA)I328 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2shpA)I328 Warning: unaligning (T0305)P102 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2shpA)L334 Warning: unaligning (T0305)L103 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2shpA)L334 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2shpA)T411 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2shpA)T411 T0305 6 :KQFVKHIG 2shpA 227 :ESRVRELS T0305 26 :DFEEVQRC 2shpA 247 :FWEEFETL T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2shpA 258 :ECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLH T0305 81 :YINANYVD 2shpA 304 :YINANIIM T0305 94 :KA 2shpA 325 :KS T0305 98 :ATQG 2shpA 329 :ATQG T0305 104 :KSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2shpA 335 :QNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPD T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2shpA 375 :YALKEYGVMRVRNVKESAAHDYTLRELKLSK T0305 184 :PKGR 2shpA 406 :VGQG T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2shpA 412 :ERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2shpA 450 :MDAGPVVVHCSAGIGRTGTFIVIDILIDIIRE T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2shpA 485 :DCDIDVPKTIQMVRSQRSGMVQTEAQYRSIYMAVQHYIET Number of specific fragments extracted= 12 number of extra gaps= 3 total=206 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_574596534.pdb -s /var/tmp/to_scwrl_574596534.seq -o /var/tmp/from_scwrl_574596534.pdb > /var/tmp/scwrl_574596534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_574596534.pdb Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a5y/T0305-1a5y-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 1a5y/T0305-1a5y-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1a5y read from 1a5y/T0305-1a5y-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1a5y in template set Warning: unaligning (T0305)H234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1a5y)S216 Warning: unaligning (T0305)S236 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1a5y)S216 T0305 13 :GELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1a5y 4 :EKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1a5y 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYG 1a5y 130 :EKEMIFE T0305 150 :NIIVTLKSTKIHACYTVRRFSIRN 1a5y 139 :NLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1a5y 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLV 1a5y 206 :PEHGPVVV T0305 237 :AGVGRTGTYIVIDSMLQQIKDKST 1a5y 217 :AGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1a5y 244 :VDIKKVLLDMRKFRMGLIATAEQLRFSYLAVIEGAK Number of specific fragments extracted= 8 number of extra gaps= 0 total=214 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_701539807.pdb -s /var/tmp/to_scwrl_701539807.seq -o /var/tmp/from_scwrl_701539807.pdb > /var/tmp/scwrl_701539807.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_701539807.pdb Number of alignments=25 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b3oA/T0305-2b3oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2b3oA/T0305-2b3oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b3oA read from 2b3oA/T0305-2b3oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b3oA in template set Warning: unaligning (T0305)F23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2b3oA)F244 T0305 24 :SEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2b3oA 245 :WEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQ T0305 71 :LPGKDSKHSDYINANYVD 2b3oA 291 :GRDSNIPGSDYINANYIK T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2b3oA 316 :ENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2b3oA 369 :GMQRAYGPYSVTNCGEHDTTEYKLRTLQVSP T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2b3oA 400 :LDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2b3oA 444 :PHAGPIIVHCSAGIGRTGTIIVIDMLMENIST T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2b3oA 479 :DCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIE Number of specific fragments extracted= 7 number of extra gaps= 0 total=221 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1143849809.pdb -s /var/tmp/to_scwrl_1143849809.seq -o /var/tmp/from_scwrl_1143849809.pdb > /var/tmp/scwrl_1143849809.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1143849809.pdb Number of alignments=26 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b49A/T0305-2b49A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2b49A/T0305-2b49A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b49A read from 2b49A/T0305-2b49A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b49A in template set Warning: unaligning (T0305)E25 because first residue in template chain is (2b49A)V646 Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2b49A)I715 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2b49A)I715 T0305 26 :DFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2b49A 647 :LIQFEQLYRKKPGLAITFAKLPQNLDKNRYKDVLPYDTTRVLLQ T0305 77 :KHSDYINANYVDGY 2b49A 691 :GNEDYINASYVNME T0305 91 :NKAKA 2b49A 709 :NLVNK T0305 98 :ATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2b49A 716 :ATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWPD T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2b49A 762 :PDVMNHGGFHIQCQSEDCTIAYVSREMLVTN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 2b49A 793 :TQTGEEHTVTHLQYVAWPDHGVPDDSSDFLEFVNYVRS T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2b49A 831 :LRVDSEPVLVHCSAGIGRTGVLVTMETAMCLTERNLPIYPLDIVRKMRDQRAMMVQTSSQYKFVCEAILRVYE Number of specific fragments extracted= 7 number of extra gaps= 1 total=228 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_934618834.pdb -s /var/tmp/to_scwrl_934618834.seq -o /var/tmp/from_scwrl_934618834.pdb > /var/tmp/scwrl_934618834.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_934618834.pdb Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wchA/T0305-1wchA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 1wchA/T0305-1wchA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1wchA read from 1wchA/T0305-1wchA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1wchA in template set T0305 7 :QFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1wchA 2195 :ANLKSVIRVLRGLLDQGIPSKELENLQELKPLDQCLIGQTKENRRKNRYKNILPYDATRVPLG T0305 77 :KHSDYINANYV 1wchA 2258 :DEGGYINASFI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2271 :PVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLED T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2360 :IQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLT Number of specific fragments extracted= 6 number of extra gaps= 0 total=234 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_2078480868.pdb -s /var/tmp/to_scwrl_2078480868.seq -o /var/tmp/from_scwrl_2078480868.pdb > /var/tmp/scwrl_2078480868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2078480868.pdb Number of alignments=28 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f71A/T0305-2f71A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2f71A/T0305-2f71A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f71A read from 2f71A/T0305-2f71A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f71A in template set Warning: unaligning (T0305)R69 because of BadResidue code BAD_PEPTIDE in next template residue (2f71A)Q61 Warning: unaligning (T0305)S76 because of BadResidue code BAD_PEPTIDE at template residue (2f71A)Q61 Warning: unaligning (T0305)K77 because of BadResidue code BAD_PEPTIDE at template residue (2f71A)E62 Warning: unaligning (T0305)H78 because of BadResidue code BAD_PEPTIDE at template residue (2f71A)D63 T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKL 2f71A 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKL T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2f71A 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYG 2f71A 130 :EKEMIFE T0305 150 :NIIVTLKSTKIHACYTVRRFSIRN 2f71A 139 :NLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2f71A 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 2f71A 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2f71A 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 7 number of extra gaps= 1 total=241 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1244453595.pdb -s /var/tmp/to_scwrl_1244453595.seq -o /var/tmp/from_scwrl_1244453595.pdb > /var/tmp/scwrl_1244453595.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1244453595.pdb Number of alignments=29 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bzlA/T0305-2bzlA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2bzlA/T0305-2bzlA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2bzlA read from 2bzlA/T0305-2bzlA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2bzlA in template set Warning: unaligning (T0305)H11 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)Q20 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)S24 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 12 :IGELYSNN 2bzlA 896 :RFRTLKKK T0305 25 :EDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bzlA 909 :VFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELI T0305 73 :GKDSKHSDYINANYVD 2bzlA 954 :PTKENNTGYINASHIK T0305 89 :GYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 972 :VGGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKH T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1061 :LLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=248 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_196095815.pdb -s /var/tmp/to_scwrl_196095815.seq -o /var/tmp/from_scwrl_196095815.pdb > /var/tmp/scwrl_196095815.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_196095815.pdb Number of alignments=30 # command:# reading script from file T0305.undertaker-align.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fh7A/T0305-2fh7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2fh7A/T0305-2fh7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2fh7A read from 2fh7A/T0305-2fh7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2fh7A in template set Warning: unaligning (T0305)M225 because of BadResidue code BAD_PEPTIDE in next template residue (2fh7A)P1580 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE at template residue (2fh7A)P1580 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEV 2fh7A 1371 :PPIPIADMAEHTERLKANDSLKLSQEYESI T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2fh7A 1401 :DPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVILQPIEGIMG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2fh7A 1444 :SDYINANYVDGYRRQNAYIATQGPLPETFGDFWRMVWEQRSATIVMMTRLEEKSRIKCDQYWPNRGTETYGFIQVTLLDTIELATFCVRTFSLHKNG T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 2fh7A 1541 :SSEKREVRQFQFTAWPDHGVPEYPTPFLAFLRRVKTCN T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2fh7A 1581 :DAGPIVVHCSAGVGRTGCFIVIDAMLERIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYSFIHEALLEAVGC Number of specific fragments extracted= 5 number of extra gaps= 1 total=253 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_819827984.pdb -s /var/tmp/to_scwrl_819827984.seq -o /var/tmp/from_scwrl_819827984.pdb > /var/tmp/scwrl_819827984.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_819827984.pdb Number of alignments=31 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pa1A/T0305-1pa1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 1pa1A/T0305-1pa1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1pa1A read from 1pa1A/T0305-1pa1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1pa1A in training set Warning: unaligning (T0305)F2 because first residue in template chain is (1pa1A)K497 Warning: unaligning (T0305)R69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1pa1A)Q561 Warning: unaligning (T0305)S76 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1pa1A)Q561 Warning: unaligning (T0305)K77 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1pa1A)E562 Warning: unaligning (T0305)H78 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1pa1A)D563 Warning: unaligning (T0305)M204 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1pa1A)G683 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1pa1A)G683 T0305 3 :QSMKQFVKHIGELYSNNQ 1pa1A 498 :LEFMEMEKEFEQIDKSGS T0305 23 :FSEDFEEVQRC 1pa1A 516 :WAAIYQDIRHE T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1pa1A 527 :ASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKL T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pa1A 564 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pa1A 629 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pa1A 640 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPD 1pa1A 665 :TQETREILHFHYTTWPD T0305 206 :VPEYALPVLTFVRRSSAA 1pa1A 684 :VPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pa1A 704 :LSPEHGPVVVHDSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1pa1A 744 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 10 number of extra gaps= 2 total=263 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1456748695.pdb -s /var/tmp/to_scwrl_1456748695.seq -o /var/tmp/from_scwrl_1456748695.pdb > /var/tmp/scwrl_1456748695.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1456748695.pdb Number of alignments=32 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f71A/T0305-2f71A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2f71A/T0305-2f71A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2f71A read from 2f71A/T0305-2f71A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2f71A in template set Warning: unaligning (T0305)S4 because first residue in template chain is (2f71A)E2 Warning: unaligning (T0305)R69 because of BadResidue code BAD_PEPTIDE in next template residue (2f71A)Q61 Warning: unaligning (T0305)S76 because of BadResidue code BAD_PEPTIDE at template residue (2f71A)Q61 Warning: unaligning (T0305)K77 because of BadResidue code BAD_PEPTIDE at template residue (2f71A)E62 Warning: unaligning (T0305)H78 because of BadResidue code BAD_PEPTIDE at template residue (2f71A)D63 T0305 5 :MKQFVKHIGE 2f71A 3 :MEKEFEQIDK T0305 18 :N 2f71A 13 :S T0305 21 :HGFSEDFEEVQRCTA 2f71A 14 :GSWAAIYQDIRHEAS T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKL 2f71A 29 :DFPCRVAKLPKNKNRNRYRDVSPFDHSRIKL T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2f71A 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 2f71A 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 2f71A 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 2f71A 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 2f71A 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2f71A 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 10 number of extra gaps= 1 total=273 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1989352323.pdb -s /var/tmp/to_scwrl_1989352323.seq -o /var/tmp/from_scwrl_1989352323.pdb > /var/tmp/scwrl_1989352323.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1989352323.pdb Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b49A/T0305-2b49A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2b49A/T0305-2b49A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b49A read from 2b49A/T0305-2b49A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b49A in template set Warning: unaligning (T0305)E25 because first residue in template chain is (2b49A)V646 Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2b49A)I715 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2b49A)I715 T0305 26 :DFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2b49A 647 :LIQFEQLYRKKPGLAITFAKLPQNLDKNRYKDVLPYDTTRVLLQ T0305 77 :KHSDYINANYVDGY 2b49A 691 :GNEDYINASYVNME T0305 91 :NKAKA 2b49A 709 :NLVNK T0305 98 :ATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2b49A 716 :ATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWPD T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2b49A 762 :PDVMNHGGFHIQCQSEDCTIAYVSREMLVTN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 2b49A 793 :TQTGEEHTVTHLQYVAWPDHGVPDDSSDFLEFVNYVRS T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2b49A 831 :LRVDSEPVLVHCSAGIGRTGVLVTMETAMCLTERNLPIYPLDIVRKMRDQRAMMVQTSSQYKFVCEAILRVYE Number of specific fragments extracted= 7 number of extra gaps= 1 total=280 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1813511381.pdb -s /var/tmp/to_scwrl_1813511381.seq -o /var/tmp/from_scwrl_1813511381.pdb > /var/tmp/scwrl_1813511381.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1813511381.pdb Number of alignments=34 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bzlA/T0305-2bzlA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2bzlA/T0305-2bzlA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2bzlA read from 2bzlA/T0305-2bzlA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2bzlA in template set Warning: unaligning (T0305)H11 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)Q20 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)S24 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 12 :IGELYSNN 2bzlA 896 :RFRTLKKK T0305 25 :EDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bzlA 909 :VFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELI T0305 73 :GKDSKHSDYINANYVD 2bzlA 954 :PTKENNTGYINASHIK T0305 89 :GYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 972 :VGGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKH T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1061 :LLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=287 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1336194464.pdb -s /var/tmp/to_scwrl_1336194464.seq -o /var/tmp/from_scwrl_1336194464.pdb > /var/tmp/scwrl_1336194464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1336194464.pdb Number of alignments=35 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wchA/T0305-1wchA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 1wchA/T0305-1wchA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1wchA read from 1wchA/T0305-1wchA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1wchA in template set T0305 4 :SMKQFVKHIGELYSNNQ 1wchA 2196 :NLKSVIRVLRGLLDQGI T0305 23 :FSEDFEEVQRCTADM 1wchA 2213 :PSKELENLQELKPLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYV 1wchA 2257 :GDEGGYINASFI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2271 :PVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEY 1wchA 2328 :GKTTMV T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2335 :NRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 9 number of extra gaps= 0 total=296 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_831099451.pdb -s /var/tmp/to_scwrl_831099451.seq -o /var/tmp/from_scwrl_831099451.pdb > /var/tmp/scwrl_831099451.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_831099451.pdb Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bv5A/T0305-2bv5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2bv5A/T0305-2bv5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2bv5A read from 2bv5A/T0305-2bv5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2bv5A in template set Warning: unaligning (T0305)Y96 because of BadResidue code BAD_PEPTIDE in next template residue (2bv5A)I346 Warning: unaligning (T0305)I97 because of BadResidue code BAD_PEPTIDE at template residue (2bv5A)I346 Warning: unaligning (T0305)R133 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bv5A)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bv5A)K383 Warning: unaligning (T0305)H234 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bv5A)S473 Warning: unaligning (T0305)S236 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bv5A)S473 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bv5A)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bv5A)I515 T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bv5A 271 :LDPFLLQAEFFEIPMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLT T0305 71 :LPGKDSKHSDYINANYVDGY 2bv5A 319 :SPDPDDPLSSYINANYIRGY T0305 91 :NKAKA 2bv5A 340 :GEEKV T0305 98 :ATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKG 2bv5A 347 :ATQGPIVSTVADFWRMVWQEHTPIIVMITNIEEMN T0305 136 :CDQYWPT 2bv5A 384 :CTEYWPE T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bv5A 391 :EQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bv5A 421 :GTEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLV 2bv5A 463 :PHCAPIIV T0305 237 :AGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bv5A 474 :AGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAIL 2bv5A 516 :QTCEQYQFVHHVMSLYEK Number of specific fragments extracted= 10 number of extra gaps= 3 total=306 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1468519715.pdb -s /var/tmp/to_scwrl_1468519715.seq -o /var/tmp/from_scwrl_1468519715.pdb > /var/tmp/scwrl_1468519715.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1468519715.pdb Number of alignments=37 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1larA/T0305-1larA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 1larA/T0305-1larA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 1larA read from 1larA/T0305-1larA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 1larA in template set T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEV 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESI T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1334 :DPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSG T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1larA 1474 :SSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAAT Number of specific fragments extracted= 4 number of extra gaps= 0 total=310 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_421825361.pdb -s /var/tmp/to_scwrl_421825361.seq -o /var/tmp/from_scwrl_421825361.pdb > /var/tmp/scwrl_421825361.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_421825361.pdb Number of alignments=38 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b3oA/T0305-2b3oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2b3oA/T0305-2b3oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2b3oA read from 2b3oA/T0305-2b3oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2b3oA in template set Warning: unaligning (T0305)F23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2b3oA)F244 T0305 24 :SEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2b3oA 245 :WEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQ T0305 71 :LPGKDSKHSDYINANYVD 2b3oA 291 :GRDSNIPGSDYINANYIK T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2b3oA 316 :ENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2b3oA 369 :GMQRAYGPYSVTNCGEHDTTEYKLRTLQVSP T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2b3oA 400 :LDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2b3oA 444 :PHAGPIIVHCSAGIGRTGTIIVIDMLMENIST T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2b3oA 479 :DCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIE Number of specific fragments extracted= 7 number of extra gaps= 0 total=317 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_321869343.pdb -s /var/tmp/to_scwrl_321869343.seq -o /var/tmp/from_scwrl_321869343.pdb > /var/tmp/scwrl_321869343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_321869343.pdb Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2shpA/T0305-2shpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2shpA/T0305-2shpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # 2shpA read from 2shpA/T0305-2shpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m # found chain 2shpA in template set Warning: unaligning (T0305)E14 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2shpA)G246 Warning: unaligning (T0305)E25 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2shpA)G246 Warning: unaligning (T0305)L71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2shpA)S302 Warning: unaligning (T0305)S79 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2shpA)S302 Warning: unaligning (T0305)D80 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2shpA)D303 Warning: unaligning (T0305)A93 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2shpA)K324 Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2shpA)I328 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2shpA)I328 Warning: unaligning (T0305)P102 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2shpA)L334 Warning: unaligning (T0305)L103 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2shpA)L334 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2shpA)T411 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2shpA)T411 T0305 6 :KQFVKHIG 2shpA 227 :ESRVRELS T0305 26 :DFEEVQRC 2shpA 247 :FWEEFETL T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2shpA 258 :ECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLH T0305 81 :YINANYVD 2shpA 304 :YINANIIM T0305 94 :KA 2shpA 325 :KS T0305 98 :ATQG 2shpA 329 :ATQG T0305 104 :KSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2shpA 335 :QNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPD T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2shpA 375 :YALKEYGVMRVRNVKESAAHDYTLRELKLSK T0305 184 :PKGR 2shpA 406 :VGQG T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2shpA 412 :ERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2shpA 450 :MDAGPVVVHCSAGIGRTGTFIVIDILIDIIRE T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2shpA 485 :DCDIDVPKTIQMVRSQRSGMVQTEAQYRSIYMAVQHYIET Number of specific fragments extracted= 12 number of extra gaps= 3 total=329 # request to SCWRL produces command: ulimit -t 268 ; scwrl3 -i /var/tmp/to_scwrl_1731563036.pdb -s /var/tmp/to_scwrl_1731563036.seq -o /var/tmp/from_scwrl_1731563036.pdb > /var/tmp/scwrl_1731563036.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1731563036.pdb Number of alignments=40 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0305//projects/compbio/experiments/protein-predict/casp7/constraints/T0305/manyalignments.under or /projects/compbio/experiments/protein-predict/casp7/T0305//projects/compbio/experiments/protein-predict/casp7/constraints/T0305/manyalignments.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints/T0305/manyalignments.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints/T0305/manyalignments.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bzlA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 2bzlA/merged-a2m # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)G13 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)F23 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)K1029 T0305 14 :ELYSNNQH 2bzlA 896 :RFRTLKKK T0305 24 :SEDFEEVQRCTADM 2bzlA 910 :FTEYEQIPKKKANG T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bzlA 924 :IFSTAALPENAERSRIREVVPYEENRVELIPTKE T0305 77 :KHSDYINANYVDGYNKAKA 2bzlA 958 :NNTGYINASHIKVVVGGAE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 979 :YIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLS T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1064 :GQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=337 Number of alignments=41 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)G13 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)Q20 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)F23 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)K1029 T0305 14 :ELYSNN 2bzlA 898 :RTLKKK T0305 24 :SEDFEEVQRCTADM 2bzlA 910 :FTEYEQIPKKKANG T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bzlA 924 :IFSTAALPENAERSRIREVVPYEENRVELIPTKE T0305 77 :KHSDYINANYVDGYNKAKA 2bzlA 958 :NNTGYINASHIKVVVGGAE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 979 :YIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLS T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1064 :GQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=345 Number of alignments=42 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)H21 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)F23 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)K1029 T0305 18 :NNQ 2bzlA 901 :KKK T0305 24 :SEDFEEVQRCTADM 2bzlA 910 :FTEYEQIPKKKANG T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bzlA 924 :IFSTAALPENAERSRIREVVPYEENRVELIPTKE T0305 77 :KHSDYINANYVDGYNKAKA 2bzlA 958 :NNTGYINASHIKVVVGGAE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 979 :YIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLS T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1064 :GQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=353 Number of alignments=43 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)F23 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)K1029 T0305 24 :SEDFEEVQRCTADM 2bzlA 910 :FTEYEQIPKKKANG T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bzlA 924 :IFSTAALPENAERSRIREVVPYEENRVELIPTKE T0305 77 :KHSDYINANYVDGYNKAKA 2bzlA 958 :NNTGYINASHIKVVVGGAE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 979 :YIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLS T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1064 :GQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=360 Number of alignments=44 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)G13 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)F23 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 14 :ELYSNNQH 2bzlA 896 :RFRTLKKK T0305 24 :SEDFEEVQRCTA 2bzlA 910 :FTEYEQIPKKKA T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 922 :NGIFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDGY 2bzlA 960 :TGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVK 2bzlA 1031 :SSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSG T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1065 :QERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=368 Number of alignments=45 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)F23 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 8 :FVKHIGEL 2bzlA 896 :RFRTLKKK T0305 24 :SEDFEEVQRCTA 2bzlA 910 :FTEYEQIPKKKA T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 922 :NGIFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDGY 2bzlA 960 :TGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVK 2bzlA 1031 :SSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSG T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1065 :QERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=376 Number of alignments=46 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 23 :FSEDFEEVQRCTA 2bzlA 909 :VFTEYEQIPKKKA T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 922 :NGIFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDGY 2bzlA 960 :TGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVK 2bzlA 1031 :SSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSG T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1065 :QERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 7 number of extra gaps= 0 total=383 Number of alignments=47 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)F23 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 24 :SEDFEEVQRCTA 2bzlA 910 :FTEYEQIPKKKA T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 922 :NGIFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDGY 2bzlA 960 :TGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVK 2bzlA 1031 :SSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSG T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1065 :QERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=390 Number of alignments=48 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)Q20 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)S24 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 T0305 14 :ELYSNN 2bzlA 898 :RTLKKK T0305 25 :EDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bzlA 909 :VFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELIPTKE T0305 77 :KHSDYINANYVDGY 2bzlA 958 :NNTGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKH T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 2bzlA 1061 :LLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQS T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1109 :GTKNRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 7 number of extra gaps= 0 total=397 Number of alignments=49 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)Q20 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)S24 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 T0305 14 :ELYSNN 2bzlA 898 :RTLKKK T0305 25 :EDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bzlA 909 :VFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELIPTKE T0305 77 :KHSDYINANYVDGY 2bzlA 958 :NNTGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKH T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 2bzlA 1061 :LLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQS T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1109 :GTKNRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 7 number of extra gaps= 0 total=404 Number of alignments=50 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)Q20 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)S24 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 T0305 16 :YSNN 2bzlA 900 :LKKK T0305 25 :EDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bzlA 909 :VFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELIPTKE T0305 77 :KHSDYINANYVDGY 2bzlA 958 :NNTGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKH T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 2bzlA 1061 :LLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQS T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1109 :GTKNRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 7 number of extra gaps= 0 total=411 Number of alignments=51 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)S24 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 T0305 25 :EDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bzlA 909 :VFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELIPTKE T0305 77 :KHSDYINANYVDGY 2bzlA 958 :NNTGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKH T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 2bzlA 1061 :LLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQS T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2bzlA 1109 :GTKNRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=417 Number of alignments=52 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)K1029 T0305 47 :PENKHKNRYINILAYDHSRVKLRP 2bzlA 931 :PENAERSRIREVVPYEENRVELIP T0305 74 :KDSKHSDYINANYVDGY 2bzlA 955 :TKENNTGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFL Number of specific fragments extracted= 6 number of extra gaps= 0 total=423 Number of alignments=53 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 44 :SNHPENKHKNRYINILAYDHSRVKLRPLP 2bzlA 928 :AALPENAERSRIREVVPYEENRVELIPTK T0305 76 :SKHSDYINANYVDGY 2bzlA 957 :ENNTGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNT 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHL T0305 180 :Q 2bzlA 1062 :L T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTF 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSY T0305 217 :VRRSSAARMPET 2bzlA 1099 :VRRHTNSMLEGT T0305 229 :GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 2bzlA 1115 :PPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQF Number of specific fragments extracted= 8 number of extra gaps= 0 total=431 Number of alignments=54 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)K10 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)E143 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)K1029 T0305 11 :HIGELYSN 2bzlA 896 :RFRTLKKK T0305 23 :FSEDFEEVQRCTADM 2bzlA 909 :VFTEYEQIPKKKANG T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 924 :IFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDGY 2bzlA 960 :TGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1031 :SSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=439 Number of alignments=55 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)K10 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)E143 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)K1029 T0305 11 :HIGELYSN 2bzlA 896 :RFRTLKKK T0305 23 :FSEDFEEVQRCTADM 2bzlA 909 :VFTEYEQIPKKKANG T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 924 :IFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDGY 2bzlA 960 :TGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1031 :SSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=447 Number of alignments=56 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)K10 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)K1029 T0305 11 :HIGELYSN 2bzlA 896 :RFRTLKKK T0305 23 :FSEDFEEVQRCTADM 2bzlA 909 :VFTEYEQIPKKKANG T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGK 2bzlA 924 :IFSTAALPENAERSRIREVVPYEENRVELIPTKEN T0305 78 :HSDYINANYVDG 2bzlA 959 :NTGYINASHIKV T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 973 :GGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=455 Number of alignments=57 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)Y16 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)E143 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)K1029 T0305 8 :FVKHIGEL 2bzlA 896 :RFRTLKKK T0305 23 :FSEDFEEVQRCTADM 2bzlA 909 :VFTEYEQIPKKKANG T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 924 :IFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDG 2bzlA 960 :TGYINASHIKV T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 973 :GGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1031 :SSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=463 Number of alignments=58 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)K10 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)E143 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)K1029 T0305 11 :HIGELYSN 2bzlA 896 :RFRTLKKK T0305 23 :FSEDFEEVQRCTADM 2bzlA 909 :VFTEYEQIPKKKANG T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 924 :IFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDGY 2bzlA 960 :TGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1031 :SSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=471 Number of alignments=59 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)K10 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)E143 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)K1029 T0305 11 :HIGELYSN 2bzlA 896 :RFRTLKKK T0305 23 :FSEDFEEVQRCTADM 2bzlA 909 :VFTEYEQIPKKKANG T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 924 :IFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDGY 2bzlA 960 :TGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1031 :SSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=479 Number of alignments=60 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)K10 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)K1029 T0305 11 :HIGELYSN 2bzlA 896 :RFRTLKKK T0305 23 :FSEDFEEVQRCTADM 2bzlA 909 :VFTEYEQIPKKKANG T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGK 2bzlA 924 :IFSTAALPENAERSRIREVVPYEENRVELIPTKEN T0305 78 :HSDYINANYVDG 2bzlA 959 :NTGYINASHIKV T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 973 :GGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=487 Number of alignments=61 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)Y16 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)E143 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)K1029 T0305 8 :FVKHIGEL 2bzlA 896 :RFRTLKKK T0305 23 :FSEDFEEVQRCTADM 2bzlA 909 :VFTEYEQIPKKKANG T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 924 :IFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDG 2bzlA 960 :TGYINASHIKV T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 973 :GGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1031 :SSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=495 Number of alignments=62 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)K10 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 11 :HIGELYSN 2bzlA 896 :RFRTLKKK T0305 23 :FSEDFEEVQ 2bzlA 909 :VFTEYEQIP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 918 :KKKANGIFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDG 2bzlA 960 :TGYINASHIKV T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 973 :GGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=503 Number of alignments=63 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)K10 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 T0305 11 :HIGELYSN 2bzlA 896 :RFRTLKKK T0305 23 :FSEDFEEVQ 2bzlA 909 :VFTEYEQIP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 2bzlA 918 :KKKANGIFSTAALPENAERSRIREVVPYEENRVELIPTK T0305 74 :KDS 2bzlA 957 :ENN T0305 79 :SDYINANYVDG 2bzlA 960 :TGYINASHIKV T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 973 :GGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 9 number of extra gaps= 0 total=512 Number of alignments=64 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)K10 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 T0305 11 :HIGELYSN 2bzlA 896 :RFRTLKKK T0305 23 :FSEDFEEVQ 2bzlA 909 :VFTEYEQIP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 2bzlA 918 :KKKANGIFSTAALPENAERSRIREVVPYEENRVELIPTK T0305 74 :KDS 2bzlA 957 :ENN T0305 79 :SDYINANYVDG 2bzlA 960 :TGYINASHIKV T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 973 :GGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 9 number of extra gaps= 0 total=521 Number of alignments=65 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)Y16 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 T0305 9 :VKHIGEL 2bzlA 897 :FRTLKKK T0305 23 :FSEDFEEVQRCTAD 2bzlA 909 :VFTEYEQIPKKKAN T0305 39 :ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 923 :GIFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDG 2bzlA 960 :TGYINASHIKV T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 973 :GGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=529 Number of alignments=66 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)V9 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)N18 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 10 :KHIGELYS 2bzlA 896 :RFRTLKKK T0305 23 :FSEDFEEVQ 2bzlA 909 :VFTEYEQIP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 918 :KKKANGIFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDG 2bzlA 960 :TGYINASHIKV T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 973 :GGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 8 number of extra gaps= 0 total=537 Number of alignments=67 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)N18 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 T0305 15 :LYS 2bzlA 901 :KKK T0305 23 :FSEDFEEVQ 2bzlA 909 :VFTEYEQIP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 2bzlA 918 :KKKANGIFSTAALPENAERSRIREVVPYEENRVELIPTK T0305 74 :KDS 2bzlA 957 :ENN T0305 79 :SDYINANYVDG 2bzlA 960 :TGYINASHIKV T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 973 :GGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 9 number of extra gaps= 0 total=546 Number of alignments=68 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 T0305 11 :HIGELYSN 2bzlA 896 :RFRTLKKK T0305 23 :FSEDFEEVQ 2bzlA 909 :VFTEYEQIP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 2bzlA 918 :KKKANGIFSTAALPENAERSRIREVVPYEENRVELIPTK T0305 74 :KDS 2bzlA 957 :ENN T0305 79 :SDYINANYVDG 2bzlA 960 :TGYINASHIKV T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 973 :GGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 9 number of extra gaps= 0 total=555 Number of alignments=69 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)Y16 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)G22 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 T0305 5 :MK 2bzlA 897 :FR T0305 11 :HIGEL 2bzlA 899 :TLKKK T0305 23 :FSEDFEEVQRCTAD 2bzlA 909 :VFTEYEQIPKKKAN T0305 39 :ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 2bzlA 923 :GIFSTAALPENAERSRIREVVPYEENRVELIPTKENN T0305 79 :SDYINANYVDG 2bzlA 960 :TGYINASHIKV T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 973 :GGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLL T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1063 :SGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 9 number of extra gaps= 0 total=564 Number of alignments=70 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)H11 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)Q20 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)S24 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 12 :IGELYSNN 2bzlA 896 :RFRTLKKK T0305 25 :EDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bzlA 909 :VFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELI T0305 73 :GKDSKHSDYINANYVDGY 2bzlA 954 :PTKENNTGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKH T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1061 :LLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 7 number of extra gaps= 0 total=571 Number of alignments=71 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)H11 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)Q20 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)S24 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 12 :IGELYSNN 2bzlA 896 :RFRTLKKK T0305 25 :EDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bzlA 909 :VFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELI T0305 73 :GKDSKHSDYINANYVDGY 2bzlA 954 :PTKENNTGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKH T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1061 :LLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 7 number of extra gaps= 0 total=578 Number of alignments=72 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)H11 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)Q20 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)S24 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 12 :IGELYSNN 2bzlA 896 :RFRTLKKK T0305 25 :EDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bzlA 909 :VFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELI T0305 73 :GKDSKHSDYINANYVDGY 2bzlA 954 :PTKENNTGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKH T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1061 :LLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 7 number of extra gaps= 0 total=585 Number of alignments=73 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)H11 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)Q20 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)S24 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 12 :IGELYSNN 2bzlA 896 :RFRTLKKK T0305 25 :EDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bzlA 909 :VFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELI T0305 73 :GKDSKHSDYINANYVD 2bzlA 954 :PTKENNTGYINASHIK T0305 89 :GYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 972 :VGGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKH T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1061 :LLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 7 number of extra gaps= 0 total=592 Number of alignments=74 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)S24 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 25 :EDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bzlA 909 :VFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELI T0305 73 :GKDSKHSDYINANYVDGY 2bzlA 954 :PTKENNTGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKH T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1061 :LLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFL Number of specific fragments extracted= 6 number of extra gaps= 0 total=598 Number of alignments=75 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)Q20 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)S24 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 17 :SNN 2bzlA 901 :KKK T0305 25 :EDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bzlA 909 :VFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELI T0305 73 :GKDSKHSDYINANYVDGY 2bzlA 954 :PTKENNTGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKH T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1061 :LLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFL Number of specific fragments extracted= 7 number of extra gaps= 0 total=605 Number of alignments=76 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)H11 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)Q20 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)S24 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 12 :IGELYSNN 2bzlA 896 :RFRTLKKK T0305 25 :EDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bzlA 909 :VFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELI T0305 73 :GKDSKHSDYINANYVDGY 2bzlA 954 :PTKENNTGYINASHIKVV T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 974 :GAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKH T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1061 :LLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQN Number of specific fragments extracted= 7 number of extra gaps= 0 total=612 Number of alignments=77 # 2bzlA read from 2bzlA/merged-a2m # found chain 2bzlA in template set Warning: unaligning (T0305)H11 because first residue in template chain is (2bzlA)E895 Warning: unaligning (T0305)Q20 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)M908 Warning: unaligning (T0305)S24 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bzlA)M908 Warning: unaligning (T0305)T142 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bzlA)K1029 T0305 12 :IGELYSNN 2bzlA 896 :RFRTLKKK T0305 25 :EDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bzlA 909 :VFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELI T0305 73 :GKDSKHSDYINANYVD 2bzlA 954 :PTKENNTGYINASHIK T0305 89 :GYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2bzlA 972 :VGGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bzlA 1030 :HSSATYGKFKVTTKFRTDSVCYATTGLKVKH T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bzlA 1061 :LLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2bzlA 1112 :NRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=619 Number of alignments=78 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bzcA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bzcA expands to /projects/compbio/data/pdb/1bzc.pdb.gz 1bzcA:# T0305 read from 1bzcA/merged-a2m # 1bzcA read from 1bzcA/merged-a2m # adding 1bzcA to template set # found chain 1bzcA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1bzcA)E2 T0305 8 :FVKHIGELYSN 1bzcA 3 :MEKEFEQIDKS T0305 21 :HGFSEDFEEVQRCTAD 1bzcA 14 :GSWAAIYQDIRHEASD T0305 39 :ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1bzcA 30 :FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1bzcA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEY 1bzcA 131 :KEMIF T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNT 1bzcA 138 :TNLKLTLISEDIKSYYTVRQLELENL T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1bzcA 164 :TTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1bzcA 203 :SLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1bzcA 242 :SSVDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEGAK Number of specific fragments extracted= 9 number of extra gaps= 0 total=628 Number of alignments=79 # 1bzcA read from 1bzcA/merged-a2m # found chain 1bzcA in template set T0305 10 :KHIGELYSN 1bzcA 5 :KEFEQIDKS T0305 21 :HGFSEDFEEVQRCTAD 1bzcA 14 :GSWAAIYQDIRHEASD T0305 39 :ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1bzcA 30 :FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1bzcA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEY 1bzcA 131 :KEMIF T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNT 1bzcA 138 :TNLKLTLISEDIKSYYTVRQLELENL T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1bzcA 164 :TTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1bzcA 203 :SLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1bzcA 242 :SSVDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEGA Number of specific fragments extracted= 9 number of extra gaps= 0 total=637 Number of alignments=80 # 1bzcA read from 1bzcA/merged-a2m # found chain 1bzcA in template set T0305 47 :PENKHKNRYINILAYDHSRVKLR 1bzcA 38 :PKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 1bzcA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTKV 1bzcA 138 :TNLKLTLISEDIKSYYTVRQLELENLTT T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFV 1bzcA 166 :QETREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1bzcA 198 :VRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCL T0305 253 :QQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1bzcA 236 :DKRKDPSSVDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=643 Number of alignments=81 # 1bzcA read from 1bzcA/merged-a2m # found chain 1bzcA in template set T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1bzcA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 1bzcA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTK 1bzcA 138 :TNLKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFV 1bzcA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1bzcA 198 :VRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCL T0305 253 :QQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1bzcA 236 :DKRKDPSSVDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=649 Number of alignments=82 # 1bzcA read from 1bzcA/merged-a2m # found chain 1bzcA in template set Warning: unaligning (T0305)V9 because first residue in template chain is (1bzcA)E2 T0305 10 :KHIGELYSNNQHGFSEDFEEVQRCTADM 1bzcA 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1bzcA 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1bzcA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1bzcA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1bzcA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1bzcA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1bzcA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1bzcA 244 :VDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEGAKF Number of specific fragments extracted= 8 number of extra gaps= 0 total=657 Number of alignments=83 # 1bzcA read from 1bzcA/merged-a2m # found chain 1bzcA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1bzcA)E2 T0305 8 :FVKHIGEL 1bzcA 3 :MEKEFEQI T0305 18 :NNQHGFSEDFEEVQRCTADM 1bzcA 11 :DKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1bzcA 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1bzcA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1bzcA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1bzcA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1bzcA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1bzcA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1bzcA 244 :VDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=666 Number of alignments=84 # 1bzcA read from 1bzcA/merged-a2m # found chain 1bzcA in template set T0305 13 :GELYSNNQHGFSEDFEEVQRCTADM 1bzcA 6 :EFEQIDKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1bzcA 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1bzcA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1bzcA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1bzcA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1bzcA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1bzcA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1bzcA 244 :VDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEGAK Number of specific fragments extracted= 8 number of extra gaps= 0 total=674 Number of alignments=85 # 1bzcA read from 1bzcA/merged-a2m # found chain 1bzcA in template set T0305 18 :NNQHGFSEDFEEVQRCTADM 1bzcA 11 :DKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1bzcA 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1bzcA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1bzcA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1bzcA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1bzcA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1bzcA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1bzcA 244 :VDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEGA Number of specific fragments extracted= 8 number of extra gaps= 0 total=682 Number of alignments=86 # 1bzcA read from 1bzcA/merged-a2m # found chain 1bzcA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1bzcA)E2 T0305 8 :FVKHIGELYSNNQ 1bzcA 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1bzcA 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1bzcA 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1bzcA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1bzcA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1bzcA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1bzcA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1bzcA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1bzcA 244 :VDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=691 Number of alignments=87 # 1bzcA read from 1bzcA/merged-a2m # found chain 1bzcA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1bzcA)E2 T0305 8 :FVKHIGELYSNNQ 1bzcA 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1bzcA 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1bzcA 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1bzcA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1bzcA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1bzcA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1bzcA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1bzcA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1bzcA 244 :VDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=700 Number of alignments=88 # 1bzcA read from 1bzcA/merged-a2m # found chain 1bzcA in template set T0305 13 :GELYSNNQHGFSEDFEEVQ 1bzcA 6 :EFEQIDKSGSWAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1bzcA 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1bzcA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1bzcA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1bzcA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1bzcA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1bzcA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1bzcA 244 :VDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIE Number of specific fragments extracted= 8 number of extra gaps= 0 total=708 Number of alignments=89 # 1bzcA read from 1bzcA/merged-a2m # found chain 1bzcA in template set T0305 15 :LY 1bzcA 10 :ID T0305 19 :NQHGFSEDFEEVQ 1bzcA 12 :KSGSWAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1bzcA 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1bzcA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1bzcA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1bzcA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1bzcA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1bzcA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1bzcA 244 :VDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEG Number of specific fragments extracted= 9 number of extra gaps= 0 total=717 Number of alignments=90 # 1bzcA read from 1bzcA/merged-a2m # found chain 1bzcA in template set Warning: unaligning (T0305)H11 because first residue in template chain is (1bzcA)E2 T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1bzcA 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1bzcA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1bzcA 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1bzcA 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1bzcA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1bzcA 242 :SSVDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEGAKF Number of specific fragments extracted= 6 number of extra gaps= 0 total=723 Number of alignments=91 # 1bzcA read from 1bzcA/merged-a2m # found chain 1bzcA in template set Warning: unaligning (T0305)H11 because first residue in template chain is (1bzcA)E2 T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1bzcA 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1bzcA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1bzcA 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1bzcA 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1bzcA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1bzcA 242 :SSVDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEGAKF Number of specific fragments extracted= 6 number of extra gaps= 0 total=729 Number of alignments=92 # 1bzcA read from 1bzcA/merged-a2m # found chain 1bzcA in template set T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1bzcA 13 :SGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1bzcA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1bzcA 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1bzcA 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1bzcA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1bzcA 242 :SSVDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=735 Number of alignments=93 # 1bzcA read from 1bzcA/merged-a2m # found chain 1bzcA in template set T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1bzcA 8 :EQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1bzcA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1bzcA 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1bzcA 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1bzcA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1bzcA 242 :SSVDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=741 Number of alignments=94 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1c83A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1c83A expands to /projects/compbio/data/pdb/1c83.pdb.gz 1c83A:# T0305 read from 1c83A/merged-a2m # 1c83A read from 1c83A/merged-a2m # adding 1c83A to template set # found chain 1c83A in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1c83A)E2 Warning: unaligning (T0305)F8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)M3 Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)R187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 9 :VKHIGELYSN 1c83A 4 :EKEFEQIDKS T0305 21 :HGFSEDFEEVQRCTAD 1c83A 14 :GSWAAIYQDIRHEASD T0305 39 :ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1c83A 30 :FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKA 1c83A 64 :NDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEY 1c83A 131 :KEMIF T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNT 1c83A 138 :TNLKLTLISEDIKTYYTVRQLELENL T0305 186 :G 1c83A 164 :T T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFLFKVRE T0305 223 :ARMPETGPVLV 1c83A 203 :SLSPEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDK 1c83A 216 :SAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQR 1c83A 242 :SSVDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLEAIL 1c83A 260 :LIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 14 number of extra gaps= 5 total=755 Number of alignments=95 # 1c83A read from 1c83A/merged-a2m # found chain 1c83A in template set Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)R187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 10 :KHIGELYSN 1c83A 5 :KEFEQIDKS T0305 21 :HGFSEDFEEVQRCTAD 1c83A 14 :GSWAAIYQDIRHEASD T0305 39 :ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1c83A 30 :FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKA 1c83A 64 :NDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEY 1c83A 131 :KEMIF T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNT 1c83A 138 :TNLKLTLISEDIKTYYTVRQLELENL T0305 186 :G 1c83A 164 :T T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFLFKVRE T0305 223 :ARMPETGPVLV 1c83A 203 :SLSPEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDK 1c83A 216 :SAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQR 1c83A 242 :SSVDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLEAI 1c83A 260 :LIQTADQLRFSYLAVIEGA Number of specific fragments extracted= 14 number of extra gaps= 5 total=769 Number of alignments=96 # 1c83A read from 1c83A/merged-a2m # found chain 1c83A in template set Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)V176 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 47 :PENKHKNRYINILAYDHSRVKLR 1c83A 38 :PKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKA 1c83A 61 :QEDNDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTK 1c83A 138 :TNLKLTLISEDIKTYYTVRQLELENLT T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFV 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSSAARMPETGPVLV 1c83A 198 :VRESGSLSPEHGPVVV T0305 236 :SAGVGRTGTYIVIDSML 1c83A 216 :SAGIGRSGTFCLADTCL T0305 253 :QQIKDKSTVNVLGFLKHIRTQR 1c83A 236 :DKRKDPSSVDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLEA 1c83A 260 :LIQTADQLRFSYLAVIEG Number of specific fragments extracted= 10 number of extra gaps= 5 total=779 Number of alignments=97 # 1c83A read from 1c83A/merged-a2m # found chain 1c83A in template set Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)R187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1c83A 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKA 1c83A 61 :QEDNDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTK 1c83A 138 :TNLKLTLISEDIKTYYTVRQLELENLT T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFV 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSSAARMPETGPVLV 1c83A 198 :VRESGSLSPEHGPVVV T0305 236 :SAGVGRTGTYIVIDSML 1c83A 216 :SAGIGRSGTFCLADTCL T0305 253 :QQIKDKSTVNVLGFLKHIRTQR 1c83A 236 :DKRKDPSSVDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLEA 1c83A 260 :LIQTADQLRFSYLAVIEG Number of specific fragments extracted= 10 number of extra gaps= 5 total=789 Number of alignments=98 # 1c83A read from 1c83A/merged-a2m # found chain 1c83A in template set Warning: unaligning (T0305)V9 because first residue in template chain is (1c83A)E2 Warning: unaligning (T0305)K10 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)M3 Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)R187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 11 :HIGELYSNNQHGFSEDFEEVQRCTADM 1c83A 4 :EKEFEQIDKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1c83A 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKA 1c83A 61 :QEDNDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1c83A 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1c83A 140 :LKLTLISEDIKTYYTVRQLELENLT T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLV 1c83A 204 :LSPEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1c83A 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQR 1c83A 244 :VDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLEAILG 1c83A 260 :LIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 12 number of extra gaps= 5 total=801 Number of alignments=99 # 1c83A read from 1c83A/merged-a2m # found chain 1c83A in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1c83A)E2 Warning: unaligning (T0305)F8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)M3 Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)R187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 9 :VKHIGEL 1c83A 4 :EKEFEQI T0305 18 :NNQHGFSEDFEEVQRCTADM 1c83A 11 :DKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1c83A 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKA 1c83A 61 :QEDNDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1c83A 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1c83A 140 :LKLTLISEDIKTYYTVRQLELENLT T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLV 1c83A 204 :LSPEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1c83A 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQR 1c83A 244 :VDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLEAILG 1c83A 260 :LIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 13 number of extra gaps= 5 total=814 Number of alignments=100 # 1c83A read from 1c83A/merged-a2m # found chain 1c83A in template set Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)R187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 13 :GELYSNNQHGFSEDFEEVQRCTADM 1c83A 6 :EFEQIDKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1c83A 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKA 1c83A 61 :QEDNDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1c83A 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1c83A 140 :LKLTLISEDIKTYYTVRQLELENLT T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLV 1c83A 204 :LSPEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1c83A 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQR 1c83A 244 :VDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLEAIL 1c83A 260 :LIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 12 number of extra gaps= 5 total=826 Number of alignments=101 # 1c83A read from 1c83A/merged-a2m # found chain 1c83A in template set Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)R187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 18 :NNQHGFSEDFEEVQRCTADM 1c83A 11 :DKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1c83A 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKA 1c83A 61 :QEDNDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1c83A 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1c83A 140 :LKLTLISEDIKTYYTVRQLELENLT T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLV 1c83A 204 :LSPEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1c83A 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQR 1c83A 244 :VDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLEAI 1c83A 260 :LIQTADQLRFSYLAVIEGA Number of specific fragments extracted= 12 number of extra gaps= 5 total=838 Number of alignments=102 # 1c83A read from 1c83A/merged-a2m # found chain 1c83A in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1c83A)E2 Warning: unaligning (T0305)F8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)M3 Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)R187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 9 :VKHIGELYSNNQ 1c83A 4 :EKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1c83A 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1c83A 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKA 1c83A 64 :NDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1c83A 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1c83A 140 :LKLTLISEDIKTYYTVRQLELENLT T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLV 1c83A 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1c83A 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQR 1c83A 244 :VDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLEAILG 1c83A 260 :LIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 13 number of extra gaps= 5 total=851 Number of alignments=103 # 1c83A read from 1c83A/merged-a2m # found chain 1c83A in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1c83A)E2 Warning: unaligning (T0305)F8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)M3 Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)R187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 9 :VKHIGELYSNNQ 1c83A 4 :EKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1c83A 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1c83A 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKA 1c83A 64 :NDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1c83A 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1c83A 140 :LKLTLISEDIKTYYTVRQLELENLT T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLV 1c83A 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1c83A 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQR 1c83A 244 :VDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLEAILG 1c83A 260 :LIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 13 number of extra gaps= 5 total=864 Number of alignments=104 # 1c83A read from 1c83A/merged-a2m # found chain 1c83A in template set Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)R187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 13 :GELYSNNQHGFSEDFEEVQ 1c83A 6 :EFEQIDKSGSWAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1c83A 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKA 1c83A 64 :NDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1c83A 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1c83A 140 :LKLTLISEDIKTYYTVRQLELENLT T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLV 1c83A 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1c83A 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQR 1c83A 244 :VDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLE 1c83A 260 :LIQTADQLRFSYLAVIE Number of specific fragments extracted= 12 number of extra gaps= 5 total=876 Number of alignments=105 # 1c83A read from 1c83A/merged-a2m # found chain 1c83A in template set Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)R187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 15 :LY 1c83A 10 :ID T0305 19 :NQHGFSEDFEEVQ 1c83A 12 :KSGSWAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1c83A 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKA 1c83A 64 :NDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1c83A 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1c83A 140 :LKLTLISEDIKTYYTVRQLELENLT T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLV 1c83A 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1c83A 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQR 1c83A 244 :VDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLEA 1c83A 260 :LIQTADQLRFSYLAVIEG Number of specific fragments extracted= 13 number of extra gaps= 5 total=889 Number of alignments=106 # 1c83A read from 1c83A/merged-a2m # found chain 1c83A in template set Warning: unaligning (T0305)H11 because first residue in template chain is (1c83A)E2 Warning: unaligning (T0305)I12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)M3 Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)R187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 13 :GELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1c83A 4 :EKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKA 1c83A 61 :QEDNDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1c83A 132 :EMIFEDTNLKLTLISEDIKTYYTVRQLELEN T0305 185 :KG 1c83A 163 :LT T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLV 1c83A 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDK 1c83A 216 :SAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQR 1c83A 242 :SSVDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLEAILG 1c83A 260 :LIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 11 number of extra gaps= 5 total=900 Number of alignments=107 # 1c83A read from 1c83A/merged-a2m # found chain 1c83A in template set Warning: unaligning (T0305)H11 because first residue in template chain is (1c83A)E2 Warning: unaligning (T0305)I12 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)M3 Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)R187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 13 :GELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1c83A 4 :EKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKA 1c83A 61 :QEDNDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1c83A 132 :EMIFEDTNLKLTLISEDIKTYYTVRQLELEN T0305 185 :KG 1c83A 163 :LT T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLV 1c83A 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDK 1c83A 216 :SAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQR 1c83A 242 :SSVDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLEAILG 1c83A 260 :LIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 11 number of extra gaps= 5 total=911 Number of alignments=108 # 1c83A read from 1c83A/merged-a2m # found chain 1c83A in template set Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)R187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1c83A 13 :SGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKA 1c83A 61 :QEDNDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1c83A 132 :EMIFEDTNLKLTLISEDIKTYYTVRQLELEN T0305 185 :KG 1c83A 163 :LT T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLV 1c83A 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDK 1c83A 216 :SAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQR 1c83A 242 :SSVDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLE 1c83A 260 :LIQTADQLRFSYLAVIE Number of specific fragments extracted= 11 number of extra gaps= 5 total=922 Number of alignments=109 # 1c83A read from 1c83A/merged-a2m # found chain 1c83A in template set Warning: unaligning (T0305)Y96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)I82 Warning: unaligning (T0305)I97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)I82 Warning: unaligning (T0305)E108 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1c83A)H94 Warning: unaligning (T0305)D109 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1c83A)H94 Warning: unaligning (T0305)R187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)Q166 Warning: unaligning (T0305)Q188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)Q166 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)E167 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE in next template residue (1c83A)C215 Warning: unaligning (T0305)C235 because of BadResidue code BAD_PEPTIDE at template residue (1c83A)C215 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1c83A)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1c83A)G259 T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1c83A 8 :EQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKA 1c83A 61 :QEDNDYINASLIKMEEAQRS T0305 98 :ATQGPLKSTF 1c83A 83 :LTQGPLPNTC T0305 110 :FWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1c83A 95 :FWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1c83A 132 :EMIFEDTNLKLTLISEDIKTYYTVRQLELEN T0305 185 :KG 1c83A 163 :LT T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1c83A 168 :TREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLV 1c83A 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDK 1c83A 216 :SAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQR 1c83A 242 :SSVDIKKVLLDMRKFR T0305 277 :LVQTEEQYIFIHDALLE 1c83A 260 :LIQTADQLRFSYLAVIE Number of specific fragments extracted= 11 number of extra gaps= 5 total=933 Number of alignments=110 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bijA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bijA expands to /projects/compbio/data/pdb/2bij.pdb.gz 2bijA:Skipped atom 617, because occupancy 0.350 <= existing 0.650 in 2bijA Skipped atom 618, because occupancy 0.350 <= existing 0.650 in 2bijA Skipped atom 1635, because occupancy 0.500 <= existing 0.500 in 2bijA Skipped atom 1636, because occupancy 0.500 <= existing 0.500 in 2bijA Skipped atom 1637, because occupancy 0.500 <= existing 0.500 in 2bijA Skipped atom 1638, because occupancy 0.500 <= existing 0.500 in 2bijA Skipped atom 1639, because occupancy 0.500 <= existing 0.500 in 2bijA # T0305 read from 2bijA/merged-a2m # 2bijA read from 2bijA/merged-a2m # adding 2bijA to template set # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTA 2bijA -4 :FQSMSRVLQAEELHEKALDPFLLQAEFFEIPMNFV T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bijA 289 :DPKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDP T0305 75 :DSKHSD 2bijA 323 :DDPLSS T0305 83 :NANYVDGYNKAKA 2bijA 331 :NANYIRGYGGEEK T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 345 :YIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWP 2bijA 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNT 2bijA 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKSG T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAA T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 462 :GPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=943 Number of alignments=111 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTA 2bijA -4 :FQSMSRVLQAEELHEKALDPFLLQAEFFEIPMNFV T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bijA 289 :DPKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDP T0305 75 :DSKHSD 2bijA 323 :DDPLSS T0305 83 :NANYVDGYNKAKA 2bijA 331 :NANYIRGYGGEEK T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 345 :YIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWP 2bijA 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNT 2bijA 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKSG T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAA T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 462 :GPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=953 Number of alignments=112 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 2 :FQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTA 2bijA -3 :QSMSRVLQAEELHEKALDPFLLQAEFFEIPMNFV T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bijA 289 :DPKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDP T0305 75 :DSKHSD 2bijA 323 :DDPLSS T0305 83 :NANYVDGYNKAKA 2bijA 331 :NANYIRGYGGEEK T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 345 :YIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWP 2bijA 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNT 2bijA 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKSG T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAA T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 462 :GPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=963 Number of alignments=113 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQRCTA 2bijA -1 :MSRVLQAEELHEKALDPFLLQAEFFEIPMNFV T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bijA 289 :DPKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDP T0305 75 :DSKHSD 2bijA 323 :DDPLSS T0305 83 :NANYVDGYNKAKA 2bijA 331 :NANYIRGYGGEEK T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 345 :YIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWP 2bijA 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNT 2bijA 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKSG T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAA T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 462 :GPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAIL 2bijA 516 :QTCEQYQFVHHVMSLYEK Number of specific fragments extracted= 10 number of extra gaps= 3 total=973 Number of alignments=114 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTAD 2bijA -4 :FQSMSRVLQAEELHEKALDPFLLQAEFFEIPMNFVD T0305 41 :AEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bijA 290 :PKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDP T0305 75 :DSKHSD 2bijA 323 :DDPLSS T0305 83 :NANYVDGYN 2bijA 331 :NANYIRGYG T0305 92 :KAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 2bijA 341 :EEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNI T0305 136 :CDQYWP 2bijA 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 460 :QEGPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 11 number of extra gaps= 3 total=984 Number of alignments=115 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTAD 2bijA -4 :FQSMSRVLQAEELHEKALDPFLLQAEFFEIPMNFVD T0305 41 :AEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bijA 290 :PKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDP T0305 75 :DSKHSD 2bijA 323 :DDPLSS T0305 83 :NANYVDGYN 2bijA 331 :NANYIRGYG T0305 92 :KAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 2bijA 341 :EEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNI T0305 136 :CDQYWP 2bijA 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 460 :QEGPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 11 number of extra gaps= 3 total=995 Number of alignments=116 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQRCTAD 2bijA -1 :MSRVLQAEELHEKALDPFLLQAEFFEIPMNFVD T0305 41 :AEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bijA 290 :PKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDP T0305 75 :DSKHSD 2bijA 323 :DDPLSS T0305 83 :NANYVDGYN 2bijA 331 :NANYIRGYG T0305 92 :KAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 2bijA 341 :EEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNI T0305 136 :CDQYWP 2bijA 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 460 :QEGPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLE 2bijA 516 :QTCEQYQFVHHVMSL Number of specific fragments extracted= 11 number of extra gaps= 3 total=1006 Number of alignments=117 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 6 :KQFVKHIGELYSNNQHGFSEDFEEVQRCTAD 2bijA 259 :RVLQAEELHEKALDPFLLQAEFFEIPMNFVD T0305 41 :AEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bijA 290 :PKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDP T0305 75 :DSKHSD 2bijA 323 :DDPLSS T0305 83 :NANYVDGYN 2bijA 331 :NANYIRGYG T0305 92 :KAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 2bijA 341 :EEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNI T0305 136 :CDQYWP 2bijA 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 460 :QEGPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLE 2bijA 516 :QTCEQYQFVHHVMSL Number of specific fragments extracted= 11 number of extra gaps= 3 total=1017 Number of alignments=118 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)K131 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)V176 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 47 :PENKHKNRYINILAYDHSRVKLRP 2bijA 296 :PGLVRKNRYKTILPNPHSRVCLTS T0305 72 :PGKDSKHSD 2bijA 320 :PDPDDPLSS T0305 83 :NANYVDGY 2bijA 331 :NANYIRGY T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITN 2bijA 340 :GEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITN T0305 129 :VE 2bijA 377 :IE T0305 136 :CDQYWPTENS 2bijA 384 :CTEYWPEEQV T0305 147 :EYGNIIVTLKSTKIHACYTVRRFSIRNT 2bijA 394 :AYDGVEITVQKVIHTEDYRLRLISLKSG T0305 177 :KKGQK 2bijA 424 :ERGLK T0305 195 :QYHYTQWPDMGVPEYALPVLTFVRRSSAA 2bijA 429 :HYWFTSWPDQKTPDRAPPLLHLVREVEEA T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 461 :EGPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDAL 2bijA 516 :QTCEQYQFVHHVM Number of specific fragments extracted= 11 number of extra gaps= 3 total=1028 Number of alignments=119 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 35 :ADMNIT 2bijA 283 :IPMNFV T0305 41 :AEHSNHPENKHKNRYINILAYDHSRVKLRP 2bijA 290 :PKEYDIPGLVRKNRYKTILPNPHSRVCLTS T0305 72 :PGKDSKHSD 2bijA 320 :PDPDDPLSS T0305 83 :NANYVDGYN 2bijA 331 :NANYIRGYG T0305 92 :KAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 341 :EEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPTENS 2bijA 384 :CTEYWPEEQV T0305 147 :EYGNIIVTLKSTKIHACYTVRRFSIRNT 2bijA 394 :AYDGVEITVQKVIHTEDYRLRLISLKSG T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEA T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 461 :EGPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDA 2bijA 516 :QTCEQYQFVHHV Number of specific fragments extracted= 10 number of extra gaps= 3 total=1038 Number of alignments=120 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 1 :YFQSMKQFVKHIGELYSN 2bijA -5 :YFQSMSRVLQAEELHEKA T0305 19 :NQHGFSEDFEEVQRCTA 2bijA 272 :DPFLLQAEFFEIPMNFV T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 2bijA 289 :DPKEYDIPGLVRKNRYKTILPNPHSRVCLT T0305 71 :LPGKDSKHSD 2bijA 319 :SPDPDDPLSS T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPTENSE 2bijA 384 :CTEYWPEEQVA T0305 148 :YGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 395 :YDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 12 number of extra gaps= 3 total=1050 Number of alignments=121 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 8 :FVKHIGELYSN 2bijA -4 :FQSMSRVLQAE T0305 19 :NQHGFSEDFEEVQRCTADMN 2bijA 272 :DPFLLQAEFFEIPMNFVDPK T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLR 2bijA 292 :EYDIPGLVRKNRYKTILPNPHSRVCLT T0305 71 :LPGKDSKHSD 2bijA 319 :SPDPDDPLSS T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPTENS 2bijA 384 :CTEYWPEEQV T0305 147 :EYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 394 :AYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 12 number of extra gaps= 3 total=1062 Number of alignments=122 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 10 :KHIGE 2bijA 264 :EELHE T0305 16 :YSNNQHGFSEDFEEVQRCTADM 2bijA 269 :KALDPFLLQAEFFEIPMNFVDP T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLP 2bijA 291 :KEYDIPGLVRKNRYKTILPNPHSRVCLTSPD T0305 74 :KDSKHSD 2bijA 322 :PDDPLSS T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPTEN 2bijA 384 :CTEYWPEEQ T0305 146 :EEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 393 :VAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 12 number of extra gaps= 3 total=1074 Number of alignments=123 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 10 :KHIGELYS 2bijA 264 :EELHEKAL T0305 19 :NQHGFSEDFEEVQRCTA 2bijA 272 :DPFLLQAEFFEIPMNFV T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 2bijA 289 :DPKEYDIPGLVRKNRYKTILPNPHSRVCLT T0305 75 :DSKHSD 2bijA 319 :SPDPDD T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPT 2bijA 384 :CTEYWPE T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 391 :EQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEA T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 461 :EGPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 12 number of extra gaps= 3 total=1086 Number of alignments=124 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 19 :NQHGFSEDFEEVQRCTA 2bijA 272 :DPFLLQAEFFEIPMNFV T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 2bijA 289 :DPKEYDIPGLVRKNRYKTILPNPHSRVCLT T0305 71 :LPGKDSKHSD 2bijA 319 :SPDPDDPLSS T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPTENSE 2bijA 384 :CTEYWPEEQVA T0305 148 :YGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 395 :YDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEA 2bijA 516 :QTCEQYQFVHHVMSLY Number of specific fragments extracted= 11 number of extra gaps= 3 total=1097 Number of alignments=125 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 19 :NQHGFSEDFEEVQRCTADMN 2bijA 272 :DPFLLQAEFFEIPMNFVDPK T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLR 2bijA 292 :EYDIPGLVRKNRYKTILPNPHSRVCLT T0305 71 :LPGKDSKHSD 2bijA 319 :SPDPDDPLSS T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPTENS 2bijA 384 :CTEYWPEEQV T0305 147 :EYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 394 :AYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAI 2bijA 516 :QTCEQYQFVHHVMSLYE Number of specific fragments extracted= 11 number of extra gaps= 3 total=1108 Number of alignments=126 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 17 :SNNQHGFSEDFEEVQRCTADM 2bijA 270 :ALDPFLLQAEFFEIPMNFVDP T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLP 2bijA 291 :KEYDIPGLVRKNRYKTILPNPHSRVCLTSPD T0305 74 :KDSKHSD 2bijA 322 :PDDPLSS T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPTEN 2bijA 384 :CTEYWPEEQ T0305 146 :EEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 393 :VAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAIL 2bijA 516 :QTCEQYQFVHHVMSLYEK Number of specific fragments extracted= 11 number of extra gaps= 3 total=1119 Number of alignments=127 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 10 :KHIGELYS 2bijA 264 :EELHEKAL T0305 19 :NQHGFSEDFEEVQRCTA 2bijA 272 :DPFLLQAEFFEIPMNFV T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 2bijA 289 :DPKEYDIPGLVRKNRYKTILPNPHSRVCLT T0305 75 :DSKHSD 2bijA 319 :SPDPDD T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPT 2bijA 384 :CTEYWPE T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 391 :EQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEA T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 461 :EGPHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 12 number of extra gaps= 3 total=1131 Number of alignments=128 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 1 :YFQSMKQFVKHIGELYSN 2bijA -5 :YFQSMSRVLQAEELHEKA T0305 19 :NQHGFSEDFEEVQ 2bijA 272 :DPFLLQAEFFEIP T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bijA 285 :MNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLT T0305 71 :LPGKDSKHSD 2bijA 319 :SPDPDDPLSS T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWP 2bijA 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 12 number of extra gaps= 3 total=1143 Number of alignments=129 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 8 :FVKHIGELY 2bijA 260 :VLQAEELHE T0305 17 :SNNQHGFSEDFEEVQRC 2bijA 270 :ALDPFLLQAEFFEIPMN T0305 35 :AD 2bijA 287 :FV T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bijA 289 :DPKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDP T0305 75 :DSKHSD 2bijA 323 :DDPLSS T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPTEN 2bijA 384 :CTEYWPEEQ T0305 146 :EEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 393 :VAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 13 number of extra gaps= 3 total=1156 Number of alignments=130 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQ 2bijA 261 :LQAEELHEKALDPFLLQAEFFEIP T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bijA 285 :MNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDP T0305 75 :DSKHSD 2bijA 323 :DDPLSS T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWP 2bijA 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 11 number of extra gaps= 3 total=1167 Number of alignments=131 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 4 :SMKQFVKH 2bijA 262 :QAEELHEK T0305 17 :SNNQHGFSEDFEEV 2bijA 270 :ALDPFLLQAEFFEI T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRP 2bijA 284 :PMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLTS T0305 76 :SKHSD 2bijA 320 :PDPDD T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWP 2bijA 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 12 number of extra gaps= 3 total=1179 Number of alignments=132 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 16 :YSNNQHGFSEDFEEVQ 2bijA 269 :KALDPFLLQAEFFEIP T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bijA 285 :MNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLT T0305 71 :LPGKDSKHSD 2bijA 319 :SPDPDDPLSS T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWP 2bijA 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEA 2bijA 516 :QTCEQYQFVHHVMSLY Number of specific fragments extracted= 11 number of extra gaps= 3 total=1190 Number of alignments=133 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 16 :YSNNQHGFSEDFEEVQR 2bijA 269 :KALDPFLLQAEFFEIPM T0305 34 :TAD 2bijA 286 :NFV T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bijA 289 :DPKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDP T0305 75 :DSKHSD 2bijA 323 :DDPLSS T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPTEN 2bijA 384 :CTEYWPEEQ T0305 146 :EEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 393 :VAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAI 2bijA 516 :QTCEQYQFVHHVMSLYE Number of specific fragments extracted= 12 number of extra gaps= 3 total=1202 Number of alignments=134 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 6 :KQFVK 2bijA 264 :EELHE T0305 16 :YSNNQHGFSEDFEEVQ 2bijA 269 :KALDPFLLQAEFFEIP T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 2bijA 285 :MNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLTSPDP T0305 75 :DSKHSD 2bijA 323 :DDPLSS T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWP 2bijA 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAIL 2bijA 516 :QTCEQYQFVHHVMSLYEK Number of specific fragments extracted= 12 number of extra gaps= 3 total=1214 Number of alignments=135 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 2 :FQSMKQFVKH 2bijA 260 :VLQAEELHEK T0305 17 :SNNQHGFSEDFEEV 2bijA 270 :ALDPFLLQAEFFEI T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRP 2bijA 284 :PMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLTS T0305 76 :SKHSD 2bijA 320 :PDPDD T0305 83 :NANYVDGYNKA 2bijA 331 :NANYIRGYGGE T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 343 :KVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWP 2bijA 384 :CTEYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 390 :EEQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 12 number of extra gaps= 3 total=1226 Number of alignments=136 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bijA -1 :MSRVLQAEELHEKALDPFLLQAEFFEIPMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLT T0305 71 :LPGKDSKHSD 2bijA 319 :SPDPDDPLSS T0305 83 :NANYVDGY 2bijA 331 :NANYIRGY T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 340 :GEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPTEN 2bijA 384 :CTEYWPEEQ T0305 146 :EEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 393 :VAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=1236 Number of alignments=137 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bijA -1 :MSRVLQAEELHEKALDPFLLQAEFFEIPMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLT T0305 71 :LPGKDSKHSD 2bijA 319 :SPDPDDPLSS T0305 83 :NANYVDGY 2bijA 331 :NANYIRGY T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 340 :GEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPTE 2bijA 384 :CTEYWPEE T0305 145 :SEEYGNIIVTLKSTKIHACYTVRRFSIR 2bijA 392 :QVAYDGVEITVQKVIHTEDYRLRLISLK T0305 186 :GR 2bijA 420 :SG T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=1246 Number of alignments=138 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 14 :ELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bijA 263 :AEELHEKALDPFLLQAEFFEIPMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLT T0305 71 :LPGKDSKHSD 2bijA 319 :SPDPDDPLSS T0305 83 :NANYVDGY 2bijA 331 :NANYIRGY T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 340 :GEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPT 2bijA 384 :CTEYWPE T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 391 :EQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=1256 Number of alignments=139 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (2bijA)N-7 Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bijA 267 :HEKALDPFLLQAEFFEIPMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLT T0305 75 :DSKHSD 2bijA 319 :SPDPDD T0305 83 :NANYVDGY 2bijA 331 :NANYIRGY T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 340 :GEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPT 2bijA 384 :CTEYWPE T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 391 :EQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAILG 2bijA 516 :QTCEQYQFVHHVMSLYEKQ Number of specific fragments extracted= 10 number of extra gaps= 3 total=1266 Number of alignments=140 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bijA 271 :LDPFLLQAEFFEIPMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLT T0305 71 :LPGKDSKHSD 2bijA 319 :SPDPDDPLSS T0305 83 :NANYVDGY 2bijA 331 :NANYIRGY T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 340 :GEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPTEN 2bijA 384 :CTEYWPEEQ T0305 146 :EEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 393 :VAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEA 2bijA 516 :QTCEQYQFVHHVMSLY Number of specific fragments extracted= 10 number of extra gaps= 3 total=1276 Number of alignments=141 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bijA 266 :LHEKALDPFLLQAEFFEIPMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLT T0305 71 :LPGKDSKHSD 2bijA 319 :SPDPDDPLSS T0305 83 :NANYVDGY 2bijA 331 :NANYIRGY T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 340 :GEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPTE 2bijA 384 :CTEYWPEE T0305 145 :SEEYGNIIVTLKSTKIHACYTVRRFSIR 2bijA 392 :QVAYDGVEITVQKVIHTEDYRLRLISLK T0305 186 :GR 2bijA 420 :SG T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEA 2bijA 516 :QTCEQYQFVHHVMSLY Number of specific fragments extracted= 10 number of extra gaps= 3 total=1286 Number of alignments=142 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 16 :YSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bijA 265 :ELHEKALDPFLLQAEFFEIPMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLT T0305 71 :LPGKDSKHSD 2bijA 319 :SPDPDDPLSS T0305 83 :NANYVDGY 2bijA 331 :NANYIRGY T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 340 :GEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPT 2bijA 384 :CTEYWPE T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 391 :EQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAIL 2bijA 516 :QTCEQYQFVHHVMSLYEK Number of specific fragments extracted= 10 number of extra gaps= 3 total=1296 Number of alignments=143 # 2bijA read from 2bijA/merged-a2m # found chain 2bijA in template set Warning: unaligning (T0305)Y81 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I330 Warning: unaligning (T0305)I82 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I330 Warning: unaligning (T0305)E130 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bijA)K383 Warning: unaligning (T0305)K135 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bijA)K383 Warning: unaligning (T0305)Q188 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)E423 Warning: unaligning (T0305)N189 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)E423 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (2bijA)I515 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (2bijA)I515 T0305 19 :NQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2bijA 268 :EKALDPFLLQAEFFEIPMNFVDPKEYDIPGLVRKNRYKTILPNPHSRVCLT T0305 75 :DSKHSD 2bijA 319 :SPDPDD T0305 83 :NANYVDGY 2bijA 331 :NANYIRGY T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 2bijA 340 :GEEKVYIATQGPIVSTVADFWRMVWQEHTPIIVMITNIE T0305 136 :CDQYWPT 2bijA 384 :CTEYWPE T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2bijA 391 :EQVAYDGVEITVQKVIHTEDYRLRLISLKS T0305 187 :R 2bijA 421 :G T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2bijA 424 :ERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY 2bijA 463 :PHCAPIIVHCSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG T0305 279 :QTEEQYIFIHDALLEAIL 2bijA 516 :QTCEQYQFVHHVMSLYEK Number of specific fragments extracted= 10 number of extra gaps= 3 total=1306 Number of alignments=144 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f6fA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2f6fA expands to /projects/compbio/data/pdb/2f6f.pdb.gz 2f6fA:Skipped atom 775, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 777, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 779, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 781, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 783, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 785, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 787, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 789, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1002, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1004, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1006, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1008, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1010, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1012, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1014, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1016, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1018, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1438, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1440, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1442, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1444, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1446, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1448, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1450, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1452, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1454, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1641, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1643, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1645, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1647, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1649, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1651, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1898, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1900, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1902, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1904, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1906, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1908, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1910, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 1923, because occupancy 0.400 <= existing 0.600 in 2f6fA Skipped atom 1925, because occupancy 0.400 <= existing 0.600 in 2f6fA Skipped atom 1927, because occupancy 0.400 <= existing 0.600 in 2f6fA Skipped atom 1929, because occupancy 0.400 <= existing 0.600 in 2f6fA Skipped atom 1931, because occupancy 0.400 <= existing 0.600 in 2f6fA Skipped atom 1933, because occupancy 0.400 <= existing 0.600 in 2f6fA Skipped atom 2302, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 2304, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 2306, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 2308, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 2310, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 2312, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 2314, because occupancy 0.500 <= existing 0.500 in 2f6fA Skipped atom 2316, because occupancy 0.500 <= existing 0.500 in 2f6fA # T0305 read from 2f6fA/merged-a2m # 2f6fA read from 2f6fA/merged-a2m # adding 2f6fA to template set # found chain 2f6fA in template set T0305 47 :PENKHKNRYINILAYDHSRVKLR 2f6fA 38 :PKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 2f6fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTKV 2f6fA 138 :TNLKLTLISEDIKSYYTVRQLELENLTT T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFV 2f6fA 166 :QETREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 2f6fA 198 :VRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCL T0305 253 :QQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 2f6fA 236 :DKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=1312 Number of alignments=145 # 2f6fA read from 2f6fA/merged-a2m # found chain 2f6fA in template set T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 2f6fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 2f6fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTK 2f6fA 138 :TNLKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFV 2f6fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 2f6fA 198 :VRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCL T0305 253 :QQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 2f6fA 236 :DKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=1318 Number of alignments=146 # 2f6fA read from 2f6fA/merged-a2m # found chain 2f6fA in template set Warning: unaligning (T0305)F2 because first residue in template chain is (2f6fA)A-3 T0305 3 :QSMKQFVKHIGELYSNNQ 2f6fA -2 :LEFMEMEKEFEQIDKSGS T0305 23 :FSEDFEEVQRCTADM 2f6fA 16 :WAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 2f6fA 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2f6fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 2f6fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 2f6fA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 2f6fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 2f6fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2f6fA 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=1327 Number of alignments=147 # 2f6fA read from 2f6fA/merged-a2m # found chain 2f6fA in template set Warning: unaligning (T0305)F2 because first residue in template chain is (2f6fA)A-3 T0305 3 :QSMKQFVKHIGELYSNNQ 2f6fA -2 :LEFMEMEKEFEQIDKSGS T0305 23 :FSEDFEEVQRCTADM 2f6fA 16 :WAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 2f6fA 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2f6fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 2f6fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 2f6fA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 2f6fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 2f6fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2f6fA 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=1336 Number of alignments=148 # 2f6fA read from 2f6fA/merged-a2m # found chain 2f6fA in template set T0305 13 :GELYSNNQHGFSEDFEEVQRCTADM 2f6fA 6 :EFEQIDKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 2f6fA 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2f6fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 2f6fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 2f6fA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 2f6fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 2f6fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2f6fA 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 8 number of extra gaps= 0 total=1344 Number of alignments=149 # 2f6fA read from 2f6fA/merged-a2m # found chain 2f6fA in template set T0305 17 :SNNQHGFSEDFEEVQRCTADM 2f6fA 10 :IDKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 2f6fA 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2f6fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 2f6fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 2f6fA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 2f6fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 2f6fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 2f6fA 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGA Number of specific fragments extracted= 8 number of extra gaps= 0 total=1352 Number of alignments=150 # 2f6fA read from 2f6fA/merged-a2m # found chain 2f6fA in template set Warning: unaligning (T0305)M5 because first residue in template chain is (2f6fA)A-3 T0305 6 :KQFVKHIGELYSNNQHG 2f6fA -2 :LEFMEMEKEFEQIDKSG T0305 23 :FSEDFEEVQ 2f6fA 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 2f6fA 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2f6fA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 2f6fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 2f6fA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2f6fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 2f6fA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2f6fA 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=1361 Number of alignments=151 # 2f6fA read from 2f6fA/merged-a2m # found chain 2f6fA in template set Warning: unaligning (T0305)F2 because first residue in template chain is (2f6fA)A-3 T0305 3 :QSMKQFVKHIGELYSNNQ 2f6fA -2 :LEFMEMEKEFEQIDKSGS T0305 23 :FSEDFEEVQ 2f6fA 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 2f6fA 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2f6fA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 2f6fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 2f6fA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2f6fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 2f6fA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2f6fA 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=1370 Number of alignments=152 # 2f6fA read from 2f6fA/merged-a2m # found chain 2f6fA in template set T0305 6 :KQFVKHIGELYSNNQHG 2f6fA -2 :LEFMEMEKEFEQIDKSG T0305 23 :FSEDFEEVQ 2f6fA 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 2f6fA 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2f6fA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 2f6fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 2f6fA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2f6fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 2f6fA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 2f6fA 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE Number of specific fragments extracted= 9 number of extra gaps= 0 total=1379 Number of alignments=153 # 2f6fA read from 2f6fA/merged-a2m # found chain 2f6fA in template set T0305 7 :QFVKHIGELYSNN 2f6fA 2 :EMEKEFEQIDKSG T0305 22 :GFSEDFEEVQ 2f6fA 15 :SWAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 2f6fA 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2f6fA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 2f6fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 2f6fA 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2f6fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 2f6fA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 2f6fA 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG Number of specific fragments extracted= 9 number of extra gaps= 0 total=1388 Number of alignments=154 # 2f6fA read from 2f6fA/merged-a2m # found chain 2f6fA in template set Warning: unaligning (T0305)K6 because first residue in template chain is (2f6fA)A-3 T0305 7 :QFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2f6fA -2 :LEFMEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2f6fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2f6fA 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2f6fA 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 2f6fA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2f6fA 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 6 number of extra gaps= 0 total=1394 Number of alignments=155 # 2f6fA read from 2f6fA/merged-a2m # found chain 2f6fA in template set Warning: unaligning (T0305)K6 because first residue in template chain is (2f6fA)A-3 T0305 7 :QFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2f6fA -2 :LEFMEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2f6fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2f6fA 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2f6fA 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 2f6fA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2f6fA 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 6 number of extra gaps= 0 total=1400 Number of alignments=156 # 2f6fA read from 2f6fA/merged-a2m # found chain 2f6fA in template set T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2f6fA 13 :SGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2f6fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2f6fA 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2f6fA 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 2f6fA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 2f6fA 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=1406 Number of alignments=157 # 2f6fA read from 2f6fA/merged-a2m # found chain 2f6fA in template set T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2f6fA 8 :EQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2f6fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2f6fA 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2f6fA 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 2f6fA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 2f6fA 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=1412 Number of alignments=158 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1aax/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1aax expands to /projects/compbio/data/pdb/1aax.pdb.gz 1aax:# T0305 read from 1aax/merged-a2m # 1aax read from 1aax/merged-a2m # adding 1aax to template set # found chain 1aax in template set Warning: unaligning (T0305)V9 because first residue in template chain is (1aax)E2 T0305 10 :KHIGELYSNNQHGFSEDFEEVQRCTADMNIT 1aax 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCR T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLR 1aax 34 :VAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEYGN 1aax 131 :KEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNT 1aax 140 :LKLTLISEDIKSYYTVRQLELENL T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 164 :TTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLM T0305 256 :KDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1aax 239 :KDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 8 number of extra gaps= 0 total=1420 Number of alignments=159 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)F2 because first residue in template chain is (1aax)E2 T0305 10 :KHIGELYSNNQHGFSEDFEEVQRCTADMNIT 1aax 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCR T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLR 1aax 34 :VAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEYGN 1aax 131 :KEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNT 1aax 140 :LKLTLISEDIKSYYTVRQLELENL T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 164 :TTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLM T0305 256 :KDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1aax 239 :KDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 8 number of extra gaps= 0 total=1428 Number of alignments=160 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set T0305 11 :HIGELYSNNQHGFSEDFEEVQRCTADMNIT 1aax 4 :EKEFEQIDKSGSWAAIYQDIRHEASDFPCR T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLR 1aax 34 :VAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEYGN 1aax 131 :KEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNT 1aax 140 :LKLTLISEDIKSYYTVRQLELENL T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 164 :TTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLM T0305 256 :KDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1aax 239 :KDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 8 number of extra gaps= 0 total=1436 Number of alignments=161 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNIT 1aax 5 :KEFEQIDKSGSWAAIYQDIRHEASDFPCR T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLR 1aax 34 :VAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEYGN 1aax 131 :KEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNT 1aax 140 :LKLTLISEDIKSYYTVRQLELENL T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 164 :TTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLM T0305 256 :KDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1aax 239 :KDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 8 number of extra gaps= 0 total=1444 Number of alignments=162 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1aax)E2 T0305 8 :FVKHIGELYSN 1aax 3 :MEKEFEQIDKS T0305 21 :HGFSEDFEEVQRCTAD 1aax 14 :GSWAAIYQDIRHEASD T0305 39 :ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1aax 30 :FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1aax 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEY 1aax 131 :KEMIF T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNT 1aax 138 :TNLKLTLISEDIKSYYTVRQLELENL T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1aax 164 :TTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1aax 203 :SLSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1aax 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 9 number of extra gaps= 0 total=1453 Number of alignments=163 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set T0305 10 :KHIGELYSN 1aax 5 :KEFEQIDKS T0305 21 :HGFSEDFEEVQRCTAD 1aax 14 :GSWAAIYQDIRHEASD T0305 39 :ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1aax 30 :FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1aax 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEY 1aax 131 :KEMIF T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNT 1aax 138 :TNLKLTLISEDIKSYYTVRQLELENL T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1aax 164 :TTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1aax 203 :SLSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1aax 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGA Number of specific fragments extracted= 9 number of extra gaps= 0 total=1462 Number of alignments=164 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set T0305 47 :PENKHKNRYINILAYDHSRVKLR 1aax 38 :PKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTKV 1aax 138 :TNLKLTLISEDIKSYYTVRQLELENLTT T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFV 1aax 166 :QETREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1aax 198 :VRESGSLSPEHGPVVVHSSAGIGRSGTFCLADTCL T0305 253 :QQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1aax 236 :DKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=1468 Number of alignments=165 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1aax 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTK 1aax 138 :TNLKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFV 1aax 165 :TQETREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1aax 198 :VRESGSLSPEHGPVVVHSSAGIGRSGTFCLADTCL T0305 253 :QQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1aax 236 :DKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=1474 Number of alignments=166 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)V9 because first residue in template chain is (1aax)E2 T0305 10 :KHIGELYSNNQHGFSEDFEEVQRCTADM 1aax 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1aax 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 8 number of extra gaps= 0 total=1482 Number of alignments=167 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1aax)E2 T0305 8 :FVKHIGEL 1aax 3 :MEKEFEQI T0305 18 :NNQHGFSEDFEEVQRCTADM 1aax 11 :DKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1aax 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=1491 Number of alignments=168 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1aax)E2 T0305 8 :FVKHIGELYSNNQ 1aax 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQRCTADM 1aax 16 :WAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1aax 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE T0305 294 :AILG 1aax 280 :FIMG Number of specific fragments extracted= 10 number of extra gaps= 0 total=1501 Number of alignments=169 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1aax)E2 T0305 5 :MKQFVKHIGE 1aax 3 :MEKEFEQIDK T0305 18 :N 1aax 13 :S T0305 21 :HGFSEDFEEVQRCTADM 1aax 14 :GSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRN 1aax 140 :LKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE T0305 294 :AILG 1aax 280 :FIMG Number of specific fragments extracted= 11 number of extra gaps= 0 total=1512 Number of alignments=170 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set T0305 13 :GELYSNNQHGFSEDFEEVQRCTADM 1aax 6 :EFEQIDKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1aax 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 8 number of extra gaps= 0 total=1520 Number of alignments=171 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set T0305 18 :NNQHGFSEDFEEVQRCTADM 1aax 11 :DKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1aax 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGA Number of specific fragments extracted= 8 number of extra gaps= 0 total=1528 Number of alignments=172 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1aax)E2 T0305 8 :FVKHIGELYSNNQ 1aax 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQRCTADM 1aax 16 :WAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1aax 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 9 number of extra gaps= 0 total=1537 Number of alignments=173 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1aax)E2 T0305 5 :MKQFVKHIG 1aax 3 :MEKEFEQID T0305 17 :SN 1aax 12 :KS T0305 21 :HGFSEDFEEVQRCTADM 1aax 14 :GSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRN 1aax 140 :LKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 10 number of extra gaps= 0 total=1547 Number of alignments=174 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1aax)E2 T0305 8 :FVKHIGELYSNNQ 1aax 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1aax 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1aax 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1aax 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1aax 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=1556 Number of alignments=175 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1aax)E2 T0305 8 :FVKHIGELYSNNQ 1aax 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1aax 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1aax 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1aax 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1aax 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=1565 Number of alignments=176 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1aax)E2 T0305 8 :FVKHIGELYSNNQ 1aax 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1aax 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRP 1aax 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ T0305 77 :KHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 62 :EDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1aax 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE T0305 294 :AILG 1aax 280 :FIMG Number of specific fragments extracted= 10 number of extra gaps= 0 total=1575 Number of alignments=177 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1aax)E2 T0305 5 :MKQFVKHIGELY 1aax 3 :MEKEFEQIDKSG T0305 22 :GFSEDFEEVQRCTA 1aax 15 :SWAAIYQDIRHEAS T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 29 :DFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1aax 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE T0305 294 :AILG 1aax 280 :FIMG Number of specific fragments extracted= 10 number of extra gaps= 0 total=1585 Number of alignments=178 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set T0305 13 :GELYSNNQHGFSEDFEEVQ 1aax 6 :EFEQIDKSGSWAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1aax 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1aax 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1aax 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE Number of specific fragments extracted= 8 number of extra gaps= 0 total=1593 Number of alignments=179 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set T0305 15 :LY 1aax 10 :ID T0305 19 :NQHGFSEDFEEVQ 1aax 12 :KSGSWAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1aax 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1aax 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1aax 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG Number of specific fragments extracted= 9 number of extra gaps= 0 total=1602 Number of alignments=180 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1aax)E2 T0305 8 :FVKHIGELYSNNQ 1aax 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1aax 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRP 1aax 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ T0305 77 :KHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 62 :EDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1aax 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 9 number of extra gaps= 0 total=1611 Number of alignments=181 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1aax)E2 T0305 5 :MKQFVKHIGELY 1aax 3 :MEKEFEQIDKSG T0305 22 :GFSEDFEEVQRCTA 1aax 15 :SWAAIYQDIRHEAS T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 29 :DFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1aax 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1aax 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1aax 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 9 number of extra gaps= 0 total=1620 Number of alignments=182 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)H11 because first residue in template chain is (1aax)E2 T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1aax 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1aax 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1aax 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1aax 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 6 number of extra gaps= 0 total=1626 Number of alignments=183 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)H11 because first residue in template chain is (1aax)E2 T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1aax 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1aax 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1aax 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1aax 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 6 number of extra gaps= 0 total=1632 Number of alignments=184 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)H11 because first residue in template chain is (1aax)E2 T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYG 1aax 130 :EKEMIFE T0305 150 :NIIVTLKSTKIHACYTVRRFSIRN 1aax 139 :NLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1aax 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 7 number of extra gaps= 0 total=1639 Number of alignments=185 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set Warning: unaligning (T0305)H11 because first residue in template chain is (1aax)E2 T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYG 1aax 130 :EKEMIFE T0305 150 :NIIVTLKSTKIHACYTVRRFSIRN 1aax 139 :NLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1aax 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 7 number of extra gaps= 0 total=1646 Number of alignments=186 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 13 :SGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1aax 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1aax 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1aax 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1aax 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=1652 Number of alignments=187 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 8 :EQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1aax 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1aax 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1aax 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1aax 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=1658 Number of alignments=188 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYG 1aax 130 :EKEMIFE T0305 150 :NIIVTLKSTKIHACYTVRRFSIRN 1aax 139 :NLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1aax 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGA Number of specific fragments extracted= 7 number of extra gaps= 0 total=1665 Number of alignments=189 # 1aax read from 1aax/merged-a2m # found chain 1aax in template set T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1aax 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1aax 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYG 1aax 130 :EKEMIFE T0305 150 :NIIVTLKSTKIHACYTVRRFSIRN 1aax 139 :NLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1aax 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1aax 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1aax 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 7 number of extra gaps= 0 total=1672 Number of alignments=190 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wchA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 1wchA/merged-a2m # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set Warning: unaligning (T0305)H21 because first residue in template chain is (1wchA)H2170 T0305 22 :GFSEDFE 1wchA 2171 :SFLTNDE T0305 29 :EVQRCTADMNITAEH 1wchA 2202 :RVLRGLLDQGIPSKE T0305 44 :SNHPENKHKNRYINILAYDHSRVKLRPLPG 1wchA 2232 :GQTKENRRKNRYKNILPYDATRVPLGDEGG T0305 81 :YINANYVD 1wchA 2262 :YINASFIK T0305 89 :GYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1wchA 2272 :VGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWP T0305 150 :NIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFV 1wchA 2325 :NILGKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQTREVRHISHLNFTAWPDHDTPSQPDDLLTFI T0305 220 :SSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2393 :SYMRHIHRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 7 number of extra gaps= 0 total=1679 Number of alignments=191 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 9 :VKHIGELYSNNQHGFS 1wchA 2181 :LPVVKVLPSGKYTGAN T0305 25 :EDFEEVQRCTADMNITAE 1wchA 2198 :KSVIRVLRGLLDQGIPSK T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLRPLPG 1wchA 2231 :IGQTKENRRKNRYKNILPYDATRVPLGDEGG T0305 81 :YINANYVDG 1wchA 2262 :YINASFIKI T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSE 1wchA 2273 :GKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNILGK T0305 153 :VTLKSTKIH 1wchA 2330 :TTMVSNRLR T0305 162 :ACYTVRRFSIRNTKVKKGQ 1wchA 2343 :RMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFV 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFI T0305 220 :SSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2393 :SYMRHIHRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 9 number of extra gaps= 0 total=1688 Number of alignments=192 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 48 :ENKHKNRYINILAYDHSRVKLRPLPG 1wchA 2236 :ENRRKNRYKNILPYDATRVPLGDEGG T0305 81 :YINANYVD 1wchA 2262 :YINASFIK T0305 89 :GYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1wchA 2272 :VGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWP T0305 150 :NIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFV 1wchA 2325 :NILGKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQTREVRHISHLNFTAWPDHDTPSQPDDLLTFI T0305 220 :SSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALL 1wchA 2393 :SYMRHIHRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVIL Number of specific fragments extracted= 5 number of extra gaps= 0 total=1693 Number of alignments=193 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 45 :NHPENKHKNRYINILAYDHSRVKLRPLPG 1wchA 2233 :QTKENRRKNRYKNILPYDATRVPLGDEGG T0305 81 :YINANYVDG 1wchA 2262 :YINASFIKI T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSE 1wchA 2273 :GKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNILGK T0305 153 :VTLKSTKIH 1wchA 2330 :TTMVSNRLR T0305 162 :ACYTVRRFSIRNTKVKKGQ 1wchA 2343 :RMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFV 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFI T0305 220 :SSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1wchA 2393 :SYMRHIHRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILY Number of specific fragments extracted= 7 number of extra gaps= 0 total=1700 Number of alignments=194 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 1 :YFQSMKQFVKHIGE 1wchA 2193 :TGANLKSVIRVLRG T0305 17 :SNNQHGFSEDFEEVQRCTADMN 1wchA 2207 :LLDQGIPSKELENLQELKPLDQ T0305 41 :AEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2229 :CLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGYNKAKA 1wchA 2257 :GDEGGYINASFIKIPVGKEE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2279 :YIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMP 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIHRS T0305 229 :GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2402 :GPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 8 number of extra gaps= 0 total=1708 Number of alignments=195 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 2 :FQSMKQFVKHIGE 1wchA 2194 :GANLKSVIRVLRG T0305 17 :SNNQHGFSEDFEEVQRCTADMN 1wchA 2207 :LLDQGIPSKELENLQELKPLDQ T0305 41 :AEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2229 :CLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGYNKAKA 1wchA 2257 :GDEGGYINASFIKIPVGKEE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2279 :YIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRH T0305 225 :MPE 1wchA 2398 :IHR T0305 229 :GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2402 :GPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 9 number of extra gaps= 0 total=1717 Number of alignments=196 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 18 :NNQHGFSEDFEEVQRCTADMN 1wchA 2208 :LDQGIPSKELENLQELKPLDQ T0305 41 :AEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2229 :CLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGYNKAKA 1wchA 2257 :GDEGGYINASFIKIPVGKEE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2279 :YIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMP 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIHRS T0305 229 :GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2402 :GPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 7 number of extra gaps= 0 total=1724 Number of alignments=197 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 6 :KQFVKHIGE 1wchA 2198 :KSVIRVLRG T0305 17 :SNNQHGFSEDFEEVQRCTADMN 1wchA 2207 :LLDQGIPSKELENLQELKPLDQ T0305 41 :AEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2229 :CLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGYNKAKA 1wchA 2257 :GDEGGYINASFIKIPVGKEE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2279 :YIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRH T0305 225 :MPE 1wchA 2398 :IHR T0305 229 :GPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1wchA 2402 :GPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLT Number of specific fragments extracted= 9 number of extra gaps= 0 total=1733 Number of alignments=198 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 1 :YFQSMKQFVKHIGEL 1wchA 2193 :TGANLKSVIRVLRGL T0305 18 :NNQHGFSEDFEEVQRCTA 1wchA 2208 :LDQGIPSKELENLQELKP T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2226 :LDQCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGYNKAKA 1wchA 2257 :GDEGGYINASFIKIPVGKEE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSE 1wchA 2279 :YIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNILGK T0305 147 :EYGNIIVTLKSTKIHACYTVRRFSIRNT 1wchA 2333 :VSNRLRLALVRMQQLKGFVVRAMTLEDI T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2361 :QTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 8 number of extra gaps= 0 total=1741 Number of alignments=199 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 1 :YFQSMKQFVKHIGEL 1wchA 2193 :TGANLKSVIRVLRGL T0305 18 :NNQHGFSEDFEEVQRCTA 1wchA 2208 :LDQGIPSKELENLQELKP T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2226 :LDQCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGYNKAKA 1wchA 2257 :GDEGGYINASFIKIPVGKEE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSE 1wchA 2279 :YIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNILGK T0305 147 :EYGNIIVTLKSTKIHACYTVRRFSIRNT 1wchA 2333 :VSNRLRLALVRMQQLKGFVVRAMTLEDI T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2361 :QTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 8 number of extra gaps= 0 total=1749 Number of alignments=200 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 2 :FQSMKQFVKHIGEL 1wchA 2194 :GANLKSVIRVLRGL T0305 18 :NNQHGFSEDFEEVQRCTA 1wchA 2208 :LDQGIPSKELENLQELKP T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2226 :LDQCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGYNKAKA 1wchA 2257 :GDEGGYINASFIKIPVGKEE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSE 1wchA 2279 :YIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNILGK T0305 147 :EYGNIIVTLKSTKIHACYTVRRFSIRNT 1wchA 2333 :VSNRLRLALVRMQQLKGFVVRAMTLEDI T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2361 :QTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVL Number of specific fragments extracted= 8 number of extra gaps= 0 total=1757 Number of alignments=201 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 5 :MKQFVKHIGEL 1wchA 2197 :LKSVIRVLRGL T0305 18 :NNQHGFSEDFEEVQRCTA 1wchA 2208 :LDQGIPSKELENLQELKP T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2226 :LDQCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGYNKAKA 1wchA 2257 :GDEGGYINASFIKIPVGKEE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSE 1wchA 2279 :YIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNILGK T0305 147 :EYGNIIVTLKSTKIHACYTVRRFSIRNT 1wchA 2333 :VSNRLRLALVRMQQLKGFVVRAMTLEDI T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2361 :QTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLT Number of specific fragments extracted= 8 number of extra gaps= 0 total=1765 Number of alignments=202 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 48 :ENKHKNRYINILAYDHSRVKLRPLPG 1wchA 2236 :ENRRKNRYKNILPYDATRVPLGDEGG T0305 81 :YINANY 1wchA 2262 :YINASF T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1wchA 2270 :IPVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWP T0305 150 :NIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFV 1wchA 2325 :NILGKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQTREVRHISHLNFTAWPDHDTPSQPDDLLTFI T0305 220 :SSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALL 1wchA 2393 :SYMRHIHRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVIL Number of specific fragments extracted= 5 number of extra gaps= 0 total=1770 Number of alignments=203 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 45 :NHPENKHKNRYINILAYDHSRVKLRP 1wchA 2233 :QTKENRRKNRYKNILPYDATRVPLGD T0305 78 :HSDYINANYVD 1wchA 2259 :EGGYINASFIK T0305 89 :GYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEE 1wchA 2272 :VGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNILGKT T0305 148 :YGNIIVTLKSTKIHACYTVRRFSIRNTKV 1wchA 2334 :SNRLRLALVRMQQLKGFVVRAMTLEDIQT T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVR 1wchA 2363 :REVRHISHLNFTAWPDHDTPSQPDDLLTFIS T0305 221 :SAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1wchA 2394 :YMRHIHRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILY Number of specific fragments extracted= 6 number of extra gaps= 0 total=1776 Number of alignments=204 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 1 :YFQSMKQFVKHIGELYSN 1wchA 2179 :AVLPVVKVLPSGKYTGAN T0305 19 :NQHGFSEDFEEVQRCTADM 1wchA 2209 :DQGIPSKELENLQELKPLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGY 1wchA 2257 :GDEGGYINASFIKIP T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1wchA 2274 :KEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2328 :GKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHI T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2399 :HRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 8 number of extra gaps= 0 total=1784 Number of alignments=205 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 2 :FQSMKQFVKHIGELYSN 1wchA 2180 :VLPVVKVLPSGKYTGAN T0305 19 :NQHGFSEDFEEVQRCTADM 1wchA 2209 :DQGIPSKELENLQELKPLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGY 1wchA 2257 :GDEGGYINASFIKIP T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1wchA 2274 :KEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2328 :GKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHI T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2399 :HRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 8 number of extra gaps= 0 total=1792 Number of alignments=206 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 5 :MKQFVKHIGELYSN 1wchA 2193 :TGANLKSVIRVLRG T0305 19 :NQHGFSEDFEEVQRCTAD 1wchA 2209 :DQGIPSKELENLQELKPL T0305 38 :N 1wchA 2227 :D T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYV 1wchA 2257 :GDEGGYINASFI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1wchA 2271 :PVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1wchA 2328 :GKTTMVSNRLRLALVRMQQLKGFVVRAMTLED T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2360 :IQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 9 number of extra gaps= 0 total=1801 Number of alignments=207 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 5 :MKQFVKHIGELYSNN 1wchA 2197 :LKSVIRVLRGLLDQG T0305 22 :GFSEDFEEVQRCTA 1wchA 2212 :IPSKELENLQELKP T0305 37 :MN 1wchA 2226 :LD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYV 1wchA 2257 :GDEGGYINASFI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1wchA 2271 :PVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWP T0305 142 :TENSEE 1wchA 2327 :LGKTTM T0305 148 :YGNIIVTLKSTKIHACYTVRRFSIRN 1wchA 2334 :SNRLRLALVRMQQLKGFVVRAMTLED T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2360 :IQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 10 number of extra gaps= 0 total=1811 Number of alignments=208 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 41 :AEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2229 :CLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGY 1wchA 2257 :GDEGGYINASFIKIP T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1wchA 2274 :KEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2328 :GKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHI T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2399 :HRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 6 number of extra gaps= 0 total=1817 Number of alignments=209 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 20 :QHGFSEDFEEVQRCTADM 1wchA 2210 :QGIPSKELENLQELKPLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGY 1wchA 2257 :GDEGGYINASFIKIP T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1wchA 2274 :KEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2328 :GKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHI T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1wchA 2399 :HRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLT Number of specific fragments extracted= 7 number of extra gaps= 0 total=1824 Number of alignments=210 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 3 :QSMKQFVKHIGELYSN 1wchA 2195 :ANLKSVIRVLRGLLDQ T0305 21 :HGFSEDFEEVQRCTAD 1wchA 2211 :GIPSKELENLQELKPL T0305 38 :N 1wchA 2227 :D T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYV 1wchA 2257 :GDEGGYINASFI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1wchA 2271 :PVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1wchA 2328 :GKTTMVSNRLRLALVRMQQLKGFVVRAMTLED T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2360 :IQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 9 number of extra gaps= 0 total=1833 Number of alignments=211 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 3 :QSMKQFVKHIGELYSNN 1wchA 2195 :ANLKSVIRVLRGLLDQG T0305 22 :GFSEDFEEVQRCTA 1wchA 2212 :IPSKELENLQELKP T0305 37 :MN 1wchA 2226 :LD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYV 1wchA 2257 :GDEGGYINASFI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1wchA 2271 :PVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWP T0305 142 :TENSEE 1wchA 2327 :LGKTTM T0305 148 :YGNIIVTLKSTKIHACYTVRRFSIRN 1wchA 2334 :SNRLRLALVRMQQLKGFVVRAMTLED T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2360 :IQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 10 number of extra gaps= 0 total=1843 Number of alignments=212 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 1 :YFQSMKQFVKHIGELYSN 1wchA 2179 :AVLPVVKVLPSGKYTGAN T0305 19 :NQHGFSE 1wchA 2199 :SVIRVLR T0305 26 :DFEEVQRCTADM 1wchA 2216 :ELENLQELKPLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGYNKAKA 1wchA 2257 :GDEGGYINASFIKIPVGKEE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2279 :YIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 9 number of extra gaps= 0 total=1852 Number of alignments=213 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 2 :FQSMKQFVKHIGELY 1wchA 2180 :VLPVVKVLPSGKYTG T0305 17 :SNNQHGFSEDFEEVQRCTADM 1wchA 2207 :LLDQGIPSKELENLQELKPLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGYNKAKA 1wchA 2257 :GDEGGYINASFIKIPVGKEE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2279 :YIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 8 number of extra gaps= 0 total=1860 Number of alignments=214 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 1 :YFQ 1wchA 2170 :HSF T0305 5 :MKQFVKHIGELY 1wchA 2197 :LKSVIRVLRGLL T0305 19 :NQHGFSEDFEEVQRCTADM 1wchA 2209 :DQGIPSKELENLQELKPLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYV 1wchA 2257 :GDEGGYINASFI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2271 :PVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 9 number of extra gaps= 0 total=1869 Number of alignments=215 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set Warning: unaligning (T0305)Q3 because first residue in template chain is (1wchA)H2170 T0305 4 :S 1wchA 2171 :S T0305 5 :MKQFVKHIGELYSNNQ 1wchA 2197 :LKSVIRVLRGLLDQGI T0305 23 :FSEDFEEVQRCTADM 1wchA 2213 :PSKELENLQELKPLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYV 1wchA 2257 :GDEGGYINASFI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2271 :PVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEY 1wchA 2328 :GKTTMV T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2335 :NRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 10 number of extra gaps= 0 total=1879 Number of alignments=216 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 13 :GELYSNNQHGFSEDFEEVQRCTADM 1wchA 2203 :VLRGLLDQGIPSKELENLQELKPLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGYNKAKA 1wchA 2257 :GDEGGYINASFIKIPVGKEE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2279 :YIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 7 number of extra gaps= 0 total=1886 Number of alignments=217 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 18 :NNQHGFSEDFEEVQRCTADM 1wchA 2208 :LDQGIPSKELENLQELKPLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYVDGYNKAKA 1wchA 2257 :GDEGGYINASFIKIPVGKEE T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2279 :YIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLT Number of specific fragments extracted= 7 number of extra gaps= 0 total=1893 Number of alignments=218 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 4 :SMKQFVKHIGELYSNN 1wchA 2196 :NLKSVIRVLRGLLDQG T0305 22 :GFSEDFEEVQRCTADM 1wchA 2212 :IPSKELENLQELKPLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYV 1wchA 2257 :GDEGGYINASFI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2271 :PVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 8 number of extra gaps= 0 total=1901 Number of alignments=219 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 4 :SMKQFVKHIGELYSNNQ 1wchA 2196 :NLKSVIRVLRGLLDQGI T0305 23 :FSEDFEEVQRCTADM 1wchA 2213 :PSKELENLQELKPLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKL 1wchA 2228 :QCLIGQTKENRRKNRYKNILPYDATRVPL T0305 76 :SKHSDYINANYV 1wchA 2257 :GDEGGYINASFI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2271 :PVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEY 1wchA 2328 :GKTTMV T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTK 1wchA 2335 :NRLRLALVRMQQLKGFVVRAMTLEDIQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2362 :TREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 9 number of extra gaps= 0 total=1910 Number of alignments=220 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set Warning: unaligning (T0305)F8 because first residue in template chain is (1wchA)H2170 T0305 9 :VKH 1wchA 2171 :SFL T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1wchA 2200 :VIRVLRGLLDQGIPSKELENLQELKPLDQCLIGQTKENRRKNRYKNILPYDATRVPLG T0305 77 :KHSDYINANYVDGY 1wchA 2258 :DEGGYINASFIKIP T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2274 :KEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLED T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1wchA 2360 :IQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRH T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2398 :IHRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 7 number of extra gaps= 0 total=1917 Number of alignments=221 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set Warning: unaligning (T0305)F8 because first residue in template chain is (1wchA)H2170 T0305 9 :VKH 1wchA 2171 :SFL T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1wchA 2200 :VIRVLRGLLDQGIPSKELENLQELKPLDQCLIGQTKENRRKNRYKNILPYDATRVPLG T0305 77 :KHSDYINANYVDGY 1wchA 2258 :DEGGYINASFIKIP T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2274 :KEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLED T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1wchA 2360 :IQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRH T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2398 :IHRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 7 number of extra gaps= 0 total=1924 Number of alignments=222 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 7 :QFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1wchA 2195 :ANLKSVIRVLRGLLDQGIPSKELENLQELKPLDQCLIGQTKENRRKNRYKNILPYDATRVPLG T0305 77 :KHSDYINANYVDGY 1wchA 2258 :DEGGYINASFIKIP T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2274 :KEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLED T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1wchA 2360 :IQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHI T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2399 :HRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 6 number of extra gaps= 0 total=1930 Number of alignments=223 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 6 :KQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1wchA 2194 :GANLKSVIRVLRGLLDQGIPSKELENLQELKPLDQCLIGQTKENRRKNRYKNILPYDATRVPLG T0305 77 :KHSDYINANYV 1wchA 2258 :DEGGYINASFI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2271 :PVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLED T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2360 :IQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTR Number of specific fragments extracted= 6 number of extra gaps= 0 total=1936 Number of alignments=224 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1wchA 2210 :QGIPSKELENLQELKPLDQCLIGQTKENRRKNRYKNILPYDATRVPLG T0305 77 :KHSDYINANYVDGY 1wchA 2258 :DEGGYINASFIKIP T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2274 :KEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLED T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1wchA 2360 :IQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRH T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1wchA 2398 :IHRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVL Number of specific fragments extracted= 6 number of extra gaps= 0 total=1942 Number of alignments=225 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1wchA 2205 :RGLLDQGIPSKELENLQELKPLDQCLIGQTKENRRKNRYKNILPYDATRVPLG T0305 77 :KHSDYINANYVDGY 1wchA 2258 :DEGGYINASFIKIP T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2274 :KEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLED T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1wchA 2360 :IQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRH T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1wchA 2398 :IHRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVL Number of specific fragments extracted= 6 number of extra gaps= 0 total=1948 Number of alignments=226 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 7 :QFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1wchA 2195 :ANLKSVIRVLRGLLDQGIPSKELENLQELKPLDQCLIGQTKENRRKNRYKNILPYDATRVPLG T0305 77 :KHSDYINANYVDGY 1wchA 2258 :DEGGYINASFIKIP T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2274 :KEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLED T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1wchA 2360 :IQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHI T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1wchA 2399 :HRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVL Number of specific fragments extracted= 6 number of extra gaps= 0 total=1954 Number of alignments=227 # 1wchA read from 1wchA/merged-a2m # found chain 1wchA in template set T0305 7 :QFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1wchA 2195 :ANLKSVIRVLRGLLDQGIPSKELENLQELKPLDQCLIGQTKENRRKNRYKNILPYDATRVPLG T0305 77 :KHSDYINANYV 1wchA 2258 :DEGGYINASFI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1wchA 2271 :PVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPN T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1wchA 2329 :KTTMVSNRLRLALVRMQQLKGFVVRAMTLED T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1wchA 2360 :IQTREVRHISHLNFTAWPDHDTPSQPDDLLTFISYMRHIH T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1wchA 2400 :RSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLT Number of specific fragments extracted= 6 number of extra gaps= 0 total=1960 Number of alignments=228 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rpmA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 1rpmA/merged-a2m # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEEVQR 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYESFFE T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 910 :GQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVK 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEKRGVH T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1049 :EIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1965 Number of alignments=229 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 1 :Y 1rpmA 879 :A T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEEVQR 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYESFFE T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 910 :GQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVK 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEKRGVH T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1049 :EIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 6 number of extra gaps= 0 total=1971 Number of alignments=230 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQR 1rpmA 881 :RVADLLQHITQMKCAEGYGFKEEYESFFE T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 910 :GQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVK 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEKRGVH T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1049 :EIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1976 Number of alignments=231 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQR 1rpmA 882 :VADLLQHITQMKCAEGYGFKEEYESFFE T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 910 :GQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVK 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEKRGVH T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1049 :EIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=1981 Number of alignments=232 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 12 :IGELYSNNQH 1rpmA 885 :LLQHITQMKC T0305 22 :GFSEDFEEVQRC 1rpmA 899 :GFKEEYESFFEG T0305 37 :MNITAEHSNHPENKHKNRYINILAYDHSRVKLRP 1rpmA 911 :QSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQT T0305 79 :SDYINANYVDG 1rpmA 951 :SDYINGNYIDG T0305 93 :AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1rpmA 965 :PNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD T0305 145 :SEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVK 1rpmA 1016 :TEIYKDIKVTLIETELLAEYVIRTFAVEKRGVH T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSS 1rpmA 1049 :EIREIRQFHFTGWPDHGVPYHATGLLGFVRQVK T0305 222 :A 1rpmA 1084 :S T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1rpmA 1085 :PPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAE T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1118 :EGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 10 number of extra gaps= 0 total=1991 Number of alignments=233 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set T0305 11 :HIGELYSNNQH 1rpmA 884 :DLLQHITQMKC T0305 22 :GFSEDFEEVQRC 1rpmA 899 :GFKEEYESFFEG T0305 37 :MNITAEHSNHPENKHKNRYINILAYDHSRVKLRP 1rpmA 911 :QSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQT T0305 79 :SDYINANYVDG 1rpmA 951 :SDYINGNYIDG T0305 93 :AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1rpmA 965 :PNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD T0305 145 :SEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVK 1rpmA 1016 :TEIYKDIKVTLIETELLAEYVIRTFAVEKRGVH T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSS 1rpmA 1049 :EIREIRQFHFTGWPDHGVPYHATGLLGFVRQVK T0305 222 :A 1rpmA 1084 :S T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1rpmA 1085 :PPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAE T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1118 :EGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 10 number of extra gaps= 0 total=2001 Number of alignments=234 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 7 :QFVKHIGELYSNNQHGFSEDFEEVQR 1rpmA 884 :DLLQHITQMKCAEGYGFKEEYESFFE T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 1rpmA 910 :GQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEG T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 948 :DTNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2006 Number of alignments=235 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 7 :QFVKHIGELYSNNQHGFSEDFEEVQRCT 1rpmA 884 :DLLQHITQMKCAEGYGFKEEYESFFEGQ T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGK 1rpmA 912 :SAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGD T0305 77 :KHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1rpmA 949 :TNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1015 :DTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2011 Number of alignments=236 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)F2 because first residue in template chain is (1rpmA)A879 Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTAD 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYESFFEGQSA T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 914 :PWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2016 Number of alignments=237 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)F2 because first residue in template chain is (1rpmA)A879 Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEEVQR 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYESFFE T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 910 :GQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1015 :DTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2021 Number of alignments=238 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)F2 because first residue in template chain is (1rpmA)A879 Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFE 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYE T0305 32 :RCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 906 :SFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2026 Number of alignments=239 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)F2 because first residue in template chain is (1rpmA)A879 T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEE 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYES T0305 33 :CTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 907 :FFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2031 Number of alignments=240 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTAD 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYESFFEGQSA T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 914 :PWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2036 Number of alignments=241 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQR 1rpmA 881 :RVADLLQHITQMKCAEGYGFKEEYESFFE T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 910 :GQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1015 :DTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2041 Number of alignments=242 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set T0305 5 :MKQFVKHIGELYSNNQHGFSEDFE 1rpmA 882 :VADLLQHITQMKCAEGYGFKEEYE T0305 32 :RCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 906 :SFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2046 Number of alignments=243 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEE 1rpmA 882 :VADLLQHITQMKCAEGYGFKEEYES T0305 33 :CTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 907 :FFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2051 Number of alignments=244 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)F2 because first residue in template chain is (1rpmA)A879 Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEEVQ 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYESFF T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 909 :EGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEKRG T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1047 :VHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2056 Number of alignments=245 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)F2 because first residue in template chain is (1rpmA)A879 Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEEVQ 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYESFF T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 909 :EGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEKRG T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1047 :VHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2061 Number of alignments=246 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)F2 because first residue in template chain is (1rpmA)A879 Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEEV 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYESF T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 908 :FEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEKRG T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1047 :VHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2066 Number of alignments=247 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)F2 because first residue in template chain is (1rpmA)A879 Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEEV 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYESF T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 908 :FEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEKRG T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1047 :VHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2071 Number of alignments=248 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQ 1rpmA 881 :RVADLLQHITQMKCAEGYGFKEEYESFF T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 909 :EGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEKRG T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1047 :VHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2076 Number of alignments=249 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQ 1rpmA 881 :RVADLLQHITQMKCAEGYGFKEEYESFF T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 909 :EGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEKRG T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1047 :VHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2081 Number of alignments=250 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEEV 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYESF T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 908 :FEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEKRG T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1047 :VHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2086 Number of alignments=251 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEEV 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYESF T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1rpmA 908 :FEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEGDTN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1rpmA 951 :SDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWP T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1rpmA 1014 :DDTEIYKDIKVTLIETELLAEYVIRTFAVEKRG T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1047 :VHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 5 number of extra gaps= 0 total=2091 Number of alignments=252 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)M5 because first residue in template chain is (1rpmA)A879 Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 6 :KQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYESFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQ T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1rpmA 944 :TIEGDTNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1015 :DTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 4 number of extra gaps= 0 total=2095 Number of alignments=253 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)M5 because first residue in template chain is (1rpmA)A879 Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 6 :KQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYESFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQ T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1rpmA 944 :TIEGDTNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1015 :DTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 4 number of extra gaps= 0 total=2099 Number of alignments=254 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)M5 because first residue in template chain is (1rpmA)A879 Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 6 :KQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1rpmA 880 :IRVADLLQHITQMKCAEGYGFKEEYESFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQ T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1rpmA 944 :TIEGDTNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1015 :DTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 4 number of extra gaps= 0 total=2103 Number of alignments=255 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set Warning: unaligning (T0305)L296 because last residue in template chain is (1rpmA)L1156 T0305 1 :YFQS 1rpmA 879 :AIRV T0305 5 :MKQFVKHI 1rpmA 885 :LLQHITQM T0305 19 :NQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1rpmA 893 :KCAEGYGFKEEYESFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQ T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1rpmA 944 :TIEGDTNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1015 :DTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 6 number of extra gaps= 0 total=2109 Number of alignments=256 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1rpmA 896 :EGYGFKEEYESFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQ T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1rpmA 944 :TIEGDTNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1015 :DTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2113 Number of alignments=257 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1rpmA 891 :QMKCAEGYGFKEEYESFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQ T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1rpmA 944 :TIEGDTNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1015 :DTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEA Number of specific fragments extracted= 4 number of extra gaps= 0 total=2117 Number of alignments=258 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set T0305 11 :HIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1rpmA 885 :LLQHITQMKCAEGYGFKEEYESFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQ T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1rpmA 944 :TIEGDTNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1015 :DTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 4 number of extra gaps= 0 total=2121 Number of alignments=259 # 1rpmA read from 1rpmA/merged-a2m # found chain 1rpmA in template set T0305 13 :GELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1rpmA 887 :QHITQMKCAEGYGFKEEYESFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQ T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1rpmA 944 :TIEGDTNSDYINGNYIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1rpmA 1015 :DTEIYKDIKVTLIETELLAEYVIRTFAVEK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1rpmA 1045 :RGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC Number of specific fragments extracted= 4 number of extra gaps= 0 total=2125 Number of alignments=260 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahsA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2ahsA expands to /projects/compbio/data/pdb/2ahs.pdb.gz 2ahsA:Skipped atom 268, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 272, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 274, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 1087, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 1091, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 1093, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 1095, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 1097, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 1099, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 1632, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 1636, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 1638, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 1640, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 1642, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 1644, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 1646, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 1648, because occupancy 0.500 <= existing 0.500 in 2ahsA Skipped atom 2146, because occupancy 0.250 <= existing 0.750 in 2ahsA Skipped atom 2150, because occupancy 0.250 <= existing 0.750 in 2ahsA Skipped atom 2152, because occupancy 0.250 <= existing 0.750 in 2ahsA # T0305 read from 2ahsA/merged-a2m # 2ahsA read from 2ahsA/merged-a2m # adding 2ahsA to template set # found chain 2ahsA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (2ahsA)Q1687 Warning: unaligning (T0305)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)Q1803 Warning: unaligning (T0305)N127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)Q1803 Warning: unaligning (T0305)K258 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)D1928 Warning: unaligning (T0305)S259 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)D1928 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQ 2ahsA 1688 :FEGHFMKLQADSNYLLSKEYEELK T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPL 2ahsA 1712 :DVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNV T0305 74 :KDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 2ahsA 1750 :DDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV T0305 128 :LVEKGRRKCDQYWPTE 2ahsA 1804 :CVEKGRVKCDHYWPAD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQ 2ahsA 1821 :DSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAH T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVR 2ahsA 1858 :RLIRHFHYTVWPDHGVPETTQSLIQFVR T0305 219 :RSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2ahsA 1888 :RDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 2ahsA 1929 :SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVL Number of specific fragments extracted= 8 number of extra gaps= 2 total=2133 Number of alignments=261 # 2ahsA read from 2ahsA/merged-a2m # found chain 2ahsA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (2ahsA)Q1687 Warning: unaligning (T0305)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)Q1803 Warning: unaligning (T0305)N127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)Q1803 Warning: unaligning (T0305)K258 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)D1928 Warning: unaligning (T0305)S259 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)D1928 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQRC 2ahsA 1688 :FEGHFMKLQADSNYLLSKEYEELKDV T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPL 2ahsA 1714 :GRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNV T0305 74 :KDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 2ahsA 1750 :DDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV T0305 128 :LVEKGRRKCDQYWPTE 2ahsA 1804 :CVEKGRVKCDHYWPAD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2ahsA 1821 :DSLYYGDLILQMLSESVLPEWTIREFKICGEE T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVR 2ahsA 1853 :QLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVR T0305 219 :RSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2ahsA 1888 :RDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 2ahsA 1929 :SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRD Number of specific fragments extracted= 8 number of extra gaps= 2 total=2141 Number of alignments=262 # 2ahsA read from 2ahsA/merged-a2m # found chain 2ahsA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (2ahsA)Q1687 Warning: unaligning (T0305)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)Q1803 Warning: unaligning (T0305)N127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)Q1803 Warning: unaligning (T0305)K258 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)D1928 Warning: unaligning (T0305)S259 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)D1928 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQRCTADM 2ahsA 1688 :FEGHFMKLQADSNYLLSKEYEELKDVGRNQ T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2ahsA 1718 :SCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPC T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 2ahsA 1755 :SDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV T0305 128 :LVEKGRRKCDQYWP 2ahsA 1804 :CVEKGRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2ahsA 1819 :DQDSLYYGDLILQMLSESVLPEWTIREFKICGEE T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2ahsA 1853 :QLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYIN T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2ahsA 1895 :PGAGPTVVHCSAGVGRTGTFIALDRILQQLDS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2ahsA 1929 :SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRA Number of specific fragments extracted= 8 number of extra gaps= 2 total=2149 Number of alignments=263 # 2ahsA read from 2ahsA/merged-a2m # found chain 2ahsA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (2ahsA)Q1687 Warning: unaligning (T0305)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)Q1803 Warning: unaligning (T0305)N127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)Q1803 Warning: unaligning (T0305)K258 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)D1928 Warning: unaligning (T0305)S259 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)D1928 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQRCTA 2ahsA 1688 :FEGHFMKLQADSNYLLSKEYEELKDVGR T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2ahsA 1716 :NQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPC T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 2ahsA 1755 :SDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV T0305 128 :LVEKGRRKCDQYWP 2ahsA 1804 :CVEKGRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNT 2ahsA 1819 :DQDSLYYGDLILQMLSESVLPEWTIREFKICGE T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2ahsA 1852 :EQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYIN T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2ahsA 1895 :PGAGPTVVHCSAGVGRTGTFIALDRILQQLDS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2ahsA 1929 :SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRA Number of specific fragments extracted= 8 number of extra gaps= 2 total=2157 Number of alignments=264 # 2ahsA read from 2ahsA/merged-a2m # found chain 2ahsA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (2ahsA)Q1687 Warning: unaligning (T0305)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)Q1803 Warning: unaligning (T0305)N127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)Q1803 Warning: unaligning (T0305)K258 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)D1928 Warning: unaligning (T0305)S259 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)D1928 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQRCTADM 2ahsA 1688 :FEGHFMKLQADSNYLLSKEYEELKDVGRNQ T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2ahsA 1718 :SCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPC T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 2ahsA 1755 :SDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV T0305 128 :LVEKGRRKCDQYWP 2ahsA 1804 :CVEKGRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2ahsA 1819 :DQDSLYYGDLILQMLSESVLPEWTIREFKICGEE T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2ahsA 1853 :QLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYIN T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2ahsA 1895 :PGAGPTVVHCSAGVGRTGTFIALDRILQQLDS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 2ahsA 1929 :SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVL Number of specific fragments extracted= 8 number of extra gaps= 2 total=2165 Number of alignments=265 # 2ahsA read from 2ahsA/merged-a2m # found chain 2ahsA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (2ahsA)Q1687 Warning: unaligning (T0305)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)Q1803 Warning: unaligning (T0305)N127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)Q1803 Warning: unaligning (T0305)K258 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)D1928 Warning: unaligning (T0305)S259 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)D1928 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQRCTA 2ahsA 1688 :FEGHFMKLQADSNYLLSKEYEELKDVGR T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2ahsA 1716 :NQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPC T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 2ahsA 1755 :SDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV T0305 128 :LVEKGRRKCDQYWP 2ahsA 1804 :CVEKGRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNT 2ahsA 1819 :DQDSLYYGDLILQMLSESVLPEWTIREFKICGE T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2ahsA 1852 :EQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYIN T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2ahsA 1895 :PGAGPTVVHCSAGVGRTGTFIALDRILQQLDS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 2ahsA 1929 :SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVL Number of specific fragments extracted= 8 number of extra gaps= 2 total=2173 Number of alignments=266 # 2ahsA read from 2ahsA/merged-a2m # found chain 2ahsA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (2ahsA)Q1687 Warning: unaligning (T0305)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)Q1803 Warning: unaligning (T0305)N127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)Q1803 Warning: unaligning (T0305)K258 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)D1928 Warning: unaligning (T0305)S259 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)D1928 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQ 2ahsA 1688 :FEGHFMKLQADSNYLLSKEYEELK T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2ahsA 1712 :DVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPC T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 2ahsA 1755 :SDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV T0305 128 :LVEKGRRKCDQYWP 2ahsA 1804 :CVEKGRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 2ahsA 1819 :DQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2ahsA 1854 :LDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYIN T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2ahsA 1895 :PGAGPTVVHCSAGVGRTGTFIALDRILQQLDS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2ahsA 1929 :SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRA Number of specific fragments extracted= 8 number of extra gaps= 2 total=2181 Number of alignments=267 # 2ahsA read from 2ahsA/merged-a2m # found chain 2ahsA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (2ahsA)Q1687 Warning: unaligning (T0305)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)Q1803 Warning: unaligning (T0305)N127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)Q1803 Warning: unaligning (T0305)K258 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)D1928 Warning: unaligning (T0305)S259 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)D1928 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQ 2ahsA 1688 :FEGHFMKLQADSNYLLSKEYEELK T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2ahsA 1712 :DVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPC T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 2ahsA 1755 :SDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV T0305 128 :LVEKGRRKCDQYWP 2ahsA 1804 :CVEKGRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 2ahsA 1819 :DQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2ahsA 1854 :LDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYIN T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2ahsA 1895 :PGAGPTVVHCSAGVGRTGTFIALDRILQQLDS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2ahsA 1929 :SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRA Number of specific fragments extracted= 8 number of extra gaps= 2 total=2189 Number of alignments=268 # 2ahsA read from 2ahsA/merged-a2m # found chain 2ahsA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (2ahsA)Q1687 Warning: unaligning (T0305)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)Q1803 Warning: unaligning (T0305)N127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)Q1803 Warning: unaligning (T0305)K258 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)D1928 Warning: unaligning (T0305)S259 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)D1928 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQ 2ahsA 1688 :FEGHFMKLQADSNYLLSKEYEELK T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2ahsA 1712 :DVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPC T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 2ahsA 1755 :SDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV T0305 128 :LVEKGRRKCDQYWP 2ahsA 1804 :CVEKGRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 2ahsA 1819 :DQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2ahsA 1854 :LDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYIN T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2ahsA 1895 :PGAGPTVVHCSAGVGRTGTFIALDRILQQLDS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 2ahsA 1929 :SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVL Number of specific fragments extracted= 8 number of extra gaps= 2 total=2197 Number of alignments=269 # 2ahsA read from 2ahsA/merged-a2m # found chain 2ahsA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (2ahsA)Q1687 Warning: unaligning (T0305)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)Q1803 Warning: unaligning (T0305)N127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)Q1803 Warning: unaligning (T0305)K258 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)D1928 Warning: unaligning (T0305)S259 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)D1928 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQ 2ahsA 1688 :FEGHFMKLQADSNYLLSKEYEELK T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2ahsA 1712 :DVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPC T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 2ahsA 1755 :SDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV T0305 128 :LVEKGRRKCDQYWP 2ahsA 1804 :CVEKGRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 2ahsA 1819 :DQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQ T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2ahsA 1854 :LDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYIN T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2ahsA 1895 :PGAGPTVVHCSAGVGRTGTFIALDRILQQLDS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 2ahsA 1929 :SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVL Number of specific fragments extracted= 8 number of extra gaps= 2 total=2205 Number of alignments=270 # 2ahsA read from 2ahsA/merged-a2m # found chain 2ahsA in template set Warning: unaligning (T0305)V9 because first residue in template chain is (2ahsA)Q1687 Warning: unaligning (T0305)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)Q1803 Warning: unaligning (T0305)N127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)Q1803 Warning: unaligning (T0305)K258 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)D1928 Warning: unaligning (T0305)S259 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)D1928 T0305 10 :KHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2ahsA 1688 :FEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLS T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 2ahsA 1748 :NVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV T0305 128 :LVEKGRRKCDQYWPT 2ahsA 1804 :CVEKGRVKCDHYWPA T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2ahsA 1820 :QDSLYYGDLILQMLSESVLPEWTIREFKICG T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2ahsA 1851 :EEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYIN T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2ahsA 1895 :PGAGPTVVHCSAGVGRTGTFIALDRILQQLDS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2ahsA 1929 :SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRA Number of specific fragments extracted= 7 number of extra gaps= 2 total=2212 Number of alignments=271 # 2ahsA read from 2ahsA/merged-a2m # found chain 2ahsA in template set Warning: unaligning (T0305)V9 because first residue in template chain is (2ahsA)Q1687 Warning: unaligning (T0305)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)Q1803 Warning: unaligning (T0305)N127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)Q1803 Warning: unaligning (T0305)K258 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)D1928 Warning: unaligning (T0305)S259 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)D1928 T0305 10 :KHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2ahsA 1688 :FEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLS T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 2ahsA 1748 :NVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV T0305 128 :LVEKGRRKCDQYWPT 2ahsA 1804 :CVEKGRVKCDHYWPA T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2ahsA 1820 :QDSLYYGDLILQMLSESVLPEWTIREFKICG T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2ahsA 1851 :EEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYIN T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2ahsA 1895 :PGAGPTVVHCSAGVGRTGTFIALDRILQQLDS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2ahsA 1929 :SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRA Number of specific fragments extracted= 7 number of extra gaps= 2 total=2219 Number of alignments=272 # 2ahsA read from 2ahsA/merged-a2m # found chain 2ahsA in template set Warning: unaligning (T0305)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)Q1803 Warning: unaligning (T0305)N127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)Q1803 Warning: unaligning (T0305)K258 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)D1928 Warning: unaligning (T0305)S259 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)D1928 T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2ahsA 1700 :NYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLS T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 2ahsA 1748 :NVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV T0305 128 :LVEKGRRKCDQYWPT 2ahsA 1804 :CVEKGRVKCDHYWPA T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2ahsA 1820 :QDSLYYGDLILQMLSESVLPEWTIREFKICG T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2ahsA 1851 :EEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYIN T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2ahsA 1895 :PGAGPTVVHCSAGVGRTGTFIALDRILQQLDS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 2ahsA 1929 :SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVL Number of specific fragments extracted= 7 number of extra gaps= 2 total=2226 Number of alignments=273 # 2ahsA read from 2ahsA/merged-a2m # found chain 2ahsA in template set Warning: unaligning (T0305)T126 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)Q1803 Warning: unaligning (T0305)N127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)Q1803 Warning: unaligning (T0305)K258 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2ahsA)D1928 Warning: unaligning (T0305)S259 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2ahsA)D1928 T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2ahsA 1695 :LQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLS T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 2ahsA 1748 :NVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMV T0305 128 :LVEKGRRKCDQYWPT 2ahsA 1804 :CVEKGRVKCDHYWPA T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2ahsA 1820 :QDSLYYGDLILQMLSESVLPEWTIREFKICG T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 2ahsA 1851 :EEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYIN T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 2ahsA 1895 :PGAGPTVVHCSAGVGRTGTFIALDRILQQLDS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 2ahsA 1929 :SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVL Number of specific fragments extracted= 7 number of extra gaps= 2 total=2233 Number of alignments=274 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ygrA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ygrA expands to /projects/compbio/data/pdb/1ygr.pdb.gz 1ygrA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0305 read from 1ygrA/merged-a2m # 1ygrA read from 1ygrA/merged-a2m # adding 1ygrA to template set # found chain 1ygrA in template set T0305 23 :FSEDFEEVQRCTADMNI 1ygrA 628 :FLAEFQSIPRVFSKFPI T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1ygrA 645 :KEARKPFNQNKNRYVDILPYDYNRVELSEINGDAG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1ygrA 680 :SNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWPS T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVK 1ygrA 746 :EGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKKEK T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1ygrA 781 :ATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEAENKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVE Number of specific fragments extracted= 5 number of extra gaps= 0 total=2238 Number of alignments=275 # 1ygrA read from 1ygrA/merged-a2m # found chain 1ygrA in template set T0305 20 :QHGFSEDFEEVQRCTADMNIT 1ygrA 625 :GRPFLAEFQSIPRVFSKFPIK T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 1ygrA 646 :EARKPFNQNKNRYVDILPYDYNRVELSEINGDA T0305 78 :HSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1ygrA 679 :GSNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWPS T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVK 1ygrA 746 :EGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKKEK T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1ygrA 781 :ATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEAENKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVE Number of specific fragments extracted= 5 number of extra gaps= 0 total=2243 Number of alignments=276 # 1ygrA read from 1ygrA/merged-a2m # found chain 1ygrA in template set Warning: unaligning (T0305)L296 because last residue in template chain is (1ygrA)P1205 T0305 1 :YFQSMKQ 1ygrA 604 :NVEPIHA T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQRCTADM 1ygrA 613 :LLETYKRKIADEGRPFLAEFQSIPRVFSKF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1ygrA 643 :PIKEARKPFNQNKNRYVDILPYDYNRVELSEINGDAG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1ygrA 680 :SNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1ygrA 745 :EEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKK T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1ygrA 779 :EKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLE T0305 257 :DKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1ygrA 1166 :TEEVVDIFQVVKALRKARLGMVSTFEQYQFLYDVIASTY Number of specific fragments extracted= 7 number of extra gaps= 0 total=2250 Number of alignments=277 # 1ygrA read from 1ygrA/merged-a2m # found chain 1ygrA in template set Warning: unaligning (T0305)L296 because last residue in template chain is (1ygrA)P1205 T0305 1 :YFQSMKQ 1ygrA 604 :NVEPIHA T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQRCTADM 1ygrA 613 :LLETYKRKIADEGRPFLAEFQSIPRVFSKF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1ygrA 643 :PIKEARKPFNQNKNRYVDILPYDYNRVELSEINGDAG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1ygrA 680 :SNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1ygrA 745 :EEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKK T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1ygrA 779 :EKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLE T0305 257 :DKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1ygrA 1166 :TEEVVDIFQVVKALRKARLGMVSTFEQYQFLYDVIASTY Number of specific fragments extracted= 7 number of extra gaps= 0 total=2257 Number of alignments=278 # 1ygrA read from 1ygrA/merged-a2m # found chain 1ygrA in template set T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQRCTADM 1ygrA 613 :LLETYKRKIADEGRPFLAEFQSIPRVFSKF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1ygrA 643 :PIKEARKPFNQNKNRYVDILPYDYNRVELSEINGDAG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1ygrA 680 :SNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1ygrA 745 :EEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKK T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1ygrA 779 :EKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEAENKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEY Number of specific fragments extracted= 5 number of extra gaps= 0 total=2262 Number of alignments=279 # 1ygrA read from 1ygrA/merged-a2m # found chain 1ygrA in template set T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQRCTADM 1ygrA 613 :LLETYKRKIADEGRPFLAEFQSIPRVFSKF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1ygrA 643 :PIKEARKPFNQNKNRYVDILPYDYNRVELSEINGDAG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1ygrA 680 :SNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1ygrA 745 :EEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKK T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1ygrA 779 :EKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEAENKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEYN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2267 Number of alignments=280 # 1ygrA read from 1ygrA/merged-a2m # found chain 1ygrA in template set Warning: unaligning (T0305)L296 because last residue in template chain is (1ygrA)P1205 T0305 1 :YFQSMKQ 1ygrA 601 :QLMNVEP T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQ 1ygrA 613 :LLETYKRKIADEGRPFLAEFQSIP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1ygrA 637 :RVFSKFPIKEARKPFNQNKNRYVDILPYDYNRVELSEINGDAG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1ygrA 680 :SNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 1ygrA 745 :EEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKKE T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1ygrA 780 :KATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEAENK T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1ygrA 1170 :VDIFQVVKALRKARLGMVSTFEQYQFLYDVIASTY Number of specific fragments extracted= 7 number of extra gaps= 0 total=2274 Number of alignments=281 # 1ygrA read from 1ygrA/merged-a2m # found chain 1ygrA in template set Warning: unaligning (T0305)L296 because last residue in template chain is (1ygrA)P1205 T0305 1 :YFQSMKQ 1ygrA 601 :QLMNVEP T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQ 1ygrA 613 :LLETYKRKIADEGRPFLAEFQSIP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1ygrA 637 :RVFSKFPIKEARKPFNQNKNRYVDILPYDYNRVELSEINGDAG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1ygrA 680 :SNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 1ygrA 745 :EEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKKE T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1ygrA 780 :KATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEAENK T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1ygrA 1170 :VDIFQVVKALRKARLGMVSTFEQYQFLYDVIASTY Number of specific fragments extracted= 7 number of extra gaps= 0 total=2281 Number of alignments=282 # 1ygrA read from 1ygrA/merged-a2m # found chain 1ygrA in template set T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQ 1ygrA 613 :LLETYKRKIADEGRPFLAEFQSIP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1ygrA 637 :RVFSKFPIKEARKPFNQNKNRYVDILPYDYNRVELSEINGDAG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1ygrA 680 :SNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 1ygrA 745 :EEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKKE T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1ygrA 780 :KATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEAENKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEY Number of specific fragments extracted= 5 number of extra gaps= 0 total=2286 Number of alignments=283 # 1ygrA read from 1ygrA/merged-a2m # found chain 1ygrA in template set T0305 9 :VKHIGELYSNNQHGFSEDFEEVQ 1ygrA 614 :LETYKRKIADEGRPFLAEFQSIP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1ygrA 637 :RVFSKFPIKEARKPFNQNKNRYVDILPYDYNRVELSEINGDAG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1ygrA 680 :SNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 1ygrA 745 :EEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKKE T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1ygrA 780 :KATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEAENKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEYN Number of specific fragments extracted= 5 number of extra gaps= 0 total=2291 Number of alignments=284 # 1ygrA read from 1ygrA/merged-a2m # found chain 1ygrA in template set Warning: unaligning (T0305)L296 because last residue in template chain is (1ygrA)P1205 T0305 1 :Y 1ygrA 599 :E T0305 2 :FQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ygrA 605 :VEPIHADILLETYKRKIADEGRPFLAEFQSIPRVFSKFPIKEARKPFNQNKNRYVDILPYDYNRVELS T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1ygrA 673 :EINGDAGSNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWPS T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1ygrA 746 :EGTRAFGDVVVKINQHKRCPDYIIQKLNIVN T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 1ygrA 777 :KKEKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEA T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1ygrA 1167 :EEVVDIFQVVKALRKARLGMVSTFEQYQFLYDVIASTY Number of specific fragments extracted= 6 number of extra gaps= 0 total=2297 Number of alignments=285 # 1ygrA read from 1ygrA/merged-a2m # found chain 1ygrA in template set Warning: unaligning (T0305)L296 because last residue in template chain is (1ygrA)P1205 T0305 1 :Y 1ygrA 599 :E T0305 2 :FQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ygrA 605 :VEPIHADILLETYKRKIADEGRPFLAEFQSIPRVFSKFPIKEARKPFNQNKNRYVDILPYDYNRVELS T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1ygrA 673 :EINGDAGSNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWPS T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1ygrA 746 :EGTRAFGDVVVKINQHKRCPDYIIQKLNIVN T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 1ygrA 777 :KKEKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEA T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1ygrA 1167 :EEVVDIFQVVKALRKARLGMVSTFEQYQFLYDVIASTY Number of specific fragments extracted= 6 number of extra gaps= 0 total=2303 Number of alignments=286 # 1ygrA read from 1ygrA/merged-a2m # found chain 1ygrA in template set T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ygrA 625 :GRPFLAEFQSIPRVFSKFPIKEARKPFNQNKNRYVDILPYDYNRVELS T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1ygrA 673 :EINGDAGSNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWPS T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1ygrA 746 :EGTRAFGDVVVKINQHKRCPDYIIQKLNIVN T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1ygrA 777 :KKEKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEAENKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEY Number of specific fragments extracted= 4 number of extra gaps= 0 total=2307 Number of alignments=287 # 1ygrA read from 1ygrA/merged-a2m # found chain 1ygrA in template set T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ygrA 620 :KIADEGRPFLAEFQSIPRVFSKFPIKEARKPFNQNKNRYVDILPYDYNRVELS T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1ygrA 673 :EINGDAGSNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWPS T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1ygrA 746 :EGTRAFGDVVVKINQHKRCPDYIIQKLNIVN T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1ygrA 777 :KKEKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEAENKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEY Number of specific fragments extracted= 4 number of extra gaps= 0 total=2311 Number of alignments=288 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2g59A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2g59A expands to /projects/compbio/data/pdb/2g59.pdb.gz 2g59A:# T0305 read from 2g59A/merged-a2m # 2g59A read from 2g59A/merged-a2m # adding 2g59A to template set # found chain 2g59A in template set T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITA 2g59A 9 :LDDFDAYIKDMAKDSDYKFSLQFEELKLIGLDIPHFA T0305 44 :SNHPENKHKNRYINILAYDHSRVKLRPL 2g59A 46 :ADLPLNRCKNRYTNILPYDFSRVRLVSM T0305 74 :KDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2g59A 74 :NEEEGADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKG 2g59A 143 :TEEPIAYGDITVEMISEEEQDDWACRHFRINYADEMQD T0305 193 :VIQYHYTQWPDMGVP 2g59A 181 :VMHFNYTAWPDHGVP T0305 211 :LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 2g59A 201 :ESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCV Number of specific fragments extracted= 6 number of extra gaps= 0 total=2317 Number of alignments=289 # 2g59A read from 2g59A/merged-a2m # found chain 2g59A in template set Warning: unaligning (T0305)E208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2g59A)A200 T0305 6 :KQFVKHIGELYSNNQHGFSEDFEEVQRCTADMN 2g59A 10 :DDFDAYIKDMAKDSDYKFSLQFEELKLIGLDIP T0305 41 :AEHSNHPENKHKNRYINILAYDHSRVKLRPLP 2g59A 43 :HFAADLPLNRCKNRYTNILPYDFSRVRLVSMN T0305 75 :DSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2g59A 75 :EEEGADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 2g59A 143 :TEEPIAYGDITVEMISEEEQDDWACRHFRINYAD T0305 189 :NERVVIQYHYTQWPDMGVP 2g59A 177 :EMQDVMHFNYTAWPDHGVP T0305 211 :LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 2g59A 201 :ESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCV Number of specific fragments extracted= 6 number of extra gaps= 1 total=2323 Number of alignments=290 # 2g59A read from 2g59A/merged-a2m # found chain 2g59A in template set Warning: unaligning (T0305)E208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2g59A)A200 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQ 2g59A 5 :NPVQLDDFDAYIKDMAKDSDYKFSLQFEELK T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2g59A 36 :LIGLDIPHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2g59A 79 :ADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2g59A 143 :TEEPIAYGDITVEMISEEEQDDWACRHFRINY T0305 187 :RQNERVVIQYHYTQWPDMGVP 2g59A 175 :ADEMQDVMHFNYTAWPDHGVP T0305 211 :LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2g59A 201 :ESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWMK Number of specific fragments extracted= 6 number of extra gaps= 1 total=2329 Number of alignments=291 # 2g59A read from 2g59A/merged-a2m # found chain 2g59A in template set Warning: unaligning (T0305)E208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2g59A)A200 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQR 2g59A 5 :NPVQLDDFDAYIKDMAKDSDYKFSLQFEELKL T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2g59A 37 :IGLDIPHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2g59A 79 :ADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2g59A 143 :TEEPIAYGDITVEMISEEEQDDWACRHFRINY T0305 187 :RQNERVVIQYHYTQWPDMGVP 2g59A 175 :ADEMQDVMHFNYTAWPDHGVP T0305 211 :LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2g59A 201 :ESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWMK Number of specific fragments extracted= 6 number of extra gaps= 1 total=2335 Number of alignments=292 # 2g59A read from 2g59A/merged-a2m # found chain 2g59A in template set Warning: unaligning (T0305)E208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2g59A)A200 T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQ 2g59A 8 :QLDDFDAYIKDMAKDSDYKFSLQFEELK T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2g59A 36 :LIGLDIPHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2g59A 79 :ADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2g59A 143 :TEEPIAYGDITVEMISEEEQDDWACRHFRINY T0305 187 :RQNERVVIQYHYTQWPDMGVP 2g59A 175 :ADEMQDVMHFNYTAWPDHGVP T0305 211 :LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2g59A 201 :ESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWMK Number of specific fragments extracted= 6 number of extra gaps= 1 total=2341 Number of alignments=293 # 2g59A read from 2g59A/merged-a2m # found chain 2g59A in template set Warning: unaligning (T0305)E208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2g59A)A200 T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQR 2g59A 8 :QLDDFDAYIKDMAKDSDYKFSLQFEELKL T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2g59A 37 :IGLDIPHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2g59A 79 :ADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2g59A 143 :TEEPIAYGDITVEMISEEEQDDWACRHFRINY T0305 187 :RQNERVVIQYHYTQWPDMGVP 2g59A 175 :ADEMQDVMHFNYTAWPDHGVP T0305 211 :LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2g59A 201 :ESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWM Number of specific fragments extracted= 6 number of extra gaps= 1 total=2347 Number of alignments=294 # 2g59A read from 2g59A/merged-a2m # found chain 2g59A in template set Warning: unaligning (T0305)E208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2g59A)A200 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADM 2g59A 5 :NPVQLDDFDAYIKDMAKDSDYKFSLQFEELKLIGLDI T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2g59A 42 :PHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2g59A 79 :ADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2g59A 143 :TEEPIAYGDITVEMISEEEQDDWACRHFRINY T0305 187 :RQNERVVIQYHYTQWPDMGVP 2g59A 175 :ADEMQDVMHFNYTAWPDHGVP T0305 211 :LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2g59A 201 :ESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWMK Number of specific fragments extracted= 6 number of extra gaps= 1 total=2353 Number of alignments=295 # 2g59A read from 2g59A/merged-a2m # found chain 2g59A in template set Warning: unaligning (T0305)E208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2g59A)A200 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCT 2g59A 5 :NPVQLDDFDAYIKDMAKDSDYKFSLQFEELKLIG T0305 37 :MNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2g59A 39 :LDIPHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2g59A 79 :ADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2g59A 143 :TEEPIAYGDITVEMISEEEQDDWACRHFRINY T0305 187 :RQNERVVIQYHYTQWPDMGVP 2g59A 175 :ADEMQDVMHFNYTAWPDHGVP T0305 211 :LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2g59A 201 :ESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWMK Number of specific fragments extracted= 6 number of extra gaps= 1 total=2359 Number of alignments=296 # 2g59A read from 2g59A/merged-a2m # found chain 2g59A in template set Warning: unaligning (T0305)E208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2g59A)A200 T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADM 2g59A 8 :QLDDFDAYIKDMAKDSDYKFSLQFEELKLIGLDI T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2g59A 42 :PHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2g59A 79 :ADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2g59A 143 :TEEPIAYGDITVEMISEEEQDDWACRHFRINY T0305 187 :RQNERVVIQYHYTQWPDMGVP 2g59A 175 :ADEMQDVMHFNYTAWPDHGVP T0305 211 :LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2g59A 201 :ESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWMK Number of specific fragments extracted= 6 number of extra gaps= 1 total=2365 Number of alignments=297 # 2g59A read from 2g59A/merged-a2m # found chain 2g59A in template set Warning: unaligning (T0305)E208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2g59A)A200 T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQRCT 2g59A 8 :QLDDFDAYIKDMAKDSDYKFSLQFEELKLIG T0305 37 :MNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 2g59A 39 :LDIPHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 2g59A 79 :ADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWP T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2g59A 143 :TEEPIAYGDITVEMISEEEQDDWACRHFRINY T0305 187 :RQNERVVIQYHYTQWPDMGVP 2g59A 175 :ADEMQDVMHFNYTAWPDHGVP T0305 211 :LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 2g59A 201 :ESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWM Number of specific fragments extracted= 6 number of extra gaps= 1 total=2371 Number of alignments=298 # 2g59A read from 2g59A/merged-a2m # found chain 2g59A in template set Warning: unaligning (T0305)E208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2g59A)A200 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2g59A 3 :LTNPVQLDDFDAYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILPYDFSRVRLV T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2g59A 72 :SMNEEEGADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPF T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2g59A 144 :EEPIAYGDITVEMISEEEQDDWACRHFRINY T0305 187 :RQNERVVIQYHYTQWPDMGVP 2g59A 175 :ADEMQDVMHFNYTAWPDHGVP T0305 211 :LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2g59A 201 :ESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWMK Number of specific fragments extracted= 5 number of extra gaps= 1 total=2376 Number of alignments=299 # 2g59A read from 2g59A/merged-a2m # found chain 2g59A in template set Warning: unaligning (T0305)F2 because first residue in template chain is (2g59A)S2 Warning: unaligning (T0305)E208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2g59A)A200 T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2g59A 5 :NPVQLDDFDAYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILPYDFSRVRLV T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2g59A 72 :SMNEEEGADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPF T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2g59A 144 :EEPIAYGDITVEMISEEEQDDWACRHFRINY T0305 187 :RQNERVVIQYHYTQWPDMGVP 2g59A 175 :ADEMQDVMHFNYTAWPDHGVP T0305 211 :LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 2g59A 201 :ESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWMK Number of specific fragments extracted= 5 number of extra gaps= 1 total=2381 Number of alignments=300 # 2g59A read from 2g59A/merged-a2m # found chain 2g59A in template set Warning: unaligning (T0305)E208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2g59A)A200 T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2g59A 24 :DYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILPYDFSRVRLV T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2g59A 72 :SMNEEEGADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPF T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2g59A 144 :EEPIAYGDITVEMISEEEQDDWACRHFRINY T0305 187 :RQNERVVIQYHYTQWPDMGVP 2g59A 175 :ADEMQDVMHFNYTAWPDHGVP T0305 211 :LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 2g59A 201 :ESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCV Number of specific fragments extracted= 5 number of extra gaps= 1 total=2386 Number of alignments=301 # 2g59A read from 2g59A/merged-a2m # found chain 2g59A in template set Warning: unaligning (T0305)E208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2g59A)A200 T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 2g59A 19 :MAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILPYDFSRVRLV T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 2g59A 72 :SMNEEEGADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPF T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 2g59A 144 :EEPIAYGDITVEMISEEEQDDWACRHFRINY T0305 187 :RQNERVVIQYHYTQWPDMGVP 2g59A 175 :ADEMQDVMHFNYTAWPDHGVP T0305 211 :LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 2g59A 201 :ESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQL Number of specific fragments extracted= 5 number of extra gaps= 1 total=2391 Number of alignments=302 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rxdA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 1rxdA/merged-a2m # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 1 :YFQSMKQFVKHIGELYSNNQH 1rxdA 8 :PVEVTYKNMRFLITHNPTNAT T0305 107 :FEDFWRMIWEQNTGIIVMI 1rxdA 29 :LNKFIEELKKYGVTTIVRV T0305 182 :GNPKGRQNERVVIQYHYTQWP 1rxdA 48 :CEATYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALIEGG T0305 261 :VNVLGFLKHIRTQRNYLVQT 1rxdA 123 :MKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDALLEAILG 1rxdA 143 :KQLLYLEKYRPKMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=2398 Number of alignments=303 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 1 :YFQSMKQFVKHIGELYSNNQ 1rxdA 8 :PVEVTYKNMRFLITHNPTNA T0305 107 :FEDFWRMIWEQNTGIIVMI 1rxdA 29 :LNKFIEELKKYGVTTIVRV T0305 182 :GNPKGRQNERVVIQYHYTQWP 1rxdA 48 :CEATYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAA 1rxdA 73 :APPSNQIVDDWLSLVKIK T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1rxdA 92 :REEPGCCIAVHCVAGLGRAPVLVALALIEGG T0305 261 :VNVLGFLKHIRTQRNYLVQT 1rxdA 123 :MKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDALLEAILG 1rxdA 143 :KQLLYLEKYRPKMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=2405 Number of alignments=304 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)Y86 because first residue in template chain is (1rxdA)P8 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 1rxdA 9 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRV T0305 182 :GNPKGRQNERVVIQYHYTQWP 1rxdA 48 :CEATYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALIEGG T0305 261 :VNVLGFLKHIRTQRNYLVQT 1rxdA 123 :MKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDALLEAI 1rxdA 143 :KQLLYLEKYRPKMR Number of specific fragments extracted= 6 number of extra gaps= 0 total=2411 Number of alignments=305 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 1rxdA 9 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRV T0305 182 :GNPKGRQNERVVIQYHYTQWP 1rxdA 48 :CEATYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAA 1rxdA 73 :APPSNQIVDDWLSLVKIK T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1rxdA 92 :REEPGCCIAVHCVAGLGRAPVLVALALIEGG T0305 261 :VNVLGFLKHIRTQRNYLVQT 1rxdA 123 :MKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDALLEA 1rxdA 143 :KQLLYLEKYRPKM Number of specific fragments extracted= 6 number of extra gaps= 0 total=2417 Number of alignments=306 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)D203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rxdA)G72 T0305 88 :DGYNKAK 1rxdA 11 :VTYKNMR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMI 1rxdA 18 :FLITHNPTNATLNKFIEELKKYGVTTIVRV T0305 182 :GNPKGRQNERVVIQYHYTQWP 1rxdA 48 :CEATYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAA 1rxdA 73 :APPSNQIVDDWLSLVKIK T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1rxdA 92 :REEPGCCIAVHCVAGLGRAPVLVALALIEGG T0305 261 :VNVLGFLKHIRTQRNYLVQT 1rxdA 123 :MKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDA 1rxdA 143 :KQLLYLEKY T0305 293 :EAILG 1rxdA 152 :RPKMR Number of specific fragments extracted= 8 number of extra gaps= 0 total=2425 Number of alignments=307 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)D203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rxdA)G72 T0305 88 :DGYNKAK 1rxdA 11 :VTYKNMR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMI 1rxdA 18 :FLITHNPTNATLNKFIEELKKYGVTTIVRV T0305 182 :GNPKGRQNERVVIQYHYTQWP 1rxdA 48 :CEATYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAA 1rxdA 73 :APPSNQIVDDWLSLVKIK T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1rxdA 92 :REEPGCCIAVHCVAGLGRAPVLVALALIEGG T0305 261 :VNVLGFLKHIRTQRNYLVQT 1rxdA 123 :MKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDA 1rxdA 143 :KQLLYLEKY T0305 293 :EAILG 1rxdA 152 :RPKMR Number of specific fragments extracted= 8 number of extra gaps= 0 total=2433 Number of alignments=308 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)D203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rxdA)G72 T0305 88 :DGYNKAK 1rxdA 11 :VTYKNMR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMI 1rxdA 18 :FLITHNPTNATLNKFIEELKKYGVTTIVRV T0305 182 :GNPKGRQNERVVIQYHYTQWP 1rxdA 48 :CEATYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAA 1rxdA 73 :APPSNQIVDDWLSLVKIK T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1rxdA 92 :REEPGCCIAVHCVAGLGRAPVLVALALIEGG T0305 261 :VNVLGFLKHIRTQRNYLVQT 1rxdA 123 :MKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDA 1rxdA 143 :KQLLYLEKY T0305 292 :LEAI 1rxdA 152 :RPKM Number of specific fragments extracted= 8 number of extra gaps= 0 total=2441 Number of alignments=309 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)D203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rxdA)G72 T0305 88 :DGYNKAK 1rxdA 11 :VTYKNMR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMI 1rxdA 18 :FLITHNPTNATLNKFIEELKKYGVTTIVRV T0305 182 :GNPKGRQNERVVIQYHYTQWP 1rxdA 48 :CEATYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAA 1rxdA 73 :APPSNQIVDDWLSLVKIK T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1rxdA 92 :REEPGCCIAVHCVAGLGRAPVLVALALIEGG T0305 261 :VNVLGFLKHIRTQRNYLVQT 1rxdA 123 :MKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDA 1rxdA 143 :KQLLYLEKY T0305 292 :LE 1rxdA 152 :RP Number of specific fragments extracted= 8 number of extra gaps= 0 total=2449 Number of alignments=310 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)Y86 because first residue in template chain is (1rxdA)P8 Warning: unaligning (T0305)D203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rxdA)G72 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQY 1rxdA 9 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEG T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1rxdA 74 :PPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLVQT 1rxdA 121 :GGMKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDALLEAILG 1rxdA 143 :KQLLYLEKYRPKMRLR Number of specific fragments extracted= 5 number of extra gaps= 0 total=2454 Number of alignments=311 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)D203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rxdA)G72 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQY 1rxdA 9 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEG T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VP 1rxdA 74 :PP T0305 209 :YALPVLTFVRRSSA 1rxdA 76 :SNQIVDDWLSLVKI T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSML 1rxdA 91 :FREEPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLVQT 1rxdA 121 :GGMKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDALLEAILG 1rxdA 143 :KQLLYLEKYRPKMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=2461 Number of alignments=312 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)D203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rxdA)G72 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQY 1rxdA 9 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEG T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1rxdA 74 :PPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLVQT 1rxdA 121 :GGMKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDALLE 1rxdA 143 :KQLLYLEKYRPK Number of specific fragments extracted= 5 number of extra gaps= 0 total=2466 Number of alignments=313 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)D203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rxdA)G72 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQY 1rxdA 9 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEG T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VP 1rxdA 74 :PP T0305 209 :YALPVLTFVRRSSA 1rxdA 76 :SNQIVDDWLSLVKI T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSML 1rxdA 91 :FREEPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLVQT 1rxdA 121 :GGMKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDALLEA 1rxdA 143 :KQLLYLEKYRPKM Number of specific fragments extracted= 7 number of extra gaps= 0 total=2473 Number of alignments=314 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set T0305 231 :VLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVL 1rxdA 99 :IAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=2474 Number of alignments=315 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 206 :VPEYALPVLTFVRRSSAARMPETG 1rxdA 73 :APPSNQIVDDWLSLVKIKFREEPG T0305 230 :PVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTV 1rxdA 98 :CIAVHCVAGLGRAPVLVALALIEGGMKYEDAV Number of specific fragments extracted= 2 number of extra gaps= 0 total=2476 Number of alignments=316 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)E42 because first residue in template chain is (1rxdA)P8 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 43 :HSNHPENKH 1rxdA 9 :VEVTYKNMR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1rxdA 18 :FLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 187 :RQNERVVIQYHYTQWP 1rxdA 53 :DTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSS 1rxdA 73 :APPSNQIVDDWLSLVK T0305 222 :AARMPETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 90 :KFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTE 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSK T0305 283 :QYIFIHDALLEAILG 1rxdA 144 :QLLYLEKYRPKMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=2483 Number of alignments=317 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)E42 because first residue in template chain is (1rxdA)P8 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 43 :HS 1rxdA 9 :VE T0305 89 :GYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1rxdA 11 :VTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 187 :RQNERVVIQYHYTQWP 1rxdA 53 :DTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSS 1rxdA 73 :APPSNQIVDDWLSLVK T0305 222 :AARMPETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 90 :KFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTE 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSK T0305 283 :QYIFIHDALLEAILG 1rxdA 144 :QLLYLEKYRPKMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=2490 Number of alignments=318 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)Y86 because first residue in template chain is (1rxdA)P8 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1rxdA 9 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 130 :EKGR 1rxdA 58 :EKEG T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSS 1rxdA 73 :APPSNQIVDDWLSLVK T0305 222 :AARMPETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 90 :KFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEE 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSKQ T0305 292 :LEAILG 1rxdA 145 :LLYLEK Number of specific fragments extracted= 7 number of extra gaps= 0 total=2497 Number of alignments=319 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)H63 because first residue in template chain is (1rxdA)P8 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 64 :SRVK 1rxdA 9 :VEVT T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1rxdA 13 :YKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 130 :EK 1rxdA 58 :EK T0305 185 :KG 1rxdA 60 :EG T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTE 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSK T0305 283 :Q 1rxdA 144 :Q T0305 292 :LEAILG 1rxdA 145 :LLYLEK Number of specific fragments extracted= 10 number of extra gaps= 0 total=2507 Number of alignments=320 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1rxdA 17 :RFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 187 :RQNERVVIQYHYTQWP 1rxdA 53 :DTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSS 1rxdA 73 :APPSNQIVDDWLSLVK T0305 222 :AARMPETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 90 :KFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIF 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSKQLLYL Number of specific fragments extracted= 5 number of extra gaps= 0 total=2512 Number of alignments=321 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 93 :AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1rxdA 15 :NMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 185 :K 1rxdA 52 :Y T0305 187 :RQNERVVIQYHYTQWP 1rxdA 53 :DTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSS 1rxdA 73 :APPSNQIVDDWLSLVK T0305 222 :AARMPETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 90 :KFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQY 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSKQLL Number of specific fragments extracted= 6 number of extra gaps= 0 total=2518 Number of alignments=322 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1rxdA 9 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 130 :EKGR 1rxdA 58 :EKEG T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSS 1rxdA 73 :APPSNQIVDDWLSLVK T0305 222 :AARMPETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 90 :KFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEE 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSKQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=2524 Number of alignments=323 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 92 :KAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1rxdA 14 :KNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 130 :EK 1rxdA 58 :EK T0305 185 :KG 1rxdA 60 :EG T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLV 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAF T0305 280 :TEEQYIFIH 1rxdA 141 :NSKQLLYLE Number of specific fragments extracted= 8 number of extra gaps= 0 total=2532 Number of alignments=324 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)E42 because first residue in template chain is (1rxdA)P8 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 43 :HSNHPENK 1rxdA 9 :VEVTYKNM T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1rxdA 17 :RFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 187 :RQNERVVIQYHYTQWP 1rxdA 53 :DTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRS 1rxdA 73 :APPSNQIVDDWLSLV T0305 221 :SAARMPETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 89 :IKFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRF Number of specific fragments extracted= 6 number of extra gaps= 0 total=2538 Number of alignments=325 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)Y86 because first residue in template chain is (1rxdA)P8 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1rxdA 9 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 187 :RQNERVVIQYHYTQWP 1rxdA 53 :DTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTE 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSK T0305 283 :QYIFIHDALLEAILG 1rxdA 144 :QLLYLEKYRPKMRLR Number of specific fragments extracted= 6 number of extra gaps= 0 total=2544 Number of alignments=326 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)Y86 because first residue in template chain is (1rxdA)P8 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1rxdA 9 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 175 :KVKKGQ 1rxdA 53 :DTTLVE T0305 187 :RQN 1rxdA 59 :KEG T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEE 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSKQ T0305 292 :LEAILG 1rxdA 145 :LLYLEK Number of specific fragments extracted= 8 number of extra gaps= 0 total=2552 Number of alignments=327 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)R65 because first residue in template chain is (1rxdA)P8 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 66 :VKLR 1rxdA 9 :VEVT T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1rxdA 13 :YKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 175 :KVKKGQK 1rxdA 53 :DTTLVEK T0305 187 :RQ 1rxdA 60 :EG T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLV 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAF T0305 280 :TEEQ 1rxdA 141 :NSKQ T0305 292 :LEAILG 1rxdA 145 :LLYLEK Number of specific fragments extracted= 10 number of extra gaps= 0 total=2562 Number of alignments=328 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 145 :SEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNER 1rxdA 10 :EVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTL T0305 192 :VVIQYHYTQWP 1rxdA 58 :EKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRS 1rxdA 73 :APPSNQIVDDWLSLV T0305 221 :SAARMPETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 89 :IKFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIF 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSKQLLYL Number of specific fragments extracted= 5 number of extra gaps= 0 total=2567 Number of alignments=329 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITN 1rxdA 17 :RFLITHNPTNATLNKFIEELKKYGVTTIVRVCE T0305 185 :KGRQNER 1rxdA 50 :ATYDTTL T0305 192 :VVIQYHYTQWP 1rxdA 58 :EKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQY 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSKQLL Number of specific fragments extracted= 6 number of extra gaps= 0 total=2573 Number of alignments=330 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1rxdA 9 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 175 :KVKKGQ 1rxdA 53 :DTTLVE T0305 187 :RQN 1rxdA 59 :KEG T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEE 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSKQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=2580 Number of alignments=331 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 92 :KAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1rxdA 14 :KNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 175 :KVKKGQK 1rxdA 53 :DTTLVEK T0305 187 :RQ 1rxdA 60 :EG T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLV 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAF T0305 280 :TEEQYIFI 1rxdA 141 :NSKQLLYL Number of specific fragments extracted= 8 number of extra gaps= 0 total=2588 Number of alignments=332 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)Y86 because first residue in template chain is (1rxdA)P8 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1rxdA 9 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEA T0305 185 :KGRQNERVVIQYHYTQWP 1rxdA 51 :TYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRF Number of specific fragments extracted= 5 number of extra gaps= 0 total=2593 Number of alignments=333 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)Y86 because first residue in template chain is (1rxdA)P8 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1rxdA 9 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 186 :GRQNERVVIQYHYTQWP 1rxdA 52 :YDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRF Number of specific fragments extracted= 5 number of extra gaps= 0 total=2598 Number of alignments=334 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)R65 because first residue in template chain is (1rxdA)P8 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 66 :VKLR 1rxdA 9 :VEVT T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1rxdA 13 :YKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 140 :WPT 1rxdA 53 :DTT T0305 143 :EN 1rxdA 60 :EG T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLVQTEE 1rxdA 121 :GGMKYEDAVQFIRQKRRGAFNSKQ T0305 292 :LEAILG 1rxdA 145 :LLYLEK Number of specific fragments extracted= 9 number of extra gaps= 0 total=2607 Number of alignments=335 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)H63 because first residue in template chain is (1rxdA)P8 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 64 :SRVKLR 1rxdA 9 :VEVTYK T0305 93 :AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1rxdA 15 :NMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLV 1rxdA 121 :GGMKYEDAVQFIRQKRRGAF T0305 280 :TEEQYIFI 1rxdA 141 :NSKQLLYL Number of specific fragments extracted= 7 number of extra gaps= 0 total=2614 Number of alignments=336 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1rxdA 9 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEA T0305 185 :KGRQNERVVIQYHYTQWP 1rxdA 51 :TYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEE 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSKQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=2619 Number of alignments=337 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1rxdA 10 :EVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 186 :GRQNERVVIQYHYTQWP 1rxdA 52 :YDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEE 1rxdA 120 :EGGMKYEDAVQFIRQKRRGAFNSKQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=2624 Number of alignments=338 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1rxdA 10 :EVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 140 :WPT 1rxdA 53 :DTT T0305 143 :EN 1rxdA 60 :EG T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLVQTEE 1rxdA 121 :GGMKYEDAVQFIRQKRRGAFNSKQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=2631 Number of alignments=339 # 1rxdA read from 1rxdA/merged-a2m # found chain 1rxdA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rxdA)G72 T0305 65 :RVKLR 1rxdA 10 :EVTYK T0305 93 :AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1rxdA 15 :NMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 196 :YHYTQWP 1rxdA 62 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1rxdA 73 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1rxdA 94 :EPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLV 1rxdA 121 :GGMKYEDAVQFIRQKRRGAF T0305 280 :TEEQYIFI 1rxdA 141 :NSKQLLYL Number of specific fragments extracted= 7 number of extra gaps= 0 total=2638 Number of alignments=340 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yfoA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 1yfoA/merged-a2m # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTA 1yfoA 210 :PPLPVDKLEEEINRRMADDNKLFREEFNALPACPI T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 245 :QATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 4 number of extra gaps= 0 total=2642 Number of alignments=341 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTA 1yfoA 210 :PPLPVDKLEEEINRRMADDNKLFREEFNALPACPI T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 245 :QATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 4 number of extra gaps= 0 total=2646 Number of alignments=342 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQRCTA 1yfoA 213 :PVDKLEEEINRRMADDNKLFREEFNALPACPI T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 245 :QATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLE Number of specific fragments extracted= 4 number of extra gaps= 0 total=2650 Number of alignments=343 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQRCTA 1yfoA 214 :VDKLEEEINRRMADDNKLFREEFNALPACPI T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 245 :QATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEH Number of specific fragments extracted= 4 number of extra gaps= 0 total=2654 Number of alignments=344 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 12 :IGELYSNNQH 1yfoA 217 :LEEEINRRMA T0305 22 :GFSEDFEEV 1yfoA 231 :LFREEFNAL T0305 33 :CTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRP 1yfoA 240 :PACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLTP T0305 79 :SDYINANYVDG 1yfoA 284 :SDYINASFING T0305 93 :AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1yfoA 298 :KNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 349 :GCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSS 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVK T0305 222 :AARM 1yfoA 422 :NPQY T0305 228 :TGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1yfoA 426 :AGAIVVHCSAGVGRTGTFVVIDAMLDMMH T0305 257 :D 1yfoA 457 :R T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 458 :KVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 11 number of extra gaps= 0 total=2665 Number of alignments=345 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 11 :HIGELYSNNQH 1yfoA 216 :KLEEEINRRMA T0305 22 :GFSEDFEEV 1yfoA 231 :LFREEFNAL T0305 33 :CTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRP 1yfoA 240 :PACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLTP T0305 79 :SDYINANYVDG 1yfoA 284 :SDYINASFING T0305 93 :AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1yfoA 298 :KNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPD T0305 144 :NSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 349 :GCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSS 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVK T0305 222 :AARM 1yfoA 422 :NPQY T0305 228 :TGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1yfoA 426 :AGAIVVHCSAGVGRTGTFVVIDAMLDMMH T0305 257 :D 1yfoA 457 :R T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1yfoA 458 :KVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHY Number of specific fragments extracted= 11 number of extra gaps= 0 total=2676 Number of alignments=346 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)Q180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 12 :IGELYSNNQHGFSEDFEEVQRC 1yfoA 221 :INRRMADDNKLFREEFNALPAC T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 243 :PIQATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYL Number of specific fragments extracted= 4 number of extra gaps= 0 total=2680 Number of alignments=347 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)Q180 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 11 :HIGELYSNNQHGFSEDFEEVQRCTA 1yfoA 220 :EINRRMADDNKLFREEFNALPACPI T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGK 1yfoA 245 :QATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGV T0305 77 :KHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 282 :PDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYL Number of specific fragments extracted= 4 number of extra gaps= 0 total=2684 Number of alignments=348 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADM 1yfoA 210 :PPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQA T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 247 :TCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 4 number of extra gaps= 0 total=2688 Number of alignments=349 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADM 1yfoA 210 :PPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQA T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 247 :TCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 4 number of extra gaps= 0 total=2692 Number of alignments=350 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 1 :YFQS 1yfoA 208 :KYPP T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQRCTADM 1yfoA 214 :VDKLEEEINRRMADDNKLFREEFNALPACPIQA T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 247 :TCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 5 number of extra gaps= 0 total=2697 Number of alignments=351 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 1 :YFQS 1yfoA 208 :KYPP T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQRCTADM 1yfoA 214 :VDKLEEEINRRMADDNKLFREEFNALPACPIQA T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 247 :TCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 5 number of extra gaps= 0 total=2702 Number of alignments=352 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADM 1yfoA 210 :PPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQA T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 247 :TCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYL Number of specific fragments extracted= 4 number of extra gaps= 0 total=2706 Number of alignments=353 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADM 1yfoA 212 :LPVDKLEEEINRRMADDNKLFREEFNALPACPIQA T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 247 :TCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYL Number of specific fragments extracted= 4 number of extra gaps= 0 total=2710 Number of alignments=354 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADM 1yfoA 213 :PVDKLEEEINRRMADDNKLFREEFNALPACPIQA T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 247 :TCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 4 number of extra gaps= 0 total=2714 Number of alignments=355 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 3 :Q 1yfoA 210 :P T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADM 1yfoA 213 :PVDKLEEEINRRMADDNKLFREEFNALPACPIQA T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 247 :TCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 5 number of extra gaps= 0 total=2719 Number of alignments=356 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQ 1yfoA 210 :PPLPVDKLEEEINRRMADDNKLFREEFNALP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 241 :ACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 4 number of extra gaps= 0 total=2723 Number of alignments=357 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQ 1yfoA 210 :PPLPVDKLEEEINRRMADDNKLFREEFNALP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 241 :ACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 4 number of extra gaps= 0 total=2727 Number of alignments=358 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 1 :Y 1yfoA 208 :K T0305 2 :FQSMKQFVKHIGELYSNNQHGFSEDFEEVQ 1yfoA 211 :PLPVDKLEEEINRRMADDNKLFREEFNALP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 241 :ACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 5 number of extra gaps= 0 total=2732 Number of alignments=359 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 1 :Y 1yfoA 208 :K T0305 2 :FQSMKQFVKHIGELYSNNQHGFSEDFEEVQ 1yfoA 211 :PLPVDKLEEEINRRMADDNKLFREEFNALP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 241 :ACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 5 number of extra gaps= 0 total=2737 Number of alignments=360 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQ 1yfoA 213 :PVDKLEEEINRRMADDNKLFREEFNALP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 241 :ACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYL Number of specific fragments extracted= 4 number of extra gaps= 0 total=2741 Number of alignments=361 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 4 :SMKQFVKHIGELYSNNQHGFSEDFEEVQ 1yfoA 213 :PVDKLEEEINRRMADDNKLFREEFNALP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 241 :ACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHY Number of specific fragments extracted= 4 number of extra gaps= 0 total=2745 Number of alignments=362 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQ 1yfoA 210 :PPLPVDKLEEEINRRMADDNKLFREEFNALP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 241 :ACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 4 number of extra gaps= 0 total=2749 Number of alignments=363 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 1 :YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQ 1yfoA 210 :PPLPVDKLEEEINRRMADDNKLFREEFNALP T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1yfoA 241 :ACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPD T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 284 :SDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 4 number of extra gaps= 0 total=2753 Number of alignments=364 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yfoA 210 :PPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 277 :PVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 3 number of extra gaps= 0 total=2756 Number of alignments=365 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 2 :FQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yfoA 209 :YPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 277 :PVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 3 number of extra gaps= 0 total=2759 Number of alignments=366 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 2 :FQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yfoA 209 :YPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 277 :PVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 3 number of extra gaps= 0 total=2762 Number of alignments=367 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 6 :KQFVKHIGELYSNNQHGFSEDFEEVQR 1yfoA 211 :PLPVDKLEEEINRRMADDNKLFREEFN T0305 33 :CTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yfoA 240 :PACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 277 :PVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY Number of specific fragments extracted= 4 number of extra gaps= 0 total=2766 Number of alignments=368 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yfoA 229 :NKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 277 :PVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLE Number of specific fragments extracted= 3 number of extra gaps= 0 total=2769 Number of alignments=369 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yfoA 224 :RMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 277 :PVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHY Number of specific fragments extracted= 3 number of extra gaps= 0 total=2772 Number of alignments=370 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 3 :QSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yfoA 210 :PPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 277 :PVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYL Number of specific fragments extracted= 3 number of extra gaps= 0 total=2775 Number of alignments=371 # 1yfoA read from 1yfoA/merged-a2m # found chain 1yfoA in template set Warning: unaligning (T0305)N173 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yfoA)Q388 Warning: unaligning (T0305)E190 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yfoA)Q388 T0305 7 :QFVKHIGELY 1yfoA 216 :KLEEEINRRM T0305 21 :HGFSEDFEEVQR 1yfoA 226 :ADDNKLFREEFN T0305 33 :CTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yfoA 240 :PACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1yfoA 277 :PVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ T0305 191 :RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1yfoA 389 :RLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYL Number of specific fragments extracted= 5 number of extra gaps= 0 total=2780 Number of alignments=372 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fprA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1fprA expands to /projects/compbio/data/pdb/1fpr.pdb.gz 1fprA:# T0305 read from 1fprA/merged-a2m # 1fprA read from 1fprA/merged-a2m # adding 1fprA to template set # found chain 1fprA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1fprA)G245 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRP 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQG T0305 79 :SDYINANYVDG 1fprA 301 :SDYINANYIKN T0305 93 :AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1fprA 320 :AKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVK 1fprA 371 :GMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNG T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSS 1fprA 407 :LIREIWHYQYLSWPDHGVPSEPGGVLSFLDQIN T0305 222 :AARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1fprA 442 :QESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENIS T0305 257 :DKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1fprA 480 :LDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET Number of specific fragments extracted= 7 number of extra gaps= 0 total=2787 Number of alignments=373 # 1fprA read from 1fprA/merged-a2m # found chain 1fprA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1fprA)G245 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRP 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQG T0305 79 :SDYINANYVDG 1fprA 301 :SDYINANYIKN T0305 93 :AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1fprA 320 :AKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVK 1fprA 371 :GMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNG T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSS 1fprA 407 :LIREIWHYQYLSWPDHGVPSEPGGVLSFLDQIN T0305 222 :AARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1fprA 442 :QESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENIS T0305 257 :DKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1fprA 480 :LDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFI Number of specific fragments extracted= 7 number of extra gaps= 0 total=2794 Number of alignments=374 # 1fprA read from 1fprA/merged-a2m # found chain 1fprA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1fprA)G245 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRP 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQG T0305 71 :LPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEE 1fprA 298 :IPGSDYINANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQR T0305 148 :YGNIIVTLKSTKIHACYTVRRF 1fprA 376 :YGPYSVTNCGEHDTTEYKLRTL T0305 180 :QKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRR 1fprA 398 :QVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQ T0305 220 :SSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKS 1fprA 440 :QRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKG T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1fprA 483 :DIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFI Number of specific fragments extracted= 6 number of extra gaps= 0 total=2800 Number of alignments=375 # 1fprA read from 1fprA/merged-a2m # found chain 1fprA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1fprA)G245 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQ T0305 73 :GKDS 1fprA 293 :GRDS T0305 77 :KHSDYINANYVDG 1fprA 299 :PGSDYINANYIKN T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTEN 1fprA 317 :DENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVG T0305 145 :SEEYGNIIVTLKSTKIHACYTVR 1fprA 373 :QRAYGPYSVTNCGEHDTTEYKLR T0305 173 :NTKVKKGQKG 1fprA 396 :TLQVSPLDNG T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRR 1fprA 406 :DLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQ T0305 220 :SSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKS 1fprA 440 :QRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKG T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1fprA 483 :DIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQF Number of specific fragments extracted= 9 number of extra gaps= 0 total=2809 Number of alignments=376 # 1fprA read from 1fprA/merged-a2m # found chain 1fprA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1fprA)G245 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRD T0305 73 :GKDS 1fprA 297 :NIPG T0305 79 :SDYINANYV 1fprA 301 :SDYINANYI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEE 1fprA 315 :GPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQR T0305 148 :YGNIIVTLKSTKIHACYTVRRFSIRNT 1fprA 376 :YGPYSVTNCGEHDTTEYKLRTLQVSPL T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1fprA 403 :DNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1fprA 446 :PHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGL T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1fprA 484 :IDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET Number of specific fragments extracted= 8 number of extra gaps= 0 total=2817 Number of alignments=377 # 1fprA read from 1fprA/merged-a2m # found chain 1fprA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1fprA)G245 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRD T0305 73 :GKDS 1fprA 297 :NIPG T0305 79 :SDYINANYV 1fprA 301 :SDYINANYI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEE 1fprA 315 :GPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQR T0305 148 :YGNIIVTLKSTKIHACYTVRRFSIRNT 1fprA 376 :YGPYSVTNCGEHDTTEYKLRTLQVSPL T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1fprA 403 :DNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1fprA 446 :PHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGL T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1fprA 484 :IDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET Number of specific fragments extracted= 8 number of extra gaps= 0 total=2825 Number of alignments=378 # 1fprA read from 1fprA/merged-a2m # found chain 1fprA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1fprA)G245 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRD T0305 73 :GKDS 1fprA 297 :NIPG T0305 79 :SDYINANYV 1fprA 301 :SDYINANYI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEE 1fprA 315 :GPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQR T0305 148 :YGNIIVTLKSTKIHACYTVRRFSIRNT 1fprA 376 :YGPYSVTNCGEHDTTEYKLRTLQVSPL T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1fprA 403 :DNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1fprA 446 :PHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGL T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1fprA 484 :IDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIE Number of specific fragments extracted= 8 number of extra gaps= 0 total=2833 Number of alignments=379 # 1fprA read from 1fprA/merged-a2m # found chain 1fprA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1fprA)G245 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRD T0305 73 :GKDS 1fprA 297 :NIPG T0305 79 :SDYINANYV 1fprA 301 :SDYINANYI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEE 1fprA 315 :GPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQR T0305 148 :YGNIIVTLKSTKIHACYTVRRFSIRNT 1fprA 376 :YGPYSVTNCGEHDTTEYKLRTLQVSPL T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1fprA 403 :DNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1fprA 446 :PHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGL T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1fprA 484 :IDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIE Number of specific fragments extracted= 8 number of extra gaps= 0 total=2841 Number of alignments=380 # 1fprA read from 1fprA/merged-a2m # found chain 1fprA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1fprA)G245 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRD T0305 73 :GKDS 1fprA 297 :NIPG T0305 79 :SDYINANYV 1fprA 301 :SDYINANYI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1fprA 315 :GPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 1fprA 371 :GMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDN T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1fprA 405 :GDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1fprA 446 :PHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGL T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1fprA 484 :IDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET Number of specific fragments extracted= 8 number of extra gaps= 0 total=2849 Number of alignments=381 # 1fprA read from 1fprA/merged-a2m # found chain 1fprA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1fprA)G245 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRD T0305 73 :GKDS 1fprA 297 :NIPG T0305 79 :SDYINANYV 1fprA 301 :SDYINANYI T0305 89 :G 1fprA 315 :G T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1fprA 317 :DENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 1fprA 371 :GMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDN T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1fprA 405 :GDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1fprA 446 :PHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGL T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1fprA 484 :IDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET Number of specific fragments extracted= 9 number of extra gaps= 0 total=2858 Number of alignments=382 # 1fprA read from 1fprA/merged-a2m # found chain 1fprA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1fprA)G245 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRD T0305 73 :GKDS 1fprA 297 :NIPG T0305 79 :SDYINANYV 1fprA 301 :SDYINANYI T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1fprA 315 :GPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 1fprA 371 :GMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDN T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1fprA 405 :GDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1fprA 446 :PHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGL T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1fprA 484 :IDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIE Number of specific fragments extracted= 8 number of extra gaps= 0 total=2866 Number of alignments=383 # 1fprA read from 1fprA/merged-a2m # found chain 1fprA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1fprA)G245 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRD T0305 73 :GKDS 1fprA 297 :NIPG T0305 79 :SDYINANYV 1fprA 301 :SDYINANYI T0305 89 :G 1fprA 315 :G T0305 90 :YNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1fprA 317 :DENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKV 1fprA 371 :GMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDN T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1fprA 405 :GDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1fprA 446 :PHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGL T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1fprA 484 :IDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIE Number of specific fragments extracted= 9 number of extra gaps= 0 total=2875 Number of alignments=384 # 1fprA read from 1fprA/merged-a2m # found chain 1fprA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1fprA)G245 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQ T0305 71 :LPGKDSKHSDYINANYVDGY 1fprA 293 :GRDSNIPGSDYINANYIKNQ T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1fprA 318 :ENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1fprA 371 :GMQRAYGPYSVTNCGEHDTTEYKLRTLQVSP T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1fprA 402 :LDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1fprA 446 :PHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGL T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1fprA 484 :IDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET Number of specific fragments extracted= 7 number of extra gaps= 0 total=2882 Number of alignments=385 # 1fprA read from 1fprA/merged-a2m # found chain 1fprA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1fprA)G245 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQ T0305 71 :LPGKDSKHSDYINANYVD 1fprA 293 :GRDSNIPGSDYINANYIK T0305 89 :GY 1fprA 315 :GP T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1fprA 318 :ENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1fprA 371 :GMQRAYGPYSVTNCGEHDTTEYKLRTLQVSP T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1fprA 402 :LDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1fprA 446 :PHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGL T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1fprA 484 :IDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET Number of specific fragments extracted= 8 number of extra gaps= 0 total=2890 Number of alignments=386 # 1fprA read from 1fprA/merged-a2m # found chain 1fprA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1fprA)G245 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQ T0305 71 :LPGKDSKHSDYINANYVDGY 1fprA 293 :GRDSNIPGSDYINANYIKNQ T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1fprA 318 :ENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1fprA 371 :GMQRAYGPYSVTNCGEHDTTEYKLRTLQVSP T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1fprA 402 :LDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1fprA 446 :PHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGL T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1fprA 484 :IDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFI Number of specific fragments extracted= 7 number of extra gaps= 0 total=2897 Number of alignments=387 # 1fprA read from 1fprA/merged-a2m # found chain 1fprA in template set T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1fprA 246 :FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQ T0305 71 :LPGKDSKHSDYINANYVD 1fprA 293 :GRDSNIPGSDYINANYIK T0305 89 :GY 1fprA 315 :GP T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1fprA 318 :ENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPE T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1fprA 371 :GMQRAYGPYSVTNCGEHDTTEYKLRTLQVSP T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1fprA 402 :LDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1fprA 446 :PHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGL T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1fprA 484 :IDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFI Number of specific fragments extracted= 8 number of extra gaps= 0 total=2905 Number of alignments=388 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1u24A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1u24A expands to /projects/compbio/data/pdb/1u24.pdb.gz 1u24A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0305 read from 1u24A/merged-a2m # 1u24A read from 1u24A/merged-a2m # adding 1u24A to template set # found chain 1u24A in template set T0305 11 :HIGELYSNNQHGFSEDFEEVQRCTADMN 1u24A 24 :VTEPVGSYARAERPQDFEGFVWRLDNDG T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLRPLP 1u24A 52 :KEALPRNFRTSADALRAPEKKFHLDAAYVP T0305 75 :DSKHSDYINANYVDGY 1u24A 82 :SREGMDALHISGSSAF T0305 92 :KAKAYIATQGPL 1u24A 98 :TPAQLKNVAAKL T0305 104 :KSTFEDFWRMIWEQNTGIIV 1u24A 111 :EKTAGPIYDVDLRQESHGYL T0305 124 :MITNLVEKGRR 1u24A 134 :PVSWYGERDWA T0305 135 :KCDQYWPTENS 1u24A 148 :KSQHEALADER T0305 146 :EEYGNIIVTLKSTKIHACY 1u24A 164 :ALHKTVYIAPLGKHKLPEG T0305 166 :VRRFSIRN 1u24A 183 :GEVRRVQK T0305 176 :VKKGQKGN 1u24A 191 :VQTEQEVA T0305 190 :ERVVIQYHYTQWPDMGVPE 1u24A 199 :EAAGMRYFRIAATDHVWPT T0305 210 :ALPVLTFVRRSSAARMP 1u24A 218 :PENIDRFLAFYRTLPQD T0305 229 :GPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1u24A 235 :AWLHFHCEAGVGRTTAFMVMTDMLKNPSVS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALL 1u24A 265 :LKDILYRQHEIGGFYYGEFPIKTKDKDSWKTKY T0305 296 :LG 1u24A 298 :YR Number of specific fragments extracted= 15 number of extra gaps= 0 total=2920 Number of alignments=389 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 11 :HIGELYSNNQHGFSEDFEEVQRCTADMN 1u24A 24 :VTEPVGSYARAERPQDFEGFVWRLDNDG T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLRPLP 1u24A 52 :KEALPRNFRTSADALRAPEKKFHLDAAYVP T0305 75 :DSKHSDYINANYVDGY 1u24A 82 :SREGMDALHISGSSAF T0305 92 :KAKAYIATQGPL 1u24A 98 :TPAQLKNVAAKL T0305 104 :KSTFEDFWRMIWEQNTGIIV 1u24A 111 :EKTAGPIYDVDLRQESHGYL T0305 124 :MITNLVEKGRR 1u24A 134 :PVSWYGERDWA T0305 135 :KCDQYWPTENS 1u24A 148 :KSQHEALADER T0305 146 :EEYGNIIVTLKSTKIHACY 1u24A 164 :ALHKTVYIAPLGKHKLPEG T0305 166 :VRRFSIRN 1u24A 183 :GEVRRVQK T0305 176 :VKKGQKGN 1u24A 191 :VQTEQEVA T0305 190 :ERVVIQYHYTQWPDMGVPE 1u24A 199 :EAAGMRYFRIAATDHVWPT T0305 210 :ALPVLTFVRRSSAARMP 1u24A 218 :PENIDRFLAFYRTLPQD T0305 229 :GPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1u24A 235 :AWLHFHCEAGVGRTTAFMVMTDMLKNPSVS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALL 1u24A 265 :LKDILYRQHEIGGFYYGEFPIKTKDKDSWKTKY T0305 296 :LG 1u24A 298 :YR Number of specific fragments extracted= 15 number of extra gaps= 0 total=2935 Number of alignments=390 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 17 :SNNQHGFSEDFEEVQRCTADMN 1u24A 30 :SYARAERPQDFEGFVWRLDNDG T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLRPLP 1u24A 52 :KEALPRNFRTSADALRAPEKKFHLDAAYVP T0305 75 :DSKHSDYINANYVDGY 1u24A 82 :SREGMDALHISGSSAF T0305 92 :KAKAYIATQGPL 1u24A 98 :TPAQLKNVAAKL T0305 104 :KSTFEDFWRMIWEQNTGIIV 1u24A 111 :EKTAGPIYDVDLRQESHGYL T0305 124 :MITNLVEKGRR 1u24A 134 :PVSWYGERDWA T0305 135 :KCDQYWPTENS 1u24A 148 :KSQHEALADER T0305 146 :EEYGNIIVTLKSTKIHACY 1u24A 164 :ALHKTVYIAPLGKHKLPEG T0305 166 :VRRFSIRN 1u24A 183 :GEVRRVQK T0305 176 :VKKGQKGN 1u24A 191 :VQTEQEVA T0305 190 :ERVVIQYHYTQWPDMGVPE 1u24A 199 :EAAGMRYFRIAATDHVWPT T0305 210 :ALPVLTFVRRSSAARMP 1u24A 218 :PENIDRFLAFYRTLPQD T0305 229 :GPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1u24A 235 :AWLHFHCEAGVGRTTAFMVMTDMLKNPSVS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALL 1u24A 265 :LKDILYRQHEIGGFYYGEFPIKTKDKDSWKTKY Number of specific fragments extracted= 14 number of extra gaps= 0 total=2949 Number of alignments=391 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 17 :SNNQHGFSEDFEEVQRCTADMN 1u24A 30 :SYARAERPQDFEGFVWRLDNDG T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLRPLP 1u24A 52 :KEALPRNFRTSADALRAPEKKFHLDAAYVP T0305 75 :DSKHSDYINANYVDGY 1u24A 82 :SREGMDALHISGSSAF T0305 92 :KAKAYIATQGPL 1u24A 98 :TPAQLKNVAAKL T0305 104 :KSTFEDFWRMIWEQNTGIIV 1u24A 111 :EKTAGPIYDVDLRQESHGYL T0305 124 :MITNLVEKGRR 1u24A 134 :PVSWYGERDWA T0305 135 :KCDQYWPTENS 1u24A 148 :KSQHEALADER T0305 146 :EEYGNIIVTLKSTKIHACY 1u24A 164 :ALHKTVYIAPLGKHKLPEG T0305 166 :VRRFSIRN 1u24A 183 :GEVRRVQK T0305 176 :VKKGQKGN 1u24A 191 :VQTEQEVA T0305 190 :ERVVIQYHYTQWPDMGVPE 1u24A 199 :EAAGMRYFRIAATDHVWPT T0305 210 :ALPVLTFVRRSSAARMP 1u24A 218 :PENIDRFLAFYRTLPQD T0305 229 :GPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1u24A 235 :AWLHFHCEAGVGRTTAFMVMTDMLKNPSVS T0305 260 :TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALL 1u24A 265 :LKDILYRQHEIGGFYYGEFPIKTKDKDSWKTKY Number of specific fragments extracted= 14 number of extra gaps= 0 total=2963 Number of alignments=392 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 1 :YF 1u24A 23 :TV T0305 15 :LYSNNQHGFSEDFEEVQRCTADMN 1u24A 25 :TEPVGSYARAERPQDFEGFVWRLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKH 1u24A 49 :NDGKEALPRNFRTSADALRAPEKKFHLDAAYVPSREGMD T0305 79 :SDYINANYVD 1u24A 94 :SSAFTPAQLK T0305 89 :GYNKAKAYIAT 1u24A 111 :EKTAGPIYDVD T0305 100 :QGPL 1u24A 124 :QESH T0305 105 :STFEDFWRMIWEQ 1u24A 128 :GYLDGIPVSWYGE T0305 118 :NTGIIVMITN 1u24A 142 :DWANLGKSQH T0305 128 :LVEKGRRKCD 1u24A 155 :ADERHRLHAA T0305 147 :EYGNIIVTLKSTKIHACY 1u24A 165 :LHKTVYIAPLGKHKLPEG T0305 165 :TVRRFSIRNTKVKK 1u24A 185 :VRRVQKVQTEQEVA T0305 190 :ERVVIQYHYTQWPDMGVP 1u24A 199 :EAAGMRYFRIAATDHVWP T0305 209 :YALPVLTFVRRSSAA 1u24A 217 :TPENIDRFLAFYRTL T0305 225 :MP 1u24A 232 :PQ T0305 228 :TGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1u24A 234 :DAWLHFHCEAGVGRTTAFMVMTDMLKNPS T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 1u24A 263 :VSLKDILYRQHEIGGFYYGEFPIKTKDKDSWKTK T0305 294 :AILG 1u24A 297 :YYRE Number of specific fragments extracted= 17 number of extra gaps= 0 total=2980 Number of alignments=393 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 15 :LYSNNQHGFSEDFEEVQRCTADMN 1u24A 25 :TEPVGSYARAERPQDFEGFVWRLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSK 1u24A 49 :NDGKEALPRNFRTSADALRAPEKKFHLDAAYVPSREGM T0305 78 :HSDYINANYVD 1u24A 93 :GSSAFTPAQLK T0305 89 :GYNKAKAYIAT 1u24A 111 :EKTAGPIYDVD T0305 100 :QGPL 1u24A 124 :QESH T0305 105 :STFEDFWRMIWEQ 1u24A 128 :GYLDGIPVSWYGE T0305 118 :NTGIIVMITN 1u24A 142 :DWANLGKSQH T0305 128 :LVEKGRRKCD 1u24A 155 :ADERHRLHAA T0305 147 :EYGNIIVTLKSTKIHACY 1u24A 165 :LHKTVYIAPLGKHKLPEG T0305 165 :TVRRFSIRNTKVKK 1u24A 185 :VRRVQKVQTEQEVA T0305 190 :ERVVIQYHYTQWPDMGVP 1u24A 199 :EAAGMRYFRIAATDHVWP T0305 209 :YALPVLTFVRRSSAA 1u24A 217 :TPENIDRFLAFYRTL T0305 225 :MP 1u24A 232 :PQ T0305 228 :TGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1u24A 234 :DAWLHFHCEAGVGRTTAFMVMTDMLKNPS T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1u24A 263 :VSLKDILYRQHEIGGFYYGEFPIKTKDKDSWKTKYY T0305 296 :LG 1u24A 299 :RE Number of specific fragments extracted= 16 number of extra gaps= 0 total=2996 Number of alignments=394 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 19 :NQHGFSEDFEEVQRCTADMN 1u24A 29 :GSYARAERPQDFEGFVWRLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKH 1u24A 49 :NDGKEALPRNFRTSADALRAPEKKFHLDAAYVPSREGMD T0305 79 :SDYINANYVD 1u24A 94 :SSAFTPAQLK T0305 89 :GYNKAKAYIAT 1u24A 111 :EKTAGPIYDVD T0305 100 :QGPL 1u24A 124 :QESH T0305 105 :STFEDFWRMIWEQ 1u24A 128 :GYLDGIPVSWYGE T0305 118 :NTGIIVMITN 1u24A 142 :DWANLGKSQH T0305 128 :LVEKGRRKCD 1u24A 155 :ADERHRLHAA T0305 147 :EYGNIIVTLKSTKIHACY 1u24A 165 :LHKTVYIAPLGKHKLPEG T0305 165 :TVRRFSIRNTKVKK 1u24A 185 :VRRVQKVQTEQEVA T0305 190 :ERVVIQYHYTQWPDMGVP 1u24A 199 :EAAGMRYFRIAATDHVWP T0305 209 :YALPVLTFVRRSSAA 1u24A 217 :TPENIDRFLAFYRTL T0305 225 :MP 1u24A 232 :PQ T0305 228 :TGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1u24A 234 :DAWLHFHCEAGVGRTTAFMVMTDMLKNPS T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1u24A 263 :VSLKDILYRQHEIGGFYYGEFPIKTKDKDSWKTKYY Number of specific fragments extracted= 15 number of extra gaps= 0 total=3011 Number of alignments=395 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 19 :NQHGFSEDFEEVQRCTADMN 1u24A 29 :GSYARAERPQDFEGFVWRLD T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSK 1u24A 49 :NDGKEALPRNFRTSADALRAPEKKFHLDAAYVPSREGM T0305 78 :HSDYINANYVD 1u24A 93 :GSSAFTPAQLK T0305 89 :GYNKAKAYIAT 1u24A 111 :EKTAGPIYDVD T0305 100 :QGPL 1u24A 124 :QESH T0305 105 :STFEDFWRMIWEQ 1u24A 128 :GYLDGIPVSWYGE T0305 118 :NTGIIVMITN 1u24A 142 :DWANLGKSQH T0305 128 :LVEKGRRKCD 1u24A 155 :ADERHRLHAA T0305 147 :EYGNIIVTLKSTKIHACY 1u24A 165 :LHKTVYIAPLGKHKLPEG T0305 165 :TVRRFSIRNTKVKK 1u24A 185 :VRRVQKVQTEQEVA T0305 190 :ERVVIQYHYTQWPDMGVP 1u24A 199 :EAAGMRYFRIAATDHVWP T0305 209 :YALPVLTFVRRSSAA 1u24A 217 :TPENIDRFLAFYRTL T0305 225 :MP 1u24A 232 :PQ T0305 228 :TGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1u24A 234 :DAWLHFHCEAGVGRTTAFMVMTDMLKNPS T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1u24A 263 :VSLKDILYRQHEIGGFYYGEFPIKTKDKDSWKTKYY Number of specific fragments extracted= 15 number of extra gaps= 0 total=3026 Number of alignments=396 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set Warning: unaligning (T0305)D26 because first residue in template chain is (1u24A)T23 T0305 27 :FEEVQRCTADMNITAEHSN 1u24A 24 :VTEPVGSYARAERPQDFEG T0305 46 :HPENKHKNRYINILAYDHSRVKL 1u24A 46 :RLDNDGKEALPRNFRTSADALRA T0305 73 :GKDSKHSDYINANYVDGYNKAKAYIATQGP 1u24A 69 :PEKKFHLDAAYVPSREGMDALHISGSSAFT T0305 104 :KSTFEDFWRMIWEQNTG 1u24A 99 :PAQLKNVAAKLREKTAG T0305 122 :IVMITNLVEKGRRKCDQYWPTENSEEYGNII 1u24A 116 :PIYDVDLRQESHGYLDGIPVSWYGERDWANL T0305 153 :VTLKSTKIHACYTVRRFSIRNTKVKKGQKG 1u24A 172 :APLGKHKLPEGGEVRRVQKVQTEQEVAEAA T0305 193 :VIQYHYTQWPDMGVP 1u24A 202 :GMRYFRIAATDHVWP T0305 208 :EYALPVLTFVR 1u24A 219 :ENIDRFLAFYR T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVI 1u24A 230 :TLPQDAWLHFHCEAGVGRTTAFMVM T0305 249 :DSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIH 1u24A 267 :DILYRQHEIGGFYYGEFPIKTKDKDSWKTKYYREKIVMIE T0305 289 :DAL 1u24A 318 :DGY Number of specific fragments extracted= 11 number of extra gaps= 0 total=3037 Number of alignments=397 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set Warning: unaligning (T0305)D26 because first residue in template chain is (1u24A)T23 T0305 27 :FEEVQRCTADMNITAEHS 1u24A 24 :VTEPVGSYARAERPQDFE T0305 45 :NHPENKHKNRYINILAYDHSRVKL 1u24A 45 :WRLDNDGKEALPRNFRTSADALRA T0305 73 :GKDSKHSDYINANYVDGYNKAKAYIATQGP 1u24A 69 :PEKKFHLDAAYVPSREGMDALHISGSSAFT T0305 104 :KSTFEDFWRMIWEQNTG 1u24A 99 :PAQLKNVAAKLREKTAG T0305 122 :IVMITNLVEKGRRKCDQYWPTENSEEYGNII 1u24A 116 :PIYDVDLRQESHGYLDGIPVSWYGERDWANL T0305 153 :VTLKSTKIHACYTVRRFSIRNTKVKKGQKG 1u24A 172 :APLGKHKLPEGGEVRRVQKVQTEQEVAEAA T0305 193 :VIQYHYTQWPDMGVP 1u24A 202 :GMRYFRIAATDHVWP T0305 208 :EYALPVLTFVR 1u24A 219 :ENIDRFLAFYR T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVI 1u24A 230 :TLPQDAWLHFHCEAGVGRTTAFMVM T0305 249 :DSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHD 1u24A 267 :DILYRQHEIGGFYYGEFPIKTKDKDSWKTKYYREKIVMIEQ T0305 290 :AL 1u24A 319 :GY Number of specific fragments extracted= 11 number of extra gaps= 0 total=3048 Number of alignments=398 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 48 :ENKHKNRYINILAYDHSRVKL 1u24A 48 :DNDGKEALPRNFRTSADALRA T0305 73 :GKDSKHSDYINANYVDGYNKAKAYIATQGP 1u24A 69 :PEKKFHLDAAYVPSREGMDALHISGSSAFT T0305 104 :KSTFEDFWRMIWEQNTG 1u24A 99 :PAQLKNVAAKLREKTAG T0305 122 :IVMITNLVEKGRRKCDQYWPTENSEEYGNII 1u24A 116 :PIYDVDLRQESHGYLDGIPVSWYGERDWANL T0305 153 :VTLKSTKIHACYTVRRFSIRNTKVKKGQKG 1u24A 172 :APLGKHKLPEGGEVRRVQKVQTEQEVAEAA T0305 193 :VIQYHYTQWPDMGVP 1u24A 202 :GMRYFRIAATDHVWP T0305 208 :EYALPVLTFVR 1u24A 219 :ENIDRFLAFYR T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVI 1u24A 230 :TLPQDAWLHFHCEAGVGRTTAFMVM T0305 249 :DSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIH 1u24A 267 :DILYRQHEIGGFYYGEFPIKTKDKDSWKTKYYREKIVMIE Number of specific fragments extracted= 9 number of extra gaps= 0 total=3057 Number of alignments=399 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 48 :ENKHKNRYINILAYDHSRVKL 1u24A 48 :DNDGKEALPRNFRTSADALRA T0305 73 :GKDSKHSDYINANYVDGYNKAKAYIATQGP 1u24A 69 :PEKKFHLDAAYVPSREGMDALHISGSSAFT T0305 104 :KSTFEDFWRMIWEQNTG 1u24A 99 :PAQLKNVAAKLREKTAG T0305 122 :IVMITNLVEKGRRKCDQYWPTENSEEYGNII 1u24A 116 :PIYDVDLRQESHGYLDGIPVSWYGERDWANL T0305 153 :VTLKSTKIHACYTVRRFSIRNTKVKKGQKG 1u24A 172 :APLGKHKLPEGGEVRRVQKVQTEQEVAEAA T0305 193 :VIQYHYTQWPDMGVP 1u24A 202 :GMRYFRIAATDHVWP T0305 208 :EYALPVLTFVR 1u24A 219 :ENIDRFLAFYR T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVI 1u24A 230 :TLPQDAWLHFHCEAGVGRTTAFMVM T0305 249 :DSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIH 1u24A 267 :DILYRQHEIGGFYYGEFPIKTKDKDSWKTKYYREKIVMIE Number of specific fragments extracted= 9 number of extra gaps= 0 total=3066 Number of alignments=400 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQ 1u24A 231 :LPQDAWLHFHCEAGVGRTTAFMVMTDMLK Number of specific fragments extracted= 1 number of extra gaps= 0 total=3067 Number of alignments=401 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 207 :PEYALPVLTFVR 1u24A 218 :PENIDRFLAFYR T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1u24A 230 :TLPQDAWLHFHCEAGVGRTTAFMVMTDMLKN Number of specific fragments extracted= 2 number of extra gaps= 0 total=3069 Number of alignments=402 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set Warning: unaligning (T0305)T34 because first residue in template chain is (1u24A)T23 Warning: unaligning (T0305)A294 because last residue in template chain is (1u24A)L336 T0305 35 :ADMNITAEH 1u24A 24 :VTEPVGSYA T0305 74 :KDSKHSD 1u24A 33 :RAERPQD T0305 81 :YINANYVDGYN 1u24A 129 :YLDGIPVSWYG T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQ 1u24A 140 :ERDWANLGKSQHEALADERHRLHAALHKTVYIAPLGKHKLPEGGEVRRVQKVQTEQEVA T0305 209 :YALPVLTFVRRSSAARM 1u24A 199 :EAAGMRYFRIAATDHVW T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1u24A 232 :PQDAWLHFHCEAGVGRTTAFMVMTDMLKNPS T0305 257 :DKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1u24A 299 :REKIVMIEQFYRYVQENRADGYQTPWSVWLKSHPAKA Number of specific fragments extracted= 7 number of extra gaps= 0 total=3076 Number of alignments=403 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set Warning: unaligning (T0305)T34 because first residue in template chain is (1u24A)T23 T0305 35 :ADMNI 1u24A 24 :VTEPV T0305 40 :TAEHSNHP 1u24A 30 :SYARAERP T0305 121 :IIVMI 1u24A 170 :YIAPL T0305 132 :GRRKC 1u24A 175 :GKHKL T0305 141 :PTENSE 1u24A 180 :PEGGEV T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNT 1u24A 186 :RRVQKVQTEQEVAEAAGMRYFRIAAT T0305 198 :YTQWP 1u24A 212 :DHVWP T0305 206 :VPEYALPVLTFVRRS 1u24A 217 :TPENIDRFLAFYRTL T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1u24A 232 :PQDAWLHFHCEAGVGRTTAFMVMTDMLKNPS T0305 257 :DKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 1u24A 299 :REKIVMIEQFYRYVQENRADGYQTPWSVWLKSHPA Number of specific fragments extracted= 10 number of extra gaps= 0 total=3086 Number of alignments=404 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set Warning: unaligning (T0305)T34 because first residue in template chain is (1u24A)T23 T0305 35 :ADMNI 1u24A 24 :VTEPV T0305 40 :TAEHSNHPENKH 1u24A 30 :SYARAERPQDFE T0305 63 :HSRVKLR 1u24A 42 :GFVWRLD T0305 79 :S 1u24A 49 :N T0305 81 :YI 1u24A 170 :YI T0305 127 :NLVEKGR 1u24A 172 :APLGKHK T0305 140 :WPTENSEE 1u24A 179 :LPEGGEVR T0305 148 :YGNIIV 1u24A 188 :VQKVQT T0305 187 :RQNERVVIQYH 1u24A 200 :AAGMRYFRIAA T0305 202 :PDMGVP 1u24A 211 :TDHVWP T0305 209 :YALPVLTFVRRSSAA 1u24A 217 :TPENIDRFLAFYRTL T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1u24A 232 :PQDAWLHFHCEAGVGRTTAFMVMTDM T0305 255 :IK 1u24A 258 :LK T0305 263 :VLGFLKHIRTQRNYLVQTE 1u24A 305 :IEQFYRYVQENRADGYQTP T0305 291 :LLEAILG 1u24A 324 :WSVWLKS Number of specific fragments extracted= 15 number of extra gaps= 0 total=3101 Number of alignments=405 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set Warning: unaligning (T0305)T34 because first residue in template chain is (1u24A)T23 T0305 35 :ADMNI 1u24A 24 :VTEPV T0305 40 :TAEHSNHPENKHK 1u24A 30 :SYARAERPQDFEG T0305 64 :SRVKLR 1u24A 43 :FVWRLD T0305 71 :LPGKDS 1u24A 49 :NDGKEA T0305 81 :YINANY 1u24A 90 :HISGSS T0305 101 :GPLKSTFEDFWRMIWEQ 1u24A 96 :AFTPAQLKNVAAKLREK T0305 118 :NTGIIVMITNLVE 1u24A 115 :GPIYDVDLRQESH T0305 179 :GQKGNPKGRQNERVVI 1u24A 174 :LGKHKLPEGGEVRRVQ T0305 195 :QYHYTQWPDMGVP 1u24A 204 :RYFRIAATDHVWP T0305 209 :YALPVLTFVRRSSAA 1u24A 217 :TPENIDRFLAFYRTL T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1u24A 232 :PQDAWLHFHCEAGVGRTTAFMVMTDML T0305 257 :DKSTVNVLGFLKHIRTQRNYLVQT 1u24A 259 :KNPSVSLKDILYRQHEIGGFYYGE T0305 281 :EEQYIFIHDALLEAILG 1u24A 298 :YREKIVMIEQFYRYVQE Number of specific fragments extracted= 13 number of extra gaps= 0 total=3114 Number of alignments=406 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 206 :VPEYALPVLTFVRRS 1u24A 217 :TPENIDRFLAFYRTL T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1u24A 232 :PQDAWLHFHCEAGVGRTTAFMVMTDML T0305 257 :DKSTVNVLGFL 1u24A 259 :KNPSVSLKDIL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3117 Number of alignments=407 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 164 :YTVRRFSIRNT 1u24A 201 :AGMRYFRIAAT T0305 198 :YTQWP 1u24A 212 :DHVWP T0305 206 :VPEYALPVLTFVRRS 1u24A 217 :TPENIDRFLAFYRTL T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1u24A 232 :PQDAWLHFHCEAGVGRTTAFMVMTDML T0305 257 :DKSTVNVLGFLK 1u24A 259 :KNPSVSLKDILY Number of specific fragments extracted= 5 number of extra gaps= 0 total=3122 Number of alignments=408 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 202 :PDMGVP 1u24A 211 :TDHVWP T0305 209 :YALPVLTFVRRSSAA 1u24A 217 :TPENIDRFLAFYRTL T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1u24A 232 :PQDAWLHFHCEAGVGRTTAFMVMTDML T0305 257 :DKSTVNVLGFLKHIRTQ 1u24A 259 :KNPSVSLKDILYRQHEI Number of specific fragments extracted= 4 number of extra gaps= 0 total=3126 Number of alignments=409 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 4 :SMKQFVKHIGELYSN 1u24A 149 :SQHEALADERHRLHA T0305 62 :DHSRVKLRPLPGK 1u24A 165 :LHKTVYIAPLGKH T0305 139 :YWPTE 1u24A 178 :KLPEG T0305 144 :NSEEYGNI 1u24A 184 :EVRRVQKV T0305 187 :RQN 1u24A 201 :AGM T0305 195 :QYHYTQWPDMGVP 1u24A 204 :RYFRIAATDHVWP T0305 209 :YALPVLTFVRRSSAA 1u24A 217 :TPENIDRFLAFYRTL T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1u24A 232 :PQDAWLHFHCEAGVGRTTAFMVMTDML T0305 257 :DKSTVNVLGFLKHIRTQRNYLVQT 1u24A 259 :KNPSVSLKDILYRQHEIGGFYYGE T0305 281 :EEQYIFIHDALLEAIL 1u24A 295 :TKYYREKIVMIEQFYR Number of specific fragments extracted= 10 number of extra gaps= 0 total=3136 Number of alignments=410 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set Warning: unaligning (T0305)T34 because first residue in template chain is (1u24A)T23 Warning: unaligning (T0305)A294 because last residue in template chain is (1u24A)L336 T0305 35 :ADMNIT 1u24A 24 :VTEPVG T0305 51 :HKNRYINILAYDHSRVKLR 1u24A 30 :SYARAERPQDFEGFVWRLD T0305 79 :SD 1u24A 49 :ND T0305 81 :YINANYVDGYN 1u24A 129 :YLDGIPVSWYG T0305 142 :TENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1u24A 140 :ERDWANLGKSQHEALADERHRLHAALHKTVYIAP T0305 201 :WPDMGVPEY 1u24A 174 :LGKHKLPEG T0305 215 :TFVRRSSAARM 1u24A 183 :GEVRRVQKVQT T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1u24A 232 :PQDAWLHFHCEAGVGRTTAFMVMTDMLKNPSVSLK T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1u24A 303 :VMIEQFYRYVQENRADGYQTPWSVWLKSHPAKA Number of specific fragments extracted= 9 number of extra gaps= 0 total=3145 Number of alignments=411 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set Warning: unaligning (T0305)T34 because first residue in template chain is (1u24A)T23 T0305 35 :ADMNI 1u24A 24 :VTEPV T0305 79 :SD 1u24A 29 :GS T0305 173 :NTK 1u24A 210 :ATD T0305 199 :TQWP 1u24A 213 :HVWP T0305 206 :VPEYALPVLTFVRRSS 1u24A 217 :TPENIDRFLAFYRTLP T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1u24A 233 :QDAWLHFHCEAGVGRTTAFMVMTDMLKNPS T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDA 1u24A 303 :VMIEQFYRYVQENRADGYQTPWSVWLKSHP Number of specific fragments extracted= 7 number of extra gaps= 0 total=3152 Number of alignments=412 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set Warning: unaligning (T0305)T34 because first residue in template chain is (1u24A)T23 T0305 35 :ADMNI 1u24A 24 :VTEPV T0305 40 :TAEHSNHPENK 1u24A 30 :SYARAERPQDF T0305 62 :DHSRVKLRPLPGK 1u24A 41 :EGFVWRLDNDGKE T0305 81 :YI 1u24A 170 :YI T0305 127 :NLVEKG 1u24A 172 :APLGKH T0305 139 :YWPTENSEEY 1u24A 178 :KLPEGGEVRR T0305 187 :RQNERV 1u24A 188 :VQKVQT T0305 195 :QYHYTQWPDMGVP 1u24A 204 :RYFRIAATDHVWP T0305 209 :YALPVLTFVRRSSA 1u24A 217 :TPENIDRFLAFYRT T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSM 1u24A 231 :LPQDAWLHFHCEAGVGRTTAFMVMTDM T0305 255 :IKDKST 1u24A 258 :LKNPSV T0305 261 :VNVLGFLKHIRTQRNYLVQTE 1u24A 303 :VMIEQFYRYVQENRADGYQTP T0305 291 :LLEAILG 1u24A 324 :WSVWLKS Number of specific fragments extracted= 13 number of extra gaps= 0 total=3165 Number of alignments=413 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set Warning: unaligning (T0305)T34 because first residue in template chain is (1u24A)T23 T0305 35 :ADMNI 1u24A 24 :VTEPV T0305 40 :TAEHSNHPENKH 1u24A 30 :SYARAERPQDFE T0305 63 :HSRVKLRPLP 1u24A 42 :GFVWRLDNDG T0305 74 :KDS 1u24A 52 :KEA T0305 81 :YINANY 1u24A 90 :HISGSS T0305 101 :GPLKSTFEDFWRMIWEQNTG 1u24A 96 :AFTPAQLKNVAAKLREKTAG T0305 121 :IIVMITNLVE 1u24A 118 :YDVDLRQESH T0305 131 :KGR 1u24A 131 :DGI T0305 135 :KCDQYWPTENSEE 1u24A 174 :LGKHKLPEGGEVR T0305 148 :YGNII 1u24A 188 :VQKVQ T0305 192 :V 1u24A 193 :T T0305 195 :QYHYTQWPDMGVP 1u24A 204 :RYFRIAATDHVWP T0305 209 :YALPVLTFVRRSSA 1u24A 217 :TPENIDRFLAFYRT T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSML 1u24A 231 :LPQDAWLHFHCEAGVGRTTAFMVMTDML T0305 257 :DKSTVNVLGFLKHIRTQRNYLVQT 1u24A 259 :KNPSVSLKDILYRQHEIGGFYYGE T0305 281 :EEQYIFIHDALLEAILG 1u24A 298 :YREKIVMIEQFYRYVQE Number of specific fragments extracted= 16 number of extra gaps= 0 total=3181 Number of alignments=414 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 206 :VPEYALPVLTFVRRSS 1u24A 217 :TPENIDRFLAFYRTLP T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSML 1u24A 233 :QDAWLHFHCEAGVGRTTAFMVMTDML T0305 257 :DKSTVNVLGFL 1u24A 259 :KNPSVSLKDIL Number of specific fragments extracted= 3 number of extra gaps= 0 total=3184 Number of alignments=415 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 200 :QWP 1u24A 214 :VWP T0305 206 :VPEYALPVLTFVRRSS 1u24A 217 :TPENIDRFLAFYRTLP T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSML 1u24A 233 :QDAWLHFHCEAGVGRTTAFMVMTDML T0305 257 :DKSTVNVLGFLK 1u24A 259 :KNPSVSLKDILY Number of specific fragments extracted= 4 number of extra gaps= 0 total=3188 Number of alignments=416 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 140 :WPTENSEEY 1u24A 179 :LPEGGEVRR T0305 187 :RQNERV 1u24A 188 :VQKVQT T0305 195 :QYHYTQWPDMGVP 1u24A 204 :RYFRIAATDHVWP T0305 209 :YALPVLTFVRRSSA 1u24A 217 :TPENIDRFLAFYRT T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSML 1u24A 231 :LPQDAWLHFHCEAGVGRTTAFMVMTDML T0305 257 :DKSTVNVLGFLKHIRTQ 1u24A 259 :KNPSVSLKDILYRQHEI Number of specific fragments extracted= 6 number of extra gaps= 0 total=3194 Number of alignments=417 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 3 :QSMKQFVKHIGELY 1u24A 148 :KSQHEALADERHRL T0305 28 :EEVQ 1u24A 162 :HAAL T0305 63 :HSRVKLRPLPGK 1u24A 166 :HKTVYIAPLGKH T0305 139 :YWPTENSEE 1u24A 178 :KLPEGGEVR T0305 148 :YGNII 1u24A 188 :VQKVQ T0305 187 :RQNE 1u24A 201 :AGMR T0305 196 :YHYTQWPDMGVP 1u24A 205 :YFRIAATDHVWP T0305 209 :YALPVLTFVRRSSA 1u24A 217 :TPENIDRFLAFYRT T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSML 1u24A 231 :LPQDAWLHFHCEAGVGRTTAFMVMTDML T0305 257 :DKSTVNVLGFLKHIRTQRNYLVQT 1u24A 259 :KNPSVSLKDILYRQHEIGGFYYGE T0305 281 :EEQYIFIHDALLEAIL 1u24A 295 :TKYYREKIVMIEQFYR Number of specific fragments extracted= 11 number of extra gaps= 0 total=3205 Number of alignments=418 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set Warning: unaligning (T0305)A294 because last residue in template chain is (1u24A)L336 T0305 205 :GVPEYALPVLTFVRRSSA 1u24A 213 :HVWPTPENIDRFLAFYRT T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 1u24A 231 :LPQDAWLHFHCEAGVGRTTAFMVMTDMLKNPSV T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1u24A 300 :EKIVMIEQFYRYVQENRADGYQTPWSVWLKSHPAKA Number of specific fragments extracted= 3 number of extra gaps= 0 total=3208 Number of alignments=419 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set Warning: unaligning (T0305)C33 because first residue in template chain is (1u24A)T23 Warning: unaligning (T0305)A294 because last residue in template chain is (1u24A)L336 T0305 34 :TADMNITAEHSNHPENK 1u24A 24 :VTEPVGSYARAERPQDF T0305 205 :GVPEYALPVLTFVRR 1u24A 216 :PTPENIDRFLAFYRT T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1u24A 231 :LPQDAWLHFHCEAGVGRTTAFMVMTDMLKN T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1u24A 300 :EKIVMIEQFYRYVQENRADGYQTPWSVWLKSHPAKA Number of specific fragments extracted= 4 number of extra gaps= 0 total=3212 Number of alignments=420 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set Warning: unaligning (T0305)C33 because first residue in template chain is (1u24A)T23 T0305 34 :TADMNITAEHSNHPENKHK 1u24A 24 :VTEPVGSYARAERPQDFEG T0305 64 :SRVKLRPLPGKDSKHSDYINANYVDG 1u24A 43 :FVWRLDNDGKEALPRNFRTSADALRA T0305 129 :VEKGRRKCDQYWPT 1u24A 69 :PEKKFHLDAAYVPS T0305 206 :VPEYALPVLTFVRRSSA 1u24A 214 :VWPTPENIDRFLAFYRT T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQ 1u24A 231 :LPQDAWLHFHCEAGVGRTTAFMVMTDMLK T0305 258 :KSTVNVLGFLKHIRTQRNYLVQT 1u24A 260 :NPSVSLKDILYRQHEIGGFYYGE T0305 281 :EEQYIFIHDALLEAILG 1u24A 298 :YREKIVMIEQFYRYVQE Number of specific fragments extracted= 7 number of extra gaps= 0 total=3219 Number of alignments=421 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set Warning: unaligning (T0305)A35 because first residue in template chain is (1u24A)T23 T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDH 1u24A 24 :VTEPVGSYARAERPQDFEGFVWRLDNDG T0305 72 :PGKDSKHSD 1u24A 79 :YVPSREGMD T0305 93 :AKAYIATQGPLKSTFEDFWRMIWEQ 1u24A 88 :ALHISGSSAFTPAQLKNVAAKLREK T0305 118 :NTGIIVMITNLVE 1u24A 115 :GPIYDVDLRQESH T0305 198 :YTQWPDMGVP 1u24A 207 :RIAATDHVWP T0305 209 :YALPVLTFVRRSSA 1u24A 217 :TPENIDRFLAFYRT T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQ 1u24A 231 :LPQDAWLHFHCEAGVGRTTAFMVMTDMLK T0305 258 :KSTVNVLGFLKHIRTQRNYLVQT 1u24A 260 :NPSVSLKDILYRQHEIGGFYYGE T0305 281 :EEQYIFIHDALLEAILG 1u24A 295 :TKYYREKIVMIEQFYRY Number of specific fragments extracted= 9 number of extra gaps= 0 total=3228 Number of alignments=422 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 234 :HCSAGVGRTGTYIVIDSML 1u24A 240 :HCEAGVGRTTAFMVMTDML Number of specific fragments extracted= 1 number of extra gaps= 0 total=3229 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 201 :W 1u24A 215 :W T0305 205 :GVPEYALPVLTFVRR 1u24A 216 :PTPENIDRFLAFYRT T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSM 1u24A 231 :LPQDAWLHFHCEAGVGRTTAFMVMTDM T0305 256 :KDKSTVNVLGFLK 1u24A 258 :LKNPSVSLKDILY Number of specific fragments extracted= 4 number of extra gaps= 0 total=3233 Number of alignments=423 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set T0305 205 :GVPEYALPVLTFVRRSSA 1u24A 213 :HVWPTPENIDRFLAFYRT T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQ 1u24A 231 :LPQDAWLHFHCEAGVGRTTAFMVMTDMLK T0305 258 :KSTVNVLGFLKHIRTQ 1u24A 260 :NPSVSLKDILYRQHEI Number of specific fragments extracted= 3 number of extra gaps= 0 total=3236 Number of alignments=424 # 1u24A read from 1u24A/merged-a2m # found chain 1u24A in template set Warning: unaligning (T0305)A35 because first residue in template chain is (1u24A)T23 T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDH 1u24A 24 :VTEPVGSYARAERPQDFEGFVWRLDNDG T0305 72 :PGKDSKHSD 1u24A 79 :YVPSREGMD T0305 93 :AKAYIATQGPLKSTFEDFWRMIWEQ 1u24A 88 :ALHISGSSAFTPAQLKNVAAKLREK T0305 118 :NTGIIVMITNLVE 1u24A 115 :GPIYDVDLRQESH T0305 198 :YTQWPDMGVP 1u24A 207 :RIAATDHVWP T0305 209 :YALPVLTFVRRSSA 1u24A 217 :TPENIDRFLAFYRT T0305 225 :MPETGPVLVHCSAGVGRTGTYIVIDSMLQ 1u24A 231 :LPQDAWLHFHCEAGVGRTTAFMVMTDMLK T0305 258 :KSTVNVLGFLKHIRTQRNYLVQT 1u24A 260 :NPSVSLKDILYRQHEIGGFYYGE T0305 281 :EEQYIFIHDALLEAIL 1u24A 295 :TKYYREKIVMIEQFYR Number of specific fragments extracted= 9 number of extra gaps= 0 total=3245 Number of alignments=425 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pty/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1pty expands to /projects/compbio/data/pdb/1pty.pdb.gz 1pty:Warning: there is no chain 1pty will retry with 1ptyA Skipped atom 397, because occupancy 0.490 <= existing 0.510 in 1pty Skipped atom 399, because occupancy 0.490 <= existing 0.510 in 1pty Skipped atom 401, because occupancy 0.490 <= existing 0.510 in 1pty # T0305 read from 1pty/merged-a2m # 1pty read from 1pty/merged-a2m # adding 1pty to template set # found chain 1pty in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1pty)E2 T0305 8 :FVKHIGELYSN 1pty 3 :MEKEFEQIDKS T0305 21 :HGFSEDFEEVQRCTAD 1pty 14 :GSWAAIYQDIRHEASD T0305 39 :ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1pty 30 :FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1pty 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEY 1pty 131 :KEMIF T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNT 1pty 138 :TNLKLTLISEDIKSYYTVRQLELENL T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1pty 164 :TTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1pty 203 :SLSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1pty 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3254 Number of alignments=426 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set T0305 10 :KHIGELYSN 1pty 5 :KEFEQIDKS T0305 21 :HGFSEDFEEVQRCTAD 1pty 14 :GSWAAIYQDIRHEASD T0305 39 :ITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1pty 30 :FPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1pty 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEY 1pty 131 :KEMIF T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNT 1pty 138 :TNLKLTLISEDIKSYYTVRQLELENL T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1pty 164 :TTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1pty 203 :SLSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1pty 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGA Number of specific fragments extracted= 9 number of extra gaps= 0 total=3263 Number of alignments=427 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)V9 because first residue in template chain is (1pty)E2 T0305 10 :KHIGELYSNNQHGFSEDFEEVQRCTA 1pty 3 :MEKEFEQIDKSGSWAAIYQDIRHEAS T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 29 :DFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEYGN 1pty 131 :KEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNT 1pty 140 :LKLTLISEDIKSYYTVRQLELENL T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 164 :TTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLM T0305 256 :KDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1pty 239 :KDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 8 number of extra gaps= 0 total=3271 Number of alignments=428 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)K10 because first residue in template chain is (1pty)E2 T0305 11 :H 1pty 3 :M T0305 12 :IGELYSNNQHGFSEDFEEVQRCTA 1pty 5 :KEFEQIDKSGSWAAIYQDIRHEAS T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 29 :DFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEYGN 1pty 131 :KEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNT 1pty 140 :LKLTLISEDIKSYYTVRQLELENL T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 167 :ETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLM T0305 256 :KDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1pty 239 :KDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=3280 Number of alignments=429 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set T0305 14 :ELYSNNQHGFSEDFEEVQRCTA 1pty 7 :FEQIDKSGSWAAIYQDIRHEAS T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 29 :DFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEYGN 1pty 131 :KEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNT 1pty 140 :LKLTLISEDIKSYYTVRQLELENL T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 164 :TTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLM T0305 256 :KDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1pty 239 :KDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 8 number of extra gaps= 0 total=3288 Number of alignments=430 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set T0305 14 :ELYSNNQHGFSEDFEEVQRCTA 1pty 7 :FEQIDKSGSWAAIYQDIRHEAS T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 29 :DFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEYGN 1pty 131 :KEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNT 1pty 140 :LKLTLISEDIKSYYTVRQLELENL T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 167 :ETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLM T0305 256 :KDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1pty 239 :KDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 8 number of extra gaps= 0 total=3296 Number of alignments=431 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set T0305 47 :PENKHKNRYINILAYDHSRVKLR 1pty 38 :PKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTKV 1pty 138 :TNLKLTLISEDIKSYYTVRQLELENLTT T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFV 1pty 166 :QETREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1pty 198 :VRESGSLSPEHGPVVVHSSAGIGRSGTFCLADTCL T0305 253 :QQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1pty 236 :DKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=3302 Number of alignments=432 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1pty 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTK 1pty 138 :TNLKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFV 1pty 165 :TQETREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1pty 198 :VRESGSLSPEHGPVVVHSSAGIGRSGTFCLADTCL T0305 253 :QQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1pty 236 :DKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=3308 Number of alignments=433 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)V9 because first residue in template chain is (1pty)E2 T0305 10 :KHIGELYSNNQHGFSEDFEEVQRCTADM 1pty 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pty 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pty 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 8 number of extra gaps= 0 total=3316 Number of alignments=434 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1pty)E2 T0305 8 :FVKHIGEL 1pty 3 :MEKEFEQI T0305 18 :NNQHGFSEDFEEVQRCTADM 1pty 11 :DKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pty 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pty 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=3325 Number of alignments=435 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1pty)E2 T0305 8 :FVKHIGELYSNNQ 1pty 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQRCTADM 1pty 16 :WAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pty 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pty 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE T0305 294 :AILG 1pty 280 :FIMG Number of specific fragments extracted= 10 number of extra gaps= 0 total=3335 Number of alignments=436 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1pty)E2 T0305 8 :FVKHIGELYSNN 1pty 3 :MEKEFEQIDKSG T0305 22 :GFSEDFEEVQRCTADM 1pty 15 :SWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYG 1pty 129 :EEKEMIFE T0305 150 :NIIVTLKSTKIHACYTVRRFSIRN 1pty 139 :NLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE T0305 294 :AILG 1pty 280 :FIMG Number of specific fragments extracted= 10 number of extra gaps= 0 total=3345 Number of alignments=437 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set T0305 13 :GELYSNNQHGFSEDFEEVQRCTADM 1pty 6 :EFEQIDKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pty 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pty 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 8 number of extra gaps= 0 total=3353 Number of alignments=438 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set T0305 18 :NNQHGFSEDFEEVQRCTADM 1pty 11 :DKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pty 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pty 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGA Number of specific fragments extracted= 8 number of extra gaps= 0 total=3361 Number of alignments=439 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1pty)E2 T0305 8 :FVKHIGELYSNNQ 1pty 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQRCTADM 1pty 16 :WAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pty 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pty 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3370 Number of alignments=440 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set T0305 8 :FVKHIGELYSNN 1pty 3 :MEKEFEQIDKSG T0305 22 :GFSEDFEEVQRCTADM 1pty 15 :SWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYG 1pty 129 :EEKEMIFE T0305 150 :NIIVTLKSTKIHACYTVRRFSIRN 1pty 139 :NLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3379 Number of alignments=441 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1pty)E2 T0305 8 :FVKHIGELYSNNQ 1pty 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1pty 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1pty 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pty 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pty 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1pty 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=3388 Number of alignments=442 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1pty)E2 T0305 8 :FVKHIGELYSNNQ 1pty 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1pty 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1pty 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pty 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pty 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1pty 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=3397 Number of alignments=443 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1pty)E2 T0305 8 :FVKHIGELYSNNQ 1pty 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1pty 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRP 1pty 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ T0305 77 :KHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 62 :EDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pty 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pty 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE T0305 294 :AILG 1pty 280 :FIMG Number of specific fragments extracted= 10 number of extra gaps= 0 total=3407 Number of alignments=444 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1pty)E2 T0305 5 :MKQFVKHIGELY 1pty 3 :MEKEFEQIDKSG T0305 22 :GFSEDFEEVQRCTA 1pty 15 :SWAAIYQDIRHEAS T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 29 :DFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pty 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pty 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE T0305 294 :AILG 1pty 280 :FIMG Number of specific fragments extracted= 10 number of extra gaps= 0 total=3417 Number of alignments=445 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set T0305 13 :GELYSNNQHGFSEDFEEVQ 1pty 6 :EFEQIDKSGSWAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1pty 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pty 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pty 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1pty 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE Number of specific fragments extracted= 8 number of extra gaps= 0 total=3425 Number of alignments=446 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set T0305 15 :LY 1pty 10 :ID T0305 19 :NQHGFSEDFEEVQ 1pty 12 :KSGSWAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1pty 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pty 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pty 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1pty 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG Number of specific fragments extracted= 9 number of extra gaps= 0 total=3434 Number of alignments=447 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1pty)E2 T0305 8 :FVKHIGELYSNNQ 1pty 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1pty 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRP 1pty 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ T0305 77 :KHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 62 :EDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pty 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pty 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3443 Number of alignments=448 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1pty)E2 T0305 5 :MKQFVKHIGEL 1pty 3 :MEKEFEQIDKS T0305 21 :HGFSEDFEEVQRCTA 1pty 14 :GSWAAIYQDIRHEAS T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 29 :DFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1pty 129 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1pty 140 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1pty 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 204 :LSPEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3452 Number of alignments=449 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)H11 because first residue in template chain is (1pty)E2 T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1pty 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1pty 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1pty 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1pty 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 6 number of extra gaps= 0 total=3458 Number of alignments=450 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)H11 because first residue in template chain is (1pty)E2 T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1pty 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1pty 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1pty 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1pty 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 6 number of extra gaps= 0 total=3464 Number of alignments=451 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)H11 because first residue in template chain is (1pty)E2 T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYG 1pty 130 :EKEMIFE T0305 150 :NIIVTLKSTKIHACYTVRRFSIRN 1pty 139 :NLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1pty 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 7 number of extra gaps= 0 total=3471 Number of alignments=452 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set Warning: unaligning (T0305)H11 because first residue in template chain is (1pty)E2 T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYG 1pty 130 :EKEMIFE T0305 150 :NIIVTLKSTKIHACYTVRRFSIRN 1pty 139 :NLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1pty 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 7 number of extra gaps= 0 total=3478 Number of alignments=453 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 13 :SGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1pty 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1pty 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1pty 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1pty 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=3484 Number of alignments=454 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 8 :EQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1pty 132 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1pty 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1pty 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1pty 242 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=3490 Number of alignments=455 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYG 1pty 130 :EKEMIFE T0305 150 :NIIVTLKSTKIHACYTVRRFSIRN 1pty 139 :NLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1pty 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGA Number of specific fragments extracted= 7 number of extra gaps= 0 total=3497 Number of alignments=456 # 1pty read from 1pty/merged-a2m # found chain 1pty in template set T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1pty 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1pty 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYG 1pty 130 :EKEMIFE T0305 150 :NIIVTLKSTKIHACYTVRRFSIRN 1pty 139 :NLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1pty 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1pty 206 :PEHGPVVVHSSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1pty 244 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 7 number of extra gaps= 0 total=3504 Number of alignments=457 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zckA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zckA expands to /projects/compbio/data/pdb/1zck.pdb.gz 1zckA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0305 read from 1zckA/merged-a2m # 1zckA read from 1zckA/merged-a2m # adding 1zckA to template set # found chain 1zckA in template set Warning: unaligning (T0305)D203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zckA)G73 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 1 :YFQSMKQFVKHIGELYSNNQ 1zckA 9 :PVEVTYKNMRFLITHNPTNA T0305 106 :TFEDFWRMIWEQNTGIIVMI 1zckA 29 :TLNKFIEELKKYGVTTIVRV T0305 182 :GNPKGRQNERVVIQYHYTQWP 1zckA 49 :CEATYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARMP 1zckA 74 :APPSNQIVDDWLSLVKIKFRE T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 96 :PGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQT 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDALLEAILG 1zckA 144 :KQLLYLEKYRPKMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=3511 Number of alignments=458 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)D203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zckA)G73 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 1 :YFQSMKQFVKHIGELYSNNQ 1zckA 9 :PVEVTYKNMRFLITHNPTNA T0305 106 :TFEDFWRMIWEQNTGIIVMI 1zckA 29 :TLNKFIEELKKYGVTTIVRV T0305 182 :GNPKGRQNERVVIQYHYTQWP 1zckA 49 :CEATYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARMP 1zckA 74 :APPSNQIVDDWLSLVKIKFRE T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 96 :PGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQT 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDALLEAILG 1zckA 144 :KQLLYLEKYRPKMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=3518 Number of alignments=459 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)Y86 because first residue in template chain is (1zckA)P9 Warning: unaligning (T0305)D203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zckA)G73 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 1zckA 10 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRV T0305 182 :GNPKGRQNERVVIQYHYTQWP 1zckA 49 :CEATYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARMP 1zckA 74 :APPSNQIVDDWLSLVKIKFRE T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 96 :PGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQT 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDALLEAILG 1zckA 144 :KQLLYLEKYRPKMRLR Number of specific fragments extracted= 6 number of extra gaps= 0 total=3524 Number of alignments=460 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)D203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zckA)G73 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMI 1zckA 10 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRV T0305 182 :GNPKGRQNERVVIQYHYTQWP 1zckA 49 :CEATYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARMP 1zckA 74 :APPSNQIVDDWLSLVKIKFRE T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 96 :PGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQT 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNS T0305 282 :EQYIFIHDALLEAIL 1zckA 144 :KQLLYLEKYRPKMRL Number of specific fragments extracted= 6 number of extra gaps= 0 total=3530 Number of alignments=461 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)Y86 because first residue in template chain is (1zckA)P9 Warning: unaligning (T0305)W201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zckA)G73 Warning: unaligning (T0305)M204 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKG 1zckA 10 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDT T0305 189 :NERVVIQYHYTQ 1zckA 58 :VEKEGIHVLDWP T0305 205 :GVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1zckA 74 :APPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1zckA 122 :GGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRF Number of specific fragments extracted= 4 number of extra gaps= 0 total=3534 Number of alignments=462 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)W201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zckA)G73 Warning: unaligning (T0305)M204 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKG 1zckA 10 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDT T0305 189 :NERVVIQYHYTQ 1zckA 58 :VEKEGIHVLDWP T0305 205 :GVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1zckA 74 :APPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1zckA 122 :GGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRF Number of specific fragments extracted= 4 number of extra gaps= 0 total=3538 Number of alignments=463 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)W201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zckA)G73 Warning: unaligning (T0305)M204 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKG 1zckA 10 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDT T0305 189 :NERVVIQYHYTQ 1zckA 58 :VEKEGIHVLDWP T0305 205 :GVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1zckA 74 :APPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHD 1zckA 122 :GGMKYEDAVQFIRQKRRGAFNSKQLLYLEKY Number of specific fragments extracted= 4 number of extra gaps= 0 total=3542 Number of alignments=464 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)W201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1zckA)G73 Warning: unaligning (T0305)M204 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKG 1zckA 11 :EVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDT T0305 189 :NERVVIQYHYTQ 1zckA 58 :VEKEGIHVLDWP T0305 205 :GVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1zckA 74 :APPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHD 1zckA 122 :GGMKYEDAVQFIRQKRRGAFNSKQLLYLEKY Number of specific fragments extracted= 4 number of extra gaps= 0 total=3546 Number of alignments=465 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set T0305 231 :VLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVL 1zckA 100 :IAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFI Number of specific fragments extracted= 1 number of extra gaps= 0 total=3547 Number of alignments=466 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 206 :VPEYALPVLTFVRRSSAARMPETG 1zckA 74 :APPSNQIVDDWLSLVKIKFREEPG T0305 230 :PVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTV 1zckA 99 :CIAVHCVAGLGRAPVLVALALIEGGMKYEDAV Number of specific fragments extracted= 2 number of extra gaps= 0 total=3549 Number of alignments=467 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)E42 because first residue in template chain is (1zckA)P9 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 43 :HSNHPENKH 1zckA 10 :VEVTYKNMR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1zckA 19 :FLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 187 :RQNERVVIQYHYTQWP 1zckA 54 :DTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSS 1zckA 74 :APPSNQIVDDWLSLVK T0305 222 :AARMPETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 91 :KFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTE 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSK T0305 283 :QYIFIHDALLEAILG 1zckA 145 :QLLYLEKYRPKMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=3556 Number of alignments=468 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)E42 because first residue in template chain is (1zckA)P9 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 43 :HSNHPEN 1zckA 10 :VEVTYKN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1zckA 17 :MRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 187 :RQNERVVIQYHYTQWP 1zckA 54 :DTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSS 1zckA 74 :APPSNQIVDDWLSLVK T0305 222 :AARMPETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 91 :KFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTE 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSK T0305 283 :QYIFIHDALLEAILG 1zckA 145 :QLLYLEKYRPKMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=3563 Number of alignments=469 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)Y86 because first residue in template chain is (1zckA)P9 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1zckA 10 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 130 :EKGR 1zckA 59 :EKEG T0305 196 :YHYTQWP 1zckA 63 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSS 1zckA 74 :APPSNQIVDDWLSLVK T0305 222 :AARMPETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 91 :KFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEE 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSKQ T0305 292 :LEAILG 1zckA 146 :LLYLEK Number of specific fragments extracted= 7 number of extra gaps= 0 total=3570 Number of alignments=470 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)R65 because first residue in template chain is (1zckA)P9 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 66 :VKLR 1zckA 10 :VEVT T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1zckA 14 :YKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 130 :EK 1zckA 59 :EK T0305 185 :KG 1zckA 61 :EG T0305 196 :YHYTQWP 1zckA 63 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTE 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSK T0305 291 :LLEAILG 1zckA 145 :QLLYLEK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3579 Number of alignments=471 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1zckA 18 :RFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 187 :RQNERVVIQYHYTQWP 1zckA 54 :DTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSS 1zckA 74 :APPSNQIVDDWLSLVK T0305 222 :AARMPETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 91 :KFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIF 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSKQLLYL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3584 Number of alignments=472 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1zckA 17 :MRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 185 :K 1zckA 53 :Y T0305 187 :RQNERVVIQYHYTQWP 1zckA 54 :DTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSS 1zckA 74 :APPSNQIVDDWLSLVK T0305 222 :AARMPETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 91 :KFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQY 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSKQLL Number of specific fragments extracted= 6 number of extra gaps= 0 total=3590 Number of alignments=473 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1zckA 10 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 130 :EKGR 1zckA 59 :EKEG T0305 196 :YHYTQWP 1zckA 63 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSS 1zckA 74 :APPSNQIVDDWLSLVK T0305 222 :AARMPETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 91 :KFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEE 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSKQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=3596 Number of alignments=474 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 89 :GYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1zckA 12 :VTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 130 :EK 1zckA 59 :EK T0305 185 :KG 1zckA 61 :EG T0305 196 :YHYTQWP 1zckA 63 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLV 1zckA 121 :EGGMKYEDAVQFIRQKRRGAF T0305 280 :TEEQYIFIH 1zckA 142 :NSKQLLYLE Number of specific fragments extracted= 8 number of extra gaps= 0 total=3604 Number of alignments=475 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)G22 because first residue in template chain is (1zckA)P9 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 23 :FSEDFEEVQ 1zckA 10 :VEVTYKNMR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1zckA 19 :FLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 187 :RQNERVVIQYHYTQWP 1zckA 54 :DTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRS 1zckA 74 :APPSNQIVDDWLSLV T0305 221 :SAARMPETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 90 :IKFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRF Number of specific fragments extracted= 6 number of extra gaps= 0 total=3610 Number of alignments=476 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)D36 because first residue in template chain is (1zckA)P9 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 37 :MN 1zckA 10 :VE T0305 89 :GYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1zckA 12 :VTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 187 :RQNERVVIQYHYTQWP 1zckA 54 :DTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTE 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSK T0305 283 :QYIFIHDALLEAILG 1zckA 145 :QLLYLEKYRPKMRLR Number of specific fragments extracted= 7 number of extra gaps= 0 total=3617 Number of alignments=477 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)Y86 because first residue in template chain is (1zckA)P9 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1zckA 10 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 175 :KVKKGQ 1zckA 54 :DTTLVE T0305 187 :RQN 1zckA 60 :KEG T0305 196 :YHYTQWP 1zckA 63 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEE 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSKQ T0305 292 :LEAILG 1zckA 146 :LLYLEK Number of specific fragments extracted= 8 number of extra gaps= 0 total=3625 Number of alignments=478 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)R65 because first residue in template chain is (1zckA)P9 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 66 :VKLR 1zckA 10 :VEVT T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1zckA 14 :YKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 174 :TKVKKGQK 1zckA 53 :YDTTLVEK T0305 187 :RQ 1zckA 61 :EG T0305 196 :YHYTQWP 1zckA 63 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQT 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNS T0305 282 :EQ 1zckA 144 :KQ T0305 292 :LEAILG 1zckA 146 :LLYLEK Number of specific fragments extracted= 10 number of extra gaps= 0 total=3635 Number of alignments=479 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 145 :SEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNER 1zckA 11 :EVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTL T0305 192 :VVIQYHYTQWP 1zckA 59 :EKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRS 1zckA 74 :APPSNQIVDDWLSLV T0305 221 :SAARMPETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 90 :IKFREEPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIF 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSKQLLYL Number of specific fragments extracted= 5 number of extra gaps= 0 total=3640 Number of alignments=480 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITN 1zckA 18 :RFLITHNPTNATLNKFIEELKKYGVTTIVRVCE T0305 185 :KGRQNER 1zckA 51 :ATYDTTL T0305 192 :VVIQYHYTQWP 1zckA 59 :EKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQY 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSKQLL Number of specific fragments extracted= 6 number of extra gaps= 0 total=3646 Number of alignments=481 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1zckA 10 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 175 :KVKKGQ 1zckA 54 :DTTLVE T0305 187 :RQN 1zckA 60 :KEG T0305 196 :YHYTQWP 1zckA 63 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEE 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSKQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=3653 Number of alignments=482 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 89 :GYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1zckA 12 :VTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 174 :TKVKKGQK 1zckA 53 :YDTTLVEK T0305 187 :RQ 1zckA 61 :EG T0305 196 :YHYTQWP 1zckA 63 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLV 1zckA 121 :EGGMKYEDAVQFIRQKRRGAF T0305 280 :TEEQYIFI 1zckA 142 :NSKQLLYL Number of specific fragments extracted= 8 number of extra gaps= 0 total=3661 Number of alignments=483 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)Y86 because first residue in template chain is (1zckA)P9 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1zckA 10 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEA T0305 185 :KGRQNERVVIQYHYTQWP 1zckA 52 :TYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRF Number of specific fragments extracted= 5 number of extra gaps= 0 total=3666 Number of alignments=484 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)Y86 because first residue in template chain is (1zckA)P9 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1zckA 10 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 186 :GRQNERVVIQYHYTQWP 1zckA 53 :YDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRF Number of specific fragments extracted= 5 number of extra gaps= 0 total=3671 Number of alignments=485 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)R65 because first residue in template chain is (1zckA)P9 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 66 :VKLR 1zckA 10 :VEVT T0305 91 :NKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1zckA 14 :YKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 140 :WPT 1zckA 54 :DTT T0305 143 :EN 1zckA 61 :EG T0305 196 :YHYTQWP 1zckA 63 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLVQTEE 1zckA 122 :GGMKYEDAVQFIRQKRRGAFNSKQ T0305 292 :LEAILG 1zckA 146 :LLYLEK Number of specific fragments extracted= 9 number of extra gaps= 0 total=3680 Number of alignments=486 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)H63 because first residue in template chain is (1zckA)P9 Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 64 :SRVKLR 1zckA 10 :VEVTYK T0305 93 :AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1zckA 16 :NMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 196 :YHYTQWP 1zckA 63 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLV 1zckA 122 :GGMKYEDAVQFIRQKRRGAF T0305 280 :TEEQYIFI 1zckA 142 :NSKQLLYL Number of specific fragments extracted= 7 number of extra gaps= 0 total=3687 Number of alignments=487 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1zckA 10 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEA T0305 185 :KGRQNERVVIQYHYTQWP 1zckA 52 :TYDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEE 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSKQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=3692 Number of alignments=488 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 88 :DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLV 1zckA 11 :EVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT T0305 186 :GRQNERVVIQYHYTQWP 1zckA 53 :YDTTLVEKEGIHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALI T0305 258 :KSTVNVLGFLKHIRTQRNYLVQTEE 1zckA 121 :EGGMKYEDAVQFIRQKRRGAFNSKQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=3697 Number of alignments=489 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 87 :VDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1zckA 10 :VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 140 :WPT 1zckA 54 :DTT T0305 143 :EN 1zckA 61 :EG T0305 196 :YHYTQWP 1zckA 63 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLVQTEE 1zckA 122 :GGMKYEDAVQFIRQKRRGAFNSKQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=3704 Number of alignments=490 # 1zckA read from 1zckA/merged-a2m # found chain 1zckA in template set Warning: unaligning (T0305)G205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1zckA)G73 T0305 65 :RVKLR 1zckA 11 :EVTYK T0305 93 :AKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1zckA 16 :NMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATY T0305 196 :YHYTQWP 1zckA 63 :IHVLDWP T0305 206 :VPEYALPVLTFVRRSSAARM 1zckA 74 :APPSNQIVDDWLSLVKIKFR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1zckA 95 :EPGCCIAVHCVAGLGRAPVLVALALIE T0305 259 :STVNVLGFLKHIRTQRNYLV 1zckA 122 :GGMKYEDAVQFIRQKRRGAF T0305 280 :TEEQYIFI 1zckA 142 :NSKQLLYL Number of specific fragments extracted= 7 number of extra gaps= 0 total=3711 Number of alignments=491 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ytn/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ytn expands to /projects/compbio/data/pdb/1ytn.pdb.gz 1ytn:Warning: there is no chain 1ytn will retry with 1ytnA # T0305 read from 1ytn/merged-a2m # 1ytn read from 1ytn/merged-a2m # adding 1ytn to template set # found chain 1ytn in template set Warning: unaligning (T0305)I12 because first residue in template chain is (1ytn)V186 T0305 13 :GELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1ytn 187 :SPYGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA T0305 81 :YINANYVDGYN 1ytn 243 :DLNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEK 1ytn 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEI T0305 132 :GRRKCDQYWP 1ytn 294 :QRFGMPDYFR T0305 144 :NSEEYGNIIVTLKSTK 1ytn 304 :QSGTYGSITVESKMTQ T0305 160 :IHACYTVRRFSIRNTKVKKGQ 1ytn 322 :GLGDGIMADMYTLTIREAGQK T0305 190 :ERVVIQYHYTQWPDM 1ytn 343 :TISVPVVHVGNWPDQ T0305 205 :GVPEYALPVLTFVRRSSAARM 1ytn 359 :AVSSEVTKALASLVDQTAETK T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDSR T0305 258 :KSTVNVLGFLKHIRTQRNY 1ytn 424 :NSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAILG 1ytn 444 :MVQKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 11 number of extra gaps= 0 total=3722 Number of alignments=492 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set Warning: unaligning (T0305)I12 because first residue in template chain is (1ytn)V186 T0305 13 :GELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1ytn 187 :SPYGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA T0305 81 :YINANYVDGYN 1ytn 243 :DLNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEK 1ytn 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEI T0305 132 :GRRKCDQYWP 1ytn 294 :QRFGMPDYFR T0305 144 :NSEEYGNIIVTLKSTK 1ytn 304 :QSGTYGSITVESKMTQ T0305 160 :IHACYTVRRFSIRNTKVKKGQ 1ytn 322 :GLGDGIMADMYTLTIREAGQK T0305 190 :ERVVIQYHYTQWPDM 1ytn 343 :TISVPVVHVGNWPDQ T0305 205 :GVPEYALPVLTFVRRSSAARM 1ytn 359 :AVSSEVTKALASLVDQTAETK T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDSR T0305 258 :KSTVNVLGFLKHIRTQRNY 1ytn 424 :NSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAILG 1ytn 444 :MVQKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 11 number of extra gaps= 0 total=3733 Number of alignments=493 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set Warning: unaligning (T0305)I12 because first residue in template chain is (1ytn)V186 T0305 13 :GELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1ytn 187 :SPYGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA T0305 81 :YINANYVDGYN 1ytn 243 :DLNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEK 1ytn 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEI T0305 132 :GRRKCDQYWP 1ytn 294 :QRFGMPDYFR T0305 144 :NSEEYGNIIVTLKSTK 1ytn 304 :QSGTYGSITVESKMTQ T0305 160 :IHACYTVRRFSIRNTKVKKGQ 1ytn 322 :GLGDGIMADMYTLTIREAGQK T0305 190 :ERVVIQYHYTQWPDM 1ytn 343 :TISVPVVHVGNWPDQ T0305 205 :GVPEYALPVLTFVRRSSAARM 1ytn 359 :AVSSEVTKALASLVDQTAETK T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDSR T0305 258 :KSTVNVLGFLKHIRTQRNY 1ytn 424 :NSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAI 1ytn 444 :MVQKDEQLDVLIKLAEGQG Number of specific fragments extracted= 11 number of extra gaps= 0 total=3744 Number of alignments=494 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 15 :LYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1ytn 189 :YGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA T0305 81 :YINANYVDGYN 1ytn 243 :DLNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEK 1ytn 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEI T0305 132 :GRRKCDQYWP 1ytn 294 :QRFGMPDYFR T0305 144 :NSEEYGNIIVTLKSTK 1ytn 304 :QSGTYGSITVESKMTQ T0305 160 :IHACYTVRRFSIRNTKVKKGQ 1ytn 322 :GLGDGIMADMYTLTIREAGQK T0305 190 :ERVVIQYHYTQWPDM 1ytn 343 :TISVPVVHVGNWPDQ T0305 205 :GVPEYALPVLTFVRRSSAARM 1ytn 359 :AVSSEVTKALASLVDQTAETK T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDSR T0305 258 :KSTVNVLGFLKHIRTQRNY 1ytn 424 :NSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAI 1ytn 444 :MVQKDEQLDVLIKLAEGQG Number of specific fragments extracted= 11 number of extra gaps= 0 total=3755 Number of alignments=495 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 20 :QHGFSEDFEEVQRCTADM 1ytn 191 :PEARAELSSRLTTLRNTL T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVK 1ytn 212 :TNDPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 80 :DYINANYVDGYNK 1ytn 242 :ADLNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYWPT 1ytn 293 :NQRFGMPDYFRQ T0305 145 :SEEYGNIIVTLKSTKIHA 1ytn 305 :SGTYGSITVESKMTQQVG T0305 163 :CYTVRRFSIRN 1ytn 328 :MADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVP 1ytn 339 :AGQKTISVPVVHVGNWPDQTAV T0305 208 :EYALPVLTFVRRSSAARM 1ytn 363 :EVTKALASLVDQTAETKR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNS T0305 260 :TVNVLGFLKHIRTQRN 1ytn 426 :QLSVEDMVSQMRVQRN T0305 276 :YLVQTEEQYIFIHDALLEAI 1ytn 443 :IMVQKDEQLDVLIKLAEGQG Number of specific fragments extracted= 12 number of extra gaps= 0 total=3767 Number of alignments=496 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 20 :QHGFSEDFEEVQRCTADM 1ytn 191 :PEARAELSSRLTTLRNTL T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVK 1ytn 212 :TNDPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 80 :DYINANYVDGYNK 1ytn 242 :ADLNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYWPT 1ytn 293 :NQRFGMPDYFRQ T0305 145 :SEEYGNIIVTLKSTKIHA 1ytn 305 :SGTYGSITVESKMTQQVG T0305 163 :CYTVRRFSIRN 1ytn 328 :MADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVP 1ytn 339 :AGQKTISVPVVHVGNWPDQTAV T0305 208 :EYALPVLTFVRRSSAARM 1ytn 363 :EVTKALASLVDQTAETKR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNS T0305 260 :TVNVLGFLKHIRTQRN 1ytn 426 :QLSVEDMVSQMRVQRN T0305 276 :YLVQTEEQYIFIHDALLEA 1ytn 443 :IMVQKDEQLDVLIKLAEGQ Number of specific fragments extracted= 12 number of extra gaps= 0 total=3779 Number of alignments=497 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 82 :INANYVDGYNKAK 1ytn 244 :LNANYIQVGNTRT T0305 97 :IATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTK 1ytn 257 :IACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=3781 Number of alignments=498 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 81 :YINANYVDGYNK 1ytn 243 :DLNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHAC 1ytn 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRN 1ytn 329 :ADMYTLTIRE T0305 178 :KG 1ytn 339 :AG T0305 188 :QNERVVIQYHYTQWPDMGVP 1ytn 341 :QKTISVPVVHVGNWPDQTAV T0305 208 :EYALPVLTFV 1ytn 363 :EVTKALASLV T0305 218 :RRSSAARMPETGPVLVHCSAGVGRTGTY 1ytn 386 :KGSSAVADDSKLRPVIHCRAGVGRTAQL T0305 248 :IDSMLQQIKDKSTVNVLGFLKHIRTQRNYL 1ytn 414 :IGAMCMNDSRNSQLSVEDMVSQMRVQRNGI T0305 278 :VQTEEQY 1ytn 445 :VQKDEQL Number of specific fragments extracted= 9 number of extra gaps= 0 total=3790 Number of alignments=499 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 19 :NQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 193 :ARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNKA 1ytn 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1ytn 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1ytn 324 :GDGIMADMYTLTIR T0305 185 :KGRQNERVVIQYHYTQWPDMGV 1ytn 338 :EAGQKTISVPVVHVGNWPDQTA T0305 208 :EYALPVLTFVRRSSAARM 1ytn 360 :VSSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1ytn 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAILG 1ytn 444 :MVQKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 11 number of extra gaps= 0 total=3801 Number of alignments=500 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 19 :NQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 193 :ARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNKA 1ytn 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1ytn 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1ytn 324 :GDGIMADMYTLTIR T0305 185 :KGRQNERVVIQYHYTQWPDMGVPE 1ytn 338 :EAGQKTISVPVVHVGNWPDQTAVS T0305 210 :ALPVLTFVRRSSAARM 1ytn 362 :SEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1ytn 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAILG 1ytn 444 :MVQKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 11 number of extra gaps= 0 total=3812 Number of alignments=501 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 19 :NQ 1ytn 190 :GP T0305 21 :HGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVK 1ytn 195 :AELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 79 :SD 1ytn 242 :AD T0305 82 :INANYVDGYNK 1ytn 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1ytn 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1ytn 325 :DGIMADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVP 1ytn 339 :AGQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1ytn 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCM T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1ytn 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAI 1ytn 444 :MVQKDEQLDVLIKLAEGQG Number of specific fragments extracted= 13 number of extra gaps= 0 total=3825 Number of alignments=502 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 19 :NQ 1ytn 187 :SP T0305 21 :HGFSEDFEEVQR 1ytn 195 :AELSSRLTTLRN T0305 33 :CTADMN 1ytn 208 :LAPATN T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVK 1ytn 214 :DPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 79 :SD 1ytn 242 :AD T0305 82 :INANYVDGYNKA 1ytn 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1ytn 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1ytn 325 :DGIMADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVP 1ytn 339 :AGQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1ytn 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCM T0305 258 :K 1ytn 420 :N T0305 259 :STVNVLGFLKHIRTQRNY 1ytn 425 :SQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAIL 1ytn 444 :MVQKDEQLDVLIKLAEGQGR Number of specific fragments extracted= 16 number of extra gaps= 0 total=3841 Number of alignments=503 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 29 :EVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 203 :TLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNKA 1ytn 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1ytn 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1ytn 324 :GDGIMADMYTLTIR T0305 185 :KGRQNERVVIQYHYTQWPDMGV 1ytn 338 :EAGQKTISVPVVHVGNWPDQTA T0305 208 :EYALPVLTFVRRSSAARM 1ytn 360 :VSSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1ytn 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDAL 1ytn 444 :MVQKDEQLDVLIKLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=3852 Number of alignments=504 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 212 :TNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNKA 1ytn 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1ytn 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1ytn 324 :GDGIMADMYTLTIR T0305 185 :KGRQNERVVIQYHYTQWPDMGVPE 1ytn 338 :EAGQKTISVPVVHVGNWPDQTAVS T0305 210 :ALPVLTFVRRSSAARM 1ytn 362 :SEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1ytn 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHD 1ytn 444 :MVQKDEQLDVLIK Number of specific fragments extracted= 11 number of extra gaps= 0 total=3863 Number of alignments=505 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVK 1ytn 191 :PEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 79 :SD 1ytn 242 :AD T0305 82 :INANYVDGYNK 1ytn 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1ytn 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1ytn 325 :DGIMADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVP 1ytn 339 :AGQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1ytn 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCM T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1ytn 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDAL 1ytn 444 :MVQKDEQLDVLIKLA Number of specific fragments extracted= 12 number of extra gaps= 0 total=3875 Number of alignments=506 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 4 :SMKQFVKHIGELYS 1ytn 193 :ARAELSSRLTTLRN T0305 32 :RCTADMN 1ytn 207 :TLAPATN T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVK 1ytn 214 :DPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 79 :SD 1ytn 242 :AD T0305 82 :INANYVDGYNKA 1ytn 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1ytn 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1ytn 325 :DGIMADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVP 1ytn 339 :AGQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1ytn 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCM T0305 258 :K 1ytn 420 :N T0305 259 :STVNVLGFLKHIRTQRNY 1ytn 425 :SQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEA 1ytn 444 :MVQKDEQLDVLIKLAEGQ Number of specific fragments extracted= 15 number of extra gaps= 0 total=3890 Number of alignments=507 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set Warning: unaligning (T0305)Q20 because first residue in template chain is (1ytn)V186 T0305 21 :HGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 195 :AELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1ytn 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVT 1ytn 303 :RQSGTYGSITVE T0305 155 :LKSTKIHACYTVRRFSIRNTKV 1ytn 318 :TQQVGLGDGIMADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGV 1ytn 340 :GQKTISVPVVHVGNWPDQTA T0305 208 :EYALPVLTFVRRSSAARM 1ytn 360 :VSSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1ytn 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAILG 1ytn 444 :MVQKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 11 number of extra gaps= 0 total=3901 Number of alignments=508 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 19 :NQHG 1ytn 187 :SPYG T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 197 :LSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1ytn 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKI 1ytn 303 :RQSGTYGSITVESKMTQQ T0305 161 :HACYTVRRFSIRNTKV 1ytn 324 :GDGIMADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGV 1ytn 340 :GQKTISVPVVHVGNWPDQTA T0305 208 :EYALPVLTFVRRSSAARM 1ytn 360 :VSSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1ytn 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAILG 1ytn 444 :MVQKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 12 number of extra gaps= 0 total=3913 Number of alignments=509 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 17 :SNNQ 1ytn 188 :PYGP T0305 21 :HGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 195 :AELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1ytn 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1ytn 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTKV 1ytn 325 :DGIMADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGVP 1ytn 340 :GQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1ytn 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCM T0305 257 :DKSTVNVLGFLKHIRTQRNY 1ytn 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAIL 1ytn 444 :MVQKDEQLDVLIKLAEGQGR Number of specific fragments extracted= 12 number of extra gaps= 0 total=3925 Number of alignments=510 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 19 :NQ 1ytn 187 :SP T0305 21 :HGFSEDFEEVQR 1ytn 195 :AELSSRLTTLRN T0305 33 :CTADMN 1ytn 208 :LAPATN T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVK 1ytn 214 :DPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 79 :SD 1ytn 242 :AD T0305 82 :INANYVDGYNK 1ytn 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIHAC 1ytn 303 :RQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRNT 1ytn 329 :ADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGVP 1ytn 340 :GQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1ytn 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCM T0305 258 :K 1ytn 420 :N T0305 259 :STVNVLGFLKHIRTQRNY 1ytn 425 :SQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEA 1ytn 444 :MVQKDEQLDVLIKLAEGQ Number of specific fragments extracted= 16 number of extra gaps= 0 total=3941 Number of alignments=511 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 51 :HKNRYINILAYDHSRVKLR 1ytn 225 :KLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1ytn 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVT 1ytn 303 :RQSGTYGSITVE T0305 155 :LKSTKIHACYTVRRFSIRNTKV 1ytn 318 :TQQVGLGDGIMADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGV 1ytn 340 :GQKTISVPVVHVGNWPDQTA T0305 208 :EYALPVLTFVRRSSAARM 1ytn 360 :VSSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1ytn 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDAL 1ytn 444 :MVQKDEQLDVLIKLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=3952 Number of alignments=512 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 49 :NKHKNRYINILAYDHSRVKLR 1ytn 223 :GEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1ytn 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKI 1ytn 303 :RQSGTYGSITVESKMTQQ T0305 161 :HACYTVRRFSIRNTKV 1ytn 324 :GDGIMADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGV 1ytn 340 :GQKTISVPVVHVGNWPDQTA T0305 208 :EYALPVLTFVRRSSAARM 1ytn 360 :VSSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1ytn 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDA 1ytn 444 :MVQKDEQLDVLIKL Number of specific fragments extracted= 11 number of extra gaps= 0 total=3963 Number of alignments=513 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 191 :PEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1ytn 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1ytn 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTKV 1ytn 325 :DGIMADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGVP 1ytn 340 :GQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1ytn 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCM T0305 257 :DKSTVNVLGFLKHIRTQRNY 1ytn 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDAL 1ytn 444 :MVQKDEQLDVLIKLA Number of specific fragments extracted= 11 number of extra gaps= 0 total=3974 Number of alignments=514 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 5 :MKQFVKHIGELYS 1ytn 194 :RAELSSRLTTLRN T0305 32 :RCTADMN 1ytn 207 :TLAPATN T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVK 1ytn 214 :DPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 79 :SD 1ytn 242 :AD T0305 82 :INANYVDGYNK 1ytn 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1ytn 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1ytn 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIHAC 1ytn 303 :RQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRNT 1ytn 329 :ADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGVP 1ytn 340 :GQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1ytn 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCM T0305 258 :K 1ytn 420 :N T0305 259 :STVNVLGFLKHIRTQRNY 1ytn 425 :SQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEA 1ytn 444 :MVQKDEQLDVLIKLAEGQ Number of specific fragments extracted= 15 number of extra gaps= 0 total=3989 Number of alignments=515 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set Warning: unaligning (T0305)I12 because first residue in template chain is (1ytn)V186 T0305 13 :GELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 187 :SPYGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1ytn 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1ytn 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYT T0305 181 :KGNPKGRQNERVVIQYHYTQWPDMGVPE 1ytn 334 :LTIREAGQKTISVPVVHVGNWPDQTAVS T0305 209 :YALPVLTFVRRSSAARM 1ytn 364 :VTKALASLVDQTAETKR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1ytn 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDAL 1ytn 444 :MVQKDEQLDVLIKLA T0305 292 :LEAILG 1ytn 463 :RPLLNS Number of specific fragments extracted= 9 number of extra gaps= 0 total=3998 Number of alignments=516 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set Warning: unaligning (T0305)I12 because first residue in template chain is (1ytn)V186 T0305 13 :GELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 187 :SPYGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1ytn 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1ytn 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYT T0305 181 :KGNPKGRQNERVVIQYHYTQWPDMGVPE 1ytn 334 :LTIREAGQKTISVPVVHVGNWPDQTAVS T0305 209 :YALPVLTFVRRSSAARM 1ytn 364 :VTKALASLVDQTAETKR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1ytn 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLE 1ytn 444 :MVQKDEQLDVLIKLAEG T0305 294 :AILG 1ytn 465 :LLNS Number of specific fragments extracted= 9 number of extra gaps= 0 total=4007 Number of alignments=517 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set Warning: unaligning (T0305)N18 because first residue in template chain is (1ytn)V186 T0305 19 :NQHGFSEDFEE 1ytn 187 :SPYGPEARAEL T0305 30 :VQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 204 :LRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1ytn 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACY 1ytn 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLG T0305 165 :TVRRFSIRN 1ytn 330 :DMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVPE 1ytn 339 :AGQKTISVPVVHVGNWPDQTAVS T0305 209 :YALPVLTFVRRSSAARM 1ytn 364 :VTKALASLVDQTAETKR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1ytn 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEA 1ytn 444 :MVQKDEQLDVLIKLAEGQ Number of specific fragments extracted= 10 number of extra gaps= 0 total=4017 Number of alignments=518 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set Warning: unaligning (T0305)Q20 because first residue in template chain is (1ytn)V186 T0305 21 :HGF 1ytn 187 :SPY T0305 24 :SEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 198 :SSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1ytn 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHAC 1ytn 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRN 1ytn 329 :ADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVPE 1ytn 339 :AGQKTISVPVVHVGNWPDQTAVS T0305 210 :ALPVLTFVRRSSAARM 1ytn 362 :SEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCM T0305 258 :K 1ytn 420 :N T0305 259 :STVNVLGFLKHIRTQRNY 1ytn 425 :SQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEA 1ytn 444 :MVQKDEQLDVLIKLAEGQ Number of specific fragments extracted= 11 number of extra gaps= 0 total=4028 Number of alignments=519 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 210 :PATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1ytn 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1ytn 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYT T0305 181 :KGNPKGRQNERVVIQYHYTQWPDMGVPE 1ytn 334 :LTIREAGQKTISVPVVHVGNWPDQTAVS T0305 209 :YALPVLTFVRRSSAARM 1ytn 364 :VTKALASLVDQTAETKR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1ytn 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDAL 1ytn 444 :MVQKDEQLDVLIKLA Number of specific fragments extracted= 8 number of extra gaps= 0 total=4036 Number of alignments=520 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 208 :LAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1ytn 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1ytn 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYT T0305 181 :KGNPKGRQNERVVIQYHYTQWPDMGVPE 1ytn 334 :LTIREAGQKTISVPVVHVGNWPDQTAVS T0305 209 :YALPVLTFVRRSSAARM 1ytn 364 :VTKALASLVDQTAETKR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1ytn 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIH 1ytn 444 :MVQKDEQLDVLI Number of specific fragments extracted= 8 number of extra gaps= 0 total=4044 Number of alignments=521 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1ytn 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACY 1ytn 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLG T0305 165 :TVRRFSIRN 1ytn 330 :DMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVPE 1ytn 339 :AGQKTISVPVVHVGNWPDQTAVS T0305 209 :YALPVLTFVRRSSAARM 1ytn 364 :VTKALASLVDQTAETKR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1ytn 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDAL 1ytn 444 :MVQKDEQLDVLIKLA Number of specific fragments extracted= 9 number of extra gaps= 0 total=4053 Number of alignments=522 # 1ytn read from 1ytn/merged-a2m # found chain 1ytn in template set T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1ytn 197 :LSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1ytn 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHAC 1ytn 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRN 1ytn 329 :ADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVPE 1ytn 339 :AGQKTISVPVVHVGNWPDQTAVS T0305 210 :ALPVLTFVRRSSAARM 1ytn 362 :SEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSM 1ytn 394 :DSKLRPVIHCRAGVGRTAQLIGAMCM T0305 258 :K 1ytn 420 :N T0305 259 :STVNVLGFLKHIRTQRNY 1ytn 425 :SQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLE 1ytn 444 :MVQKDEQLDVLIKLAEG Number of specific fragments extracted= 10 number of extra gaps= 0 total=4063 Number of alignments=523 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1l8gA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1l8gA expands to /projects/compbio/data/pdb/1l8g.pdb.gz 1l8gA:# T0305 read from 1l8gA/merged-a2m # 1l8gA read from 1l8gA/merged-a2m # adding 1l8gA to template set # found chain 1l8gA in template set Warning: unaligning (T0305)A162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l8gA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l8gA)Y152 Warning: unaligning (T0305)A222 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S203 Warning: unaligning (T0305)A223 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S203 Warning: unaligning (T0305)H234 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)C215 Warning: unaligning (T0305)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)C215 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S243 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S243 Warning: unaligning (T0305)V261 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)V244 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)G259 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)Q262 Warning: unaligning (T0305)Q279 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)Q262 T0305 47 :PENKHKNRYINILAYDHSRVKLR 1l8gA 38 :PKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 1l8gA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIH 1l8gA 138 :TNLKLTLISEDIK T0305 164 :YTVRRFSIRNTKV 1l8gA 153 :YTVRQLELENLTT T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFV 1l8gA 166 :QETREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSS 1l8gA 198 :VRES T0305 224 :RMPETGPVLV 1l8gA 204 :LSPEHGPVVV T0305 236 :SAGVGRTGTYIVIDSML 1l8gA 216 :SAGIGRSGTFCLADTCL T0305 253 :QQIKDK 1l8gA 236 :DKRKDP T0305 262 :NVLGFLKHIRTQR 1l8gA 245 :DIKKVLLDMRKFR T0305 277 :L 1l8gA 260 :L T0305 280 :TEEQYIFIHDALLEA 1l8gA 263 :TADQLRFSYLAVIEG Number of specific fragments extracted= 12 number of extra gaps= 6 total=4075 Number of alignments=524 # 1l8gA read from 1l8gA/merged-a2m # found chain 1l8gA in template set Warning: unaligning (T0305)A162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l8gA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l8gA)Y152 Warning: unaligning (T0305)A222 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S203 Warning: unaligning (T0305)A223 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S203 Warning: unaligning (T0305)H234 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)C215 Warning: unaligning (T0305)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)C215 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S243 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S243 Warning: unaligning (T0305)V261 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)V244 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)G259 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)Q262 Warning: unaligning (T0305)Q279 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)Q262 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1l8gA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 1l8gA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIH 1l8gA 138 :TNLKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1l8gA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFV 1l8gA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSS 1l8gA 198 :VRES T0305 224 :RMPETGPVLV 1l8gA 204 :LSPEHGPVVV T0305 236 :SAGVGRTGTYIVIDSML 1l8gA 216 :SAGIGRSGTFCLADTCL T0305 253 :QQIKDK 1l8gA 236 :DKRKDP T0305 262 :NVLGFLKHIRTQR 1l8gA 245 :DIKKVLLDMRKFR T0305 277 :L 1l8gA 260 :L T0305 280 :TEEQYIFIHDALLEA 1l8gA 263 :TADQLRFSYLAVIEG Number of specific fragments extracted= 12 number of extra gaps= 6 total=4087 Number of alignments=525 # 1l8gA read from 1l8gA/merged-a2m # found chain 1l8gA in template set Warning: unaligning (T0305)V9 because first residue in template chain is (1l8gA)E2 Warning: unaligning (T0305)A162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l8gA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l8gA)Y152 Warning: unaligning (T0305)H234 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)C215 Warning: unaligning (T0305)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)C215 Warning: unaligning (T0305)V261 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)V244 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)G259 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)Q262 Warning: unaligning (T0305)Q279 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)Q262 T0305 10 :KHIGELYSNNQHGFSEDFEEVQRCTADM 1l8gA 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1l8gA 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1l8gA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1l8gA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1l8gA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1l8gA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1l8gA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLV 1l8gA 204 :LSPEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1l8gA 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 262 :NVLGFLKHIRTQR 1l8gA 245 :DIKKVLLDMRKFR T0305 277 :L 1l8gA 260 :L T0305 280 :TEEQYIFIHDALLEAILG 1l8gA 263 :TADQLRFSYLAVIEGAKF Number of specific fragments extracted= 12 number of extra gaps= 5 total=4099 Number of alignments=526 # 1l8gA read from 1l8gA/merged-a2m # found chain 1l8gA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1l8gA)E2 Warning: unaligning (T0305)A162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l8gA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l8gA)Y152 Warning: unaligning (T0305)H234 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)C215 Warning: unaligning (T0305)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)C215 Warning: unaligning (T0305)V261 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)V244 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)G259 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)Q262 Warning: unaligning (T0305)Q279 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)Q262 T0305 8 :FVKHIGEL 1l8gA 3 :MEKEFEQI T0305 18 :NNQHGFSEDFEEVQRCTADM 1l8gA 11 :DKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1l8gA 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1l8gA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1l8gA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1l8gA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1l8gA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1l8gA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLV 1l8gA 204 :LSPEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1l8gA 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 262 :NVLGFLKHIRTQR 1l8gA 245 :DIKKVLLDMRKFR T0305 277 :L 1l8gA 260 :L T0305 280 :TEEQYIFIHDALLEAILG 1l8gA 263 :TADQLRFSYLAVIEGAKF Number of specific fragments extracted= 13 number of extra gaps= 5 total=4112 Number of alignments=527 # 1l8gA read from 1l8gA/merged-a2m # found chain 1l8gA in template set Warning: unaligning (T0305)A162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l8gA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l8gA)Y152 Warning: unaligning (T0305)H234 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)C215 Warning: unaligning (T0305)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)C215 Warning: unaligning (T0305)V261 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)V244 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)G259 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)Q262 Warning: unaligning (T0305)Q279 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)Q262 T0305 13 :GELYSNNQHGFSEDFEEVQRCTADM 1l8gA 6 :EFEQIDKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1l8gA 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1l8gA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1l8gA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1l8gA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1l8gA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1l8gA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLV 1l8gA 204 :LSPEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1l8gA 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 262 :NVLGFLKHIRTQR 1l8gA 245 :DIKKVLLDMRKFR T0305 277 :L 1l8gA 260 :L T0305 280 :TEEQYIFIHDALLEAIL 1l8gA 263 :TADQLRFSYLAVIEGAK Number of specific fragments extracted= 12 number of extra gaps= 5 total=4124 Number of alignments=528 # 1l8gA read from 1l8gA/merged-a2m # found chain 1l8gA in template set Warning: unaligning (T0305)A162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l8gA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l8gA)Y152 Warning: unaligning (T0305)H234 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)C215 Warning: unaligning (T0305)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)C215 Warning: unaligning (T0305)V261 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)V244 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)G259 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)Q262 Warning: unaligning (T0305)Q279 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)Q262 T0305 18 :NNQHGFSEDFEEVQRCTADM 1l8gA 11 :DKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1l8gA 31 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1l8gA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1l8gA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1l8gA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1l8gA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1l8gA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLV 1l8gA 204 :LSPEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1l8gA 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 262 :NVLGFLKHIRTQR 1l8gA 245 :DIKKVLLDMRKFR T0305 277 :L 1l8gA 260 :L T0305 280 :TEEQYIFIHDALLEAI 1l8gA 263 :TADQLRFSYLAVIEGA Number of specific fragments extracted= 12 number of extra gaps= 5 total=4136 Number of alignments=529 # 1l8gA read from 1l8gA/merged-a2m # found chain 1l8gA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1l8gA)E2 Warning: unaligning (T0305)A162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l8gA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l8gA)Y152 Warning: unaligning (T0305)R224 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S203 Warning: unaligning (T0305)M225 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S203 Warning: unaligning (T0305)H234 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)C215 Warning: unaligning (T0305)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)C215 Warning: unaligning (T0305)V261 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)V244 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)G259 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)Q262 Warning: unaligning (T0305)Q279 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)Q262 T0305 8 :FVKHIGELYSNNQ 1l8gA 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1l8gA 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1l8gA 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1l8gA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1l8gA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1l8gA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1l8gA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1l8gA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 226 :PETGPVLV 1l8gA 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1l8gA 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 262 :NVLGFLKHIRTQR 1l8gA 245 :DIKKVLLDMRKFR T0305 277 :L 1l8gA 260 :L T0305 280 :TEEQYIFIHDALLEAILG 1l8gA 263 :TADQLRFSYLAVIEGAKF Number of specific fragments extracted= 13 number of extra gaps= 6 total=4149 Number of alignments=530 # 1l8gA read from 1l8gA/merged-a2m # found chain 1l8gA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1l8gA)E2 Warning: unaligning (T0305)A162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l8gA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l8gA)Y152 Warning: unaligning (T0305)R224 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S203 Warning: unaligning (T0305)M225 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S203 Warning: unaligning (T0305)H234 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)C215 Warning: unaligning (T0305)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)C215 Warning: unaligning (T0305)V261 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)V244 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)G259 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)Q262 Warning: unaligning (T0305)Q279 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)Q262 T0305 8 :FVKHIGELYSNNQ 1l8gA 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1l8gA 16 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1l8gA 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1l8gA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1l8gA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1l8gA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1l8gA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1l8gA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 226 :PETGPVLV 1l8gA 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1l8gA 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 262 :NVLGFLKHIRTQR 1l8gA 245 :DIKKVLLDMRKFR T0305 277 :L 1l8gA 260 :L T0305 280 :TEEQYIFIHDALLEAILG 1l8gA 263 :TADQLRFSYLAVIEGAKF Number of specific fragments extracted= 13 number of extra gaps= 6 total=4162 Number of alignments=531 # 1l8gA read from 1l8gA/merged-a2m # found chain 1l8gA in template set Warning: unaligning (T0305)A162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l8gA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l8gA)Y152 Warning: unaligning (T0305)R224 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S203 Warning: unaligning (T0305)M225 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S203 Warning: unaligning (T0305)H234 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)C215 Warning: unaligning (T0305)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)C215 Warning: unaligning (T0305)V261 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)V244 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)G259 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)Q262 Warning: unaligning (T0305)Q279 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)Q262 T0305 13 :GELYSNNQHGFSEDFEEVQ 1l8gA 6 :EFEQIDKSGSWAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1l8gA 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1l8gA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1l8gA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1l8gA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1l8gA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1l8gA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 226 :PETGPVLV 1l8gA 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1l8gA 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 262 :NVLGFLKHIRTQR 1l8gA 245 :DIKKVLLDMRKFR T0305 277 :L 1l8gA 260 :L T0305 280 :TEEQYIFIHDALLE 1l8gA 263 :TADQLRFSYLAVIE Number of specific fragments extracted= 12 number of extra gaps= 6 total=4174 Number of alignments=532 # 1l8gA read from 1l8gA/merged-a2m # found chain 1l8gA in template set Warning: unaligning (T0305)A162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l8gA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l8gA)Y152 Warning: unaligning (T0305)R224 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S203 Warning: unaligning (T0305)M225 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S203 Warning: unaligning (T0305)H234 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)C215 Warning: unaligning (T0305)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)C215 Warning: unaligning (T0305)V261 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)V244 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)G259 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)Q262 Warning: unaligning (T0305)Q279 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)Q262 T0305 15 :LY 1l8gA 10 :ID T0305 19 :NQHGFSEDFEEVQ 1l8gA 12 :KSGSWAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1l8gA 25 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1l8gA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1l8gA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1l8gA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1l8gA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1l8gA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 226 :PETGPVLV 1l8gA 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDKST 1l8gA 216 :SAGIGRSGTFCLADTCLLLMDKRKD T0305 262 :NVLGFLKHIRTQR 1l8gA 245 :DIKKVLLDMRKFR T0305 277 :L 1l8gA 260 :L T0305 280 :TEEQYIFIHDALLEA 1l8gA 263 :TADQLRFSYLAVIEG Number of specific fragments extracted= 13 number of extra gaps= 6 total=4187 Number of alignments=533 # 1l8gA read from 1l8gA/merged-a2m # found chain 1l8gA in template set Warning: unaligning (T0305)H11 because first residue in template chain is (1l8gA)E2 Warning: unaligning (T0305)A162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l8gA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l8gA)Y152 Warning: unaligning (T0305)R224 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S203 Warning: unaligning (T0305)M225 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S203 Warning: unaligning (T0305)H234 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)C215 Warning: unaligning (T0305)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)C215 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S243 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S243 Warning: unaligning (T0305)V261 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)V244 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)G259 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)Q262 Warning: unaligning (T0305)Q279 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)Q262 T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1l8gA 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1l8gA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIH 1l8gA 132 :EMIFEDTNLKLTLISEDIK T0305 164 :YTVRRFSIRN 1l8gA 153 :YTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1l8gA 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 226 :PETGPVLV 1l8gA 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDK 1l8gA 216 :SAGIGRSGTFCLADTCLLLMDKR T0305 262 :NVLGFLKHIRTQR 1l8gA 245 :DIKKVLLDMRKFR T0305 277 :L 1l8gA 260 :L T0305 280 :TEEQYIFIHDALLEAILG 1l8gA 263 :TADQLRFSYLAVIEGAKF Number of specific fragments extracted= 10 number of extra gaps= 6 total=4197 Number of alignments=534 # 1l8gA read from 1l8gA/merged-a2m # found chain 1l8gA in template set Warning: unaligning (T0305)H11 because first residue in template chain is (1l8gA)E2 Warning: unaligning (T0305)A162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l8gA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l8gA)Y152 Warning: unaligning (T0305)R224 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S203 Warning: unaligning (T0305)M225 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S203 Warning: unaligning (T0305)H234 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)C215 Warning: unaligning (T0305)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)C215 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S243 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S243 Warning: unaligning (T0305)V261 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)V244 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)G259 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)Q262 Warning: unaligning (T0305)Q279 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)Q262 T0305 12 :IGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1l8gA 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1l8gA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIH 1l8gA 132 :EMIFEDTNLKLTLISEDIK T0305 164 :YTVRRFSIRN 1l8gA 153 :YTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1l8gA 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 226 :PETGPVLV 1l8gA 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDK 1l8gA 216 :SAGIGRSGTFCLADTCLLLMDKR T0305 262 :NVLGFLKHIRTQR 1l8gA 245 :DIKKVLLDMRKFR T0305 277 :L 1l8gA 260 :L T0305 280 :TEEQYIFIHDALLEAILG 1l8gA 263 :TADQLRFSYLAVIEGAKF Number of specific fragments extracted= 10 number of extra gaps= 6 total=4207 Number of alignments=535 # 1l8gA read from 1l8gA/merged-a2m # found chain 1l8gA in template set Warning: unaligning (T0305)A162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l8gA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l8gA)Y152 Warning: unaligning (T0305)R224 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S203 Warning: unaligning (T0305)M225 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S203 Warning: unaligning (T0305)H234 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)C215 Warning: unaligning (T0305)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)C215 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S243 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S243 Warning: unaligning (T0305)V261 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)V244 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)G259 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)Q262 Warning: unaligning (T0305)Q279 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)Q262 T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1l8gA 13 :SGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1l8gA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIH 1l8gA 132 :EMIFEDTNLKLTLISEDIK T0305 164 :YTVRRFSIRN 1l8gA 153 :YTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1l8gA 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 226 :PETGPVLV 1l8gA 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDK 1l8gA 216 :SAGIGRSGTFCLADTCLLLMDKR T0305 262 :NVLGFLKHIRTQR 1l8gA 245 :DIKKVLLDMRKFR T0305 277 :L 1l8gA 260 :L T0305 280 :TEEQYIFIHDALLE 1l8gA 263 :TADQLRFSYLAVIE Number of specific fragments extracted= 10 number of extra gaps= 6 total=4217 Number of alignments=536 # 1l8gA read from 1l8gA/merged-a2m # found chain 1l8gA in template set Warning: unaligning (T0305)A162 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1l8gA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1l8gA)Y152 Warning: unaligning (T0305)R224 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S203 Warning: unaligning (T0305)M225 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S203 Warning: unaligning (T0305)H234 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)C215 Warning: unaligning (T0305)C235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)C215 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)S243 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)S243 Warning: unaligning (T0305)V261 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)V244 Warning: unaligning (T0305)N275 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1l8gA)G259 Warning: unaligning (T0305)Y276 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1l8gA)G259 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE in next template residue (1l8gA)Q262 Warning: unaligning (T0305)Q279 because of BadResidue code BAD_PEPTIDE at template residue (1l8gA)Q262 T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1l8gA 8 :EQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1l8gA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIH 1l8gA 132 :EMIFEDTNLKLTLISEDIK T0305 164 :YTVRRFSIRN 1l8gA 153 :YTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1l8gA 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 226 :PETGPVLV 1l8gA 206 :PEHGPVVV T0305 236 :SAGVGRTGTYIVIDSMLQQIKDK 1l8gA 216 :SAGIGRSGTFCLADTCLLLMDKR T0305 262 :NVLGFLKHIRTQR 1l8gA 245 :DIKKVLLDMRKFR T0305 277 :L 1l8gA 260 :L T0305 280 :TEEQYIFIHDALLE 1l8gA 263 :TADQLRFSYLAVIE Number of specific fragments extracted= 10 number of extra gaps= 6 total=4227 Number of alignments=537 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1larA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0305 read from 1larA/merged-a2m # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)C33 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1larA)S1628 Warning: unaligning (T0305)I39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1larA)S1628 T0305 1 :YFQSMKQFVK 1larA 1307 :MITDLADNIE T0305 11 :HIGELYSNNQH 1larA 1381 :NANYIDGYRKQ T0305 22 :GFSEDFEEVQR 1larA 1612 :AMELEFKLLAS T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 1larA 1629 :RFISANLPCNKFKNRLVNIMPYELTRVCLQPIRGVE T0305 78 :HSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNT 1larA 1665 :GSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDA T0305 177 :KKG 1larA 1762 :RDG T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMP 1larA 1765 :QSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQ T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1805 :QDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS Number of specific fragments extracted= 8 number of extra gaps= 0 total=4235 Number of alignments=538 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)C33 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1larA)S1628 Warning: unaligning (T0305)I39 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1larA)S1628 T0305 18 :NNQHGFSEDFEEVQR 1larA 1608 :ESVTAMELEFKLLAS T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKD 1larA 1629 :RFISANLPCNKFKNRLVNIMPYELTRVCLQPIRGVE T0305 78 :HSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNT 1larA 1665 :GSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDA T0305 177 :KKG 1larA 1762 :RDG T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMP 1larA 1765 :QSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQ T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1larA 1805 :QDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYL Number of specific fragments extracted= 6 number of extra gaps= 0 total=4241 Number of alignments=539 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1larA)M1307 T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQR 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESIDP T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1larA 1336 :GQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSID T0305 75 :DSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNT 1larA 1373 :GVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKS T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1473 :GSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATC Number of specific fragments extracted= 4 number of extra gaps= 0 total=4245 Number of alignments=540 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1larA)M1307 T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQR 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESIDP T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1larA 1336 :GQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSID T0305 75 :DSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNT 1larA 1373 :GVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKS T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1473 :GSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATC Number of specific fragments extracted= 4 number of extra gaps= 0 total=4249 Number of alignments=541 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 6 :KQFVKHIGELYSNNQHGFSEDFEEVQR 1larA 1309 :TDLADNIERLKANDGLKFSQEYESIDP T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1larA 1336 :GQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSID T0305 75 :DSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNT 1larA 1373 :GVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKS T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1larA 1473 :GSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAAT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4253 Number of alignments=542 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 6 :KQFVKHIGELYSNNQHGFSEDFEEVQR 1larA 1309 :TDLADNIERLKANDGLKFSQEYESIDP T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1larA 1336 :GQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSID T0305 75 :DSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNT 1larA 1373 :GVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKS T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1larA 1473 :GSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAAT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4257 Number of alignments=543 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1larA)M1307 T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQRCT 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESIDPGQ T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 1larA 1338 :QFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDG T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKK 1larA 1374 :VPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSE T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 1larA 1477 :KRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACN T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1804 :GQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS Number of specific fragments extracted= 5 number of extra gaps= 0 total=4262 Number of alignments=544 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 1 :Y 1larA 1307 :M T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQRCT 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESIDPGQ T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 1larA 1338 :QFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDG T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKK 1larA 1374 :VPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSE T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1larA 1763 :DGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1804 :GQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS Number of specific fragments extracted= 6 number of extra gaps= 0 total=4268 Number of alignments=545 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQRCT 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESIDPGQ T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 1larA 1338 :QFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDG T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKK 1larA 1374 :VPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSE T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1larA 1477 :KRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAAT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4272 Number of alignments=546 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 6 :KQFVKHIGELYSNNQHGFSEDFEEVQRCT 1larA 1309 :TDLADNIERLKANDGLKFSQEYESIDPGQ T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPG 1larA 1338 :QFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDG T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKK 1larA 1374 :VPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSE T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1larA 1477 :KRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAAT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4276 Number of alignments=547 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQ 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESID T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1335 :PGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNT 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKS T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1larA 1473 :GSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEA Number of specific fragments extracted= 4 number of extra gaps= 0 total=4280 Number of alignments=548 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQR 1larA 1311 :LADNIERLKANDGLKFSQEYESIDP T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGK 1larA 1336 :GQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGV T0305 77 :KHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1375 :PGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1larA 1472 :SGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAA Number of specific fragments extracted= 4 number of extra gaps= 0 total=4284 Number of alignments=549 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1larA)M1307 T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQ 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESID T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1335 :PGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1larA 1472 :SGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMK T0305 257 :DKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1835 :YEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS Number of specific fragments extracted= 5 number of extra gaps= 0 total=4289 Number of alignments=550 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1larA)M1307 T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQ 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESID T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1335 :PGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIK 1larA 1472 :SGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMK T0305 257 :DKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1835 :YEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS Number of specific fragments extracted= 5 number of extra gaps= 0 total=4294 Number of alignments=551 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1larA)M1307 T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEV 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESI T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1334 :DPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALH T0305 257 :DKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1835 :YEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS Number of specific fragments extracted= 4 number of extra gaps= 0 total=4298 Number of alignments=552 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1larA)M1307 T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQ 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESID T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1335 :PGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALH T0305 173 :NTKVKKGQ 1larA 1753 :LREFKVTD T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1larA 1761 :ARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1804 :GQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS Number of specific fragments extracted= 6 number of extra gaps= 0 total=4304 Number of alignments=553 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQ 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESID T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1335 :PGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1472 :SGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATC Number of specific fragments extracted= 4 number of extra gaps= 0 total=4308 Number of alignments=554 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 7 :QFVKHIGELYSNNQHGFSEDFEEVQ 1larA 1310 :DLADNIERLKANDGLKFSQEYESID T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1335 :PGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1larA 1472 :SGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAAT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4312 Number of alignments=555 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEV 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESI T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1334 :DPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1larA 1472 :SGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAA Number of specific fragments extracted= 4 number of extra gaps= 0 total=4316 Number of alignments=556 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEVQ 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESID T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1335 :PGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1larA 1472 :SGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAAT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4320 Number of alignments=557 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1larA)M1307 T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEV 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESI T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1334 :DPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALH T0305 173 :NTK 1larA 1760 :DAR T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1larA 1763 :DGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1804 :GQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS Number of specific fragments extracted= 6 number of extra gaps= 0 total=4326 Number of alignments=558 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1larA)M1307 T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEV 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESI T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1334 :DPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALH T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1larA 1760 :DARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1804 :GQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS Number of specific fragments extracted= 5 number of extra gaps= 0 total=4331 Number of alignments=559 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1larA)M1307 T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEV 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESI T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1334 :DPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALH T0305 173 :N 1larA 1760 :D T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1larA 1761 :ARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1804 :GQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS Number of specific fragments extracted= 6 number of extra gaps= 0 total=4337 Number of alignments=560 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)S4 because first residue in template chain is (1larA)M1307 T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEV 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESI T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1334 :DPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIR 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALH T0305 176 :VKKGQ 1larA 1756 :FKVTD T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1larA 1761 :ARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1804 :GQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS Number of specific fragments extracted= 6 number of extra gaps= 0 total=4343 Number of alignments=561 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEV 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESI T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1334 :DPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSG T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1474 :SSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATC Number of specific fragments extracted= 4 number of extra gaps= 0 total=4347 Number of alignments=562 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 6 :KQFVKHIGELYSNNQHGFSEDFEEV 1larA 1309 :TDLADNIERLKANDGLKFSQEYESI T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1334 :DPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSG T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1larA 1474 :SSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAA Number of specific fragments extracted= 4 number of extra gaps= 0 total=4351 Number of alignments=563 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEV 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESI T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1334 :DPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSG T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1larA 1474 :SSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAA Number of specific fragments extracted= 4 number of extra gaps= 0 total=4355 Number of alignments=564 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 5 :MKQFVKHIGELYSNNQHGFSEDFEEV 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESI T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1larA 1334 :DPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPG T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTK 1larA 1377 :SDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSG T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1larA 1474 :SSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAAT Number of specific fragments extracted= 4 number of extra gaps= 0 total=4359 Number of alignments=565 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1larA)M1307 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1370 :SIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQ 1larA 1472 :SGSS T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1larA 1765 :QSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1804 :GQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS Number of specific fragments extracted= 5 number of extra gaps= 0 total=4364 Number of alignments=566 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1larA)M1307 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1370 :SIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQ 1larA 1472 :SGSS T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1larA 1765 :QSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1804 :GQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS Number of specific fragments extracted= 5 number of extra gaps= 0 total=4369 Number of alignments=567 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1larA)M1307 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1370 :SIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQ 1larA 1472 :SGSS T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1larA 1765 :QSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1804 :GQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS Number of specific fragments extracted= 5 number of extra gaps= 0 total=4374 Number of alignments=568 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1larA)M1307 T0305 8 :FVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1larA 1308 :ITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1370 :SIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQ 1larA 1472 :SGSS T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1larA 1765 :QSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1larA 1804 :GQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS Number of specific fragments extracted= 5 number of extra gaps= 0 total=4379 Number of alignments=569 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1larA 1322 :DGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1370 :SIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1larA 1472 :SGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4382 Number of alignments=570 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1larA 1317 :RLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1370 :SIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1larA 1472 :SGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4385 Number of alignments=571 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 9 :VKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1larA 1309 :TDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1370 :SIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1larA 1472 :SGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4388 Number of alignments=572 # 1larA read from 1larA/merged-a2m # found chain 1larA in template set T0305 11 :HIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1larA 1311 :LADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILT T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1larA 1370 :SIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHK T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1larA 1472 :SGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAA Number of specific fragments extracted= 3 number of extra gaps= 0 total=4391 Number of alignments=573 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yptA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1yptA expands to /projects/compbio/data/pdb/1ypt.pdb.gz 1yptA:# T0305 read from 1yptA/merged-a2m # 1yptA read from 1yptA/merged-a2m # adding 1yptA to template set # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1yptA 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA T0305 81 :YINANYVDGYN 1yptA 243 :DLNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEK 1yptA 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEI T0305 132 :GRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKK 1yptA 294 :QRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIREAG T0305 188 :QNERVVIQYHYTQWPDM 1yptA 341 :QKTISVPVVHVGNWPDQ T0305 205 :GVPEYALPVLTFVRRSSAARM 1yptA 359 :AVSSEVTKALASLVDQTAETK T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDSR T0305 258 :KSTVNVLGFLKHIRTQRNY 1yptA 424 :NSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDALLEAILG 1yptA 446 :QKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 9 number of extra gaps= 1 total=4400 Number of alignments=574 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1yptA 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA T0305 81 :YINANYVDGYN 1yptA 243 :DLNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEK 1yptA 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEI T0305 132 :GRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKK 1yptA 294 :QRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIREAG T0305 188 :QNERVVIQYHYTQWPDM 1yptA 341 :QKTISVPVVHVGNWPDQ T0305 205 :GVPEYALPVLTFVRRSSAARM 1yptA 359 :AVSSEVTKALASLVDQTAETK T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDSR T0305 258 :KSTVNVLGFLKHIRTQRNY 1yptA 424 :NSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDALLEAILG 1yptA 446 :QKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 9 number of extra gaps= 1 total=4409 Number of alignments=575 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1yptA 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA T0305 81 :YINANYVDGYN 1yptA 243 :DLNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEK 1yptA 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEI T0305 132 :GRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKK 1yptA 294 :QRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIREAG T0305 188 :QNERVVIQYHYTQWPDM 1yptA 341 :QKTISVPVVHVGNWPDQ T0305 205 :GVPEYALPVLTFVRRSSAARM 1yptA 359 :AVSSEVTKALASLVDQTAETK T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDSR T0305 258 :KSTVNVLGFLKHIRTQRNY 1yptA 424 :NSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDALLEAI 1yptA 446 :QKDEQLDVLIKLAEGQG Number of specific fragments extracted= 9 number of extra gaps= 1 total=4418 Number of alignments=576 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 19 :NQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1yptA 193 :ARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA T0305 81 :YINANYVDGYN 1yptA 243 :DLNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEK 1yptA 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEI T0305 132 :GRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKK 1yptA 294 :QRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIREAG T0305 188 :QNERVVIQYHYTQWPDM 1yptA 341 :QKTISVPVVHVGNWPDQ T0305 205 :GVPEYALPVLTFVRRSSAARM 1yptA 359 :AVSSEVTKALASLVDQTAETK T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDSR T0305 258 :KSTVNVLGFLKHIRTQRNY 1yptA 424 :NSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDALLEAI 1yptA 446 :QKDEQLDVLIKLAEGQG Number of specific fragments extracted= 9 number of extra gaps= 1 total=4427 Number of alignments=577 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)Q20 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 21 :HGFSEDFEEVQRCTADM 1yptA 192 :EARAELSSRLTTLRNTL T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVK 1yptA 212 :TNDPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 80 :DYINANYVDGYNK 1yptA 242 :ADLNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYWPT 1yptA 293 :NQRFGMPDYFRQ T0305 145 :SEEYGNIIVTLKSTKIHA 1yptA 305 :SGTYGSITVESKMTQQVG T0305 163 :CYTVRRFSIRN 1yptA 328 :MADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVP 1yptA 339 :AGQKTISVPVVHVGNWPDQTAV T0305 208 :EYALPVLTFVRRSSAARM 1yptA 363 :EVTKALASLVDQTAETKR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNS T0305 260 :TVNVLGFLKHIRTQRN 1yptA 426 :QLSVEDMVSQMRVQRN T0305 276 :Y 1yptA 443 :I T0305 279 :QTEEQYIFIHDALLEAI 1yptA 446 :QKDEQLDVLIKLAEGQG Number of specific fragments extracted= 13 number of extra gaps= 1 total=4440 Number of alignments=578 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)Q20 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 21 :HGFSEDFEEVQRCTADM 1yptA 192 :EARAELSSRLTTLRNTL T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVK 1yptA 212 :TNDPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 80 :DYINANYVDGYNK 1yptA 242 :ADLNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYWPT 1yptA 293 :NQRFGMPDYFRQ T0305 145 :SEEYGNIIVTLKSTKIHA 1yptA 305 :SGTYGSITVESKMTQQVG T0305 163 :CYTVRRFSIRN 1yptA 328 :MADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVP 1yptA 339 :AGQKTISVPVVHVGNWPDQTAV T0305 208 :EYALPVLTFVRRSSAARM 1yptA 363 :EVTKALASLVDQTAETKR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKD 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNS T0305 260 :TVNVLGFLKHIRTQRN 1yptA 426 :QLSVEDMVSQMRVQRN T0305 276 :Y 1yptA 443 :I T0305 279 :QTEEQYIFIHDALLEA 1yptA 446 :QKDEQLDVLIKLAEGQ Number of specific fragments extracted= 13 number of extra gaps= 1 total=4453 Number of alignments=579 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set T0305 82 :INANYVDGYNKAK 1yptA 244 :LNANYIQVGNTRT T0305 97 :IATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTK 1yptA 257 :IACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=4455 Number of alignments=580 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 81 :YINANYVDGYNK 1yptA 243 :DLNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHAC 1yptA 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRN 1yptA 329 :ADMYTLTIRE T0305 178 :KG 1yptA 339 :AG T0305 188 :QNERVVIQYHYTQWPDMGVP 1yptA 341 :QKTISVPVVHVGNWPDQTAV T0305 208 :EYALPVLTFV 1yptA 363 :EVTKALASLV T0305 218 :RRSSAARMPETGPVLVHCSAGVGRTGTY 1yptA 386 :KGSSAVADDSKLRPVIHCRAGVGRTAQL T0305 248 :IDSMLQQIKDKSTVNVLGFLKHIRTQRNYL 1yptA 414 :IGAMCMNDSRNSQLSVEDMVSQMRVQRNGI T0305 279 :QTEEQY 1yptA 446 :QKDEQL Number of specific fragments extracted= 9 number of extra gaps= 1 total=4464 Number of alignments=581 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 19 :NQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 193 :ARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNKA 1yptA 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yptA 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yptA 324 :GDGIMADMYTLTIR T0305 185 :KGRQNERVVIQYHYTQWPDMGV 1yptA 338 :EAGQKTISVPVVHVGNWPDQTA T0305 208 :EYALPVLTFVRRSSAARM 1yptA 360 :VSSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yptA 423 :RNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDALLEAILG 1yptA 446 :QKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 11 number of extra gaps= 1 total=4475 Number of alignments=582 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 19 :NQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 193 :ARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNKA 1yptA 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yptA 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yptA 324 :GDGIMADMYTLTIR T0305 185 :KGRQNERVVIQYHYTQWPDMGVPE 1yptA 338 :EAGQKTISVPVVHVGNWPDQTAVS T0305 210 :ALPVLTFVRRSSAARM 1yptA 362 :SEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yptA 423 :RNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDALLEAILG 1yptA 446 :QKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 11 number of extra gaps= 1 total=4486 Number of alignments=583 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVK 1yptA 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 79 :SD 1yptA 242 :AD T0305 82 :INANYVDGYNK 1yptA 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yptA 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yptA 325 :DGIMADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVP 1yptA 339 :AGQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1yptA 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yptA 422 :SRNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQY 1yptA 446 :QKDEQL T0305 289 :DALLEAILG 1yptA 452 :DVLIKLAEG Number of specific fragments extracted= 13 number of extra gaps= 1 total=4499 Number of alignments=584 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 18 :NNQHGFSEDFEEVQR 1yptA 192 :EARAELSSRLTTLRN T0305 33 :CTADMN 1yptA 208 :LAPATN T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVK 1yptA 214 :DPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 79 :SD 1yptA 242 :AD T0305 82 :INANYVDGYNK 1yptA 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yptA 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yptA 325 :DGIMADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVP 1yptA 339 :AGQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1yptA 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMN T0305 258 :K 1yptA 421 :D T0305 259 :STVNVLGFLKHIRTQRNY 1yptA 425 :SQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYI 1yptA 446 :QKDEQLD T0305 290 :ALLEAILG 1yptA 453 :VLIKLAEG Number of specific fragments extracted= 16 number of extra gaps= 1 total=4515 Number of alignments=585 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 29 :EVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 203 :TLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNKA 1yptA 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yptA 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yptA 324 :GDGIMADMYTLTIR T0305 185 :KGRQNERVVIQYHYTQWPDMGV 1yptA 338 :EAGQKTISVPVVHVGNWPDQTA T0305 208 :EYALPVLTFVRRSSAARM 1yptA 360 :VSSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yptA 423 :RNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDAL 1yptA 446 :QKDEQLDVLIKLA Number of specific fragments extracted= 11 number of extra gaps= 1 total=4526 Number of alignments=586 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 212 :TNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNKA 1yptA 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yptA 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yptA 324 :GDGIMADMYTLTIR T0305 185 :KGRQNERVVIQYHYTQWPDMGVPE 1yptA 338 :EAGQKTISVPVVHVGNWPDQTAVS T0305 210 :ALPVLTFVRRSSAARM 1yptA 362 :SEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yptA 423 :RNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHD 1yptA 446 :QKDEQLDVLIK Number of specific fragments extracted= 11 number of extra gaps= 1 total=4537 Number of alignments=587 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVK 1yptA 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 79 :SD 1yptA 242 :AD T0305 82 :INANYVDGYNK 1yptA 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yptA 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yptA 325 :DGIMADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVP 1yptA 339 :AGQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1yptA 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yptA 422 :SRNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDA 1yptA 446 :QKDEQLDVLIKL Number of specific fragments extracted= 12 number of extra gaps= 1 total=4549 Number of alignments=588 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)F2 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 3 :QSMKQFVKHIGELYS 1yptA 192 :EARAELSSRLTTLRN T0305 32 :RCTADMN 1yptA 207 :TLAPATN T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVK 1yptA 214 :DPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 79 :SD 1yptA 242 :AD T0305 82 :INANYVDGYNK 1yptA 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yptA 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yptA 325 :DGIMADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVP 1yptA 339 :AGQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1yptA 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMN T0305 258 :K 1yptA 421 :D T0305 259 :STVNVLGFLKHIRTQRNY 1yptA 425 :SQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDAL 1yptA 446 :QKDEQLDVLIKLA Number of specific fragments extracted= 15 number of extra gaps= 1 total=4564 Number of alignments=589 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 21 :HGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 195 :AELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1yptA 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVT 1yptA 303 :RQSGTYGSITVE T0305 155 :LKSTKIHACYTVRRFSIRNTKV 1yptA 318 :TQQVGLGDGIMADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGV 1yptA 340 :GQKTISVPVVHVGNWPDQTA T0305 208 :EYALPVLTFVRRSSAARM 1yptA 360 :VSSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yptA 423 :RNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDALLEAILG 1yptA 446 :QKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 11 number of extra gaps= 1 total=4575 Number of alignments=590 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 23 :FSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 197 :LSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1yptA 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKI 1yptA 303 :RQSGTYGSITVESKMTQQ T0305 161 :HACYTVRRFSIRNTKV 1yptA 324 :GDGIMADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGV 1yptA 340 :GQKTISVPVVHVGNWPDQTA T0305 208 :EYALPVLTFVRRSSAARM 1yptA 360 :VSSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yptA 423 :RNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDALLEAILG 1yptA 446 :QKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 11 number of extra gaps= 1 total=4586 Number of alignments=591 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1yptA 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yptA 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTKV 1yptA 325 :DGIMADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGVP 1yptA 340 :GQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1yptA 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMN T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yptA 422 :SRNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQY 1yptA 446 :QKDEQL T0305 289 :DALLEAILG 1yptA 452 :DVLIKLAEG Number of specific fragments extracted= 12 number of extra gaps= 1 total=4598 Number of alignments=592 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 18 :NNQHGFSEDFEEVQR 1yptA 192 :EARAELSSRLTTLRN T0305 33 :CTADMN 1yptA 208 :LAPATN T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVK 1yptA 214 :DPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 72 :PG 1yptA 242 :AD T0305 82 :INANYVDGYNK 1yptA 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIHAC 1yptA 303 :RQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRNT 1yptA 329 :ADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGVP 1yptA 340 :GQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1yptA 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMN T0305 258 :K 1yptA 421 :D T0305 259 :STVNVLGFLKHIRTQRNY 1yptA 425 :SQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDA 1yptA 446 :QKDEQLDVLIKL T0305 295 :ILG 1yptA 458 :AEG Number of specific fragments extracted= 16 number of extra gaps= 1 total=4614 Number of alignments=593 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 51 :HKNRYINILAYDHSRVKLR 1yptA 225 :KLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1yptA 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVT 1yptA 303 :RQSGTYGSITVE T0305 155 :LKSTKIHACYTVRRFSIRNTKV 1yptA 318 :TQQVGLGDGIMADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGV 1yptA 340 :GQKTISVPVVHVGNWPDQTA T0305 208 :EYALPVLTFVRRSSAARM 1yptA 360 :VSSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yptA 423 :RNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDAL 1yptA 446 :QKDEQLDVLIKLA Number of specific fragments extracted= 11 number of extra gaps= 1 total=4625 Number of alignments=594 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 49 :NKHKNRYINILAYDHSRVKLR 1yptA 223 :GEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1yptA 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKI 1yptA 303 :RQSGTYGSITVESKMTQQ T0305 161 :HACYTVRRFSIRNTKV 1yptA 324 :GDGIMADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGV 1yptA 340 :GQKTISVPVVHVGNWPDQTA T0305 208 :EYALPVLTFVRRSSAARM 1yptA 360 :VSSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yptA 423 :RNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDA 1yptA 446 :QKDEQLDVLIKL Number of specific fragments extracted= 11 number of extra gaps= 1 total=4636 Number of alignments=595 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1yptA 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yptA 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTKV 1yptA 325 :DGIMADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGVP 1yptA 340 :GQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1yptA 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMN T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yptA 422 :SRNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDA 1yptA 446 :QKDEQLDVLIKL Number of specific fragments extracted= 11 number of extra gaps= 1 total=4647 Number of alignments=596 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 18 :NNQHGFSEDFEEVQR 1yptA 192 :EARAELSSRLTTLRN T0305 33 :CTADMN 1yptA 208 :LAPATN T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVK 1yptA 214 :DPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 72 :PG 1yptA 242 :AD T0305 82 :INANYVDGYNK 1yptA 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yptA 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yptA 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIHAC 1yptA 303 :RQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRNT 1yptA 329 :ADMYTLTIREA T0305 187 :RQNERVVIQYHYTQWPDMGVP 1yptA 340 :GQKTISVPVVHVGNWPDQTAV T0305 209 :YALPVLTFVRRSSAARM 1yptA 361 :SSEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSML 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMN T0305 258 :K 1yptA 421 :D T0305 259 :STVNVLGFLKHIRTQRNY 1yptA 425 :SQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDAL 1yptA 446 :QKDEQLDVLIKLA Number of specific fragments extracted= 15 number of extra gaps= 1 total=4662 Number of alignments=597 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 Warning: unaligning (T0305)L296 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (1yptA)S468 Warning: unaligning (T0305)G297 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1yptA)S468 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yptA 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1yptA 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYT T0305 181 :KGNPKGRQNERVVIQYHYTQWPDMGVPE 1yptA 334 :LTIREAGQKTISVPVVHVGNWPDQTAVS T0305 209 :YALPVLTFVRRSSAARM 1yptA 364 :VTKALASLVDQTAETKR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yptA 422 :SRNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDAL 1yptA 446 :QKDEQLDVLIKLA T0305 292 :LEAI 1yptA 463 :RPLL Number of specific fragments extracted= 9 number of extra gaps= 2 total=4671 Number of alignments=598 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 Warning: unaligning (T0305)L296 because of BadResidue code HAS_OXT+BAD_PEPTIDE in next template residue (1yptA)S468 Warning: unaligning (T0305)G297 because of BadResidue code HAS_OXT+BAD_PEPTIDE at template residue (1yptA)S468 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yptA 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1yptA 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYT T0305 181 :KGNPKGRQNERVVIQYHYTQWPDMGVPE 1yptA 334 :LTIREAGQKTISVPVVHVGNWPDQTAVS T0305 209 :YALPVLTFVRRSSAARM 1yptA 364 :VTKALASLVDQTAETKR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yptA 422 :SRNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDALLE 1yptA 446 :QKDEQLDVLIKLAEG T0305 294 :AI 1yptA 465 :LL Number of specific fragments extracted= 9 number of extra gaps= 2 total=4680 Number of alignments=599 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yptA 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1yptA 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY T0305 143 :ENSEEYGNIIVTLKSTKIHAC 1yptA 303 :RQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRN 1yptA 329 :ADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVPE 1yptA 339 :AGQKTISVPVVHVGNWPDQTAVS T0305 209 :YALPVLTFVRRSSAA 1yptA 364 :VTKALASLVDQTAET T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yptA 422 :SRNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDA 1yptA 446 :QKDEQLDVLIKL T0305 295 :ILG 1yptA 458 :AEG Number of specific fragments extracted= 11 number of extra gaps= 1 total=4691 Number of alignments=600 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yptA 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCD 1yptA 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFG T0305 140 :WPT 1yptA 298 :MPD T0305 143 :ENSEEYGNIIVTLKSTKIHAC 1yptA 303 :RQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRN 1yptA 329 :ADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVPE 1yptA 339 :AGQKTISVPVVHVGNWPDQTAVS T0305 210 :ALPVLTFVRRSSAARM 1yptA 362 :SEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 258 :K 1yptA 422 :S T0305 259 :STVNVLGFLKHIRTQRNY 1yptA 425 :SQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDALL 1yptA 446 :QKDEQLDVLIKLAE Number of specific fragments extracted= 12 number of extra gaps= 1 total=4703 Number of alignments=601 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 210 :PATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yptA 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1yptA 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYT T0305 181 :KGNPKGRQNERVVIQYHYTQWPDMGVPE 1yptA 334 :LTIREAGQKTISVPVVHVGNWPDQTAVS T0305 209 :YALPVLTFVRRSSAARM 1yptA 364 :VTKALASLVDQTAETKR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yptA 422 :SRNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDAL 1yptA 446 :QKDEQLDVLIKLA Number of specific fragments extracted= 8 number of extra gaps= 1 total=4711 Number of alignments=602 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 208 :LAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yptA 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1yptA 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYT T0305 181 :KGNPKGRQNERVVIQYHYTQWPDMGVPE 1yptA 334 :LTIREAGQKTISVPVVHVGNWPDQTAVS T0305 209 :YALPVLTFVRRSSAARM 1yptA 364 :VTKALASLVDQTAETKR T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yptA 422 :SRNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIH 1yptA 446 :QKDEQLDVLI Number of specific fragments extracted= 8 number of extra gaps= 1 total=4719 Number of alignments=603 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yptA 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1yptA 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDY T0305 143 :ENSEEYGNIIVTLKSTKIHAC 1yptA 303 :RQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRN 1yptA 329 :ADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVPE 1yptA 339 :AGQKTISVPVVHVGNWPDQTAVS T0305 209 :YALPVLTFVRRSSAA 1yptA 364 :VTKALASLVDQTAET T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yptA 422 :SRNSQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDA 1yptA 446 :QKDEQLDVLIKL Number of specific fragments extracted= 10 number of extra gaps= 1 total=4729 Number of alignments=604 # 1yptA read from 1yptA/merged-a2m # found chain 1yptA in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yptA)P191 Warning: unaligning (T0305)L277 because of BadResidue code BAD_PEPTIDE in next template residue (1yptA)V445 Warning: unaligning (T0305)V278 because of BadResidue code BAD_PEPTIDE at template residue (1yptA)V445 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yptA 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yptA 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCD 1yptA 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFG T0305 140 :WPT 1yptA 298 :MPD T0305 143 :ENSEEYGNIIVTLKSTKIHAC 1yptA 303 :RQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRN 1yptA 329 :ADMYTLTIRE T0305 186 :GRQNERVVIQYHYTQWPDMGVPE 1yptA 339 :AGQKTISVPVVHVGNWPDQTAVS T0305 210 :ALPVLTFVRRSSAARM 1yptA 362 :SEVTKALASLVDQTAE T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQ 1yptA 394 :DSKLRPVIHCRAGVGRTAQLIGAMCMND T0305 258 :K 1yptA 422 :S T0305 259 :STVNVLGFLKHIRTQRNY 1yptA 425 :SQLSVEDMVSQMRVQRNG T0305 279 :QTEEQYIFIHDAL 1yptA 446 :QKDEQLDVLIKLA Number of specific fragments extracted= 12 number of extra gaps= 1 total=4741 Number of alignments=605 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yts/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1yts expands to /projects/compbio/data/pdb/1yts.pdb.gz 1yts:Warning: there is no chain 1yts will retry with 1ytsA # T0305 read from 1yts/merged-a2m # 1yts read from 1yts/merged-a2m # adding 1yts to template set # found chain 1yts in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yts)P191 Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1yts 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA T0305 81 :YINANYVDGYN 1yts 243 :DLNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYWP 1yts 293 :NQRFGMPDYFR T0305 144 :NSEEYGNIIVTLKSTKI 1yts 304 :QSGTYGSITVESKMTQQ T0305 161 :HACYTVRRFSIRNTK 1yts 323 :LGDGIMADMYTLTIR T0305 185 :KGRQNERV 1yts 338 :EAGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVPEYA 1yts 356 :DQTAVSSE T0305 211 :LPVLTFVRRSSAARM 1yts 366 :KALASLVDQTAETKR T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQQI 1yts 403 :SRAGVGRTAQLIGAMCMNDSR T0305 258 :KSTVNVLGFLKHIRTQRNY 1yts 424 :NSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAILG 1yts 444 :MVQKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 15 number of extra gaps= 5 total=4756 Number of alignments=606 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1yts 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA T0305 81 :YINANYVDGYN 1yts 243 :DLNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYWP 1yts 293 :NQRFGMPDYFR T0305 144 :NSEEYGNIIVTLKSTKI 1yts 304 :QSGTYGSITVESKMTQQ T0305 161 :HACYTVRRFSIRNTK 1yts 323 :LGDGIMADMYTLTIR T0305 185 :KGRQNERV 1yts 338 :EAGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVPEYA 1yts 356 :DQTAVSSE T0305 211 :LPVLTFVRRSSAARM 1yts 366 :KALASLVDQTAETKR T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQQI 1yts 403 :SRAGVGRTAQLIGAMCMNDSR T0305 258 :KSTVNVLGFLKHIRTQRNY 1yts 424 :NSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAILG 1yts 444 :MVQKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 15 number of extra gaps= 5 total=4771 Number of alignments=607 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yts)P191 Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1yts 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA T0305 81 :YINANYVDGYN 1yts 243 :DLNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYWP 1yts 293 :NQRFGMPDYFR T0305 144 :NSEEYGNIIVTLKSTKI 1yts 304 :QSGTYGSITVESKMTQQ T0305 161 :HACYTVRRFSIRNTK 1yts 323 :LGDGIMADMYTLTIR T0305 185 :KGRQNERV 1yts 338 :EAGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVPEYA 1yts 356 :DQTAVSSE T0305 211 :LPVLTFVRRSSAARM 1yts 366 :KALASLVDQTAETKR T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQQI 1yts 403 :SRAGVGRTAQLIGAMCMNDSR T0305 258 :KSTVNVLGFLKHIRTQRNY 1yts 424 :NSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAI 1yts 444 :MVQKDEQLDVLIKLAEGQG Number of specific fragments extracted= 15 number of extra gaps= 5 total=4786 Number of alignments=608 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 19 :NQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1yts 193 :ARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA T0305 81 :YINANYVDGYN 1yts 243 :DLNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYWP 1yts 293 :NQRFGMPDYFR T0305 144 :NSEEYGNIIVTLKSTKI 1yts 304 :QSGTYGSITVESKMTQQ T0305 161 :HACYTVRRFSIRNTK 1yts 323 :LGDGIMADMYTLTIR T0305 185 :KGRQNERV 1yts 338 :EAGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVPEYA 1yts 356 :DQTAVSSE T0305 211 :LPVLTFVRRSSAARM 1yts 366 :KALASLVDQTAETKR T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQQI 1yts 403 :SRAGVGRTAQLIGAMCMNDSR T0305 258 :KSTVNVLGFLKHIRTQRNY 1yts 424 :NSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAI 1yts 444 :MVQKDEQLDVLIKLAEGQG Number of specific fragments extracted= 15 number of extra gaps= 5 total=4801 Number of alignments=609 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)Q20 because first residue in template chain is (1yts)P191 Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 21 :HGFSEDFEEVQRCTADM 1yts 192 :EARAELSSRLTTLRNTL T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVK 1yts 212 :TNDPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 80 :DYINANYVDGYNK 1yts 242 :ADLNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYWPT 1yts 293 :NQRFGMPDYFRQ T0305 145 :SEEYGNIIVTLKSTKIHA 1yts 305 :SGTYGSITVESKMTQQVG T0305 163 :CYTVRRFSIRN 1yts 328 :MADMYTLTIRE T0305 186 :GRQNERV 1yts 339 :AGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVP 1yts 356 :DQTAV T0305 208 :EYALPVLTFVRRSSAARM 1yts 363 :EVTKALASLVDQTAETKR T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQQIKD 1yts 403 :SRAGVGRTAQLIGAMCMNDSRNS T0305 260 :TVNVLGFLKHIRTQRN 1yts 426 :QLSVEDMVSQMRVQRN T0305 276 :YLVQTEEQYIFIHDALLEAI 1yts 443 :IMVQKDEQLDVLIKLAEGQG Number of specific fragments extracted= 16 number of extra gaps= 5 total=4817 Number of alignments=610 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 21 :HGFSEDFEEVQRCTADM 1yts 192 :EARAELSSRLTTLRNTL T0305 38 :NITAEHSNHPENKHKNRYINILAYDHSRVK 1yts 212 :TNDPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 80 :DYINANYVDGYNK 1yts 242 :ADLNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYWPT 1yts 293 :NQRFGMPDYFRQ T0305 145 :SEEYGNIIVTLKSTKIHA 1yts 305 :SGTYGSITVESKMTQQVG T0305 163 :CYTVRRFSIRN 1yts 328 :MADMYTLTIRE T0305 186 :GRQNERV 1yts 339 :AGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVP 1yts 356 :DQTAV T0305 208 :EYALPVLTFVRRSSAARM 1yts 363 :EVTKALASLVDQTAETKR T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQQIKD 1yts 403 :SRAGVGRTAQLIGAMCMNDSRNS T0305 260 :TVNVLGFLKHIRTQRN 1yts 426 :QLSVEDMVSQMRVQRN T0305 276 :YLVQTEEQYIFIHDALLEA 1yts 443 :IMVQKDEQLDVLIKLAEGQ Number of specific fragments extracted= 16 number of extra gaps= 5 total=4833 Number of alignments=611 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set T0305 82 :INANYVDGYNKAK 1yts 244 :LNANYIQVGNTRT T0305 97 :IATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTK 1yts 257 :IACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=4835 Number of alignments=612 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 81 :YINANYVDGYNK 1yts 243 :DLNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHAC 1yts 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRN 1yts 329 :ADMYTLTIRE T0305 178 :KG 1yts 339 :AG T0305 188 :QNERV 1yts 341 :QKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVP 1yts 356 :DQTAV T0305 208 :EYALPVLTFV 1yts 363 :EVTKALASLV T0305 218 :RRSSAARM 1yts 386 :KGSSAVAD T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTY 1yts 403 :SRAGVGRTAQL T0305 248 :IDSMLQQIKDKSTVNVLGFLKHIRTQRNYL 1yts 414 :IGAMCMNDSRNSQLSVEDMVSQMRVQRNGI T0305 278 :VQTEEQY 1yts 445 :VQKDEQL Number of specific fragments extracted= 14 number of extra gaps= 5 total=4849 Number of alignments=613 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yts)P191 Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNKA 1yts 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yts 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yts 324 :GDGIMADMYTLTIR T0305 185 :KGRQNERV 1yts 338 :EAGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGV 1yts 356 :DQTA T0305 208 :EYALPVLTFVRRSSAARM 1yts 360 :VSSEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQQ 1yts 403 :SRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yts 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAILG 1yts 444 :MVQKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 15 number of extra gaps= 5 total=4864 Number of alignments=614 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNKA 1yts 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yts 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yts 324 :GDGIMADMYTLTIR T0305 185 :KGRQNERV 1yts 338 :EAGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVPE 1yts 356 :DQTAVS T0305 210 :ALPVLTFVRRSSAARM 1yts 362 :SEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQQ 1yts 403 :SRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yts 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAILG 1yts 444 :MVQKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 15 number of extra gaps= 5 total=4879 Number of alignments=615 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yts)P191 Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1yts 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA T0305 80 :D 1yts 243 :D T0305 82 :INANYVDGYNK 1yts 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yts 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yts 325 :DGIMADMYTLTIRE T0305 186 :GRQNERV 1yts 339 :AGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVP 1yts 356 :DQTAV T0305 209 :YALPVLTFVRRSSAARM 1yts 361 :SSEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSM 1yts 403 :SRAGVGRTAQLIGAMCM T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yts 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYI 1yts 444 :MVQKDEQLD T0305 290 :ALLEAILG 1yts 453 :VLIKLAEG Number of specific fragments extracted= 17 number of extra gaps= 5 total=4896 Number of alignments=616 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)F2 because first residue in template chain is (1yts)P191 Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 3 :QSMKQFVKHIGELYS 1yts 192 :EARAELSSRLTTLRN T0305 32 :RCTADMN 1yts 207 :TLAPATN T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVK 1yts 214 :DPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 72 :PG 1yts 242 :AD T0305 82 :INANYVDGYNKA 1yts 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yts 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yts 325 :DGIMADMYTLTIRE T0305 186 :GRQNERV 1yts 339 :AGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVP 1yts 356 :DQTAV T0305 209 :YALPVLTFVRRSSAARM 1yts 361 :SSEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSM 1yts 403 :SRAGVGRTAQLIGAMCM T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yts 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAIL 1yts 444 :MVQKDEQLDVLIKLAEGQGR Number of specific fragments extracted= 18 number of extra gaps= 5 total=4914 Number of alignments=617 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 29 :EVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 203 :TLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNKA 1yts 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yts 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yts 324 :GDGIMADMYTLTIR T0305 185 :KGRQNERV 1yts 338 :EAGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGV 1yts 356 :DQTA T0305 208 :EYALPVLTFVRRSSAARM 1yts 360 :VSSEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQQ 1yts 403 :SRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yts 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDAL 1yts 444 :MVQKDEQLDVLIKLA Number of specific fragments extracted= 15 number of extra gaps= 5 total=4929 Number of alignments=618 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 41 :AEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 215 :PRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNKA 1yts 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yts 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yts 324 :GDGIMADMYTLTIR T0305 185 :KGRQNERV 1yts 338 :EAGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVPE 1yts 356 :DQTAVS T0305 210 :ALPVLTFVRRSSAARM 1yts 362 :SEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQQ 1yts 403 :SRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yts 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHD 1yts 444 :MVQKDEQLDVLIK Number of specific fragments extracted= 15 number of extra gaps= 5 total=4944 Number of alignments=619 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 19 :NQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKL 1yts 193 :ARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA T0305 80 :D 1yts 243 :D T0305 82 :INANYVDGYNK 1yts 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yts 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yts 325 :DGIMADMYTLTIRE T0305 186 :GRQNERV 1yts 339 :AGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVP 1yts 356 :DQTAV T0305 209 :YALPVLTFVRRSSAARM 1yts 361 :SSEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSM 1yts 403 :SRAGVGRTAQLIGAMCM T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yts 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDA 1yts 444 :MVQKDEQLDVLIKL Number of specific fragments extracted= 16 number of extra gaps= 5 total=4960 Number of alignments=620 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 3 :QSMKQFVKHIGELYS 1yts 192 :EARAELSSRLTTLRN T0305 32 :RCTADMN 1yts 207 :TLAPATN T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVK 1yts 214 :DPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 72 :PG 1yts 242 :AD T0305 82 :INANYVDGYNKA 1yts 244 :LNANYIQVGNTR T0305 96 :YIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 256 :TIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yts 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTK 1yts 325 :DGIMADMYTLTIRE T0305 186 :GRQNERV 1yts 339 :AGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVP 1yts 356 :DQTAV T0305 209 :YALPVLTFVRRSSAARM 1yts 361 :SSEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSM 1yts 403 :SRAGVGRTAQLIGAMCM T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yts 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLE 1yts 444 :MVQKDEQLDVLIKLAEG Number of specific fragments extracted= 18 number of extra gaps= 5 total=4978 Number of alignments=621 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yts)P191 Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1yts 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVT 1yts 303 :RQSGTYGSITVE T0305 155 :LKSTKIHACYTVRRFSIRNTKV 1yts 318 :TQQVGLGDGIMADMYTLTIREA T0305 187 :RQNERV 1yts 340 :GQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGV 1yts 356 :DQTA T0305 208 :EYALPVLTFVRRSSAARM 1yts 360 :VSSEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQQ 1yts 403 :SRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yts 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAILG 1yts 444 :MVQKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 15 number of extra gaps= 5 total=4993 Number of alignments=622 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 4 :SMKQ 1yts 196 :ELSS T0305 26 :DFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 200 :RLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1yts 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKI 1yts 303 :RQSGTYGSITVESKMTQQ T0305 161 :HACYTVRRFSIRNTKV 1yts 324 :GDGIMADMYTLTIREA T0305 187 :RQNERV 1yts 340 :GQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGV 1yts 356 :DQTA T0305 208 :EYALPVLTFVRRSSAARM 1yts 360 :VSSEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQQ 1yts 403 :SRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yts 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAILG 1yts 444 :MVQKDEQLDVLIKLAEGQGRP Number of specific fragments extracted= 16 number of extra gaps= 5 total=5009 Number of alignments=623 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yts)P191 Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1yts 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yts 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTKV 1yts 325 :DGIMADMYTLTIREA T0305 187 :RQNERV 1yts 340 :GQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVP 1yts 356 :DQTAV T0305 209 :YALPVLTFVRRSSAARM 1yts 361 :SSEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSM 1yts 403 :SRAGVGRTAQLIGAMCM T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yts 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHD 1yts 444 :MVQKDEQLDVLIK T0305 294 :AILG 1yts 457 :LAEG Number of specific fragments extracted= 16 number of extra gaps= 5 total=5025 Number of alignments=624 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)F2 because first residue in template chain is (1yts)P191 Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 3 :QSMKQFVKHIGELYS 1yts 192 :EARAELSSRLTTLRN T0305 32 :RCTADMN 1yts 207 :TLAPATN T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVK 1yts 214 :DPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 72 :PG 1yts 242 :AD T0305 82 :INANYVDGYNK 1yts 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIHAC 1yts 303 :RQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRNT 1yts 329 :ADMYTLTIREA T0305 187 :RQNERV 1yts 340 :GQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVP 1yts 356 :DQTAV T0305 209 :YALPVLTFVRRSSAARM 1yts 361 :SSEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSM 1yts 403 :SRAGVGRTAQLIGAMCM T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yts 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEAIL 1yts 444 :MVQKDEQLDVLIKLAEGQGR Number of specific fragments extracted= 18 number of extra gaps= 5 total=5043 Number of alignments=625 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 51 :HKNRYINILAYDHSRVKLR 1yts 225 :KLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1yts 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVT 1yts 303 :RQSGTYGSITVE T0305 155 :LKSTKIHACYTVRRFSIRNTKV 1yts 318 :TQQVGLGDGIMADMYTLTIREA T0305 187 :RQNERV 1yts 340 :GQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGV 1yts 356 :DQTA T0305 208 :EYALPVLTFVRRSSAARM 1yts 360 :VSSEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQQ 1yts 403 :SRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yts 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDAL 1yts 444 :MVQKDEQLDVLIKLA Number of specific fragments extracted= 15 number of extra gaps= 5 total=5058 Number of alignments=626 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 49 :NKHKNRYINILAYDHSRVKLR 1yts 223 :GEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1yts 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKI 1yts 303 :RQSGTYGSITVESKMTQQ T0305 161 :HACYTVRRFSIRNTKV 1yts 324 :GDGIMADMYTLTIREA T0305 187 :RQNERV 1yts 340 :GQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGV 1yts 356 :DQTA T0305 208 :EYALPVLTFVRRSSAARM 1yts 360 :VSSEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQQ 1yts 403 :SRAGVGRTAQLIGAMCMNDS T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yts 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDA 1yts 444 :MVQKDEQLDVLIKL Number of specific fragments extracted= 15 number of extra gaps= 5 total=5073 Number of alignments=627 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 20 :QHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 194 :RAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYNK 1yts 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIH 1yts 303 :RQSGTYGSITVESKMTQQV T0305 162 :ACYTVRRFSIRNTKV 1yts 325 :DGIMADMYTLTIREA T0305 187 :RQNERV 1yts 340 :GQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVP 1yts 356 :DQTAV T0305 209 :YALPVLTFVRRSSAARM 1yts 361 :SSEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSM 1yts 403 :SRAGVGRTAQLIGAMCM T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yts 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDA 1yts 444 :MVQKDEQLDVLIKL Number of specific fragments extracted= 15 number of extra gaps= 5 total=5088 Number of alignments=628 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 5 :MKQFVKHIGELYS 1yts 194 :RAELSSRLTTLRN T0305 32 :RCTADMN 1yts 207 :TLAPATN T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVK 1yts 214 :DPRYLQACGGEKLNRFRDIQCRRQTAVR T0305 72 :PG 1yts 242 :AD T0305 82 :INANYVDGYNK 1yts 244 :LNANYIQVGNT T0305 95 :AYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVE 1yts 255 :RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSE T0305 131 :KGRRKCDQYW 1yts 293 :NQRFGMPDYF T0305 143 :ENSEEYGNIIVTLKSTKIHAC 1yts 303 :RQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRNT 1yts 329 :ADMYTLTIREA T0305 187 :RQNERV 1yts 340 :GQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVP 1yts 356 :DQTAV T0305 209 :YALPVLTFVRRSSAARM 1yts 361 :SSEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSM 1yts 403 :SRAGVGRTAQLIGAMCM T0305 257 :DKSTVNVLGFLKHIRTQRNY 1yts 423 :RNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLE 1yts 444 :MVQKDEQLDVLIKLAEG Number of specific fragments extracted= 18 number of extra gaps= 5 total=5106 Number of alignments=629 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yts)P191 Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yts 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1yts 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYT T0305 181 :KGNPKGRQNERV 1yts 334 :LTIREAGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVPE 1yts 356 :DQTAVS T0305 209 :YALPVLTFVRRSSAARM 1yts 364 :VTKALASLVDQTAETKR T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQ 1yts 403 :SRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yts 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDAL 1yts 444 :MVQKDEQLDVLIKLA T0305 292 :LEAILG 1yts 463 :RPLLNS Number of specific fragments extracted= 13 number of extra gaps= 5 total=5119 Number of alignments=630 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yts)P191 Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yts 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1yts 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYT T0305 181 :KGNPKGRQNERV 1yts 334 :LTIREAGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVPE 1yts 356 :DQTAVS T0305 209 :YALPVLTFVRRSSAARM 1yts 364 :VTKALASLVDQTAETKR T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQ 1yts 403 :SRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yts 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLE 1yts 444 :MVQKDEQLDVLIKLAEG T0305 294 :AILG 1yts 465 :LLNS Number of specific fragments extracted= 13 number of extra gaps= 5 total=5132 Number of alignments=631 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yts)P191 Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yts 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACY 1yts 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLG T0305 165 :TVRRFSIRN 1yts 330 :DMYTLTIRE T0305 186 :GRQNERV 1yts 339 :AGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVPEY 1yts 356 :DQTAVSS T0305 211 :LPVLTFVRRSSAARM 1yts 363 :EVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQ 1yts 403 :SRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yts 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALL 1yts 444 :MVQKDEQLDVLIKLAE T0305 297 :G 1yts 460 :G Number of specific fragments extracted= 14 number of extra gaps= 5 total=5146 Number of alignments=632 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)S17 because first residue in template chain is (1yts)P191 Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 18 :NNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 192 :EARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yts 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHAC 1yts 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRN 1yts 329 :ADMYTLTIRE T0305 186 :GRQNERV 1yts 339 :AGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVPE 1yts 356 :DQTAVS T0305 210 :ALPVLTFVRRSSAARM 1yts 362 :SEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSM 1yts 403 :SRAGVGRTAQLIGAMCM T0305 257 :DK 1yts 422 :SR T0305 259 :STVNVLGFLKHIRTQRNY 1yts 425 :SQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLEA 1yts 444 :MVQKDEQLDVLIKLAEGQ Number of specific fragments extracted= 14 number of extra gaps= 5 total=5160 Number of alignments=633 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 36 :DMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 210 :PATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yts 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1yts 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYT T0305 181 :KGNPKGRQNERV 1yts 334 :LTIREAGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVPE 1yts 356 :DQTAVS T0305 209 :YALPVLTFVRRSSAARM 1yts 364 :VTKALASLVDQTAETKR T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQ 1yts 403 :SRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yts 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDAL 1yts 444 :MVQKDEQLDVLIKLA Number of specific fragments extracted= 12 number of extra gaps= 5 total=5172 Number of alignments=634 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 35 :ADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 209 :APATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yts 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1yts 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYT T0305 181 :KGNPKGRQNERV 1yts 334 :LTIREAGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVPE 1yts 356 :DQTAVS T0305 209 :YALPVLTFVRRSSAARM 1yts 364 :VTKALASLVDQTAETKR T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQ 1yts 403 :SRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yts 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIH 1yts 444 :MVQKDEQLDVLI Number of specific fragments extracted= 12 number of extra gaps= 5 total=5184 Number of alignments=635 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 20 :QHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 194 :RAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yts 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHACY 1yts 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLG T0305 165 :TVRRFSIRN 1yts 330 :DMYTLTIRE T0305 186 :GRQNERV 1yts 339 :AGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVPEY 1yts 356 :DQTAVSS T0305 211 :LPVLTFVRRSSAARM 1yts 363 :EVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSMLQ 1yts 403 :SRAGVGRTAQLIGAMCMND T0305 256 :KDKSTVNVLGFLKHIRTQRNY 1yts 422 :SRNSQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDA 1yts 444 :MVQKDEQLDVLIKL Number of specific fragments extracted= 13 number of extra gaps= 5 total=5197 Number of alignments=636 # 1yts read from 1yts/merged-a2m # found chain 1yts in template set Warning: unaligning (T0305)V193 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P347 Warning: unaligning (T0305)I194 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P347 Warning: unaligning (T0305)W201 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)P355 Warning: unaligning (T0305)P202 because of BadResidue code BAD_PEPTIDE at template residue (1yts)P355 Warning: unaligning (T0305)P226 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)S395 Warning: unaligning (T0305)E227 because of BadResidue code BAD_PEPTIDE at template residue (1yts)S395 Warning: unaligning (T0305)P230 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1yts)P399 Warning: unaligning (T0305)V231 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1yts)P399 Warning: unaligning (T0305)V233 because of BadResidue code BAD_PEPTIDE in next template residue (1yts)H402 Warning: unaligning (T0305)H234 because of BadResidue code BAD_PEPTIDE at template residue (1yts)H402 T0305 20 :QHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1yts 194 :RAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRAD T0305 82 :INANYVDGYN 1yts 244 :LNANYIQVGN T0305 94 :KAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKIHAC 1yts 254 :TRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGL T0305 164 :YTVRRFSIRN 1yts 329 :ADMYTLTIRE T0305 186 :GRQNERV 1yts 339 :AGQKTIS T0305 195 :QYHYTQ 1yts 348 :VVHVGN T0305 203 :DMGVPE 1yts 356 :DQTAVS T0305 210 :ALPVLTFVRRSSAARM 1yts 362 :SEVTKALASLVDQTAE T0305 228 :TG 1yts 396 :KL T0305 232 :L 1yts 400 :V T0305 235 :CSAGVGRTGTYIVIDSM 1yts 403 :SRAGVGRTAQLIGAMCM T0305 257 :DK 1yts 422 :SR T0305 259 :STVNVLGFLKHIRTQRNY 1yts 425 :SQLSVEDMVSQMRVQRNG T0305 277 :LVQTEEQYIFIHDALLE 1yts 444 :MVQKDEQLDVLIKLAEG Number of specific fragments extracted= 14 number of extra gaps= 5 total=5211 Number of alignments=637 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1p15A/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1p15A expands to /projects/compbio/data/pdb/1p15.pdb.gz 1p15A:# T0305 read from 1p15A/merged-a2m # 1p15A read from 1p15A/merged-a2m # adding 1p15A to template set # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMP 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQ T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1p15A 716 :GNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA Number of specific fragments extracted= 7 number of extra gaps= 4 total=5218 Number of alignments=638 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMP 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQ T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1p15A 716 :GNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA Number of specific fragments extracted= 7 number of extra gaps= 4 total=5225 Number of alignments=639 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMP 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQ T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1p15A 716 :GNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYI Number of specific fragments extracted= 7 number of extra gaps= 4 total=5232 Number of alignments=640 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 544 :TGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMP 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQ T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1p15A 716 :GNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYID Number of specific fragments extracted= 7 number of extra gaps= 4 total=5239 Number of alignments=641 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLP 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKR T0305 75 :DSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 574 :GEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA Number of specific fragments extracted= 7 number of extra gaps= 4 total=5246 Number of alignments=642 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 1 :Y 1p15A 542 :M T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLP 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKR T0305 75 :DSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 574 :GEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA Number of specific fragments extracted= 8 number of extra gaps= 4 total=5254 Number of alignments=643 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLP 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKR T0305 75 :DSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 574 :GEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYI Number of specific fragments extracted= 7 number of extra gaps= 4 total=5261 Number of alignments=644 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 44 :SNHPENKHKNRYINILAYDHSRVKLRPLP 1p15A 545 :GNLPANMKKNRVLQIIPYEFNRVIIPVKR T0305 75 :DSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 574 :GEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYI Number of specific fragments extracted= 7 number of extra gaps= 4 total=5268 Number of alignments=645 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)V176 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 44 :SNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 545 :GNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 177 :KK 1p15A 676 :NK T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRR 1p15A 678 :SRQIRQFHFHGWPEVGIPSDGKGMINIIAA T0305 220 :SSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1p15A 709 :QKQQQQSGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYI Number of specific fragments extracted= 8 number of extra gaps= 4 total=5276 Number of alignments=646 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)V176 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 44 :SNHPENKHKNRYINILAYDHSRVKLRPLPGK 1p15A 545 :GNLPANMKKNRVLQIIPYEFNRVIIPVKRGE T0305 77 :KHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 576 :ENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 177 :KK 1p15A 676 :NK T0305 190 :ERVVIQYHYTQWPDMGVPEYALPVLTFVRRSS 1p15A 678 :SRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQ T0305 222 :AARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1p15A 711 :QQQQSGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYI Number of specific fragments extracted= 8 number of extra gaps= 4 total=5284 Number of alignments=647 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA Number of specific fragments extracted= 7 number of extra gaps= 4 total=5291 Number of alignments=648 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA Number of specific fragments extracted= 7 number of extra gaps= 4 total=5298 Number of alignments=649 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)K185 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)G186 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA Number of specific fragments extracted= 7 number of extra gaps= 4 total=5305 Number of alignments=650 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)K185 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)G186 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMP 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQ T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1p15A 716 :GNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA Number of specific fragments extracted= 7 number of extra gaps= 4 total=5312 Number of alignments=651 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYI Number of specific fragments extracted= 7 number of extra gaps= 4 total=5319 Number of alignments=652 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYI Number of specific fragments extracted= 7 number of extra gaps= 4 total=5326 Number of alignments=653 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)K185 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)G186 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYID Number of specific fragments extracted= 7 number of extra gaps= 4 total=5333 Number of alignments=654 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)K185 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)G186 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 544 :TGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMP 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQ T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1p15A 716 :GNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYI Number of specific fragments extracted= 7 number of extra gaps= 4 total=5340 Number of alignments=655 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA Number of specific fragments extracted= 7 number of extra gaps= 4 total=5347 Number of alignments=656 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA Number of specific fragments extracted= 7 number of extra gaps= 4 total=5354 Number of alignments=657 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA Number of specific fragments extracted= 7 number of extra gaps= 4 total=5361 Number of alignments=658 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMP 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQ T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1p15A 716 :GNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA Number of specific fragments extracted= 7 number of extra gaps= 4 total=5368 Number of alignments=659 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYI Number of specific fragments extracted= 7 number of extra gaps= 4 total=5375 Number of alignments=660 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYI Number of specific fragments extracted= 7 number of extra gaps= 4 total=5382 Number of alignments=661 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYID Number of specific fragments extracted= 7 number of extra gaps= 4 total=5389 Number of alignments=662 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)T174 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)K175 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLRPLPGKDS 1p15A 544 :TGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 578 :TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMP 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQ T0305 227 :ETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1p15A 716 :GNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYI Number of specific fragments extracted= 7 number of extra gaps= 4 total=5396 Number of alignments=663 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)K185 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)G186 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIP T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 571 :VKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA Number of specific fragments extracted= 7 number of extra gaps= 4 total=5403 Number of alignments=664 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)K185 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)G186 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIP T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 571 :VKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA Number of specific fragments extracted= 7 number of extra gaps= 4 total=5410 Number of alignments=665 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)K185 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)G186 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIP T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 571 :VKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA Number of specific fragments extracted= 7 number of extra gaps= 4 total=5417 Number of alignments=666 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)K185 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)G186 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIP T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 571 :VKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYID Number of specific fragments extracted= 7 number of extra gaps= 4 total=5424 Number of alignments=667 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)K185 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)G186 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIP T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 571 :VKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYI Number of specific fragments extracted= 7 number of extra gaps= 4 total=5431 Number of alignments=668 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)K185 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)G186 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIP T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 571 :VKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYI Number of specific fragments extracted= 7 number of extra gaps= 4 total=5438 Number of alignments=669 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)A41 because first residue in template chain is (1p15A)M542 Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)K185 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)G186 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1p15A 543 :RTGNLPANMKKNRVLQIIPYEFNRVIIP T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 571 :VKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYI Number of specific fragments extracted= 7 number of extra gaps= 4 total=5445 Number of alignments=670 # 1p15A read from 1p15A/merged-a2m # found chain 1p15A in template set Warning: unaligning (T0305)V129 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E629 Warning: unaligning (T0305)E130 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E629 Warning: unaligning (T0305)K131 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)G631 Warning: unaligning (T0305)G132 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)G631 Warning: unaligning (T0305)C136 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)A636 Warning: unaligning (T0305)D137 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)A636 Warning: unaligning (T0305)S157 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)E657 Warning: unaligning (T0305)T158 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E657 Warning: unaligning (T0305)K185 because of BadResidue code BAD_PEPTIDE in next template residue (1p15A)R674 Warning: unaligning (T0305)G186 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)R674 Warning: unaligning (T0305)R187 because of BadResidue code BAD_PEPTIDE at template residue (1p15A)E675 T0305 43 :HSNHPENKHKNRYINILAYDHSRVKLR 1p15A 544 :TGNLPANMKKNRVLQIIPYEFNRVIIP T0305 72 :PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNL 1p15A 571 :VKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTEL T0305 133 :RRK 1p15A 632 :QEK T0305 138 :QYWPTENSEEYGNIIVTLK 1p15A 637 :QYWPSDGLVSYGDITVELK T0305 159 :KIHACYTVRRFSIRN 1p15A 658 :EECESYTVRDLLVTN T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1p15A 676 :NKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1p15A 715 :SGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQE Number of specific fragments extracted= 7 number of extra gaps= 4 total=5452 Number of alignments=671 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q6nA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1q6nA expands to /projects/compbio/data/pdb/1q6n.pdb.gz 1q6nA:# T0305 read from 1q6nA/merged-a2m # 1q6nA read from 1q6nA/merged-a2m # adding 1q6nA to template set # found chain 1q6nA in template set T0305 47 :PENKHKNRYINILAYDHSRVKLR 1q6nA 538 :PKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 1q6nA 561 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTKV 1q6nA 638 :TNLKLTLISEDIKSYYTVRQLELENLTT T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFV 1q6nA 666 :QETREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1q6nA 698 :VRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCL T0305 253 :QQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1q6nA 736 :DKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=5458 Number of alignments=672 # 1q6nA read from 1q6nA/merged-a2m # found chain 1q6nA in template set T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1q6nA 533 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 1q6nA 561 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIHACYTVRRFSIRNTK 1q6nA 638 :TNLKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFV 1q6nA 665 :TQETREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1q6nA 698 :VRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCL T0305 253 :QQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1q6nA 736 :DKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG Number of specific fragments extracted= 6 number of extra gaps= 0 total=5464 Number of alignments=673 # 1q6nA read from 1q6nA/merged-a2m # found chain 1q6nA in template set Warning: unaligning (T0305)M5 because first residue in template chain is (1q6nA)K497 T0305 6 :KQFVKHIGELYS 1q6nA 498 :LEFMEMEKEFEQ T0305 18 :NNQHGFSEDFEEVQRCTADM 1q6nA 511 :DKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1q6nA 531 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1q6nA 561 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1q6nA 629 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1q6nA 640 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1q6nA 665 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1q6nA 704 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1q6nA 744 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=5473 Number of alignments=674 # 1q6nA read from 1q6nA/merged-a2m # found chain 1q6nA in template set Warning: unaligning (T0305)M5 because first residue in template chain is (1q6nA)K497 T0305 6 :KQFVKHIGELYS 1q6nA 498 :LEFMEMEKEFEQ T0305 18 :NNQHGFSEDFEEVQRCTADM 1q6nA 511 :DKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1q6nA 531 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1q6nA 561 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1q6nA 629 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1q6nA 640 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1q6nA 665 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1q6nA 704 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1q6nA 744 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=5482 Number of alignments=675 # 1q6nA read from 1q6nA/merged-a2m # found chain 1q6nA in template set T0305 13 :GELYSNNQHGFSEDFEEVQRCTADM 1q6nA 506 :EFEQIDKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1q6nA 531 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1q6nA 561 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1q6nA 629 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1q6nA 640 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1q6nA 665 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1q6nA 704 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAIL 1q6nA 744 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 8 number of extra gaps= 0 total=5490 Number of alignments=676 # 1q6nA read from 1q6nA/merged-a2m # found chain 1q6nA in template set T0305 9 :VKHIGELYS 1q6nA 501 :MEMEKEFEQ T0305 18 :NNQHGFSEDFEEVQRCTADM 1q6nA 511 :DKSGSWAAIYQDIRHEASDF T0305 40 :TAEHSNHPENKHKNRYINILAYDHSRVKLR 1q6nA 531 :PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1q6nA 561 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1q6nA 629 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1q6nA 640 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1q6nA 665 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1q6nA 704 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 1q6nA 744 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGA Number of specific fragments extracted= 9 number of extra gaps= 0 total=5499 Number of alignments=677 # 1q6nA read from 1q6nA/merged-a2m # found chain 1q6nA in template set Warning: unaligning (T0305)M5 because first residue in template chain is (1q6nA)K497 T0305 6 :KQFVKHIGELYSNNQHG 1q6nA 498 :LEFMEMEKEFEQIDKSG T0305 23 :FSEDFEEVQ 1q6nA 516 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1q6nA 525 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1q6nA 564 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1q6nA 629 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1q6nA 640 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1q6nA 665 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1q6nA 706 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1q6nA 744 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=5508 Number of alignments=678 # 1q6nA read from 1q6nA/merged-a2m # found chain 1q6nA in template set Warning: unaligning (T0305)M5 because first residue in template chain is (1q6nA)K497 T0305 6 :KQFVKHIGELYSNNQHG 1q6nA 498 :LEFMEMEKEFEQIDKSG T0305 23 :FSEDFEEVQ 1q6nA 516 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1q6nA 525 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1q6nA 564 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1q6nA 629 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1q6nA 640 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1q6nA 665 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1q6nA 706 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1q6nA 744 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 9 number of extra gaps= 0 total=5517 Number of alignments=679 # 1q6nA read from 1q6nA/merged-a2m # found chain 1q6nA in template set Warning: unaligning (T0305)M5 because first residue in template chain is (1q6nA)K497 T0305 6 :KQFVKHIGELYSNNQHG 1q6nA 498 :LEFMEMEKEFEQIDKSG T0305 23 :FSEDFEEVQ 1q6nA 516 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1q6nA 525 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1q6nA 564 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1q6nA 629 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1q6nA 640 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1q6nA 665 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1q6nA 706 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1q6nA 744 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE Number of specific fragments extracted= 9 number of extra gaps= 0 total=5526 Number of alignments=680 # 1q6nA read from 1q6nA/merged-a2m # found chain 1q6nA in template set T0305 7 :QFVKHIGELYSNNQHG 1q6nA 499 :EFMEMEKEFEQIDKSG T0305 23 :FSEDFEEVQ 1q6nA 516 :WAAIYQDIR T0305 34 :TADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLP 1q6nA 525 :HEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1q6nA 564 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1q6nA 629 :EEKEMIFED T0305 151 :IIVTLKSTKIHACYTVRRFSIRNTK 1q6nA 640 :LKLTLISEDIKSYYTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1q6nA 665 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKST 1q6nA 706 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD T0305 261 :VNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEA 1q6nA 744 :VDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG Number of specific fragments extracted= 9 number of extra gaps= 0 total=5535 Number of alignments=681 # 1q6nA read from 1q6nA/merged-a2m # found chain 1q6nA in template set Warning: unaligning (T0305)K6 because first residue in template chain is (1q6nA)K497 T0305 7 :QFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1q6nA 498 :LEFMEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1q6nA 561 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1q6nA 632 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1q6nA 663 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1q6nA 706 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1q6nA 742 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 6 number of extra gaps= 0 total=5541 Number of alignments=682 # 1q6nA read from 1q6nA/merged-a2m # found chain 1q6nA in template set Warning: unaligning (T0305)K6 because first residue in template chain is (1q6nA)K497 T0305 7 :QFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1q6nA 498 :LEFMEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1q6nA 561 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1q6nA 632 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1q6nA 663 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1q6nA 706 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILG 1q6nA 742 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 6 number of extra gaps= 0 total=5547 Number of alignments=683 # 1q6nA read from 1q6nA/merged-a2m # found chain 1q6nA in template set T0305 22 :GFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1q6nA 513 :SGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1q6nA 561 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1q6nA 632 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1q6nA 663 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1q6nA 706 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1q6nA 742 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=5553 Number of alignments=684 # 1q6nA read from 1q6nA/merged-a2m # found chain 1q6nA in template set T0305 17 :SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLR 1q6nA 508 :EQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPT 1q6nA 561 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQ T0305 143 :ENSEEYGNIIVTLKSTKIHACYTVRRFSIRN 1q6nA 632 :EMIFEDTNLKLTLISEDIKSYYTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1q6nA 663 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1q6nA 706 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLE 1q6nA 742 :SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIE Number of specific fragments extracted= 6 number of extra gaps= 0 total=5559 Number of alignments=685 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1g7fA/merged-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1g7fA expands to /projects/compbio/data/pdb/1g7f.pdb.gz 1g7fA:# T0305 read from 1g7fA/merged-a2m # 1g7fA read from 1g7fA/merged-a2m # adding 1g7fA to template set # found chain 1g7fA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1g7fA)E2 Warning: unaligning (T0305)N38 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)I39 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)K256 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)D257 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 8 :FVKHIGEL 1g7fA 3 :MEKEFEQI T0305 18 :NNQHGFSEDFEEVQRCTADM 1g7fA 11 :DKSGSWAAIYQDIRHEASDF T0305 40 :TA 1g7fA 33 :RV T0305 44 :SNHPENKHKNRYINILAYDHSRVKL 1g7fA 35 :AKLPKNKNRNRYRDVSPFDHSRIKL T0305 75 :DSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSE 1g7fA 60 :HQEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEK T0305 147 :EYGN 1g7fA 134 :IFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIR 1g7fA 153 :YTVRQLELE T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1g7fA 162 :NLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDS 1g7fA 203 :SLSPEHGPVVVHCSAGIGRSGTFCLADT T0305 251 :MLQQI 1g7fA 234 :LMDKR T0305 258 :KSTVNVLGFLK 1g7fA 241 :PSSVDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAILG 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 13 number of extra gaps= 4 total=5572 Number of alignments=686 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1g7fA)E2 Warning: unaligning (T0305)N38 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)I39 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)K256 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)D257 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 8 :FVKHIGEL 1g7fA 3 :MEKEFEQI T0305 18 :NNQHGFSEDFEEVQRCTADM 1g7fA 11 :DKSGSWAAIYQDIRHEASDF T0305 40 :T 1g7fA 33 :R T0305 43 :HSNHPENKHKNRYINILAYDHSRVKL 1g7fA 34 :VAKLPKNKNRNRYRDVSPFDHSRIKL T0305 75 :DSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSE 1g7fA 60 :HQEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEK T0305 147 :EYGN 1g7fA 134 :IFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIR 1g7fA 153 :YTVRQLELE T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1g7fA 162 :NLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDS 1g7fA 203 :SLSPEHGPVVVHCSAGIGRSGTFCLADT T0305 251 :MLQQI 1g7fA 234 :LMDKR T0305 258 :KSTVNVLGFLK 1g7fA 241 :PSSVDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAILG 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 13 number of extra gaps= 4 total=5585 Number of alignments=687 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)N38 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)I39 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)K256 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)D257 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 18 :NNQHGFSEDFEEVQRCTADM 1g7fA 11 :DKSGSWAAIYQDIRHEASDF T0305 40 :TA 1g7fA 33 :RV T0305 44 :SNHPENKHKNRYINILAYDHSRVKL 1g7fA 35 :AKLPKNKNRNRYRDVSPFDHSRIKL T0305 75 :DSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSE 1g7fA 60 :HQEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEK T0305 147 :EYGN 1g7fA 134 :IFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIR 1g7fA 153 :YTVRQLELE T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1g7fA 162 :NLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDS 1g7fA 203 :SLSPEHGPVVVHCSAGIGRSGTFCLADT T0305 251 :MLQQI 1g7fA 234 :LMDKR T0305 258 :KSTVNVLGFLK 1g7fA 241 :PSSVDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAILG 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 12 number of extra gaps= 4 total=5597 Number of alignments=688 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)N38 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)I39 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)K256 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)D257 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 18 :NNQHGFSEDFEEVQRCTADM 1g7fA 11 :DKSGSWAAIYQDIRHEASDF T0305 40 :T 1g7fA 33 :R T0305 43 :HSNHPENKHKNRYINILAYDHSRVKL 1g7fA 34 :VAKLPKNKNRNRYRDVSPFDHSRIKL T0305 75 :DSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSE 1g7fA 60 :HQEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEK T0305 147 :EYGN 1g7fA 134 :IFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIR 1g7fA 153 :YTVRQLELE T0305 184 :PKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1g7fA 162 :NLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDS 1g7fA 203 :SLSPEHGPVVVHCSAGIGRSGTFCLADT T0305 251 :MLQQI 1g7fA 234 :LMDKR T0305 258 :KSTVNVLGFLK 1g7fA 241 :PSSVDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAI 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGA Number of specific fragments extracted= 12 number of extra gaps= 4 total=5609 Number of alignments=689 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)V9 because first residue in template chain is (1g7fA)E2 Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)K256 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)D257 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 10 :KHIGELYSNNQHGFSEDFEEVQRCTA 1g7fA 3 :MEKEFEQIDKSGSWAAIYQDIRHEAS T0305 38 :NI 1g7fA 29 :DF T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1g7fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEYGN 1g7fA 131 :KEMIFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1g7fA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1g7fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1g7fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM T0305 258 :KSTVNVLGFLK 1g7fA 241 :PSSVDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAILG 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 11 number of extra gaps= 4 total=5620 Number of alignments=690 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)K10 because first residue in template chain is (1g7fA)E2 Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)K256 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)D257 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 11 :H 1g7fA 3 :M T0305 12 :IGELYSNNQHGFSEDFEEVQRCTA 1g7fA 5 :KEFEQIDKSGSWAAIYQDIRHEAS T0305 38 :NI 1g7fA 29 :DF T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1g7fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEYGN 1g7fA 131 :KEMIFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1g7fA 153 :YTVRQLELENLT T0305 187 :R 1g7fA 165 :T T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1g7fA 167 :ETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1g7fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM T0305 258 :KSTVNVLGFLK 1g7fA 241 :PSSVDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAILG 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 13 number of extra gaps= 4 total=5633 Number of alignments=691 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)K256 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)D257 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 14 :ELYSNNQHGFSEDFEEVQRCTA 1g7fA 7 :FEQIDKSGSWAAIYQDIRHEAS T0305 38 :NI 1g7fA 29 :DF T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1g7fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEYGN 1g7fA 131 :KEMIFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1g7fA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1g7fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1g7fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM T0305 258 :KSTVNVLGFLK 1g7fA 241 :PSSVDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAIL 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 11 number of extra gaps= 4 total=5644 Number of alignments=692 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)K256 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)D257 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 14 :ELYSNNQHGFSEDFEEVQRCTA 1g7fA 7 :FEQIDKSGSWAAIYQDIRHEAS T0305 38 :NI 1g7fA 29 :DF T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1g7fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEYGN 1g7fA 131 :KEMIFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1g7fA 153 :YTVRQLELENLT T0305 187 :R 1g7fA 165 :T T0305 189 :NERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1g7fA 167 :ETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQI 1g7fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLM T0305 258 :KSTVNVLGFLK 1g7fA 241 :PSSVDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAIL 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 12 number of extra gaps= 4 total=5656 Number of alignments=693 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1g7fA)E2 Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 8 :FVKHIGELYSN 1g7fA 3 :MEKEFEQIDKS T0305 21 :HGFSEDFEEVQRCTAD 1g7fA 14 :GSWAAIYQDIRHEASD T0305 39 :I 1g7fA 30 :F T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLP 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1g7fA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEY 1g7fA 131 :KEMIF T0305 149 :GNIIVTLKSTKIH 1g7fA 138 :TNLKLTLISEDIK T0305 164 :YTVRRFSIRNT 1g7fA 153 :YTVRQLELENL T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1g7fA 164 :TTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1g7fA 203 :SLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLK 1g7fA 242 :SSVDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAIL 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 12 number of extra gaps= 3 total=5668 Number of alignments=694 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 10 :KHIGELYSN 1g7fA 5 :KEFEQIDKS T0305 21 :HGFSEDFEEVQRCTAD 1g7fA 14 :GSWAAIYQDIRHEASD T0305 39 :I 1g7fA 30 :F T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLP 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTE 1g7fA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQK T0305 144 :NSEEY 1g7fA 131 :KEMIF T0305 149 :GNIIVTLKSTKIH 1g7fA 138 :TNLKLTLISEDIK T0305 164 :YTVRRFSIRNT 1g7fA 153 :YTVRQLELENL T0305 186 :GRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSA 1g7fA 164 :TTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRE T0305 223 :ARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1g7fA 203 :SLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 259 :STVNVLGFLK 1g7fA 242 :SSVDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAI 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGA Number of specific fragments extracted= 12 number of extra gaps= 3 total=5680 Number of alignments=695 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)K256 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)D257 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 47 :PENKHKNRYINILAYDHSRVKLR 1g7fA 38 :PKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 1g7fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIH 1g7fA 138 :TNLKLTLISEDIK T0305 164 :YTVRRFSIRNTKV 1g7fA 153 :YTVRQLELENLTT T0305 188 :QNERVVIQYHYTQWPDMGVPEYALPVLTFV 1g7fA 166 :QETREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1g7fA 198 :VRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCL T0305 253 :QQI 1g7fA 236 :DKR T0305 258 :KSTVNVLGFLK 1g7fA 241 :PSSVDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEA 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEG Number of specific fragments extracted= 9 number of extra gaps= 3 total=5689 Number of alignments=696 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)K256 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)D257 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEY 1g7fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM T0305 149 :GNIIVTLKSTKIH 1g7fA 138 :TNLKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1g7fA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFV 1g7fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFL T0305 218 :RRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSML 1g7fA 198 :VRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCL T0305 253 :QQI 1g7fA 236 :DKR T0305 258 :KSTVNVLGFLK 1g7fA 241 :PSSVDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEA 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEG Number of specific fragments extracted= 9 number of extra gaps= 3 total=5698 Number of alignments=697 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)V9 because first residue in template chain is (1g7fA)E2 Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 10 :KHIGELYSNNQHGFSEDFEEVQRCTADM 1g7fA 3 :MEKEFEQIDKSGSWAAIYQDIRHEASDF T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1g7fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1g7fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1g7fA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1g7fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1g7fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 261 :VNVLGFLK 1g7fA 244 :VDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAILG 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 10 number of extra gaps= 4 total=5708 Number of alignments=698 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1g7fA)E2 Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 8 :FVKHIGEL 1g7fA 3 :MEKEFEQI T0305 18 :NNQHGFSEDFEEVQRCTADM 1g7fA 11 :DKSGSWAAIYQDIRHEASDF T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1g7fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1g7fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1g7fA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1g7fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1g7fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 261 :VNVLGFLK 1g7fA 244 :VDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAILG 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 11 number of extra gaps= 4 total=5719 Number of alignments=699 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1g7fA)E2 Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 8 :FVKHIGELYSNNQ 1g7fA 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQRCTADM 1g7fA 16 :WAAIYQDIRHEASDF T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1g7fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYG 1g7fA 129 :EEKEMIFE T0305 150 :NIIVTLKSTKIH 1g7fA 139 :NLKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1g7fA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1g7fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1g7fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 261 :VNVLGFLK 1g7fA 244 :VDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLE 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIE T0305 294 :AILG 1g7fA 280 :FIMG Number of specific fragments extracted= 12 number of extra gaps= 4 total=5731 Number of alignments=700 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1g7fA)E2 Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 8 :FVKHIGELYSN 1g7fA 3 :MEKEFEQIDKS T0305 21 :HGFSEDFEEVQRCTADM 1g7fA 14 :GSWAAIYQDIRHEASDF T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1g7fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1g7fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRN 1g7fA 153 :YTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1g7fA 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1g7fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 261 :VNVLGFLK 1g7fA 244 :VDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLE 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIE T0305 294 :AILG 1g7fA 280 :FIMG Number of specific fragments extracted= 12 number of extra gaps= 4 total=5743 Number of alignments=701 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 13 :GELYSNNQHGFSEDFEEVQRCTADM 1g7fA 6 :EFEQIDKSGSWAAIYQDIRHEASDF T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1g7fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1g7fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1g7fA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1g7fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1g7fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 261 :VNVLGFLK 1g7fA 244 :VDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAIL 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 10 number of extra gaps= 4 total=5753 Number of alignments=702 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 18 :NNQHGFSEDFEEVQRCTADM 1g7fA 11 :DKSGSWAAIYQDIRHEASDF T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1g7fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1g7fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1g7fA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1g7fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1g7fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 261 :VNVLGFLK 1g7fA 244 :VDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAI 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGA Number of specific fragments extracted= 10 number of extra gaps= 4 total=5763 Number of alignments=703 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1g7fA)E2 Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 8 :FVKHIGELYSNNQ 1g7fA 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQRCTADM 1g7fA 16 :WAAIYQDIRHEASDF T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1g7fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYG 1g7fA 129 :EEKEMIFE T0305 150 :NIIVTLKSTKIH 1g7fA 139 :NLKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1g7fA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1g7fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1g7fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 261 :VNVLGFLK 1g7fA 244 :VDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAIL 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 11 number of extra gaps= 4 total=5774 Number of alignments=704 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1g7fA)E2 Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 8 :FVKHIGELYS 1g7fA 3 :MEKEFEQIDK T0305 20 :QHGFSEDFEEVQRCTADM 1g7fA 13 :SGSWAAIYQDIRHEASDF T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLR 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLH T0305 76 :SKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1g7fA 61 :QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1g7fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRN 1g7fA 153 :YTVRQLELEN T0305 185 :KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAA 1g7fA 163 :LTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRES T0305 224 :RMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1g7fA 204 :LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 261 :VNVLGFLK 1g7fA 244 :VDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAIL 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGAK Number of specific fragments extracted= 11 number of extra gaps= 4 total=5785 Number of alignments=705 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1g7fA)E2 Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 8 :FVKHIGELYSNNQ 1g7fA 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1g7fA 16 :WAAIYQDIR T0305 34 :TADMNI 1g7fA 25 :HEASDF T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLP 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1g7fA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1g7fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1g7fA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1g7fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1g7fA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 261 :VNVLGFLK 1g7fA 244 :VDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAILG 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 12 number of extra gaps= 4 total=5797 Number of alignments=706 # 1g7fA read from 1g7fA/merged-a2m # found chain 1g7fA in template set Warning: unaligning (T0305)Q7 because first residue in template chain is (1g7fA)E2 Warning: unaligning (T0305)T40 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)C32 Warning: unaligning (T0305)A41 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)C32 Warning: unaligning (T0305)A162 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)Y152 Warning: unaligning (T0305)C163 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)Y152 Warning: unaligning (T0305)S259 because of BadResidue code BAD_PEPTIDE in next template residue (1g7fA)D240 Warning: unaligning (T0305)T260 because of BadResidue code BAD_PEPTIDE at template residue (1g7fA)D240 Warning: unaligning (T0305)H269 because of BadResidue code TOO_FEW_ATOMS+HAS_UNKNOWN_ATOMS at template residue (1g7fA)E252 T0305 8 :FVKHIGELYSNNQ 1g7fA 3 :MEKEFEQIDKSGS T0305 23 :FSEDFEEVQ 1g7fA 16 :WAAIYQDIR T0305 34 :TADMNI 1g7fA 25 :HEASDF T0305 42 :EHSNHPENKHKNRYINILAYDHSRVKLRPLP 1g7fA 33 :RVAKLPKNKNRNRYRDVSPFDHSRIKLHQED T0305 79 :SDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP 1g7fA 64 :NDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP T0305 142 :TENSEEYGN 1g7fA 129 :EEKEMIFED T0305 151 :IIVTLKSTKIH 1g7fA 140 :LKLTLISEDIK T0305 164 :YTVRRFSIRNTK 1g7fA 153 :YTVRQLELENLT T0305 187 :RQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARM 1g7fA 165 :TQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGS T0305 226 :PETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDK 1g7fA 206 :PEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKR T0305 261 :VNVLGFLK 1g7fA 244 :VDIKKVLL T0305 270 :IRTQRNYLVQTEEQYIFIHDALLEAILG 1g7fA 253 :MRKFRMGLIQTADQLRFSYLAVIEGAKF Number of specific fragments extracted= 12 number of extra gaps= 4 total=5809 Number of alignments=707 # 1g7fA read from 1g7fA