CASPDIR="/projects/compbio/experiments/protein-predict/casp7"

# Extract the constraints from the alignments
../programs/undertaker < meta.under >& out
cat out|grep Constraint|gawk -f ../scripts/normalize.awk > metaconstraints.under
cat out|grep RES2ATOM > metares2cbatom.dat
cp out makingmetaconstraints.log
rm -rf out

cp metaconstraints.under temp
echo "SetCost constraints 1" >> temp
cp temp $CASPDIR/T0283/constraints-meta.costfcn