# List of top-scoring protein chains for T0299.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1n71A 180 1.30e+00 d.108.1.1 85370 1b87A 181 1.30e+00 1b87A d.108.1.1 40797 2a4nA 182 1.31e+00 1ufrA 181 2.72e+00 c.61.1.1 99354 1rcuA 195 3.88e+00 c.129.1.1 97295 1zbrA 349 6.00e+00 1e6iA 121 7.16e+00 1b91A a.29.2.1 16969 1zghA 260 7.36e+00 1i8fA 81 1.11e+01 1i8fA b.38.1.1 61959 1y6jA 318 1.18e+01 1iwmA 186 1.30e+01 b.125.1.2 83758 1j2rA 199 1.51e+01 c.33.1.3 90788 1xfiA 367 1.62e+01 e.50.1.1 109584 1p8dA 250 1.91e+01 a.123.1.1 87941 1pq9A 253 1.92e+01 a.123.1.1 95004 1upvA 257 1.93e+01 2cg4A 152 2.02e+01 2f1dA 207 2.03e+01 1z9uA 179 2.12e+01 1s7kA 182 2.15e+01 1orvA 728 2.16e+01 b.70.3.1,c.69.1.24 87354,87355 1uarA 285 2.20e+01 c.46.1.2,c.46.1.2 107762,107763 1i8tA 367 2.25e+01 c.4.1.3,d.16.1.7 66094,66095 1e0jA 289 2.30e+01 1cr1A c.37.1.11 32290 1aj8A 371 2.31e+01 1aj8A a.103.1.1 18900 1cr1A 296 2.33e+01 1cr1A c.37.1.11 32286 2abk 211 2.39e+01 2abk a.96.1.1 18743 1s7fA 199 2.41e+01 1liyA 528 2.45e+01 b.58.1.1,c.1.12.1,c.49.1.1 78006,78007,78008 1liuA 528 2.47e+01 b.58.1.1,c.1.12.1,c.49.1.1 77970,77971,77972 1liwA 528 2.47e+01 b.58.1.1,c.1.12.1,c.49.1.1 77982,77983,77984 1lixA 528 2.52e+01 b.58.1.1,c.1.12.1,c.49.1.1 77994,77995,77996 2g6tA 306 2.64e+01 1yv9A 264 2.76e+01 1v73A 342 2.91e+01 1tu2B 254 2.97e+01 1a3c 181 3.04e+01 1a3c c.61.1.1 34095 1z0hA 438 3.35e+01 1fo5A 85 3.44e+01 1fo5A c.47.1.1 59922 2a74A 643 3.45e+01 1eqcA 394 3.47e+01 1cz1A c.1.8.3 28811 1eqpA 394 3.47e+01 1cz1A c.1.8.3 28812 1gz3A 554 3.64e+01 c.2.1.7,c.58.1.3 83393,83394 2b1eA 564 3.72e+01 2b7mA 566 3.73e+01 1qycA 308 3.82e+01 c.2.1.2 96581 2btwB 254 3.97e+01 1j05A 111 3.97e+01 b.1.1.1 90735 2bu3A 254 4.07e+01 1i4k1 77 4.17e+01 1i8fA 1d3bB 91 4.18e+01 1d3bB b.38.1.1 24804 2arhA 203 4.25e+01 1bqcA 302 4.31e+01 1bqcA c.1.8.3 28831 1kooA 277 4.41e+01 c.10.2.3,d.58.7.2 68726,68727 1s4vA 229 4.56e+01 d.3.1.1 98511 1moeA 240 4.74e+01 b.1.1.1,b.1.1.1 85030,85031 1k6mA 432 5.01e+01 c.37.1.7,c.60.1.4 77275,77276 3bifA 468 5.06e+01 1bif c.37.1.7,c.60.1.4 31962,34008 1bif 469 5.07e+01 1bif c.37.1.7,c.60.1.4 31961,34003 2bifA 469 5.07e+01 1bif c.37.1.7,c.60.1.4 31963,34009 2c0nA 203 5.15e+01 1rf8A 213 5.32e+01 d.86.1.1 97370 1gzqA 300 5.37e+01 b.1.1.2,d.19.1.1 70818,70819 1z5nA 242 5.44e+01 1fbtA 190 5.45e+01 1bif c.60.1.4 34004 1c80A 191 5.45e+01 c.60.1.4 83162 2f20A 240 5.72e+01 1wyjA 125 5.75e+01 1fp1D 372 5.83e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1vcsA 102 5.92e+01 1gz4A 551 5.98e+01 c.2.1.7,c.58.1.3 70794,70795 1mozA 183 6.11e+01 c.37.1.8 79368 1pj3A 564 6.24e+01 c.2.1.7,c.58.1.3 94726,94727 1k68A 140 6.33e+01 c.23.1.1 90943 1cqmA 101 6.47e+01 1ris d.58.14.1 39321 1qr6A 584 6.51e+01 1qr6A c.2.1.7,c.58.1.3 30293,33941 2av4A 160 6.53e+01 1v25A 541 6.61e+01 e.23.1.1 108275 1z9vA 121 6.92e+01 2bvfA 459 7.09e+01 1vbgA 876 7.10e+01 1wlsA 328 7.19e+01 2b82A 211 7.42e+01 2f9sA 151 7.43e+01 1kohA 277 7.46e+01 c.10.2.3,d.58.7.2 68719,68720 1rmtA 212 7.49e+01 1a0i 348 7.49e+01 1a0i b.40.4.6,d.142.2.1 25363,41577 1ooyA 481 7.54e+01 c.124.1.3,c.124.1.2 93388,93389 1qapA 296 7.76e+01 1qpoA c.1.17.1,d.41.2.1 29559,38595 1v5lA 103 7.77e+01 b.36.1.1 108378 1b2pA 119 7.91e+01 1b2pA b.78.1.1 27998 1jv2A 957 7.92e+01 b.1.15.1,b.1.15.1,b.1.15.1,b.69.8.1 67334,67335,67336,67337 1yb5A 351 7.98e+01 1zblA 139 8.14e+01 1k1sA 354 8.21e+01 d.240.1.1,e.8.1.7 90386,90387 2g8iA 142 8.23e+01 2g8fA 142 8.23e+01 1qy9A 297 8.28e+01 d.21.1.2,d.21.1.2 104645,104646 1czkA 169 8.32e+01 1rcf c.23.5.1 31186 2d13A 227 8.37e+01 1eqfA 280 8.43e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1jysA 242 8.43e+01 c.56.2.1 77216 1ap8 213 8.65e+01 1ap8 d.86.1.1 40151 2bwjA 199 8.66e+01 1sdjA 310 8.68e+01 d.21.1.2,d.21.1.2 98807,98808 1qyaA 307 8.77e+01 d.21.1.2,d.21.1.2 104653,104654 1q57A 503 8.99e+01 c.37.1.11,e.13.1.2 95867,95868