# List of top-scoring protein chains for T0300.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1debA 54 2.62e-02 1debA h.1.18.1 45660 1u2uA 32 1.39e-01 1p9iA 31 3.32e-01 h.1.10.1 94390 1hkkA 364 3.44e-01 c.1.8.5,d.26.3.1 90634,90635 1hkmA 365 3.46e-01 c.1.8.5,d.26.3.1 90636,90637 1lg2A 365 3.46e-01 c.1.8.5,d.26.3.1 77950,77951 1guvA 366 3.51e-01 c.1.8.5,d.26.3.1 83333,83334 1wb0A 445 5.45e-01 1azsA 220 7.19e-01 1azsA d.58.29.1 39416 1culA 217 7.22e-01 1azsA d.58.29.1 39417 1cs4A 225 7.29e-01 1azsA d.58.29.1 39418 1q8kA 308 9.79e-01 b.40.4.5,d.58.51.1 104556,104557 1itxA 419 1.37e+00 c.1.8.5,d.26.3.1 71425,71426 1vf8A 377 2.28e+00 1fmhA 33 2.56e+00 1fmhB k.6.1.1 46409 1ns5A 155 4.08e+00 c.116.1.3 80705 1u2uB 32 4.09e+00 1eg3A 261 4.62e+00 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2az4A 429 5.14e+00 1md7A 328 5.18e+00 b.47.1.2,g.18.1.1 91243,91244 1md8A 329 5.22e+00 b.47.1.2,g.18.1.1 91245,91246 1olmA 403 5.35e+00 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1olmE 403 5.95e+00 a.5.3.1,b.132.1.1,c.13.1.1 104014,104015,104016 1zhjA 297 6.31e+00 1zizA 293 6.60e+00 1gpzA 399 6.73e+00 b.47.1.2,g.18.1.1,g.18.1.1 70302,70303,70304 1r82A 283 6.74e+00 c.68.1.9 97217 1lzjA 292 6.88e+00 c.68.1.9 74352 1wt1A 292 6.91e+00 1zi4A 294 6.97e+00 1zi5A 293 7.29e+00 1r7yA 283 7.43e+00 c.68.1.9 97214 1lziA 292 7.59e+00 c.68.1.9 74351 1vqoG 348 7.92e+00 1q35A 320 8.72e+00 c.94.1.1 95661 1dofA 403 9.04e+00 1c3cA a.127.1.1 19429 1og6A 298 9.91e+00 c.1.7.1 86984 1yocA 147 1.01e+01 1ur3M 319 1.02e+01 c.1.7.1 99806 1lsi 66 1.03e+01 3ebx g.7.1.1 44422 2cw9A 194 1.04e+01 1tmzA 32 1.27e+01 1tmzA k.1.1.1 46376 1mruA 311 1.36e+01 d.144.1.7 79425 1p4wA 99 1.41e+01 a.4.6.2 87783 1h67A 108 1.47e+01 a.40.1.1 65643 1jalA 363 1.52e+01 c.37.1.8,d.15.10.2 84138,84139 1t6fA 37 1.57e+01 h.1.28.1 106565 1t5bA 201 1.62e+01 c.23.5.3 106433 2hlpA 303 1.68e+01 1ceqA c.2.1.5,d.162.1.1 30141,42108 2bskB 90 1.68e+01 1v4bA 200 1.80e+01 1v5fA 589 1.84e+01 1v5eA 590 1.88e+01 1i8lA 208 1.88e+01 1dr9A b.1.1.1,b.1.1.3 61970,61971 1tikA 213 1.89e+01 c.23.5.3 107003 1dr9A 201 1.89e+01 1dr9A b.1.1.1,b.1.1.3 19762,21684 1p65A 73 1.91e+01 d.254.1.1 94156 1s1cX 71 1.97e+01 h.1.27.1 98342 2mtaC 147 2.03e+01 2mtaC a.3.1.1 15908 1wnoA 395 2.04e+01 1tp4A 97 2.07e+01 a.189.1.1 107183 1mg2D 155 2.08e+01 a.3.1.1 79062 1mvwB 145 2.08e+01 i.15.1.1 79524 1sb2A 133 2.09e+01 1hr0W 71 2.11e+01 1ah9 b.40.4.5 25329 1w9pA 433 2.13e+01 1nwbA 124 2.13e+01 b.124.1.1 86296 2etlA 228 2.21e+01 1kfwA 435 2.22e+01 c.1.8.5,d.26.3.1 77376,77377 1xvxA 312 2.24e+01 1wt3A 292 2.40e+01 2mysB 166 2.41e+01 1wdcB a.39.1.5 17308 1xvyA 309 2.46e+01 1go4E 100 2.60e+01 h.1.22.1 70296 1wszA 292 2.65e+01 2aw4X 63 2.67e+01 1hruA 188 2.81e+01 1hruA d.115.1.1 40926 1ce9A 34 2.82e+01 1ce9C h.1.3.1 45483 2bflA 227 2.93e+01 1pb6A 212 3.11e+01 a.4.1.9,a.121.1.1 88017,88018 1mzpA 217 3.13e+01 e.24.1.1 79710 1js8A 394 3.16e+01 a.86.1.1,b.112.1.1 67219,67220 2g0tA 350 3.17e+01 1h47A 161 3.21e+01 1m8pA 573 3.21e+01 b.122.1.3,c.26.1.5,c.37.1.15 78777,78778,78779 1jmtB 28 3.21e+01 1i2dA 573 3.25e+01 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 61556,61557,61558 1gx1A 160 3.28e+01 d.79.5.1 70675 2amtA 159 3.29e+01 1t01A 255 3.34e+01 a.24.9.1,a.24.9.1 106188,106189 1yqnA 161 3.38e+01 2fazA 78 3.45e+01 1zvzA 279 3.55e+01 1u6hA 280 3.58e+01 1hbxA 92 3.63e+01 1mnmA d.88.1.1 60930 1yiqA 689 3.64e+01 1mknA 59 3.66e+01 1mknA g.5.1.1 44383 2aw4G 176 3.74e+01 1eg0D 146 3.84e+01 1rss i.1.1.1 45810 1o6dA 163 3.86e+01 c.116.1.3 92567 1fkaG 151 3.90e+01 i.1.1.3 45850 1n32G 155 3.91e+01 a.75.1.1 79876 1wlqA 83 3.92e+01 h.1.28.1 109398 1fjgG 156 3.92e+01 1rss a.75.1.1 18394 1x18F 154 3.93e+01 1k6oB 103 3.97e+01 d.88.1.1 68227 1hleA 345 3.97e+01 1ovaA e.1.1.1 42618 1ci6B 63 4.10e+01 1ci6B h.1.3.1 45549 1jw2A 72 4.11e+01 a.23.5.1 67372 1lp1A 58 4.15e+01 a.8.1.1 84664 1x1pA 212 4.21e+01 2aucA 126 4.22e+01 1rss 151 4.24e+01 1rss a.75.1.1 18392 2b8tA 223 4.26e+01 1wbpA 397 4.27e+01 1rkeA 262 4.40e+01 a.24.9.1,a.24.9.1 97608,97609 1ydiA 263 4.40e+01 1io2A 213 4.40e+01 1ekeA c.55.3.1 62612 1syqA 264 4.41e+01 a.24.9.1,a.24.9.1 106124,106125 1oqyA 368 4.47e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1xmrA 243 4.51e+01 1q1gA 276 4.63e+01 c.56.2.1 95574 1wguA 136 4.64e+01 2ghpA 292 4.68e+01 2agcA 162 4.69e+01 1uiiA 83 4.81e+01 h.1.28.1 107864 1ah9 71 4.90e+01 1ah9 b.40.4.5 25330 1lp3A 519 4.92e+01 b.121.5.2 74169 1h89A 64 5.02e+01 h.1.3.1 65724 1bmc 221 5.05e+01 1a7tA d.157.1.1 42038 1konA 249 5.08e+01 e.39.1.1 72823 2bleA 367 5.15e+01 1h54A 754 5.20e+01 a.102.1.4,b.30.5.3 60634,60635 1bp1 456 5.29e+01 1bp1 d.83.1.1,d.83.1.1 40026,40027 1dv4G 135 5.35e+01 i.1.1.3 45876 1mqoA 227 5.48e+01 d.157.1.1 103846 1dtdA 303 5.49e+01 1aye c.56.5.1 33823 1dxkA 227 5.58e+01 1a7tA d.157.1.1 42036 1z72A 225 5.60e+01 1bbpA 173 5.62e+01 1bbpA b.60.1.1 27147 2a6bA 234 5.65e+01 1ytaA 180 5.67e+01 1o6zA 303 5.75e+01 c.2.1.5,d.162.1.1 81107,81108 2govA 195 6.09e+01 1xm9A 457 6.12e+01 1mwqA 101 6.20e+01 d.58.4.7 91481 1kxu 333 6.33e+01 1jkw a.74.1.1,a.74.1.1 18358,18359 1jkw 323 6.36e+01 1jkw a.74.1.1,a.74.1.1 18356,18357 1ewfA 456 6.50e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1xiyA 182 6.56e+01 1zjkA 403 6.57e+01 2a6xA 226 6.62e+01 2a6vA 226 6.62e+01 2ts1 419 6.68e+01 2ts1 c.26.1.1 31564 1bdfA 235 6.79e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1yf2A 425 6.87e+01 1q8bA 105 6.92e+01 d.58.4.6 96201 1wyrA 121 7.13e+01 1aye 401 7.17e+01 1aye c.56.5.1,d.58.3.1 33824,39065 1hjbA 87 7.24e+01 1hjbA h.1.3.1 61073 1h4xA 117 7.26e+01 1auz c.13.2.1 60626 1h4yA 117 7.28e+01 1auz c.13.2.1 60628 1wmiB 67 7.36e+01 1kd9A 36 7.45e+01 h.1.3.1 68466 1zr0B 63 7.47e+01 1tidB 119 7.62e+01 c.13.2.1 107000 1e6zA 498 7.74e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59330,59331,59332 2aj2A 208 7.75e+01 1o6iA 499 7.75e+01 b.72.2.1,c.1.8.5,d.26.3.1 86630,86631,86632 1z9bA 135 7.76e+01 1h0iA 499 7.78e+01 b.72.2.1,c.1.8.5,d.26.3.1 70838,70839,70840 1ogbA 499 7.81e+01 b.72.2.1,c.1.8.5,d.26.3.1 92882,92883,92884 1ur9A 499 7.82e+01 b.72.2.1,c.1.8.5,d.26.3.1 99819,99820,99821 1hqvA 191 7.85e+01 1hqvA a.39.1.8 61160 1goiA 499 7.86e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1h5oA 42 7.87e+01 g.9.1.2 83484 1kddA 36 7.87e+01 h.1.3.1 68472 1th8B 116 7.89e+01 c.13.2.1 106909 1e6pA 499 7.90e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 2sas 185 8.08e+01 2sas a.39.1.5 17258 1lssA 140 8.13e+01 c.2.1.9 74246 1ld4E 57 8.17e+01 i.6.1.1 77890 1syyA 346 8.18e+01 a.25.1.2 106126 1ysaC 57 8.24e+01 2dgcA h.1.3.1 45507 1ds6B 180 8.32e+01 1rhoA b.1.18.8 21898 1gu4A 78 8.33e+01 h.1.3.1 83317 1vrvA 101 8.39e+01 1xx9A 238 8.41e+01 1tt7A 330 8.43e+01 1d2kA 392 8.47e+01 1d2kA c.1.8.5,d.26.3.1 29008,38442 1ymtA 246 8.49e+01 1wjrA 127 8.50e+01 1ll6A 392 8.60e+01 c.1.8.5,d.26.3.1 78077,78078 1zhmA 238 8.63e+01 1ysaD 57 8.67e+01 2dgcA h.1.3.1 45508 1dgcA 62 8.67e+01 2dgcA h.1.3.1 45506 1ll7A 392 8.67e+01 c.1.8.5,d.26.3.1 78085,78086 1d3aA 303 8.78e+01 1ceqA c.2.1.5,d.162.1.1 30143,42110 2dgcA 63 8.80e+01 2dgcA h.1.3.1 45497 1vkjA 285 8.84e+01 c.37.1.5 108666 1sj5A 164 8.84e+01 1rykA 69 8.93e+01 a.60.11.1 98105 1yvwA 115 8.95e+01