# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0384/ # command:# Making conformation for sequence T0384 numbered 1 through 325 Created new target T0384 from T0384.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0384/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0384//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0384/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0384//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0384/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0384/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0384/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1r0kA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1r0kA expands to /projects/compbio/data/pdb/1r0k.pdb.gz 1r0kA:# T0384 read from 1r0kA/merged-good-all-a2m # 1r0kA read from 1r0kA/merged-good-all-a2m # adding 1r0kA to template set # found chain 1r0kA in template set T0384 1 :MLKLGVIGT 1r0kA 4 :PRTVTVLGA # choosing archetypes in rotamer library T0384 10 :GAISHHFIEAAHT 1r0kA 14 :GSIGHSTLDLIER T0384 23 :SGEYQLVAIYS 1r0kA 28 :LDRYQVIALTA T0384 34 :RKLETAATFASRYQ 1r0kA 40 :RNVKDLADAAKRTN T0384 48 :NIQLFDQLEVFFK 1r0kA 76 :SVEAAAGADALVE T0384 61 :SSFDLVYIASPNSLHFAQAKAALSAGKHVIL 1r0kA 92 :MGADWTMAAIIGCAGLKATLAAIRKGKTVAL T0384 95 :AV 1r0kA 130 :SA T0384 102 :WFDLIQTAEKNNCFIFEAA 1r0kA 132 :GGLMIDAVREHGTTLLPVD T0384 126 :KAFTTIKNFLADKQ 1r0kA 151 :SEHNAIFQCFPHHN T0384 141 :LG 1r0kA 165 :RD T0384 144 :DFNYAKYSSKMPDLLAGQT 1r0kA 167 :YVRRIIITASGGPFRTTSL T0384 173 :GALMDLGIYPLY 1r0kA 213 :ATMMNKGLELIE T0384 186 :AVRLFG 1r0kA 225 :AFHLFQ T0384 192 :KANDATYHAQQL 1r0kA 232 :PLEKFEILVHPQ T0384 209 :LNGDGILFYPDYQVHIKAGKN 1r0kA 244 :SVIHSMVEYLDGSILAQIGSP T0384 264 :NQVQLPIQQAPH 1r0kA 278 :KRMETPAESLDF T0384 276 :TMTEEVAAFAHMIQ 1r0kA 342 :GFLDIAKIVEKTLD Number of specific fragments extracted= 17 number of extra gaps= 0 total=17 Number of alignments=1 # 1r0kA read from 1r0kA/merged-good-all-a2m # found chain 1r0kA in template set Warning: unaligning (T0384)G160 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1r0kA)G205 Warning: unaligning (T0384)S167 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r0kA)G205 T0384 1 :MLKLGVIGT 1r0kA 4 :PRTVTVLGA T0384 10 :GAISHHFIEAAHTS 1r0kA 14 :GSIGHSTLDLIERN T0384 24 :GEYQLVAIYS 1r0kA 29 :DRYQVIALTA T0384 34 :RKLETAATFASRYQNI 1r0kA 40 :RNVKDLADAAKRTNAK T0384 50 :QLFDQLEVFFK 1r0kA 63 :SLYNDLKEALA T0384 61 :S 1r0kA 91 :M T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILE 1r0kA 93 :GADWTMAAIIGCAGLKATLAAIRKGKTVALA T0384 95 :AV 1r0kA 130 :SA T0384 102 :WFDLIQTAEKNNCFIFEA 1r0kA 132 :GGLMIDAVREHGTTLLPV T0384 125 :EKAFTTIKNFL 1r0kA 150 :DSEHNAIFQCF T0384 137 :DKQVLG 1r0kA 161 :PHHNRD T0384 143 :ADFNYAKYSSK 1r0kA 168 :VRRIIITASGG T0384 154 :MPDLLA 1r0kA 192 :TPERAV T0384 168 :DRF 1r0kA 206 :AKI T0384 171 :AGGALMDLGIYPLY 1r0kA 211 :DSATMMNKGLELIE T0384 186 :AVRLFG 1r0kA 225 :AFHLFQ T0384 192 :KANDATYHAQQLD 1r0kA 232 :PLEKFEILVHPQS T0384 210 :NGDGILFYPDYQVHIKAGKN 1r0kA 245 :VIHSMVEYLDGSILAQIGSP T0384 253 :IRS 1r0kA 265 :DMR T0384 265 :QVQLPIQQAP 1r0kA 279 :RMETPAESLD T0384 275 :HTMTEEVAAFAHMIQQPDLN 1r0kA 323 :AVMNAANEIAVAAFLDKKIG Number of specific fragments extracted= 21 number of extra gaps= 0 total=38 Number of alignments=2 # 1r0kA read from 1r0kA/merged-good-all-a2m # found chain 1r0kA in template set Warning: unaligning (T0384)V165 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1r0kA)G205 T0384 1 :MLKLGVIGT 1r0kA 4 :PRTVTVLGA T0384 10 :GAISHHFIEAAHTS 1r0kA 14 :GSIGHSTLDLIERN T0384 24 :GEYQLVAIYS 1r0kA 29 :DRYQVIALTA T0384 34 :RKLETAATFASRYQN 1r0kA 40 :RNVKDLADAAKRTNA T0384 49 :IQLFDQLEVFF 1r0kA 77 :VEAAAGADALV T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGKHVILEK 1r0kA 91 :MMGADWTMAAIIGCAGLKATLAAIRKGKTVALAN T0384 102 :WFDLIQTAEKNNCFIFEA 1r0kA 132 :GGLMIDAVREHGTTLLPV T0384 125 :EKAFTTIKNFLADKQVLGADFNYAKYSSKMPDLLA 1r0kA 150 :DSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTS T0384 166 :FSDRFAGGALMDLGIYPLYA 1r0kA 206 :AKISIDSATMMNKGLELIEA T0384 187 :VRLFGKANDATYHAQQL 1r0kA 226 :FHLFQIPLEKFEILVHP T0384 208 :DLNGDGILFYPDYQVHIKAGKNIT 1r0kA 243 :QSVIHSMVEYLDGSILAQIGSPDM T0384 251 :EHIRSAIFT 1r0kA 277 :PKRMETPAE T0384 263 :GNQVQLPIQQAPHT 1r0kA 292 :LRQMDFEAPDYERF T0384 279 :EEVAAFAHMIQQPD 1r0kA 306 :PALTLAMESIKSGG T0384 298 :TWLYDAGSVHELLYTMRQTA 1r0kA 320 :ARPAVMNAANEIAVAAFLDK Number of specific fragments extracted= 15 number of extra gaps= 0 total=53 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b4rO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2b4rO expands to /projects/compbio/data/pdb/2b4r.pdb.gz 2b4rO:# T0384 read from 2b4rO/merged-good-all-a2m # 2b4rO read from 2b4rO/merged-good-all-a2m # adding 2b4rO to template set # found chain 2b4rO in template set Warning: unaligning (T0384)G173 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2b4rO)I209 T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSR 2b4rO 4 :TKLGINGFGRIGRLVFRAAFGRKDIEVVAINDP T0384 35 :KLETAATFASRYQ 2b4rO 39 :DLNHLCYLLKYDS T0384 48 :NIQLFDQLEVF 2b4rO 75 :SVFAEKDPSQI T0384 61 :S 2b4rO 86 :P T0384 62 :SFDLVYIASPNSLHFAQAKAALSAG 2b4rO 91 :QVDVVCESTGVFLTKELASSHLKGG T0384 87 :KHVILEKPAVSQ 2b4rO 117 :KKVIMSAPPKDD T0384 112 :NNCFIFEAARNYHEKAFTTIKNFLAD 2b4rO 143 :TKQLIVSNASCTTNCLAPLAKVINDR T0384 141 :L 2b4rO 169 :F T0384 144 :DFNYAKYS 2b4rO 170 :GIVEGLMT T0384 152 :SKMPDLLAGQ 2b4rO 188 :VVDGPSKGGK T0384 163 :PNVFSDRFAG 2b4rO 198 :DWRAGRCALS T0384 180 :IYPLYAAVRLFGKAN 2b4rO 214 :TGAAKAVGKVLPELN T0384 195 :DATYHAQQLDNSIDLNGDGILFYPD 2b4rO 230 :KLTGVAFRVPIGTVSVVDLVCRLQK T0384 220 :Y 2b4rO 295 :S T0384 221 :QVHIKAGKNITSN 2b4rO 297 :IFDMKAGLALNDN T0384 234 :LPCEIYTT 2b4rO 311 :FKLVSWYD T0384 299 :WLYDAGSVHELLYTMR 2b4rO 320 :EWGYSNRVLDLAVHIT Number of specific fragments extracted= 17 number of extra gaps= 1 total=70 Number of alignments=4 # 2b4rO read from 2b4rO/merged-good-all-a2m # found chain 2b4rO in template set Warning: unaligning (T0384)G173 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2b4rO)I209 Warning: unaligning (T0384)A174 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2b4rO)I209 T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSR 2b4rO 4 :TKLGINGFGRIGRLVFRAAFGRKDIEVVAINDP T0384 35 :KLETAATFAS 2b4rO 39 :DLNHLCYLLK T0384 48 :NI 2b4rO 49 :YD T0384 50 :QLFDQLEVF 2b4rO 77 :FAEKDPSQI T0384 59 :FKS 2b4rO 87 :WGK T0384 62 :SFDLVYIASPNSLHFAQAKAALSAG 2b4rO 91 :QVDVVCESTGVFLTKELASSHLKGG T0384 87 :KHVILEKPAV 2b4rO 117 :KKVIMSAPPK T0384 97 :SQ 2b4rO 141 :YD T0384 112 :NNCFIFEAAR 2b4rO 143 :TKQLIVSNAS T0384 123 :YHEKAFTTIKNFL 2b4rO 153 :CTTNCLAPLAKVI T0384 138 :KQVLGADFNYAKYSSK 2b4rO 166 :NDRFGIVEGLMTTVHA T0384 154 :MPDLLAGQTPNVFSDRFAG 2b4rO 189 :VDGPSKGGKDWRAGRCALS T0384 175 :L 2b4rO 210 :I T0384 180 :IYPLYAAVRLFGKAN 2b4rO 214 :TGAAKAVGKVLPELN T0384 195 :DATYHAQQLDNSIDLNGDGILFYPDY 2b4rO 230 :KLTGVAFRVPIGTVSVVDLVCRLQKP T0384 275 :HTMTEEVAAFAHMIQQPDLNLYQT 2b4rO 256 :AKYEEVALEIKKAAEGPLKGILGY Number of specific fragments extracted= 16 number of extra gaps= 1 total=86 Number of alignments=5 # 2b4rO read from 2b4rO/merged-good-all-a2m # found chain 2b4rO in template set Warning: unaligning (T0384)G172 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2b4rO)I209 T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYS 2b4rO 4 :TKLGINGFGRIGRLVFRAAFGRKDIEVVAIND T0384 34 :RKLETA 2b4rO 38 :MDLNHL T0384 43 :ASRY 2b4rO 44 :CYLL T0384 49 :IQLFDQLEVFF 2b4rO 76 :VFAEKDPSQIP T0384 62 :SFDLVYIASPNSLHFAQAKAALSAG 2b4rO 91 :QVDVVCESTGVFLTKELASSHLKGG T0384 87 :KHVILEKPAVSQ 2b4rO 117 :KKVIMSAPPKDD T0384 112 :NNCFIFEAARNYHEKAFTTIKNFLAD 2b4rO 143 :TKQLIVSNASCTTNCLAPLAKVINDR T0384 142 :GADFNYAKYSSKMPDLLAGQTP 2b4rO 170 :GIVEGLMTTVHASTANQLVVDG T0384 164 :NVFSDRFA 2b4rO 200 :RAGRCALS T0384 180 :IYPLYAAVRLFGKAND 2b4rO 214 :TGAAKAVGKVLPELNG T0384 196 :ATYHAQQLDNSIDLNGDGILFYPDYQ 2b4rO 231 :LTGVAFRVPIGTVSVVDLVCRLQKPA T0384 276 :TMTEEVAAFAHMIQQP 2b4rO 257 :KYEEVALEIKKAAEGP Number of specific fragments extracted= 12 number of extra gaps= 1 total=98 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b7gO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1b7gO expands to /projects/compbio/data/pdb/1b7g.pdb.gz 1b7gO:# T0384 read from 1b7gO/merged-good-all-a2m # 1b7gO read from 1b7gO/merged-good-all-a2m # adding 1b7gO to template set # found chain 1b7gO in template set Warning: unaligning (T0384)F63 because of BadResidue code BAD_PEPTIDE in next template residue (1b7gO)D79 Warning: unaligning (T0384)D64 because of BadResidue code BAD_PEPTIDE at template residue (1b7gO)D79 T0384 1 :MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRK 1b7gO 1 :MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTS T0384 37 :ETAATFASR 1b7gO 38 :YEAFIAHRR T0384 47 :Q 1b7gO 47 :G T0384 48 :NIQLFDQL 1b7gO 64 :GIPVAGTV T0384 56 :EVFFK 1b7gO 73 :DLIKT T0384 65 :LVYIASPNSLHFAQAKAALSAGKHVIL 1b7gO 80 :IVVDTTPNGVGAQYKPIYLQLQRNAIF T0384 92 :EKPAVSQ 1b7gO 110 :EKAEVAD T0384 102 :WF 1b7gO 125 :YN T0384 110 :EKNNCFIFEAARNYHEKAFTTIKNFLA 1b7gO 127 :EALGKKYIRVVSCNTTALLRTICTVNK T0384 141 :LG 1b7gO 154 :VS T0384 144 :DFNYAKYS 1b7gO 156 :KVEKVRAT T0384 152 :SKMPDLLAGQTP 1b7gO 167 :RAADQKEVKKGP T0384 164 :NVFSDRFAG 1b7gO 182 :LVPDPATVP T0384 180 :IYPLYAAVRLFGKAN 1b7gO 191 :SHHAKDVNSVIRNLD T0384 196 :ATYHAQQLDNSIDLNGDGILFYPD 1b7gO 206 :IATMAVIAPTTLMHMHFINITLKD T0384 257 :IFTDHQGNQV 1b7gO 248 :LISSKYDAEA T0384 281 :VAAFAHMIQQ 1b7gO 258 :TAELVEVARD T0384 291 :PDLNLY 1b7gO 301 :ESIVVP T0384 299 :WLYDAGSVH 1b7gO 307 :ENIDAIRAS T0384 308 :ELLYTMRQTAG 1b7gO 323 :DSMRITNESLG Number of specific fragments extracted= 20 number of extra gaps= 1 total=118 Number of alignments=7 # 1b7gO read from 1b7gO/merged-good-all-a2m # found chain 1b7gO in template set Warning: unaligning (T0384)F63 because of BadResidue code BAD_PEPTIDE in next template residue (1b7gO)D79 Warning: unaligning (T0384)D64 because of BadResidue code BAD_PEPTIDE at template residue (1b7gO)D79 T0384 1 :MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKL 1b7gO 1 :MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSP T0384 37 :ETAATFASR 1b7gO 38 :YEAFIAHRR T0384 47 :QNI 1b7gO 47 :GIR T0384 50 :QLFDQLEVFFK 1b7gO 66 :PVAGTVEDLIK T0384 62 :S 1b7gO 77 :T T0384 65 :LVYIASPNSLHFAQAKAALSAGKHVILE 1b7gO 80 :IVVDTTPNGVGAQYKPIYLQLQRNAIFQ T0384 95 :AVSQPQEW 1b7gO 108 :GGEKAEVA T0384 105 :LIQTAEKNNCFIFEAARNYHEKAFTTIKNF 1b7gO 122 :LCNYNEALGKKYIRVVSCNTTALLRTICTV T0384 138 :KQVLGADFNYAKYSSK 1b7gO 152 :NKVSKVEKVRATIVRR T0384 154 :MPDLLAGQTPNVFSDRFAG 1b7gO 172 :KEVKKGPINSLVPDPATVP T0384 180 :IYPLYAAVRLFGKAN 1b7gO 191 :SHHAKDVNSVIRNLD T0384 196 :ATYHAQQLDNSIDLNGDGILFYPDY 1b7gO 206 :IATMAVIAPTTLMHMHFINITLKDK T0384 222 :VHIKAGKNIT 1b7gO 292 :VMLMYAVHQE T0384 275 :HTMTEEVAAFAHMI 1b7gO 302 :SIVVPENIDAIRAS T0384 295 :LYQTWLYD 1b7gO 316 :MKLMSAED T0384 309 :LLYTMRQTAG 1b7gO 324 :SMRITNESLG Number of specific fragments extracted= 16 number of extra gaps= 1 total=134 Number of alignments=8 # 1b7gO read from 1b7gO/merged-good-all-a2m # found chain 1b7gO in template set Warning: unaligning (T0384)F63 because of BadResidue code BAD_PEPTIDE in next template residue (1b7gO)D79 Warning: unaligning (T0384)D64 because of BadResidue code BAD_PEPTIDE at template residue (1b7gO)D79 T0384 1 :MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKL 1b7gO 1 :MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSP T0384 37 :ETAATFASRY 1b7gO 38 :YEAFIAHRRG T0384 47 :QN 1b7gO 64 :GI T0384 50 :QLFDQLEVFF 1b7gO 66 :PVAGTVEDLI T0384 65 :LVYIASPNSLHFAQAKAALSAGKHVILE 1b7gO 80 :IVVDTTPNGVGAQYKPIYLQLQRNAIFQ T0384 108 :TAEK 1b7gO 124 :NYNE T0384 112 :NNCFIFEAARNYHEKAFTTIK 1b7gO 129 :LGKKYIRVVSCNTTALLRTIC T0384 134 :FLAD 1b7gO 150 :TVNK T0384 140 :VLGADFNYAKYSSKMPDLLAGQTP 1b7gO 154 :VSKVEKVRATIVRRAADQKEVKKG T0384 179 :GIYPLYAAVRLFG 1b7gO 190 :PSHHAKDVNSVIR T0384 193 :ANDATYHAQQLDNSIDLNGDGILFYPDY 1b7gO 203 :NLDIATMAVIAPTTLMHMHFINITLKDK T0384 261 :HQ 1b7gO 231 :VE T0384 263 :GNQVQ 1b7gO 253 :YDAEA T0384 281 :VAAFAHMIQQPDL 1b7gO 258 :TAELVEVARDLKR Number of specific fragments extracted= 14 number of extra gaps= 1 total=148 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vm6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vm6A expands to /projects/compbio/data/pdb/1vm6.pdb.gz 1vm6A:# T0384 read from 1vm6A/merged-good-all-a2m # 1vm6A read from 1vm6A/merged-good-all-a2m # adding 1vm6A to template set # found chain 1vm6A in template set Warning: unaligning (T0384)G304 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vm6A)F213 T0384 2 :LKLGVIGT 1vm6A 1 :MKYGIVGY T0384 10 :GAISHHFIEAAHTS 1vm6A 10 :GRMGQEIQKVFSEK T0384 25 :EYQLVAIYSRK 1vm6A 24 :GHELVLKVDVN T0384 48 :NIQ 1vm6A 35 :GVE T0384 59 :FKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEK 1vm6A 38 :ELDSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGT T0384 95 :AVSQPQEWFDLIQ 1vm6A 73 :TALKEEHLQMLRE T0384 109 :AEK 1vm6A 86 :LSK T0384 113 :NCFIFEAAR 1vm6A 89 :EVPVVQAYN T0384 122 :NYHEKAFTTIKNFLA 1vm6A 100 :IGINVLKRFLSELVK T0384 137 :DKQ 1vm6A 117 :EDW T0384 144 :DFNYAKYSSKMPD 1vm6A 120 :DVEIVETHHRFKK T0384 177 :DLGIYPLYAAVRLFG 1vm6A 133 :DAPSGTAILLESALG T0384 192 :KANDA 1vm6A 149 :SVPIH T0384 201 :QQLDNSIDLNGDGILFYPDYQVHIKAGK 1vm6A 154 :SLRVGGVPGDHVVVFGNIGETIEIKHRA T0384 272 :QAPHTMTEEVAAFAHMIQQPDLNLY 1vm6A 182 :ISRTVFAIGALKAAEFLVGKDPGMY T0384 299 :WLYDA 1vm6A 207 :SFEEV Number of specific fragments extracted= 16 number of extra gaps= 1 total=164 Number of alignments=10 # 1vm6A read from 1vm6A/merged-good-all-a2m # found chain 1vm6A in template set Warning: unaligning (T0384)G304 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vm6A)F213 T0384 2 :LKLGVIGT 1vm6A 1 :MKYGIVGY T0384 10 :GAISHHFIEAAHTS 1vm6A 10 :GRMGQEIQKVFSEK T0384 25 :EYQLVAIYSR 1vm6A 24 :GHELVLKVDV T0384 47 :QNIQLFD 1vm6A 34 :NGVEELD T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILEK 1vm6A 41 :SPDVVIDFSSPEALPKTVDLCKKYRAGLVLGT T0384 95 :AVSQPQEWFDLIQTA 1vm6A 73 :TALKEEHLQMLRELS T0384 112 :NNCFIFEA 1vm6A 88 :KEVPVVQA T0384 120 :ARNYHEKAFTTIKNFLADKQVLGADFNYAKYSSKMPDL 1vm6A 98 :FSIGINVLKRFLSELVKVLEDWDVEIVETHHRFKKDAP T0384 180 :IYPLYAAVRLFG 1vm6A 136 :SGTAILLESALG T0384 192 :KAND 1vm6A 149 :SVPI T0384 200 :AQQLDNSIDLNGDGILFYPDYQVHIKAGKNIT 1vm6A 153 :HSLRVGGVPGDHVVVFGNIGETIEIKHRAISR T0384 275 :HTMTEEVAAFAHMIQQPD 1vm6A 185 :TVFAIGALKAAEFLVGKD T0384 295 :LYQTWLYDA 1vm6A 203 :PGMYSFEEV Number of specific fragments extracted= 13 number of extra gaps= 1 total=177 Number of alignments=11 # 1vm6A read from 1vm6A/merged-good-all-a2m # found chain 1vm6A in template set Warning: unaligning (T0384)D302 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vm6A)F213 T0384 2 :LKLGVIGT 1vm6A 1 :MKYGIVGY T0384 10 :GAISHHFIEAAHT 1vm6A 10 :GRMGQEIQKVFSE T0384 24 :GEYQLVAIYSRK 1vm6A 23 :KGHELVLKVDVN T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGKHVILEK 1vm6A 39 :LDSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGT T0384 95 :AVSQPQEWFDLIQT 1vm6A 73 :TALKEEHLQMLREL T0384 112 :NNCFIFEAARNYH 1vm6A 88 :KEVPVVQAYNFSI T0384 125 :EKAFTTIKNFLADKQVLGADFNYAKYSSKMPDL 1vm6A 103 :NVLKRFLSELVKVLEDWDVEIVETHHRFKKDAP T0384 180 :IYPLYAAVRLFGKANDATYHA 1vm6A 136 :SGTAILLESALGKSVPIHSLR T0384 204 :DNSIDLNGDGILFYPDYQVHIKAGKN 1vm6A 157 :VGGVPGDHVVVFGNIGETIEIKHRAI T0384 273 :APHTMTEEVAAFAHMIQQPDLNLYQTWLY 1vm6A 183 :SRTVFAIGALKAAEFLVGKDPGMYSFEEV Number of specific fragments extracted= 10 number of extra gaps= 1 total=187 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gadO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gadO expands to /projects/compbio/data/pdb/1gad.pdb.gz 1gadO:Skipped atom 1733, because occupancy 0.4 <= existing 0.600 in 1gadO Skipped atom 1735, because occupancy 0.400 <= existing 0.600 in 1gadO Skipped atom 1737, because occupancy 0.400 <= existing 0.600 in 1gadO Skipped atom 1739, because occupancy 0.400 <= existing 0.600 in 1gadO Skipped atom 1741, because occupancy 0.400 <= existing 0.600 in 1gadO Skipped atom 1743, because occupancy 0.400 <= existing 0.600 in 1gadO # T0384 read from 1gadO/merged-good-all-a2m # 1gadO read from 1gadO/merged-good-all-a2m # adding 1gadO to template set # found chain 1gadO in template set T0384 1 :MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYS 1gadO 0 :TIKVGINGFGRIGRIVFRAAQKRSDIEIVAIND T0384 34 :RKLETAATFASRYQ 1gadO 34 :LDADYMAYMLKYDS T0384 48 :NIQLFDQL 1gadO 72 :RVTAERDP T0384 56 :EV 1gadO 81 :NL T0384 58 :FFKSSFDLVYIASPNSLHFAQAKAALSAG 1gadO 84 :WDEVGVDVVAEATGLFLTDETARKHITAG T0384 87 :KHVILEKPAVSQ 1gadO 114 :KKVVMTGPSKDN T0384 113 :NC 1gadO 138A:GQ T0384 115 :FIFEAARNY 1gadO 143 :IVSNASCTT T0384 124 :HEKAFTTIKNFL 1gadO 154 :LAPLAKVINDNF T0384 144 :DFNYAKYSSK 1gadO 166 :GIIEGLMTTV T0384 154 :MPDLLAGQ 1gadO 179 :TATQKTVD T0384 162 :TPNVFSDRFAGG 1gadO 191 :KDWRGGRGASQN T0384 186 :AVRLFGKAN 1gadO 214 :VGKVLPELN T0384 195 :DATYHAQQLDNSIDLNGDGILFYPD 1gadO 224 :KLTGMAFRVPTPNVSVVDLTVRLEK T0384 277 :MTEEVAAFAHMIQQP 1gadO 252 :YEQIKAAVKAAAEGE Number of specific fragments extracted= 15 number of extra gaps= 0 total=202 Number of alignments=13 # 1gadO read from 1gadO/merged-good-all-a2m # found chain 1gadO in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYS 1gadO 1 :IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND T0384 34 :RKLE 1gadO 34 :LDAD T0384 41 :TFASRYQNI 1gadO 39 :YMAYMLKYD T0384 50 :QLFDQLEVF 1gadO 74 :TAERDPANL T0384 59 :FKS 1gadO 84 :WDE T0384 62 :SFDLVYIASPNSLHFAQAKAALSAG 1gadO 88 :GVDVVAEATGLFLTDETARKHITAG T0384 87 :KHVILEKPAVSQ 1gadO 114 :KKVVMTGPSKDN T0384 113 :NC 1gadO 138A:GQ T0384 115 :FIFEA 1gadO 143 :IVSNA T0384 122 :NYHEKAFTTIKNFL 1gadO 148 :SCTTNCLAPLAKVI T0384 138 :KQVLGADFNYAKYSSKMPDLLAGQT 1gadO 162 :NDNFGIIEGLMTTVHATTATQKTVD T0384 163 :PNVFSDRFAGGAL 1gadO 192 :DWRGGRGASQNII T0384 176 :MDLG 1gadO 210 :AAKA T0384 186 :AVRLFGKAN 1gadO 214 :VGKVLPELN T0384 195 :DATYHAQQLDNSIDLNGDGILFYPDY 1gadO 224 :KLTGMAFRVPTPNVSVVDLTVRLEKA T0384 275 :HTMTEEVAAFAHMIQQPDLNLY 1gadO 250 :ATYEQIKAAVKAAAEGEMKGVL Number of specific fragments extracted= 16 number of extra gaps= 0 total=218 Number of alignments=14 # 1gadO read from 1gadO/merged-good-all-a2m # found chain 1gadO in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYS 1gadO 1 :IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND T0384 34 :RKLE 1gadO 34 :LDAD T0384 41 :TFASRY 1gadO 39 :YMAYML T0384 49 :IQLFDQLEVFF 1gadO 73 :VTAERDPANLK T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGK 1gadO 86 :EVGVDVVAEATGLFLTDETARKHITAGA T0384 88 :HVILEKPAVSQ 1gadO 115 :KVVMTGPSKDN T0384 113 :NCFIFEAARNYHEKAFTTIKNFLAD 1gadO 138A:GQDIVSNASCTTNCLAPLAKVINDN T0384 142 :GADFNYAKYSSKMPDLLAGQTP 1gadO 166 :GIIEGLMTTVHATTATQKTVDG T0384 164 :NVFSDRFA 1gadO 193 :WRGGRGAS T0384 191 :GKANDATYHAQ 1gadO 201 :QNIIPSSTGAA T0384 204 :DNSIDLNGDGILFYPDYQ 1gadO 233 :PTPNVSVVDLTVRLEKAA T0384 276 :TMTEEVAAFAHMIQQP 1gadO 251 :TYEQIKAAVKAAAEGE Number of specific fragments extracted= 12 number of extra gaps= 0 total=230 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3dapA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 3dapA expands to /projects/compbio/data/pdb/3dap.pdb.gz 3dapA:# T0384 read from 3dapA/merged-good-all-a2m # 3dapA read from 3dapA/merged-good-all-a2m # adding 3dapA to template set # found chain 3dapA in template set Warning: unaligning (T0384)E125 because of BadResidue code BAD_PEPTIDE in next template residue (3dapA)P121 Warning: unaligning (T0384)K126 because of BadResidue code BAD_PEPTIDE at template residue (3dapA)P121 T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLE 3dapA 4 :IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRAT T0384 46 :YQ 3dapA 40 :LD T0384 48 :NIQLFD 3dapA 43 :KTPVFD T0384 54 :QLEVFF 3dapA 51 :DVDKHA T0384 61 :SSFDLVYIASPN 3dapA 57 :DDVDVLFLCMGS T0384 73 :SLHFAQAKAALSA 3dapA 70 :TDIPEQAPKFAQF T0384 88 :HVILE 3dapA 83 :ACTVD T0384 95 :AVSQPQEW 3dapA 88 :TYDNHRDI T0384 103 :FDLIQTAEKNNCFIFEAA 3dapA 100 :QVMNEAATAAGNVALVST T0384 123 :YH 3dapA 118 :GW T0384 127 :AFTTIKNFLAD 3dapA 124 :FSINRVYAAAV T0384 141 :LG 3dapA 135 :LA T0384 144 :DFNYAKYSSKMP 3dapA 137 :EHQQHTFWGPGL T0384 167 :SDR 3dapA 149 :SQG T0384 185 :AAVRLFG 3dapA 152 :HSDALRR T0384 192 :KANDATYHAQQL 3dapA 161 :GVQKAVQYTLPS T0384 204 :DNSIDLNGDGILFYPDY 3dapA 239 :HTGMPHGGHVITTGDTG T0384 221 :QVHIKA 3dapA 257 :FNHTVE T0384 243 :GTLTLNT 3dapA 263 :YILKLDR T0384 298 :TWLYDAGSVHELLYTMRQTAGIRF 3dapA 270 :NPDFTASSQIAFGRAAHRMKQQGQ Number of specific fragments extracted= 20 number of extra gaps= 1 total=250 Number of alignments=16 # 3dapA read from 3dapA/merged-good-all-a2m # found chain 3dapA in template set Warning: unaligning (T0384)R121 because of BadResidue code BAD_PEPTIDE in next template residue (3dapA)P121 Warning: unaligning (T0384)N122 because of BadResidue code BAD_PEPTIDE at template residue (3dapA)P121 T0384 1 :M 3dapA 1 :M T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLE 3dapA 4 :IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRAT T0384 46 :YQNI 3dapA 40 :LDTK T0384 50 :QLFDQLEVFFK 3dapA 47 :FDVADVDKHAD T0384 62 :SFDLVYIASP 3dapA 58 :DVDVLFLCMG T0384 72 :NSLHFAQAKAALSA 3dapA 69 :ATDIPEQAPKFAQF T0384 88 :HVILE 3dapA 83 :ACTVD T0384 95 :AVSQPQEW 3dapA 88 :TYDNHRDI T0384 103 :FDLIQTAEKNNCFIF 3dapA 100 :QVMNEAATAAGNVAL T0384 118 :EAA 3dapA 117 :TGW T0384 123 :YHEKAF 3dapA 122 :GMFSIN T0384 129 :TTIKNFL 3dapA 129 :VYAAAVL T0384 138 :KQ 3dapA 136 :AE T0384 143 :ADFNYAKYSSKMPDLLAG 3dapA 138 :HQQHTFWGPGLSQGHSDA T0384 189 :LFG 3dapA 156 :LRR T0384 192 :KANDATYHAQQLDN 3dapA 161 :GVQKAVQYTLPSED T0384 207 :IDLNGDGILFY 3dapA 242 :MPHGGHVITTG T0384 218 :PDYQ 3dapA 254 :TGGF T0384 222 :VHIKA 3dapA 259 :HTVEY T0384 244 :TLTLN 3dapA 264 :ILKLD T0384 297 :QTWLYDAGSVHELLYTMRQTAGIRF 3dapA 269 :RNPDFTASSQIAFGRAAHRMKQQGQ Number of specific fragments extracted= 21 number of extra gaps= 1 total=271 Number of alignments=17 # 3dapA read from 3dapA/merged-good-all-a2m # found chain 3dapA in template set Warning: unaligning (T0384)Y123 because of BadResidue code BAD_PEPTIDE in next template residue (3dapA)P121 Warning: unaligning (T0384)H124 because of BadResidue code BAD_PEPTIDE at template residue (3dapA)P121 T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLE 3dapA 4 :IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRAT T0384 46 :YQN 3dapA 40 :LDT T0384 49 :IQLFD 3dapA 44 :TPVFD T0384 55 :LEVFF 3dapA 49 :VADVD T0384 60 :KSSFDLVYIASPN 3dapA 56 :ADDVDVLFLCMGS T0384 73 :SLHFAQAKAALSA 3dapA 70 :TDIPEQAPKFAQF T0384 88 :HVILEK 3dapA 83 :ACTVDT T0384 96 :VS 3dapA 89 :YD T0384 99 :PQEWFDLIQTAEKNNCFIFEAARN 3dapA 96 :PRHRQVMNEAATAAGNVALVSTGW T0384 125 :EKAFTTIKNFLAD 3dapA 122 :GMFSINRVYAAAV T0384 140 :VLGADFNYAKYSSKMPDL 3dapA 135 :LAEHQQHTFWGPGLSQGH T0384 184 :YAAVRLFGKANDATYHAQQL 3dapA 153 :SDALRRIPGVQKAVQYTLPS T0384 204 :DNSIDLNGDGILFY 3dapA 239 :HTGMPHGGHVITTG T0384 218 :PDYQVHIKAG 3dapA 254 :TGGFNHTVEY T0384 244 :TLTLNTI 3dapA 264 :ILKLDRN T0384 297 :QTWLYDAGSVHELLYTMRQTAGI 3dapA 271 :PDFTASSQIAFGRAAHRMKQQGQ Number of specific fragments extracted= 16 number of extra gaps= 1 total=287 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bg6/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bg6 expands to /projects/compbio/data/pdb/1bg6.pdb.gz 1bg6:Warning: there is no chain 1bg6 will retry with 1bg6A # T0384 read from 1bg6/merged-good-all-a2m # 1bg6 read from 1bg6/merged-good-all-a2m # adding 1bg6 to template set # found chain 1bg6 in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTS 1bg6 5 :KTYAVLGLGNGGHAFAAYLALK T0384 25 :EYQLV 1bg6 27 :GQSVL T0384 31 :IYSRKLETAATFASR 1bg6 32 :AWDIDAQRIKEIQDR T0384 47 :Q 1bg6 47 :G T0384 48 :NI 1bg6 61 :HP T0384 50 :QLFDQL 1bg6 64 :LLTSDI T0384 56 :EVF 1bg6 71 :LAV T0384 61 :SSFDLVYIASPNSLHFAQAKAA 1bg6 74 :KDADVILIVVPAIHHASIAANI T0384 85 :AGKHVILE 1bg6 101 :EGQLIILN T0384 94 :PAVSQP 1bg6 109 :PGATGG T0384 102 :WFDLIQTAEKNN 1bg6 115 :ALEFRKILRENG T0384 114 :CFIFEAARNY 1bg6 130 :VTIGETSSML T0384 138 :KQ 1bg6 145 :ER T0384 141 :LG 1bg6 147 :PG T0384 143 :ADFNYA 1bg6 150 :VTVNAI T0384 154 :MPDL 1bg6 156 :KGAM Number of specific fragments extracted= 16 number of extra gaps= 0 total=303 Number of alignments=19 # 1bg6 read from 1bg6/merged-good-all-a2m # found chain 1bg6 in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTS 1bg6 5 :KTYAVLGLGNGGHAFAAYLALK T0384 25 :EYQLV 1bg6 27 :GQSVL T0384 31 :IYSRKLETAATFASR 1bg6 32 :AWDIDAQRIKEIQDR T0384 47 :QNI 1bg6 47 :GAI T0384 50 :QLFDQLEVFFK 1bg6 64 :LLTSDIGLAVK T0384 62 :SFDLVYIASPNSLHFAQAKAA 1bg6 75 :DADVILIVVPAIHHASIAANI T0384 85 :AGKHVILEKPAVS 1bg6 101 :EGQLIILNPGATG T0384 102 :WFDLIQTAEKNNC 1bg6 115 :ALEFRKILRENGA T0384 115 :FIFEAARNYH 1bg6 131 :TIGETSSMLF T0384 142 :G 1bg6 145 :E T0384 143 :ADFNYAKYSSK 1bg6 147 :PGQVTVNAIKG T0384 154 :MPDLLAG 1bg6 276 :GNPAYRG T0384 164 :NVFSDRFAGGAL 1bg6 283 :IAGPINLNTRYF T0384 176 :MDLGIYPLYAAVRLFG 1bg6 298 :VSTGLVPLSELGRAVN T0384 192 :KA 1bg6 315 :PT T0384 275 :HTMTEEVAAFAHMI 1bg6 317 :PLIDAVLDLISSLI T0384 318 :GI 1bg6 331 :DT Number of specific fragments extracted= 17 number of extra gaps= 0 total=320 Number of alignments=20 # 1bg6 read from 1bg6/merged-good-all-a2m # found chain 1bg6 in template set T0384 2 :LKLGVIGTGAISHHFIEAAHT 1bg6 5 :KTYAVLGLGNGGHAFAAYLAL T0384 24 :GEYQLVA 1bg6 26 :KGQSVLA T0384 32 :YSRKLETAATFASRY 1bg6 33 :WDIDAQRIKEIQDRG T0384 49 :IQLFDQLEVFF 1bg6 63 :DLLTSDIGLAV T0384 62 :SFDLVYIASPNSLHFAQAKAA 1bg6 75 :DADVILIVVPAIHHASIAANI T0384 169 :RFAGGALMDLGIYPLYAAVRLF 1bg6 100 :SEGQLIILNPGATGGALEFRKI T0384 191 :GKANDATYHAQ 1bg6 125 :NGAPEVTIGET T0384 234 :LPCEIYTTD 1bg6 138 :MLFTCRSER T0384 243 :GTLTLNTIEHIRSAIFTDHQ 1bg6 148 :GQVTVNAIKGAMDFACLPAA T0384 263 :GNQVQLPIQQAPHTMTEEVAAFAHMIQQPDLNLYQTWL 1bg6 220 :QYYLEGITPSVGSLAEKVDAERIAIAKAFDLNVPSVCE Number of specific fragments extracted= 10 number of extra gaps= 0 total=330 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1drw/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1drw expands to /projects/compbio/data/pdb/1drw.pdb.gz 1drw:Warning: there is no chain 1drw will retry with 1drwA # T0384 read from 1drw/merged-good-all-a2m # 1drw read from 1drw/merged-good-all-a2m # adding 1drw to template set # found chain 1drw in template set Warning: unaligning (T0384)I7 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1drw)G12 Warning: unaligning (T0384)G8 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1drw)G12 Warning: unaligning (T0384)Y67 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)D78 Warning: unaligning (T0384)I68 because of BadResidue code BAD_PEPTIDE at template residue (1drw)D78 Warning: unaligning (T0384)A69 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)T80 Warning: unaligning (T0384)S70 because of BadResidue code BAD_PEPTIDE at template residue (1drw)T80 Warning: unaligning (T0384)A143 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)D152 Warning: unaligning (T0384)Y147 because of BadResidue code BAD_PEPTIDE at template residue (1drw)D152 Warning: unaligning (T0384)L158 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1drw)V164 Warning: unaligning (T0384)A159 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1drw)V164 Warning: unaligning (T0384)Y220 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1drw)R230 Warning: unaligning (T0384)I253 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1drw)R230 Warning: unaligning (T0384)L293 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)E258 Warning: unaligning (T0384)N294 because of BadResidue code BAD_PEPTIDE at template residue (1drw)E258 Warning: unaligning (T0384)Y296 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1drw)L261 Warning: unaligning (T0384)Q297 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1drw)L261 T0384 2 :LKLGV 1drw 6 :IRVAI T0384 9 :T 1drw 13 :A T0384 10 :GAISHHFIEAAHTSGEYQLVAIYSRK 1drw 15 :GRMGRQLIQAALALEGVQLGAALERE T0384 47 :Q 1drw 41 :G T0384 48 :NIQLFDQLEVFF 1drw 59 :GVTVQSSLDAVK T0384 61 :SSFDLV 1drw 71 :DDFDVF T0384 71 :PNSLHFAQAKAALSAGKHVILEK 1drw 81 :RPEGTLNHLAFCRQHGKGMVIGT T0384 95 :AVSQPQ 1drw 104 :TGFDEA T0384 102 :WFDLIQTAEK 1drw 110 :GKQAIRDAAA T0384 113 :NCFIFEA 1drw 120 :DIAIVFA T0384 120 :ARNYHEKAFTTIKNFLAD 1drw 129 :FSVGVNVMLKLLEKAAKV T0384 140 :VLG 1drw 147 :MGD T0384 148 :AKYSSKMPDL 1drw 153 :IEIIEAHHRH T0384 160 :GQT 1drw 165 :DAP T0384 181 :YPLYAAVRLFG 1drw 173 :AMGEAIAHALD T0384 192 :K 1drw 185 :D T0384 200 :AQQLDN 1drw 191 :VYSREG T0384 206 :SIDLNGDGILFYPD 1drw 215 :DIVGEHTAMFADIG T0384 254 :RSAIFTDHQG 1drw 231 :LEITHKASSR T0384 278 :TEEVAAFAHMIQQ 1drw 241 :MTFANGAVRSALW T0384 291 :PD 1drw 255 :SG T0384 295 :L 1drw 259 :S T0384 298 :TWLYDAG 1drw 262 :FDMRDVL Number of specific fragments extracted= 23 number of extra gaps= 7 total=353 Number of alignments=22 # 1drw read from 1drw/merged-good-all-a2m # found chain 1drw in template set Warning: unaligning (T0384)I7 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1drw)G12 Warning: unaligning (T0384)G8 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1drw)G12 Warning: unaligning (T0384)Y67 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)D78 Warning: unaligning (T0384)I68 because of BadResidue code BAD_PEPTIDE at template residue (1drw)D78 Warning: unaligning (T0384)A69 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)T80 Warning: unaligning (T0384)S70 because of BadResidue code BAD_PEPTIDE at template residue (1drw)T80 Warning: unaligning (T0384)L141 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)D152 Warning: unaligning (T0384)G142 because of BadResidue code BAD_PEPTIDE at template residue (1drw)D152 Warning: unaligning (T0384)K153 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1drw)V164 Warning: unaligning (T0384)M154 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1drw)V164 Warning: unaligning (T0384)Q262 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1drw)R230 Warning: unaligning (T0384)G263 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1drw)R230 Warning: unaligning (T0384)L293 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)E258 Warning: unaligning (T0384)N294 because of BadResidue code BAD_PEPTIDE at template residue (1drw)E258 Warning: unaligning (T0384)Y296 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1drw)L261 Warning: unaligning (T0384)Q297 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1drw)L261 T0384 2 :LKLGV 1drw 6 :IRVAI T0384 9 :T 1drw 13 :A T0384 10 :GAISHHFIEAAHTSGEYQLVAIYSRK 1drw 15 :GRMGRQLIQAALALEGVQLGAALERE T0384 47 :QNI 1drw 41 :GSS T0384 50 :QLFDQLEVFFK 1drw 61 :TVQSSLDAVKD T0384 62 :SFDLV 1drw 72 :DFDVF T0384 71 :PNSLHFAQAKAALSAGKHVILEK 1drw 81 :RPEGTLNHLAFCRQHGKGMVIGT T0384 95 :AVSQPQEWFDLIQTAE 1drw 104 :TGFDEAGKQAIRDAAA T0384 113 :NCFIFEA 1drw 120 :DIAIVFA T0384 120 :ARNYHEKAFTTIKNFL 1drw 129 :FSVGVNVMLKLLEKAA T0384 136 :ADKQV 1drw 146 :VMGDY T0384 143 :ADFNYAKYSS 1drw 153 :IEIIEAHHRH T0384 155 :PDLL 1drw 165 :DAPS T0384 173 :GALMDLG 1drw 169 :GTALAMG T0384 184 :YAAVRLFG 1drw 176 :EAIAHALD T0384 192 :K 1drw 185 :D T0384 207 :IDLNGDGILF 1drw 216 :IVGEHTAMFA T0384 259 :TDH 1drw 226 :DIG T0384 264 :NQVQLPIQQAPHTMTEEVAAFA 1drw 231 :LEITHKASSRMTFANGAVRSAL T0384 287 :MIQ 1drw 253 :WLS T0384 292 :D 1drw 256 :G T0384 295 :L 1drw 259 :S T0384 298 :TWLYDAG 1drw 262 :FDMRDVL Number of specific fragments extracted= 23 number of extra gaps= 7 total=376 Number of alignments=23 # 1drw read from 1drw/merged-good-all-a2m # found chain 1drw in template set Warning: unaligning (T0384)I7 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1drw)G12 Warning: unaligning (T0384)G8 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1drw)G12 Warning: unaligning (T0384)Y67 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)D78 Warning: unaligning (T0384)I68 because of BadResidue code BAD_PEPTIDE at template residue (1drw)D78 Warning: unaligning (T0384)A69 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)T80 Warning: unaligning (T0384)S70 because of BadResidue code BAD_PEPTIDE at template residue (1drw)T80 Warning: unaligning (T0384)L141 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)D152 Warning: unaligning (T0384)G142 because of BadResidue code BAD_PEPTIDE at template residue (1drw)D152 Warning: unaligning (T0384)M154 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1drw)V164 Warning: unaligning (T0384)P155 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1drw)V164 Warning: unaligning (T0384)Q221 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1drw)R230 Warning: unaligning (T0384)V222 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1drw)R230 Warning: unaligning (T0384)D292 because of BadResidue code BAD_PEPTIDE in next template residue (1drw)E258 Warning: unaligning (T0384)L293 because of BadResidue code BAD_PEPTIDE at template residue (1drw)E258 Warning: unaligning (T0384)L295 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1drw)L261 T0384 2 :LKLGV 1drw 6 :IRVAI T0384 9 :T 1drw 13 :A T0384 10 :GAISHHFIEAAHTSGEYQLVAIYSRKL 1drw 15 :GRMGRQLIQAALALEGVQLGAALEREG T0384 49 :IQLFDQLEVFF 1drw 60 :VTVQSSLDAVK T0384 62 :SFDLV 1drw 72 :DFDVF T0384 71 :PNSLHFAQAKAALSAGKHVILEK 1drw 81 :RPEGTLNHLAFCRQHGKGMVIGT T0384 95 :AVSQPQEWFDLIQT 1drw 104 :TGFDEAGKQAIRDA T0384 112 :NNCFIFEAARNYH 1drw 119 :ADIAIVFAANFSV T0384 125 :EKAFTTIKNFLAD 1drw 134 :NVMLKLLEKAAKV T0384 139 :QV 1drw 149 :DY T0384 143 :ADFNY 1drw 153 :IEIIE T0384 149 :KYSSK 1drw 158 :AHHRH T0384 156 :DLLAGQ 1drw 165 :DAPSGT T0384 179 :GIYPLYAAVRLFGKANDATYHAQQL 1drw 171 :ALAMGEAIAHALDKDLKDCAVYSRE T0384 204 :DNSIDLNGDGILFYP 1drw 213 :AGDIVGEHTAMFADI T0384 220 :Y 1drw 228 :G T0384 223 :HIKAGKNIT 1drw 231 :LEITHKASS T0384 278 :TEEVAAFAHMIQ 1drw 241 :MTFANGAVRSAL T0384 290 :QP 1drw 255 :SG T0384 294 :N 1drw 259 :S T0384 296 :YQTWLYD 1drw 262 :FDMRDVL Number of specific fragments extracted= 21 number of extra gaps= 7 total=397 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1obfO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0384 read from 1obfO/merged-good-all-a2m # 1obfO read from 1obfO/merged-good-all-a2m # found chain 1obfO in training set Warning: unaligning (T0384)R121 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1obfO)T155 Warning: unaligning (T0384)Y123 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1obfO)T155 Warning: unaligning (T0384)Y150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)T178 Warning: unaligning (T0384)S151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)T178 Warning: unaligning (T0384)K153 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)H181 Warning: unaligning (T0384)G173 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)M207 Warning: unaligning (T0384)A174 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)M207 T0384 1 :MLKLGVIGTGAISHHFIEAAHTSG 1obfO 1 :TIRVAINGYGRIGRNILRAHYEGG T0384 25 :EYQLVAIYS 1obfO 28 :DIEIVAIND T0384 34 :RKLE 1obfO 38 :GDPK T0384 41 :TFASRYQ 1obfO 42 :TNAHLTR T0384 48 :NIQLFDQL 1obfO 75 :RVDANRNP T0384 56 :EV 1obfO 84 :QL T0384 58 :FFKSSFDLVYIASPNSLHFAQAKAALSAG 1obfO 87 :WGALKVDVVLECTGFFTTKEKAGAHIKGG T0384 87 :KHVILEKP 1obfO 117 :KKVIISAP T0384 95 :AVSQPQ 1obfO 135 :YGVNHG T0384 112 :NNCFIFEAA 1obfO 144 :STDTVISNA T0384 124 :HEKAFTTIKNF 1obfO 159 :LAPLVKPLNDK T0384 141 :LG 1obfO 170 :LG T0384 145 :FNYAK 1obfO 172 :LQDGL T0384 152 :S 1obfO 179 :T T0384 154 :MPDLLAGQTPNVFSDRFAG 1obfO 187 :QVLTDVYHEDLRRARSATM T0384 175 :LMD 1obfO 208 :IPT T0384 180 :IYPLYAAVRLFGKAN 1obfO 212 :TGAAAAVGDVLPELD T0384 195 :DATYHAQQLDNSIDLNGDGILFYPD 1obfO 228 :KLNGYAIRVPTINVSIVDLSFVAKR T0384 234 :LPCEI 1obfO 292 :ASSTV T0384 239 :YTTDGTLTLNTI 1obfO 302 :KVSGRLVKVSSW T0384 299 :WLYDAGSVHELLYTMRQ 1obfO 317 :EWGFSNRMLDTTVALMS Number of specific fragments extracted= 21 number of extra gaps= 3 total=418 Number of alignments=25 # 1obfO read from 1obfO/merged-good-all-a2m # found chain 1obfO in training set Warning: unaligning (T0384)R121 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1obfO)T155 Warning: unaligning (T0384)A148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)T178 Warning: unaligning (T0384)K149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)T178 Warning: unaligning (T0384)S151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)H181 Warning: unaligning (T0384)S152 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)H181 Warning: unaligning (T0384)G173 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)M207 Warning: unaligning (T0384)A174 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)M207 T0384 2 :LKLGVIGTGAISHHFIEAAHTSG 1obfO 2 :IRVAINGYGRIGRNILRAHYEGG T0384 25 :EYQLVAIYS 1obfO 28 :DIEIVAIND T0384 34 :RKLE 1obfO 38 :GDPK T0384 41 :TFASRYQNI 1obfO 42 :TNAHLTRYD T0384 50 :QLFDQLEVF 1obfO 77 :DANRNPAQL T0384 59 :FKS 1obfO 87 :WGA T0384 62 :SFDLVYIASPNSLHFAQAKAALSAG 1obfO 91 :KVDVVLECTGFFTTKEKAGAHIKGG T0384 87 :KHVILEKPAV 1obfO 117 :KKVIISAPGG T0384 97 :SQ 1obfO 142 :LK T0384 112 :NNCFIFEAA 1obfO 144 :STDTVISNA T0384 123 :YHEKAFTTIKNFL 1obfO 158 :CLAPLVKPLNDKL T0384 142 :GADFNY 1obfO 171 :GLQDGL T0384 150 :Y 1obfO 179 :T T0384 153 :K 1obfO 182 :A T0384 155 :PDLLA 1obfO 188 :VLTDV T0384 163 :PNVFSDRFAG 1obfO 196 :DLRRARSATM T0384 175 :L 1obfO 208 :I T0384 180 :IYPLYAAVRLFGKAN 1obfO 212 :TGAAAAVGDVLPELD T0384 195 :DATYHAQQLDNSIDLNGDGILFYPDY 1obfO 228 :KLNGYAIRVPTINVSIVDLSFVAKRN T0384 240 :TTDGTLTLN 1obfO 303 :VSGRLVKVS T0384 298 :TWLYDAGSVHELLYTMR 1obfO 316 :NEWGFSNRMLDTTVALM Number of specific fragments extracted= 21 number of extra gaps= 3 total=439 Number of alignments=26 # 1obfO read from 1obfO/merged-good-all-a2m # found chain 1obfO in training set Warning: unaligning (T0384)R121 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1obfO)T155 Warning: unaligning (T0384)Y123 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1obfO)T155 Warning: unaligning (T0384)A148 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)T178 Warning: unaligning (T0384)K149 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)T178 Warning: unaligning (T0384)S151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1obfO)H181 Warning: unaligning (T0384)S152 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1obfO)H181 T0384 2 :LKLGVIGTGAISHHFIEAAHTSG 1obfO 2 :IRVAINGYGRIGRNILRAHYEGG T0384 25 :EYQLVAIYS 1obfO 28 :DIEIVAIND T0384 34 :RKLE 1obfO 38 :GDPK T0384 41 :TFASRY 1obfO 42 :TNAHLT T0384 49 :IQLFDQLEVFF 1obfO 76 :VDANRNPAQLP T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGK 1obfO 89 :ALKVDVVLECTGFFTTKEKAGAHIKGGA T0384 88 :HVILEKPAV 1obfO 118 :KVIISAPGG T0384 112 :NNCFIFEAA 1obfO 144 :STDTVISNA T0384 124 :HEKAFTTIKNFLAD 1obfO 156 :TNCLAPLVKPLNDK T0384 140 :V 1obfO 170 :L T0384 142 :GADFNY 1obfO 171 :GLQDGL T0384 150 :Y 1obfO 179 :T T0384 153 :KMPDLLAGQTPNVFSDRFAG 1obfO 182 :AYTNNQVLTDVYHEDLRRAR T0384 180 :IYPLYAAVRLF 1obfO 212 :TGAAAAVGDVL T0384 191 :GKANDATYHAQ 1obfO 226 :DGKLNGYAIRV T0384 204 :DNSIDLNGDGILFYPD 1obfO 237 :PTINVSIVDLSFVAKR T0384 271 :QQAPHTMTEEVA 1obfO 253 :NTTVEEVNGILK T0384 286 :HMIQQP 1obfO 265 :AASEGE Number of specific fragments extracted= 18 number of extra gaps= 2 total=457 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nptO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nptO expands to /projects/compbio/data/pdb/1npt.pdb.gz 1nptO:# T0384 read from 1nptO/merged-good-all-a2m # 1nptO read from 1nptO/merged-good-all-a2m # adding 1nptO to template set # found chain 1nptO in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRK 1nptO 1 :VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLT T0384 39 :AATFASRYQ 1nptO 37 :ANTLAHLLK T0384 48 :NIQLFDQL 1nptO 72 :IVKAERDP T0384 56 :EV 1nptO 81 :NL T0384 58 :FFKSSFDLVYIASPNSLHFAQAKAALSAG 1nptO 84 :WGEIGVDIVVESTGRFTKREDAAKHLEAG T0384 87 :KHVILEKPAVSQ 1nptO 114 :KKVIISAPAKNE T0384 111 :KNNCFIFEAARNY 1nptO 138A:PKAHHVISNASAT T0384 124 :HEKAFTTIKNFL 1nptO 154 :LAPFAKVLHEQF T0384 144 :DFNYAKYS 1nptO 166 :GIVRGMMT T0384 152 :SKMPDLLAGQTPNVFSDRFAGGALMDL 1nptO 180 :NDQRILDLPHKDLRRARAAAESIIPTT T0384 180 :IYPLYAAVRLFGKAN 1nptO 208 :TGAAKAVALVLPELK T0384 195 :DATYHAQQLDNSIDLNGDGILFYPD 1nptO 224 :KLNGMAMRVPTPNVSVVDLVAELEK T0384 278 :TEEVAAFAHMIQQ 1nptO 253 :EEVNAALKAAAEG T0384 299 :WLYDAGSVHELLYTMRQT 1nptO 314 :ETGYSHRVVDLAAYIASK Number of specific fragments extracted= 14 number of extra gaps= 0 total=471 Number of alignments=28 # 1nptO read from 1nptO/merged-good-all-a2m # found chain 1nptO in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYS 1nptO 1 :VKVGINGFGRIGRNVFRAALKNPDIEVVAVND T0384 34 :RK 1nptO 34 :TD T0384 39 :AATFASRYQNI 1nptO 37 :ANTLAHLLKYD T0384 50 :QLFDQLEVF 1nptO 74 :KAERDPENL T0384 59 :FKS 1nptO 84 :WGE T0384 62 :SFDLVYIASPNSLHFAQAKAALSAG 1nptO 88 :GVDIVVESTGRFTKREDAAKHLEAG T0384 87 :KHVILEKPAV 1nptO 114 :KKVIISAPAK T0384 97 :SQPQ 1nptO 137 :YDPK T0384 113 :NCFIFEAARN 1nptO 140 :AHHVISNASA T0384 123 :YHEKAFTTIKNFL 1nptO 153 :CLAPFAKVLHEQF T0384 142 :GADFNYAKYSSKMPDLLAGQT 1nptO 166 :GIVRGMMTTVHSYTNDQRILD T0384 163 :PNVFSDRFAGGAL 1nptO 192 :DLRRARAAAESII T0384 180 :IYPLYAAVRLFGKAN 1nptO 208 :TGAAKAVALVLPELK T0384 195 :DATYHAQQLDNSIDLNGDGILFYPDY 1nptO 224 :KLNGMAMRVPTPNVSVVDLVAELEKE T0384 275 :HTMTEEVAAFAHMIQQPDLN 1nptO 250 :VTVEEVNAALKAAAEGELKG T0384 295 :LYQ 1nptO 276 :EPL T0384 298 :TWLYDAGSVHELLYTMRQ 1nptO 313 :NETGYSHRVVDLAAYIAS Number of specific fragments extracted= 17 number of extra gaps= 0 total=488 Number of alignments=29 # 1nptO read from 1nptO/merged-good-all-a2m # found chain 1nptO in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKL 1nptO 1 :VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTD T0384 39 :AATFASRY 1nptO 37 :ANTLAHLL T0384 49 :IQLFDQLEVFF 1nptO 73 :VKAERDPENLA T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAG 1nptO 86 :EIGVDIVVESTGRFTKREDAAKHLEAG T0384 87 :KHVILEKPAVSQ 1nptO 114 :KKVIISAPAKNE T0384 112 :NNCFIFEAARNYH 1nptO 139 :KAHHVISNASATT T0384 125 :EKAFTTIKNFL 1nptO 155 :APFAKVLHEQF T0384 142 :GADFNYAKYSSKMPDLLAGQTPNVFSDRFAG 1nptO 166 :GIVRGMMTTVHSYTNDQRILDLPHKDLRRAR T0384 180 :IYPLYAAVRLFGKAND 1nptO 208 :TGAAKAVALVLPELKG T0384 196 :ATYHAQQLDNSIDLNGDGILFYPDYQ 1nptO 225 :LNGMAMRVPTPNVSVVDLVAELEKEV T0384 276 :TMTEEVAAFAHMIQQP 1nptO 251 :TVEEVNAALKAAAEGE Number of specific fragments extracted= 11 number of extra gaps= 0 total=499 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1arzC/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1arzC expands to /projects/compbio/data/pdb/1arz.pdb.gz 1arzC:# T0384 read from 1arzC/merged-good-all-a2m # 1arzC read from 1arzC/merged-good-all-a2m # adding 1arzC to template set # found chain 1arzC in template set T0384 2 :LKLGVIGT 1arzC 6 :IRVAIAGA T0384 10 :GAISHHFIEAAHTSGEYQLVAIYSRK 1arzC 15 :GRMGRQLIQAALALEGVQLGAALERE T0384 42 :FASRYQ 1arzC 49 :AGELAG T0384 48 :NIQLFDQLEVFF 1arzC 59 :GVTVQSSLDAVK T0384 61 :SSFDLVYIASPNSLHFAQAKAALSAGKHVILEK 1arzC 71 :DDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGT T0384 95 :AVSQPQEWFDLIQT 1arzC 104 :TGFDEAGKQAIRDA T0384 112 :NNCFIFEA 1arzC 119 :ADIAIVFA T0384 120 :ARNYHEKAFTTIKNFLAD 1arzC 129 :FSVGVNVMLKLLEKAAKV T0384 138 :K 1arzC 149 :D T0384 143 :ADFNYAKYSSKMPDL 1arzC 151 :TDIEIIEAHHRHKVD T0384 174 :ALMDLGIYPLYAAVRLFG 1arzC 166 :APSGTALAMGEAIAHALD T0384 192 :K 1arzC 185 :D T0384 200 :AQQLDN 1arzC 191 :VYSREG T0384 206 :SIDLNGDGILFYPDYQVHIKA 1arzC 215 :DIVGEHTAMFADIGERLEITH T0384 259 :TDH 1arzC 236 :KAS T0384 276 :TMTEEVAAFAHMIQQ 1arzC 239 :SRMTFANGAVRSALW T0384 291 :PDLNLYQTWLYDAG 1arzC 255 :SGKESGLFDMRDVL Number of specific fragments extracted= 17 number of extra gaps= 0 total=516 Number of alignments=31 # 1arzC read from 1arzC/merged-good-all-a2m # found chain 1arzC in template set T0384 2 :LKLGVIGT 1arzC 6 :IRVAIAGA T0384 10 :GAISHHFIEAAHTSGEYQLVAIYSR 1arzC 15 :GRMGRQLIQAALALEGVQLGAALER T0384 41 :TFASRYQNI 1arzC 48 :DAGELAGAG T0384 50 :QLFDQLEVFFK 1arzC 61 :TVQSSLDAVKD T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILEK 1arzC 72 :DFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGT T0384 95 :AVSQPQEWFDLIQTA 1arzC 104 :TGFDEAGKQAIRDAA T0384 112 :NNCFIFEA 1arzC 119 :ADIAIVFA T0384 120 :ARNYHEKAFTTIKNFL 1arzC 129 :FSVGVNVMLKLLEKAA T0384 136 :ADKQVLGADFNYAKYSSKMPDLL 1arzC 146 :VMGDYTDIEIIEAHHRHKVDAPS T0384 173 :GALMDLG 1arzC 169 :GTALAMG T0384 184 :YAAVRLFG 1arzC 176 :EAIAHALD T0384 192 :K 1arzC 185 :D T0384 207 :IDLNGDGILFYPDYQVHIKAGK 1arzC 216 :IVGEHTAMFADIGERLEITHKA T0384 275 :HTMTEEVAAFAHMIQQ 1arzC 238 :SSRMTFANGAVRSALW T0384 291 :PDLNLYQTWLYDAG 1arzC 255 :SGKESGLFDMRDVL Number of specific fragments extracted= 15 number of extra gaps= 0 total=531 Number of alignments=32 # 1arzC read from 1arzC/merged-good-all-a2m # found chain 1arzC in template set T0384 2 :LKLGVIGT 1arzC 6 :IRVAIAGA T0384 10 :GAISHHFIEAAHTSGEYQLVAIYSRK 1arzC 15 :GRMGRQLIQAALALEGVQLGAALERE T0384 41 :TFASRYQN 1arzC 48 :DAGELAGA T0384 49 :IQLFDQLEVF 1arzC 60 :VTVQSSLDAV T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGKHVILEK 1arzC 70 :KDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGT T0384 95 :AVSQPQEWFDLIQT 1arzC 104 :TGFDEAGKQAIRDA T0384 112 :NNCFIFEAARNY 1arzC 119 :ADIAIVFAANFS T0384 124 :HEKAFTTIKNFLAD 1arzC 133 :VNVMLKLLEKAAKV T0384 138 :KQV 1arzC 149 :DYT T0384 145 :FNYAKYSSKMPDL 1arzC 152 :DIEIIEAHHRHKV T0384 173 :GALMDLGIYPLYAAVRLFGKANDATYHAQQL 1arzC 165 :DAPSGTALAMGEAIAHALDKDLKDCAVYSRE T0384 204 :DNSIDLNGDGILFYPDYQVHIKAG 1arzC 213 :AGDIVGEHTAMFADIGERLEITHK T0384 229 :NIT 1arzC 237 :ASS T0384 276 :TMTEEVAAFAHMIQQPDLNLYQTWLYD 1arzC 242 :TFANGAVRSALWLSGKESGLFDMRDVL Number of specific fragments extracted= 14 number of extra gaps= 0 total=545 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gd1O/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gd1O expands to /projects/compbio/data/pdb/1gd1.pdb.gz 1gd1O:# T0384 read from 1gd1O/merged-good-all-a2m # 1gd1O read from 1gd1O/merged-good-all-a2m # adding 1gd1O to template set # found chain 1gd1O in template set Warning: unaligning (T0384)G24 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)D24 Warning: unaligning (T0384)E25 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)D24 Warning: unaligning (T0384)L51 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)E76 Warning: unaligning (T0384)F52 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)E76 Warning: unaligning (T0384)F166 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)L218 Warning: unaligning (T0384)S167 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)L218 T0384 2 :LKLGVIGTGAISHHFIEAAHTS 1gd1O 1 :VKVGINGFGRIGRNVFRAALKN T0384 26 :YQLVAIYSRK 1gd1O 25 :IEVVAVNDLT T0384 39 :AATFASRYQ 1gd1O 37 :ANTLAHLLK T0384 48 :NIQ 1gd1O 72 :IVK T0384 53 :DQLEV 1gd1O 77 :RDPEN T0384 58 :FFKSSFDLVYIASPNSLHFAQAKAALSAG 1gd1O 84 :WGEIGVDIVVESTGRFTKREDAAKHLEAG T0384 87 :KHVILEKPAVSQ 1gd1O 114 :KKVIISAPAKNE T0384 111 :KNNCFIFEAARNY 1gd1O 138A:PKAHHVISNASCT T0384 124 :HEKAFTTIKNFL 1gd1O 154 :LAPFAKVLHEQF T0384 144 :DFNYAKYS 1gd1O 166 :GIVRGMMT T0384 153 :KMPDLLAGQT 1gd1O 178 :YTNDQRILDL T0384 163 :PNV 1gd1O 214 :VAL T0384 168 :DRFAG 1gd1O 219 :PELKG T0384 195 :DATYHAQQLDNSIDLNGDGILFYPD 1gd1O 224 :KLNGMAMRVPTPNVSVVDLVAELEK T0384 277 :MTEEVAAFAHMIQQ 1gd1O 252 :VEEVNAALKAAAEG T0384 299 :WLYDAGSVHELLYTMRQ 1gd1O 314 :ETGYSHRVVDLAAYIAS Number of specific fragments extracted= 16 number of extra gaps= 3 total=561 Number of alignments=34 # 1gd1O read from 1gd1O/merged-good-all-a2m # found chain 1gd1O in template set Warning: unaligning (T0384)G24 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)D24 Warning: unaligning (T0384)E25 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)D24 Warning: unaligning (T0384)L51 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)E76 Warning: unaligning (T0384)F52 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)E76 Warning: unaligning (T0384)M154 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)L218 T0384 2 :LKLGVIGTGAISHHFIEAAHTS 1gd1O 1 :VKVGINGFGRIGRNVFRAALKN T0384 26 :YQLVAIYS 1gd1O 25 :IEVVAVND T0384 34 :RKLE 1gd1O 34 :TDAN T0384 41 :TFASRYQNI 1gd1O 39 :TLAHLLKYD T0384 50 :Q 1gd1O 74 :K T0384 53 :DQLEVF 1gd1O 77 :RDPENL T0384 59 :FKS 1gd1O 84 :WGE T0384 62 :SFDLVYIASPNSLHFAQAKAALSAG 1gd1O 88 :GVDIVVESTGRFTKREDAAKHLEAG T0384 87 :KHVILEKPAV 1gd1O 114 :KKVIISAPAK T0384 97 :SQP 1gd1O 137 :YDP T0384 112 :NNCFIFEAARN 1gd1O 139 :KAHHVISNASC T0384 123 :YHEKAFTTIKNFL 1gd1O 153 :CLAPFAKVLHEQF T0384 142 :GADFNYAKYSSK 1gd1O 166 :GIVRGMMTTVHS T0384 155 :PDLLAG 1gd1O 219 :PELKGK T0384 196 :ATYHAQQLDNSIDLNGDGILFYPDY 1gd1O 225 :LNGMAMRVPTPNVSVVDLVAELEKE T0384 275 :HTMTEEVAAFAHMIQQPDLN 1gd1O 250 :VTVEEVNAALKAAAEGELKG T0384 295 :LYQ 1gd1O 276 :EPL T0384 298 :TWLYDAGSVHELLYTMR 1gd1O 313 :NETGYSHRVVDLAAYIA Number of specific fragments extracted= 18 number of extra gaps= 3 total=579 Number of alignments=35 # 1gd1O read from 1gd1O/merged-good-all-a2m # found chain 1gd1O in template set Warning: unaligning (T0384)G24 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)D24 Warning: unaligning (T0384)E25 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)D24 Warning: unaligning (T0384)L51 because of BadResidue code BAD_PEPTIDE in next template residue (1gd1O)E76 Warning: unaligning (T0384)F52 because of BadResidue code BAD_PEPTIDE at template residue (1gd1O)E76 T0384 2 :LKLGVIGTGAISHHFIEAAHTS 1gd1O 1 :VKVGINGFGRIGRNVFRAALKN T0384 26 :YQLVAIYSRKL 1gd1O 25 :IEVVAVNDLTD T0384 39 :AATFASRY 1gd1O 37 :ANTLAHLL T0384 49 :IQ 1gd1O 73 :VK T0384 53 :DQLEVFF 1gd1O 77 :RDPENLA T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGK 1gd1O 86 :EIGVDIVVESTGRFTKREDAAKHLEAGA T0384 88 :HVILEKPAVSQ 1gd1O 115 :KVIISAPAKNE T0384 111 :KNNCFIFEAARNYH 1gd1O 138A:PKAHHVISNASCTT T0384 125 :EKAFTTIKNFL 1gd1O 155 :APFAKVLHEQF T0384 142 :GADFNYAKYSSKMPDLLAGQTP 1gd1O 166 :GIVRGMMTTVHSYTNDQRILDL T0384 204 :DNSIDLNGDGILFYPDYQ 1gd1O 233 :PTPNVSVVDLVAELEKEV T0384 276 :TMTEEVAAFAHMIQQP 1gd1O 251 :TVEEVNAALKAAAEGE Number of specific fragments extracted= 12 number of extra gaps= 2 total=591 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nytA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0384 read from 1nytA/merged-good-all-a2m # 1nytA read from 1nytA/merged-good-all-a2m # found chain 1nytA in training set T0384 2 :LKLGVIGTGAISHHFIEAAHTS 1nytA 120 :LRILLIGAGGASRGVLLPLLSL T0384 25 :EYQLV 1nytA 142 :DCAVT T0384 31 :IYSRKLETAATFASRYQ 1nytA 147 :ITNRTVSRAEELAKLFA T0384 48 :NIQLFDQLEVFFKSSFDLVYIASPNSL 1nytA 166 :GSIQALSMDELEGHEFDLIINATSSGI T0384 86 :GKHVIL 1nytA 207 :GIYCYD T0384 95 :AVSQ 1nytA 213 :MFYQ T0384 104 :DLIQTAEKNNC 1nytA 221 :PFLAWCEQRGS T0384 115 :FIFEAARNY 1nytA 233 :RNADGLGML T0384 125 :EKAFTTIK 1nytA 242 :VAQAAHAF Number of specific fragments extracted= 9 number of extra gaps= 0 total=600 Number of alignments=37 # 1nytA read from 1nytA/merged-good-all-a2m # found chain 1nytA in training set T0384 2 :LKLGVIGTGAISHHFIEAAHTS 1nytA 120 :LRILLIGAGGASRGVLLPLLSL T0384 25 :EYQLV 1nytA 142 :DCAVT T0384 31 :IYSRKLETAATFASRYQNI 1nytA 147 :ITNRTVSRAEELAKLFAHT T0384 50 :QLFDQLEVF 1nytA 168 :IQALSMDEL T0384 60 :KS 1nytA 177 :EG T0384 62 :SFDLVYIASPNSLH 1nytA 180 :EFDLIINATSSGIS T0384 86 :GKHVIL 1nytA 207 :GIYCYD T0384 95 :AVSQ 1nytA 213 :MFYQ T0384 104 :DLIQTAEKNNC 1nytA 221 :PFLAWCEQRGS T0384 115 :FIFEAA 1nytA 233 :RNADGL T0384 173 :GALMDLGIYPLYAAV 1nytA 239 :GMLVAQAAHAFLLWH T0384 191 :G 1nytA 254 :G T0384 192 :K 1nytA 256 :L T0384 275 :HTMTEEVAAFAH 1nytA 257 :PDVEPVIKQLQE Number of specific fragments extracted= 14 number of extra gaps= 0 total=614 Number of alignments=38 # 1nytA read from 1nytA/merged-good-all-a2m # found chain 1nytA in training set T0384 2 :LKLGVIGTGAISHHFIEAAHTS 1nytA 120 :LRILLIGAGGASRGVLLPLLSL T0384 25 :EYQLV 1nytA 142 :DCAVT T0384 31 :IYSRKLETAATFASRY 1nytA 147 :ITNRTVSRAEELAKLF T0384 47 :QNIQL 1nytA 166 :GSIQA T0384 53 :DQLEVFFKSSFDLVYIASPNSL 1nytA 171 :LSMDELEGHEFDLIINATSSGI T0384 86 :GKHVIL 1nytA 207 :GIYCYD T0384 104 :DLIQTAEKNNCFIFEA 1nytA 221 :PFLAWCEQRGSKRNAD Number of specific fragments extracted= 7 number of extra gaps= 0 total=621 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zh8A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0384/1zh8A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0384/1zh8A/merged-good-all-a2m.gz for input Trying 1zh8A/merged-good-all-a2m Error: Couldn't open file 1zh8A/merged-good-all-a2m or 1zh8A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2cvzA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2cvzA expands to /projects/compbio/data/pdb/2cvz.pdb.gz 2cvzA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0384 read from 2cvzA/merged-good-all-a2m # 2cvzA read from 2cvzA/merged-good-all-a2m # adding 2cvzA to template set # found chain 2cvzA in template set Warning: unaligning (T0384)L2 because first residue in template chain is (2cvzA)E2 T0384 3 :KLGVIGTGAISHHFIEAAHT 2cvzA 3 :KVAFIGLGAMGYPMAGHLAR T0384 25 :EYQLV 2cvzA 23 :RFPTL T0384 31 :IYSRKLETAATFASRYQ 2cvzA 28 :VWNRTFEKALRHQEEFG T0384 49 :IQLFD 2cvzA 45 :SEAVP T0384 55 :LEVF 2cvzA 50 :LERV T0384 61 :SSFDLVYIASPN 2cvzA 54 :AEARVIFTCLPT T0384 73 :SLHFAQAKAA 2cvzA 67 :REVYEVAEAL T0384 83 :LSAGKHVIL 2cvzA 80 :LREGTYWVD T0384 94 :PAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTT 2cvzA 89 :ATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEA T0384 131 :IKNFLAD 2cvzA 138 :AVERVRP T0384 140 :VLG 2cvzA 145 :FLA T0384 144 :DFNYAKYSSKMPD 2cvzA 148 :YAKKVVHVGPVGA T0384 177 :DLGIYPLYAAVRLF 2cvzA 161 :GHAVKAINNALLAV T0384 276 :TMTEEVAAFAHMIQQ 2cvzA 175 :NLWAAGEGLLALVKQ T0384 291 :PDLNLYQTWLYDAGSVHELLYTMRQ 2cvzA 220 :TRAFPKTFALGLLVKDLGIAMGVLD Number of specific fragments extracted= 15 number of extra gaps= 0 total=636 Number of alignments=40 # 2cvzA read from 2cvzA/merged-good-all-a2m # found chain 2cvzA in template set Warning: unaligning (T0384)L2 because first residue in template chain is (2cvzA)E2 T0384 3 :KLGVIGTGAISHHFIEAAHT 2cvzA 3 :KVAFIGLGAMGYPMAGHLAR T0384 25 :EYQLV 2cvzA 23 :RFPTL T0384 31 :IYSRKLETAATFASRYQNI 2cvzA 28 :VWNRTFEKALRHQEEFGSE T0384 51 :LFD 2cvzA 47 :AVP T0384 59 :FKS 2cvzA 50 :LER T0384 62 :SFDLVYIASP 2cvzA 55 :EARVIFTCLP T0384 72 :NSLHFAQAKAA 2cvzA 66 :TREVYEVAEAL T0384 83 :LSAGKHVILE 2cvzA 80 :LREGTYWVDA T0384 95 :AVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTT 2cvzA 90 :TSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEA T0384 131 :IKNFL 2cvzA 138 :AVERV T0384 138 :KQVLG 2cvzA 143 :RPFLA T0384 143 :ADFNYA 2cvzA 149 :AKKVVH T0384 151 :SSK 2cvzA 155 :VGP T0384 295 :LYQTWLYDAGSVHELLYTMRQTAGI 2cvzA 224 :PKTFALGLLVKDLGIAMGVLDGEKA Number of specific fragments extracted= 14 number of extra gaps= 0 total=650 Number of alignments=41 # 2cvzA read from 2cvzA/merged-good-all-a2m # found chain 2cvzA in template set Warning: unaligning (T0384)L2 because first residue in template chain is (2cvzA)E2 T0384 3 :KLGVIGTGAISHHFIEAAHTSGEY 2cvzA 3 :KVAFIGLGAMGYPMAGHLARRFPT T0384 30 :AIYSRKLETAATFASRYQN 2cvzA 27 :LVWNRTFEKALRHQEEFGS T0384 50 :QLFD 2cvzA 46 :EAVP T0384 55 :LEVFF 2cvzA 50 :LERVA T0384 62 :SFDLVYIASPN 2cvzA 55 :EARVIFTCLPT T0384 73 :SLHFAQAKAA 2cvzA 67 :REVYEVAEAL T0384 85 :AG 2cvzA 82 :EG T0384 89 :VILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTT 2cvzA 84 :TYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEA T0384 141 :LGADFNYA 2cvzA 126 :GTLTVMLG T0384 158 :LAGQTPNVFSDRFAG 2cvzA 134 :GPEEAVERVRPFLAY T0384 194 :NDATYHA 2cvzA 150 :KKVVHVG T0384 272 :QAPHTMTEEVAAFAHMI 2cvzA 157 :PVGAGHAVKAINNALLA T0384 302 :DAGSVHELLYTMRQTAGIR 2cvzA 174 :VNLWAAGEGLLALVKQGVS Number of specific fragments extracted= 13 number of extra gaps= 0 total=663 Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dih/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1dih expands to /projects/compbio/data/pdb/1dih.pdb.gz 1dih:Warning: there is no chain 1dih will retry with 1dihA # T0384 read from 1dih/merged-good-all-a2m # 1dih read from 1dih/merged-good-all-a2m # adding 1dih to template set # found chain 1dih in template set Warning: unaligning (T0384)A69 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)T80 Warning: unaligning (T0384)S70 because of BadResidue code BAD_PEPTIDE at template residue (1dih)T80 Warning: unaligning (T0384)Q139 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)T151 Warning: unaligning (T0384)L141 because of BadResidue code BAD_PEPTIDE at template residue (1dih)T151 T0384 2 :LKLGVIGT 1dih 6 :IRVAIAGA T0384 10 :GAISHHFIEAAHTSGEYQLVAIYSRK 1dih 15 :GRMGRQLIQAALALEGVQLGAALERE T0384 47 :Q 1dih 41 :G T0384 48 :NIQLFDQLEVFF 1dih 59 :GVTVQSSLDAVK T0384 61 :SSFDLVYI 1dih 71 :DDFDVFID T0384 71 :PNSLHFAQAKAALSAGKHVILEK 1dih 81 :RPEGTLNHLAFCRQHGKGMVIGT T0384 95 :AVSQPQEWFDLIQT 1dih 104 :TGFDEAGKQAIRDA T0384 112 :NNCFIFEA 1dih 119 :ADIAIVFA T0384 120 :ARNYHEKAFTTIKNFLAD 1dih 129 :FSVGVNVMLKLLEKAAKV T0384 138 :K 1dih 149 :D T0384 147 :YAKYSSKMPDLLAGQTP 1dih 152 :DIEIIEAHHRHKVDAPS T0384 180 :IYPLYAAVRLFG 1dih 172 :LAMGEAIAHALD T0384 192 :KANDATY 1dih 185 :DLKDCAV T0384 201 :QQLDN 1dih 192 :YSREG T0384 206 :SIDLNGDGILFYPD 1dih 215 :DIVGEHTAMFADIG T0384 252 :HIRSAIFTDHQG 1dih 229 :ERLEITHKASSR T0384 278 :TEEVAAFAHMIQ 1dih 241 :MTFANGAVRSAL T0384 312 :TM 1dih 253 :WL Number of specific fragments extracted= 18 number of extra gaps= 2 total=681 Number of alignments=43 # 1dih read from 1dih/merged-good-all-a2m # found chain 1dih in template set Warning: unaligning (T0384)A69 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)T80 Warning: unaligning (T0384)S70 because of BadResidue code BAD_PEPTIDE at template residue (1dih)T80 Warning: unaligning (T0384)V140 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)T151 Warning: unaligning (T0384)L141 because of BadResidue code BAD_PEPTIDE at template residue (1dih)T151 Warning: unaligning (T0384)Y296 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)L261 Warning: unaligning (T0384)Q297 because of BadResidue code BAD_PEPTIDE at template residue (1dih)L261 T0384 2 :LKLGVIGT 1dih 6 :IRVAIAGA T0384 10 :GAISHHFIEAAHTSGEYQLVAIYSR 1dih 15 :GRMGRQLIQAALALEGVQLGAALER T0384 48 :NI 1dih 41 :GS T0384 50 :QLFDQLEVFFK 1dih 61 :TVQSSLDAVKD T0384 62 :SFDLVYI 1dih 72 :DFDVFID T0384 71 :PNSLHFAQAKAALSAGKHVILEK 1dih 81 :RPEGTLNHLAFCRQHGKGMVIGT T0384 95 :AVSQPQEWFDLIQTA 1dih 104 :TGFDEAGKQAIRDAA T0384 112 :NNCFIFEA 1dih 119 :ADIAIVFA T0384 120 :ARNYHEKAFTTIKNFL 1dih 129 :FSVGVNVMLKLLEKAA T0384 137 :D 1dih 145 :K T0384 138 :KQ 1dih 148 :GD T0384 142 :GADFNYAKYSSKMPDLL 1dih 152 :DIEIIEAHHRHKVDAPS T0384 173 :GALMDLG 1dih 169 :GTALAMG T0384 184 :YAAVRLFG 1dih 176 :EAIAHALD T0384 192 :KANDATYHAQQLDNS 1dih 185 :DLKDCAVYSREGHTG T0384 207 :IDLNGDGI 1dih 216 :IVGEHTAM T0384 257 :IFTDHQGNQVQLPIQQAPHTMTEEVAAFA 1dih 224 :FADIGERLEITHKASSRMTFANGAVRSAL T0384 287 :MI 1dih 253 :WL T0384 291 :PDLNL 1dih 255 :SGKES T0384 298 :TWLYDA 1dih 262 :FDMRDV Number of specific fragments extracted= 20 number of extra gaps= 3 total=701 Number of alignments=44 # 1dih read from 1dih/merged-good-all-a2m # found chain 1dih in template set Warning: unaligning (T0384)A69 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)T80 Warning: unaligning (T0384)S70 because of BadResidue code BAD_PEPTIDE at template residue (1dih)T80 Warning: unaligning (T0384)Q139 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)T151 Warning: unaligning (T0384)V140 because of BadResidue code BAD_PEPTIDE at template residue (1dih)T151 Warning: unaligning (T0384)N294 because of BadResidue code BAD_PEPTIDE in next template residue (1dih)L261 Warning: unaligning (T0384)L295 because of BadResidue code BAD_PEPTIDE at template residue (1dih)L261 T0384 2 :LKLGVIGT 1dih 6 :IRVAIAGA T0384 10 :GAISHHFIEAAHTSGEYQLVAIYSRK 1dih 15 :GRMGRQLIQAALALEGVQLGAALERE T0384 49 :IQLFDQLEVFF 1dih 60 :VTVQSSLDAVK T0384 62 :SFDLVYI 1dih 72 :DFDVFID T0384 71 :PNSLHFAQAKAALSAGKHVILEK 1dih 81 :RPEGTLNHLAFCRQHGKGMVIGT T0384 95 :AVSQPQEWFDLIQTA 1dih 104 :TGFDEAGKQAIRDAA T0384 112 :NNCFIFEAARNYH 1dih 119 :ADIAIVFAANFSV T0384 125 :EKAFTTIKNFLAD 1dih 134 :NVMLKLLEKAAKV T0384 138 :K 1dih 149 :D T0384 141 :L 1dih 152 :D T0384 146 :NYAKYSSKMPDL 1dih 153 :IEIIEAHHRHKV T0384 160 :GQTPNV 1dih 165 :DAPSGT T0384 179 :GIYPLYAAVRLFGKANDATYHAQQL 1dih 171 :ALAMGEAIAHALDKDLKDCAVYSRE T0384 204 :DNSIDLNGDGILFYPD 1dih 213 :AGDIVGEHTAMFADIG T0384 221 :QVHIKAGKNIT 1dih 229 :ERLEITHKASS T0384 275 :HTMTEEVAAFAHMIQQPDL 1dih 241 :MTFANGAVRSALWLSGKES T0384 296 :YQTWLY 1dih 262 :FDMRDV Number of specific fragments extracted= 17 number of extra gaps= 3 total=718 Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1h6dA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1h6dA expands to /projects/compbio/data/pdb/1h6d.pdb.gz 1h6dA:# T0384 read from 1h6dA/merged-good-all-a2m # 1h6dA read from 1h6dA/merged-good-all-a2m # adding 1h6dA to template set # found chain 1h6dA in template set T0384 1 :MLKLGVIGTGAISH 1h6dA 83 :RFGYAIVGLGKYAL T0384 15 :HFIEAAHTSGEYQLVAIYSRKLETAATFASRYQ 1h6dA 98 :QILPGFAGCQHSRIEALVSGNAEKAKIVAAEYG T0384 48 :NIQLFDQL 1h6dA 135 :KIYDYSNF T0384 56 :EVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQ 1h6dA 144 :KIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQ T0384 141 :LG 1h6dA 228 :LG T0384 144 :DFNYAKYSSK 1h6dA 230 :KLGMVTTDNS T0384 155 :PDLLAGQ 1h6dA 240 :DVMDQND T0384 163 :P 1h6dA 247 :P T0384 164 :NVFSDRF 1h6dA 251 :WRLRREL T0384 171 :AGGALMDLGIYPLYAAVRLFG 1h6dA 259 :GGGSLMDIGIYGLNGTRYLLG T0384 192 :KANDATYHAQQLDN 1h6dA 281 :EPIEVRAYTYSDPN T0384 206 :SIDLNGDGILFYPDY 1h6dA 300 :EVEDRIIWQMRFRSG T0384 221 :QVHIKAGKNITSNLPCEIYTTDGTLTLNTI 1h6dA 316 :LSHGASSYSTTTTSRFSVQGDKAVLLMDPA T0384 251 :EHIRSAIFTDHQGNQVQLPIQQAPH 1h6dA 349 :YQNLISVQTPGHANQSMMPQFIMPA T0384 276 :TMTEEVAAFAHMIQQPDLNLY 1h6dA 376 :QFSAQLDHLAEAVINNKPVRS T0384 299 :WLYDAGSVHELLYTMRQTAGIRFEAE 1h6dA 397 :PGEEGMQDVRLIQAIYEAARTGRPVN Number of specific fragments extracted= 16 number of extra gaps= 0 total=734 Number of alignments=46 # 1h6dA read from 1h6dA/merged-good-all-a2m # found chain 1h6dA in template set T0384 2 :LKLGVIGTGAISH 1h6dA 84 :FGYAIVGLGKYAL T0384 15 :HFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNI 1h6dA 98 :QILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD T0384 50 :QLFDQLEVFFKS 1h6dA 137 :YDYSNFDKIAKD T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFL 1h6dA 150 :KIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLI T0384 137 :DKQVLG 1h6dA 224 :RENQLG T0384 143 :ADFNYAKYSSKM 1h6dA 231 :LGMVTTDNSDVM T0384 158 :LAGQT 1h6dA 243 :DQNDP T0384 163 :PNVFSDRF 1h6dA 250 :QWRLRREL T0384 171 :AGGALMDLGIYPLYAAVRLFG 1h6dA 259 :GGGSLMDIGIYGLNGTRYLLG T0384 192 :KANDATYHAQQLDN 1h6dA 281 :EPIEVRAYTYSDPN T0384 206 :SIDLNGDGILFYPDYQ 1h6dA 300 :EVEDRIIWQMRFRSGA T0384 222 :VHIKAGKNITSNLPCEIYTTDGTLTLNTIEHIRS 1h6dA 317 :SHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQ T0384 256 :AIFTDHQGNQVQLPIQQAP 1h6dA 353 :ISVQTPGHANQSMMPQFIM T0384 275 :HTMTEEVAAFAHMIQQPD 1h6dA 375 :NQFSAQLDHLAEAVINNK T0384 295 :LYQTWLYDAGSVHELLYTMRQTAGIRFEAE 1h6dA 393 :PVRSPGEEGMQDVRLIQAIYEAARTGRPVN Number of specific fragments extracted= 15 number of extra gaps= 0 total=749 Number of alignments=47 # 1h6dA read from 1h6dA/merged-good-all-a2m # found chain 1h6dA in template set T0384 1 :MLKLGVIGTGAISH 1h6dA 83 :RFGYAIVGLGKYAL T0384 15 :HFIEAAHTSGEYQLVAIYSRKLETAATFASRYQN 1h6dA 98 :QILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGV T0384 49 :IQLFDQLEVFF 1h6dA 136 :IYDYSNFDKIA T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQVLGADFNYAKYSSKMPDLLAGQTPNVFSDRFAGGALMDLGIYPLYAAVRLFGKANDATYHAQQL 1h6dA 148 :DPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYS T0384 204 :DNSIDLNGDGILFYPDYQVHIKAGKNIT 1h6dA 298 :FVEVEDRIIWQMRFRSGALSHGASSYST T0384 232 :SNLPCEIYTTDGTLTLNTIEHIRSAIFTDHQ 1h6dA 327 :TTSRFSVQGDKAVLLMDPATGYYQNLISVQT T0384 263 :GNQVQLPIQQAPHTMTEEVAAFAHMIQQPDLNLYQTWLYDAGSVHELLYTMRQTAGIRFEAE 1h6dA 363 :QSMMPQFIMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTD Number of specific fragments extracted= 7 number of extra gaps= 0 total=756 Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lc0A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0384 read from 1lc0A/merged-good-all-a2m # 1lc0A read from 1lc0A/merged-good-all-a2m # found chain 1lc0A in training set Warning: unaligning (T0384)A317 because last residue in template chain is (1lc0A)C291 T0384 2 :LKLGVIGTGAISHHFIEAAHT 1lc0A 9 :FGVVVVGVGRAGSVRLRDLKD T0384 23 :SGEYQLVAIYSRK 1lc0A 33 :AAFLNLIGFVSRR T0384 46 :YQ 1lc0A 47 :LG T0384 48 :NIQL 1lc0A 52 :EVRQ T0384 54 :QL 1lc0A 57 :SL T0384 56 :EVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLA 1lc0A 60 :DALRSQEIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRREVL T0384 138 :KQ 1lc0A 141 :GK T0384 144 :DFNYAKYSSKMPDLLAG 1lc0A 143 :ELLKGSLRFTASPLEEE T0384 164 :NV 1lc0A 160 :RF T0384 173 :GALMDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDY 1lc0A 162 :GFPAFSGISRLTWLVSLFGELSLISATLEERKEDQYMKMTVQLETQNK T0384 221 :QVHIKAGKNITSN 1lc0A 211 :LLSWIEEKGPGLK T0384 234 :LPCEI 1lc0A 226 :RYVNF T0384 259 :TDHQGNQVQLPIQ 1lc0A 231 :QFTSGSLEEVPSV T0384 272 :QAPHTMTEEVAAFAHMIQQPDLNLY 1lc0A 245 :VNKNIFLKDQDIFVQKLLDQVSAED T0384 297 :QTWLYDAGSVHELLYTMRQT 1lc0A 271 :AAEKKRIMHCLGLASDIQKL Number of specific fragments extracted= 15 number of extra gaps= 0 total=771 Number of alignments=49 # 1lc0A read from 1lc0A/merged-good-all-a2m # found chain 1lc0A in training set Warning: unaligning (T0384)A317 because last residue in template chain is (1lc0A)C291 T0384 2 :LKLGVIGTGAISHHFIEAAHTS 1lc0A 9 :FGVVVVGVGRAGSVRLRDLKDP T0384 24 :GEYQLVAIYSRK 1lc0A 34 :AFLNLIGFVSRR T0384 47 :QNI 1lc0A 46 :ELG T0384 50 :QLF 1lc0A 54 :RQI T0384 54 :QLEVFFKS 1lc0A 57 :SLEDALRS T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFL 1lc0A 66 :EIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRREV T0384 137 :DKQV 1lc0A 140 :LGKE T0384 143 :ADFNYAKYSSKMPDLLAG 1lc0A 144 :LLKGSLRFTASPLEEERF T0384 173 :GALMDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQ 1lc0A 162 :GFPAFSGISRLTWLVSLFGELSLISATLEERKEDQYMKMTVQLETQNKG T0384 222 :VHIKAGKNITSN 1lc0A 212 :LSWIEEKGPGLK T0384 234 :LPCEIYTTDGT 1lc0A 226 :RYVNFQFTSGS T0384 265 :QVQLPI 1lc0A 237 :LEEVPS T0384 271 :QQAPHTMTEEVAAFAHMIQQPDLN 1lc0A 244 :GVNKNIFLKDQDIFVQKLLDQVSA T0384 295 :LYQTWLYDAGSVHELLYTMRQT 1lc0A 269 :DLAAEKKRIMHCLGLASDIQKL Number of specific fragments extracted= 14 number of extra gaps= 0 total=785 Number of alignments=50 # 1lc0A read from 1lc0A/merged-good-all-a2m # found chain 1lc0A in training set T0384 2 :LKLGVIGTGAISHHFIEAAHT 1lc0A 9 :FGVVVVGVGRAGSVRLRDLKD T0384 23 :SGEYQLVAIYSRKL 1lc0A 33 :AAFLNLIGFVSRRE T0384 48 :N 1lc0A 47 :L T0384 54 :QLEVFF 1lc0A 57 :SLEDAL T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLAD 1lc0A 64 :SQEIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRREVLG T0384 141 :LGADFNYAKYSSKMPD 1lc0A 142 :KELLKGSLRFTASPLE T0384 162 :TPNVFSDRFAG 1lc0A 158 :EERFGFPAFSG T0384 180 :IYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNIT 1lc0A 169 :ISRLTWLVSLFGELSLISATLEERKEDQYMKMTVQLETQNKGLLSWIEEKGP T0384 232 :SNLPCEIYTTDGTL 1lc0A 224 :RNRYVNFQFTSGSL T0384 265 :QVQLPIQQAPHTMTEEVAAFAHMIQQP 1lc0A 238 :EEVPSVGVNKNIFLKDQDIFVQKLLDQ T0384 296 :YQTWLYDAGSVHELLYTM 1lc0A 265 :VSAEDLAAEKKRIMHCLG Number of specific fragments extracted= 11 number of extra gaps= 0 total=796 Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gpjA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gpjA expands to /projects/compbio/data/pdb/1gpj.pdb.gz 1gpjA:Skipped atom 116, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 118, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 120, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 122, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 124, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 126, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 128, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 622, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 624, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 626, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 628, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 630, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 632, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 634, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 636, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 638, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 845, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 847, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 849, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 851, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 853, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 855, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 857, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 859, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 861, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 986, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 988, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 990, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 992, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 994, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 996, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 998, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1000, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1002, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1065, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1067, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1069, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1071, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1073, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1075, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1077, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1079, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 1485, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1487, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1489, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1491, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1493, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1495, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1497, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1499, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1501, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1503, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1505, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 1763, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1765, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1767, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1769, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1771, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1773, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1775, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1777, because occupancy 0.200 <= existing 0.800 in 1gpjA Skipped atom 1999, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2001, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2003, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2005, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2007, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2009, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2011, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2013, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2015, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2036, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2038, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2040, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2042, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2044, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2046, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2048, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2050, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2052, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2054, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2056, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2230, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2232, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2234, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2236, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2238, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2240, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2242, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2244, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2246, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2585, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2587, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2589, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2591, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2593, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2595, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2597, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2599, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2601, because occupancy 0.300 <= existing 0.700 in 1gpjA Skipped atom 2675, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2677, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2679, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2681, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2683, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2685, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2687, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2689, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2691, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2693, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2695, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2770, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2772, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2774, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2776, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2778, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2780, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2782, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2784, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2786, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2824, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2826, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2828, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2830, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2832, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2834, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2836, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2838, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 2840, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3007, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3009, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3011, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3013, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3015, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3017, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3019, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3021, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3023, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3118, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3120, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3122, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3124, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3126, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3128, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3130, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3132, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3202, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3204, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3206, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3208, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3210, because occupancy 0.500 <= existing 0.500 in 1gpjA Skipped atom 3212, because occupancy 0.500 <= existing 0.500 in 1gpjA # T0384 read from 1gpjA/merged-good-all-a2m # 1gpjA read from 1gpjA/merged-good-all-a2m # adding 1gpjA to template set # found chain 1gpjA in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTS 1gpjA 168 :KTVLVVGAGEMGKTVAKSLVDR T0384 25 :EYQLVAIYSRKLETAATFASRYQ 1gpjA 190 :GVRAVLVANRTYERAVELARDLG T0384 48 :NIQLFDQL 1gpjA 214 :EAVRFDEL T0384 56 :EVFF 1gpjA 223 :DHLA T0384 62 :SFDLVYIASP 1gpjA 227 :RSDVVVSATA T0384 72 :NSLHFAQAKAALSA 1gpjA 240 :PVIHVDDVREALRK T0384 86 :GKHVI 1gpjA 257 :RSPIL T0384 91 :LE 1gpjA 263 :ID T0384 99 :PQEWFDLIQTAEK 1gpjA 286 :IDDLRVIARENLE T0384 112 :N 1gpjA 303 :E T0384 122 :NYHEKAFTTIKNFLAD 1gpjA 309 :KLIEEELSTVEEELEK Number of specific fragments extracted= 11 number of extra gaps= 0 total=807 Number of alignments=52 # 1gpjA read from 1gpjA/merged-good-all-a2m # found chain 1gpjA in template set Warning: unaligning (T0384)M154 because of BadResidue code BAD_PEPTIDE at template residue (1gpjA)K354 Warning: unaligning (T0384)P155 because of BadResidue code BAD_PEPTIDE at template residue (1gpjA)T355 Warning: unaligning (T0384)Q161 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1gpjA)V361 Warning: unaligning (T0384)P269 because of BadResidue code BAD_PEPTIDE at template residue (1gpjA)L362 Warning: unaligning (T0384)I270 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1gpjA)Q363 Warning: unaligning (T0384)Q271 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1gpjA)D364 Warning: unaligning (T0384)Q289 because of BadResidue code BAD_PEPTIDE in next template residue (1gpjA)E383 Warning: unaligning (T0384)Q290 because of BadResidue code BAD_PEPTIDE at template residue (1gpjA)E383 Warning: unaligning (T0384)P291 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1gpjA)L384 Warning: unaligning (T0384)D292 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1gpjA)P385 Warning: unaligning (T0384)L293 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1gpjA)D386 Warning: unaligning (T0384)N294 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1gpjA)E387 Warning: unaligning (T0384)F321 because last residue in template chain is (1gpjA)G404 T0384 2 :LKLGVIGTGAISHHFIEAAHTS 1gpjA 168 :KTVLVVGAGEMGKTVAKSLVDR T0384 25 :EY 1gpjA 190 :GV T0384 27 :QLV 1gpjA 193 :AVL T0384 31 :IYSRKLETAATFASRYQNI 1gpjA 196 :VANRTYERAVELARDLGGE T0384 50 :QLFDQLEVFFK 1gpjA 216 :VRFDELVDHLA T0384 62 :SFDLVYIASP 1gpjA 227 :RSDVVVSATA T0384 72 :NSLHFAQAKAALSA 1gpjA 240 :PVIHVDDVREALRK T0384 87 :KHVI 1gpjA 258 :SPIL T0384 91 :LE 1gpjA 263 :ID T0384 123 :YHEKAFTTIKNFL 1gpjA 310 :LIEEELSTVEEEL T0384 272 :QAPHTMTEEVAAFAHMI 1gpjA 365 :FAEAYTKRLINVLTSAI T0384 295 :LYQ 1gpjA 388 :YRR T0384 308 :ELLYTMRQTAGIR 1gpjA 391 :AASRALRRASELN Number of specific fragments extracted= 13 number of extra gaps= 2 total=820 Number of alignments=53 # 1gpjA read from 1gpjA/merged-good-all-a2m # found chain 1gpjA in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTS 1gpjA 168 :KTVLVVGAGEMGKTVAKSLVDR T0384 25 :EYQLVAIYSRKLETAATFASRYQN 1gpjA 190 :GVRAVLVANRTYERAVELARDLGG T0384 50 :QLFD 1gpjA 214 :EAVR T0384 55 :LEVFF 1gpjA 218 :FDELV T0384 62 :SFDLVYIASP 1gpjA 227 :RSDVVVSATA T0384 72 :NSLHFAQAKAALSA 1gpjA 240 :PVIHVDDVREALRK T0384 86 :GKHVIL 1gpjA 257 :RSPILI T0384 96 :VSQPQEWFDLIQTAEK 1gpjA 283 :VRTIDDLRVIARENLE T0384 121 :RNYHEKAFTTIKNFLAD 1gpjA 308 :EKLIEEELSTVEEELEK Number of specific fragments extracted= 9 number of extra gaps= 0 total=829 Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ldnA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ldnA expands to /projects/compbio/data/pdb/1ldn.pdb.gz 1ldnA:# T0384 read from 1ldnA/merged-good-all-a2m # 1ldnA read from 1ldnA/merged-good-all-a2m # adding 1ldnA to template set # found chain 1ldnA in template set Warning: unaligning (T0384)N72 because of BadResidue code BAD_PEPTIDE in next template residue (1ldnA)N99 Warning: unaligning (T0384)K80 because of BadResidue code BAD_PEPTIDE in next template residue (1ldnA)K112 Warning: unaligning (T0384)A81 because of BadResidue code BAD_PEPTIDE at template residue (1ldnA)K112 Warning: unaligning (T0384)Y181 because of BadResidue code BAD_PEPTIDE in next template residue (1ldnA)D166 Warning: unaligning (T0384)P182 because of BadResidue code BAD_PEPTIDE at template residue (1ldnA)D166 T0384 2 :LKLGVIGTGAISHHFIEAAHTSG 1ldnA 21 :ARVVVIGAGFVGASYVFALMNQG T0384 26 :YQLVAIYSRKLETAATFASRYQ 1ldnA 45 :ADEIVLIDANESKAIGDAMDFN T0384 48 :NIQL 1ldnA 75 :PVDI T0384 52 :FDQLEVF 1ldnA 80 :HGDYDDC T0384 61 :SSFDLVYIASP 1ldnA 87 :RDADLVVICAG T0384 73 :SLHFAQA 1ldnA 104 :ETRLDLV T0384 82 :ALSA 1ldnA 113 :NIAI T0384 102 :WFDLIQTAEKNNC 1ldnA 117 :FRSIVESVMASGF T0384 115 :FIFEAARNYHEKAFTTIKNFLA 1ldnA 131 :GLFLVATNPVDILTYATWKFSG T0384 141 :LG 1ldnA 153 :LP T0384 163 :PNV 1ldnA 155 :HER T0384 174 :ALMDLGI 1ldnA 158 :VIGSGTI T0384 183 :LYAAVRLFG 1ldnA 167 :TARFRFLLG T0384 192 :KANDATYHAQQL 1ldnA 181 :APQNVHAYIIGE T0384 205 :N 1ldnA 265 :N T0384 206 :SIDLNGDGIL 1ldnA 267 :NAILTVSAYL T0384 218 :PD 1ldnA 277 :DG T0384 254 :RSAIFTDHQGNQVQLPIQQAPH 1ldnA 287 :IGVPAVINRNGIREVIEIELND T0384 276 :TMTEEVAAFAHMIQ 1ldnA 313 :RFHHSAATLKSVLA Number of specific fragments extracted= 19 number of extra gaps= 3 total=848 Number of alignments=55 # 1ldnA read from 1ldnA/merged-good-all-a2m # found chain 1ldnA in template set Warning: unaligning (T0384)K80 because of BadResidue code BAD_PEPTIDE in next template residue (1ldnA)K112 Warning: unaligning (T0384)A81 because of BadResidue code BAD_PEPTIDE at template residue (1ldnA)K112 Warning: unaligning (T0384)Y181 because of BadResidue code BAD_PEPTIDE in next template residue (1ldnA)D166 Warning: unaligning (T0384)P182 because of BadResidue code BAD_PEPTIDE at template residue (1ldnA)D166 Warning: unaligning (T0384)H275 because of BadResidue code BAD_PEPTIDE at template residue (1ldnA)N312 T0384 2 :LKLGVIGTGAISHHFIEAAHTS 1ldnA 21 :ARVVVIGAGFVGASYVFALMNQ T0384 25 :EY 1ldnA 43 :GI T0384 27 :QLV 1ldnA 47 :EIV T0384 31 :IYSRKLETAATFASRYQNI 1ldnA 50 :LIDANESKAIGDAMDFNHG T0384 50 :QLFDQLEVF 1ldnA 78 :IWHGDYDDC T0384 62 :SFDLVYIASP 1ldnA 88 :DADLVVICAG T0384 72 :NSLHFAQA 1ldnA 103 :GETRLDLV T0384 82 :A 1ldnA 113 :N T0384 99 :PQEWFDLIQTAEKNNC 1ldnA 114 :IAIFRSIVESVMASGF T0384 115 :FIFEAAR 1ldnA 132 :LFLVATN T0384 123 :YHEKAFTTIKNFL 1ldnA 139 :PVDILTYATWKFS T0384 139 :Q 1ldnA 152 :G T0384 154 :MPDLL 1ldnA 153 :LPHER T0384 174 :ALMDLGI 1ldnA 158 :VIGSGTI T0384 183 :LYAAVRLFG 1ldnA 167 :TARFRFLLG T0384 192 :KANDATYHAQQLDNS 1ldnA 181 :APQNVHAYIIGEHGD T0384 207 :IDLNGDGILFYPDY 1ldnA 266 :ENAILTVSAYLDGL T0384 254 :RS 1ldnA 283 :RD T0384 256 :AIFTDHQGNQVQLPIQQAP 1ldnA 290 :PAVINRNGIREVIEIELND T0384 276 :TMTEEVAAFAHMIQ 1ldnA 313 :RFHHSAATLKSVLA Number of specific fragments extracted= 20 number of extra gaps= 3 total=868 Number of alignments=56 # 1ldnA read from 1ldnA/merged-good-all-a2m # found chain 1ldnA in template set Warning: unaligning (T0384)N72 because of BadResidue code BAD_PEPTIDE in next template residue (1ldnA)N99 Warning: unaligning (T0384)K80 because of BadResidue code BAD_PEPTIDE in next template residue (1ldnA)K112 Warning: unaligning (T0384)A81 because of BadResidue code BAD_PEPTIDE at template residue (1ldnA)K112 Warning: unaligning (T0384)Y181 because of BadResidue code BAD_PEPTIDE in next template residue (1ldnA)D166 Warning: unaligning (T0384)P182 because of BadResidue code BAD_PEPTIDE at template residue (1ldnA)D166 Warning: unaligning (T0384)F216 because of BadResidue code BAD_PEPTIDE in next template residue (1ldnA)I206 Warning: unaligning (T0384)Y217 because of BadResidue code BAD_PEPTIDE at template residue (1ldnA)I206 Warning: unaligning (T0384)Q271 because of BadResidue code BAD_PEPTIDE in next template residue (1ldnA)E221 Warning: unaligning (T0384)Q272 because of BadResidue code BAD_PEPTIDE at template residue (1ldnA)E221 T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRY 1ldnA 21 :ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDF T0384 47 :QNIQLFDQLEVF 1ldnA 75 :PVDIWHGDYDDC T0384 61 :SSFDLVYIASP 1ldnA 87 :RDADLVVICAG T0384 73 :SLHFAQA 1ldnA 104 :ETRLDLV T0384 82 :ALS 1ldnA 113 :NIA T0384 101 :EWFDLIQTAEKNN 1ldnA 116 :IFRSIVESVMASG T0384 114 :C 1ldnA 131 :G T0384 116 :IFEAARNYHEKAFTTIKNFLA 1ldnA 132 :LFLVATNPVDILTYATWKFSG T0384 154 :MPDL 1ldnA 153 :LPHE T0384 173 :GALMDLGI 1ldnA 157 :RVIGSGTI T0384 183 :LYAAVRLFG 1ldnA 167 :TARFRFLLG T0384 192 :KANDATYHAQQLDNSIDLNGDGIL 1ldnA 181 :APQNVHAYIIGEHGDTELPVWSQA T0384 218 :PD 1ldnA 207 :GV T0384 263 :GNQVQLPI 1ldnA 212 :RKLVESKG T0384 273 :APHTMTEEVAAFAHMIQQ 1ldnA 222 :AQKDLERIFVNVRDAAYQ T0384 294 :NLYQTWLYDAGSVHELLYT 1ldnA 245 :GATYYGIAMGLARVTRAIL Number of specific fragments extracted= 16 number of extra gaps= 5 total=884 Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vpdA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0384 read from 1vpdA/merged-good-all-a2m # 1vpdA read from 1vpdA/merged-good-all-a2m # found chain 1vpdA in training set Warning: unaligning (T0384)L2 because first residue in template chain is (1vpdA)M3 Warning: unaligning (T0384)K3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vpdA)K4 Warning: unaligning (T0384)I49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vpdA)E47 Warning: unaligning (T0384)Q50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vpdA)E47 Warning: unaligning (T0384)V140 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vpdA)A156 Warning: unaligning (T0384)L141 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vpdA)A156 T0384 4 :LGVIGTGAISHHFIEAAHTS 1vpdA 5 :VGFIGLGIMGKPMSKNLLKA T0384 25 :EYQLV 1vpdA 25 :GYSLV T0384 31 :IYSRKLETAATFASR 1vpdA 30 :VSDRNPEAIADVIAA T0384 48 :N 1vpdA 45 :G T0384 51 :LFDQL 1vpdA 48 :TASTA T0384 56 :EVFF 1vpdA 54 :AIAE T0384 62 :SFDLVYIASPN 1vpdA 58 :QCDVIITMLPN T0384 73 :SLHFAQAKA 1vpdA 70 :PHVKEVALG T0384 82 :ALSA 1vpdA 82 :IIEG T0384 86 :GKHVILE 1vpdA 89 :GTVLIDM T0384 95 :AVSQPQEWFDLIQTAEKNNCFIFEAARNYHEK 1vpdA 96 :SSIAPLASREISDALKAKGVEMLDAPVSGGEP T0384 127 :AFTTIKNFLAD 1vpdA 144 :IFDKYYDLMKA T0384 142 :G 1vpdA 157 :G T0384 144 :DFNYAK 1vpdA 158 :SVVHTG T0384 163 :P 1vpdA 164 :D T0384 277 :MTEEVAAFAHM 1vpdA 165 :IGAGNVTKLAN T0384 299 :WLYDAGSVHELLYTMRQTAGIRFE 1vpdA 176 :QVIVALNIAAMSEALTLATKAGVN Number of specific fragments extracted= 17 number of extra gaps= 2 total=901 Number of alignments=58 # 1vpdA read from 1vpdA/merged-good-all-a2m # found chain 1vpdA in training set Warning: unaligning (T0384)L2 because first residue in template chain is (1vpdA)M3 Warning: unaligning (T0384)K3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vpdA)K4 Warning: unaligning (T0384)N48 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vpdA)E47 Warning: unaligning (T0384)I49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vpdA)E47 Warning: unaligning (T0384)Y296 because of BadResidue code BAD_PEPTIDE in next template residue (1vpdA)G232 Warning: unaligning (T0384)Q297 because of BadResidue code BAD_PEPTIDE at template residue (1vpdA)G232 T0384 4 :LGVIGTGAISHHFIEAAHTS 1vpdA 5 :VGFIGLGIMGKPMSKNLLKA T0384 25 :EYQLV 1vpdA 25 :GYSLV T0384 31 :IYSRKLETAATFAS 1vpdA 30 :VSDRNPEAIADVIA T0384 46 :YQ 1vpdA 44 :AG T0384 51 :LFDQLEVFFK 1vpdA 48 :TASTAKAIAE T0384 62 :SFDLVYIASPNSLH 1vpdA 58 :QCDVIITMLPNSPH T0384 76 :FAQAKA 1vpdA 73 :KEVALG T0384 82 :ALSA 1vpdA 82 :IIEG T0384 86 :GKHVILE 1vpdA 89 :GTVLIDM T0384 95 :AVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFT 1vpdA 96 :SSIAPLASREISDALKAKGVEMLDAPVSGGEPKAI T0384 137 :DKQ 1vpdA 131 :DGT T0384 146 :NYAKYSSK 1vpdA 134 :LSVMVGGD T0384 156 :DLLAG 1vpdA 206 :AIRGG T0384 275 :HTMTEEVAAFAHMIQQPDL 1vpdA 211 :LAGSTVLDAKAPMVMDRNF T0384 295 :L 1vpdA 230 :K T0384 298 :TWLYDAGSVHELLYTMRQTAGIRF 1vpdA 233 :FRIDLHIKDLANALDTSHGVGAQL Number of specific fragments extracted= 16 number of extra gaps= 2 total=917 Number of alignments=59 # 1vpdA read from 1vpdA/merged-good-all-a2m # found chain 1vpdA in training set Warning: unaligning (T0384)L2 because first residue in template chain is (1vpdA)M3 Warning: unaligning (T0384)K3 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vpdA)K4 Warning: unaligning (T0384)I49 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vpdA)E47 Warning: unaligning (T0384)Q50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vpdA)E47 Warning: unaligning (T0384)A193 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vpdA)A156 Warning: unaligning (T0384)N194 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vpdA)A156 T0384 4 :LGVIGTGAISHHFIEAAHTS 1vpdA 5 :VGFIGLGIMGKPMSKNLLKA T0384 25 :EYQLV 1vpdA 25 :GYSLV T0384 31 :IYSRKLETAATFASR 1vpdA 30 :VSDRNPEAIADVIAA T0384 51 :LFDQLEVFF 1vpdA 48 :TASTAKAIA T0384 62 :SFDLVYIASPN 1vpdA 58 :QCDVIITMLPN T0384 73 :SLHFAQAK 1vpdA 70 :PHVKEVAL T0384 82 :ALS 1vpdA 82 :IIE T0384 86 :GK 1vpdA 89 :GT T0384 89 :VILEK 1vpdA 91 :VLIDM T0384 95 :AVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTT 1vpdA 96 :SSIAPLASREISDALKAKGVEMLDAPVSGGEPKAID T0384 141 :LGADFNYA 1vpdA 132 :GTLSVMVG T0384 152 :SKMP 1vpdA 140 :GDKA T0384 182 :PLYAAVRLFGK 1vpdA 144 :IFDKYYDLMKA T0384 195 :DATYHA 1vpdA 157 :GSVVHT T0384 271 :QQAPHTMTEEVAAFAHM 1vpdA 163 :GDIGAGNVTKLANQVIV T0384 301 :YDAGSVHELLYTMRQTAGI 1vpdA 180 :ALNIAAMSEALTLATKAGV Number of specific fragments extracted= 16 number of extra gaps= 2 total=933 Number of alignments=60 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xeaA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xeaA expands to /projects/compbio/data/pdb/1xea.pdb.gz 1xeaA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0384 read from 1xeaA/merged-good-all-a2m # 1xeaA read from 1xeaA/merged-good-all-a2m # adding 1xeaA to template set # found chain 1xeaA in template set T0384 2 :LKLGVIGTGAISH 1xeaA 3 :LKIAMIGLGDIAQ T0384 15 :HFIEAAHTSGEYQLV 1xeaA 17 :AYLPVLAQWPDIELV T0384 31 :IYSRKLETAATFASRYQNIQLFDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQ 1xeaA 32 :LCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFNRRHIPLYNQHLSELAQQE T0384 141 :LG 1xeaA 141 :CG T0384 144 :DFNYAKYSSKMPDLLAGQ 1xeaA 143 :ALRSLRWEKHRHALPGDI T0384 174 :ALMDLGIYPLYAAVRLFG 1xeaA 163 :FVFDDFIHPLDSVNLSRQ T0384 192 :KANDATYHAQQLD 1xeaA 182 :NLDDLHLTYHMSE T0384 206 :SIDLNGDGILFYPDYQVHIKAGKNITSN 1xeaA 195 :GLLARLDVQWQTGDTLLHASMNRQFGIT T0384 234 :LPCEIYTTDGTLTLNTI 1xeaA 224 :EHVTASYDNVAYLFDSF T0384 253 :IRSAIFTDHQGNQVQLPIQQAPH 1xeaA 241 :TQGKMWRDNQESRVALKDWTPML T0384 276 :TMTEEVAAFAHMIQQPDLNLY 1xeaA 267 :GFDAMVQDWLQVAAAGKLPTH T0384 299 :WLYDAGSVHELLYTMRQTAG 1xeaA 288 :IIERNLASHQLAEAICQQIT Number of specific fragments extracted= 12 number of extra gaps= 0 total=945 Number of alignments=61 # 1xeaA read from 1xeaA/merged-good-all-a2m # found chain 1xeaA in template set T0384 2 :LKLGVIGTGAISH 1xeaA 3 :LKIAMIGLGDIAQ T0384 15 :HFIEAAHTSGEYQLV 1xeaA 17 :AYLPVLAQWPDIELV T0384 31 :IYSRKLETAATFASRYQNIQLFDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFL 1xeaA 32 :LCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFNRRHIPLYNQHLSEL T0384 137 :DKQVLG 1xeaA 137 :AQQECG T0384 143 :ADFNYAKYSSK 1xeaA 144 :LRSLRWEKHRH T0384 156 :DLLAGQT 1xeaA 155 :ALPGDIR T0384 173 :GALMDLGIYPLYAAVRLFG 1xeaA 162 :TFVFDDFIHPLDSVNLSRQ T0384 192 :KANDATYHAQQL 1xeaA 182 :NLDDLHLTYHMS T0384 205 :NSIDLNGDGILFYPDYQVHIKAGKNITSN 1xeaA 194 :EGLLARLDVQWQTGDTLLHASMNRQFGIT T0384 234 :LPCEIYTTDGTLTLNTIEHIR 1xeaA 224 :EHVTASYDNVAYLFDSFTQGK T0384 257 :IFTDHQGNQVQLPIQQAP 1xeaA 245 :MWRDNQESRVALKDWTPM T0384 275 :HTMTEEVAAFAHMIQQPD 1xeaA 266 :KGFDAMVQDWLQVAAAGK T0384 295 :LYQTWLYDAGSVHELLYTMRQTAGI 1xeaA 284 :LPTHIIERNLASHQLAEAICQQITQ Number of specific fragments extracted= 13 number of extra gaps= 0 total=958 Number of alignments=62 # 1xeaA read from 1xeaA/merged-good-all-a2m # found chain 1xeaA in template set T0384 1 :MLKLGVIGTGAISH 1xeaA 2 :SLKIAMIGLGDIAQ T0384 15 :HFIEAAHTSGEYQLV 1xeaA 17 :AYLPVLAQWPDIELV T0384 31 :IYSRKLETAATFASRYQNIQLFDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQVLGADFNYAKYSSKMPDL 1xeaA 32 :LCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFNRRHIPLYNQHLSELAQQECGALRSLRWEKHRHALPG T0384 160 :GQTP 1xeaA 159 :DIRT T0384 174 :ALMDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNIT 1xeaA 163 :FVFDDFIHPLDSVNLSRQCNLDDLHLTYHMSEGLLARLDVQWQTGDTLLHASMNRQFG T0384 232 :SNLPCEIYTTDGTLTLNTIEHIRSAI 1xeaA 222 :TTEHVTASYDNVAYLFDSFTQGKMWR T0384 260 :DHQ 1xeaA 248 :DNQ T0384 263 :GNQVQLPIQQAPHTMTEEVAAFAHMIQQPDLNLYQTWLYDAGSVHELLYTMRQ 1xeaA 254 :VALKDWTPMLASKGFDAMVQDWLQVAAAGKLPTHIIERNLASHQLAEAICQQI Number of specific fragments extracted= 8 number of extra gaps= 0 total=966 Number of alignments=63 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2g5cA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2g5cA expands to /projects/compbio/data/pdb/2g5c.pdb.gz 2g5cA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0384 read from 2g5cA/merged-good-all-a2m # 2g5cA read from 2g5cA/merged-good-all-a2m # adding 2g5cA to template set # found chain 2g5cA in template set T0384 3 :KLGVIGTGAISHHFIEAAHTSG 2g5cA 32 :NVLIVGVGFMGGSFAKSLRRSG T0384 25 :EYQLV 2g5cA 55 :KGKIY T0384 31 :IYSRKLETAATFASR 2g5cA 60 :GYDINPESISKAVDL T0384 47 :QNI 2g5cA 75 :GII T0384 50 :QLFDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSA 2g5cA 79 :EGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYI T0384 86 :GKHVILE 2g5cA 118 :DATVTDQ T0384 95 :AVSQPQEWFDLIQTAE 2g5cA 125 :GSVKGKLVYDLENILG T0384 112 :NNCFIFEAARNYHEK 2g5cA 166 :EGKKVILTPTKKTDK T0384 127 :AFTTIKNFLAD 2g5cA 182 :RLKLVKRVWED T0384 141 :LG 2g5cA 193 :VG T0384 148 :AKYSS 2g5cA 195 :GVVEY T0384 204 :DNSIDL 2g5cA 232 :TPEVDL T0384 258 :FTDHQGN 2g5cA 238 :FKYPGGG T0384 276 :TMTEEVAAFAHMIQQ 2g5cA 254 :SDPIMWRDIFLENKE T0384 305 :SVHELLYTMR 2g5cA 269 :NVMKAIEGFE Number of specific fragments extracted= 15 number of extra gaps= 0 total=981 Number of alignments=64 # 2g5cA read from 2g5cA/merged-good-all-a2m # found chain 2g5cA in template set Warning: unaligning (T0384)I270 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2g5cA)A252 Warning: unaligning (T0384)P274 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2g5cA)A252 T0384 2 :LKLGVIGTGAISHHFIEAAHTS 2g5cA 31 :QNVLIVGVGFMGGSFAKSLRRS T0384 25 :EY 2g5cA 53 :GF T0384 27 :QLV 2g5cA 57 :KIY T0384 31 :IYSRKLETAATFASR 2g5cA 60 :GYDINPESISKAVDL T0384 47 :QNI 2g5cA 75 :GII T0384 50 :QLFDQLEVFFKSSFDLVYIASPNSLHFAQAKAA 2g5cA 79 :EGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKL T0384 86 :GKHVILE 2g5cA 118 :DATVTDQ T0384 93 :KPAV 2g5cA 173 :TPTK T0384 97 :SQPQEWFDLIQTAEKNNCFIFEA 2g5cA 178 :TDKKRLKLVKRVWEDVGGVVEYM T0384 120 :ARNYHEKAFTTIK 2g5cA 210 :GVVSHLPHAVAFA T0384 133 :NFL 2g5cA 226 :TLI T0384 156 :DLLAGQTPNVFSDRFAG 2g5cA 229 :HMSTPEVDLFKYPGGGF T0384 269 :P 2g5cA 247 :D T0384 275 :HTMTEEVAAFAHMIQ 2g5cA 253 :KSDPIMWRDIFLENK T0384 304 :GSVHELLYTMRQTAG 2g5cA 268 :ENVMKAIEGFEKSLN Number of specific fragments extracted= 15 number of extra gaps= 0 total=996 Number of alignments=65 # 2g5cA read from 2g5cA/merged-good-all-a2m # found chain 2g5cA in template set T0384 3 :KLGVIGTGAISHHFIEAAHTSG 2g5cA 32 :NVLIVGVGFMGGSFAKSLRRSG T0384 26 :YQLVA 2g5cA 56 :GKIYG T0384 32 :YSRKLETAATFASR 2g5cA 61 :YDINPESISKAVDL T0384 47 :QN 2g5cA 75 :GI T0384 49 :IQLFDQLEVFFKSSFDLVYIASPNSLHFAQAKAA 2g5cA 78 :DEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKL T0384 86 :GKHVILEKPAV 2g5cA 118 :DATVTDQGSVK T0384 99 :PQEWFDLIQTAEK 2g5cA 129 :GKLVYDLENILGK T0384 112 :NNCFIFEAARNYHE 2g5cA 166 :EGKKVILTPTKKTD T0384 126 :KAFTTIKNFLAD 2g5cA 181 :KRLKLVKRVWED T0384 140 :VL 2g5cA 193 :VG Number of specific fragments extracted= 10 number of extra gaps= 0 total=1006 Number of alignments=66 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gd1O/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2gd1O expands to /projects/compbio/data/pdb/2gd1.pdb.gz 2gd1O:# T0384 read from 2gd1O/merged-good-all-a2m # 2gd1O read from 2gd1O/merged-good-all-a2m # adding 2gd1O to template set # found chain 2gd1O in template set Warning: unaligning (T0384)K3 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)V3 Warning: unaligning (T0384)L4 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)V3 Warning: unaligning (T0384)I116 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)I144 Warning: unaligning (T0384)F117 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)I144 Warning: unaligning (T0384)M277 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)E253 Warning: unaligning (T0384)T278 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)E253 T0384 2 :L 2gd1O 1 :V T0384 5 :GVIGTGAISHHFIEAAHTSGEYQLVAIYS 2gd1O 4 :GINGFGRIGRNVFRAALKNPDIEVVAVND T0384 34 :RKLE 2gd1O 34 :TDAN T0384 41 :TFASRYQ 2gd1O 39 :TLAHLLK T0384 48 :NIQLFDQLEVF 2gd1O 72 :IVKAERDPENL T0384 59 :FKSSFDLVYIASPNSLHFAQAKAALSAG 2gd1O 85 :GEIGVDIVVESTGRFTKREDAAKHLEAG T0384 87 :KHVILEKP 2gd1O 114 :KKVIISAP T0384 95 :AVSQPQ 2gd1O 130 :MGVNQD T0384 111 :KNNCF 2gd1O 138A:PKAHH T0384 118 :EAARNY 2gd1O 145 :SNASCT T0384 124 :HEKAFTTIKNFL 2gd1O 154 :LAPFAKVLHEQF T0384 144 :DFNYAKYS 2gd1O 166 :GIVRGMMT T0384 153 :KMPDLLAGQTPNVFSDRFAGGALMD 2gd1O 181 :DQRILDLPHKDLRRARAAAESIIPT T0384 179 :GIYPLYAAVRLFGKAN 2gd1O 207 :TTGAAKAVALVLPELK T0384 195 :DATYHAQQLDNSIDLNGDGILFYPDY 2gd1O 224 :KLNGMAMRVPTPNVSVVDLVAELEKE T0384 276 :T 2gd1O 251 :T T0384 279 :EEVAAFAHMIQQ 2gd1O 254 :EVNAALKAAAEG T0384 299 :WLYDAGSVHELLYTMRQ 2gd1O 314 :ETGYSHRVVDLAAYIAS Number of specific fragments extracted= 18 number of extra gaps= 3 total=1024 Number of alignments=67 # 2gd1O read from 2gd1O/merged-good-all-a2m # found chain 2gd1O in template set Warning: unaligning (T0384)K3 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)V3 Warning: unaligning (T0384)L4 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)V3 Warning: unaligning (T0384)I116 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)I144 Warning: unaligning (T0384)F117 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)I144 Warning: unaligning (T0384)M277 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)E253 Warning: unaligning (T0384)T278 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)E253 T0384 2 :L 2gd1O 1 :V T0384 5 :GVIGTGAISHHFIEAAHTSGEYQLVAIYS 2gd1O 4 :GINGFGRIGRNVFRAALKNPDIEVVAVND T0384 34 :RKLE 2gd1O 34 :TDAN T0384 41 :TFASRYQNI 2gd1O 39 :TLAHLLKYD T0384 50 :QLFDQLEVF 2gd1O 74 :KAERDPENL T0384 59 :FKS 2gd1O 84 :WGE T0384 62 :SFDLVYIASPNSLHFAQAKAALSAG 2gd1O 88 :GVDIVVESTGRFTKREDAAKHLEAG T0384 87 :KHVILEKPAV 2gd1O 114 :KKVIISAPAK T0384 97 :SQP 2gd1O 137 :YDP T0384 112 :NNCF 2gd1O 139 :KAHH T0384 118 :EAARN 2gd1O 145 :SNASC T0384 123 :YHEKAFTTIKNFL 2gd1O 153 :CLAPFAKVLHEQF T0384 142 :GADFNYAKYSSK 2gd1O 166 :GIVRGMMTTVHS T0384 154 :MPDLLAG 2gd1O 218 :LPELKGK T0384 196 :ATYHAQQLDNSIDLNGDGILFYPDY 2gd1O 225 :LNGMAMRVPTPNVSVVDLVAELEKE T0384 275 :HT 2gd1O 250 :VT T0384 279 :EEVAAFAHMIQQPDLN 2gd1O 254 :EVNAALKAAAEGELKG Number of specific fragments extracted= 17 number of extra gaps= 3 total=1041 Number of alignments=68 # 2gd1O read from 2gd1O/merged-good-all-a2m # found chain 2gd1O in template set Warning: unaligning (T0384)K3 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)V3 Warning: unaligning (T0384)L4 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)V3 Warning: unaligning (T0384)I116 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)I144 Warning: unaligning (T0384)F117 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)I144 Warning: unaligning (T0384)M277 because of BadResidue code BAD_PEPTIDE in next template residue (2gd1O)E253 Warning: unaligning (T0384)T278 because of BadResidue code BAD_PEPTIDE at template residue (2gd1O)E253 T0384 2 :L 2gd1O 1 :V T0384 5 :GVIGTGAISHHFIEAAHTSGEYQLVAIYS 2gd1O 4 :GINGFGRIGRNVFRAALKNPDIEVVAVND T0384 34 :RKLE 2gd1O 34 :TDAN T0384 41 :TFASRY 2gd1O 39 :TLAHLL T0384 49 :IQLFDQLEVFF 2gd1O 73 :VKAERDPENLA T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGK 2gd1O 86 :EIGVDIVVESTGRFTKREDAAKHLEAGA T0384 88 :HVILEKPAVS 2gd1O 115 :KVIISAPAKN T0384 111 :KNNCF 2gd1O 138A:PKAHH T0384 118 :EAARNYH 2gd1O 145 :SNASCTT T0384 125 :EKAFTTIKNFL 2gd1O 155 :APFAKVLHEQF T0384 142 :GADFNYAKYSSKMPDLLAGQTP 2gd1O 166 :GIVRGMMTTVHSYTNDQRILDL T0384 164 :NVFSDRFAG 2gd1O 215 :ALVLPELKG T0384 196 :ATYHAQQLDNSIDLNGDGILFYPDYQ 2gd1O 225 :LNGMAMRVPTPNVSVVDLVAELEKEV T0384 276 :T 2gd1O 251 :T T0384 279 :EEVAAFAHMIQQP 2gd1O 254 :EVNAALKAAAEGE Number of specific fragments extracted= 15 number of extra gaps= 3 total=1056 Number of alignments=69 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1s7cA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0384/1s7cA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0384/1s7cA/merged-good-all-a2m.gz for input Trying 1s7cA/merged-good-all-a2m Error: Couldn't open file 1s7cA/merged-good-all-a2m or 1s7cA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2czcA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2czcA expands to /projects/compbio/data/pdb/2czc.pdb.gz 2czcA:# T0384 read from 2czcA/merged-good-all-a2m # 2czcA read from 2czcA/merged-good-all-a2m # adding 2czcA to template set # found chain 2czcA in template set T0384 1 :MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRK 2czcA 2 :KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTK T0384 36 :LETAATFASR 2czcA 38 :DFEAYRAKEL T0384 47 :Q 2czcA 48 :G T0384 48 :NIQLFDQL 2czcA 66 :GFEVAGTL T0384 56 :EVF 2czcA 75 :DLL T0384 61 :SSFDLVYIASPNSLHFAQAKAALSAGKHVILE 2czcA 78 :EKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQ T0384 95 :AVSQPQ 2czcA 110 :GGEKAD T0384 115 :FIFEAARN 2czcA 119 :VSFVAQAN T0384 166 :FSDRFAGGALMDLGIYPLYAAVRLFG 2czcA 127 :YEAALGKNYVRVVSCNTTGLVRTLSA T0384 192 :KANDATYHAQQL 2czcA 156 :YADYVYAVMIRR T0384 204 :DNSIDLNGDGILFYPD 2czcA 212 :PTTLMHVHSVMVELKK T0384 283 :AFAHMIQQ 2czcA 233 :DVIDIFEN T0384 291 :PDLNLY 2czcA 249 :KEKGFD T0384 299 :WLYDAGSVHE 2czcA 255 :STAQIIEFAR Number of specific fragments extracted= 14 number of extra gaps= 0 total=1070 Number of alignments=70 # 2czcA read from 2czcA/merged-good-all-a2m # found chain 2czcA in template set T0384 1 :M 2czcA 1 :M T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKL 2czcA 3 :VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKP T0384 37 :ETAATFAS 2czcA 39 :FEAYRAKE T0384 46 :YQNI 2czcA 47 :LGIP T0384 50 :QLFDQLEVFFK 2czcA 68 :EVAGTLNDLLE T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILE 2czcA 79 :KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQ T0384 95 :AV 2czcA 129 :AA T0384 112 :NNCFIFEAARNYHEKAFTTIK 2czcA 131 :LGKNYVRVVSCNTTGLVRTLS T0384 134 :FL 2czcA 152 :AI T0384 138 :KQV 2czcA 154 :REY T0384 143 :ADFNYAKYSSK 2czcA 157 :ADYVYAVMIRR T0384 175 :LMDLGIYPLYAAVRLFG 2czcA 299 :ESDVIPENIDAIRAMFE T0384 275 :HTMTEEVAAFAHMI 2czcA 317 :ADKWDSIKKTNKSL Number of specific fragments extracted= 13 number of extra gaps= 0 total=1083 Number of alignments=71 # 2czcA read from 2czcA/merged-good-all-a2m # found chain 2czcA in template set T0384 1 :MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKL 2czcA 2 :KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKP T0384 37 :ETAATFASRY 2czcA 39 :FEAYRAKELG T0384 49 :IQLFDQLEVFF 2czcA 67 :FEVAGTLNDLL T0384 62 :SFDLVYIASPNS 2czcA 79 :KVDIIVDATPGG T0384 101 :EWFDLIQTAEKNNCFIFEAA 2czcA 91 :IGAKNKPLYEKAGVKAIFQG T0384 156 :DL 2czcA 111 :GE T0384 160 :GQT 2czcA 113 :KAD T0384 164 :NVFSDRFAGGALMDLGIYPLYAAVRLFG 2czcA 125 :ANYEAALGKNYVRVVSCNTTGLVRTLSA T0384 194 :NDATYHAQQL 2czcA 158 :DYVYAVMIRR T0384 204 :DNSIDLNGDGILFYPDYQ 2czcA 212 :PTTLMHVHSVMVELKKPL T0384 273 :APH 2czcA 230 :TKD T0384 283 :AFAHMIQQ 2czcA 233 :DVIDIFEN Number of specific fragments extracted= 12 number of extra gaps= 0 total=1095 Number of alignments=72 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nvmB/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0384 read from 1nvmB/merged-good-all-a2m # 1nvmB read from 1nvmB/merged-good-all-a2m # found chain 1nvmB in training set Warning: unaligning (T0384)S206 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nvmB)P203 Warning: unaligning (T0384)I207 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nvmB)P203 T0384 1 :MLKLGVIGTGAISHHFIEAAHT 1nvmB 4 :KLKVAIIGSGNIGTDLMIKVLR T0384 23 :SGEYQLVAIYSRKLET 1nvmB 27 :AKYLEMGAMVGIDAAS T0384 39 :AATFASRYQNIQLFDQLEVFFK 1nvmB 44 :GLARAQRMGVTTTYAGVEGLIK T0384 61 :SSFDLVYIASPNSLHFAQAKAALSA 1nvmB 70 :ADIDFVFDATSASAHVQNEALLRQA T0384 86 :GKHVILEKPAVSQ 1nvmB 97 :GIRLIDLTPAAIG T0384 112 :NNCFIFEAARNYHEKAFTTIKNFLA 1nvmB 122 :LGKLNVNMVTCGGQATIPMVAAVSR T0384 141 :LG 1nvmB 147 :VA T0384 144 :DFNYAKYSSK 1nvmB 149 :KVHYAEIVAS T0384 154 :MPDLLAG 1nvmB 160 :SSKSAGP T0384 173 :G 1nvmB 167 :G T0384 175 :LMDLGIYPLYAAVRLFGKANDATYHAQQLDN 1nvmB 171 :NIDEFTETTSKAIEVIGGAAKGKAIIIMNPA T0384 208 :DLNGDGILF 1nvmB 204 :PLIMRDTVY T0384 245 :LTLNT 1nvmB 213 :VLSAA T0384 272 :QAPHTMTEEVAAFAHMIQQ 1nvmB 218 :ADQAAVAASVAEMVQAVQA T0384 293 :LNLYQTWLYDAGSVHELLYTMRQTAG 1nvmB 285 :PAYAGNLDIMTSAALATAERMAQSML Number of specific fragments extracted= 15 number of extra gaps= 1 total=1110 Number of alignments=73 # 1nvmB read from 1nvmB/merged-good-all-a2m # found chain 1nvmB in training set T0384 1 :MLKLGVIGTGAISHHFIEAAHTS 1nvmB 4 :KLKVAIIGSGNIGTDLMIKVLRN T0384 24 :GEYQLVAIYSRKLET 1nvmB 28 :KYLEMGAMVGIDAAS T0384 39 :AATFASRYQNIQLFDQLEVFFK 1nvmB 44 :GLARAQRMGVTTTYAGVEGLIK T0384 62 :SFDLVYIASPNSLHFAQAKAALSA 1nvmB 71 :DIDFVFDATSASAHVQNEALLRQA T0384 86 :GKHVILEKPAVSQ 1nvmB 97 :GIRLIDLTPAAIG T0384 105 :LIQTAEKNNC 1nvmB 115 :VVNLEEHLGK T0384 115 :FIFEAA 1nvmB 126 :NVNMVT T0384 123 :YHEKAFTTIKNFL 1nvmB 132 :CGGQATIPMVAAV T0384 138 :KQVLGADFNYAKYSSK 1nvmB 145 :SRVAKVHYAEIVASIS T0384 154 :MPDL 1nvmB 165 :GPGT T0384 173 :GALMDLGIYPLYAAVRLFGKANDATYHAQQLDN 1nvmB 169 :RANIDEFTETTSKAIEVIGGAAKGKAIIIMNPA T0384 206 :SIDLNGDGILFYPDY 1nvmB 204 :PLIMRDTVYVLSAAA T0384 225 :KAGKNITSN 1nvmB 248 :QFDVIPESA T0384 234 :LPCEIYTTDGTLTLNTIEHIR 1nvmB 264 :GRFSGLKTSVFLEVEGAAHYL T0384 295 :LYQTWLYD 1nvmB 285 :PAYAGNLD T0384 303 :AGSVHELLYTMRQTAGI 1nvmB 295 :TSAALATAERMAQSMLN Number of specific fragments extracted= 16 number of extra gaps= 0 total=1126 Number of alignments=74 # 1nvmB read from 1nvmB/merged-good-all-a2m # found chain 1nvmB in training set Warning: unaligning (T0384)D204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1nvmB)P203 Warning: unaligning (T0384)N205 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1nvmB)P203 T0384 1 :MLKLGVIGTGAISHHFIEAAHT 1nvmB 4 :KLKVAIIGSGNIGTDLMIKVLR T0384 23 :SGEYQLVAIYSRKL 1nvmB 27 :AKYLEMGAMVGIDA T0384 37 :E 1nvmB 43 :D T0384 39 :AATFASRYQNIQLFDQLEVFF 1nvmB 44 :GLARAQRMGVTTTYAGVEGLI T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSA 1nvmB 69 :FADIDFVFDATSASAHVQNEALLRQA T0384 86 :GKHVILEKPAVSQ 1nvmB 97 :GIRLIDLTPAAIG T0384 112 :NNCFIFEAARNYHEKAFT 1nvmB 122 :LGKLNVNMVTCGGQATIP T0384 131 :IKNFLAD 1nvmB 140 :MVAAVSR T0384 140 :VLGADFNYAKYSSKMPDL 1nvmB 147 :VAKVHYAEIVASISSKSA T0384 160 :GQTPNVFSDRF 1nvmB 165 :GPGTRANIDEF T0384 182 :PLYAAVRLFGKANDATYHAQQL 1nvmB 178 :TTSKAIEVIGGAAKGKAIIIMN T0384 206 :SIDLNGDGILFYPD 1nvmB 204 :PLIMRDTVYVLSAA T0384 272 :QAPHTMTEEVAAFAHMIQQ 1nvmB 218 :ADQAAVAASVAEMVQAVQA Number of specific fragments extracted= 13 number of extra gaps= 1 total=1139 Number of alignments=75 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2dbvO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0384/2dbvO/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0384/2dbvO/merged-good-all-a2m.gz for input Trying 2dbvO/merged-good-all-a2m Error: Couldn't open file 2dbvO/merged-good-all-a2m or 2dbvO/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f06A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1f06A expands to /projects/compbio/data/pdb/1f06.pdb.gz 1f06A:# T0384 read from 1f06A/merged-good-all-a2m # 1f06A read from 1f06A/merged-good-all-a2m # adding 1f06A to template set # found chain 1f06A in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLE 1f06A 4 :IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRAT T0384 46 :YQ 1f06A 40 :LD T0384 48 :NIQLFD 1f06A 43 :KTPVFD T0384 54 :QLEVFF 1f06A 51 :DVDKHA T0384 61 :SSFDLVYIASPN 1f06A 57 :DDVDVLFLCMGS T0384 73 :SLHFAQAKAALSA 1f06A 70 :TDIPEQAPKFAQF T0384 88 :HVILE 1f06A 83 :ACTVD T0384 95 :AVSQPQEW 1f06A 88 :TYDNHRDI T0384 103 :FDLIQTAEKNNCFIFEA 1f06A 100 :QVMNEAATAAGNVALVS T0384 174 :ALMDLGI 1f06A 117 :TGWDPGM T0384 183 :LYAAVRLFG 1f06A 124 :FSINRVYAA T0384 192 :KANDATYHAQQL 1f06A 134 :VLAEHQQHTFWG T0384 204 :DNSIDLNGDGILFYPDY 1f06A 239 :HTGMPHGGHVITTGDTG T0384 221 :QVHIKA 1f06A 257 :FNHTVE T0384 243 :GTLTLNT 1f06A 263 :YILKLDR T0384 298 :TWLYDAGSVHELLYTMRQTAGIRFE 1f06A 270 :NPDFTASSQIAFGRAAHRMKQQGQS Number of specific fragments extracted= 16 number of extra gaps= 0 total=1155 Number of alignments=76 # 1f06A read from 1f06A/merged-good-all-a2m # found chain 1f06A in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLE 1f06A 4 :IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRAT T0384 46 :YQNI 1f06A 40 :LDTK T0384 50 :QLFD 1f06A 45 :PVFD T0384 55 :LEVF 1f06A 49 :VADV T0384 59 :FKSSFDLVYIASP 1f06A 55 :HADDVDVLFLCMG T0384 72 :NSLHFAQAKAALSA 1f06A 69 :ATDIPEQAPKFAQF T0384 88 :HVILE 1f06A 83 :ACTVD T0384 95 :AVSQPQEW 1f06A 88 :TYDNHRDI T0384 103 :FDLIQTAEKNNCFIF 1f06A 100 :QVMNEAATAAGNVAL T0384 118 :EAARNYHEKAF 1f06A 117 :TGWDPGMFSIN T0384 129 :TTIKNFL 1f06A 129 :VYAAAVL T0384 139 :QV 1f06A 136 :AE T0384 143 :ADFNYAKYSSKMPDLLA 1f06A 138 :HQQHTFWGPGLSQGHSD T0384 188 :RLFG 1f06A 155 :ALRR T0384 192 :KANDATYHAQQLDN 1f06A 161 :GVQKAVQYTLPSED T0384 207 :IDLNGDGILFYPDYQ 1f06A 244 :HGGHVITTGDTGGFN T0384 222 :VHIK 1f06A 260 :TVEY T0384 244 :TLTLN 1f06A 264 :ILKLD T0384 297 :QTWLYDAGSVHELLYTMRQTAGIRFE 1f06A 269 :RNPDFTASSQIAFGRAAHRMKQQGQS Number of specific fragments extracted= 19 number of extra gaps= 0 total=1174 Number of alignments=77 # 1f06A read from 1f06A/merged-good-all-a2m # found chain 1f06A in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLE 1f06A 4 :IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRAT T0384 46 :YQN 1f06A 40 :LDT T0384 49 :IQLFD 1f06A 44 :TPVFD T0384 55 :LEVFF 1f06A 49 :VADVD T0384 60 :KSSFDLVYIASPN 1f06A 56 :ADDVDVLFLCMGS T0384 73 :SLHFAQAKAALSA 1f06A 70 :TDIPEQAPKFAQF T0384 88 :HVILEK 1f06A 83 :ACTVDT T0384 96 :VSQ 1f06A 89 :YDN T0384 99 :PQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLAD 1f06A 96 :PRHRQVMNEAATAAGNVALVSTGWDPGMFSINRVYAAAV T0384 140 :VLGADFNYAKYSSKMPDL 1f06A 135 :LAEHQQHTFWGPGLSQGH T0384 192 :KANDATYHAQQL 1f06A 161 :GVQKAVQYTLPS T0384 204 :DNSIDLNGDGILFY 1f06A 239 :HTGMPHGGHVITTG T0384 218 :PDYQVHIKAG 1f06A 254 :TGGFNHTVEY T0384 244 :TLTLNTI 1f06A 264 :ILKLDRN T0384 297 :QTWLYDAGSVHELLYTMRQTAGIR 1f06A 271 :PDFTASSQIAFGRAAHRMKQQGQS Number of specific fragments extracted= 15 number of extra gaps= 0 total=1189 Number of alignments=78 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gf2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0384/2gf2A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0384/2gf2A/merged-good-all-a2m.gz for input Trying 2gf2A/merged-good-all-a2m Error: Couldn't open file 2gf2A/merged-good-all-a2m or 2gf2A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cf2O/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1cf2O expands to /projects/compbio/data/pdb/1cf2.pdb.gz 1cf2O:# T0384 read from 1cf2O/merged-good-all-a2m # 1cf2O read from 1cf2O/merged-good-all-a2m # adding 1cf2O to template set # found chain 1cf2O in template set T0384 1 :MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKL 1cf2O 1 :MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRP T0384 37 :ETAATFASR 1cf2O 38 :FEARMALKK T0384 47 :Q 1cf2O 47 :G T0384 48 :NIQLFDQL 1cf2O 65 :GIEVAGTV T0384 56 :EVF 1cf2O 74 :DML T0384 61 :SSFDLVYIASPNSLHFAQAKAALSAGKHVILE 1cf2O 77 :DEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ T0384 95 :AVSQPQEW 1cf2O 109 :GGEKHEDI T0384 103 :FDLIQTA 1cf2O 123 :LSNYEES T0384 112 :NNCFIFEAARNYHEKAFTTIKNFLAD 1cf2O 130 :YGKDYTRVVSCNTTGLCRTLKPLHDS T0384 141 :L 1cf2O 156 :F T0384 144 :DFNYAKY 1cf2O 157 :GIKKVRA T0384 151 :SSKMPDLLAGQTP 1cf2O 167 :RRGADPAQVSKGP T0384 164 :NVFSDRFA 1cf2O 184 :IPNPPKLP T0384 180 :IYPLYAAVRLFG 1cf2O 192 :SHHGPDVKTVLD T0384 192 :K 1cf2O 205 :N T0384 196 :ATYHAQQLDNSIDLNGDGILFYPD 1cf2O 206 :IDTMAVIVPTTLMHQHNVMVEVEE T0384 239 :YTTDGTLTLNTI 1cf2O 286 :TVVDNEIYYMQA T0384 276 :TMTEEVAAFAHMIQQPDLNLY 1cf2O 303 :DIVPENVDAVRAILEMEEDKY T0384 308 :ELLYTMRQTAG 1cf2O 324 :KSINKTNKAMN Number of specific fragments extracted= 19 number of extra gaps= 0 total=1208 Number of alignments=79 # 1cf2O read from 1cf2O/merged-good-all-a2m # found chain 1cf2O in template set T0384 1 :MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKL 1cf2O 1 :MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRP T0384 37 :ETAATFASR 1cf2O 38 :FEARMALKK T0384 47 :QNI 1cf2O 47 :GYD T0384 50 :QLFDQLEVFFK 1cf2O 67 :EVAGTVDDMLD T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILE 1cf2O 78 :EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ T0384 95 :AVSQPQEW 1cf2O 109 :GGEKHEDI T0384 106 :IQTA 1cf2O 126 :YEES T0384 112 :NNCFIFEAARNYHEKAFTTIKNFL 1cf2O 130 :YGKDYTRVVSCNTTGLCRTLKPLH T0384 139 :QVLGADFNYAKYSSK 1cf2O 154 :DSFGIKKVRAVIVRR T0384 176 :MDLGIYPLYAAVRLFG 1cf2O 302 :SDIVPENVDAVRAILE T0384 192 :K 1cf2O 319 :E T0384 275 :HTMTEEVAAFAHMIQ 1cf2O 320 :EDKYKSINKTNKAMN Number of specific fragments extracted= 12 number of extra gaps= 0 total=1220 Number of alignments=80 # 1cf2O read from 1cf2O/merged-good-all-a2m # found chain 1cf2O in template set T0384 1 :MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKL 1cf2O 1 :MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRP T0384 37 :ETAATFASRY 1cf2O 38 :FEARMALKKG T0384 47 :QN 1cf2O 65 :GI T0384 50 :QLFDQLEVFF 1cf2O 67 :EVAGTVDDML T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILE 1cf2O 78 :EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ T0384 95 :AVSQPQEW 1cf2O 109 :GGEKHEDI T0384 105 :LIQTAEK 1cf2O 122 :SLSNYEE T0384 112 :NNCFIFEAARNYHEKAFTTIKNFLAD 1cf2O 130 :YGKDYTRVVSCNTTGLCRTLKPLHDS T0384 139 :QVLGADFNYAKYSSKMPDLLAGQTP 1cf2O 157 :GIKKVRAVIVRRGADPAQVSKGPIN T0384 185 :AAVR 1cf2O 197 :DVKT T0384 191 :GKANDATYHAQQLDNSIDLNGDGILFYPD 1cf2O 201 :VLDINIDTMAVIVPTTLMHQHNVMVEVEE T0384 271 :QQAPHTMTEEVAA 1cf2O 230 :TPTVDDIIDVFED T0384 289 :QQPDLNL 1cf2O 251 :AEDGLTS T0384 304 :GSVHELLYTM 1cf2O 258 :TAEIMEYAKE Number of specific fragments extracted= 14 number of extra gaps= 0 total=1234 Number of alignments=81 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gaeO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gaeO expands to /projects/compbio/data/pdb/1gae.pdb.gz 1gaeO:# T0384 read from 1gaeO/merged-good-all-a2m # 1gaeO read from 1gaeO/merged-good-all-a2m # adding 1gaeO to template set # found chain 1gaeO in template set T0384 1 :MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYS 1gaeO 0 :TIKVGINGFGRIGRIVFRAAQKRSDIEIVAIND T0384 34 :RK 1gaeO 34 :LD T0384 39 :AATFASRYQ 1gaeO 37 :ADYMAYMLK T0384 48 :NIQLFDQL 1gaeO 72 :RVTAERDP T0384 56 :EV 1gaeO 81 :NL T0384 58 :FFKSSFDLVYIASPNSLHFAQAKAALSAG 1gaeO 84 :WDEVGVDVVAEATGLFLTDETARKHITAG T0384 87 :KHVILEKPAVSQ 1gaeO 114 :KKVVMTGPSKDN T0384 113 :NCFIFEAARNY 1gaeO 138A:GQDIVSNASCT T0384 124 :HEKAFTTIKNFL 1gaeO 154 :LAPLAKVINDNF T0384 144 :DFNYAKYSSK 1gaeO 166 :GIIEGLMTTV T0384 154 :MPDLLAGQTP 1gaeO 179 :TATQKTVDGP T0384 164 :NVFSDRFAGG 1gaeO 193 :WRGGRGASQN T0384 180 :IYPLYAAVRLFGKAN 1gaeO 208 :TGAAKAVGKVLPELN T0384 195 :DATYHAQQLDNSIDLNGDGILFYPDY 1gaeO 224 :KLTGMAFRVPTPNVSVVDLTVRLEKA T0384 276 :TMTEEVAAFAHMIQQ 1gaeO 251 :TYEQIKAAVKAAAEG Number of specific fragments extracted= 15 number of extra gaps= 0 total=1249 Number of alignments=82 # 1gaeO read from 1gaeO/merged-good-all-a2m # found chain 1gaeO in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYS 1gaeO 1 :IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND T0384 34 :RKLE 1gaeO 34 :LDAD T0384 41 :TFASRYQNI 1gaeO 39 :YMAYMLKYD T0384 50 :QLFDQLEVF 1gaeO 74 :TAERDPANL T0384 59 :FKS 1gaeO 84 :WDE T0384 62 :SFDLVYIASPNSLHFAQAKAALSAG 1gaeO 88 :GVDVVAEATGLFLTDETARKHITAG T0384 87 :KHVILEKPAVSQ 1gaeO 114 :KKVVMTGPSKDN T0384 113 :NC 1gaeO 138A:GQ T0384 115 :FIFEA 1gaeO 143 :IVSNA T0384 122 :NYHEKAFTTIKNFL 1gaeO 148 :SCTTNCLAPLAKVI T0384 138 :KQVLGADFNYAKYSSKMPDLLAGQT 1gaeO 162 :NDNFGIIEGLMTTVHATTATQKTVD T0384 163 :PNVFSDRFAGGAL 1gaeO 192 :DWRGGRGASQNII T0384 180 :IYPLYAAVRLFGKAN 1gaeO 208 :TGAAKAVGKVLPELN T0384 195 :DATYHAQQLDNSIDLNGDGILFYPDY 1gaeO 224 :KLTGMAFRVPTPNVSVVDLTVRLEKA T0384 275 :HTMTEEVAAFAHMIQQPDLNLY 1gaeO 250 :ATYEQIKAAVKAAAEGEMKGVL Number of specific fragments extracted= 15 number of extra gaps= 0 total=1264 Number of alignments=83 # 1gaeO read from 1gaeO/merged-good-all-a2m # found chain 1gaeO in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYS 1gaeO 1 :IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND T0384 34 :RKLE 1gaeO 34 :LDAD T0384 41 :TFASRY 1gaeO 39 :YMAYML T0384 49 :IQLFDQLEVFF 1gaeO 73 :VTAERDPANLK T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGK 1gaeO 86 :EVGVDVVAEATGLFLTDETARKHITAGA T0384 88 :HVILEKPAVSQ 1gaeO 115 :KVVMTGPSKDN T0384 113 :NCFIFEAARNYHEKAFTTIKNFLAD 1gaeO 138A:GQDIVSNASCTTNCLAPLAKVINDN T0384 142 :GADFNYAKYSSKMPDLLAGQTP 1gaeO 166 :GIIEGLMTTVHATTATQKTVDG T0384 164 :NVFSDRFAGG 1gaeO 193 :WRGGRGASQN T0384 180 :IYPLYAAVRLFGKANDATYHAQQL 1gaeO 208 :TGAAKAVGKVLPELNGKLTGMAFR T0384 204 :DNSIDLNGDGILFYPDYQ 1gaeO 233 :PTPNVSVVDLTVRLEKAA T0384 276 :TMTEEVAAFAHMIQQP 1gaeO 251 :TYEQIKAAVKAAAEGE Number of specific fragments extracted= 12 number of extra gaps= 0 total=1276 Number of alignments=84 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rydA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0384/1rydA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0384/1rydA/merged-good-all-a2m.gz for input Trying 1rydA/merged-good-all-a2m Error: Couldn't open file 1rydA/merged-good-all-a2m or 1rydA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gcuA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gcuA expands to /projects/compbio/data/pdb/1gcu.pdb.gz 1gcuA:# T0384 read from 1gcuA/merged-good-all-a2m # 1gcuA read from 1gcuA/merged-good-all-a2m # adding 1gcuA to template set # found chain 1gcuA in template set Warning: unaligning (T0384)G318 because last residue in template chain is (1gcuA)H292 T0384 2 :LKLGVIGTGAISHHFIEAAHT 1gcuA 9 :FGVVVVGVGRAGSVRLRDLKD T0384 23 :SGEYQLVAIYSRKL 1gcuA 33 :AAFLNLIGFVSRRE T0384 46 :YQ 1gcuA 47 :LG T0384 48 :NI 1gcuA 52 :EV T0384 54 :QL 1gcuA 57 :SL T0384 56 :EVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLA 1gcuA 60 :DALRSQEIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRREVL T0384 138 :KQ 1gcuA 141 :GK T0384 144 :DFNYAKYSSKMPDLLAG 1gcuA 143 :ELLKGSLRFTASPLEEE T0384 169 :RF 1gcuA 160 :RF T0384 173 :GALMDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDY 1gcuA 162 :GFPAFSGISRLTWLVSLFGELSLISATLEERKEDQYMKMTVQLETQNK T0384 221 :QVHIKAGKNITSN 1gcuA 211 :LLSWIEEKGPGLK T0384 234 :LPCEIYTTDGTL 1gcuA 226 :RYVNFQFTSGSL T0384 265 :QVQLPIQQAPHTMTEEVAAFAHMIQQP 1gcuA 238 :EEVPSVGVNKNIFLKDQDIFVQKLLDQ T0384 292 :DLNLYQTWLYDAGSVHELLYTMRQTA 1gcuA 266 :SAEDLAAEKKRIMHCLGLASDIQKLC Number of specific fragments extracted= 14 number of extra gaps= 0 total=1290 Number of alignments=85 # 1gcuA read from 1gcuA/merged-good-all-a2m # found chain 1gcuA in template set Warning: unaligning (T0384)G318 because last residue in template chain is (1gcuA)H292 T0384 2 :LKLGVIGTGAISHHFIEAA 1gcuA 9 :FGVVVVGVGRAGSVRLRDL T0384 21 :HT 1gcuA 33 :AA T0384 25 :EYQLVAIYSRK 1gcuA 35 :FLNLIGFVSRR T0384 47 :QNI 1gcuA 46 :ELG T0384 51 :LFDQLEVFFKS 1gcuA 54 :RQISLEDALRS T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFL 1gcuA 66 :EIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRREV T0384 137 :DKQV 1gcuA 140 :LGKE T0384 143 :ADFNYAKYSSKMPDLLAG 1gcuA 144 :LLKGSLRFTASPLEEERF T0384 173 :GALMDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQ 1gcuA 162 :GFPAFSGISRLTWLVSLFGELSLISATLEERKEDQYMKMTVQLETQNKG T0384 222 :VHIKAGKNITSN 1gcuA 212 :LSWIEEKGPGLK T0384 234 :LPCEIYTTDGTL 1gcuA 226 :RYVNFQFTSGSL T0384 265 :QVQLPIQQAPHTMTEEVAAFAHMIQQPD 1gcuA 238 :EEVPSVGVNKNIFLKDQDIFVQKLLDQV T0384 293 :LNLYQTWLYDAGSVHELLYTMRQTA 1gcuA 267 :AEDLAAEKKRIMHCLGLASDIQKLC Number of specific fragments extracted= 13 number of extra gaps= 0 total=1303 Number of alignments=86 # 1gcuA read from 1gcuA/merged-good-all-a2m # found chain 1gcuA in template set T0384 2 :LKLGVIGTGAISHHFIEAAHT 1gcuA 9 :FGVVVVGVGRAGSVRLRDLKD T0384 23 :SGEYQLVAIYSRKL 1gcuA 33 :AAFLNLIGFVSRRE T0384 46 :Y 1gcuA 47 :L T0384 49 :IQLF 1gcuA 53 :VRQI T0384 54 :QLEVFF 1gcuA 57 :SLEDAL T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLAD 1gcuA 64 :SQEIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRREVLG T0384 141 :LGADFNYAKYSSKMPD 1gcuA 142 :KELLKGSLRFTASPLE T0384 162 :TPNVFSDRFA 1gcuA 158 :EERFGFPAFS T0384 179 :GIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNIT 1gcuA 168 :GISRLTWLVSLFGELSLISATLEERKEDQYMKMTVQLETQNKGLLSWIEEKGP T0384 232 :SNLPCEIYTTDGTL 1gcuA 224 :RNRYVNFQFTSGSL T0384 265 :QVQLPIQQAPHTMTEEVAAFAHMIQQP 1gcuA 238 :EEVPSVGVNKNIFLKDQDIFVQKLLDQ T0384 296 :YQTWLYDAGSVHELLYTM 1gcuA 265 :VSAEDLAAEKKRIMHCLG Number of specific fragments extracted= 12 number of extra gaps= 0 total=1315 Number of alignments=87 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2h78A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2h78A expands to Error: no filename for 2h78A 2h78A expands to Error: no filename for 2h78A 2h78A expands to Error: no filename for 2h78A # T0384 read from 2h78A/merged-good-all-a2m # 2h78A read from 2h78A/merged-good-all-a2m # adding 2h78A to template set Error: can't find template for 2h78A or 2h78A, so skipping it. # 2h78A read from 2h78A/merged-good-all-a2m # adding 2h78A to template set Error: can't find template for 2h78A or 2h78A, so skipping it. # 2h78A read from 2h78A/merged-good-all-a2m # adding 2h78A to template set Error: can't find template for 2h78A or 2h78A, so skipping it. # Reading fragments from alignment file # Attempting to read fragment alignments from file 2h63A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0384/2h63A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0384/2h63A/merged-good-all-a2m.gz for input Trying 2h63A/merged-good-all-a2m Error: Couldn't open file 2h63A/merged-good-all-a2m or 2h63A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dapA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1dapA expands to /projects/compbio/data/pdb/1dap.pdb.gz 1dapA:# T0384 read from 1dapA/merged-good-all-a2m # 1dapA read from 1dapA/merged-good-all-a2m # adding 1dapA to template set # found chain 1dapA in template set Warning: unaligning (T0384)S152 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1dapA)P146 Warning: unaligning (T0384)K153 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1dapA)P146 T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLE 1dapA 4 :IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRAT T0384 46 :YQ 1dapA 40 :LD T0384 48 :NIQLFD 1dapA 43 :KTPVFD T0384 54 :QLEVFF 1dapA 51 :DVDKHA T0384 61 :SSFDLVYIASPN 1dapA 57 :DDVDVLFLCMGS T0384 73 :SLHFAQAKAALSA 1dapA 70 :TDIPEQAPKFAQF T0384 88 :HVILE 1dapA 83 :ACTVD T0384 95 :AVSQPQEW 1dapA 88 :TYDNHRDI T0384 103 :FDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLAD 1dapA 100 :QVMNEAATAAGNVALVSTGWDPGMFSINRVYAAAV T0384 141 :LG 1dapA 135 :LA T0384 144 :DFNYAKYS 1dapA 137 :EHQQHTFW T0384 154 :MPDL 1dapA 147 :GLSQ T0384 169 :R 1dapA 151 :G T0384 185 :AAVRLFG 1dapA 152 :HSDALRR T0384 192 :KANDATYHAQQL 1dapA 161 :GVQKAVQYTLPS T0384 204 :DNSIDLNGDGILFYPDY 1dapA 239 :HTGMPHGGHVITTGDTG T0384 221 :QVHIKA 1dapA 257 :FNHTVE T0384 243 :GTLTLNT 1dapA 263 :YILKLDR T0384 298 :TWLYDAGSVHELLYTMRQTAGIRF 1dapA 270 :NPDFTASSQIAFGRAAHRMKQQGQ Number of specific fragments extracted= 19 number of extra gaps= 1 total=1334 Number of alignments=88 # 1dapA read from 1dapA/merged-good-all-a2m # found chain 1dapA in template set Warning: unaligning (T0384)Y150 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1dapA)P146 Warning: unaligning (T0384)S151 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1dapA)P146 T0384 1 :M 1dapA 1 :M T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLE 1dapA 4 :IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRAT T0384 46 :YQNI 1dapA 40 :LDTK T0384 50 :QLFD 1dapA 45 :PVFD T0384 55 :LEVF 1dapA 49 :VADV T0384 59 :FKSSFDLVYIASP 1dapA 55 :HADDVDVLFLCMG T0384 72 :NSLHFAQAKAALSA 1dapA 69 :ATDIPEQAPKFAQF T0384 88 :HVILE 1dapA 83 :ACTVD T0384 95 :AVSQPQEW 1dapA 88 :TYDNHRDI T0384 103 :FDLIQTAEKNNCFIFEA 1dapA 100 :QVMNEAATAAGNVALVS T0384 120 :ARNYHEKAF 1dapA 119 :WDPGMFSIN T0384 129 :TTIKNFL 1dapA 129 :VYAAAVL T0384 138 :KQ 1dapA 136 :AE T0384 143 :ADFNYAK 1dapA 138 :HQQHTFW T0384 152 :SKMPDLLAG 1dapA 147 :GLSQGHSDA T0384 189 :LFG 1dapA 156 :LRR T0384 192 :KANDATYHAQQLDN 1dapA 161 :GVQKAVQYTLPSED T0384 207 :IDLNGDGILFY 1dapA 242 :MPHGGHVITTG T0384 218 :PDYQ 1dapA 255 :GGFN T0384 222 :VHIK 1dapA 260 :TVEY T0384 244 :TLTLN 1dapA 264 :ILKLD T0384 297 :QTWLYDAGSVHELLYTMRQTAGIRF 1dapA 269 :RNPDFTASSQIAFGRAAHRMKQQGQ Number of specific fragments extracted= 22 number of extra gaps= 1 total=1356 Number of alignments=89 # 1dapA read from 1dapA/merged-good-all-a2m # found chain 1dapA in template set Warning: unaligning (T0384)R121 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1dapA)P146 T0384 1 :MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLE 1dapA 3 :NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRAT T0384 46 :YQN 1dapA 40 :LDT T0384 49 :IQLFD 1dapA 44 :TPVFD T0384 55 :LEVFF 1dapA 49 :VADVD T0384 60 :KSSFDLVYIASPN 1dapA 56 :ADDVDVLFLCMGS T0384 73 :SLHFAQAKAALSA 1dapA 70 :TDIPEQAPKFAQF T0384 88 :HVILEK 1dapA 83 :ACTVDT T0384 96 :VSQ 1dapA 89 :YDN T0384 99 :PQEWFDLIQTAEKNNCFIFE 1dapA 96 :PRHRQVMNEAATAAGNVALV T0384 122 :NYHEKAFTTIK 1dapA 147 :GLSQGHSDALR T0384 133 :NFLADKQVLGA 1dapA 177 :EKARRGEAGDL T0384 144 :DFNYAKYSSKMPDL 1dapA 193 :HKRQCFVVADAADH T0384 164 :NVFSDRFAG 1dapA 213 :IRTMPDYFV T0384 191 :GK 1dapA 222 :GY T0384 195 :DATYHAQQ 1dapA 224 :EVEVNFID T0384 204 :DNSIDLNGDGILFY 1dapA 239 :HTGMPHGGHVITTG T0384 218 :PDYQVHIKAG 1dapA 254 :TGGFNHTVEY T0384 244 :TLTLNTI 1dapA 264 :ILKLDRN T0384 297 :QTWLYDAGSVHELLYTMRQTAGI 1dapA 271 :PDFTASSQIAFGRAAHRMKQQGQ Number of specific fragments extracted= 19 number of extra gaps= 1 total=1375 Number of alignments=90 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1y81A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0384 read from 1y81A/merged-good-all-a2m # 1y81A read from 1y81A/merged-good-all-a2m # found chain 1y81A in training set T0384 3 :KLGVIGTG 1y81A 8 :KIALVGAS T0384 11 :AISHHFIEAAHTS 1y81A 20 :KYGNIILKDLLSK T0384 25 :EYQLVAI 1y81A 33 :GFEVLPV T0384 33 :SRK 1y81A 40 :NPN T0384 46 :YQ 1y81A 43 :YD T0384 48 :NIQLFDQLEVFF 1y81A 48 :GLKCYRSVRELP T0384 61 :SSFDLVYIASPNSLHFAQAKAALSAG 1y81A 60 :KDVDVIVFVVPPKVGLQVAKEAVEAG T0384 87 :KHVILE 1y81A 87 :KKLWFQ T0384 94 :PAVSQPQ 1y81A 93 :PGAESEE T0384 105 :LIQTAEKNNCFIF 1y81A 100 :IRRFLEKAGVEYS Number of specific fragments extracted= 10 number of extra gaps= 0 total=1385 Number of alignments=91 # 1y81A read from 1y81A/merged-good-all-a2m # found chain 1y81A in training set T0384 3 :KLGVIGTG 1y81A 8 :KIALVGAS T0384 11 :AISHHFIEAAHTS 1y81A 20 :KYGNIILKDLLSK T0384 25 :EYQLVAI 1y81A 33 :GFEVLPV T0384 46 :YQNI 1y81A 40 :NPNY T0384 50 :QLFDQLEVF 1y81A 50 :KCYRSVREL T0384 60 :K 1y81A 60 :K T0384 62 :SFDLVYIASPNSLHFAQAKAALSAG 1y81A 61 :DVDVIVFVVPPKVGLQVAKEAVEAG T0384 87 :KHVILE 1y81A 87 :KKLWFQ T0384 95 :AVSQPQEW 1y81A 93 :PGAESEEI T0384 106 :IQTAEKNNCFIF 1y81A 101 :RRFLEKAGVEYS Number of specific fragments extracted= 10 number of extra gaps= 0 total=1395 Number of alignments=92 # 1y81A read from 1y81A/merged-good-all-a2m # found chain 1y81A in training set T0384 3 :KLGVIGTG 1y81A 8 :KIALVGAS T0384 11 :AISHHFIEAAHT 1y81A 20 :KYGNIILKDLLS T0384 24 :GEYQLVAIY 1y81A 32 :KGFEVLPVN T0384 34 :RK 1y81A 41 :PN T0384 49 :IQLFDQLEVF 1y81A 49 :LKCYRSVREL T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQ 1y81A 59 :PKDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWFQPGAESEE T0384 105 :LIQTAEKNNCFIF 1y81A 100 :IRRFLEKAGVEYS Number of specific fragments extracted= 7 number of extra gaps= 0 total=1402 Number of alignments=93 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1j5pA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1j5pA expands to /projects/compbio/data/pdb/1j5p.pdb.gz 1j5pA:# T0384 read from 1j5pA/merged-good-all-a2m # 1j5pA read from 1j5pA/merged-good-all-a2m # adding 1j5pA to template set # found chain 1j5pA in template set Warning: unaligning (T0384)H261 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1j5pA)S220 Warning: unaligning (T0384)I270 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1j5pA)S220 T0384 2 :LKLGVIGTGAISHHFIEAA 1j5pA 1 :MTVLIIGMGNIGKKLVELG T0384 25 :EYQLVAIYSRK 1j5pA 20 :NFEKIYAYDRI T0384 36 :LE 1j5pA 32 :KD T0384 46 :YQNIQLFDQLEVF 1j5pA 34 :IPGVVRLDEFQVP T0384 61 :SSFDLVYIASPNSLHFAQAKAALSAGKHVIL 1j5pA 47 :SDVSTVVECASPEAVKEYSLQILKNPVNYII T0384 92 :EKPAVSQPQEWFDLIQTAEKNNCFI 1j5pA 79 :STSAFADEVFRERFFSELKNSPARV T0384 119 :AARNYHEKAFTTIKNF 1j5pA 104 :FFPSGAIGGLDVLSSI T0384 141 :LG 1j5pA 120 :KD T0384 144 :DFNYAKYSSKMPDLLAGQT 1j5pA 122 :FVKNVRIETIKPPKSLGLD T0384 163 :PNV 1j5pA 160 :PRN T0384 180 :IYPLYAAVRLFG 1j5pA 163 :INVASTIGLIVG T0384 192 :KANDATYHA 1j5pA 176 :EKVKVTIVA T0384 204 :DNSIDLNGD 1j5pA 185 :DPAMDHNIH T0384 244 :TLTLNTIEHIRSAIFTD 1j5pA 194 :IVRISSAIGNYEFKIEN T0384 271 :Q 1j5pA 221 :M T0384 276 :TMTEEVAAFAHMIQQPDLN 1j5pA 222 :LTVYSILRTLRNLESKIIF Number of specific fragments extracted= 16 number of extra gaps= 0 total=1418 Number of alignments=94 # 1j5pA read from 1j5pA/merged-good-all-a2m # found chain 1j5pA in template set Warning: unaligning (T0384)A273 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1j5pA)S220 Warning: unaligning (T0384)M277 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1j5pA)S220 T0384 2 :LKLGVIGTGAISHHFIEAA 1j5pA 1 :MTVLIIGMGNIGKKLVELG T0384 25 :EY 1j5pA 20 :NF T0384 27 :QLV 1j5pA 23 :KIY T0384 31 :IYSR 1j5pA 26 :AYDR T0384 49 :I 1j5pA 31 :S T0384 50 :QLFD 1j5pA 44 :QVPS T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILEK 1j5pA 48 :DVSTVVECASPEAVKEYSLQILKNPVNYIIIS T0384 94 :PAVSQPQEWFDLIQTAEKNNCFIF 1j5pA 81 :SAFADEVFRERFFSELKNSPARVF T0384 120 :ARNYHEKAFTTIKNF 1j5pA 105 :FPSGAIGGLDVLSSI T0384 138 :KQV 1j5pA 120 :KDF T0384 143 :ADFNYAKYSSKMPDLLAGQTPNVFSDR 1j5pA 123 :VKNVRIETIKPPKSLGLDLKGKTVVFE T0384 173 :GALMDLG 1j5pA 150 :GSVEEAS T0384 180 :IYPLYAAVRLFG 1j5pA 163 :INVASTIGLIVG T0384 193 :ANDATYHAQQLDNSIDLNGDGILFY 1j5pA 175 :FEKVKVTIVADPAMDHNIHIVRISS T0384 262 :QGNQVQLPIQQ 1j5pA 200 :AIGNYEFKIEN T0384 278 :TEEVAAFAHMI 1j5pA 221 :MLTVYSILRTL T0384 315 :QTAGIRFEA 1j5pA 232 :RNLESKIIF Number of specific fragments extracted= 17 number of extra gaps= 0 total=1435 Number of alignments=95 # 1j5pA read from 1j5pA/merged-good-all-a2m # found chain 1j5pA in template set Warning: unaligning (T0384)Q265 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1j5pA)S220 Warning: unaligning (T0384)P274 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1j5pA)S220 T0384 2 :LKLGVIGTGAISHHFIEA 1j5pA 1 :MTVLIIGMGNIGKKLVEL T0384 24 :GEYQLVAIYSRKL 1j5pA 19 :GNFEKIYAYDRIS T0384 49 :IQLFDQLEVFF 1j5pA 34 :IPGVVRLDEFQ T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGKHVIL 1j5pA 46 :PSDVSTVVECASPEAVKEYSLQILKNPVNYII T0384 94 :PAVSQPQEWFDLIQTA 1j5pA 81 :SAFADEVFRERFFSEL T0384 112 :NNCFIFEAARNYHEKAFTTIKNF 1j5pA 97 :KNSPARVFFPSGAIGGLDVLSSI T0384 140 :VLGADFNYAKYSSKMPDLLAGQTP 1j5pA 120 :KDFVKNVRIETIKPPKSLGLDLKG T0384 168 :DR 1j5pA 161 :RN T0384 180 :IYPLYAAVRLFGKANDATYHAQQLDNSIDLN 1j5pA 163 :INVASTIGLIVGFEKVKVTIVADPAMDHNIH T0384 244 :TLTLNTIEHIRSAIFTD 1j5pA 194 :IVRISSAIGNYEFKIEN T0384 275 :HTMTEEVAAFAHMIQQPDLN 1j5pA 221 :MLTVYSILRTLRNLESKIIF Number of specific fragments extracted= 11 number of extra gaps= 0 total=1446 Number of alignments=96 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1oi7A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0384 read from 1oi7A/merged-good-all-a2m # 1oi7A read from 1oi7A/merged-good-all-a2m # found chain 1oi7A in training set Warning: unaligning (T0384)Q271 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1oi7A)V255 T0384 2 :LKLGVIG 1oi7A 8 :TRVLVQG T0384 9 :TGAISHHFIEAAHTS 1oi7A 16 :TGREGQFHTKQMLTY T0384 25 :EYQLVAIYSR 1oi7A 31 :GTKIVAGVTP T0384 47 :Q 1oi7A 41 :G T0384 48 :NIQLFDQL 1oi7A 49 :GVPVYDTV T0384 56 :EVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIF 1oi7A 58 :EAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLI T0384 118 :EAARNYHEKAFTTIKNFLAD 1oi7A 147 :VGIISRSGTLTYEAAAALSQ T0384 141 :LGADFNYAKYSSKMPDL 1oi7A 167 :AGLGTTTTVGIGGDPVI T0384 179 :GIYPLYAAVRLFG 1oi7A 184 :GTTFKDLLPLFNE T0384 192 :KANDATYHAQQLDN 1oi7A 199 :ETEAVVLIGEIGGS T0384 272 :QAP 1oi7A 256 :GTP T0384 278 :TE 1oi7A 259 :ES T0384 284 :FAHMIQQPDLNLYQ 1oi7A 261 :KLRAFAEAGIPVAD T0384 299 :WLY 1oi7A 275 :TID T0384 308 :ELLYTMRQTA 1oi7A 278 :EIVELVKKAL Number of specific fragments extracted= 15 number of extra gaps= 0 total=1461 Number of alignments=97 # 1oi7A read from 1oi7A/merged-good-all-a2m # found chain 1oi7A in training set Warning: unaligning (T0384)E118 because of BadResidue code BAD_PEPTIDE in next template residue (1oi7A)G121 Warning: unaligning (T0384)A119 because of BadResidue code BAD_PEPTIDE at template residue (1oi7A)G121 T0384 2 :LKLGVIG 1oi7A 8 :TRVLVQG T0384 9 :TGAISHHFIEAAHTS 1oi7A 16 :TGREGQFHTKQMLTY T0384 25 :EYQLVAIYS 1oi7A 31 :GTKIVAGVT T0384 47 :QNI 1oi7A 40 :PGK T0384 50 :QLFDQLEVFFKS 1oi7A 51 :PVYDTVKEAVAH T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIF 1oi7A 64 :EVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLI T0384 123 :YHEKAFTTIKNFLADKQV 1oi7A 152 :RSGTLTYEAAAALSQAGL T0384 142 :GADFNYAKYSSK 1oi7A 170 :GTTTTVGIGGDP T0384 180 :IYPLYAAVRLFG 1oi7A 185 :TTFKDLLPLFNE T0384 192 :KANDATYHAQQLDN 1oi7A 199 :ETEAVVLIGEIGGS T0384 275 :HTMTEEVAAFAHM 1oi7A 256 :GTPESKLRAFAEA T0384 295 :LYQTWLYDAGSVHE 1oi7A 271 :PVADTIDEIVELVK Number of specific fragments extracted= 12 number of extra gaps= 1 total=1473 Number of alignments=98 # 1oi7A read from 1oi7A/merged-good-all-a2m # found chain 1oi7A in training set Warning: unaligning (T0384)L203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1oi7A)V255 Warning: unaligning (T0384)Q271 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1oi7A)V255 T0384 2 :LKLGVIGT 1oi7A 8 :TRVLVQGI T0384 10 :GAISHHFIEAAHTS 1oi7A 17 :GREGQFHTKQMLTY T0384 25 :EYQLVAIYSRK 1oi7A 31 :GTKIVAGVTPG T0384 45 :RYQN 1oi7A 42 :KGGM T0384 49 :IQLFDQLEVFF 1oi7A 50 :VPVYDTVKEAV T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIF 1oi7A 62 :HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLI T0384 118 :EAARNYHEKAFTTIKNFL 1oi7A 147 :VGIISRSGTLTYEAAAAL T0384 136 :ADKQ 1oi7A 166 :QAGL T0384 142 :GADFNYAKYSSKMPDLLAGQ 1oi7A 170 :GTTTTVGIGGDPVIGTTFKD T0384 164 :NVFSDRFAGGALMDLG 1oi7A 192 :PLFNEDPETEAVVLIG T0384 180 :IYPLYAAVRLFGK 1oi7A 212 :SDEEEAAAWVKDH T0384 193 :ANDATYHAQQ 1oi7A 226 :KKPVVGFIGG T0384 272 :QAPHTMTEEVAAF 1oi7A 256 :GTPESKLRAFAEA T0384 291 :PDLNLYQTWLYDAGSVHE 1oi7A 269 :GIPVADTIDEIVELVKKA Number of specific fragments extracted= 14 number of extra gaps= 0 total=1487 Number of alignments=99 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ys4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ys4A expands to /projects/compbio/data/pdb/1ys4.pdb.gz 1ys4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0384 read from 1ys4A/merged-good-all-a2m # 1ys4A read from 1ys4A/merged-good-all-a2m # adding 1ys4A to template set # found chain 1ys4A in template set Warning: unaligning (T0384)V96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ys4A)I127 Warning: unaligning (T0384)S97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ys4A)I127 T0384 1 :MLKLGVIG 1ys4A 8 :KIKVGVLG T0384 9 :TGAISHHFIEAAHTSGEYQLVAIYSRK 1ys4A 17 :TGSVGQRFVQLLADHPMFELTALAASE T0384 37 :E 1ys4A 44 :R T0384 45 :RYQ 1ys4A 45 :SAG T0384 48 :NIQLFDQL 1ys4A 70 :VVIPTDPK T0384 56 :EVF 1ys4A 79 :EEF T0384 61 :SSFDLVYIASPNSLHFAQAKAALSAGKHVILE 1ys4A 82 :EDVDIVFSALPSDLAKKFEPEFAKEGKLIFSN T0384 93 :KPA 1ys4A 123 :VPL T0384 104 :DLIQTAEKN 1ys4A 136 :ELIEIQREK T0384 113 :NCFIFEAARNYHEKAFTTIKNFLAD 1ys4A 148 :DGAIITNPNCSTICAVITLKPIMDK T0384 141 :LGADFNYAKYSSKMPDLLAGQT 1ys4A 173 :FGLEAVFIATMQAVSGAGYNGV Number of specific fragments extracted= 11 number of extra gaps= 1 total=1498 Number of alignments=100 # 1ys4A read from 1ys4A/merged-good-all-a2m # found chain 1ys4A in template set Warning: unaligning (T0384)V96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ys4A)I127 T0384 1 :MLKLGVIG 1ys4A 8 :KIKVGVLG T0384 9 :TGAISHHFIEAAHTSGEYQLVAIYS 1ys4A 17 :TGSVGQRFVQLLADHPMFELTALAA T0384 35 :KLET 1ys4A 42 :SERS T0384 39 :AATF 1ys4A 50 :YKDA T0384 46 :YQN 1ys4A 54 :CYW T0384 52 :FDQ 1ys4A 72 :IPT T0384 59 :FK 1ys4A 81 :FE T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILE 1ys4A 83 :DVDIVFSALPSDLAKKFEPEFAKEGKLIFSN T0384 93 :KPA 1ys4A 123 :VPL T0384 105 :LIQTAEKN 1ys4A 137 :LIEIQREK T0384 113 :NCFIFEAARNYHEKAFTTIKNFL 1ys4A 148 :DGAIITNPNCSTICAVITLKPIM T0384 139 :QVLGADFNYAKYSSKMPDLLAGQT 1ys4A 171 :DKFGLEAVFIATMQAVSGAGYNGV T0384 168 :DRFAGGA 1ys4A 201 :DNLIPFI T0384 176 :MDLGIYPLYAAVRLFG 1ys4A 208 :KNEEEKMQTESLKLLG T0384 202 :QLDNS 1ys4A 224 :TLKDG T0384 207 :IDLNGDGILFY 1ys4A 248 :DGHTESIFVKT T0384 295 :LYQTWLYDAGSVHE 1ys4A 259 :KEGAEPEEIKEVMD Number of specific fragments extracted= 17 number of extra gaps= 1 total=1515 Number of alignments=101 # 1ys4A read from 1ys4A/merged-good-all-a2m # found chain 1ys4A in template set Warning: unaligning (T0384)V96 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ys4A)I127 Warning: unaligning (T0384)S97 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ys4A)I127 T0384 1 :MLKLGVIGT 1ys4A 8 :KIKVGVLGA T0384 10 :GAISHHFIEAAHTSGEYQLVAIYSRK 1ys4A 18 :GSVGQRFVQLLADHPMFELTALAASE T0384 41 :TFASRY 1ys4A 49 :KYKDAC T0384 49 :IQLFDQ 1ys4A 69 :MVVIPT T0384 55 :LEVF 1ys4A 78 :HEEF T0384 61 :SSFDLVYIASPNSLHFAQAKAALSAGKHVIL 1ys4A 82 :EDVDIVFSALPSDLAKKFEPEFAKEGKLIFS T0384 93 :KPA 1ys4A 123 :VPL T0384 104 :DLIQTAEKN 1ys4A 136 :ELIEIQREK T0384 113 :NCFIFEAARNYHEKAFTTIKNFLAD 1ys4A 148 :DGAIITNPNCSTICAVITLKPIMDK T0384 142 :GADFNYAKYSSKMPDLLAGQTP 1ys4A 174 :GLEAVFIATMQAVSGAGYNGVP T0384 182 :PLYAAVRLFG 1ys4A 214 :MQTESLKLLG T0384 192 :KANDATYHAQQLDNSIDLNGDGILFYPDY 1ys4A 233 :ANFKISASCNRVAVIDGHTESIFVKTKEG Number of specific fragments extracted= 12 number of extra gaps= 1 total=1527 Number of alignments=102 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ahrA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2ahrA expands to /projects/compbio/data/pdb/2ahr.pdb.gz 2ahrA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0384 read from 2ahrA/merged-good-all-a2m # 2ahrA read from 2ahrA/merged-good-all-a2m # adding 2ahrA to template set # found chain 2ahrA in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTS 2ahrA 1 :MKIGIIGVGKMASAIIKGLKQT T0384 25 :EYQLV 2ahrA 23 :PHELI T0384 31 :IYSRKLETAATFASRYQ 2ahrA 28 :ISGSSLERSKEIAEQLA T0384 49 :IQLFDQL 2ahrA 45 :LPYAMSH T0384 56 :EVF 2ahrA 53 :DLI T0384 61 :SSFDLVYIASPNSLHFAQA 2ahrA 56 :DQVDLVILGIKPQLFETVL T0384 87 :KHVI 2ahrA 81 :QPII T0384 92 :EKPAVSQPQEWFDLI 2ahrA 85 :SMAAGISLQRLATFV T0384 113 :NCFIFE 2ahrA 102 :DLPLLR T0384 119 :AARNYHEKAFTTIKNFLAD 2ahrA 125 :GNALVSQELQARVRDLTDS T0384 141 :LG 2ahrA 144 :FG T0384 144 :D 2ahrA 146 :S T0384 150 :YSSKMPDL 2ahrA 147 :TFDISEKD T0384 183 :LYA 2ahrA 155 :FDT T0384 276 :TMTEEVAAFAHMIQQPDLNLY 2ahrA 168 :YIYLFIEALAKAGVKNGIPKA T0384 299 :WLYDAG 2ahrA 189 :KALEIV Number of specific fragments extracted= 16 number of extra gaps= 0 total=1543 Number of alignments=103 # 2ahrA read from 2ahrA/merged-good-all-a2m # found chain 2ahrA in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTS 2ahrA 1 :MKIGIIGVGKMASAIIKGLKQT T0384 25 :EYQLV 2ahrA 23 :PHELI T0384 31 :IYSRKLETAATFASRYQNI 2ahrA 28 :ISGSSLERSKEIAEQLALP T0384 51 :LFDQLEVFFK 2ahrA 47 :YAMSHQDLID T0384 62 :SFDLVYIASPNSLHFAQA 2ahrA 57 :QVDLVILGIKPQLFETVL T0384 87 :KHVIL 2ahrA 81 :QPIIS T0384 93 :KPAVSQPQEWFDLI 2ahrA 86 :MAAGISLQRLATFV T0384 112 :NNCFIFEA 2ahrA 101 :QDLPLLRI T0384 120 :ARNYHEKAFTTIKNFL 2ahrA 126 :NALVSQELQARVRDLT T0384 139 :QVLG 2ahrA 142 :DSFG T0384 265 :QVQLPIQQAP 2ahrA 147 :TFDISEKDFD T0384 275 :HTMTEEVAAFAHMIQQPD 2ahrA 167 :AYIYLFIEALAKAGVKNG T0384 297 :QTWLYDAGSVHELLYTMRQTA 2ahrA 185 :IPKAKALEIVTQTVLASASNL Number of specific fragments extracted= 13 number of extra gaps= 0 total=1556 Number of alignments=104 # 2ahrA read from 2ahrA/merged-good-all-a2m # found chain 2ahrA in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSG 2ahrA 1 :MKIGIIGVGKMASAIIKGLKQTP T0384 26 :YQLV 2ahrA 24 :HELI T0384 31 :IYSRKLETAATFASRYQN 2ahrA 28 :ISGSSLERSKEIAEQLAL T0384 50 :QLFDQLEVFF 2ahrA 46 :PYAMSHQDLI T0384 62 :SFDLVYIASPNSLHFAQA 2ahrA 57 :QVDLVILGIKPQLFETVL T0384 87 :KHVILEKPAVSQPQEWFDLI 2ahrA 80 :KQPIISMAAGISLQRLATFV T0384 112 :NNCFIFE 2ahrA 101 :QDLPLLR T0384 119 :AARNYHEKAFTTIKNFLAD 2ahrA 125 :GNALVSQELQARVRDLTDS T0384 140 :VLGADF 2ahrA 144 :FGSTFD T0384 152 :SKMPD 2ahrA 150 :ISEKD T0384 183 :LYAAVRLFG 2ahrA 155 :FDTFTALAG T0384 272 :QAPHTMTEEVAAFAHMIQQPDLNL 2ahrA 164 :SSPAYIYLFIEALAKAGVKNGIPK T0384 298 :TWLYDAGSVHELLYT 2ahrA 188 :AKALEIVTQTVLASA Number of specific fragments extracted= 13 number of extra gaps= 0 total=1569 Number of alignments=105 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3dbvO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0384/3dbvO/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0384/3dbvO/merged-good-all-a2m.gz for input Trying 3dbvO/merged-good-all-a2m Error: Couldn't open file 3dbvO/merged-good-all-a2m or 3dbvO/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2c82A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2c82A expands to /projects/compbio/data/pdb/2c82.pdb.gz 2c82A:# T0384 read from 2c82A/merged-good-all-a2m # 2c82A read from 2c82A/merged-good-all-a2m # adding 2c82A to template set # found chain 2c82A in template set T0384 1 :MLKLGVIG 2c82A 12 :RLRVVVLG T0384 9 :TGAISHHFIEAAHTSGE 2c82A 21 :TGSIGTQALQVIADNPD T0384 26 :YQLVAIYS 2c82A 39 :FEVVGLAA T0384 34 :RKLETAATFASRYQ 2c82A 49 :AHLDTLLRQRAQTG T0384 48 :NIQLFD 2c82A 79 :DIPYHG T0384 54 :QL 2c82A 86 :DA T0384 56 :EVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEK 2c82A 90 :RLVEQTEADVVLNALVGALGLRPTLAALKTGARLALAN T0384 102 :WFDLI 2c82A 128 :KESLV T0384 107 :QTAEKN 2c82A 136 :SLVLRA T0384 113 :NCFIFEAA 2c82A 145 :GQIVPVDS T0384 127 :AFTTIKNFLADKQ 2c82A 153 :EHSALAQCLRGGT T0384 141 :LG 2c82A 166 :PD T0384 144 :DFNYAKYSSKMPDLLAGQT 2c82A 168 :EVAKLVLTASGGPFRGWSA T0384 163 :PNVFSDRFAG 2c82A 200 :HPTWSMGPMN T0384 173 :GALMDLGIYPLY 2c82A 214 :ASLVNKGLEVIE T0384 186 :AVRLFG 2c82A 226 :THLLFG T0384 192 :KANDATYHAQQ 2c82A 233 :PYDRIDVVVHP T0384 208 :DLNGDGILFYPDYQVHIKAGKN 2c82A 244 :QSIIHSMVTFIDGSTIAQASPP T0384 251 :EHIRSAIFTDHQGNQVQLPIQQAPH 2c82A 279 :RRVSGAAAACDFHTASSWEFEPLDT T0384 276 :TMTEEVAAFAHMIQQ 2c82A 343 :GFPAIVGIIADVLHA T0384 291 :PDLNLYQTWLYDAGSVHELL 2c82A 359 :DQWAVEPATVDDVLDAQRWA T0384 311 :YTMRQTAGI 2c82A 380 :ERAQRAVSG Number of specific fragments extracted= 22 number of extra gaps= 0 total=1591 Number of alignments=106 # 2c82A read from 2c82A/merged-good-all-a2m # found chain 2c82A in template set T0384 2 :LKLGVIG 2c82A 13 :LRVVVLG T0384 9 :TGAISHHFIEAAHTSGE 2c82A 21 :TGSIGTQALQVIADNPD T0384 26 :YQLVAIYS 2c82A 39 :FEVVGLAA T0384 34 :RKLETAATFASRYQNI 2c82A 49 :AHLDTLLRQRAQTGVT T0384 50 :QLFDQLEVFFKS 2c82A 83 :HGSDAATRLVEQ T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILE 2c82A 96 :EADVVLNALVGALGLRPTLAALKTGARLALA T0384 95 :AV 2c82A 133 :AG T0384 102 :WFDLIQTA 2c82A 135 :GSLVLRAA T0384 113 :NC 2c82A 145 :GQ T0384 116 :IF 2c82A 147 :IV T0384 123 :YHEKAFTTIKNFL 2c82A 149 :PVDSEHSALAQCL T0384 137 :DKQVLG 2c82A 162 :RGGTPD T0384 143 :ADFNYAKYSSK 2c82A 169 :VAKLVLTASGG T0384 154 :MPDLLAGQTPNVFSDRF 2c82A 193 :TPEQAGAHPTWSMGPMN T0384 171 :AGGALMDLGIYPLY 2c82A 212 :NSASLVNKGLEVIE T0384 186 :AVRLFG 2c82A 226 :THLLFG T0384 192 :KANDATYHAQQL 2c82A 233 :PYDRIDVVVHPQ T0384 209 :LNGDGILFYPDYQVHIKAGKNI 2c82A 245 :SIIHSMVTFIDGSTIAQASPPD T0384 256 :AIFTD 2c82A 286 :AACDF T0384 263 :GNQVQLPIQQAP 2c82A 291 :HTASSWEFEPLD T0384 276 :TMTEEVAAFAHMIQQ 2c82A 343 :GFPAIVGIIADVLHA T0384 291 :PDLNLYQTWLYDAGSVHELL 2c82A 359 :DQWAVEPATVDDVLDAQRWA T0384 311 :YTMRQTAGI 2c82A 380 :ERAQRAVSG Number of specific fragments extracted= 23 number of extra gaps= 0 total=1614 Number of alignments=107 # 2c82A read from 2c82A/merged-good-all-a2m # found chain 2c82A in template set T0384 1 :MLKLGVIGT 2c82A 12 :RLRVVVLGS T0384 10 :GAISHHFIEAAHTSGE 2c82A 22 :GSIGTQALQVIADNPD T0384 26 :YQLVAIYS 2c82A 39 :FEVVGLAA T0384 34 :RKLETAATFASRYQN 2c82A 49 :AHLDTLLRQRAQTGV T0384 49 :IQLFD 2c82A 80 :IPYHG T0384 55 :LEVFF 2c82A 88 :ATRLV T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGKHVILEK 2c82A 94 :QTEADVVLNALVGALGLRPTLAALKTGARLALAN T0384 104 :DL 2c82A 129 :ES T0384 106 :IQTAEKN 2c82A 135 :GSLVLRA T0384 113 :NCFIFEA 2c82A 145 :GQIVPVD T0384 126 :KAFTTIKNFLADKQVLGADFNYAKYSSKMPDLLAG 2c82A 152 :SEHSALAQCLRGGTPDEVAKLVLTASGGPFRGWSA T0384 165 :VFSDRFAG 2c82A 205 :MGPMNTLN T0384 173 :GALMDLGIYPLYA 2c82A 214 :ASLVNKGLEVIET T0384 187 :VRLFG 2c82A 227 :HLLFG T0384 192 :KANDATYHAQ 2c82A 233 :PYDRIDVVVH T0384 207 :IDLNGDGILFYPDYQVHIKAGKNIT 2c82A 243 :PQSIIHSMVTFIDGSTIAQASPPDM T0384 248 :NTIEHIRSAIFTDHQ 2c82A 279 :RRVSGAAAACDFHTA T0384 278 :TEEVAAFAHMIQQPD 2c82A 327 :NAANEEAAAAFLAGR Number of specific fragments extracted= 18 number of extra gaps= 0 total=1632 Number of alignments=108 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1jvsA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1jvsA expands to /projects/compbio/data/pdb/1jvs.pdb.gz 1jvsA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0384 read from 1jvsA/merged-good-all-a2m # 1jvsA read from 1jvsA/merged-good-all-a2m # adding 1jvsA to template set # found chain 1jvsA in template set T0384 2 :LKLGVIG 1jvsA 1 :KQLTILG T0384 9 :TGAISHHFIEAAHTSGE 1jvsA 9 :TGSIGCSTLDVVRHNPE T0384 26 :YQLVAIYSR 1jvsA 27 :FRVVALVAG T0384 36 :LETAATFASRYQ 1jvsA 38 :VTRMVEQCLEFS T0384 48 :NIQLFDQ 1jvsA 74 :RTEVLSG T0384 55 :L 1jvsA 84 :A T0384 56 :EVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVIL 1jvsA 86 :DMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILL T0384 101 :EWFDLIQTAEKNNCFIFEAA 1jvsA 130 :CGRLFMDAVKQSKAQLLPVD T0384 126 :KAFTTIK 1jvsA 150 :SEHNAIF T0384 133 :NFLAD 1jvsA 162 :PIQHN T0384 141 :LG 1jvsA 167 :LG T0384 143 :ADFNYAKYSSKMPDLLAGQT 1jvsA 175 :NGVVSILLTGSGGPFRETPL T0384 163 :PNVFSDRF 1jvsA 210 :NWSMGRKI T0384 171 :AGGALMDLGIYPL 1jvsA 220 :DSATMMNKGLEYI T0384 185 :AAVRLFG 1jvsA 233 :EARWLFN T0384 192 :KANDATYHAQQ 1jvsA 241 :SASQMEVLIHP T0384 208 :DLNGDGILFYPDYQVHIKAG 1jvsA 252 :QSVIHSMVRYQDGSVLAQLG T0384 248 :NTI 1jvsA 272 :EPD T0384 251 :EHIRSAIFTDHQGNQVQLPIQQAPHTMTEEVAAFAHMIQQ 1jvsA 287 :NRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQ T0384 299 :WLYDAGSVHELLYTMRQTAGIRF 1jvsA 327 :GQAATTALNAANEITVAAFLAQQ Number of specific fragments extracted= 20 number of extra gaps= 0 total=1652 Number of alignments=109 # 1jvsA read from 1jvsA/merged-good-all-a2m # found chain 1jvsA in template set T0384 2 :LKLGVIG 1jvsA 1 :KQLTILG T0384 9 :TGAISHHFIEAAHTS 1jvsA 9 :TGSIGCSTLDVVRHN T0384 24 :GEYQLVAIYSR 1jvsA 25 :EHFRVVALVAG T0384 35 :KLETAATFASRYQNI 1jvsA 37 :NVTRMVEQCLEFSPR T0384 50 :QLFDQLEVFFK 1jvsA 76 :EVLSGQQAACD T0384 61 :SSFDLVYIASPNSLHFAQAKAALSAGKHVILE 1jvsA 91 :EDVDQVMAAIVGAAGLLPTLAAIRAGKTILLA T0384 96 :V 1jvsA 123 :N T0384 99 :PQEWFDLIQTAEKNNCFIFEA 1jvsA 128 :VTCGRLFMDAVKQSKAQLLPV T0384 125 :EKAFTTIKNF 1jvsA 149 :DSEHNAIFQS T0384 135 :L 1jvsA 163 :I T0384 138 :KQVL 1jvsA 164 :QHNL T0384 142 :GADFNYAKYSSK 1jvsA 176 :GVVSILLTGSGG T0384 154 :MPDLLAGQTPNVFSDRF 1jvsA 201 :TPDQACRHPNWSMGRKI T0384 171 :AGGALMDLGIYPLY 1jvsA 220 :DSATMMNKGLEYIE T0384 186 :AVRLFG 1jvsA 234 :ARWLFN T0384 192 :KANDATYHAQQL 1jvsA 241 :SASQMEVLIHPQ T0384 209 :LNGDGILFYPDYQVHIKAGKN 1jvsA 253 :SVIHSMVRYQDGSVLAQLGEP T0384 273 :AP 1jvsA 274 :DM T0384 275 :HTMTEEVAAFAHMIQQPDL 1jvsA 332 :TALNAANEITVAAFLAQQI Number of specific fragments extracted= 19 number of extra gaps= 0 total=1671 Number of alignments=110 # 1jvsA read from 1jvsA/merged-good-all-a2m # found chain 1jvsA in template set T0384 2 :LKLGVIGT 1jvsA 1 :KQLTILGS T0384 10 :GAISHHFIEAAHTSGE 1jvsA 10 :GSIGCSTLDVVRHNPE T0384 26 :YQLVAIYS 1jvsA 27 :FRVVALVA T0384 35 :KLETAATFASRY 1jvsA 57 :DEASAKLLKTML T0384 47 :Q 1jvsA 72 :G T0384 49 :IQLFDQLEVFF 1jvsA 75 :TEVLSGQQAAC T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGKHVIL 1jvsA 90 :LEDVDQVMAAIVGAAGLLPTLAAIRAGKTILL T0384 102 :WFDLIQTAEKNNCFIFEAAR 1jvsA 131 :GRLFMDAVKQSKAQLLPVDS T0384 127 :AFTTIK 1jvsA 151 :EHNAIF T0384 133 :NFLAD 1jvsA 162 :PIQHN T0384 140 :VL 1jvsA 167 :LG T0384 142 :GADFNYAKYSSKMPDLLAGQTP 1jvsA 176 :GVVSILLTGSGGPFRETPLRDL T0384 164 :NVFSDRFAGGALMDLGIYPLY 1jvsA 213 :MGRKISVDSATMMNKGLEYIE T0384 186 :AVRLFGKANDATYHAQQL 1jvsA 234 :ARWLFNASASQMEVLIHP T0384 208 :DLNGDGILFYPDYQVHIKAGKNIT 1jvsA 252 :QSVIHSMVRYQDGSVLAQLGEPDM T0384 250 :IEHIRSAIFTDH 1jvsA 286 :PNRVNSGVKPLD T0384 263 :GNQVQLPIQQAPHTMTEEVAAFAHMIQQP 1jvsA 299 :CKLSALTFAAPDYDRYPCLKLAMEAFEQG T0384 301 :YDAGSVHELLYTMRQT 1jvsA 328 :QAATTALNAANEITVA Number of specific fragments extracted= 18 number of extra gaps= 0 total=1689 Number of alignments=111 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ff9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ff9A expands to /projects/compbio/data/pdb/1ff9.pdb.gz 1ff9A:# T0384 read from 1ff9A/merged-good-all-a2m # 1ff9A read from 1ff9A/merged-good-all-a2m # adding 1ff9A to template set # found chain 1ff9A in template set Warning: unaligning (T0384)P71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ff9A)F80 Warning: unaligning (T0384)L74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ff9A)F80 T0384 1 :MLKLGVIGTGAISHHFIEAAHTS 1ff9A 3 :TKSVLMLGSGFVTRPTLDVLTDS T0384 25 :EYQLV 1ff9A 26 :GIKVT T0384 31 :IYSRKLETAATFASRYQNIQLFD 1ff9A 31 :VACRTLESAKKLSAGVQHSTPIS T0384 55 :L 1ff9A 58 :D T0384 56 :EVFFK 1ff9A 60 :AALDA T0384 61 :SSFDLVYIAS 1ff9A 67 :AKHDLVISLI T0384 75 :HFAQAKAALSAGKHVIL 1ff9A 81 :HATVIKSAIRQKKHVVT T0384 95 :AVSQPQEWFDLIQTAEKNNCFIFEAARNY 1ff9A 98 :TSYVSPAMMELDQAAKDAGITVMNEIGLD T0384 124 :HEKAFTTIKNFLADKQ 1ff9A 131 :HLYAIKTIEEVHAAGG T0384 144 :DFNYAKYSSK 1ff9A 147 :KIKTFLSYCG T0384 154 :MPDLLAGQT 1ff9A 158 :LPAPESSDN T0384 163 :PNVFS 1ff9A 331 :TPRGN T0384 182 :PLYAAVRLFG 1ff9A 336 :ALDTLCATLE T0384 201 :QQLDNSIDLNGDGILF 1ff9A 348 :MQFEEGERDLVMLQHK T0384 245 :LTLNTIEHIRSAIFTD 1ff9A 364 :FEIENKDGSRETRTSS T0384 264 :NQVQLPIQQAPH 1ff9A 380 :LCEYGAPIGSGG T0384 276 :TMTEEVAAFAHMIQQPDLNLY 1ff9A 398 :LVGVPCAVAVKFVLDGTISDR T0384 309 :LLYTMRQTAGIRFEA 1ff9A 428 :INDPLMKELKEKYGI Number of specific fragments extracted= 18 number of extra gaps= 0 total=1707 Number of alignments=112 # 1ff9A read from 1ff9A/merged-good-all-a2m # found chain 1ff9A in template set Warning: unaligning (T0384)P71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ff9A)F80 Warning: unaligning (T0384)L74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ff9A)F80 T0384 2 :LKLGVIGTGAISHHFIEAAHTS 1ff9A 4 :KSVLMLGSGFVTRPTLDVLTDS T0384 25 :EYQLV 1ff9A 26 :GIKVT T0384 31 :IYSRKLETAATFAS 1ff9A 31 :VACRTLESAKKLSA T0384 47 :QNI 1ff9A 45 :GVQ T0384 50 :QLFDQLEVFFK 1ff9A 57 :NDDAALDAEVA T0384 62 :SFDLVYIAS 1ff9A 68 :KHDLVISLI T0384 75 :HFAQAKAALSAGKHVIL 1ff9A 81 :HATVIKSAIRQKKHVVT T0384 95 :AVSQPQEWFDLIQTAEKNNCFIF 1ff9A 98 :TSYVSPAMMELDQAAKDAGITVM T0384 118 :EAARNYHEKAF 1ff9A 123 :IGLDPGIDHLY T0384 129 :TTIKNFLADKQ 1ff9A 135 :IKTIEEVHAAG T0384 142 :G 1ff9A 146 :G T0384 143 :ADFNYAKYSS 1ff9A 148 :IKTFLSYCGG T0384 154 :MPDLLAGQTPNVFSDRFAG 1ff9A 158 :LPAPESSDNPLGYKFSWSS T0384 173 :GALMDLG 1ff9A 178 :GVLLALR T0384 194 :ND 1ff9A 185 :NA T0384 200 :AQQLDNS 1ff9A 187 :ASFYKDG T0384 207 :IDLNGDGILF 1ff9A 354 :ERDLVMLQHK T0384 245 :LTLNTIEHIRSAIFT 1ff9A 364 :FEIENKDGSRETRTS T0384 265 :QVQLPIQQAP 1ff9A 379 :SLCEYGAPIG T0384 275 :HTMTEEVAAFAHMIQQPDLNLYQ 1ff9A 397 :KLVGVPCAVAVKFVLDGTISDRG T0384 298 :TWLYDAGSVHELLY 1ff9A 424 :MNSKINDPLMKELK Number of specific fragments extracted= 21 number of extra gaps= 0 total=1728 Number of alignments=113 # 1ff9A read from 1ff9A/merged-good-all-a2m # found chain 1ff9A in template set Warning: unaligning (T0384)P71 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ff9A)F80 Warning: unaligning (T0384)L74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ff9A)F80 T0384 2 :LKLGVIGTGAISHHFIEAAHTS 1ff9A 4 :KSVLMLGSGFVTRPTLDVLTDS T0384 25 :EYQLV 1ff9A 26 :GIKVT T0384 31 :IYSRKLETAATFASRYQNIQLFD 1ff9A 31 :VACRTLESAKKLSAGVQHSTPIS T0384 54 :QLEVFF 1ff9A 61 :ALDAEV T0384 62 :SFDLVYIAS 1ff9A 68 :KHDLVISLI T0384 75 :HFAQAKAALSAGKHVILE 1ff9A 81 :HATVIKSAIRQKKHVVTT T0384 96 :VSQPQEWFDLIQTAEKNNCFIFEAARNY 1ff9A 99 :SYVSPAMMELDQAAKDAGITVMNEIGLD T0384 124 :HEKAFTTIKNFLADK 1ff9A 131 :HLYAIKTIEEVHAAG T0384 141 :LGADFNYAKYSSKMPDLLAGQTP 1ff9A 146 :GKIKTFLSYCGGLPAPESSDNPL T0384 165 :V 1ff9A 333 :R T0384 180 :IYPLYAAVRLFGKA 1ff9A 334 :GNALDTLCATLEEK T0384 201 :QQLDNSIDLNGDGILFY 1ff9A 348 :MQFEEGERDLVMLQHKF T0384 218 :PDYQVHIKAGKNIT 1ff9A 369 :KDGSRETRTSSLCE T0384 265 :QVQLPIQQAPHTMTEEVAAFAHMIQQPDLNL 1ff9A 387 :IGSGGYSAMAKLVGVPCAVAVKFVLDGTISD T0384 296 :YQTWLYDAGSVHE 1ff9A 424 :MNSKINDPLMKEL Number of specific fragments extracted= 15 number of extra gaps= 0 total=1743 Number of alignments=114 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1np3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1np3A expands to /projects/compbio/data/pdb/1np3.pdb.gz 1np3A:# T0384 read from 1np3A/merged-good-all-a2m # 1np3A read from 1np3A/merged-good-all-a2m # adding 1np3A to template set # found chain 1np3A in template set T0384 3 :KLGVIGTGAISHHFIEAAHTS 1np3A 18 :KVAIIGYGSQGHAHACNLKDS T0384 25 :EYQLVAIYSRKLETAATF 1np3A 39 :GVDVTVGLRSGSATVAKA T0384 44 :SRYQ 1np3A 57 :EAHG T0384 49 :IQL 1np3A 61 :LKV T0384 53 :DQL 1np3A 64 :ADV T0384 56 :EVF 1np3A 68 :TAV T0384 61 :SSFDLVYIASPNSLHFAQAK 1np3A 71 :AAADVVMILTPDEFQGRLYK T0384 85 :AGKHVILE 1np3A 99 :KGATLAFA T0384 112 :NNCFIFEAARNYHEK 1np3A 120 :ADLDVIMIAPKAPGH T0384 130 :TIKNFLADKQVLG 1np3A 135 :TVRSEFVKGGGIP T0384 147 :YAKYSSKMPDLLA 1np3A 149 :LIAIYQDASGNAK T0384 181 :YPLYAAVRLFG 1np3A 163 :VALSYACGVGG T0384 192 :K 1np3A 177 :G T0384 268 :LPIQQAPH 1np3A 178 :IIETTFKD T0384 276 :TMTEEVAAFAHMIQQPDLNLY 1np3A 202 :CVELVKAGFETLVEAGYAPEM T0384 299 :WL 1np3A 223 :AY Number of specific fragments extracted= 16 number of extra gaps= 0 total=1759 Number of alignments=115 # 1np3A read from 1np3A/merged-good-all-a2m # found chain 1np3A in template set T0384 3 :KLGVIGTGAISHHFIEAAHTS 1np3A 18 :KVAIIGYGSQGHAHACNLKDS T0384 25 :EYQLV 1np3A 39 :GVDVT T0384 31 :IYSR 1np3A 44 :VGLR T0384 35 :KLE 1np3A 49 :GSA T0384 39 :AATFASRYQNI 1np3A 52 :TVAKAEAHGLK T0384 52 :FDQLEVFFK 1np3A 63 :VADVKTAVA T0384 62 :SFDLVYIASPNSLHFAQAKA 1np3A 72 :AADVVMILTPDEFQGRLYKE T0384 86 :GKHVILE 1np3A 100 :GATLAFA T0384 93 :KPAV 1np3A 117 :VPRA T0384 113 :NC 1np3A 121 :DL T0384 115 :FIFEAARNYHEKAFTTI 1np3A 124 :VIMIAPKAPGHTVRSEF T0384 136 :ADKQVLG 1np3A 141 :VKGGGIP T0384 146 :NYAKYSSKMPDLLAG 1np3A 148 :DLIAIYQDASGNAKN T0384 181 :YPLYAAVRLFG 1np3A 163 :VALSYACGVGG T0384 192 :K 1np3A 177 :G T0384 275 :HTMTEEVAAFAHMIQQPD 1np3A 201 :GCVELVKAGFETLVEAGY T0384 295 :LYQT 1np3A 219 :APEM Number of specific fragments extracted= 17 number of extra gaps= 0 total=1776 Number of alignments=116 # 1np3A read from 1np3A/merged-good-all-a2m # found chain 1np3A in template set T0384 3 :KLGVIGTGAISHHFIEAAHTS 1np3A 18 :KVAIIGYGSQGHAHACNLKDS T0384 25 :EYQLVAIYSRKLETAATF 1np3A 39 :GVDVTVGLRSGSATVAKA T0384 44 :SRYQN 1np3A 57 :EAHGL T0384 51 :LFDQLEVFF 1np3A 62 :KVADVKTAV T0384 62 :SFDLVYIASPNSLHFAQAK 1np3A 72 :AADVVMILTPDEFQGRLYK T0384 81 :AALSAGK 1np3A 109 :FSIHYNQ T0384 112 :NNCFIFEAARNYHEK 1np3A 120 :ADLDVIMIAPKAPGH T0384 130 :TIKNFLADKQVLGADFNYAKYSSKMPDL 1np3A 135 :TVRSEFVKGGGIPDLIAIYQDASGNAKN T0384 181 :YPLYAAVRLFGKANDATYHA 1np3A 163 :VALSYACGVGGGRTGIIETT T0384 268 :LPIQQAPHTMTEEVAAFAHMIQQPDL 1np3A 194 :EQAVLCGGCVELVKAGFETLVEAGYA Number of specific fragments extracted= 10 number of extra gaps= 0 total=1786 Number of alignments=117 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nqoA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nqoA expands to /projects/compbio/data/pdb/1nqo.pdb.gz 1nqoA:# T0384 read from 1nqoA/merged-good-all-a2m # 1nqoA read from 1nqoA/merged-good-all-a2m # adding 1nqoA to template set # found chain 1nqoA in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYS 1nqoA 1 :VKVGINGFGRIGRNVFRAALKNPDIEVVAVND T0384 34 :RK 1nqoA 34 :TD T0384 39 :AATFASRYQ 1nqoA 37 :ANTLAHLLK T0384 48 :NIQLFDQLEV 1nqoA 72 :IVKAERDPEN T0384 58 :FFKSSFDLVYIASPNSLHFAQAKAALSAG 1nqoA 84 :WGEIGVDIVVESTGRFTKREDAAKHLEAG T0384 87 :KHVILEKPAVSQ 1nqoA 114 :KKVIISAPAKNE T0384 111 :KNNCFIFEAARNY 1nqoA 138A:PKAHHVISNASST T0384 124 :HEKAFTTIKNFL 1nqoA 154 :LAPFAKVLHEQF T0384 144 :DFNYAKYS 1nqoA 166 :GIVRGMMT T0384 154 :MPDLLAGQTPNVFSDRFAGGAL 1nqoA 182 :QRILDLPHKDLRRARAAAESII T0384 186 :AVRLFGKAN 1nqoA 214 :VALVLPELK T0384 195 :DATYHAQQLDNSIDLNGDGILFYPD 1nqoA 224 :KLNGMAMRVPTPNVSVVDLVAELEK T0384 277 :MTEEVAAFAHMIQQ 1nqoA 252 :VEEVNAALKAAAEG T0384 299 :WLYDAGSVHELLYTMRQT 1nqoA 314 :ETGYSHRVVDLAAYIASK Number of specific fragments extracted= 14 number of extra gaps= 0 total=1800 Number of alignments=118 # 1nqoA read from 1nqoA/merged-good-all-a2m # found chain 1nqoA in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYS 1nqoA 1 :VKVGINGFGRIGRNVFRAALKNPDIEVVAVND T0384 34 :RKLE 1nqoA 34 :TDAN T0384 41 :TFASRYQNI 1nqoA 39 :TLAHLLKYD T0384 50 :QLFDQLEVF 1nqoA 74 :KAERDPENL T0384 59 :FKS 1nqoA 84 :WGE T0384 62 :SFDLVYIASPNSLHFAQAKAALSAG 1nqoA 88 :GVDIVVESTGRFTKREDAAKHLEAG T0384 87 :KHVILEKPAV 1nqoA 114 :KKVIISAPAK T0384 97 :SQPQ 1nqoA 137 :YDPK T0384 113 :NCFIFEAARN 1nqoA 140 :AHHVISNASS T0384 123 :YHEKAFTTIKNFL 1nqoA 153 :CLAPFAKVLHEQF T0384 142 :GADFNYAKYSSK 1nqoA 166 :GIVRGMMTTVHS T0384 186 :AVRLFGKAN 1nqoA 214 :VALVLPELK T0384 195 :DATYHAQQLDNSIDLNGDGILFYPDY 1nqoA 224 :KLNGMAMRVPTPNVSVVDLVAELEKE T0384 275 :HTMTEEVAAFAHMIQQPDLN 1nqoA 250 :VTVEEVNAALKAAAEGELKG T0384 295 :LYQ 1nqoA 276 :EPL T0384 298 :TWLYDAGSVHELLYTMRQ 1nqoA 313 :NETGYSHRVVDLAAYIAS Number of specific fragments extracted= 16 number of extra gaps= 0 total=1816 Number of alignments=119 # 1nqoA read from 1nqoA/merged-good-all-a2m # found chain 1nqoA in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKL 1nqoA 1 :VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTD T0384 39 :AATFASRY 1nqoA 37 :ANTLAHLL T0384 49 :IQLFDQLEVFF 1nqoA 73 :VKAERDPENLA T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGK 1nqoA 86 :EIGVDIVVESTGRFTKREDAAKHLEAGA T0384 88 :HVILEKPAVSQ 1nqoA 115 :KVIISAPAKNE T0384 112 :NNCFIFEAARNYH 1nqoA 139 :KAHHVISNASSTT T0384 125 :EKAFTTIKNFL 1nqoA 155 :APFAKVLHEQF T0384 142 :GADFNYAKYSSKMPDLLAGQTPNVFSDRFAG 1nqoA 166 :GIVRGMMTTVHSYTNDQRILDLPHKDLRRAR T0384 191 :GKANDATYHAQQL 1nqoA 201 :ESIIPTTTGAAKA T0384 204 :DNSIDLNGDGILFYPDYQ 1nqoA 233 :PTPNVSVVDLVAELEKEV T0384 276 :TMTEEVAAFAHMIQQP 1nqoA 251 :TVEEVNAALKAAAEGE Number of specific fragments extracted= 11 number of extra gaps= 0 total=1827 Number of alignments=120 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ydwA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ydwA expands to /projects/compbio/data/pdb/1ydw.pdb.gz 1ydwA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0384 read from 1ydwA/merged-good-all-a2m # 1ydwA read from 1ydwA/merged-good-all-a2m # adding 1ydwA to template set # found chain 1ydwA in template set Warning: unaligning (T0384)L2 because of BadResidue code BAD_PEPTIDE in next template residue (1ydwA)R8 Warning: unaligning (T0384)K3 because of BadResidue code BAD_PEPTIDE at template residue (1ydwA)R8 Warning: unaligning (T0384)L36 because of BadResidue code BAD_PEPTIDE in next template residue (1ydwA)E42 Warning: unaligning (T0384)E37 because of BadResidue code BAD_PEPTIDE at template residue (1ydwA)E42 Warning: unaligning (T0384)V66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ydwA)Y76 Warning: unaligning (T0384)Y67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ydwA)Y76 Warning: unaligning (T0384)V89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ydwA)L99 Warning: unaligning (T0384)I90 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ydwA)L99 Warning: unaligning (T0384)R121 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ydwA)W131 Warning: unaligning (T0384)N122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ydwA)W131 Warning: unaligning (T0384)P235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ydwA)I251 Warning: unaligning (T0384)C236 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ydwA)I251 Warning: unaligning (T0384)T240 because of BadResidue code BAD_PEPTIDE in next template residue (1ydwA)T256 Warning: unaligning (T0384)T241 because of BadResidue code BAD_PEPTIDE at template residue (1ydwA)T256 Warning: unaligning (T0384)T249 because of BadResidue code BAD_PEPTIDE in next template residue (1ydwA)F265 Warning: unaligning (T0384)I250 because of BadResidue code BAD_PEPTIDE at template residue (1ydwA)F265 Warning: unaligning (T0384)H261 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ydwA)W283 Warning: unaligning (T0384)Q262 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ydwA)W283 Warning: unaligning (T0384)T298 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ydwA)Y331 T0384 4 :LGVIGTGAISHHFIEAAHTSGEYQLVAIYSRK 1ydwA 9 :IGVMGCADIARKVSRAIHLAPNATISGVASRS T0384 38 :TAATFASRYQ 1ydwA 43 :KAKAFATANN T0384 48 :NIQLFDQL 1ydwA 56 :STKIHGSY T0384 56 :EVFFKSSFDL 1ydwA 65 :SLLEDPEIDA T0384 68 :IASPNSLHFAQAKAALSAGKH 1ydwA 77 :VPLPTSLHVEWAIKAAEKGKH T0384 91 :LEKPAVSQPQEWFDLIQTAEKNNCFIFEAA 1ydwA 100 :LEKPVAMNVTEFDKIVDACEANGVQIMDGT T0384 123 :YHEK 1ydwA 132 :VHNP T0384 136 :ADKQ 1ydwA 146 :DSER T0384 141 :LG 1ydwA 150 :FG T0384 144 :DFNYAKYSSKMPDLLA 1ydwA 152 :QLKTVQSCFSFAGDED T0384 163 :PNVFSDRFAG 1ydwA 172 :DIRVKPGLDG T0384 173 :GALMDLGIYPLYAAVRLFG 1ydwA 183 :GALGDAGWYAIRATLLANN T0384 192 :KANDATYH 1ydwA 204 :LPKTVTAF T0384 200 :AQQLDNSIDLNGDGILFYPDY 1ydwA 214 :AVLNEAGVILSCGASLSWEDG T0384 221 :QVHIKAGKNITSNL 1ydwA 236 :TATIYCSFLANLTM T0384 237 :EIY 1ydwA 252 :TAI T0384 242 :DGTLTLN 1ydwA 257 :KGTLRVH T0384 251 :EHIRSAIFTD 1ydwA 272 :TEASFTTSTK T0384 263 :GN 1ydwA 293 :SP T0384 276 :TMTEEVAAFA 1ydwA 306 :QEACMVREFA T0384 299 :WLYDAGSVHELLYTMRQTAGIRFE 1ydwA 332 :WPSISRKTQLVVDAVKESVDKNYQ Number of specific fragments extracted= 21 number of extra gaps= 9 total=1848 Number of alignments=121 # 1ydwA read from 1ydwA/merged-good-all-a2m # found chain 1ydwA in template set Warning: unaligning (T0384)L2 because of BadResidue code BAD_PEPTIDE in next template residue (1ydwA)R8 Warning: unaligning (T0384)K3 because of BadResidue code BAD_PEPTIDE at template residue (1ydwA)R8 Warning: unaligning (T0384)L36 because of BadResidue code BAD_PEPTIDE in next template residue (1ydwA)E42 Warning: unaligning (T0384)E37 because of BadResidue code BAD_PEPTIDE at template residue (1ydwA)E42 Warning: unaligning (T0384)V66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ydwA)Y76 Warning: unaligning (T0384)Y67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ydwA)Y76 Warning: unaligning (T0384)V89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ydwA)L99 Warning: unaligning (T0384)I90 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ydwA)L99 Warning: unaligning (T0384)R121 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ydwA)W131 Warning: unaligning (T0384)N122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ydwA)W131 Warning: unaligning (T0384)P235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ydwA)I251 Warning: unaligning (T0384)C236 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ydwA)I251 Warning: unaligning (T0384)T240 because of BadResidue code BAD_PEPTIDE in next template residue (1ydwA)T256 Warning: unaligning (T0384)T241 because of BadResidue code BAD_PEPTIDE at template residue (1ydwA)T256 Warning: unaligning (T0384)T249 because of BadResidue code BAD_PEPTIDE in next template residue (1ydwA)F265 Warning: unaligning (T0384)I250 because of BadResidue code BAD_PEPTIDE at template residue (1ydwA)F265 Warning: unaligning (T0384)E251 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ydwA)I266 Warning: unaligning (T0384)H252 because of BadResidue code BAD_PEPTIDE at template residue (1ydwA)I267 Warning: unaligning (T0384)T298 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ydwA)Y331 T0384 4 :LGVIGTGAISHHFIEAAHTSGEYQLVAIYSRK 1ydwA 9 :IGVMGCADIARKVSRAIHLAPNATISGVASRS T0384 38 :TAATFASRYQNI 1ydwA 43 :KAKAFATANNYP T0384 50 :QLFDQLEVFFKS 1ydwA 58 :KIHGSYESLLED T0384 62 :SFDL 1ydwA 71 :EIDA T0384 68 :IASPNSLHFAQAKAALSAGKH 1ydwA 77 :VPLPTSLHVEWAIKAAEKGKH T0384 91 :LEKPAVSQPQEWFDLIQTAEKNNCFIFEAA 1ydwA 100 :LEKPVAMNVTEFDKIVDACEANGVQIMDGT T0384 123 :YHEKAFTTIKNFLADKQVLG 1ydwA 132 :VHNPRTALLKEFLSDSERFG T0384 143 :ADFNYAKYSSKMPDLLAGQ 1ydwA 153 :LKTVQSCFSFAGDEDFLKN T0384 163 :PNVFSDRFAG 1ydwA 172 :DIRVKPGLDG T0384 173 :GALMDLGIYPLYAAVRLFG 1ydwA 183 :GALGDAGWYAIRATLLANN T0384 192 :KANDATY 1ydwA 204 :LPKTVTA T0384 199 :HAQQLDNSIDLNGDGILFYPDYQ 1ydwA 213 :GAVLNEAGVILSCGASLSWEDGR T0384 222 :VHIKAGKNITSNL 1ydwA 237 :ATIYCSFLANLTM T0384 237 :EIY 1ydwA 252 :TAI T0384 242 :DGTLTLN 1ydwA 257 :KGTLRVH T0384 253 :IRS 1ydwA 268 :PYK T0384 256 :AIFTDHQGNQVQLPIQQ 1ydwA 288 :VTAWVSPPSEHTVKTEL T0384 275 :HTMTEEVAAFAH 1ydwA 305 :PQEACMVREFAR T0384 299 :WLYDAGSVHELLYTMRQTAGIRFE 1ydwA 332 :WPSISRKTQLVVDAVKESVDKNYQ Number of specific fragments extracted= 19 number of extra gaps= 8 total=1867 Number of alignments=122 # 1ydwA read from 1ydwA/merged-good-all-a2m # found chain 1ydwA in template set Warning: unaligning (T0384)L2 because of BadResidue code BAD_PEPTIDE in next template residue (1ydwA)R8 Warning: unaligning (T0384)K3 because of BadResidue code BAD_PEPTIDE at template residue (1ydwA)R8 Warning: unaligning (T0384)L36 because of BadResidue code BAD_PEPTIDE in next template residue (1ydwA)E42 Warning: unaligning (T0384)E37 because of BadResidue code BAD_PEPTIDE at template residue (1ydwA)E42 Warning: unaligning (T0384)V66 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ydwA)Y76 Warning: unaligning (T0384)Y67 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ydwA)Y76 Warning: unaligning (T0384)V89 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ydwA)L99 Warning: unaligning (T0384)I90 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ydwA)L99 Warning: unaligning (T0384)R121 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ydwA)W131 Warning: unaligning (T0384)N122 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ydwA)W131 Warning: unaligning (T0384)P235 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ydwA)I251 Warning: unaligning (T0384)C236 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ydwA)I251 Warning: unaligning (T0384)T240 because of BadResidue code BAD_PEPTIDE in next template residue (1ydwA)T256 Warning: unaligning (T0384)T241 because of BadResidue code BAD_PEPTIDE at template residue (1ydwA)T256 Warning: unaligning (T0384)T249 because of BadResidue code BAD_PEPTIDE in next template residue (1ydwA)F265 Warning: unaligning (T0384)I250 because of BadResidue code BAD_PEPTIDE at template residue (1ydwA)F265 Warning: unaligning (T0384)E251 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ydwA)I266 Warning: unaligning (T0384)H252 because of BadResidue code BAD_PEPTIDE at template residue (1ydwA)I267 Warning: unaligning (T0384)Y296 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ydwA)Y331 Warning: unaligning (T0384)E324 because last residue in template chain is (1ydwA)S360 T0384 1 :M 1ydwA 6 :Q T0384 4 :LGVIGTGAISHHFIEAAHTSGEYQLVAIYSRK 1ydwA 9 :IGVMGCADIARKVSRAIHLAPNATISGVASRS T0384 38 :TAATFASRYQN 1ydwA 43 :KAKAFATANNY T0384 49 :IQLFDQLEVFF 1ydwA 57 :TKIHGSYESLL T0384 60 :KSSFDL 1ydwA 69 :DPEIDA T0384 68 :IASPNSLHFAQAKAALSAGKH 1ydwA 77 :VPLPTSLHVEWAIKAAEKGKH T0384 91 :LEKPAVSQPQEWFDLIQTAEKNNCFIFEAA 1ydwA 100 :LEKPVAMNVTEFDKIVDACEANGVQIMDGT T0384 123 :YHEKAFTTIKNFL 1ydwA 132 :VHNPRTALLKEFL T0384 136 :ADKQVLGADFNYAKYSSKMPDLLAGQTPNVFSDRFAGGALMDLGIYPLYAAVRLFGKANDATYHAQQL 1ydwA 146 :DSERFGQLKTVQSCFSFAGDEDFLKNDIRVKPGLDGLGALGDAGWYAIRATLLANNFELPKTVTAFPG T0384 204 :DNSIDLNGDGILFYPDYQVHIKAGKNIT 1ydwA 218 :EAGVILSCGASLSWEDGRTATIYCSFLA T0384 232 :SNL 1ydwA 247 :LTM T0384 237 :EIY 1ydwA 252 :TAI T0384 242 :DGTLTLN 1ydwA 257 :KGTLRVH T0384 253 :IRSAIFTDHQ 1ydwA 268 :PYKETEASFT T0384 263 :GNQVQLPIQQAPHTMTEEVAAF 1ydwA 293 :SPPSEHTVKTELPQEACMVREF T0384 297 :QTWLYDAGSVHELLYTMRQTAG 1ydwA 332 :WPSISRKTQLVVDAVKESVDKN T0384 319 :IRFEA 1ydwA 355 :QQISL Number of specific fragments extracted= 17 number of extra gaps= 8 total=1884 Number of alignments=123 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vknA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0384 read from 1vknA/merged-good-all-a2m # 1vknA read from 1vknA/merged-good-all-a2m # found chain 1vknA in training set T0384 1 :MLKLGVIGT 1vknA 1 :MIRAGIIGA T0384 10 :GAISHHFIEAAHTSGEYQLVAIYSRK 1vknA 11 :GYTGLELVRLLKNHPEAKITYLSSRT T0384 46 :YQ 1vknA 38 :AG T0384 48 :NIQLFD 1vknA 52 :NSILSE T0384 54 :QLEVFFK 1vknA 59 :DPEKVSK T0384 62 :SFDLVYIASPNSLHFAQA 1vknA 66 :NCDVLFTALPAGASYDLV T0384 86 :GKHVILEKP 1vknA 88 :GVKIIDLGA T0384 95 :AVSQPQEWFDLI 1vknA 99 :RFDDPGVYREWY T0384 113 :N 1vknA 116 :G T0384 114 :CFIFEAARNYHEKA 1vknA 120 :IKRVYGLPELHREE T0384 135 :LAD 1vknA 134 :IKN T0384 141 :LG 1vknA 137 :AQ T0384 174 :ALMDLGIYPLYAAVRLF 1vknA 139 :VVGNPGCYPTSVILALA T0384 191 :G 1vknA 161 :N T0384 192 :KANDATYHAQQL 1vknA 164 :DPETILVDAKSG T0384 204 :DNSIDLNGDGILFYPD 1vknA 232 :PMTRGILSTIYVKTDK T0384 228 :KNITSNLPCEIYTT 1vknA 278 :KWCYGSNHVFIGMQ T0384 242 :DGTLTLNTI 1vknA 296 :TNTLILMSA T0384 299 :WLYDAGSVHELL 1vknA 312 :ASGQAVQNMNIM Number of specific fragments extracted= 19 number of extra gaps= 0 total=1903 Number of alignments=124 # 1vknA read from 1vknA/merged-good-all-a2m # found chain 1vknA in training set T0384 1 :MLKLGVIGT 1vknA 1 :MIRAGIIGA T0384 10 :GAISHHFIEAAHTSGEYQLVAIYSRK 1vknA 11 :GYTGLELVRLLKNHPEAKITYLSSRT T0384 36 :LET 1vknA 38 :AGK T0384 39 :AATF 1vknA 42 :LEEI T0384 50 :QLFD 1vknA 54 :ILSE T0384 54 :QLEVFFK 1vknA 59 :DPEKVSK T0384 62 :SFDLVYIASPNSLHFAQA 1vknA 66 :NCDVLFTALPAGASYDLV T0384 86 :GKHVILEKP 1vknA 88 :GVKIIDLGA T0384 98 :QPQEWFD 1vknA 102 :DPGVYRE T0384 106 :IQTAEKNNCFIFEAARNYHEKAFTTIKNFL 1vknA 129 :LHREEIKNAQVVGNPGCYPTSVILALAPAL T0384 137 :DKQVLGADFNYAKYSSKMPDLLAGQT 1vknA 159 :KHNLVDPETILVDAKSGVSGAGRKEK T0384 163 :PNVFSDRF 1vknA 196 :LRPYNVAK T0384 176 :MDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYP 1vknA 204 :HRHVPEMEQELGKISGKKVNVVFTPHLVPMTRGILSTIYVKTD T0384 275 :HTMTEEVAAFAHMIQQPD 1vknA 247 :KSLEEIHEAYLEFYKNEP Number of specific fragments extracted= 14 number of extra gaps= 0 total=1917 Number of alignments=125 # 1vknA read from 1vknA/merged-good-all-a2m # found chain 1vknA in training set T0384 1 :MLKLGVIGT 1vknA 1 :MIRAGIIGA T0384 10 :GAISHHFIEAAHTSGEYQLVAIYSRK 1vknA 11 :GYTGLELVRLLKNHPEAKITYLSSRT T0384 45 :RYQN 1vknA 37 :YAGK T0384 49 :IQLFD 1vknA 53 :SILSE T0384 54 :QLEVFF 1vknA 59 :DPEKVS T0384 62 :SFDLVYIASPNSLHFAQA 1vknA 66 :NCDVLFTALPAGASYDLV T0384 110 :EK 1vknA 84 :RE T0384 112 :NNCFIFEAARNYHEKAFTTIKNFLAD 1vknA 87 :KGVKIIDLGADFRFDDPGVYREWYGK T0384 153 :K 1vknA 113 :E T0384 158 :LAGQTP 1vknA 114 :LSGYEN T0384 164 :NVFSDRFAGGALMDLGIYPLYAAVRLFG 1vknA 129 :LHREEIKNAQVVGNPGCYPTSVILALAP T0384 192 :KANDATYHAQQL 1vknA 164 :DPETILVDAKSG T0384 204 :DNSIDLNGDGILFYPD 1vknA 232 :PMTRGILSTIYVKTDK T0384 276 :TMTEEVAAFAHMIQQ 1vknA 248 :SLEEIHEAYLEFYKN Number of specific fragments extracted= 14 number of extra gaps= 0 total=1931 Number of alignments=126 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yqgA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1yqgA expands to /projects/compbio/data/pdb/1yqg.pdb.gz 1yqgA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0384 read from 1yqgA/merged-good-all-a2m # 1yqgA read from 1yqgA/merged-good-all-a2m # adding 1yqgA to template set # found chain 1yqgA in template set Warning: unaligning (T0384)L2 because first residue in template chain is (1yqgA)M1 T0384 3 :KLGVIGTGAISHHFIEAAHTSGEYQLV 1yqgA 2 :NVYFLGGGNMAAAVAGGLVKQGGYRIY T0384 31 :IYSRKLETAATFASRYQ 1yqgA 29 :IANRGAEKRERLEKELG T0384 49 :IQLFDQL 1yqgA 46 :VETSATL T0384 56 :EVF 1yqgA 54 :ELH T0384 61 :SS 1yqgA 57 :SD T0384 64 :DLVYIASPNSLHFAQA 1yqgA 59 :DVLILAVKPQDMEAAC T0384 85 :AGKHVIL 1yqgA 80 :NGALVLS T0384 93 :KPAVSQPQEWFDL 1yqgA 87 :VAAGLSVGTLSRY T0384 113 :N 1yqgA 102 :G T0384 114 :CFIFEAARNY 1yqgA 105 :RIVRVMPNTP T0384 124 :HEKAFTTIKNFLAD 1yqgA 131 :SETDRRIADRIMKS T0384 141 :LG 1yqgA 145 :VG T0384 149 :KYSS 1yqgA 147 :LTVW Number of specific fragments extracted= 13 number of extra gaps= 0 total=1944 Number of alignments=127 # 1yqgA read from 1yqgA/merged-good-all-a2m # found chain 1yqgA in template set Warning: unaligning (T0384)L2 because first residue in template chain is (1yqgA)M1 T0384 3 :KLGVIGTGAISHHFIEAAHTSGEYQLV 1yqgA 2 :NVYFLGGGNMAAAVAGGLVKQGGYRIY T0384 31 :IYSRKLETAATFASRYQNI 1yqgA 29 :IANRGAEKRERLEKELGVE T0384 51 :LFDQL 1yqgA 48 :TSATL T0384 62 :SF 1yqgA 54 :EL T0384 64 :DLVYIASPNSLHFAQA 1yqgA 59 :DVLILAVKPQDMEAAC T0384 85 :AGKHVILEK 1yqgA 80 :NGALVLSVA T0384 95 :AVSQPQEWFDL 1yqgA 89 :AGLSVGTLSRY T0384 112 :NNC 1yqgA 101 :GGT T0384 115 :FIFEA 1yqgA 106 :IVRVM T0384 120 :ARNYHEKAFTTIKNFL 1yqgA 127 :EAEVSETDRRIADRIM T0384 139 :QVLG 1yqgA 143 :KSVG T0384 147 :YAKYSSKMPDLL 1yqgA 147 :LTVWLDDEEKMH T0384 173 :GALMDLGI 1yqgA 159 :GITGISGS T0384 274 :P 1yqgA 167 :G T0384 275 :HTMTEEVAAFAHMIQQPD 1yqgA 169 :AYVFYLLDALQNAAIRQG T0384 298 :TWLYDAGSVH 1yqgA 187 :FDMAEARALS Number of specific fragments extracted= 16 number of extra gaps= 0 total=1960 Number of alignments=128 # 1yqgA read from 1yqgA/merged-good-all-a2m # found chain 1yqgA in template set Warning: unaligning (T0384)L2 because first residue in template chain is (1yqgA)M1 T0384 3 :KLGVIGTGAISHHFIEAAHTSGEYQLV 1yqgA 2 :NVYFLGGGNMAAAVAGGLVKQGGYRIY T0384 31 :IYSRKLETAATFASRYQN 1yqgA 29 :IANRGAEKRERLEKELGV T0384 50 :QLFDQLEVF 1yqgA 47 :ETSATLPEL T0384 60 :KSS 1yqgA 56 :HSD T0384 64 :DLVYIASPNSLHFAQA 1yqgA 59 :DVLILAVKPQDMEAAC T0384 85 :AGKHVIL 1yqgA 80 :NGALVLS T0384 93 :KPAVSQPQEWFDL 1yqgA 87 :VAAGLSVGTLSRY T0384 114 :CFIFEAARNY 1yqgA 105 :RIVRVMPNTP T0384 124 :HEKAFTTIKNFLAD 1yqgA 131 :SETDRRIADRIMKS T0384 140 :VLGADF 1yqgA 145 :VGLTVW T0384 151 :SSKMPD 1yqgA 151 :LDDEEK T0384 186 :AVRLFG 1yqgA 157 :MHGITG T0384 269 :PIQQAPHTMTEEVAAFAHMIQQPD 1yqgA 163 :ISGSGPAYVFYLLDALQNAAIRQG T0384 296 :YQTWLYDAGSVHELLYTM 1yqgA 187 :FDMAEARALSLATFKGAV Number of specific fragments extracted= 14 number of extra gaps= 0 total=1974 Number of alignments=129 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ebfA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ebfA expands to /projects/compbio/data/pdb/1ebf.pdb.gz 1ebfA:# T0384 read from 1ebfA/merged-good-all-a2m # 1ebfA read from 1ebfA/merged-good-all-a2m # adding 1ebfA to template set # found chain 1ebfA in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSG 1ebfA 6 :VNVAVIGAGVVGSAFLDQLLAMK T0384 25 :EYQLVAIYSR 1ebfA 32 :TYNLVLLAEA T0384 39 :AATFASRYQ 1ebfA 59 :WKAALAAST T0384 48 :NIQLFDQL 1ebfA 69 :KTLPLDDL T0384 56 :EVFFK 1ebfA 78 :AHLKT T0384 61 :SSFDLVYIASPNSLHFAQAKAALSAGKHVIL 1ebfA 84 :PKPVILVDNTSSAYIAGFYTKFVENGISIAT T0384 92 :EKPAVSQPQEWFDL 1ebfA 117 :KKAFSSDLATWKAL T0384 113 :NC 1ebfA 136 :TN T0384 115 :FIFEAARNYHEKAFTTIKNFLADKQ 1ebfA 140 :VYHEATVGAGLPIISFLREIIQTGD T0384 144 :DFNYAKYSS 1ebfA 165 :EVEKIEGIF T0384 180 :IYPLYAAVRLFGK 1ebfA 174 :SGTLSYIFNEFST T0384 204 :DNSIDLNGDGILFYPDYQVHIKAGKNITSN 1ebfA 280 :TENKVLRFIGKVDVATKSVSVGIEKYDYSH T0384 234 :LPCEIY 1ebfA 317 :SDNVIS T0384 245 :LTLNTIEHIRSAIFTDHQ 1ebfA 323 :IKTKRYTNPVVIQGAGAG T0384 299 :WLYDAGSVHELLYTMRQ 1ebfA 341 :AAVTAAGVLGDVIKIAQ Number of specific fragments extracted= 15 number of extra gaps= 0 total=1989 Number of alignments=130 # 1ebfA read from 1ebfA/merged-good-all-a2m # found chain 1ebfA in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSG 1ebfA 6 :VNVAVIGAGVVGSAFLDQLLAMK T0384 25 :EYQLVAIYSR 1ebfA 32 :TYNLVLLAEA T0384 35 :KLET 1ebfA 54 :NVGS T0384 39 :AATFASR 1ebfA 59 :WKAALAA T0384 48 :NIQLFDQLEVFFK 1ebfA 66 :STTKTLPLDDLIA T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVI 1ebfA 85 :KPVILVDNTSSAYIAGFYTKFVENGISIA T0384 91 :LEK 1ebfA 115 :PNK T0384 94 :PAVSQPQEWFDL 1ebfA 119 :AFSSDLATWKAL T0384 113 :NC 1ebfA 136 :TN T0384 115 :FIFEAARNYHEKAFTTIKNFL 1ebfA 140 :VYHEATVGAGLPIISFLREII T0384 137 :DKQ 1ebfA 161 :QTG T0384 142 :G 1ebfA 164 :D T0384 143 :ADFNYAKYSSK 1ebfA 166 :VEKIEGIFSGT T0384 154 :MPDLLAG 1ebfA 208 :EPDPRDD T0384 174 :ALMDLGIYPLYAAVRLFG 1ebfA 215 :LNGLDVARKVTIVGRISG T0384 192 :KAND 1ebfA 234 :EVES T0384 204 :D 1ebfA 239 :T T0384 207 :IDLNGDGILFYPDYQVHIKAGKNITSN 1ebfA 283 :KVLRFIGKVDVATKSVSVGIEKYDYSH T0384 234 :LPCEIY 1ebfA 317 :SDNVIS T0384 245 :LTLNTIEHIRSAIF 1ebfA 323 :IKTKRYTNPVVIQG T0384 295 :LYQTWLYDAGSVHELLYTMRQ 1ebfA 337 :AGAGAAVTAAGVLGDVIKIAQ Number of specific fragments extracted= 21 number of extra gaps= 0 total=2010 Number of alignments=131 # 1ebfA read from 1ebfA/merged-good-all-a2m # found chain 1ebfA in template set T0384 2 :LKLGVIGTGAISHHFIEAAHTSGE 1ebfA 6 :VNVAVIGAGVVGSAFLDQLLAMKS T0384 26 :YQLVAIYSRK 1ebfA 33 :YNLVLLAEAE T0384 39 :AATFASRYQN 1ebfA 59 :WKAALAASTT T0384 50 :QLFD 1ebfA 69 :KTLP T0384 55 :LEVFF 1ebfA 73 :LDDLI T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGKHVIL 1ebfA 83 :SPKPVILVDNTSSAYIAGFYTKFVENGISIAT T0384 92 :EKPAVSQPQEWFDL 1ebfA 117 :KKAFSSDLATWKAL T0384 114 :CFIFEAARNYHEKAFTTIKNFLADKQ 1ebfA 139 :FVYHEATVGAGLPIISFLREIIQTGD T0384 142 :GADFNYAKYSS 1ebfA 165 :EVEKIEGIFSG T0384 178 :LGIYPLYAAVRLFGKANDATYHAQQL 1ebfA 219 :DVARKVTIVGRISGVEVESPTSFPVQ T0384 204 :DNSIDLNGDGILFYPDYQVHIKAGKNIT 1ebfA 280 :TENKVLRFIGKVDVATKSVSVGIEKYDY T0384 232 :SNLPCEIY 1ebfA 315 :KGSDNVIS T0384 245 :LTLNTIEHIRSAIFTDHQ 1ebfA 323 :IKTKRYTNPVVIQGAGAG T0384 274 :PHTMTEEVAAFAHMIQ 1ebfA 341 :AAVTAAGVLGDVIKIA Number of specific fragments extracted= 14 number of extra gaps= 0 total=2024 Number of alignments=132 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a5z/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1a5z expands to /projects/compbio/data/pdb/1a5z.pdb.gz 1a5z:Warning: there is no chain 1a5z will retry with 1a5zA # T0384 read from 1a5z/merged-good-all-a2m # 1a5z read from 1a5z/merged-good-all-a2m # adding 1a5z to template set # found chain 1a5z in template set Warning: unaligning (T0384)L2 because first residue in template chain is (1a5z)M22 Warning: unaligning (T0384)Q47 because of BadResidue code BAD_PEPTIDE at template residue (1a5z)P71 T0384 3 :KLGVIGTGAISHHFIEAAHTSG 1a5z 23 :KIGIVGLGRVGSSTAFALLMKG T0384 27 :QLV 1a5z 48 :EMV T0384 31 :IYSRKLETAATFASRY 1a5z 51 :LIDVDKKRAEGDALDL T0384 48 :NIQLFDQL 1a5z 75 :RANIYAGD T0384 56 :EVF 1a5z 86 :ADL T0384 61 :SSFDLVYIASPN 1a5z 89 :KGSDVVIVAAGV T0384 74 :LHFAQAKAALSA 1a5z 108 :TRLQLLGRNARV T0384 102 :WFDLIQTAEKN 1a5z 120 :MKEIARNVSKY T0384 113 :NCFIFEAARNYHEKAFTTIKN 1a5z 132B:DSIVIVVTNPVDVLTYFFLKE T0384 141 :LG 1a5z 153 :SG T0384 166 :FSDRF 1a5z 155 :MDPRK T0384 174 :ALMDLGIYPLYAAVRLF 1a5z 160 :VFGSGTVLDTARLRTLI T0384 191 :G 1a5z 181 :G T0384 192 :KANDATYHAQQL 1a5z 183 :SPRSVHVYVIGE T0384 206 :SIDLNGDGILFYPD 1a5z 264 :DEKRVLTLSVYLED T0384 251 :EHIRSAIFTDHQGNQVQLPIQQAPH 1a5z 283 :DLCISVPVTLGKHGVERILELNLNE T0384 276 :TMTEEVAAFAHMIQQ 1a5z 314 :AFRKSASILKNAINE Number of specific fragments extracted= 17 number of extra gaps= 1 total=2041 Number of alignments=133 # 1a5z read from 1a5z/merged-good-all-a2m # found chain 1a5z in template set Warning: unaligning (T0384)L2 because first residue in template chain is (1a5z)M22 Warning: unaligning (T0384)N48 because of BadResidue code BAD_PEPTIDE in next template residue (1a5z)P71 Warning: unaligning (T0384)I49 because of BadResidue code BAD_PEPTIDE at template residue (1a5z)P71 T0384 3 :KLGVIGTGAISHHFIEAAHTS 1a5z 23 :KIGIVGLGRVGSSTAFALLMK T0384 25 :EY 1a5z 44 :GF T0384 27 :QLV 1a5z 48 :EMV T0384 31 :IYSRKLETAATFASRY 1a5z 51 :LIDVDKKRAEGDALDL T0384 47 :Q 1a5z 69 :G T0384 50 :QLFDQLEVF 1a5z 78 :IYAGDYADL T0384 60 :K 1a5z 89 :K T0384 62 :SFDLVYIASPNSLH 1a5z 90 :GSDVVIVAAGVPQK T0384 76 :FAQAKAALSA 1a5z 110 :LQLLGRNARV T0384 102 :WFDLIQTAEK 1a5z 120 :MKEIARNVSK T0384 112 :NNCFIFEAARNYHEKAFTTIKNF 1a5z 132A:PDSIVIVVTNPVDVLTYFFLKES T0384 156 :DLLAG 1a5z 154 :GMDPR T0384 173 :GALMDLGIYPLYAAVRL 1a5z 159 :KVFGSGTVLDTARLRTL T0384 190 :FG 1a5z 180 :CG T0384 192 :KANDATYHAQQLDNS 1a5z 183 :SPRSVHVYVIGEHGD T0384 207 :IDLNGDGILFYPDY 1a5z 265 :EKRVLTLSVYLEDY T0384 251 :EHIRSAIFTDHQGNQVQLP 1a5z 283 :DLCISVPVTLGKHGVERIL T0384 295 :LYQTWLYDAGSVHELLYTMRQTAG 1a5z 304 :ELNLNEEELEAFRKSASILKNAIN Number of specific fragments extracted= 18 number of extra gaps= 1 total=2059 Number of alignments=134 # 1a5z read from 1a5z/merged-good-all-a2m # found chain 1a5z in template set Warning: unaligning (T0384)L2 because first residue in template chain is (1a5z)M22 T0384 3 :KLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRY 1a5z 23 :KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDL T0384 47 :QNIQLFDQLEVF 1a5z 75 :RANIYAGDYADL T0384 61 :SSFDLVYIASPN 1a5z 89 :KGSDVVIVAAGV T0384 76 :FAQAKAALS 1a5z 110 :LQLLGRNAR T0384 101 :EWFDLIQTAEK 1a5z 119 :VMKEIARNVSK T0384 112 :NNCFIFEAARNYHEKAFTTIKNF 1a5z 132A:PDSIVIVVTNPVDVLTYFFLKES T0384 153 :KMPDL 1a5z 154 :GMDPR T0384 173 :GALMDLGIYPLYAAVRLFG 1a5z 159 :KVFGSGTVLDTARLRTLIA T0384 192 :KANDATYHAQQL 1a5z 183 :SPRSVHVYVIGE T0384 204 :DNSIDLNGDGILFYPD 1a5z 262 :FFDEKRVLTLSVYLED T0384 220 :YQVHIKAGKNIT 1a5z 283 :DLCISVPVTLGK T0384 252 :HIR 1a5z 297 :GVE T0384 263 :GNQVQLPIQQAPHTMTEEVAAFAHMIQQ 1a5z 301 :RILELNLNEEELEAFRKSASILKNAINE Number of specific fragments extracted= 13 number of extra gaps= 0 total=2072 Number of alignments=135 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1obbA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1obbA expands to /projects/compbio/data/pdb/1obb.pdb.gz 1obbA:Skipped atom 3514, because occupancy 0.500 <= existing 0.500 in 1obbA Skipped atom 3516, because occupancy 0.500 <= existing 0.500 in 1obbA Skipped atom 3518, because occupancy 0.500 <= existing 0.500 in 1obbA Skipped atom 3520, because occupancy 0.500 <= existing 0.500 in 1obbA Skipped atom 3522, because occupancy 0.500 <= existing 0.500 in 1obbA Skipped atom 3524, because occupancy 0.500 <= existing 0.500 in 1obbA Skipped atom 3526, because occupancy 0.500 <= existing 0.500 in 1obbA Skipped atom 3528, because occupancy 0.500 <= existing 0.500 in 1obbA Skipped atom 3530, because occupancy 0.500 <= existing 0.500 in 1obbA Skipped atom 3532, because occupancy 0.500 <= existing 0.500 in 1obbA Skipped atom 3534, because occupancy 0.500 <= existing 0.500 in 1obbA # T0384 read from 1obbA/merged-good-all-a2m # 1obbA read from 1obbA/merged-good-all-a2m # adding 1obbA to template set # found chain 1obbA in template set Warning: unaligning (T0384)Y150 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1obbA)H175 Warning: unaligning (T0384)S152 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1obbA)H175 T0384 2 :LKLGVIGTGAISH 1obbA 4 :VKIGIIGAGSAVF T0384 15 :HFIEAAHTSG 1obbA 19 :RLVSDLCKTP T0384 25 :EYQLV 1obbA 32 :GSTVT T0384 31 :IYSRKLET 1obbA 37 :LMDIDEER T0384 39 :AATFASRYQ 1obbA 52 :AKKYVEEVG T0384 48 :NIQLFDQL 1obbA 64 :KFEKTMNL T0384 56 :EVF 1obbA 73 :DVI T0384 61 :SSFDLVYIASPN 1obbA 76 :IDADFVINTAMV T0384 73 :SLHFAQAKAALSAGK 1obbA 91 :TYLEKVRQIGEKYGY T0384 93 :KPAVSQPQE 1obbA 120 :YYTFSNYNQ T0384 102 :WFDLIQTAEK 1obbA 132 :FVDIARKIEK T0384 112 :NNCFIFEAARNYHEKAFTTIKN 1obbA 144 :PKAWYLQAANPIFEGTTLVTRT T0384 141 :L 1obbA 166 :V T0384 144 :DFNYAK 1obbA 167 :PIKAVG T0384 179 :GIYPLYAAVRLFG 1obbA 176 :GHYGVMEIVEKLG T0384 192 :KANDATYHAQQL 1obbA 190 :EEEKVDWQVAGV T0384 206 :SIDLNGDGILFYPDY 1obbA 366 :DNKARFVVNIPNKGI T0384 228 :KNITSNLPCEIY 1obbA 382 :HGIDDDVVVEVP T0384 245 :LTLNT 1obbA 394 :ALVDK T0384 261 :HQGNQVQLPIQQAPH 1obbA 399 :NGIHPEKIEPPLPDR T0384 276 :TMTEEVAAFAHMIQQP 1obbA 421 :PRIMRMEMALEAFLTG T0384 299 :WLYDAGSVH 1obbA 437 :DIRIIKELL T0384 308 :ELLYTMR 1obbA 459 :KVIEEIL Number of specific fragments extracted= 23 number of extra gaps= 0 total=2095 Number of alignments=136 # 1obbA read from 1obbA/merged-good-all-a2m # found chain 1obbA in template set Warning: unaligning (T0384)A119 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1obbA)H175 Warning: unaligning (T0384)Y123 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1obbA)H175 T0384 1 :M 1obbA 2 :P T0384 2 :LKLGVIGTG 1obbA 4 :VKIGIIGAG T0384 11 :AISHHFIEAAHTSG 1obbA 15 :VFSLRLVSDLCKTP T0384 25 :EYQLV 1obbA 32 :GSTVT T0384 31 :IYSRKLET 1obbA 37 :LMDIDEER T0384 39 :AATFASRYQNI 1obbA 52 :AKKYVEEVGAD T0384 50 :QLFDQLEVFFK 1obbA 66 :EKTMNLDDVII T0384 62 :SFDLVYIASPNSLH 1obbA 77 :DADFVINTAMVGGH T0384 76 :FAQAKAALSA 1obbA 133 :VDIARKIEKL T0384 86 :GKHVIL 1obbA 145 :KAWYLQ T0384 95 :AVSQPQEWFDLI 1obbA 151 :AANPIFEGTTLV T0384 109 :AEKNNCFIFE 1obbA 163 :TRTVPIKAVG T0384 124 :HEKAFTTIKNFL 1obbA 176 :GHYGVMEIVEKL T0384 136 :ADKQVL 1obbA 189 :LEEEKV T0384 142 :GADFNYAKYSSK 1obbA 204 :GIWLNRFRYNGG T0384 154 :MPDLLAG 1obbA 347 :DPERKSG T0384 180 :IYPLYAAVRLFGKANDATYHAQQLDN 1obbA 354 :EQHIPFIDALLNDNKARFVVNIPNKG T0384 206 :SIDLNGDGILFY 1obbA 383 :GIDDDVVVEVPA T0384 257 :IFTDHQGNQVQLPIQQAP 1obbA 395 :LVDKNGIHPEKIEPPLPD T0384 275 :HTMTEEVAAFAHMIQQPD 1obbA 420 :RPRIMRMEMALEAFLTGD T0384 300 :LYDAGSVHE 1obbA 438 :IRIIKELLY T0384 309 :LLYTMRQTA 1obbA 456 :QVEKVIEEI Number of specific fragments extracted= 22 number of extra gaps= 0 total=2117 Number of alignments=137 # 1obbA read from 1obbA/merged-good-all-a2m # found chain 1obbA in template set Warning: unaligning (T0384)H199 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1obbA)H175 Warning: unaligning (T0384)Q201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1obbA)H175 T0384 2 :LKLGVIGTGAISH 1obbA 4 :VKIGIIGAGSAVF T0384 15 :HFIEAAHTSGE 1obbA 19 :RLVSDLCKTPG T0384 26 :YQLV 1obbA 33 :STVT T0384 31 :IYSRKLETAATFA 1obbA 37 :LMDIDEERLDAIL T0384 44 :SRYQN 1obbA 57 :EEVGA T0384 49 :IQLFDQLEVFF 1obbA 65 :FEKTMNLDDVI T0384 62 :SFDLVYIASPNSL 1obbA 77 :DADFVINTAMVGG T0384 99 :PQEWFDLIQTAEKNNCFIFEAARNYH 1obbA 90 :HTYLEKVRQIGEKYGYYRGIDAQEFN T0384 126 :KAFTTIKNFLAD 1obbA 130 :KYFVDIARKIEK T0384 168 :DRFAGGALMDLGIYPLYAAVRLFGKANDATY 1obbA 142 :LSPKAWYLQAANPIFEGTTLVTRTVPIKAVG T0384 202 :QL 1obbA 176 :GH T0384 204 :DNSIDLNGDGIL 1obbA 190 :EEEKVDWQVAGV T0384 234 :LPCEIYTTDGT 1obbA 206 :WLNRFRYNGGN T0384 263 :GNQVQLPIQQAPHTMTEEVAAFAHMIQQP 1obbA 408 :PPLPDRVVKYYLRPRIMRMEMALEAFLTG Number of specific fragments extracted= 14 number of extra gaps= 0 total=2131 Number of alignments=138 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q0qA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1q0qA expands to /projects/compbio/data/pdb/1q0q.pdb.gz 1q0qA:# T0384 read from 1q0qA/merged-good-all-a2m # 1q0qA read from 1q0qA/merged-good-all-a2m # adding 1q0qA to template set # found chain 1q0qA in template set Warning: unaligning (T0384)L4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1q0qA)T5 Warning: unaligning (T0384)G5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1q0qA)T5 Warning: unaligning (T0384)S151 because of BadResidue code BAD_PEPTIDE in next template residue (1q0qA)G185 Warning: unaligning (T0384)S152 because of BadResidue code BAD_PEPTIDE at template residue (1q0qA)G185 Warning: unaligning (T0384)K153 because of BadResidue code BAD_PEPTIDE at template residue (1q0qA)S186 T0384 1 :MLK 1q0qA 1 :MKQ T0384 6 :VIG 1q0qA 6 :ILG T0384 9 :TGAISHHFIEAAHTSGE 1q0qA 10 :TGSIGCSTLDVVRHNPE T0384 26 :YQLVAIYSRK 1q0qA 28 :FRVVALVAGK T0384 36 :LETAATFASRYQ 1q0qA 39 :VTRMVEQCLEFS T0384 48 :NIQLFDQ 1q0qA 75 :RTEVLSG T0384 55 :L 1q0qA 85 :A T0384 56 :EVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVIL 1q0qA 87 :DMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILL T0384 103 :FDLIQTAEKNNCFIFEAA 1q0qA 133 :RLFMDAVKQSKAQLLPVD T0384 126 :KAFTTIKNF 1q0qA 151 :SEHNAIFQS T0384 135 :LADK 1q0qA 164 :IQHN T0384 141 :LG 1q0qA 168 :LG T0384 145 :FNYAKY 1q0qA 178 :VVSILL T0384 154 :MPDLLAGQT 1q0qA 187 :GGPFRETPL T0384 163 :PNVFSDRF 1q0qA 211 :NWSMGRKI T0384 171 :AGGALMDLGIYPL 1q0qA 221 :DSATMMNKGLEYI T0384 185 :AAVRLFG 1q0qA 234 :EARWLFN T0384 192 :KANDATYHAQQ 1q0qA 242 :SASQMEVLIHP T0384 208 :DLNGDGILFYPDYQVHIKA 1q0qA 253 :QSVIHSMVRYQDGSVLAQL T0384 247 :LNTI 1q0qA 272 :GEPD T0384 251 :EHIRSAIFTDHQGNQVQLPIQQAPHTMTEEVAAFAHMIQQ 1q0qA 288 :NRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQ T0384 299 :WLYDAGSVHELLYTMRQTAGIRF 1q0qA 328 :GQAATTALNAANEITVAAFLAQQ Number of specific fragments extracted= 22 number of extra gaps= 2 total=2153 Number of alignments=139 # 1q0qA read from 1q0qA/merged-good-all-a2m # found chain 1q0qA in template set Warning: unaligning (T0384)L4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1q0qA)T5 Warning: unaligning (T0384)G5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1q0qA)T5 Warning: unaligning (T0384)K149 because of BadResidue code BAD_PEPTIDE in next template residue (1q0qA)G185 Warning: unaligning (T0384)Y150 because of BadResidue code BAD_PEPTIDE at template residue (1q0qA)G185 Warning: unaligning (T0384)S151 because of BadResidue code BAD_PEPTIDE at template residue (1q0qA)S186 T0384 1 :MLK 1q0qA 1 :MKQ T0384 6 :VIG 1q0qA 6 :ILG T0384 9 :TGAISHHFIEAAHTS 1q0qA 10 :TGSIGCSTLDVVRHN T0384 24 :GEYQLVAIYSR 1q0qA 26 :EHFRVVALVAG T0384 35 :KLETAATFASRYQNI 1q0qA 38 :NVTRMVEQCLEFSPR T0384 50 :QLFDQ 1q0qA 77 :EVLSG T0384 55 :LEVFFKS 1q0qA 85 :ACDMAAL T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILE 1q0qA 93 :DVDQVMAAIVGAAGLLPTLAAIRAGKTILLA T0384 103 :FDLIQTAEKNNCFIFEA 1q0qA 133 :RLFMDAVKQSKAQLLPV T0384 125 :EKAFTTIKNF 1q0qA 150 :DSEHNAIFQS T0384 135 :L 1q0qA 164 :I T0384 137 :D 1q0qA 165 :Q T0384 139 :QVL 1q0qA 166 :HNL T0384 142 :GADFNYA 1q0qA 177 :GVVSILL T0384 152 :SK 1q0qA 187 :GG T0384 154 :MPDLLAGQTPNVFSDRF 1q0qA 202 :TPDQACRHPNWSMGRKI T0384 171 :AGGALMDLGIYPLY 1q0qA 221 :DSATMMNKGLEYIE T0384 186 :AVRLFG 1q0qA 235 :ARWLFN T0384 192 :KANDATYHAQQ 1q0qA 242 :SASQMEVLIHP T0384 208 :DLNGDGILFYPDYQVHIKAGKN 1q0qA 253 :QSVIHSMVRYQDGSVLAQLGEP T0384 256 :AIFTDHQGNQVQLPIQQAPHTMTEEVAAFAHMIQQPD 1q0qA 293 :GVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQ T0384 301 :YDAGSVHELLYTMRQTAGIR 1q0qA 330 :AATTALNAANEITVAAFLAQ Number of specific fragments extracted= 22 number of extra gaps= 2 total=2175 Number of alignments=140 # 1q0qA read from 1q0qA/merged-good-all-a2m # found chain 1q0qA in template set Warning: unaligning (T0384)L4 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1q0qA)T5 Warning: unaligning (T0384)G5 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1q0qA)T5 Warning: unaligning (T0384)K149 because of BadResidue code BAD_PEPTIDE in next template residue (1q0qA)G185 Warning: unaligning (T0384)Y150 because of BadResidue code BAD_PEPTIDE at template residue (1q0qA)G185 Warning: unaligning (T0384)S151 because of BadResidue code BAD_PEPTIDE at template residue (1q0qA)S186 T0384 1 :MLK 1q0qA 1 :MKQ T0384 6 :VIGT 1q0qA 6 :ILGS T0384 10 :GAISHHFIEAAHTSGE 1q0qA 11 :GSIGCSTLDVVRHNPE T0384 26 :YQLVAIYSRK 1q0qA 28 :FRVVALVAGK T0384 36 :LETAATFASRY 1q0qA 39 :VTRMVEQCLEF T0384 47 :QN 1q0qA 73 :GS T0384 49 :IQLFDQ 1q0qA 76 :TEVLSG T0384 55 :LEVFF 1q0qA 85 :ACDMA T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGKHVIL 1q0qA 91 :LEDVDQVMAAIVGAAGLLPTLAAIRAGKTILL T0384 105 :LIQTAEKNNCFIFEAAR 1q0qA 135 :FMDAVKQSKAQLLPVDS T0384 127 :AFTTIK 1q0qA 152 :EHNAIF T0384 133 :NFLAD 1q0qA 163 :PIQHN T0384 140 :VL 1q0qA 168 :LG T0384 142 :GADFNYA 1q0qA 177 :GVVSILL T0384 152 :SKMPDLLAGQTP 1q0qA 187 :GGPFRETPLRDL T0384 168 :DRFAG 1q0qA 212 :WSMGR T0384 173 :GALMDLGIYPLY 1q0qA 223 :ATMMNKGLEYIE T0384 186 :AVRLFGKANDATYHAQQL 1q0qA 235 :ARWLFNASASQMEVLIHP T0384 208 :DLNGDGILFYPDYQVHIKAGKNIT 1q0qA 253 :QSVIHSMVRYQDGSVLAQLGEPDM T0384 250 :IEHIRSAIFTDH 1q0qA 287 :PNRVNSGVKPLD T0384 263 :GNQVQLPIQQAPHTMTEEVAAFAHMIQQP 1q0qA 300 :CKLSALTFAAPDYDRYPCLKLAMEAFEQG T0384 298 :TWLYDAGSVHELLYTMRQ 1q0qA 329 :QAATTALNAANEITVAAF Number of specific fragments extracted= 22 number of extra gaps= 2 total=2197 Number of alignments=141 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ofgA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ofgA expands to /projects/compbio/data/pdb/1ofg.pdb.gz 1ofgA:# T0384 read from 1ofgA/merged-good-all-a2m # 1ofgA read from 1ofgA/merged-good-all-a2m # adding 1ofgA to template set # found chain 1ofgA in template set T0384 1 :MLKLGVIGTGAISH 1ofgA 31 :RFGYAIVGLGKYAL T0384 15 :HFIEAAHTSGEYQLVAIYSRKLETAATFASRYQ 1ofgA 46 :QILPGFAGCQHSRIEALVSGNAEKAKIVAAEYG T0384 48 :NIQLFDQL 1ofgA 83 :KIYDYSNF T0384 56 :EVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQ 1ofgA 92 :KIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQ T0384 141 :LG 1ofgA 176 :LG T0384 144 :DFNYAKYSSK 1ofgA 178 :KLGMVTTDNS T0384 155 :PDLLAGQ 1ofgA 188 :DVMDQND T0384 163 :P 1ofgA 195 :P T0384 164 :NVFSDRF 1ofgA 199 :WRLRREL T0384 171 :AGGALMDLGIYPLYAAVRLFG 1ofgA 207 :GGGSLMDIGIYGLNGTRYLLG T0384 192 :KANDATYHAQQLDN 1ofgA 229 :EPIEVRAYTYSDPN T0384 206 :SIDLNGDGILFYPDY 1ofgA 248 :EVEDRIIWQMRFRSG T0384 221 :QVHIKAGKNITSNLPCEIYTTDGTLTLNTI 1ofgA 264 :LSHGASSYSTTTTSRFSVQGDKAVLLMDPA T0384 251 :EHIRSAIFTDHQGNQVQLPIQQAPH 1ofgA 297 :YQNLISVQTPGHANQSMMPQFIMPA T0384 276 :TMTEEVAAFAHMIQQPDLNLY 1ofgA 324 :QFSAQLDHLAEAVINNKPVRS T0384 299 :WLYDAGSVHELLYTMRQTAGIRFEAE 1ofgA 345 :PGEEGMQDVRLIQAIYEAARTGRPVN Number of specific fragments extracted= 16 number of extra gaps= 0 total=2213 Number of alignments=142 # 1ofgA read from 1ofgA/merged-good-all-a2m # found chain 1ofgA in template set T0384 2 :LKLGVIGTGAISH 1ofgA 32 :FGYAIVGLGKYAL T0384 15 :HFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNI 1ofgA 46 :QILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD T0384 50 :QLFDQLEVFFKS 1ofgA 85 :YDYSNFDKIAKD T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFL 1ofgA 98 :KIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLI T0384 137 :DKQVLG 1ofgA 172 :RENQLG T0384 143 :ADFNYAKYSSKM 1ofgA 179 :LGMVTTDNSDVM T0384 158 :LAGQT 1ofgA 191 :DQNDP T0384 163 :PNVFSDRF 1ofgA 198 :QWRLRREL T0384 171 :AGGALMDLGIYPLYAAVRLFG 1ofgA 207 :GGGSLMDIGIYGLNGTRYLLG T0384 192 :KANDATYHAQQLDN 1ofgA 229 :EPIEVRAYTYSDPN T0384 206 :SIDLNGDGILFYPDYQ 1ofgA 248 :EVEDRIIWQMRFRSGA T0384 222 :VHIKAGKNITSNLPCEIYTTDGTLTLNTIEHIRS 1ofgA 265 :SHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQ T0384 256 :AIFTDHQGNQVQLPIQQAP 1ofgA 301 :ISVQTPGHANQSMMPQFIM T0384 275 :HTMTEEVAAFAHMIQQPD 1ofgA 323 :NQFSAQLDHLAEAVINNK T0384 295 :LYQTWLYDAGSVHELLYTMRQTAGIRFEAE 1ofgA 341 :PVRSPGEEGMQDVRLIQAIYEAARTGRPVN Number of specific fragments extracted= 15 number of extra gaps= 0 total=2228 Number of alignments=143 # 1ofgA read from 1ofgA/merged-good-all-a2m # found chain 1ofgA in template set T0384 1 :MLKLGVIGTGAISH 1ofgA 31 :RFGYAIVGLGKYAL T0384 15 :HFIEAAHTSGEYQLVAIYSRKLETAATFASRYQN 1ofgA 46 :QILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGV T0384 49 :IQLFDQLEVFF 1ofgA 84 :IYDYSNFDKIA T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQVLGADFNYAKYSSKMPDLLAGQTPNVFSDRFAGGALMDLGIYPLYAAVRLFGKANDATYHAQQL 1ofgA 96 :DPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYS T0384 204 :DNSIDLNGDGILFYPDYQVHIKAGKNIT 1ofgA 246 :FVEVEDRIIWQMRFRSGALSHGASSYST T0384 232 :SNLPCEIYTTDGTLTLNTIEHIRSAIFTDHQ 1ofgA 275 :TTSRFSVQGDKAVLLMDPATGYYQNLISVQT T0384 263 :GNQVQLPIQQAPHTMTEEVAAFAHMIQQPDLNLYQTWLYDAGSVHELLYTMRQTAGIRFEAE 1ofgA 311 :QSMMPQFIMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTD Number of specific fragments extracted= 7 number of extra gaps= 0 total=2235 Number of alignments=144 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tltA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1tltA expands to /projects/compbio/data/pdb/1tlt.pdb.gz 1tltA:# T0384 read from 1tltA/merged-good-all-a2m # 1tltA read from 1tltA/merged-good-all-a2m # adding 1tltA to template set # found chain 1tltA in template set Warning: unaligning (T0384)K93 because of BadResidue code BAD_PEPTIDE in next template residue (1tltA)P97 Warning: unaligning (T0384)P94 because of BadResidue code BAD_PEPTIDE at template residue (1tltA)P97 Warning: unaligning (T0384)I319 because last residue in template chain is (1tltA)S308 T0384 1 :MLKLGVIGTGAISH 1tltA 5 :KLRIGVVGLGGIAQ T0384 15 :HFIEAAHTSGEYQLVAIYSRKLETAATFASRYQ 1tltA 20 :AWLPVLAAASDWTLQGAWSPTRAKALPICESWR T0384 49 :IQLFDQLEVFF 1tltA 53 :IPYADSLSSLA T0384 61 :SSFDLVYIASPNSLHFAQAKAALSAGKHVILE 1tltA 64 :ASCDAVFVHSSTASHFDVVSTLLNAGVHVCVD T0384 95 :AVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKN 1tltA 98 :LAENLRDAERLVELAARKKLTLMVGFNRRFAPLYGELKT T0384 140 :VLG 1tltA 137 :QLA T0384 144 :DFNYAKYSSKMPDLLAGQ 1tltA 140 :TAASLRMDKHRSNSVGPH T0384 163 :P 1tltA 158 :D T0384 174 :ALMDLGIYPLYAAVRLFG 1tltA 162 :TLLDDYLHVVDTALWLSG T0384 192 :KANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNITSN 1tltA 181 :KASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAGSQ T0384 234 :LPCEIYTTDGTLTLNTIE 1tltA 224 :ETVQAVTDGALIDITDMR T0384 256 :AIFTDHQGNQVQLPIQQAPH 1tltA 242 :EWREERGQGVVHKPIPGWQS T0384 276 :TMTEEVAAFAHMIQQPDLNLY 1tltA 267 :GFVGCARHFIECVQNQTVPQT T0384 299 :WLYDAGSVHELLYTMRQTAG 1tltA 288 :AGEQAVLAQRIVDKIWRDAM Number of specific fragments extracted= 14 number of extra gaps= 1 total=2249 Number of alignments=145 # 1tltA read from 1tltA/merged-good-all-a2m # found chain 1tltA in template set Warning: unaligning (T0384)K93 because of BadResidue code BAD_PEPTIDE in next template residue (1tltA)P97 Warning: unaligning (T0384)P94 because of BadResidue code BAD_PEPTIDE at template residue (1tltA)P97 Warning: unaligning (T0384)I319 because last residue in template chain is (1tltA)S308 T0384 1 :MLKLGVIGTGAISH 1tltA 5 :KLRIGVVGLGGIAQ T0384 15 :HFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNI 1tltA 20 :AWLPVLAAASDWTLQGAWSPTRAKALPICESWRIP T0384 51 :LFDQLEVFFK 1tltA 55 :YADSLSSLAA T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILE 1tltA 65 :SCDAVFVHSSTASHFDVVSTLLNAGVHVCVD T0384 95 :AVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFL 1tltA 98 :LAENLRDAERLVELAARKKLTLMVGFNRRFAPLYGELKTQL T0384 142 :G 1tltA 139 :A T0384 143 :ADFNYAKYSSKMPDLLAG 1tltA 141 :AASLRMDKHRSNSVGPHD T0384 171 :AGGALMDLGIYPLYAAVRLFG 1tltA 159 :LYFTLLDDYLHVVDTALWLSG T0384 192 :KANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNITSN 1tltA 181 :KASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAGSQ T0384 234 :LPCEIYTTDGTLTLNTIEH 1tltA 224 :ETVQAVTDGALIDITDMRE T0384 257 :IFTDHQGNQVQLPIQQAP 1tltA 243 :WREERGQGVVHKPIPGWQ T0384 275 :HTMTEEVAAFAHMIQQPD 1tltA 266 :RGFVGCARHFIECVQNQT T0384 295 :LYQTWLYDAGSVHELLYTMRQTAG 1tltA 284 :VPQTAGEQAVLAQRIVDKIWRDAM Number of specific fragments extracted= 13 number of extra gaps= 1 total=2262 Number of alignments=146 # 1tltA read from 1tltA/merged-good-all-a2m # found chain 1tltA in template set Warning: unaligning (T0384)K93 because of BadResidue code BAD_PEPTIDE in next template residue (1tltA)P97 Warning: unaligning (T0384)P94 because of BadResidue code BAD_PEPTIDE at template residue (1tltA)P97 T0384 1 :MLKLGVIGTGAISH 1tltA 5 :KLRIGVVGLGGIAQ T0384 15 :HFIEAAHTSGEYQLVAIYSRKLETAATFASRYQN 1tltA 20 :AWLPVLAAASDWTLQGAWSPTRAKALPICESWRI T0384 50 :QLFDQLEVFF 1tltA 54 :PYADSLSSLA T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILE 1tltA 65 :SCDAVFVHSSTASHFDVVSTLLNAGVHVCVD T0384 95 :AVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNF 1tltA 98 :LAENLRDAERLVELAARKKLTLMVGFNRRFAPLYGELKTQ T0384 140 :VLGADFNYAKYSSKMPDLLAGQ 1tltA 138 :LATAASLRMDKHRSNSVGPHDL T0384 172 :GGALMDLGIYPLYAAVRLFGKANDATYHAQQL 1tltA 160 :YFTLLDDYLHVVDTALWLSGGKASLDGGTLLT T0384 204 :DNSIDLNGDGILFYPDYQVHIKAGKNIT 1tltA 193 :DAGEMLFAEHHFSAGPLQITTCMHRRAG T0384 232 :SNLPCEIYTTDGTLTLNTIEHIRSAIFTDHQ 1tltA 222 :QRETVQAVTDGALIDITDMREWREERGQGVV T0384 263 :GNQVQLPIQQAPHTMTEEVAAFAHMIQQPDLNLYQTWLYDAGSVHELLYTMRQT 1tltA 254 :KPIPGWQSTLEQRGFVGCARHFIECVQNQTVPQTAGEQAVLAQRIVDKIWRDAM Number of specific fragments extracted= 10 number of extra gaps= 1 total=2272 Number of alignments=147 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1evjA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1evjA expands to /projects/compbio/data/pdb/1evj.pdb.gz 1evjA:# T0384 read from 1evjA/merged-good-all-a2m # 1evjA read from 1evjA/merged-good-all-a2m # adding 1evjA to template set # found chain 1evjA in template set Warning: unaligning (T0384)D260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1evjA)M319 Warning: unaligning (T0384)A273 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1evjA)M319 T0384 1 :MLKLGVIGTGAISH 1evjA 31 :RFGYAIVGLGKYAL T0384 15 :HFIEAAHTSGEYQLVAIYSRKLETAATFASRYQ 1evjA 46 :QILPGFAGCQHSRIEALVDGNAEKAKIVAAEYG T0384 48 :NIQLFDQLEVFFK 1evjA 83 :KIYDYSNFDKIAK T0384 61 :SSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQ 1evjA 97 :PKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQ T0384 141 :LG 1evjA 176 :LG T0384 144 :DFNYAKYSSK 1evjA 178 :KLGMVTTDNS T0384 154 :MPDLLAGQ 1evjA 190 :MDQNDPAQ T0384 163 :PNVFSDRF 1evjA 198 :QWRLRREL T0384 171 :AGGALMDLGIYPLYAAVRLFG 1evjA 207 :GGGSLMDIGIYGLNGTRYLLG T0384 192 :KANDATYHAQQLDN 1evjA 229 :EPIEVRAYTYSDPN T0384 206 :SIDLNGDGILFYPDY 1evjA 248 :EVEDRIIWQMRFRSG T0384 221 :QVHIKAGKNITSNLPCEIYTTDGTLTLNTI 1evjA 264 :LSHGASSYSTTTTSRFSVQGDKAVLLMDPA T0384 251 :EHIRSAIFT 1evjA 297 :YQNLISVQT T0384 274 :PH 1evjA 320 :PA T0384 276 :TMTEEVAAFAHMIQQPDLNLY 1evjA 324 :QFSAQLDHLAEAVINNKPVRS T0384 299 :WLYDAGSVHELLYTMRQTAGIRFEAE 1evjA 345 :PGEEGMQDVRLIQAIYEAARTGRPVN Number of specific fragments extracted= 16 number of extra gaps= 0 total=2288 Number of alignments=148 # 1evjA read from 1evjA/merged-good-all-a2m # found chain 1evjA in template set Warning: unaligning (T0384)D260 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1evjA)M319 Warning: unaligning (T0384)A273 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1evjA)M319 T0384 1 :MLKLGVIGTGAISH 1evjA 31 :RFGYAIVGLGKYAL T0384 15 :HFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNI 1evjA 46 :QILPGFAGCQHSRIEALVDGNAEKAKIVAAEYGVD T0384 50 :QLFDQLEVFFKS 1evjA 85 :YDYSNFDKIAKD T0384 62 :SFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFL 1evjA 98 :KIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLI T0384 137 :DKQVLG 1evjA 172 :RENQLG T0384 143 :ADFNYAKYSSKMPDLLAGQT 1evjA 179 :LGMVTTDNSDVMDQNDPAQQ T0384 164 :NVFSDRF 1evjA 199 :WRLRREL T0384 171 :AGGALMDLGIYPLYAAVRLFG 1evjA 207 :GGGSLMDIGIYGLNGTRYLLG T0384 192 :KANDATYHAQQLDN 1evjA 229 :EPIEVRAYTYSDPN T0384 206 :SIDLNGDGILFYPDYQ 1evjA 248 :EVEDRIIWQMRFRSGA T0384 222 :VHIKAGKNITSNLPCEIYTTDGTLTLNTIEHIRS 1evjA 265 :SHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQ T0384 256 :AIFT 1evjA 302 :SVQT T0384 274 :P 1evjA 320 :P T0384 275 :HTMTEEVAAFAHMIQQPD 1evjA 323 :NQFSAQLDHLAEAVINNK T0384 295 :LYQTWLYDAGSVHELLYTMRQTAGIRFEAE 1evjA 341 :PVRSPGEEGMQDVRLIQAIYEAARTGRPVN Number of specific fragments extracted= 15 number of extra gaps= 0 total=2303 Number of alignments=149 # 1evjA read from 1evjA/merged-good-all-a2m # found chain 1evjA in template set Warning: unaligning (T0384)Q271 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1evjA)M319 T0384 1 :MLKLGVIGTGAISH 1evjA 31 :RFGYAIVGLGKYAL T0384 15 :HFIEAAHTSGEYQLVAIYSRKLETAATFASRYQN 1evjA 46 :QILPGFAGCQHSRIEALVDGNAEKAKIVAAEYGV T0384 49 :IQLFDQLEVFF 1evjA 84 :IYDYSNFDKIA T0384 60 :KSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQVLGADFNYAKYSSKMPDLLAGQTPNVFSDRFAGGALMDLGIYPLYAAVRLFGKANDATYHAQQL 1evjA 96 :DPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYS T0384 204 :DNSIDLNGDGILFYPDYQVHIKAGKNIT 1evjA 246 :FVEVEDRIIWQMRFRSGALSHGASSYST T0384 232 :SNLPCEIYTTDGTLTLNTIEHIRSAIFTDHQ 1evjA 275 :TTSRFSVQGDKAVLLMDPATGYYQNLISVQT T0384 272 :QAPHTMTEEVAAFAHMIQQPDLNLYQTWLYDAGSVHELLYTMRQTAGIRFEAE 1evjA 320 :PANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTD Number of specific fragments extracted= 7 number of extra gaps= 0 total=2310 Number of alignments=150 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0384//projects/compbio/experiments/protein-predict/casp7/T0384/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0384//projects/compbio/experiments/protein-predict/casp7/T0384/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0384/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0384/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0384)V6.CB, (T0384)I31.CB) [> 3.0611 = 5.1019 < 6.6324] w=1.0000 to align # Constraint # added constraint: constraint((T0384)V6.CB, (T0384)I17.CB) [> 3.6511 = 6.0851 < 7.9106] w=0.9932 to align # Constraint # added constraint: constraint((T0384)G5.CA, (T0384)L65.CB) [> 4.1928 = 6.9879 < 9.0843] w=0.9927 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)I68.CB) [> 3.1875 = 5.3124 < 6.9062] w=0.9926 to align # Constraint # added constraint: constraint((T0384)T9.CB, (T0384)S33.CB) [> 2.8123 = 4.6872 < 6.0934] w=0.9858 to align # Constraint # added constraint: constraint((T0384)G5.CA, (T0384)V29.CB) [> 3.2685 = 5.4475 < 7.0817] w=0.9854 to align # Constraint # added constraint: constraint((T0384)G8.CA, (T0384)S70.CB) [> 2.9354 = 4.8923 < 6.3600] w=0.9838 to align # Constraint # added constraint: constraint((T0384)G8.CA, (T0384)A69.CB) [> 2.9657 = 4.9428 < 6.4256] w=0.9838 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)S70.CB) [> 3.5370 = 5.8949 < 7.6634] w=0.9838 to align # Constraint # added constraint: constraint((T0384)V6.CB, (T0384)Y32.CB) [> 4.1567 = 6.9279 < 9.0062] w=0.9786 to align # Constraint # added constraint: constraint((T0384)G8.CA, (T0384)Y32.CB) [> 3.6885 = 6.1476 < 7.9918] w=0.9782 to align # Constraint # added constraint: constraint((T0384)G5.CA, (T0384)I31.CB) [> 4.0997 = 6.8328 < 8.8827] w=0.9781 to align # Constraint # added constraint: constraint((T0384)L4.CB, (T0384)L65.CB) [> 3.1035 = 5.1726 < 6.7243] w=0.9717 to align # Constraint # added constraint: constraint((T0384)V6.CB, (T0384)F16.CB) [> 3.7393 = 6.2322 < 8.1019] w=0.9711 to align # Constraint # added constraint: constraint((T0384)G5.CA, (T0384)V66.CB) [> 3.1731 = 5.2885 < 6.8750] w=0.9707 to align # Constraint # added constraint: constraint((T0384)V6.CB, (T0384)Y67.CB) [> 2.9773 = 4.9621 < 6.4508] w=0.9707 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)V66.CB) [> 3.9064 = 6.5107 < 8.4639] w=0.9707 to align # Constraint # added constraint: constraint((T0384)F16.CB, (T0384)Y67.CB) [> 3.6545 = 6.0909 < 7.9182] w=0.9707 to align # Constraint # added constraint: constraint((T0384)S13.CB, (T0384)A69.CB) [> 2.6145 = 4.3575 < 5.6647] w=0.9696 to align # Constraint # added constraint: constraint((T0384)I12.CB, (T0384)A69.CB) [> 2.8757 = 4.7929 < 6.2308] w=0.9696 to align # Constraint # added constraint: constraint((T0384)L4.CB, (T0384)Y26.CB) [> 3.2892 = 5.4820 < 7.1266] w=0.9683 to align # Constraint # added constraint: constraint((T0384)V6.CB, (T0384)A69.CB) [> 3.9316 = 6.5528 < 8.5186] w=0.9666 to align # Constraint # added constraint: constraint((T0384)L4.CB, (T0384)V29.CB) [> 3.9655 = 6.6091 < 8.5918] w=0.9644 to align # Constraint # added constraint: constraint((T0384)L4.CB, (T0384)L28.CB) [> 3.3258 = 5.5430 < 7.2059] w=0.9644 to align # Constraint # added constraint: constraint((T0384)G8.CA, (T0384)S33.CB) [> 3.2218 = 5.3696 < 6.9805] w=0.9639 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)Y32.CB) [> 2.6279 = 4.3799 < 5.6939] w=0.9639 to align # Constraint # added constraint: constraint((T0384)V6.CB, (T0384)L28.CB) [> 3.9530 = 6.5884 < 8.5649] w=0.9625 to align # Constraint # added constraint: constraint((T0384)F16.CB, (T0384)A69.CB) [> 3.9888 = 6.6480 < 8.6424] w=0.9624 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)A69.CB) [> 4.0044 = 6.6740 < 8.6762] w=0.9624 to align # Constraint # added constraint: constraint((T0384)G5.CA, (T0384)Y67.CB) [> 3.7198 = 6.1996 < 8.0595] w=0.9488 to align # Constraint # added constraint: constraint((T0384)K3.CB, (T0384)V29.CB) [> 3.1803 = 5.3005 < 6.8907] w=0.9424 to align # Constraint # added constraint: constraint((T0384)K3.CB, (T0384)Q27.CB) [> 3.2580 = 5.4300 < 7.0589] w=0.9424 to align # Constraint # added constraint: constraint((T0384)G5.CA, (T0384)L28.CB) [> 3.8660 = 6.4433 < 8.3762] w=0.9406 to align # Constraint # added constraint: constraint((T0384)K3.CB, (T0384)S62.CB) [> 3.5102 = 5.8503 < 7.6054] w=0.9279 to align # Constraint # added constraint: constraint((T0384)L4.CB, (T0384)V66.CB) [> 4.4614 = 7.4356 < 9.6663] w=0.9278 to align # Constraint # added constraint: constraint((T0384)L4.CB, (T0384)Y67.CB) [> 3.7949 = 6.3249 < 8.2223] w=0.9278 to align # Constraint # added constraint: constraint((T0384)K3.CB, (T0384)D64.CB) [> 3.0869 = 5.1448 < 6.6882] w=0.9278 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)Y67.CB) [> 4.2055 = 7.0092 < 9.1120] w=0.9273 to align # Constraint # added constraint: constraint((T0384)G5.CA, (T0384)F63.CB) [> 2.9403 = 4.9005 < 6.3707] w=0.9271 to align # Constraint # added constraint: constraint((T0384)G10.CA, (T0384)A69.CB) [> 4.0035 = 6.6724 < 8.6742] w=0.9236 to align # Constraint # added constraint: constraint((T0384)L4.CB, (T0384)A20.CB) [> 3.7564 = 6.2607 < 8.1390] w=0.9213 to align # Constraint # added constraint: constraint((T0384)V66.CB, (T0384)I90.CB) [> 4.1809 = 6.9682 < 9.0586] w=0.9205 to align # Constraint # added constraint: constraint((T0384)V66.CB, (T0384)V89.CB) [> 3.1851 = 5.3085 < 6.9010] w=0.9205 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)I90.CB) [> 3.8712 = 6.4519 < 8.3875] w=0.9205 to align # Constraint # added constraint: constraint((T0384)L4.CB, (T0384)Q27.CB) [> 4.1223 = 6.8705 < 8.9317] w=0.9197 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)L91.CB) [> 3.0947 = 5.1579 < 6.7053] w=0.9132 to align # Constraint # added constraint: constraint((T0384)L4.CB, (T0384)F63.CB) [> 3.8674 = 6.4457 < 8.3795] w=0.9062 to align # Constraint # added constraint: constraint((T0384)K3.CB, (T0384)F63.CB) [> 2.9901 = 4.9835 < 6.4786] w=0.9061 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)H88.CB) [> 2.6790 = 4.4651 < 5.8046] w=0.8992 to align # Constraint # added constraint: constraint((T0384)T9.CB, (T0384)I31.CB) [> 3.1736 = 5.2894 < 6.8762] w=0.8986 to align # Constraint # added constraint: constraint((T0384)V29.CB, (T0384)F63.CB) [> 3.4147 = 5.6911 < 7.3985] w=0.8970 to align # Constraint # added constraint: constraint((T0384)D64.CB, (T0384)H88.CB) [> 3.9037 = 6.5062 < 8.4580] w=0.8841 to align # Constraint # added constraint: constraint((T0384)L4.CB, (T0384)D64.CB) [> 4.2294 = 7.0490 < 9.1636] w=0.8840 to align # Constraint # added constraint: constraint((T0384)I17.CB, (T0384)L28.CB) [> 3.7412 = 6.2353 < 8.1059] w=0.8761 to align # Constraint # added constraint: constraint((T0384)G8.CA, (T0384)I68.CB) [> 4.4563 = 7.4271 < 9.6552] w=0.8689 to align # Constraint # added constraint: constraint((T0384)L2.CB, (T0384)L65.CB) [> 3.7783 = 6.2971 < 8.1862] w=0.8593 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)K87.CB) [> 3.8859 = 6.4765 < 8.4195] w=0.8579 to align # Constraint # added constraint: constraint((T0384)V66.CB, (T0384)H88.CB) [> 4.2085 = 7.0142 < 9.1185] w=0.8553 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)I90.CB) [> 4.1222 = 6.8703 < 8.9314] w=0.8552 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)V89.CB) [> 4.1881 = 6.9801 < 9.0742] w=0.8552 to align # Constraint # added constraint: constraint((T0384)L2.CB, (T0384)Y26.CB) [> 3.1815 = 5.3025 < 6.8933] w=0.8520 to align # Constraint # added constraint: constraint((T0384)L91.CB, (T0384)F117.CB) [> 4.0161 = 6.6935 < 8.7015] w=0.8417 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)I90.CB) [> 3.0188 = 5.0313 < 6.5407] w=0.8385 to align # Constraint # added constraint: constraint((T0384)L2.CB, (T0384)D64.CB) [> 3.0330 = 5.0550 < 6.5715] w=0.8373 to align # Constraint # added constraint: constraint((T0384)D64.CB, (T0384)K87.CB) [> 3.6851 = 6.1418 < 7.9844] w=0.8356 to align # Constraint # added constraint: constraint((T0384)L91.CB, (T0384)I116.CB) [> 4.1319 = 6.8864 < 8.9524] w=0.8352 to align # Constraint # added constraint: constraint((T0384)L2.CB, (T0384)Q27.CB) [> 4.2482 = 7.0804 < 9.2045] w=0.8228 to align # Constraint # added constraint: constraint((T0384)V89.CB, (T0384)F115.CB) [> 3.9985 = 6.6641 < 8.6633] w=0.8195 to align # Constraint # added constraint: constraint((T0384)V66.CB, (T0384)A82.CB) [> 3.0666 = 5.1110 < 6.6444] w=0.8144 to align # Constraint # added constraint: constraint((T0384)V89.CB, (T0384)I116.CB) [> 3.1527 = 5.2546 < 6.8309] w=0.8124 to align # Constraint # added constraint: constraint((T0384)G5.CA, (T0384)Y32.CB) [> 4.2931 = 7.1552 < 9.3017] w=0.8046 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)V89.CB) [> 3.7325 = 6.2209 < 8.0872] w=0.7992 to align # Constraint # added constraint: constraint((T0384)K3.CB, (T0384)L65.CB) [> 4.4917 = 7.4862 < 9.7320] w=0.7944 to align # Constraint # added constraint: constraint((T0384)V6.CB, (T0384)A30.CB) [> 4.3005 = 7.1675 < 9.3178] w=0.7860 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)F117.CB) [> 3.2902 = 5.4837 < 7.1288] w=0.7834 to align # Constraint # added constraint: constraint((T0384)H88.CB, (T0384)F115.CB) [> 3.1057 = 5.1762 < 6.7291] w=0.7784 to align # Constraint # added constraint: constraint((T0384)V29.CB, (T0384)S62.CB) [> 3.8159 = 6.3599 < 8.2678] w=0.7779 to align # Constraint # added constraint: constraint((T0384)G5.CA, (T0384)A30.CB) [> 2.9690 = 4.9482 < 6.4327] w=0.7640 to align # Constraint # added constraint: constraint((T0384)A79.CB, (T0384)V89.CB) [> 3.6063 = 6.0104 < 7.8136] w=0.7580 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)E92.CB) [> 3.7296 = 6.2160 < 8.0808] w=0.7565 to align # Constraint # added constraint: constraint((T0384)L91.CB, (T0384)E118.CB) [> 3.2292 = 5.3821 < 6.9967] w=0.7534 to align # Constraint # added constraint: constraint((T0384)G8.CA, (T0384)I31.CB) [> 4.3547 = 7.2578 < 9.4351] w=0.7503 to align # Constraint # added constraint: constraint((T0384)F63.CB, (T0384)K87.CB) [> 3.8589 = 6.4314 < 8.3608] w=0.7417 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)L55.CB) [> 3.9086 = 6.5143 < 8.4686] w=0.7302 to align # Constraint # added constraint: constraint((T0384)T9.CB, (T0384)F42.CB) [> 3.4608 = 5.7680 < 7.4984] w=0.7252 to align # Constraint # added constraint: constraint((T0384)Y32.CB, (T0384)L55.CB) [> 3.6043 = 6.0072 < 7.8094] w=0.7235 to align # Constraint # added constraint: constraint((T0384)Y32.CB, (T0384)F52.CB) [> 3.4897 = 5.8162 < 7.5610] w=0.7150 to align # Constraint # added constraint: constraint((T0384)V66.CB, (T0384)K87.CB) [> 3.2786 = 5.4643 < 7.1036] w=0.7143 to align # Constraint # added constraint: constraint((T0384)K3.CB, (T0384)Y26.CB) [> 4.5225 = 7.5375 < 9.7987] w=0.7127 to align # Constraint # added constraint: constraint((T0384)I17.CB, (T0384)I31.CB) [> 4.1283 = 6.8804 < 8.9445] w=0.7037 to align # Constraint # added constraint: constraint((T0384)V89.CB, (T0384)F117.CB) [> 4.3113 = 7.1854 < 9.3411] w=0.7033 to align # Constraint # added constraint: constraint((T0384)T9.CB, (T0384)Y32.CB) [> 4.1582 = 6.9303 < 9.0094] w=0.6989 to align # Constraint # added constraint: constraint((T0384)H88.CB, (T0384)I116.CB) [> 4.4052 = 7.3420 < 9.5446] w=0.6987 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)A79.CB) [> 3.6714 = 6.1189 < 7.9546] w=0.6960 to align # Constraint # added constraint: constraint((T0384)L55.CB, (T0384)Q78.CB) [> 3.9952 = 6.6587 < 8.6563] w=0.6938 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)Q78.CB) [> 3.6062 = 6.0103 < 7.8134] w=0.6852 to align # Constraint # added constraint: constraint((T0384)L91.CB, (T0384)A119.CB) [> 4.0300 = 6.7167 < 8.7317] w=0.6818 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)Q78.CB) [> 3.7988 = 6.3313 < 8.2308] w=0.6803 to align # Constraint # added constraint: constraint((T0384)I12.CB, (T0384)E92.CB) [> 3.5687 = 5.9477 < 7.7321] w=0.6787 to align # Constraint # added constraint: constraint((T0384)A69.CB, (T0384)E92.CB) [> 2.8577 = 4.7628 < 6.1916] w=0.6653 to align # Constraint # added constraint: constraint((T0384)T9.CB, (T0384)A69.CB) [> 4.4623 = 7.4372 < 9.6684] w=0.6558 to align # Constraint # added constraint: constraint((T0384)Y32.CB, (T0384)L51.CB) [> 4.2011 = 7.0018 < 9.1023] w=0.6546 to align # Constraint # added constraint: constraint((T0384)I31.CB, (T0384)F42.CB) [> 3.6631 = 6.1051 < 7.9366] w=0.6464 to align # Constraint # added constraint: constraint((T0384)V6.CB, (T0384)V66.CB) [> 4.5478 = 7.5796 < 9.8535] w=0.6447 to align # Constraint # added constraint: constraint((T0384)I31.CB, (T0384)Q50.CB) [> 4.1558 = 6.9264 < 9.0043] w=0.6423 to align # Constraint # added constraint: constraint((T0384)Y32.CB, (T0384)F58.CB) [> 3.5085 = 5.8474 < 7.6017] w=0.6414 to align # Constraint # added constraint: constraint((T0384)H88.CB, (T0384)C114.CB) [> 3.7601 = 6.2668 < 8.1468] w=0.6391 to align # Constraint # added constraint: constraint((T0384)S13.CB, (T0384)I31.CB) [> 4.2778 = 7.1297 < 9.2686] w=0.6235 to align # Constraint # added constraint: constraint((T0384)F59.CB, (T0384)A85.CB) [> 3.2132 = 5.3552 < 6.9618] w=0.6217 to align # Constraint # added constraint: constraint((T0384)A30.CB, (T0384)F63.CB) [> 3.6991 = 6.1651 < 8.0146] w=0.6208 to align # Constraint # added constraint: constraint((T0384)S13.CB, (T0384)Y67.CB) [> 4.3145 = 7.1908 < 9.3480] w=0.6200 to align # Constraint # added constraint: constraint((T0384)E92.CB, (T0384)A119.CB) [> 3.3748 = 5.6246 < 7.3120] w=0.6166 to align # Constraint # added constraint: constraint((T0384)A79.CB, (T0384)L91.CB) [> 3.8788 = 6.4647 < 8.4041] w=0.6117 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)A119.CB) [> 3.6630 = 6.1050 < 7.9365] w=0.6018 to align # Constraint # added constraint: constraint((T0384)G5.CA, (T0384)F58.CB) [> 4.0411 = 6.7351 < 8.7556] w=0.5998 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)I31.CB) [> 4.2484 = 7.0807 < 9.2049] w=0.5895 to align # Constraint # added constraint: constraint((T0384)V89.CB, (T0384)C114.CB) [> 3.7717 = 6.2861 < 8.1719] w=0.5807 to align # Constraint # added constraint: constraint((T0384)I17.CB, (T0384)Y46.CB) [> 3.9103 = 6.5171 < 8.4722] w=0.5798 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)A82.CB) [> 4.1970 = 6.9950 < 9.0936] w=0.5701 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)F58.CB) [> 4.2028 = 7.0046 < 9.1060] w=0.5524 to align # Constraint # added constraint: constraint((T0384)A79.CB, (T0384)L105.CB) [> 3.3277 = 5.5461 < 7.2100] w=0.5472 to align # Constraint # added constraint: constraint((T0384)G86.CA, (T0384)C114.CB) [> 3.4299 = 5.7165 < 7.4314] w=0.5469 to align # Constraint # added constraint: constraint((T0384)G10.CA, (T0384)S33.CB) [> 4.3452 = 7.2420 < 9.4146] w=0.5428 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)E92.CB) [> 4.0320 = 6.7201 < 8.7361] w=0.5397 to align # Constraint # added constraint: constraint((T0384)L83.CB, (T0384)C114.CB) [> 3.2115 = 5.3526 < 6.9583] w=0.5253 to align # Constraint # added constraint: constraint((T0384)S13.CB, (T0384)S33.CB) [> 4.5467 = 7.5779 < 9.8513] w=0.5248 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)I116.CB) [> 4.0857 = 6.8096 < 8.8524] w=0.5171 to align # Constraint # added constraint: constraint((T0384)H75.CB, (T0384)S97.CB) [> 3.8497 = 6.4162 < 8.3411] w=0.5131 to align # Constraint # added constraint: constraint((T0384)I31.CB, (T0384)I49.CB) [> 3.4708 = 5.7847 < 7.5201] w=0.5131 to align # Constraint # added constraint: constraint((T0384)T9.CB, (T0384)A39.CB) [> 3.7331 = 6.2218 < 8.0883] w=0.5120 to align # Constraint # added constraint: constraint((T0384)G8.CA, (T0384)R34.CB) [> 4.5142 = 7.5237 < 9.7808] w=0.5092 to align # Constraint # added constraint: constraint((T0384)T9.CB, (T0384)T38.CB) [> 3.3771 = 5.6284 < 7.3170] w=0.5061 to align # Constraint # added constraint: constraint((T0384)V6.CB, (T0384)A20.CB) [> 4.3634 = 7.2724 < 9.4541] w=0.5039 to align # Constraint # added constraint: constraint((T0384)K3.CB, (T0384)L28.CB) [> 4.4556 = 7.4260 < 9.6537] w=0.4970 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)S33.CB) [> 4.1011 = 6.8352 < 8.8858] w=0.4956 to align # Constraint # added constraint: constraint((T0384)H75.CB, (T0384)L91.CB) [> 3.4699 = 5.7832 < 7.5182] w=0.4930 to align # Constraint # added constraint: constraint((T0384)H75.CB, (T0384)V96.CB) [> 3.3271 = 5.5451 < 7.2087] w=0.4916 to align # Constraint # added constraint: constraint((T0384)H88.CB, (T0384)F117.CB) [> 4.3719 = 7.2865 < 9.4725] w=0.4916 to align # Constraint # added constraint: constraint((T0384)S33.CB, (T0384)L51.CB) [> 3.7952 = 6.3253 < 8.2229] w=0.4879 to align # Constraint # added constraint: constraint((T0384)I17.CB, (T0384)F42.CB) [> 4.1118 = 6.8530 < 8.9089] w=0.4865 to align # Constraint # added constraint: constraint((T0384)I31.CB, (T0384)L51.CB) [> 3.4233 = 5.7055 < 7.4172] w=0.4787 to align # Constraint # added constraint: constraint((T0384)H14.CB, (T0384)F42.CB) [> 4.0724 = 6.7873 < 8.8234] w=0.4697 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)E118.CB) [> 4.3484 = 7.2473 < 9.4214] w=0.4668 to align # Constraint # added constraint: constraint((T0384)S33.CB, (T0384)F42.CB) [> 4.1834 = 6.9724 < 9.0641] w=0.4510 to align # Constraint # added constraint: constraint((T0384)K80.CB, (T0384)T108.CB) [> 3.5036 = 5.8394 < 7.5911] w=0.4455 to align # Constraint # added constraint: constraint((T0384)L83.CB, (T0384)T108.CB) [> 3.1345 = 5.2242 < 6.7914] w=0.4452 to align # Constraint # added constraint: constraint((T0384)F58.CB, (T0384)A82.CB) [> 4.0895 = 6.8159 < 8.8606] w=0.4447 to align # Constraint # added constraint: constraint((T0384)H75.CB, (T0384)A95.CB) [> 3.7900 = 6.3166 < 8.2116] w=0.4431 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)V89.CB) [> 4.6619 = 7.7698 < 10.1008] w=0.4342 to align # Constraint # added constraint: constraint((T0384)L83.CB, (T0384)A109.CB) [> 3.4051 = 5.6753 < 7.3778] w=0.4339 to align # Constraint # added constraint: constraint((T0384)E56.CB, (T0384)A81.CB) [> 3.5013 = 5.8355 < 7.5861] w=0.4290 to align # Constraint # added constraint: constraint((T0384)A95.CB, (T0384)E118.CB) [> 3.0952 = 5.1586 < 6.7062] w=0.4222 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)V96.CB) [> 3.5864 = 5.9774 < 7.7706] w=0.4215 to align # Constraint # added constraint: constraint((T0384)K93.CB, (T0384)E118.CB) [> 3.8649 = 6.4415 < 8.3740] w=0.4208 to align # Constraint # added constraint: constraint((T0384)F76.CB, (T0384)E101.CB) [> 3.1908 = 5.3179 < 6.9133] w=0.4180 to align # Constraint # added constraint: constraint((T0384)I106.CB, (T0384)I116.CB) [> 3.8120 = 6.3533 < 8.2593] w=0.4107 to align # Constraint # added constraint: constraint((T0384)L83.CB, (T0384)N112.CB) [> 3.0957 = 5.1595 < 6.7073] w=0.4047 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)L91.CB) [> 4.2019 = 7.0032 < 9.1042] w=0.4035 to align # Constraint # added constraint: constraint((T0384)L105.CB, (T0384)I116.CB) [> 3.8686 = 6.4477 < 8.3820] w=0.4030 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)G213.CA) [> 3.4348 = 5.7246 < 7.4420] w=0.3893 to align # Constraint # added constraint: constraint((T0384)I31.CB, (T0384)N48.CB) [> 3.6904 = 6.1507 < 7.9959] w=0.3880 to align # Constraint # added constraint: constraint((T0384)Y32.CB, (T0384)Q54.CB) [> 4.1755 = 6.9591 < 9.0469] w=0.3856 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)F216.CB) [> 3.4332 = 5.7220 < 7.4385] w=0.3833 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)L215.CB) [> 3.9409 = 6.5682 < 8.5387] w=0.3832 to align # Constraint # added constraint: constraint((T0384)F76.CB, (T0384)L105.CB) [> 3.6761 = 6.1268 < 7.9649] w=0.3795 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)P182.CB) [> 3.4503 = 5.7505 < 7.4756] w=0.3726 to align # Constraint # added constraint: constraint((T0384)K93.CB, (T0384)A119.CB) [> 3.9533 = 6.5888 < 8.5655] w=0.3705 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)G213.CA) [> 3.9296 = 6.5493 < 8.5141] w=0.3663 to align # Constraint # added constraint: constraint((T0384)E92.CB, (T0384)E118.CB) [> 4.1961 = 6.9935 < 9.0915] w=0.3627 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)F216.CB) [> 3.8809 = 6.4683 < 8.4087] w=0.3619 to align # Constraint # added constraint: constraint((T0384)K80.CB, (T0384)L105.CB) [> 3.8331 = 6.3886 < 8.3052] w=0.3614 to align # Constraint # added constraint: constraint((T0384)A30.CB, (T0384)F52.CB) [> 3.6482 = 6.0804 < 7.9045] w=0.3593 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)Y217.CB) [> 3.9810 = 6.6350 < 8.6254] w=0.3557 to align # Constraint # added constraint: constraint((T0384)S84.CB, (T0384)N112.CB) [> 3.8938 = 6.4896 < 8.4365] w=0.3540 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)L215.CB) [> 3.1579 = 5.2632 < 6.8422] w=0.3520 to align # Constraint # added constraint: constraint((T0384)I214.CB, (T0384)H223.CB) [> 3.4767 = 5.7944 < 7.5328] w=0.3520 to align # Constraint # added constraint: constraint((T0384)G213.CA, (T0384)I224.CB) [> 3.4002 = 5.6670 < 7.3671] w=0.3511 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)A82.CB) [> 4.3827 = 7.3045 < 9.4958] w=0.3506 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)L215.CB) [> 4.3833 = 7.3054 < 9.4971] w=0.3504 to align # Constraint # added constraint: constraint((T0384)Y198.CB, (T0384)G213.CA) [> 3.6630 = 6.1050 < 7.9365] w=0.3479 to align # Constraint # added constraint: constraint((T0384)G213.CA, (T0384)K225.CB) [> 3.9705 = 6.6175 < 8.6028] w=0.3465 to align # Constraint # added constraint: constraint((T0384)D212.CB, (T0384)K225.CB) [> 3.1951 = 5.3252 < 6.9228] w=0.3447 to align # Constraint # added constraint: constraint((T0384)F76.CB, (T0384)Q98.CB) [> 4.3614 = 7.2690 < 9.4497] w=0.3438 to align # Constraint # added constraint: constraint((T0384)L28.CB, (T0384)I49.CB) [> 3.6161 = 6.0268 < 7.8349] w=0.3434 to align # Constraint # added constraint: constraint((T0384)G211.CA, (T0384)A226.CB) [> 3.1934 = 5.3223 < 6.9190] w=0.3430 to align # Constraint # added constraint: constraint((T0384)N210.CB, (T0384)A226.CB) [> 3.8965 = 6.4942 < 8.4425] w=0.3430 to align # Constraint # added constraint: constraint((T0384)V6.CB, (T0384)V29.CB) [> 4.2714 = 7.1190 < 9.2548] w=0.3411 to align # Constraint # added constraint: constraint((T0384)P71.CB, (T0384)K93.CB) [> 3.9405 = 6.5675 < 8.5377] w=0.3361 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)L215.CB) [> 4.0604 = 6.7674 < 8.7976] w=0.3360 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)I214.CB) [> 4.3305 = 7.2175 < 9.3828] w=0.3318 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)L189.CB) [> 3.9617 = 6.6028 < 8.5837] w=0.3310 to align # Constraint # added constraint: constraint((T0384)G211.CA, (T0384)G227.CA) [> 3.8599 = 6.4332 < 8.3632] w=0.3300 to align # Constraint # added constraint: constraint((T0384)N210.CB, (T0384)G227.CA) [> 3.1189 = 5.1982 < 6.7577] w=0.3300 to align # Constraint # added constraint: constraint((T0384)A69.CB, (T0384)K93.CB) [> 4.1613 = 6.9354 < 9.0160] w=0.3288 to align # Constraint # added constraint: constraint((T0384)F59.CB, (T0384)A82.CB) [> 3.5808 = 5.9680 < 7.7584] w=0.3272 to align # Constraint # added constraint: constraint((T0384)K93.CB, (T0384)A120.CB) [> 3.9032 = 6.5054 < 8.4570] w=0.3271 to align # Constraint # added constraint: constraint((T0384)F128.CB, (T0384)A186.CB) [> 3.6554 = 6.0923 < 7.9199] w=0.3244 to align # Constraint # added constraint: constraint((T0384)V187.CB, (T0384)A196.CB) [> 3.7723 = 6.2872 < 8.1734] w=0.3220 to align # Constraint # added constraint: constraint((T0384)D212.CB, (T0384)I224.CB) [> 4.2518 = 7.0863 < 9.2122] w=0.3218 to align # Constraint # added constraint: constraint((T0384)L28.CB, (T0384)N48.CB) [> 3.4873 = 5.8122 < 7.5558] w=0.3211 to align # Constraint # added constraint: constraint((T0384)V29.CB, (T0384)N48.CB) [> 4.1213 = 6.8689 < 8.9295] w=0.3211 to align # Constraint # added constraint: constraint((T0384)F76.CB, (T0384)S97.CB) [> 3.6483 = 6.0805 < 7.9047] w=0.3200 to align # Constraint # added constraint: constraint((T0384)E18.CB, (T0384)Y46.CB) [> 4.0683 = 6.7805 < 8.8147] w=0.3182 to align # Constraint # added constraint: constraint((T0384)L55.CB, (T0384)A85.CB) [> 3.8421 = 6.4035 < 8.3245] w=0.3160 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)A186.CB) [> 3.6001 = 6.0001 < 7.8002] w=0.3157 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)I214.CB) [> 4.0477 = 6.7461 < 8.7699] w=0.3142 to align # Constraint # added constraint: constraint((T0384)K80.CB, (T0384)D104.CB) [> 4.1853 = 6.9755 < 9.0681] w=0.3128 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)H199.CB) [> 4.3585 = 7.2641 < 9.4433] w=0.3118 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)P218.CB) [> 3.1710 = 5.2850 < 6.8704] w=0.3110 to align # Constraint # added constraint: constraint((T0384)F16.CB, (T0384)V281.CB) [> 4.0312 = 6.7187 < 8.7343] w=0.3108 to align # Constraint # added constraint: constraint((T0384)A143.CB, (T0384)L215.CB) [> 3.4154 = 5.6923 < 7.4000] w=0.3101 to align # Constraint # added constraint: constraint((T0384)G86.CA, (T0384)N113.CB) [> 3.7113 = 6.1854 < 8.0410] w=0.3085 to align # Constraint # added constraint: constraint((T0384)H14.CB, (T0384)Y46.CB) [> 3.8113 = 6.3522 < 8.2579] w=0.3061 to align # Constraint # added constraint: constraint((T0384)A19.CB, (T0384)T278.CB) [> 3.3372 = 5.5620 < 7.2306] w=0.3035 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)I214.CB) [> 3.2133 = 5.3555 < 6.9622] w=0.3024 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)G211.CA) [> 3.9984 = 6.6640 < 8.6632] w=0.3020 to align # Constraint # added constraint: constraint((T0384)M1.CB, (T0384)E25.CB) [> 3.6612 = 6.1020 < 7.9326] w=0.2999 to align # Constraint # added constraint: constraint((T0384)M1.CB, (T0384)Q27.CB) [> 3.3275 = 5.5458 < 7.2095] w=0.2990 to align # Constraint # added constraint: constraint((T0384)V89.CB, (T0384)A109.CB) [> 4.0919 = 6.8198 < 8.8657] w=0.2971 to align # Constraint # added constraint: constraint((T0384)L83.CB, (T0384)L105.CB) [> 4.1258 = 6.8763 < 8.9392] w=0.2955 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)G211.CA) [> 3.2654 = 5.4423 < 7.0750] w=0.2953 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)F216.CB) [> 3.0744 = 5.1240 < 6.6611] w=0.2953 to align # Constraint # added constraint: constraint((T0384)G211.CA, (T0384)K225.CB) [> 3.7935 = 6.3225 < 8.2192] w=0.2928 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)P94.CB) [> 3.2241 = 5.3735 < 6.9856] w=0.2922 to align # Constraint # added constraint: constraint((T0384)S13.CB, (T0384)S70.CB) [> 4.5872 = 7.6454 < 9.9390] w=0.2914 to align # Constraint # added constraint: constraint((T0384)G8.CA, (T0384)P71.CB) [> 4.6348 = 7.7246 < 10.0420] w=0.2904 to align # Constraint # added constraint: constraint((T0384)T9.CB, (T0384)K35.CB) [> 4.2384 = 7.0641 < 9.1833] w=0.2902 to align # Constraint # added constraint: constraint((T0384)H75.CB, (T0384)E92.CB) [> 4.1041 = 6.8401 < 8.8922] w=0.2901 to align # Constraint # added constraint: constraint((T0384)A143.CB, (T0384)Y217.CB) [> 3.7432 = 6.2387 < 8.1103] w=0.2901 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)E118.CB) [> 3.9502 = 6.5837 < 8.5587] w=0.2893 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)F284.CB) [> 3.1152 = 5.1919 < 6.7495] w=0.2889 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)I288.CB) [> 3.7524 = 6.2541 < 8.1303] w=0.2889 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)Y198.CB) [> 3.4873 = 5.8123 < 7.5559] w=0.2888 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)A196.CB) [> 4.1907 = 6.9845 < 9.0799] w=0.2885 to align # Constraint # added constraint: constraint((T0384)N210.CB, (T0384)K228.CB) [> 3.9645 = 6.6074 < 8.5897] w=0.2882 to align # Constraint # added constraint: constraint((T0384)F128.CB, (T0384)A185.CB) [> 3.9630 = 6.6051 < 8.5866] w=0.2882 to align # Constraint # added constraint: constraint((T0384)K132.CB, (T0384)L189.CB) [> 3.5961 = 5.9934 < 7.7915] w=0.2874 to align # Constraint # added constraint: constraint((T0384)A186.CB, (T0384)A196.CB) [> 3.5774 = 5.9623 < 7.7510] w=0.2869 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)G213.CA) [> 4.0281 = 6.7136 < 8.7276] w=0.2853 to align # Constraint # added constraint: constraint((T0384)Q201.CB, (T0384)G211.CA) [> 3.8167 = 6.3612 < 8.2696] w=0.2828 to align # Constraint # added constraint: constraint((T0384)H21.CB, (T0384)Y46.CB) [> 3.5187 = 5.8645 < 7.6239] w=0.2822 to align # Constraint # added constraint: constraint((T0384)H88.CB, (T0384)I288.CB) [> 3.3532 = 5.5887 < 7.2653] w=0.2816 to align # Constraint # added constraint: constraint((T0384)L209.CB, (T0384)N229.CB) [> 3.4411 = 5.7352 < 7.4557] w=0.2815 to align # Constraint # added constraint: constraint((T0384)A143.CB, (T0384)F216.CB) [> 4.3683 = 7.2805 < 9.4646] w=0.2808 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)G213.CA) [> 3.8141 = 6.3569 < 8.2640] w=0.2782 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)D212.CB) [> 3.8080 = 6.3466 < 8.2506] w=0.2771 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)P182.CB) [> 3.3396 = 5.5660 < 7.2358] w=0.2766 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)D212.CB) [> 3.2146 = 5.3577 < 6.9651] w=0.2758 to align # Constraint # added constraint: constraint((T0384)L4.CB, (T0384)A30.CB) [> 4.5692 = 7.6153 < 9.8999] w=0.2749 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)F284.CB) [> 3.2174 = 5.3623 < 6.9710] w=0.2745 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)A196.CB) [> 4.3242 = 7.2071 < 9.3692] w=0.2744 to align # Constraint # added constraint: constraint((T0384)F16.CB, (T0384)E92.CB) [> 4.4502 = 7.4170 < 9.6422] w=0.2744 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)D212.CB) [> 4.1662 = 6.9437 < 9.0268] w=0.2733 to align # Constraint # added constraint: constraint((T0384)V29.CB, (T0384)F52.CB) [> 3.8194 = 6.3657 < 8.2755] w=0.2728 to align # Constraint # added constraint: constraint((T0384)Q201.CB, (T0384)N210.CB) [> 3.5640 = 5.9400 < 7.7221] w=0.2682 to align # Constraint # added constraint: constraint((T0384)L74.CB, (T0384)K93.CB) [> 3.6619 = 6.1032 < 7.9342] w=0.2682 to align # Constraint # added constraint: constraint((T0384)S13.CB, (T0384)E92.CB) [> 4.6123 = 7.6871 < 9.9933] w=0.2672 to align # Constraint # added constraint: constraint((T0384)A19.CB, (T0384)V281.CB) [> 3.5205 = 5.8674 < 7.6277] w=0.2670 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)A196.CB) [> 3.5963 = 5.9938 < 7.7920] w=0.2668 to align # Constraint # added constraint: constraint((T0384)V29.CB, (T0384)S61.CB) [> 3.3586 = 5.5976 < 7.2769] w=0.2666 to align # Constraint # added constraint: constraint((T0384)A79.CB, (T0384)T108.CB) [> 3.8990 = 6.4984 < 8.4479] w=0.2665 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)A186.CB) [> 3.8690 = 6.4484 < 8.3829] w=0.2640 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)A200.CB) [> 4.3685 = 7.2808 < 9.4651] w=0.2630 to align # Constraint # added constraint: constraint((T0384)R121.CB, (T0384)E280.CB) [> 3.4182 = 5.6970 < 7.4061] w=0.2609 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)L209.CB) [> 3.1583 = 5.2638 < 6.8429] w=0.2608 to align # Constraint # added constraint: constraint((T0384)L28.CB, (T0384)Y46.CB) [> 3.6397 = 6.0661 < 7.8860] w=0.2606 to align # Constraint # added constraint: constraint((T0384)A196.CB, (T0384)L215.CB) [> 3.6630 = 6.1051 < 7.9366] w=0.2605 to align # Constraint # added constraint: constraint((T0384)Y26.CB, (T0384)A285.CB) [> 3.7504 = 6.2507 < 8.1258] w=0.2602 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)T197.CB) [> 4.3171 = 7.1951 < 9.3536] w=0.2596 to align # Constraint # added constraint: constraint((T0384)K132.CB, (T0384)F190.CB) [> 4.2850 = 7.1417 < 9.2842] w=0.2587 to align # Constraint # added constraint: constraint((T0384)L215.CB, (T0384)I224.CB) [> 4.5153 = 7.5255 < 9.7831] w=0.2575 to align # Constraint # added constraint: constraint((T0384)I214.CB, (T0384)I224.CB) [> 3.5190 = 5.8651 < 7.6246] w=0.2575 to align # Constraint # added constraint: constraint((T0384)H15.CB, (T0384)M277.CB) [> 3.5073 = 5.8456 < 7.5992] w=0.2567 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)F190.CB) [> 3.7359 = 6.2265 < 8.0945] w=0.2564 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)G211.CA) [> 3.7538 = 6.2563 < 8.1332] w=0.2564 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)L209.CB) [> 3.7953 = 6.3255 < 8.2232] w=0.2555 to align # Constraint # added constraint: constraint((T0384)A79.CB, (T0384)A109.CB) [> 4.1049 = 6.8415 < 8.8939] w=0.2553 to align # Constraint # added constraint: constraint((T0384)S33.CB, (T0384)F52.CB) [> 4.2050 = 7.0083 < 9.1108] w=0.2545 to align # Constraint # added constraint: constraint((T0384)A39.CB, (T0384)L51.CB) [> 2.9298 = 4.8830 < 6.3479] w=0.2540 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)E280.CB) [> 3.9757 = 6.6262 < 8.6141] w=0.2513 to align # Constraint # added constraint: constraint((T0384)M1.CB, (T0384)Y26.CB) [> 3.7503 = 6.2506 < 8.1257] w=0.2478 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)T197.CB) [> 3.4693 = 5.7821 < 7.5168] w=0.2457 to align # Constraint # added constraint: constraint((T0384)L209.CB, (T0384)K228.CB) [> 3.2742 = 5.4570 < 7.0941] w=0.2457 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)A185.CB) [> 3.5826 = 5.9710 < 7.7623] w=0.2456 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)M287.CB) [> 3.9002 = 6.5003 < 8.4504] w=0.2450 to align # Constraint # added constraint: constraint((T0384)F128.CB, (T0384)L189.CB) [> 3.4870 = 5.8117 < 7.5552] w=0.2448 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)L209.CB) [> 3.5948 = 5.9913 < 7.7887] w=0.2448 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)A95.CB) [> 3.7287 = 6.2145 < 8.0788] w=0.2440 to align # Constraint # added constraint: constraint((T0384)D212.CB, (T0384)A226.CB) [> 3.8721 = 6.4535 < 8.3896] w=0.2426 to align # Constraint # added constraint: constraint((T0384)S73.CB, (T0384)S97.CB) [> 3.5778 = 5.9629 < 7.7518] w=0.2415 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)E280.CB) [> 3.6959 = 6.1598 < 8.0077] w=0.2394 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)D195.CB) [> 4.0643 = 6.7739 < 8.8061] w=0.2386 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)Y198.CB) [> 3.9770 = 6.6283 < 8.6168] w=0.2375 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)L189.CB) [> 3.4527 = 5.7545 < 7.4808] w=0.2374 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)F190.CB) [> 3.8598 = 6.4331 < 8.3630] w=0.2372 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)I214.CB) [> 3.6177 = 6.0294 < 7.8383] w=0.2358 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)G211.CA) [> 3.8196 = 6.3659 < 8.2757] w=0.2351 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)N210.CB) [> 3.4289 = 5.7148 < 7.4292] w=0.2350 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)A200.CB) [> 3.2964 = 5.4940 < 7.1422] w=0.2347 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)L215.CB) [> 3.4600 = 5.7667 < 7.4968] w=0.2344 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)S206.CB) [> 3.6852 = 6.1420 < 7.9845] w=0.2323 to align # Constraint # added constraint: constraint((T0384)L2.CB, (T0384)I288.CB) [> 4.1342 = 6.8903 < 8.9573] w=0.2309 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)I288.CB) [> 3.4642 = 5.7736 < 7.5057] w=0.2306 to align # Constraint # added constraint: constraint((T0384)G213.CA, (T0384)H223.CB) [> 3.8382 = 6.3970 < 8.3161] w=0.2289 to align # Constraint # added constraint: constraint((T0384)A200.CB, (T0384)D212.CB) [> 4.1679 = 6.9465 < 9.0304] w=0.2281 to align # Constraint # added constraint: constraint((T0384)R121.CB, (T0384)M277.CB) [> 3.7313 = 6.2188 < 8.0844] w=0.2276 to align # Constraint # added constraint: constraint((T0384)L2.CB, (T0384)Q289.CB) [> 3.8367 = 6.3945 < 8.3129] w=0.2274 to align # Constraint # added constraint: constraint((T0384)A20.CB, (T0384)Y67.CB) [> 4.5104 = 7.5174 < 9.7726] w=0.2272 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)L209.CB) [> 3.7171 = 6.1952 < 8.0538] w=0.2259 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)A200.CB) [> 3.1828 = 5.3047 < 6.8961] w=0.2256 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)I207.CB) [> 3.2533 = 5.4222 < 7.0489] w=0.2240 to align # Constraint # added constraint: constraint((T0384)F76.CB, (T0384)A95.CB) [> 4.1647 = 6.9412 < 9.0236] w=0.2232 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)D212.CB) [> 3.7928 = 6.3214 < 8.2178] w=0.2211 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)N210.CB) [> 4.1160 = 6.8601 < 8.9181] w=0.2186 to align # Constraint # added constraint: constraint((T0384)A200.CB, (T0384)G211.CA) [> 3.1614 = 5.2689 < 6.8496] w=0.2183 to align # Constraint # added constraint: constraint((T0384)Y123.CB, (T0384)L209.CB) [> 4.0477 = 6.7461 < 8.7699] w=0.2169 to align # Constraint # added constraint: constraint((T0384)T9.CB, (T0384)R34.CB) [> 4.2621 = 7.1035 < 9.2345] w=0.2169 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)K93.CB) [> 3.6643 = 6.1072 < 7.9394] w=0.2163 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)L203.CB) [> 4.0231 = 6.7052 < 8.7167] w=0.2163 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)A196.CB) [> 3.2995 = 5.4992 < 7.1489] w=0.2163 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)Y198.CB) [> 3.8525 = 6.4208 < 8.3470] w=0.2158 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)A186.CB) [> 3.6222 = 6.0370 < 7.8481] w=0.2125 to align # Constraint # added constraint: constraint((T0384)H199.CB, (T0384)G213.CA) [> 3.8167 = 6.3611 < 8.2694] w=0.2120 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)Y184.CB) [> 3.6895 = 6.1491 < 7.9939] w=0.2112 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)L183.CB) [> 4.0806 = 6.8010 < 8.8413] w=0.2108 to align # Constraint # added constraint: constraint((T0384)L183.CB, (T0384)Y198.CB) [> 2.8979 = 4.8299 < 6.2789] w=0.2101 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)H199.CB) [> 3.3633 = 5.6054 < 7.2870] w=0.2092 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)Y198.CB) [> 3.0255 = 5.0426 < 6.5553] w=0.2092 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)A119.CB) [> 4.4150 = 7.3583 < 9.5658] w=0.2092 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)H199.CB) [> 4.1733 = 6.9555 < 9.0422] w=0.2092 to align # Constraint # added constraint: constraint((T0384)S33.CB, (T0384)S70.CB) [> 4.4865 = 7.4774 < 9.7206] w=0.2088 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)A120.CB) [> 3.6360 = 6.0599 < 7.8779] w=0.2088 to align # Constraint # added constraint: constraint((T0384)H124.CB, (T0384)T276.CB) [> 2.9163 = 4.8606 < 6.3187] w=0.2078 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)D208.CB) [> 3.7025 = 6.1708 < 8.0221] w=0.2072 to align # Constraint # added constraint: constraint((T0384)V6.CB, (T0384)I68.CB) [> 4.6487 = 7.7478 < 10.0721] w=0.2069 to align # Constraint # added constraint: constraint((T0384)H199.CB, (T0384)D212.CB) [> 3.0536 = 5.0894 < 6.6162] w=0.2065 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)A200.CB) [> 4.1192 = 6.8653 < 8.9249] w=0.2038 to align # Constraint # added constraint: constraint((T0384)H199.CB, (T0384)G211.CA) [> 3.8850 = 6.4750 < 8.4175] w=0.2037 to align # Constraint # added constraint: constraint((T0384)S70.CB, (T0384)E92.CB) [> 4.5325 = 7.5542 < 9.8204] w=0.2031 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)G213.CA) [> 3.9880 = 6.6466 < 8.6406] w=0.2027 to align # Constraint # added constraint: constraint((T0384)L2.CB, (T0384)A285.CB) [> 3.4404 = 5.7339 < 7.4541] w=0.2013 to align # Constraint # added constraint: constraint((T0384)L209.CB, (T0384)G227.CA) [> 3.8483 = 6.4138 < 8.3379] w=0.2012 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)F216.CB) [> 3.3212 = 5.5353 < 7.1959] w=0.2004 to align # Constraint # added constraint: constraint((T0384)V66.CB, (T0384)A85.CB) [> 4.6111 = 7.6851 < 9.9906] w=0.2003 to align # Constraint # added constraint: constraint((T0384)D212.CB, (T0384)H223.CB) [> 4.1482 = 6.9137 < 8.9878] w=0.1997 to align # Constraint # added constraint: constraint((T0384)N210.CB, (T0384)N229.CB) [> 4.0358 = 6.7263 < 8.7442] w=0.1989 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)F115.CB) [> 4.2957 = 7.1596 < 9.3074] w=0.1979 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)A143.CB) [> 3.7785 = 6.2974 < 8.1867] w=0.1976 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)L245.CB) [> 3.9688 = 6.6146 < 8.5990] w=0.1976 to align # Constraint # added constraint: constraint((T0384)T197.CB, (T0384)I214.CB) [> 2.9381 = 4.8968 < 6.3659] w=0.1974 to align # Constraint # added constraint: constraint((T0384)T197.CB, (T0384)G213.CA) [> 3.8039 = 6.3398 < 8.2417] w=0.1974 to align # Constraint # added constraint: constraint((T0384)Y198.CB, (T0384)I214.CB) [> 4.0067 = 6.6778 < 8.6812] w=0.1961 to align # Constraint # added constraint: constraint((T0384)Y123.CB, (T0384)Y150.CB) [> 3.5473 = 5.9122 < 7.6859] w=0.1960 to align # Constraint # added constraint: constraint((T0384)L74.CB, (T0384)A95.CB) [> 3.4521 = 5.7534 < 7.4795] w=0.1945 to align # Constraint # added constraint: constraint((T0384)H124.CB, (T0384)P182.CB) [> 3.2729 = 5.4548 < 7.0912] w=0.1944 to align # Constraint # added constraint: constraint((T0384)R34.CB, (T0384)S70.CB) [> 4.4603 = 7.4338 < 9.6639] w=0.1931 to align # Constraint # added constraint: constraint((T0384)E125.CB, (T0384)T276.CB) [> 2.7365 = 4.5608 < 5.9291] w=0.1902 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)G213.CA) [> 3.9029 = 6.5048 < 8.4562] w=0.1892 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)F190.CB) [> 3.8812 = 6.4687 < 8.4094] w=0.1889 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)A148.CB) [> 3.6542 = 6.0904 < 7.9175] w=0.1880 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)K93.CB) [> 3.6783 = 6.1306 < 7.9697] w=0.1874 to align # Constraint # added constraint: constraint((T0384)L183.CB, (T0384)A196.CB) [> 3.0467 = 5.0778 < 6.6012] w=0.1871 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)L178.CB) [> 3.4343 = 5.7238 < 7.4409] w=0.1867 to align # Constraint # added constraint: constraint((T0384)A30.CB, (T0384)S62.CB) [> 3.6949 = 6.1581 < 8.0056] w=0.1865 to align # Constraint # added constraint: constraint((T0384)F16.CB, (T0384)M277.CB) [> 3.8680 = 6.4467 < 8.3807] w=0.1859 to align # Constraint # added constraint: constraint((T0384)A19.CB, (T0384)M277.CB) [> 2.6018 = 4.3364 < 5.6373] w=0.1859 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)A283.CB) [> 4.4324 = 7.3874 < 9.6036] w=0.1859 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)Y239.CB) [> 3.9579 = 6.5965 < 8.5755] w=0.1829 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)Y239.CB) [> 3.3280 = 5.5467 < 7.2107] w=0.1829 to align # Constraint # added constraint: constraint((T0384)D195.CB, (T0384)L215.CB) [> 3.9009 = 6.5015 < 8.4519] w=0.1828 to align # Constraint # added constraint: constraint((T0384)N122.CB, (T0384)A185.CB) [> 3.6295 = 6.0491 < 7.8639] w=0.1828 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)F145.CB) [> 3.9503 = 6.5839 < 8.5590] w=0.1822 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)V222.CB) [> 4.4145 = 7.3575 < 9.5648] w=0.1816 to align # Constraint # added constraint: constraint((T0384)A143.CB, (T0384)F190.CB) [> 3.5650 = 5.9417 < 7.7243] w=0.1816 to align # Constraint # added constraint: constraint((T0384)G142.CA, (T0384)D219.CB) [> 4.0162 = 6.6937 < 8.7018] w=0.1815 to align # Constraint # added constraint: constraint((T0384)F128.CB, (T0384)F190.CB) [> 3.9341 = 6.5568 < 8.5239] w=0.1809 to align # Constraint # added constraint: constraint((T0384)H124.CB, (T0384)A186.CB) [> 3.5443 = 5.9071 < 7.6793] w=0.1806 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)L203.CB) [> 4.1246 = 6.8744 < 8.9367] w=0.1797 to align # Constraint # added constraint: constraint((T0384)K132.CB, (T0384)R188.CB) [> 4.0520 = 6.7533 < 8.7792] w=0.1795 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)R121.CB) [> 3.3622 = 5.6037 < 7.2848] w=0.1795 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)A186.CB) [> 4.0184 = 6.6974 < 8.7066] w=0.1795 to align # Constraint # added constraint: constraint((T0384)L74.CB, (T0384)L91.CB) [> 3.5142 = 5.8570 < 7.6142] w=0.1794 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)L203.CB) [> 3.5737 = 5.9562 < 7.7431] w=0.1792 to align # Constraint # added constraint: constraint((T0384)Q78.CB, (T0384)V89.CB) [> 4.3254 = 7.2091 < 9.3718] w=0.1790 to align # Constraint # added constraint: constraint((T0384)K3.CB, (T0384)A30.CB) [> 4.4837 = 7.4729 < 9.7147] w=0.1789 to align # Constraint # added constraint: constraint((T0384)L4.CB, (T0384)A285.CB) [> 4.2561 = 7.0934 < 9.2214] w=0.1762 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)I180.CB) [> 3.3181 = 5.5301 < 7.1892] w=0.1756 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)P235.CB) [> 3.4856 = 5.8093 < 7.5521] w=0.1754 to align # Constraint # added constraint: constraint((T0384)W102.CB, (T0384)E118.CB) [> 3.3839 = 5.6398 < 7.3317] w=0.1746 to align # Constraint # added constraint: constraint((T0384)Y26.CB, (T0384)L65.CB) [> 4.5297 = 7.5494 < 9.8143] w=0.1726 to align # Constraint # added constraint: constraint((T0384)L74.CB, (T0384)P94.CB) [> 4.2127 = 7.0212 < 9.1276] w=0.1722 to align # Constraint # added constraint: constraint((T0384)A95.CB, (T0384)A120.CB) [> 3.5943 = 5.9906 < 7.7877] w=0.1708 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)F115.CB) [> 4.5278 = 7.5464 < 9.8103] w=0.1698 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)A285.CB) [> 3.9375 = 6.5624 < 8.5312] w=0.1691 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)A143.CB) [> 3.9382 = 6.5636 < 8.5327] w=0.1687 to align # Constraint # added constraint: constraint((T0384)A193.CB, (T0384)Y217.CB) [> 3.5950 = 5.9916 < 7.7891] w=0.1683 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)I230.CB) [> 3.5394 = 5.8990 < 7.6687] w=0.1683 to align # Constraint # added constraint: constraint((T0384)A186.CB, (T0384)L215.CB) [> 4.0637 = 6.7728 < 8.8046] w=0.1683 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)C236.CB) [> 3.6981 = 6.1634 < 8.0125] w=0.1683 to align # Constraint # added constraint: constraint((T0384)A196.CB, (T0384)I214.CB) [> 3.6804 = 6.1341 < 7.9743] w=0.1682 to align # Constraint # added constraint: constraint((T0384)A196.CB, (T0384)G213.CA) [> 4.3157 = 7.1929 < 9.3507] w=0.1682 to align # Constraint # added constraint: constraint((T0384)A69.CB, (T0384)A119.CB) [> 4.1711 = 6.9518 < 9.0374] w=0.1678 to align # Constraint # added constraint: constraint((T0384)K3.CB, (T0384)S61.CB) [> 4.1604 = 6.9339 < 9.0141] w=0.1675 to align # Constraint # added constraint: constraint((T0384)D212.CB, (T0384)G227.CA) [> 4.1044 = 6.8407 < 8.8929] w=0.1669 to align # Constraint # added constraint: constraint((T0384)G5.CA, (T0384)F59.CB) [> 4.3504 = 7.2507 < 9.4259] w=0.1665 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)N146.CB) [> 3.8887 = 6.4812 < 8.4255] w=0.1661 to align # Constraint # added constraint: constraint((T0384)A200.CB, (T0384)N210.CB) [> 4.1851 = 6.9752 < 9.0677] w=0.1660 to align # Constraint # added constraint: constraint((T0384)K93.CB, (T0384)R121.CB) [> 3.9181 = 6.5303 < 8.4893] w=0.1659 to align # Constraint # added constraint: constraint((T0384)R121.CB, (T0384)P182.CB) [> 3.4433 = 5.7389 < 7.4606] w=0.1655 to align # Constraint # added constraint: constraint((T0384)H124.CB, (T0384)A283.CB) [> 3.7040 = 6.1733 < 8.0253] w=0.1639 to align # Constraint # added constraint: constraint((T0384)A69.CB, (T0384)L91.CB) [> 4.5855 = 7.6425 < 9.9352] w=0.1632 to align # Constraint # added constraint: constraint((T0384)L55.CB, (T0384)A77.CB) [> 4.5080 = 7.5134 < 9.7674] w=0.1619 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)I238.CB) [> 4.1917 = 6.9862 < 9.0820] w=0.1610 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)Q221.CB) [> 4.2229 = 7.0381 < 9.1496] w=0.1610 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)H223.CB) [> 4.4325 = 7.3875 < 9.6037] w=0.1610 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)N229.CB) [> 4.2641 = 7.1068 < 9.2388] w=0.1610 to align # Constraint # added constraint: constraint((T0384)G179.CA, (T0384)A226.CB) [> 3.1001 = 5.1669 < 6.7170] w=0.1610 to align # Constraint # added constraint: constraint((T0384)P182.CB, (T0384)A226.CB) [> 3.8948 = 6.4914 < 8.4388] w=0.1610 to align # Constraint # added constraint: constraint((T0384)N194.CB, (T0384)F216.CB) [> 3.5301 = 5.8835 < 7.6485] w=0.1610 to align # Constraint # added constraint: constraint((T0384)N122.CB, (T0384)Y184.CB) [> 3.9658 = 6.6097 < 8.5926] w=0.1609 to align # Constraint # added constraint: constraint((T0384)N122.CB, (T0384)Y181.CB) [> 3.3444 = 5.5740 < 7.2462] w=0.1609 to align # Constraint # added constraint: constraint((T0384)A193.CB, (T0384)L215.CB) [> 2.8281 = 4.7134 < 6.1274] w=0.1609 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)Y181.CB) [> 3.6950 = 6.1584 < 8.0059] w=0.1599 to align # Constraint # added constraint: constraint((T0384)P71.CB, (T0384)E92.CB) [> 4.4096 = 7.3492 < 9.5540] w=0.1588 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)G213.CA) [> 3.1531 = 5.2551 < 6.8317] w=0.1565 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)L215.CB) [> 2.9046 = 4.8411 < 6.2934] w=0.1563 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)G179.CA) [> 3.6325 = 6.0542 < 7.8704] w=0.1550 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)S232.CB) [> 3.9030 = 6.5050 < 8.4565] w=0.1537 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)P235.CB) [> 4.5901 = 7.6502 < 9.9452] w=0.1537 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)K225.CB) [> 4.4574 = 7.4290 < 9.6577] w=0.1537 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)E237.CB) [> 3.2864 = 5.4773 < 7.1206] w=0.1537 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)F284.CB) [> 4.1866 = 6.9777 < 9.0711] w=0.1537 to align # Constraint # added constraint: constraint((T0384)K93.CB, (T0384)I180.CB) [> 3.5915 = 5.9858 < 7.7816] w=0.1537 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)Y217.CB) [> 3.0810 = 5.1350 < 6.6755] w=0.1533 to align # Constraint # added constraint: constraint((T0384)F128.CB, (T0384)R188.CB) [> 4.6061 = 7.6769 < 9.9799] w=0.1529 to align # Constraint # added constraint: constraint((T0384)Y198.CB, (T0384)G211.CA) [> 4.0794 = 6.7990 < 8.8387] w=0.1524 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)L215.CB) [> 4.5409 = 7.5682 < 9.8387] w=0.1522 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)Y217.CB) [> 3.8811 = 6.4684 < 8.4089] w=0.1519 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)T197.CB) [> 4.1273 = 6.8788 < 8.9425] w=0.1519 to align # Constraint # added constraint: constraint((T0384)Y32.CB, (T0384)S70.CB) [> 4.4181 = 7.3635 < 9.5726] w=0.1511 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)L189.CB) [> 4.0336 = 6.7227 < 8.7395] w=0.1510 to align # Constraint # added constraint: constraint((T0384)I180.CB, (T0384)Y198.CB) [> 3.3517 = 5.5861 < 7.2620] w=0.1509 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)L215.CB) [> 3.7571 = 6.2619 < 8.1405] w=0.1496 to align # Constraint # added constraint: constraint((T0384)A20.CB, (T0384)V281.CB) [> 3.7920 = 6.3200 < 8.2159] w=0.1493 to align # Constraint # added constraint: constraint((T0384)L141.CB, (T0384)Y217.CB) [> 3.0501 = 5.0835 < 6.6086] w=0.1485 to align # Constraint # added constraint: constraint((T0384)N210.CB, (T0384)K225.CB) [> 4.0918 = 6.8197 < 8.8657] w=0.1484 to align # Constraint # added constraint: constraint((T0384)A95.CB, (T0384)A119.CB) [> 3.8865 = 6.4775 < 8.4207] w=0.1471 to align # Constraint # added constraint: constraint((T0384)P182.CB, (T0384)K225.CB) [> 3.8884 = 6.4806 < 8.4248] w=0.1463 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)T231.CB) [> 3.8658 = 6.4431 < 8.3760] w=0.1463 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)A226.CB) [> 4.2507 = 7.0845 < 9.2099] w=0.1463 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)K225.CB) [> 3.4900 = 5.8167 < 7.5617] w=0.1463 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)H223.CB) [> 3.6225 = 6.0374 < 7.8487] w=0.1463 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)T241.CB) [> 3.6331 = 6.0552 < 7.8717] w=0.1463 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)T240.CB) [> 3.8188 = 6.3647 < 8.2741] w=0.1463 to align # Constraint # added constraint: constraint((T0384)N194.CB, (T0384)Y217.CB) [> 4.0187 = 6.6979 < 8.7072] w=0.1463 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)L245.CB) [> 3.9651 = 6.6084 < 8.5910] w=0.1463 to align # Constraint # added constraint: constraint((T0384)L183.CB, (T0384)I224.CB) [> 3.5187 = 5.8645 < 7.6238] w=0.1463 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)E237.CB) [> 4.3105 = 7.1842 < 9.3395] w=0.1463 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)D177.CB) [> 4.0445 = 6.7408 < 8.7630] w=0.1463 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)L247.CB) [> 4.0629 = 6.7716 < 8.8030] w=0.1462 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)L178.CB) [> 3.6875 = 6.1458 < 7.9896] w=0.1457 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)I224.CB) [> 4.0862 = 6.8104 < 8.8535] w=0.1454 to align # Constraint # added constraint: constraint((T0384)T197.CB, (T0384)L215.CB) [> 4.0955 = 6.8258 < 8.8735] w=0.1451 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)A148.CB) [> 4.1705 = 6.9508 < 9.0361] w=0.1443 to align # Constraint # added constraint: constraint((T0384)Y26.CB, (T0384)V281.CB) [> 3.4125 = 5.6875 < 7.3937] w=0.1420 to align # Constraint # added constraint: constraint((T0384)F16.CB, (T0384)G304.CA) [> 4.2983 = 7.1639 < 9.3131] w=0.1417 to align # Constraint # added constraint: constraint((T0384)G5.CA, (T0384)A20.CB) [> 4.5990 = 7.6650 < 9.9645] w=0.1404 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)F216.CB) [> 4.3705 = 7.2842 < 9.4694] w=0.1402 to align # Constraint # added constraint: constraint((T0384)L175.CB, (T0384)G211.CA) [> 3.8349 = 6.3914 < 8.3088] w=0.1393 to align # Constraint # added constraint: constraint((T0384)C236.CB, (T0384)L245.CB) [> 4.4890 = 7.4816 < 9.7261] w=0.1390 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)L234.CB) [> 3.4031 = 5.6718 < 7.3733] w=0.1390 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)C236.CB) [> 4.4332 = 7.3886 < 9.6052] w=0.1390 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)M176.CB) [> 3.9773 = 6.6288 < 8.6174] w=0.1390 to align # Constraint # added constraint: constraint((T0384)M176.CB, (T0384)L310.CB) [> 3.3817 = 5.6362 < 7.3271] w=0.1388 to align # Constraint # added constraint: constraint((T0384)W102.CB, (T0384)I116.CB) [> 3.8099 = 6.3498 < 8.2547] w=0.1387 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)D219.CB) [> 3.9321 = 6.5535 < 8.5195] w=0.1387 to align # Constraint # added constraint: constraint((T0384)V29.CB, (T0384)K60.CB) [> 4.0132 = 6.6886 < 8.6952] w=0.1381 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)Y181.CB) [> 3.7143 = 6.1906 < 8.0478] w=0.1363 to align # Constraint # added constraint: constraint((T0384)I180.CB, (T0384)A200.CB) [> 2.8346 = 4.7243 < 6.1417] w=0.1362 to align # Constraint # added constraint: constraint((T0384)V29.CB, (T0384)D64.CB) [> 4.4118 = 7.3529 < 9.5588] w=0.1358 to align # Constraint # added constraint: constraint((T0384)M287.CB, (T0384)Y296.CB) [> 3.7801 = 6.3001 < 8.1901] w=0.1352 to align # Constraint # added constraint: constraint((T0384)H15.CB, (T0384)L300.CB) [> 3.5742 = 5.9570 < 7.7441] w=0.1344 to align # Constraint # added constraint: constraint((T0384)H21.CB, (T0384)Q47.CB) [> 4.0628 = 6.7714 < 8.8028] w=0.1339 to align # Constraint # added constraint: constraint((T0384)Y26.CB, (T0384)A282.CB) [> 3.8319 = 6.3865 < 8.3025] w=0.1326 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)F284.CB) [> 4.2709 = 7.1182 < 9.2537] w=0.1325 to align # Constraint # added constraint: constraint((T0384)I12.CB, (T0384)M277.CB) [> 3.8333 = 6.3888 < 8.3054] w=0.1323 to align # Constraint # added constraint: constraint((T0384)L183.CB, (T0384)T197.CB) [> 3.0695 = 5.1158 < 6.6505] w=0.1320 to align # Constraint # added constraint: constraint((T0384)T130.CB, (T0384)I224.CB) [> 4.3367 = 7.2278 < 9.3962] w=0.1318 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)I238.CB) [> 4.1027 = 6.8378 < 8.8891] w=0.1317 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)I224.CB) [> 3.6678 = 6.1130 < 7.9468] w=0.1317 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)G227.CA) [> 3.2440 = 5.4067 < 7.0287] w=0.1317 to align # Constraint # added constraint: constraint((T0384)M154.CB, (T0384)N229.CB) [> 3.4565 = 5.7608 < 7.4891] w=0.1317 to align # Constraint # added constraint: constraint((T0384)A174.CB, (T0384)D208.CB) [> 3.2697 = 5.4494 < 7.0843] w=0.1317 to align # Constraint # added constraint: constraint((T0384)A174.CB, (T0384)K228.CB) [> 3.3581 = 5.5968 < 7.2758] w=0.1317 to align # Constraint # added constraint: constraint((T0384)L175.CB, (T0384)D208.CB) [> 4.0995 = 6.8324 < 8.8822] w=0.1317 to align # Constraint # added constraint: constraint((T0384)P182.CB, (T0384)I224.CB) [> 2.7998 = 4.6663 < 6.0662] w=0.1317 to align # Constraint # added constraint: constraint((T0384)A186.CB, (T0384)V222.CB) [> 3.0756 = 5.1261 < 6.6639] w=0.1317 to align # Constraint # added constraint: constraint((T0384)A186.CB, (T0384)I224.CB) [> 3.5501 = 5.9169 < 7.6920] w=0.1317 to align # Constraint # added constraint: constraint((T0384)E237.CB, (T0384)T246.CB) [> 3.0440 = 5.0732 < 6.5952] w=0.1317 to align # Constraint # added constraint: constraint((T0384)A193.CB, (T0384)F216.CB) [> 3.9859 = 6.6432 < 8.6362] w=0.1317 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)I238.CB) [> 4.5611 = 7.6019 < 9.8824] w=0.1317 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)I238.CB) [> 2.9202 = 4.8671 < 6.3272] w=0.1317 to align # Constraint # added constraint: constraint((T0384)K192.CB, (T0384)P218.CB) [> 4.1615 = 6.9358 < 9.0166] w=0.1316 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)L247.CB) [> 3.7882 = 6.3136 < 8.2077] w=0.1315 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)T197.CB) [> 3.9025 = 6.5041 < 8.4553] w=0.1306 to align # Constraint # added constraint: constraint((T0384)T130.CB, (T0384)F284.CB) [> 3.6937 = 6.1562 < 8.0030] w=0.1298 to align # Constraint # added constraint: constraint((T0384)G10.CA, (T0384)R45.CB) [> 4.5663 = 7.6106 < 9.8937] w=0.1297 to align # Constraint # added constraint: constraint((T0384)I180.CB, (T0384)H199.CB) [> 3.6631 = 6.1052 < 7.9368] w=0.1291 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)N210.CB) [> 4.3733 = 7.2889 < 9.4755] w=0.1290 to align # Constraint # added constraint: constraint((T0384)Q27.CB, (T0384)Q50.CB) [> 4.3977 = 7.3295 < 9.5283] w=0.1282 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)I288.CB) [> 3.9729 = 6.6216 < 8.6080] w=0.1280 to align # Constraint # added constraint: constraint((T0384)R121.CB, (T0384)Y181.CB) [> 4.3412 = 7.2353 < 9.4059] w=0.1274 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)L268.CB) [> 3.5064 = 5.8440 < 7.5972] w=0.1273 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)L310.CB) [> 3.2145 = 5.3576 < 6.9648] w=0.1265 to align # Constraint # added constraint: constraint((T0384)P71.CB, (T0384)V96.CB) [> 4.2395 = 7.0658 < 9.1856] w=0.1262 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)G213.CA) [> 3.9598 = 6.5997 < 8.5796] w=0.1256 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)F145.CB) [> 3.7437 = 6.2396 < 8.1114] w=0.1256 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)L300.CB) [> 4.4483 = 7.4138 < 9.6379] w=0.1252 to align # Constraint # added constraint: constraint((T0384)H15.CB, (T0384)T278.CB) [> 2.7232 = 4.5387 < 5.9003] w=0.1250 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)L234.CB) [> 4.5062 = 7.5104 < 9.7635] w=0.1244 to align # Constraint # added constraint: constraint((T0384)A95.CB, (T0384)H307.CB) [> 3.6876 = 6.1459 < 7.9897] w=0.1244 to align # Constraint # added constraint: constraint((T0384)A95.CB, (T0384)A303.CB) [> 3.1649 = 5.2748 < 6.8573] w=0.1244 to align # Constraint # added constraint: constraint((T0384)S97.CB, (T0384)M176.CB) [> 4.2311 = 7.0518 < 9.1673] w=0.1244 to align # Constraint # added constraint: constraint((T0384)L183.CB, (T0384)L310.CB) [> 3.9343 = 6.5572 < 8.5244] w=0.1244 to align # Constraint # added constraint: constraint((T0384)A95.CB, (T0384)I116.CB) [> 4.5504 = 7.5839 < 9.8591] w=0.1242 to align # Constraint # added constraint: constraint((T0384)W102.CB, (T0384)A303.CB) [> 4.2147 = 7.0245 < 9.1319] w=0.1242 to align # Constraint # added constraint: constraint((T0384)H75.CB, (T0384)W102.CB) [> 4.3290 = 7.2150 < 9.3795] w=0.1239 to align # Constraint # added constraint: constraint((T0384)L91.CB, (T0384)W102.CB) [> 3.6669 = 6.1114 < 7.9448] w=0.1235 to align # Constraint # added constraint: constraint((T0384)I180.CB, (T0384)V306.CB) [> 3.5552 = 5.9253 < 7.7029] w=0.1233 to align # Constraint # added constraint: constraint((T0384)A11.CB, (T0384)D156.CB) [> 3.8104 = 6.3507 < 8.2559] w=0.1231 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)A193.CB) [> 3.7828 = 6.3047 < 8.1961] w=0.1228 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)T197.CB) [> 4.4045 = 7.3408 < 9.5430] w=0.1226 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)T197.CB) [> 3.3662 = 5.6103 < 7.2934] w=0.1226 to align # Constraint # added constraint: constraint((T0384)M287.CB, (T0384)A303.CB) [> 3.0925 = 5.1541 < 6.7004] w=0.1226 to align # Constraint # added constraint: constraint((T0384)Y184.CB, (T0384)T197.CB) [> 3.6516 = 6.0859 < 7.9117] w=0.1225 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)M313.CB) [> 3.8352 = 6.3920 < 8.3096] w=0.1222 to align # Constraint # added constraint: constraint((T0384)V140.CB, (T0384)Y217.CB) [> 3.9280 = 6.5466 < 8.5106] w=0.1217 to align # Constraint # added constraint: constraint((T0384)A143.CB, (T0384)A196.CB) [> 4.2063 = 7.0105 < 9.1136] w=0.1215 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)F128.CB) [> 2.8513 = 4.7521 < 6.1778] w=0.1212 to align # Constraint # added constraint: constraint((T0384)G179.CA, (T0384)I224.CB) [> 4.0362 = 6.7270 < 8.7451] w=0.1204 to align # Constraint # added constraint: constraint((T0384)I214.CB, (T0384)K225.CB) [> 4.5402 = 7.5671 < 9.8372] w=0.1200 to align # Constraint # added constraint: constraint((T0384)H88.CB, (T0384)F284.CB) [> 4.2130 = 7.0216 < 9.1281] w=0.1200 to align # Constraint # added constraint: constraint((T0384)S23.CB, (T0384)V281.CB) [> 3.1930 = 5.3216 < 6.9181] w=0.1200 to align # Constraint # added constraint: constraint((T0384)A19.CB, (T0384)H307.CB) [> 3.1009 = 5.1682 < 6.7187] w=0.1192 to align # Constraint # added constraint: constraint((T0384)A20.CB, (T0384)H307.CB) [> 3.5448 = 5.9079 < 7.6803] w=0.1192 to align # Constraint # added constraint: constraint((T0384)Y26.CB, (T0384)L310.CB) [> 3.7897 = 6.3161 < 8.2110] w=0.1192 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)V306.CB) [> 3.6092 = 6.0154 < 7.8200] w=0.1192 to align # Constraint # added constraint: constraint((T0384)I12.CB, (T0384)W299.CB) [> 3.7133 = 6.1889 < 8.0455] w=0.1192 to align # Constraint # added constraint: constraint((T0384)L91.CB, (T0384)A120.CB) [> 4.2468 = 7.0781 < 9.2015] w=0.1189 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)L183.CB) [> 3.9874 = 6.6457 < 8.6394] w=0.1189 to align # Constraint # added constraint: constraint((T0384)G10.CA, (T0384)S70.CB) [> 4.6718 = 7.7863 < 10.1221] w=0.1189 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)Y296.CB) [> 2.8702 = 4.7837 < 6.2189] w=0.1181 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)T298.CB) [> 3.6138 = 6.0230 < 7.8299] w=0.1179 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)A30.CB) [> 4.5735 = 7.6225 < 9.9093] w=0.1179 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)G211.CA) [> 4.1645 = 6.9409 < 9.0231] w=0.1174 to align # Constraint # added constraint: constraint((T0384)P99.CB, (T0384)H307.CB) [> 3.2980 = 5.4967 < 7.1458] w=0.1171 to align # Constraint # added constraint: constraint((T0384)P99.CB, (T0384)Y311.CB) [> 3.0683 = 5.1138 < 6.6480] w=0.1171 to align # Constraint # added constraint: constraint((T0384)I106.CB, (T0384)L300.CB) [> 3.1686 = 5.2810 < 6.8653] w=0.1171 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)A303.CB) [> 2.6607 = 4.4346 < 5.7650] w=0.1171 to align # Constraint # added constraint: constraint((T0384)A143.CB, (T0384)I238.CB) [> 3.7302 = 6.2171 < 8.0822] w=0.1171 to align # Constraint # added constraint: constraint((T0384)A143.CB, (T0384)Y239.CB) [> 4.4015 = 7.3358 < 9.5365] w=0.1171 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)Q221.CB) [> 3.6750 = 6.1251 < 7.9626] w=0.1171 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)Y239.CB) [> 3.2587 = 5.4312 < 7.0606] w=0.1171 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)Q221.CB) [> 3.8502 = 6.4170 < 8.3421] w=0.1171 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)E237.CB) [> 4.1219 = 6.8698 < 8.9307] w=0.1171 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)V222.CB) [> 3.6586 = 6.0976 < 7.9269] w=0.1171 to align # Constraint # added constraint: constraint((T0384)Y198.CB, (T0384)M313.CB) [> 3.1891 = 5.3152 < 6.9098] w=0.1171 to align # Constraint # added constraint: constraint((T0384)V187.CB, (T0384)S305.CB) [> 4.0987 = 6.8312 < 8.8806] w=0.1171 to align # Constraint # added constraint: constraint((T0384)Y184.CB, (T0384)V306.CB) [> 3.0417 = 5.0695 < 6.5903] w=0.1171 to align # Constraint # added constraint: constraint((T0384)L183.CB, (T0384)L309.CB) [> 3.6038 = 6.0063 < 7.8082] w=0.1171 to align # Constraint # added constraint: constraint((T0384)L183.CB, (T0384)V306.CB) [> 3.3378 = 5.5631 < 7.2320] w=0.1171 to align # Constraint # added constraint: constraint((T0384)I180.CB, (T0384)L310.CB) [> 3.6179 = 6.0299 < 7.8389] w=0.1171 to align # Constraint # added constraint: constraint((T0384)L178.CB, (T0384)A226.CB) [> 3.5490 = 5.9149 < 7.6894] w=0.1171 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)S232.CB) [> 3.8643 = 6.4405 < 8.3727] w=0.1171 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)K225.CB) [> 3.6793 = 6.1321 < 7.9717] w=0.1171 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)A226.CB) [> 3.6593 = 6.0988 < 7.9284] w=0.1171 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)L234.CB) [> 4.2721 = 7.1202 < 9.2562] w=0.1171 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)A226.CB) [> 3.9323 = 6.5539 < 8.5201] w=0.1171 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)K225.CB) [> 3.6957 = 6.1596 < 8.0074] w=0.1171 to align # Constraint # added constraint: constraint((T0384)N194.CB, (T0384)L215.CB) [> 3.6433 = 6.0722 < 7.8939] w=0.1171 to align # Constraint # added constraint: constraint((T0384)C236.CB, (T0384)L247.CB) [> 2.6723 = 4.4539 < 5.7901] w=0.1170 to align # Constraint # added constraint: constraint((T0384)E237.CB, (T0384)L247.CB) [> 4.4859 = 7.4766 < 9.7195] w=0.1170 to align # Constraint # added constraint: constraint((T0384)L247.CB, (T0384)A256.CB) [> 4.2552 = 7.0920 < 9.2196] w=0.1170 to align # Constraint # added constraint: constraint((T0384)L245.CB, (T0384)A256.CB) [> 4.1545 = 6.9241 < 9.0014] w=0.1170 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)M176.CB) [> 2.9618 = 4.9363 < 6.4172] w=0.1170 to align # Constraint # added constraint: constraint((T0384)K192.CB, (T0384)Y217.CB) [> 3.8515 = 6.4192 < 8.3449] w=0.1170 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)Y217.CB) [> 3.9606 = 6.6009 < 8.5812] w=0.1169 to align # Constraint # added constraint: constraint((T0384)Y184.CB, (T0384)A196.CB) [> 3.7361 = 6.2268 < 8.0949] w=0.1153 to align # Constraint # added constraint: constraint((T0384)G211.CA, (T0384)I224.CB) [> 3.7318 = 6.2196 < 8.0855] w=0.1151 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)Y150.CB) [> 3.8983 = 6.4972 < 8.4463] w=0.1148 to align # Constraint # added constraint: constraint((T0384)A11.CB, (T0384)P155.CB) [> 4.0247 = 6.7079 < 8.7202] w=0.1147 to align # Constraint # added constraint: constraint((T0384)Y32.CB, (T0384)V66.CB) [> 4.6631 = 7.7719 < 10.1035] w=0.1146 to align # Constraint # added constraint: constraint((T0384)D208.CB, (T0384)N229.CB) [> 3.4202 = 5.7004 < 7.4105] w=0.1141 to align # Constraint # added constraint: constraint((T0384)V66.CB, (T0384)L91.CB) [> 4.1011 = 6.8351 < 8.8856] w=0.1140 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)I214.CB) [> 4.4681 = 7.4468 < 9.6809] w=0.1133 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)L309.CB) [> 4.0942 = 6.8236 < 8.8707] w=0.1123 to align # Constraint # added constraint: constraint((T0384)I12.CB, (T0384)D302.CB) [> 3.9052 = 6.5086 < 8.4612] w=0.1119 to align # Constraint # added constraint: constraint((T0384)A11.CB, (T0384)W299.CB) [> 3.2681 = 5.4468 < 7.0808] w=0.1119 to align # Constraint # added constraint: constraint((T0384)S70.CB, (T0384)K93.CB) [> 3.5827 = 5.9711 < 7.7624] w=0.1112 to align # Constraint # added constraint: constraint((T0384)A69.CB, (T0384)A95.CB) [> 3.8065 = 6.3442 < 8.2474] w=0.1108 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)H199.CB) [> 3.3325 = 5.5541 < 7.2204] w=0.1098 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)L245.CB) [> 4.1589 = 6.9315 < 9.0110] w=0.1098 to align # Constraint # added constraint: constraint((T0384)D64.CB, (T0384)I288.CB) [> 4.1598 = 6.9330 < 9.0128] w=0.1098 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)F170.CB) [> 3.7305 = 6.2174 < 8.0827] w=0.1098 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)C236.CB) [> 4.5126 = 7.5210 < 9.7774] w=0.1098 to align # Constraint # added constraint: constraint((T0384)Q139.CB, (T0384)D242.CB) [> 4.0848 = 6.8080 < 8.8504] w=0.1098 to align # Constraint # added constraint: constraint((T0384)G142.CA, (T0384)T240.CB) [> 2.9190 = 4.8650 < 6.3244] w=0.1098 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)V222.CB) [> 3.4476 = 5.7460 < 7.4698] w=0.1098 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)H223.CB) [> 3.7898 = 6.3164 < 8.2113] w=0.1098 to align # Constraint # added constraint: constraint((T0384)C236.CB, (T0384)T246.CB) [> 4.3568 = 7.2614 < 9.4398] w=0.1098 to align # Constraint # added constraint: constraint((T0384)P235.CB, (T0384)N248.CB) [> 2.7555 = 4.5925 < 5.9702] w=0.1098 to align # Constraint # added constraint: constraint((T0384)P235.CB, (T0384)L247.CB) [> 4.1832 = 6.9721 < 9.0637] w=0.1098 to align # Constraint # added constraint: constraint((T0384)P235.CB, (T0384)T246.CB) [> 4.3448 = 7.2413 < 9.4137] w=0.1098 to align # Constraint # added constraint: constraint((T0384)L234.CB, (T0384)I250.CB) [> 3.4053 = 5.6755 < 7.3782] w=0.1098 to align # Constraint # added constraint: constraint((T0384)L234.CB, (T0384)T249.CB) [> 3.0796 = 5.1326 < 6.6724] w=0.1098 to align # Constraint # added constraint: constraint((T0384)L234.CB, (T0384)N248.CB) [> 4.0648 = 6.7746 < 8.8070] w=0.1098 to align # Constraint # added constraint: constraint((T0384)A174.CB, (T0384)I207.CB) [> 4.6102 = 7.6837 < 9.9888] w=0.1098 to align # Constraint # added constraint: constraint((T0384)M154.CB, (T0384)K228.CB) [> 3.2139 = 5.3565 < 6.9634] w=0.1098 to align # Constraint # added constraint: constraint((T0384)A193.CB, (T0384)V222.CB) [> 4.0915 = 6.8192 < 8.8650] w=0.1098 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)Y239.CB) [> 3.5158 = 5.8597 < 7.6176] w=0.1098 to align # Constraint # added constraint: constraint((T0384)G191.CA, (T0384)Y217.CB) [> 4.1459 = 6.9098 < 8.9827] w=0.1098 to align # Constraint # added constraint: constraint((T0384)P71.CB, (T0384)F170.CB) [> 3.3157 = 5.5262 < 7.1841] w=0.1097 to align # Constraint # added constraint: constraint((T0384)L245.CB, (T0384)I257.CB) [> 3.7070 = 6.1783 < 8.0318] w=0.1097 to align # Constraint # added constraint: constraint((T0384)L245.CB, (T0384)F258.CB) [> 4.3196 = 7.1993 < 9.3591] w=0.1097 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)E237.CB) [> 3.4465 = 5.7442 < 7.4674] w=0.1096 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)V306.CB) [> 3.2073 = 5.3455 < 6.9492] w=0.1095 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)D302.CB) [> 4.0396 = 6.7327 < 8.7525] w=0.1095 to align # Constraint # added constraint: constraint((T0384)P99.CB, (T0384)E118.CB) [> 3.9647 = 6.6079 < 8.5902] w=0.1094 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)I224.CB) [> 4.3912 = 7.3187 < 9.5143] w=0.1093 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)A186.CB) [> 3.7098 = 6.1830 < 8.0379] w=0.1091 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)H199.CB) [> 3.8893 = 6.4822 < 8.4269] w=0.1088 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)V306.CB) [> 3.5249 = 5.8749 < 7.6373] w=0.1086 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)Y217.CB) [> 4.4055 = 7.3425 < 9.5452] w=0.1086 to align # Constraint # added constraint: constraint((T0384)A200.CB, (T0384)L209.CB) [> 4.2909 = 7.1515 < 9.2969] w=0.1085 to align # Constraint # added constraint: constraint((T0384)M154.CB, (T0384)L203.CB) [> 4.1573 = 6.9288 < 9.0075] w=0.1083 to align # Constraint # added constraint: constraint((T0384)F166.CB, (T0384)Q202.CB) [> 4.4052 = 7.3420 < 9.5446] w=0.1080 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)L215.CB) [> 4.4347 = 7.3912 < 9.6086] w=0.1080 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)A196.CB) [> 3.9944 = 6.6573 < 8.6545] w=0.1080 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)M313.CB) [> 4.3274 = 7.2124 < 9.3761] w=0.1075 to align # Constraint # added constraint: constraint((T0384)Y32.CB, (T0384)Q78.CB) [> 4.3373 = 7.2288 < 9.3975] w=0.1072 to align # Constraint # added constraint: constraint((T0384)F170.CB, (T0384)D204.CB) [> 4.0959 = 6.8264 < 8.8744] w=0.1072 to align # Constraint # added constraint: constraint((T0384)L157.CB, (T0384)G173.CA) [> 3.5752 = 5.9587 < 7.7463] w=0.1072 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)I131.CB) [> 4.3331 = 7.2219 < 9.3885] w=0.1063 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)A185.CB) [> 3.6401 = 6.0669 < 7.8869] w=0.1061 to align # Constraint # added constraint: constraint((T0384)S23.CB, (T0384)H307.CB) [> 3.6316 = 6.0527 < 7.8685] w=0.1047 to align # Constraint # added constraint: constraint((T0384)D64.CB, (T0384)R314.CB) [> 4.0268 = 6.7113 < 8.7247] w=0.1046 to align # Constraint # added constraint: constraint((T0384)H88.CB, (T0384)M313.CB) [> 3.4121 = 5.6867 < 7.3928] w=0.1043 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)N210.CB) [> 4.2742 = 7.1237 < 9.2608] w=0.1042 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)K225.CB) [> 4.5611 = 7.6019 < 9.8825] w=0.1041 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)I224.CB) [> 4.0068 = 6.6781 < 8.6815] w=0.1039 to align # Constraint # added constraint: constraint((T0384)A174.CB, (T0384)L209.CB) [> 3.7122 = 6.1870 < 8.0431] w=0.1038 to align # Constraint # added constraint: constraint((T0384)A174.CB, (T0384)G211.CA) [> 4.0484 = 6.7473 < 8.7715] w=0.1038 to align # Constraint # added constraint: constraint((T0384)V187.CB, (T0384)T197.CB) [> 4.2541 = 7.0901 < 9.2171] w=0.1034 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)L209.CB) [> 3.8838 = 6.4730 < 8.4149] w=0.1034 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)A285.CB) [> 4.0342 = 6.7237 < 8.7409] w=0.1031 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)Y217.CB) [> 4.2588 = 7.0981 < 9.2275] w=0.1026 to align # Constraint # added constraint: constraint((T0384)L141.CB, (T0384)G243.CA) [> 3.5279 = 5.8798 < 7.6438] w=0.1024 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)A171.CB) [> 3.0372 = 5.0621 < 6.5807] w=0.1024 to align # Constraint # added constraint: constraint((T0384)N210.CB, (T0384)I230.CB) [> 4.2755 = 7.1258 < 9.2636] w=0.1024 to align # Constraint # added constraint: constraint((T0384)A143.CB, (T0384)T240.CB) [> 3.3847 = 5.6412 < 7.3336] w=0.1024 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)C236.CB) [> 4.4982 = 7.4970 < 9.7461] w=0.1024 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)C236.CB) [> 4.4119 = 7.3531 < 9.5590] w=0.1024 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)I230.CB) [> 3.3588 = 5.5981 < 7.2775] w=0.1024 to align # Constraint # added constraint: constraint((T0384)G173.CA, (T0384)D208.CB) [> 3.2068 = 5.3447 < 6.9481] w=0.1024 to align # Constraint # added constraint: constraint((T0384)Y198.CB, (T0384)T316.CB) [> 2.6659 = 4.4431 < 5.7761] w=0.1024 to align # Constraint # added constraint: constraint((T0384)A200.CB, (T0384)A317.CB) [> 2.9028 = 4.8380 < 6.2895] w=0.1024 to align # Constraint # added constraint: constraint((T0384)G213.CA, (T0384)M313.CB) [> 3.9307 = 6.5512 < 8.5166] w=0.1024 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)S305.CB) [> 3.4063 = 5.6772 < 7.3804] w=0.1022 to align # Constraint # added constraint: constraint((T0384)G24.CA, (T0384)A282.CB) [> 3.6003 = 6.0005 < 7.8007] w=0.1022 to align # Constraint # added constraint: constraint((T0384)L141.CB, (T0384)L189.CB) [> 3.8916 = 6.4860 < 8.4318] w=0.1014 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)L309.CB) [> 3.4290 = 5.7150 < 7.4295] w=0.1013 to align # Constraint # added constraint: constraint((T0384)A11.CB, (T0384)A69.CB) [> 4.5188 = 7.5313 < 9.7907] w=0.1013 to align # Constraint # added constraint: constraint((T0384)A40.CB, (T0384)I49.CB) [> 4.0820 = 6.8034 < 8.8444] w=0.1012 to align # Constraint # added constraint: constraint((T0384)A143.CB, (T0384)A193.CB) [> 3.6100 = 6.0167 < 7.8217] w=0.1007 to align # Constraint # added constraint: constraint((T0384)F59.CB, (T0384)Q78.CB) [> 3.4613 = 5.7689 < 7.4996] w=0.1006 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)T129.CB) [> 3.2436 = 5.4060 < 7.0278] w=0.1005 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)A185.CB) [> 3.7252 = 6.2087 < 8.0713] w=0.0998 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)L91.CB) [> 3.9976 = 6.6626 < 8.6614] w=0.0994 to align # Constraint # added constraint: constraint((T0384)D64.CB, (T0384)V89.CB) [> 3.8810 = 6.4684 < 8.4089] w=0.0994 to align # Constraint # added constraint: constraint((T0384)G8.CA, (T0384)T38.CB) [> 4.4838 = 7.4729 < 9.7148] w=0.0991 to align # Constraint # added constraint: constraint((T0384)G5.CA, (T0384)S62.CB) [> 4.5515 = 7.5858 < 9.8615] w=0.0991 to align # Constraint # added constraint: constraint((T0384)P155.CB, (T0384)G173.CA) [> 3.4158 = 5.6929 < 7.4008] w=0.0974 to align # Constraint # added constraint: constraint((T0384)E25.CB, (T0384)H286.CB) [> 4.0006 = 6.6676 < 8.6679] w=0.0965 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)A303.CB) [> 4.5625 = 7.6041 < 9.8854] w=0.0960 to align # Constraint # added constraint: constraint((T0384)S167.CB, (T0384)I207.CB) [> 4.1788 = 6.9646 < 9.0540] w=0.0951 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)A171.CB) [> 3.9955 = 6.6592 < 8.6569] w=0.0951 to align # Constraint # added constraint: constraint((T0384)L141.CB, (T0384)T240.CB) [> 2.5140 = 4.1899 < 5.4469] w=0.0951 to align # Constraint # added constraint: constraint((T0384)G142.CA, (T0384)T241.CB) [> 3.2371 = 5.3951 < 7.0136] w=0.0951 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)V222.CB) [> 3.6628 = 6.1047 < 7.9361] w=0.0951 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)H223.CB) [> 4.5051 = 7.5085 < 9.7611] w=0.0951 to align # Constraint # added constraint: constraint((T0384)Y181.CB, (T0384)L234.CB) [> 4.2348 = 7.0580 < 9.1754] w=0.0951 to align # Constraint # added constraint: constraint((T0384)K93.CB, (T0384)Y184.CB) [> 4.4929 = 7.4882 < 9.7347] w=0.0951 to align # Constraint # added constraint: constraint((T0384)L175.CB, (T0384)L310.CB) [> 3.4009 = 5.6681 < 7.3685] w=0.0951 to align # Constraint # added constraint: constraint((T0384)V96.CB, (T0384)A120.CB) [> 3.8194 = 6.3657 < 8.2754] w=0.0950 to align # Constraint # added constraint: constraint((T0384)P99.CB, (T0384)L309.CB) [> 3.8810 = 6.4683 < 8.4088] w=0.0947 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)L309.CB) [> 3.4954 = 5.8257 < 7.5734] w=0.0940 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)A196.CB) [> 4.4134 = 7.3556 < 9.5623] w=0.0938 to align # Constraint # added constraint: constraint((T0384)A171.CB, (T0384)I180.CB) [> 4.1561 = 6.9269 < 9.0050] w=0.0936 to align # Constraint # added constraint: constraint((T0384)A143.CB, (T0384)Q221.CB) [> 2.9264 = 4.8774 < 6.3406] w=0.0936 to align # Constraint # added constraint: constraint((T0384)F170.CB, (T0384)Q202.CB) [> 4.1676 = 6.9460 < 9.0299] w=0.0932 to align # Constraint # added constraint: constraint((T0384)I106.CB, (T0384)R188.CB) [> 3.3759 = 5.6265 < 7.3145] w=0.0931 to align # Constraint # added constraint: constraint((T0384)G172.CA, (T0384)D204.CB) [> 3.3212 = 5.5354 < 7.1960] w=0.0931 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)A95.CB) [> 3.9480 = 6.5800 < 8.5540] w=0.0931 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)Y296.CB) [> 3.7243 = 6.2072 < 8.0694] w=0.0928 to align # Constraint # added constraint: constraint((T0384)M176.CB, (T0384)V281.CB) [> 3.9430 = 6.5717 < 8.5432] w=0.0927 to align # Constraint # added constraint: constraint((T0384)H124.CB, (T0384)L183.CB) [> 3.9995 = 6.6659 < 8.6656] w=0.0926 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)K225.CB) [> 3.4771 = 5.7953 < 7.5338] w=0.0917 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)L183.CB) [> 3.9702 = 6.6171 < 8.6022] w=0.0915 to align # Constraint # added constraint: constraint((T0384)L157.CB, (T0384)A174.CB) [> 3.9752 = 6.6254 < 8.6130] w=0.0907 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)H199.CB) [> 4.3314 = 7.2190 < 9.3847] w=0.0904 to align # Constraint # added constraint: constraint((T0384)I12.CB, (T0384)V306.CB) [> 4.4185 = 7.3642 < 9.5734] w=0.0901 to align # Constraint # added constraint: constraint((T0384)L28.CB, (T0384)A43.CB) [> 4.6204 = 7.7007 < 10.0109] w=0.0889 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)D302.CB) [> 4.0973 = 6.8288 < 8.8775] w=0.0887 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)A285.CB) [> 3.4628 = 5.7713 < 7.5027] w=0.0886 to align # Constraint # added constraint: constraint((T0384)G173.CA, (T0384)I207.CB) [> 2.3599 = 3.9331 < 5.1131] w=0.0878 to align # Constraint # added constraint: constraint((T0384)G172.CA, (T0384)D208.CB) [> 4.1629 = 6.9382 < 9.0197] w=0.0878 to align # Constraint # added constraint: constraint((T0384)G172.CA, (T0384)I207.CB) [> 3.1517 = 5.2528 < 6.8286] w=0.0878 to align # Constraint # added constraint: constraint((T0384)F166.CB, (T0384)I207.CB) [> 3.7788 = 6.2980 < 8.1875] w=0.0878 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)K225.CB) [> 4.1455 = 6.9092 < 8.9819] w=0.0878 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)Y220.CB) [> 4.0958 = 6.8264 < 8.8743] w=0.0878 to align # Constraint # added constraint: constraint((T0384)T246.CB, (T0384)A256.CB) [> 3.4894 = 5.8156 < 7.5603] w=0.0878 to align # Constraint # added constraint: constraint((T0384)T246.CB, (T0384)F258.CB) [> 4.0880 = 6.8134 < 8.8574] w=0.0878 to align # Constraint # added constraint: constraint((T0384)P235.CB, (T0384)T249.CB) [> 4.4049 = 7.3414 < 9.5438] w=0.0878 to align # Constraint # added constraint: constraint((T0384)Y198.CB, (T0384)A317.CB) [> 2.9358 = 4.8931 < 6.3610] w=0.0878 to align # Constraint # added constraint: constraint((T0384)T197.CB, (T0384)T316.CB) [> 3.5634 = 5.9391 < 7.7208] w=0.0878 to align # Constraint # added constraint: constraint((T0384)L189.CB, (T0384)I238.CB) [> 3.1704 = 5.2840 < 6.8692] w=0.0878 to align # Constraint # added constraint: constraint((T0384)A186.CB, (T0384)H223.CB) [> 3.6961 = 6.1602 < 8.0083] w=0.0878 to align # Constraint # added constraint: constraint((T0384)A185.CB, (T0384)C236.CB) [> 3.6916 = 6.1527 < 7.9985] w=0.0878 to align # Constraint # added constraint: constraint((T0384)G179.CA, (T0384)K225.CB) [> 4.4923 = 7.4872 < 9.7334] w=0.0878 to align # Constraint # added constraint: constraint((T0384)L178.CB, (T0384)G227.CA) [> 3.8536 = 6.4226 < 8.3494] w=0.0878 to align # Constraint # added constraint: constraint((T0384)L175.CB, (T0384)M313.CB) [> 3.7957 = 6.3261 < 8.2239] w=0.0878 to align # Constraint # added constraint: constraint((T0384)L175.CB, (T0384)A226.CB) [> 3.0730 = 5.1216 < 6.6581] w=0.0878 to align # Constraint # added constraint: constraint((T0384)A174.CB, (T0384)G227.CA) [> 2.6400 = 4.4000 < 5.7200] w=0.0878 to align # Constraint # added constraint: constraint((T0384)A174.CB, (T0384)N210.CB) [> 3.8444 = 6.4074 < 8.3296] w=0.0878 to align # Constraint # added constraint: constraint((T0384)G173.CA, (T0384)L209.CB) [> 4.4702 = 7.4503 < 9.6854] w=0.0878 to align # Constraint # added constraint: constraint((T0384)L4.CB, (T0384)I90.CB) [> 4.5241 = 7.5402 < 9.8023] w=0.0878 to align # Constraint # added constraint: constraint((T0384)K93.CB, (T0384)Y181.CB) [> 3.7505 = 6.2508 < 8.1260] w=0.0878 to align # Constraint # added constraint: constraint((T0384)L245.CB, (T0384)S255.CB) [> 3.9669 = 6.6115 < 8.5949] w=0.0878 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)N194.CB) [> 3.9799 = 6.6331 < 8.6231] w=0.0872 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)D144.CB) [> 3.5890 = 5.9817 < 7.7762] w=0.0867 to align # Constraint # added constraint: constraint((T0384)M287.CB, (T0384)L300.CB) [> 4.2231 = 7.0385 < 9.1500] w=0.0866 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)A174.CB) [> 4.4848 = 7.4747 < 9.7171] w=0.0865 to align # Constraint # added constraint: constraint((T0384)L178.CB, (T0384)Y198.CB) [> 3.6296 = 6.0494 < 7.8642] w=0.0864 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)Y181.CB) [> 3.2200 = 5.3666 < 6.9766] w=0.0858 to align # Constraint # added constraint: constraint((T0384)R34.CB, (T0384)R45.CB) [> 4.4125 = 7.3541 < 9.5604] w=0.0858 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)Q297.CB) [> 4.0285 = 6.7142 < 8.7285] w=0.0857 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)A256.CB) [> 2.9125 = 4.8543 < 6.3105] w=0.0834 to align # Constraint # added constraint: constraint((T0384)I207.CB, (T0384)W299.CB) [> 3.6134 = 6.0223 < 7.8289] w=0.0827 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)H223.CB) [> 2.7695 = 4.6158 < 6.0005] w=0.0826 to align # Constraint # added constraint: constraint((T0384)N210.CB, (T0384)L268.CB) [> 3.8143 = 6.3572 < 8.2644] w=0.0819 to align # Constraint # added constraint: constraint((T0384)P71.CB, (T0384)N164.CB) [> 2.7441 = 4.5735 < 5.9455] w=0.0805 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)L300.CB) [> 3.9927 = 6.6544 < 8.6508] w=0.0805 to align # Constraint # added constraint: constraint((T0384)G243.CA, (T0384)T259.CB) [> 3.3059 = 5.5099 < 7.1628] w=0.0805 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)I238.CB) [> 2.8515 = 4.7526 < 6.1783] w=0.0805 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)D177.CB) [> 4.0939 = 6.8232 < 8.8702] w=0.0805 to align # Constraint # added constraint: constraint((T0384)T244.CB, (T0384)F258.CB) [> 3.4817 = 5.8029 < 7.5437] w=0.0804 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)L178.CB) [> 4.0454 = 6.7423 < 8.7650] w=0.0803 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)T298.CB) [> 3.6703 = 6.1172 < 7.9524] w=0.0803 to align # Constraint # added constraint: constraint((T0384)G8.CA, (T0384)A39.CB) [> 4.4196 = 7.3660 < 9.5759] w=0.0802 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)K93.CB) [> 4.0426 = 6.7377 < 8.7591] w=0.0801 to align # Constraint # added constraint: constraint((T0384)V165.CB, (T0384)D177.CB) [> 3.3445 = 5.5741 < 7.2463] w=0.0801 to align # Constraint # added constraint: constraint((T0384)A159.CB, (T0384)F170.CB) [> 3.8673 = 6.4455 < 8.3792] w=0.0801 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)N194.CB) [> 3.8875 = 6.4792 < 8.4229] w=0.0800 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)A303.CB) [> 3.7945 = 6.3241 < 8.2213] w=0.0799 to align # Constraint # added constraint: constraint((T0384)L91.CB, (T0384)F115.CB) [> 4.0382 = 6.7304 < 8.7495] w=0.0799 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)V222.CB) [> 4.3743 = 7.2905 < 9.4777] w=0.0798 to align # Constraint # added constraint: constraint((T0384)L157.CB, (T0384)F166.CB) [> 4.0844 = 6.8073 < 8.8495] w=0.0795 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)Y198.CB) [> 3.9265 = 6.5441 < 8.5073] w=0.0794 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)G211.CA) [> 3.4971 = 5.8285 < 7.5770] w=0.0794 to align # Constraint # added constraint: constraint((T0384)Y184.CB, (T0384)Y198.CB) [> 3.9336 = 6.5559 < 8.5227] w=0.0791 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)L175.CB) [> 4.1774 = 6.9623 < 9.0509] w=0.0785 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)I180.CB) [> 3.9496 = 6.5826 < 8.5574] w=0.0784 to align # Constraint # added constraint: constraint((T0384)M176.CB, (T0384)F284.CB) [> 4.1322 = 6.8870 < 8.9531] w=0.0783 to align # Constraint # added constraint: constraint((T0384)L158.CB, (T0384)G173.CA) [> 3.5737 = 5.9562 < 7.7431] w=0.0772 to align # Constraint # added constraint: constraint((T0384)I207.CB, (T0384)N229.CB) [> 4.1160 = 6.8600 < 8.9180] w=0.0765 to align # Constraint # added constraint: constraint((T0384)I207.CB, (T0384)I230.CB) [> 3.6509 = 6.0848 < 7.9103] w=0.0765 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)G213.CA) [> 3.4176 = 5.6960 < 7.4047] w=0.0750 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)G211.CA) [> 3.2765 = 5.4608 < 7.0991] w=0.0750 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)F145.CB) [> 3.7537 = 6.2562 < 8.1331] w=0.0749 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)Y296.CB) [> 3.0024 = 5.0040 < 6.5052] w=0.0745 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)G213.CA) [> 4.3454 = 7.2423 < 9.4150] w=0.0741 to align # Constraint # added constraint: constraint((T0384)V187.CB, (T0384)Y198.CB) [> 3.9371 = 6.5618 < 8.5304] w=0.0734 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)I224.CB) [> 3.2627 = 5.4378 < 7.0692] w=0.0732 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)Y220.CB) [> 4.0719 = 6.7865 < 8.8225] w=0.0732 to align # Constraint # added constraint: constraint((T0384)V140.CB, (T0384)T240.CB) [> 3.4668 = 5.7780 < 7.5114] w=0.0732 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)T240.CB) [> 4.6108 = 7.6847 < 9.9901] w=0.0732 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)Q267.CB) [> 3.6208 = 6.0346 < 7.8450] w=0.0732 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)L300.CB) [> 2.9966 = 4.9943 < 6.4926] w=0.0732 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)W299.CB) [> 3.9430 = 6.5716 < 8.5431] w=0.0732 to align # Constraint # added constraint: constraint((T0384)M154.CB, (T0384)V165.CB) [> 4.4281 = 7.3801 < 9.5942] w=0.0732 to align # Constraint # added constraint: constraint((T0384)G243.CA, (T0384)F258.CB) [> 3.9160 = 6.5266 < 8.4846] w=0.0732 to align # Constraint # added constraint: constraint((T0384)G211.CA, (T0384)A317.CB) [> 4.2805 = 7.1342 < 9.2745] w=0.0732 to align # Constraint # added constraint: constraint((T0384)T197.CB, (T0384)A323.CB) [> 4.1130 = 6.8550 < 8.9115] w=0.0732 to align # Constraint # added constraint: constraint((T0384)A196.CB, (T0384)A323.CB) [> 3.3329 = 5.5548 < 7.2212] w=0.0732 to align # Constraint # added constraint: constraint((T0384)A196.CB, (T0384)E322.CB) [> 3.9537 = 6.5895 < 8.5664] w=0.0732 to align # Constraint # added constraint: constraint((T0384)D195.CB, (T0384)A323.CB) [> 4.0795 = 6.7992 < 8.8389] w=0.0732 to align # Constraint # added constraint: constraint((T0384)V187.CB, (T0384)L309.CB) [> 4.4323 = 7.3871 < 9.6032] w=0.0732 to align # Constraint # added constraint: constraint((T0384)V165.CB, (T0384)I207.CB) [> 3.8108 = 6.3513 < 8.2567] w=0.0732 to align # Constraint # added constraint: constraint((T0384)L157.CB, (T0384)K228.CB) [> 3.4094 = 5.6823 < 7.3870] w=0.0732 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)N233.CB) [> 3.2865 = 5.4775 < 7.1208] w=0.0732 to align # Constraint # added constraint: constraint((T0384)L141.CB, (T0384)I238.CB) [> 4.0216 = 6.7026 < 8.7134] w=0.0732 to align # Constraint # added constraint: constraint((T0384)P182.CB, (T0384)L234.CB) [> 4.6674 = 7.7789 < 10.1126] w=0.0732 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)L234.CB) [> 3.0255 = 5.0425 < 6.5553] w=0.0732 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)C236.CB) [> 3.4158 = 5.6930 < 7.4009] w=0.0732 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)Y239.CB) [> 4.2237 = 7.0395 < 9.1513] w=0.0732 to align # Constraint # added constraint: constraint((T0384)L247.CB, (T0384)I257.CB) [> 3.9824 = 6.6373 < 8.6285] w=0.0732 to align # Constraint # added constraint: constraint((T0384)P235.CB, (T0384)I250.CB) [> 3.5213 = 5.8689 < 7.6296] w=0.0731 to align # Constraint # added constraint: constraint((T0384)T244.CB, (T0384)I257.CB) [> 4.1002 = 6.8337 < 8.8837] w=0.0731 to align # Constraint # added constraint: constraint((T0384)N122.CB, (T0384)W299.CB) [> 4.5581 = 7.5969 < 9.8759] w=0.0731 to align # Constraint # added constraint: constraint((T0384)A95.CB, (T0384)F117.CB) [> 3.6320 = 6.0533 < 7.8693] w=0.0729 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)P94.CB) [> 3.7169 = 6.1949 < 8.0534] w=0.0729 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)T298.CB) [> 3.5637 = 5.9395 < 7.7214] w=0.0728 to align # Constraint # added constraint: constraint((T0384)H88.CB, (T0384)I131.CB) [> 4.2096 = 7.0160 < 9.1208] w=0.0728 to align # Constraint # added constraint: constraint((T0384)R34.CB, (T0384)L55.CB) [> 4.0146 = 6.6910 < 8.6983] w=0.0727 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)A200.CB) [> 4.2608 = 7.1013 < 9.2317] w=0.0722 to align # Constraint # added constraint: constraint((T0384)F166.CB, (T0384)L175.CB) [> 3.9418 = 6.5697 < 8.5406] w=0.0720 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)Q297.CB) [> 4.1590 = 6.9317 < 9.0113] w=0.0712 to align # Constraint # added constraint: constraint((T0384)M176.CB, (T0384)E280.CB) [> 3.0685 = 5.1142 < 6.6485] w=0.0710 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)I131.CB) [> 3.6621 = 6.1034 < 7.9345] w=0.0709 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)Y296.CB) [> 4.3882 = 7.3137 < 9.5078] w=0.0709 to align # Constraint # added constraint: constraint((T0384)V165.CB, (T0384)L175.CB) [> 3.1853 = 5.3089 < 6.9015] w=0.0709 to align # Constraint # added constraint: constraint((T0384)D208.CB, (T0384)I230.CB) [> 3.5855 = 5.9759 < 7.7687] w=0.0704 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)A185.CB) [> 4.5540 = 7.5901 < 9.8671] w=0.0700 to align # Constraint # added constraint: constraint((T0384)G8.CA, (T0384)L74.CB) [> 4.3965 = 7.3274 < 9.5257] w=0.0694 to align # Constraint # added constraint: constraint((T0384)G211.CA, (T0384)L268.CB) [> 4.0237 = 6.7061 < 8.7179] w=0.0684 to align # Constraint # added constraint: constraint((T0384)V96.CB, (T0384)E118.CB) [> 3.4287 = 5.7145 < 7.4288] w=0.0681 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)I207.CB) [> 3.6442 = 6.0736 < 7.8957] w=0.0680 to align # Constraint # added constraint: constraint((T0384)K93.CB, (T0384)A303.CB) [> 4.2508 = 7.0846 < 9.2100] w=0.0675 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)D208.CB) [> 3.7597 = 6.2662 < 8.1460] w=0.0659 to align # Constraint # added constraint: constraint((T0384)L245.CB, (T0384)T259.CB) [> 4.1884 = 6.9808 < 9.0750] w=0.0659 to align # Constraint # added constraint: constraint((T0384)V96.CB, (T0384)A171.CB) [> 4.4025 = 7.3376 < 9.5388] w=0.0659 to align # Constraint # added constraint: constraint((T0384)T246.CB, (T0384)I257.CB) [> 4.1491 = 6.9152 < 8.9897] w=0.0659 to align # Constraint # added constraint: constraint((T0384)G243.CA, (T0384)I257.CB) [> 3.9190 = 6.5316 < 8.4911] w=0.0659 to align # Constraint # added constraint: constraint((T0384)T197.CB, (T0384)E322.CB) [> 3.4003 = 5.6671 < 7.3672] w=0.0659 to align # Constraint # added constraint: constraint((T0384)D195.CB, (T0384)E322.CB) [> 3.6657 = 6.1095 < 7.9423] w=0.0659 to align # Constraint # added constraint: constraint((T0384)A185.CB, (T0384)I250.CB) [> 3.9664 = 6.6106 < 8.5938] w=0.0659 to align # Constraint # added constraint: constraint((T0384)Y181.CB, (T0384)I250.CB) [> 4.4556 = 7.4261 < 9.6539] w=0.0659 to align # Constraint # added constraint: constraint((T0384)A109.CB, (T0384)L300.CB) [> 3.7303 = 6.2172 < 8.0824] w=0.0659 to align # Constraint # added constraint: constraint((T0384)A200.CB, (T0384)G213.CA) [> 3.8836 = 6.4726 < 8.4144] w=0.0657 to align # Constraint # added constraint: constraint((T0384)M176.CB, (T0384)R314.CB) [> 4.0264 = 6.7106 < 8.7238] w=0.0656 to align # Constraint # added constraint: constraint((T0384)M176.CB, (T0384)Y198.CB) [> 4.1552 = 6.9254 < 9.0030] w=0.0656 to align # Constraint # added constraint: constraint((T0384)I17.CB, (T0384)Y67.CB) [> 4.1203 = 6.8672 < 8.9274] w=0.0653 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)G191.CA) [> 4.3729 = 7.2882 < 9.4746] w=0.0653 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)L300.CB) [> 4.0112 = 6.6854 < 8.6910] w=0.0653 to align # Constraint # added constraint: constraint((T0384)A30.CB, (T0384)V66.CB) [> 4.4325 = 7.3875 < 9.6037] w=0.0651 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)I207.CB) [> 3.4322 = 5.7203 < 7.4364] w=0.0651 to align # Constraint # added constraint: constraint((T0384)G179.CA, (T0384)A200.CB) [> 3.4468 = 5.7447 < 7.4682] w=0.0650 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)Y198.CB) [> 4.3841 = 7.3068 < 9.4988] w=0.0650 to align # Constraint # added constraint: constraint((T0384)A159.CB, (T0384)R169.CB) [> 3.8385 = 6.3975 < 8.3168] w=0.0649 to align # Constraint # added constraint: constraint((T0384)G160.CA, (T0384)F170.CB) [> 3.5265 = 5.8774 < 7.6407] w=0.0649 to align # Constraint # added constraint: constraint((T0384)L175.CB, (T0384)L203.CB) [> 4.6676 = 7.7793 < 10.1131] w=0.0647 to align # Constraint # added constraint: constraint((T0384)G179.CA, (T0384)Y198.CB) [> 4.2152 = 7.0254 < 9.1330] w=0.0645 to align # Constraint # added constraint: constraint((T0384)D208.CB, (T0384)P269.CB) [> 3.9586 = 6.5976 < 8.5769] w=0.0643 to align # Constraint # added constraint: constraint((T0384)G8.CA, (T0384)Y67.CB) [> 4.5178 = 7.5297 < 9.7886] w=0.0639 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)Q297.CB) [> 3.7591 = 6.2652 < 8.1447] w=0.0626 to align # Constraint # added constraint: constraint((T0384)G160.CA, (T0384)G173.CA) [> 2.9710 = 4.9517 < 6.4373] w=0.0619 to align # Constraint # added constraint: constraint((T0384)L215.CB, (T0384)K225.CB) [> 3.8340 = 6.3900 < 8.3070] w=0.0617 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)V266.CB) [> 4.0789 = 6.7982 < 8.8376] w=0.0614 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)D302.CB) [> 4.2943 = 7.1571 < 9.3042] w=0.0601 to align # Constraint # added constraint: constraint((T0384)V96.CB, (T0384)A119.CB) [> 3.4265 = 5.7108 < 7.4241] w=0.0601 to align # Constraint # added constraint: constraint((T0384)D208.CB, (T0384)T231.CB) [> 3.8594 = 6.4323 < 8.3620] w=0.0597 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)D208.CB) [> 4.1347 = 6.8912 < 8.9586] w=0.0595 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)N146.CB) [> 4.3090 = 7.1816 < 9.3361] w=0.0593 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)G179.CA) [> 3.6552 = 6.0920 < 7.9196] w=0.0585 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)A185.CB) [> 3.5139 = 5.8565 < 7.6134] w=0.0585 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)H223.CB) [> 2.9850 = 4.9750 < 6.4675] w=0.0585 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)Q221.CB) [> 3.0055 = 5.0092 < 6.5119] w=0.0585 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)I224.CB) [> 4.5086 = 7.5143 < 9.7686] w=0.0585 to align # Constraint # added constraint: constraint((T0384)V140.CB, (T0384)L245.CB) [> 4.0555 = 6.7592 < 8.7869] w=0.0585 to align # Constraint # added constraint: constraint((T0384)V140.CB, (T0384)G243.CA) [> 3.6759 = 6.1265 < 7.9644] w=0.0585 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)I238.CB) [> 4.5816 = 7.6361 < 9.9269] w=0.0585 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)Y296.CB) [> 2.7862 = 4.6436 < 6.0367] w=0.0585 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)Y296.CB) [> 4.4635 = 7.4392 < 9.6709] w=0.0585 to align # Constraint # added constraint: constraint((T0384)H199.CB, (T0384)A317.CB) [> 3.5268 = 5.8781 < 7.6415] w=0.0585 to align # Constraint # added constraint: constraint((T0384)T197.CB, (T0384)F321.CB) [> 3.7750 = 6.2917 < 8.1793] w=0.0585 to align # Constraint # added constraint: constraint((T0384)L178.CB, (T0384)K228.CB) [> 4.4895 = 7.4825 < 9.7272] w=0.0585 to align # Constraint # added constraint: constraint((T0384)D177.CB, (T0384)A226.CB) [> 4.6223 = 7.7038 < 10.0150] w=0.0585 to align # Constraint # added constraint: constraint((T0384)D168.CB, (T0384)I207.CB) [> 3.4804 = 5.8006 < 7.5408] w=0.0585 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)K225.CB) [> 4.5154 = 7.5256 < 9.7833] w=0.0585 to align # Constraint # added constraint: constraint((T0384)A11.CB, (T0384)L157.CB) [> 4.4391 = 7.3984 < 9.6179] w=0.0585 to align # Constraint # added constraint: constraint((T0384)L245.CB, (T0384)R254.CB) [> 3.8274 = 6.3790 < 8.2928] w=0.0585 to align # Constraint # added constraint: constraint((T0384)A11.CB, (T0384)L158.CB) [> 3.5757 = 5.9595 < 7.7473] w=0.0585 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)L178.CB) [> 3.6851 = 6.1418 < 7.9843] w=0.0585 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)A200.CB) [> 4.3679 = 7.2798 < 9.4637] w=0.0584 to align # Constraint # added constraint: constraint((T0384)K93.CB, (T0384)F117.CB) [> 4.2339 = 7.0565 < 9.1734] w=0.0584 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)F117.CB) [> 3.5573 = 5.9289 < 7.7076] w=0.0584 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)A119.CB) [> 3.4049 = 5.6747 < 7.3772] w=0.0583 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)I131.CB) [> 3.4143 = 5.6905 < 7.3977] w=0.0582 to align # Constraint # added constraint: constraint((T0384)H88.CB, (T0384)A127.CB) [> 3.3782 = 5.6304 < 7.3195] w=0.0582 to align # Constraint # added constraint: constraint((T0384)I12.CB, (T0384)E125.CB) [> 3.6515 = 6.0859 < 7.9116] w=0.0582 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)I207.CB) [> 3.7681 = 6.2801 < 8.1641] w=0.0582 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)D177.CB) [> 3.8908 = 6.4847 < 8.4301] w=0.0580 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)D208.CB) [> 4.3114 = 7.1857 < 9.3414] w=0.0579 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)L175.CB) [> 3.4284 = 5.7140 < 7.4282] w=0.0579 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)L175.CB) [> 4.2510 = 7.0850 < 9.2105] w=0.0579 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)L175.CB) [> 4.0897 = 6.8162 < 8.8611] w=0.0579 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)D177.CB) [> 3.2586 = 5.4309 < 7.0602] w=0.0579 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)Y198.CB) [> 3.8499 = 6.4164 < 8.3413] w=0.0577 to align # Constraint # added constraint: constraint((T0384)D208.CB, (T0384)Q267.CB) [> 4.3783 = 7.2972 < 9.4863] w=0.0577 to align # Constraint # added constraint: constraint((T0384)A200.CB, (T0384)I270.CB) [> 4.0667 = 6.7779 < 8.8113] w=0.0577 to align # Constraint # added constraint: constraint((T0384)Q201.CB, (T0384)I270.CB) [> 3.5127 = 5.8544 < 7.6107] w=0.0577 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)A196.CB) [> 4.1856 = 6.9760 < 9.0688] w=0.0576 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)A196.CB) [> 4.6527 = 7.7545 < 10.0809] w=0.0573 to align # Constraint # added constraint: constraint((T0384)Y198.CB, (T0384)L215.CB) [> 3.7302 = 6.2171 < 8.0822] w=0.0572 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)L175.CB) [> 3.9247 = 6.5411 < 8.5035] w=0.0572 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)L178.CB) [> 4.0057 = 6.6762 < 8.6791] w=0.0572 to align # Constraint # added constraint: constraint((T0384)D208.CB, (T0384)V266.CB) [> 3.4024 = 5.6706 < 7.3718] w=0.0571 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)G172.CA) [> 2.9976 = 4.9961 < 6.4949] w=0.0570 to align # Constraint # added constraint: constraint((T0384)I180.CB, (T0384)G304.CA) [> 4.1830 = 6.9716 < 9.0631] w=0.0570 to align # Constraint # added constraint: constraint((T0384)I180.CB, (T0384)L209.CB) [> 3.8451 = 6.4085 < 8.3310] w=0.0568 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)I180.CB) [> 4.4107 = 7.3512 < 9.5565] w=0.0566 to align # Constraint # added constraint: constraint((T0384)F103.CB, (T0384)R188.CB) [> 4.3870 = 7.3117 < 9.5052] w=0.0566 to align # Constraint # added constraint: constraint((T0384)A95.CB, (T0384)L178.CB) [> 3.7859 = 6.3099 < 8.2029] w=0.0553 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)N210.CB) [> 3.5042 = 5.8403 < 7.5924] w=0.0549 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)G211.CA) [> 3.8182 = 6.3637 < 8.2728] w=0.0549 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)L141.CB) [> 3.6291 = 6.0484 < 7.8630] w=0.0540 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)L141.CB) [> 3.4616 = 5.7693 < 7.5001] w=0.0539 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)T298.CB) [> 4.2449 = 7.0749 < 9.1973] w=0.0528 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)G179.CA) [> 4.3787 = 7.2979 < 9.4872] w=0.0526 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)T298.CB) [> 3.7408 = 6.2347 < 8.1052] w=0.0524 to align # Constraint # added constraint: constraint((T0384)N122.CB, (T0384)T298.CB) [> 3.1562 = 5.2603 < 6.8383] w=0.0524 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)N210.CB) [> 4.0558 = 6.7597 < 8.7876] w=0.0522 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)L209.CB) [> 4.2194 = 7.0324 < 9.1421] w=0.0522 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)G211.CA) [> 3.8829 = 6.4715 < 8.4129] w=0.0522 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)G211.CA) [> 4.2459 = 7.0765 < 9.1995] w=0.0522 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)G213.CA) [> 3.9211 = 6.5351 < 8.4957] w=0.0522 to align # Constraint # added constraint: constraint((T0384)A143.CB, (T0384)G213.CA) [> 4.1314 = 6.8856 < 8.9513] w=0.0522 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)N210.CB) [> 2.8840 = 4.8067 < 6.2487] w=0.0522 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)A174.CB) [> 4.0849 = 6.8081 < 8.8505] w=0.0517 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)K149.CB) [> 3.8374 = 6.3957 < 8.3144] w=0.0514 to align # Constraint # added constraint: constraint((T0384)I180.CB, (T0384)G211.CA) [> 4.1723 = 6.9539 < 9.0401] w=0.0513 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)I270.CB) [> 3.4811 = 5.8018 < 7.5423] w=0.0512 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)Q221.CB) [> 4.3368 = 7.2279 < 9.3963] w=0.0512 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)V222.CB) [> 4.4114 = 7.3524 < 9.5581] w=0.0512 to align # Constraint # added constraint: constraint((T0384)A256.CB, (T0384)V266.CB) [> 4.4096 = 7.3494 < 9.5542] w=0.0512 to align # Constraint # added constraint: constraint((T0384)G172.CA, (T0384)R314.CB) [> 4.3757 = 7.2928 < 9.4807] w=0.0512 to align # Constraint # added constraint: constraint((T0384)L141.CB, (T0384)Y239.CB) [> 4.3622 = 7.2703 < 9.4514] w=0.0512 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)C236.CB) [> 4.5301 = 7.5501 < 9.8152] w=0.0512 to align # Constraint # added constraint: constraint((T0384)M176.CB, (T0384)E308.CB) [> 3.6658 = 6.1096 < 7.9425] w=0.0512 to align # Constraint # added constraint: constraint((T0384)Q27.CB, (T0384)N48.CB) [> 3.4602 = 5.7670 < 7.4971] w=0.0512 to align # Constraint # added constraint: constraint((T0384)C236.CB, (T0384)E251.CB) [> 4.6364 = 7.7273 < 10.0455] w=0.0512 to align # Constraint # added constraint: constraint((T0384)Y123.CB, (T0384)Y301.CB) [> 4.1483 = 6.9138 < 8.9879] w=0.0511 to align # Constraint # added constraint: constraint((T0384)S33.CB, (T0384)A43.CB) [> 4.2482 = 7.0803 < 9.2044] w=0.0511 to align # Constraint # added constraint: constraint((T0384)L245.CB, (T0384)V266.CB) [> 4.1952 = 6.9920 < 9.0896] w=0.0510 to align # Constraint # added constraint: constraint((T0384)C236.CB, (T0384)V266.CB) [> 4.5514 = 7.5856 < 9.8613] w=0.0510 to align # Constraint # added constraint: constraint((T0384)N248.CB, (T0384)I257.CB) [> 3.8992 = 6.4986 < 8.4482] w=0.0510 to align # Constraint # added constraint: constraint((T0384)L4.CB, (T0384)F134.CB) [> 4.3105 = 7.1842 < 9.3394] w=0.0509 to align # Constraint # added constraint: constraint((T0384)A69.CB, (T0384)P94.CB) [> 3.4795 = 5.7992 < 7.5389] w=0.0509 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)Y150.CB) [> 4.2534 = 7.0891 < 9.2158] w=0.0509 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)L135.CB) [> 3.8176 = 6.3627 < 8.2715] w=0.0509 to align # Constraint # added constraint: constraint((T0384)D208.CB, (T0384)L268.CB) [> 3.3212 = 5.5353 < 7.1960] w=0.0508 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)D144.CB) [> 4.3792 = 7.2987 < 9.4883] w=0.0507 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)Y147.CB) [> 3.6895 = 6.1491 < 7.9938] w=0.0507 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)W299.CB) [> 3.4082 = 5.6803 < 7.3844] w=0.0507 to align # Constraint # added constraint: constraint((T0384)L158.CB, (T0384)D168.CB) [> 3.4758 = 5.7929 < 7.5308] w=0.0506 to align # Constraint # added constraint: constraint((T0384)G8.CA, (T0384)A30.CB) [> 4.4167 = 7.3612 < 9.5695] w=0.0505 to align # Constraint # added constraint: constraint((T0384)T9.CB, (T0384)A30.CB) [> 2.6039 = 4.3398 < 5.6418] w=0.0505 to align # Constraint # added constraint: constraint((T0384)I17.CB, (T0384)A30.CB) [> 3.5905 = 5.9841 < 7.7794] w=0.0505 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)F117.CB) [> 4.0987 = 6.8311 < 8.8804] w=0.0505 to align # Constraint # added constraint: constraint((T0384)V66.CB, (T0384)I116.CB) [> 3.4430 = 5.7383 < 7.4598] w=0.0505 to align # Constraint # added constraint: constraint((T0384)V66.CB, (T0384)F117.CB) [> 4.1551 = 6.9252 < 9.0028] w=0.0505 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)F117.CB) [> 3.4714 = 5.7857 < 7.5214] w=0.0505 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)E118.CB) [> 3.5415 = 5.9025 < 7.6732] w=0.0505 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)A119.CB) [> 3.7105 = 6.1841 < 8.0393] w=0.0505 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)A200.CB) [> 3.5631 = 5.9384 < 7.7200] w=0.0503 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)Y198.CB) [> 4.7103 = 7.8505 < 10.2056] w=0.0500 to align # Constraint # added constraint: constraint((T0384)G179.CA, (T0384)G211.CA) [> 4.3101 = 7.1835 < 9.3385] w=0.0499 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)L178.CB) [> 3.7110 = 6.1851 < 8.0406] w=0.0496 to align # Constraint # added constraint: constraint((T0384)V165.CB, (T0384)Q202.CB) [> 3.8271 = 6.3785 < 8.2920] w=0.0494 to align # Constraint # added constraint: constraint((T0384)K138.CB, (T0384)L215.CB) [> 4.0236 = 6.7059 < 8.7177] w=0.0493 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)L175.CB) [> 3.8800 = 6.4667 < 8.4068] w=0.0484 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)E118.CB) [> 4.0429 = 6.7382 < 8.7597] w=0.0477 to align # Constraint # added constraint: constraint((T0384)I207.CB, (T0384)T298.CB) [> 3.4814 = 5.8024 < 7.5431] w=0.0471 to align # Constraint # added constraint: constraint((T0384)L209.CB, (T0384)T298.CB) [> 2.9327 = 4.8879 < 6.3542] w=0.0471 to align # Constraint # added constraint: constraint((T0384)L141.CB, (T0384)L215.CB) [> 3.4642 = 5.7737 < 7.5058] w=0.0465 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)D177.CB) [> 3.7155 = 6.1926 < 8.0503] w=0.0455 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)T298.CB) [> 3.8380 = 6.3966 < 8.3156] w=0.0455 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)A127.CB) [> 3.6466 = 6.0777 < 7.9010] w=0.0454 to align # Constraint # added constraint: constraint((T0384)L209.CB, (T0384)T249.CB) [> 4.3942 = 7.3236 < 9.5207] w=0.0451 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)L209.CB) [> 4.2019 = 7.0032 < 9.1042] w=0.0449 to align # Constraint # added constraint: constraint((T0384)S167.CB, (T0384)A200.CB) [> 3.6744 = 6.1240 < 7.9612] w=0.0447 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)N146.CB) [> 4.5008 = 7.5014 < 9.7518] w=0.0444 to align # Constraint # added constraint: constraint((T0384)V66.CB, (T0384)F115.CB) [> 4.2479 = 7.0798 < 9.2037] w=0.0443 to align # Constraint # added constraint: constraint((T0384)D64.CB, (T0384)F115.CB) [> 3.9612 = 6.6020 < 8.5826] w=0.0443 to align # Constraint # added constraint: constraint((T0384)N210.CB, (T0384)I257.CB) [> 3.8253 = 6.3755 < 8.2881] w=0.0440 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)S255.CB) [> 3.7942 = 6.3236 < 8.2207] w=0.0439 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)I238.CB) [> 4.3206 = 7.2010 < 9.3613] w=0.0439 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)V222.CB) [> 4.1629 = 6.9381 < 9.0196] w=0.0439 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)Y220.CB) [> 3.8697 = 6.4495 < 8.3843] w=0.0439 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)I224.CB) [> 4.7028 = 7.8380 < 10.1894] w=0.0439 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)G172.CA) [> 4.3309 = 7.2182 < 9.3836] w=0.0439 to align # Constraint # added constraint: constraint((T0384)Y198.CB, (T0384)F321.CB) [> 3.7190 = 6.1983 < 8.0578] w=0.0439 to align # Constraint # added constraint: constraint((T0384)G213.CA, (T0384)A317.CB) [> 4.6399 = 7.7332 < 10.0532] w=0.0439 to align # Constraint # added constraint: constraint((T0384)E237.CB, (T0384)Q265.CB) [> 3.2620 = 5.4366 < 7.0676] w=0.0439 to align # Constraint # added constraint: constraint((T0384)T244.CB, (T0384)Q265.CB) [> 3.5960 = 5.9933 < 7.7913] w=0.0439 to align # Constraint # added constraint: constraint((T0384)T312.CB, (T0384)A323.CB) [> 2.7070 = 4.5116 < 5.8651] w=0.0439 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)T240.CB) [> 3.3195 = 5.5325 < 7.1923] w=0.0439 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)T240.CB) [> 3.9580 = 6.5967 < 8.5757] w=0.0439 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)I224.CB) [> 4.2215 = 7.0359 < 9.1467] w=0.0439 to align # Constraint # added constraint: constraint((T0384)D177.CB, (T0384)K228.CB) [> 4.7221 = 7.8701 < 10.2312] w=0.0439 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)L178.CB) [> 3.6728 = 6.1214 < 7.9578] w=0.0439 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)I238.CB) [> 4.6168 = 7.6946 < 10.0030] w=0.0439 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)L247.CB) [> 3.9198 = 6.5330 < 8.4929] w=0.0439 to align # Constraint # added constraint: constraint((T0384)D168.CB, (T0384)A200.CB) [> 4.0705 = 6.7842 < 8.8195] w=0.0438 to align # Constraint # added constraint: constraint((T0384)P71.CB, (T0384)A95.CB) [> 4.3412 = 7.2353 < 9.4059] w=0.0438 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)G179.CA) [> 4.2746 = 7.1244 < 9.2617] w=0.0438 to align # Constraint # added constraint: constraint((T0384)L141.CB, (T0384)Y220.CB) [> 3.5570 = 5.9284 < 7.7069] w=0.0438 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)F145.CB) [> 3.7389 = 6.2315 < 8.1009] w=0.0437 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)F134.CB) [> 4.4098 = 7.3497 < 9.5546] w=0.0436 to align # Constraint # added constraint: constraint((T0384)P99.CB, (T0384)F117.CB) [> 4.1029 = 6.8382 < 8.8896] w=0.0436 to align # Constraint # added constraint: constraint((T0384)Q161.CB, (T0384)G172.CA) [> 4.1666 = 6.9444 < 9.0277] w=0.0436 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)A148.CB) [> 4.1764 = 6.9607 < 9.0489] w=0.0436 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)F134.CB) [> 4.4325 = 7.3875 < 9.6038] w=0.0436 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)L135.CB) [> 4.1482 = 6.9137 < 8.9878] w=0.0436 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)I180.CB) [> 4.2140 = 7.0234 < 9.1305] w=0.0435 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)K149.CB) [> 3.6632 = 6.1053 < 7.9369] w=0.0434 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)I116.CB) [> 3.8803 = 6.4671 < 8.4073] w=0.0433 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)A148.CB) [> 3.5262 = 5.8770 < 7.6402] w=0.0433 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)Y147.CB) [> 4.1717 = 6.9528 < 9.0386] w=0.0433 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)A148.CB) [> 3.9444 = 6.5739 < 8.5461] w=0.0433 to align # Constraint # added constraint: constraint((T0384)Q201.CB, (T0384)P269.CB) [> 3.6637 = 6.1062 < 7.9381] w=0.0432 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)F117.CB) [> 4.2007 = 7.0012 < 9.1016] w=0.0432 to align # Constraint # added constraint: constraint((T0384)A69.CB, (T0384)A120.CB) [> 3.4265 = 5.7109 < 7.4241] w=0.0432 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)A120.CB) [> 3.8133 = 6.3554 < 8.2620] w=0.0432 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)Y198.CB) [> 3.3488 = 5.5813 < 7.2557] w=0.0431 to align # Constraint # added constraint: constraint((T0384)T9.CB, (T0384)L28.CB) [> 4.7008 = 7.8347 < 10.1852] w=0.0430 to align # Constraint # added constraint: constraint((T0384)L175.CB, (T0384)A200.CB) [> 4.3812 = 7.3021 < 9.4927] w=0.0423 to align # Constraint # added constraint: constraint((T0384)N210.CB, (T0384)T244.CB) [> 4.0590 = 6.7649 < 8.7944] w=0.0415 to align # Constraint # added constraint: constraint((T0384)D208.CB, (T0384)L247.CB) [> 3.9074 = 6.5123 < 8.4659] w=0.0413 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)L175.CB) [> 3.4565 = 5.7609 < 7.4892] w=0.0407 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)I224.CB) [> 4.0224 = 6.7041 < 8.7153] w=0.0396 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)I224.CB) [> 3.6706 = 6.1177 < 7.9529] w=0.0387 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)I116.CB) [> 4.0139 = 6.6897 < 8.6967] w=0.0381 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)Y301.CB) [> 3.8485 = 6.4142 < 8.3384] w=0.0378 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)D208.CB) [> 4.6480 = 7.7466 < 10.0706] w=0.0376 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)I207.CB) [> 3.3858 = 5.6430 < 7.3359] w=0.0376 to align # Constraint # added constraint: constraint((T0384)D156.CB, (T0384)V165.CB) [> 3.7174 = 6.1956 < 8.0543] w=0.0366 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)K225.CB) [> 4.5061 = 7.5101 < 9.7631] w=0.0366 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)P269.CB) [> 4.1736 = 6.9560 < 9.0428] w=0.0366 to align # Constraint # added constraint: constraint((T0384)S97.CB, (T0384)D177.CB) [> 3.6059 = 6.0098 < 7.8127] w=0.0366 to align # Constraint # added constraint: constraint((T0384)S255.CB, (T0384)V266.CB) [> 3.6727 = 6.1212 < 7.9575] w=0.0366 to align # Constraint # added constraint: constraint((T0384)Q161.CB, (T0384)D208.CB) [> 3.3744 = 5.6239 < 7.3111] w=0.0366 to align # Constraint # added constraint: constraint((T0384)N164.CB, (T0384)G173.CA) [> 3.9870 = 6.6451 < 8.6386] w=0.0366 to align # Constraint # added constraint: constraint((T0384)G172.CA, (T0384)T312.CB) [> 4.2847 = 7.1411 < 9.2835] w=0.0366 to align # Constraint # added constraint: constraint((T0384)A196.CB, (T0384)E324.CB) [> 4.4672 = 7.4453 < 9.6789] w=0.0366 to align # Constraint # added constraint: constraint((T0384)F170.CB, (T0384)I180.CB) [> 4.0605 = 6.7675 < 8.7977] w=0.0366 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)A120.CB) [> 4.4148 = 7.3579 < 9.5653] w=0.0365 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)A127.CB) [> 3.9416 = 6.5693 < 8.5401] w=0.0365 to align # Constraint # added constraint: constraint((T0384)F166.CB, (T0384)A200.CB) [> 4.0845 = 6.8075 < 8.8498] w=0.0365 to align # Constraint # added constraint: constraint((T0384)V165.CB, (T0384)Q201.CB) [> 3.7235 = 6.2059 < 8.0676] w=0.0365 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)G179.CA) [> 3.5288 = 5.8814 < 7.6458] w=0.0365 to align # Constraint # added constraint: constraint((T0384)I180.CB, (T0384)T197.CB) [> 3.9612 = 6.6019 < 8.5825] w=0.0365 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)L135.CB) [> 4.0357 = 6.7261 < 8.7439] w=0.0365 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)L91.CB) [> 4.7035 = 7.8392 < 10.1910] w=0.0364 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)F145.CB) [> 4.4159 = 7.3598 < 9.5677] w=0.0364 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)N146.CB) [> 3.9893 = 6.6488 < 8.6435] w=0.0364 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)L215.CB) [> 3.6973 = 6.1621 < 8.0108] w=0.0364 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)S151.CB) [> 3.9475 = 6.5791 < 8.5529] w=0.0363 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)Y147.CB) [> 3.1788 = 5.2980 < 6.8874] w=0.0363 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)N146.CB) [> 3.4778 = 5.7964 < 7.5353] w=0.0363 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)T197.CB) [> 4.1003 = 6.8338 < 8.8840] w=0.0363 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)S152.CB) [> 3.7286 = 6.2143 < 8.0786] w=0.0362 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)I180.CB) [> 3.5812 = 5.9687 < 7.7593] w=0.0360 to align # Constraint # added constraint: constraint((T0384)A69.CB, (T0384)V96.CB) [> 3.7089 = 6.1815 < 8.0359] w=0.0358 to align # Constraint # added constraint: constraint((T0384)G179.CA, (T0384)H199.CB) [> 4.0273 = 6.7122 < 8.7258] w=0.0356 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)G172.CA) [> 4.4393 = 7.3988 < 9.6185] w=0.0353 to align # Constraint # added constraint: constraint((T0384)T9.CB, (T0384)Y67.CB) [> 4.6973 = 7.8288 < 10.1775] w=0.0350 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)I131.CB) [> 4.0234 = 6.7057 < 8.7174] w=0.0344 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)L135.CB) [> 3.7575 = 6.2624 < 8.1412] w=0.0343 to align # Constraint # added constraint: constraint((T0384)F258.CB, (T0384)L268.CB) [> 3.6969 = 6.1616 < 8.0100] w=0.0338 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)Q297.CB) [> 4.5193 = 7.5321 < 9.7918] w=0.0335 to align # Constraint # added constraint: constraint((T0384)L36.CB, (T0384)Q54.CB) [> 3.0361 = 5.0602 < 6.5782] w=0.0334 to align # Constraint # added constraint: constraint((T0384)L28.CB, (T0384)L51.CB) [> 4.3643 = 7.2738 < 9.4560] w=0.0331 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)V266.CB) [> 3.8538 = 6.4230 < 8.3499] w=0.0322 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)A148.CB) [> 3.6415 = 6.0692 < 7.8899] w=0.0316 to align # Constraint # added constraint: constraint((T0384)H21.CB, (T0384)A43.CB) [> 3.8044 = 6.3407 < 8.2429] w=0.0315 to align # Constraint # added constraint: constraint((T0384)G179.CA, (T0384)G213.CA) [> 3.7438 = 6.2396 < 8.1115] w=0.0310 to align # Constraint # added constraint: constraint((T0384)V29.CB, (T0384)L65.CB) [> 4.6536 = 7.7561 < 10.0829] w=0.0307 to align # Constraint # added constraint: constraint((T0384)P71.CB, (T0384)A120.CB) [> 3.3098 = 5.5163 < 7.1712] w=0.0307 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)I207.CB) [> 3.0790 = 5.1316 < 6.6711] w=0.0303 to align # Constraint # added constraint: constraint((T0384)G213.CA, (T0384)A256.CB) [> 3.8290 = 6.3817 < 8.2962] w=0.0294 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)Y150.CB) [> 4.6018 = 7.6697 < 9.9706] w=0.0293 to align # Constraint # added constraint: constraint((T0384)A143.CB, (T0384)Y220.CB) [> 3.1250 = 5.2084 < 6.7709] w=0.0293 to align # Constraint # added constraint: constraint((T0384)N164.CB, (T0384)D177.CB) [> 3.3938 = 5.6563 < 7.3532] w=0.0293 to align # Constraint # added constraint: constraint((T0384)D208.CB, (T0384)A317.CB) [> 4.4068 = 7.3447 < 9.5481] w=0.0293 to align # Constraint # added constraint: constraint((T0384)L175.CB, (T0384)L209.CB) [> 4.0532 = 6.7554 < 8.7820] w=0.0293 to align # Constraint # added constraint: constraint((T0384)N194.CB, (T0384)A323.CB) [> 3.2464 = 5.4107 < 7.0339] w=0.0293 to align # Constraint # added constraint: constraint((T0384)Y198.CB, (T0384)R320.CB) [> 3.3755 = 5.6259 < 7.3136] w=0.0293 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)R188.CB) [> 4.4733 = 7.4556 < 9.6922] w=0.0293 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)A127.CB) [> 3.2412 = 5.4020 < 7.0226] w=0.0293 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)I131.CB) [> 4.5292 = 7.5487 < 9.8134] w=0.0293 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)Y239.CB) [> 4.2926 = 7.1543 < 9.3006] w=0.0293 to align # Constraint # added constraint: constraint((T0384)K93.CB, (T0384)I116.CB) [> 3.3597 = 5.5994 < 7.2793] w=0.0292 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)S152.CB) [> 3.4143 = 5.6904 < 7.3976] w=0.0292 to align # Constraint # added constraint: constraint((T0384)A200.CB, (T0384)P274.CB) [> 4.2350 = 7.0584 < 9.1759] w=0.0292 to align # Constraint # added constraint: constraint((T0384)A95.CB, (T0384)G179.CA) [> 3.4906 = 5.8177 < 7.5631] w=0.0292 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)F115.CB) [> 4.2904 = 7.1507 < 9.2959] w=0.0291 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)T162.CB) [> 3.8095 = 6.3491 < 8.2538] w=0.0291 to align # Constraint # added constraint: constraint((T0384)A171.CB, (T0384)R314.CB) [> 4.0966 = 6.8277 < 8.8760] w=0.0290 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)I180.CB) [> 3.5608 = 5.9347 < 7.7151] w=0.0290 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)K153.CB) [> 4.1470 = 6.9117 < 8.9852] w=0.0290 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)Y147.CB) [> 3.9843 = 6.6404 < 8.6325] w=0.0290 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)N146.CB) [> 3.6568 = 6.0947 < 7.9232] w=0.0290 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)A200.CB) [> 3.3544 = 5.5907 < 7.2678] w=0.0290 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)H199.CB) [> 3.2168 = 5.3614 < 6.9698] w=0.0289 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)A148.CB) [> 3.5032 = 5.8388 < 7.5904] w=0.0288 to align # Constraint # added constraint: constraint((T0384)A95.CB, (T0384)I180.CB) [> 4.0978 = 6.8297 < 8.8787] w=0.0287 to align # Constraint # added constraint: constraint((T0384)S23.CB, (T0384)V187.CB) [> 4.2067 = 7.0112 < 9.1145] w=0.0287 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)L209.CB) [> 4.3709 = 7.2848 < 9.4703] w=0.0286 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)A196.CB) [> 4.2461 = 7.0768 < 9.1999] w=0.0281 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)I131.CB) [> 2.6436 = 4.4060 < 5.7278] w=0.0279 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)L141.CB) [> 4.0898 = 6.8164 < 8.8613] w=0.0277 to align # Constraint # added constraint: constraint((T0384)L215.CB, (T0384)L268.CB) [> 4.2246 = 7.0410 < 9.1533] w=0.0274 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)L295.CB) [> 3.4586 = 5.7643 < 7.4936] w=0.0274 to align # Constraint # added constraint: constraint((T0384)H199.CB, (T0384)N210.CB) [> 4.0505 = 6.7509 < 8.7762] w=0.0271 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)I131.CB) [> 3.8778 = 6.4630 < 8.4019] w=0.0258 to align # Constraint # added constraint: constraint((T0384)E110.CB, (T0384)F134.CB) [> 4.1322 = 6.8870 < 8.9531] w=0.0254 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)H199.CB) [> 3.5083 = 5.8472 < 7.6014] w=0.0254 to align # Constraint # added constraint: constraint((T0384)I207.CB, (T0384)Q297.CB) [> 3.9821 = 6.6368 < 8.6279] w=0.0252 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)A256.CB) [> 3.3662 = 5.6103 < 7.2934] w=0.0249 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)V222.CB) [> 3.7901 = 6.3168 < 8.2118] w=0.0246 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)I116.CB) [> 4.7192 = 7.8654 < 10.2250] w=0.0237 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)G179.CA) [> 3.5761 = 5.9602 < 7.7482] w=0.0233 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)G304.CA) [> 4.6850 = 7.8083 < 10.1507] w=0.0228 to align # Constraint # added constraint: constraint((T0384)L175.CB, (T0384)G213.CA) [> 3.8715 = 6.4525 < 8.3883] w=0.0226 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)N164.CB) [> 4.2666 = 7.1110 < 9.2443] w=0.0220 to align # Constraint # added constraint: constraint((T0384)A196.CB, (T0384)F321.CB) [> 4.2036 = 7.0061 < 9.1079] w=0.0220 to align # Constraint # added constraint: constraint((T0384)H199.CB, (T0384)T312.CB) [> 4.2716 = 7.1192 < 9.2550] w=0.0220 to align # Constraint # added constraint: constraint((T0384)H199.CB, (T0384)F321.CB) [> 4.3919 = 7.3198 < 9.5158] w=0.0220 to align # Constraint # added constraint: constraint((T0384)H252.CB, (T0384)L268.CB) [> 4.6570 = 7.7616 < 10.0901] w=0.0220 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)K225.CB) [> 4.4584 = 7.4307 < 9.6599] w=0.0220 to align # Constraint # added constraint: constraint((T0384)G24.CA, (T0384)T316.CB) [> 4.1747 = 6.9578 < 9.0451] w=0.0220 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)G213.CA) [> 3.2097 = 5.3496 < 6.9544] w=0.0219 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)C236.CB) [> 3.7991 = 6.3318 < 8.2313] w=0.0219 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)G179.CA) [> 3.7985 = 6.3308 < 8.2301] w=0.0219 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)S152.CB) [> 4.5197 = 7.5328 < 9.7927] w=0.0219 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)S152.CB) [> 3.7063 = 6.1771 < 8.0303] w=0.0219 to align # Constraint # added constraint: constraint((T0384)Q27.CB, (T0384)S62.CB) [> 4.4497 = 7.4161 < 9.6410] w=0.0219 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)A143.CB) [> 3.5654 = 5.9424 < 7.7251] w=0.0219 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)H199.CB) [> 3.3072 = 5.5120 < 7.1656] w=0.0219 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)H199.CB) [> 4.0992 = 6.8319 < 8.8815] w=0.0219 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)Y150.CB) [> 3.0514 = 5.0857 < 6.6114] w=0.0218 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)K153.CB) [> 4.7442 = 7.9071 < 10.2792] w=0.0218 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)S152.CB) [> 3.5049 = 5.8415 < 7.5940] w=0.0218 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)T197.CB) [> 3.7711 = 6.2852 < 8.1707] w=0.0218 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)K149.CB) [> 4.2275 = 7.0458 < 9.1595] w=0.0218 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)A148.CB) [> 3.8946 = 6.4911 < 8.4384] w=0.0218 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)Y150.CB) [> 4.0667 = 6.7778 < 8.8112] w=0.0218 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)S151.CB) [> 3.7185 = 6.1975 < 8.0568] w=0.0218 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)D144.CB) [> 4.0958 = 6.8263 < 8.8742] w=0.0218 to align # Constraint # added constraint: constraint((T0384)A196.CB, (T0384)Y217.CB) [> 3.5577 = 5.9296 < 7.7084] w=0.0218 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)L141.CB) [> 3.6993 = 6.1656 < 8.0152] w=0.0218 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)L175.CB) [> 3.1189 = 5.1982 < 6.7577] w=0.0218 to align # Constraint # added constraint: constraint((T0384)L175.CB, (T0384)A196.CB) [> 3.5647 = 5.9412 < 7.7235] w=0.0217 to align # Constraint # added constraint: constraint((T0384)A143.CB, (T0384)T197.CB) [> 4.3431 = 7.2384 < 9.4099] w=0.0217 to align # Constraint # added constraint: constraint((T0384)L175.CB, (T0384)Y198.CB) [> 4.1562 = 6.9271 < 9.0052] w=0.0217 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)S151.CB) [> 3.2654 = 5.4423 < 7.0750] w=0.0217 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)K149.CB) [> 3.5814 = 5.9690 < 7.7597] w=0.0217 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)Y150.CB) [> 3.6346 = 6.0577 < 7.8750] w=0.0217 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)S151.CB) [> 3.7064 = 6.1773 < 8.0305] w=0.0217 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)F134.CB) [> 4.5622 = 7.6036 < 9.8847] w=0.0217 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)A127.CB) [> 4.1133 = 6.8555 < 8.9122] w=0.0217 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)K149.CB) [> 4.4738 = 7.4563 < 9.6932] w=0.0216 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)I180.CB) [> 3.4254 = 5.7090 < 7.4217] w=0.0216 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)Y150.CB) [> 4.2338 = 7.0563 < 9.1732] w=0.0216 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)A39.CB) [> 4.5765 = 7.6275 < 9.9157] w=0.0215 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)L141.CB) [> 4.0297 = 6.7162 < 8.7311] w=0.0215 to align # Constraint # added constraint: constraint((T0384)G10.CA, (T0384)I31.CB) [> 4.4219 = 7.3699 < 9.5808] w=0.0214 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)S151.CB) [> 4.0074 = 6.6789 < 8.6826] w=0.0213 to align # Constraint # added constraint: constraint((T0384)A136.CB, (T0384)Y217.CB) [> 4.3311 = 7.2185 < 9.3840] w=0.0211 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)L135.CB) [> 3.0634 = 5.1056 < 6.6373] w=0.0208 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)L175.CB) [> 4.0404 = 6.7340 < 8.7542] w=0.0208 to align # Constraint # added constraint: constraint((T0384)H199.CB, (T0384)L215.CB) [> 4.3896 = 7.3160 < 9.5108] w=0.0207 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)G179.CA) [> 2.8183 = 4.6971 < 6.1062] w=0.0204 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)A95.CB) [> 3.9472 = 6.5786 < 8.5522] w=0.0201 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)L295.CB) [> 3.9735 = 6.6226 < 8.6093] w=0.0200 to align # Constraint # added constraint: constraint((T0384)L141.CB, (T0384)V222.CB) [> 4.5963 = 7.6604 < 9.9585] w=0.0200 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)A127.CB) [> 4.5526 = 7.5877 < 9.8641] w=0.0186 to align # Constraint # added constraint: constraint((T0384)I180.CB, (T0384)I224.CB) [> 3.3313 = 5.5522 < 7.2178] w=0.0180 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)Y217.CB) [> 4.4725 = 7.4542 < 9.6904] w=0.0176 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)T162.CB) [> 3.8156 = 6.3594 < 8.2672] w=0.0174 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)T197.CB) [> 3.7715 = 6.2858 < 8.1716] w=0.0172 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)Y198.CB) [> 4.6716 = 7.7860 < 10.1217] w=0.0172 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)Y147.CB) [> 3.8173 = 6.3622 < 8.2709] w=0.0170 to align # Constraint # added constraint: constraint((T0384)L175.CB, (T0384)L215.CB) [> 3.6237 = 6.0395 < 7.8514] w=0.0164 to align # Constraint # added constraint: constraint((T0384)I180.CB, (T0384)G213.CA) [> 3.3793 = 5.6322 < 7.3219] w=0.0164 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)L175.CB) [> 3.1357 = 5.2262 < 6.7941] w=0.0160 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)Y147.CB) [> 3.7195 = 6.1991 < 8.0588] w=0.0154 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)I224.CB) [> 4.7225 = 7.8708 < 10.2321] w=0.0146 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)N146.CB) [> 4.5681 = 7.6135 < 9.8976] w=0.0146 to align # Constraint # added constraint: constraint((T0384)C236.CB, (T0384)I253.CB) [> 4.5479 = 7.5798 < 9.8537] w=0.0146 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)Y150.CB) [> 4.4435 = 7.4058 < 9.6276] w=0.0146 to align # Constraint # added constraint: constraint((T0384)Y150.CB, (T0384)L215.CB) [> 2.9742 = 4.9570 < 6.4441] w=0.0146 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)G213.CA) [> 4.0651 = 6.7752 < 8.8077] w=0.0146 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)A148.CB) [> 4.5512 = 7.5853 < 9.8608] w=0.0146 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)L175.CB) [> 3.3134 = 5.5223 < 7.1790] w=0.0146 to align # Constraint # added constraint: constraint((T0384)K93.CB, (T0384)L175.CB) [> 3.8442 = 6.4069 < 8.3290] w=0.0146 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)L175.CB) [> 2.7104 = 4.5173 < 5.8725] w=0.0146 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)L91.CB) [> 4.7701 = 7.9502 < 10.3352] w=0.0146 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)K93.CB) [> 4.6859 = 7.8099 < 10.1529] w=0.0146 to align # Constraint # added constraint: constraint((T0384)A69.CB, (T0384)E118.CB) [> 4.2800 = 7.1333 < 9.2732] w=0.0146 to align # Constraint # added constraint: constraint((T0384)L183.CB, (T0384)V222.CB) [> 3.4570 = 5.7617 < 7.4903] w=0.0146 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)H199.CB) [> 4.1040 = 6.8400 < 8.8919] w=0.0146 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)Y198.CB) [> 4.6689 = 7.7814 < 10.1159] w=0.0146 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)T197.CB) [> 4.3936 = 7.3227 < 9.5195] w=0.0146 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)A196.CB) [> 4.5197 = 7.5328 < 9.7927] w=0.0146 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)L141.CB) [> 4.7795 = 7.9658 < 10.3555] w=0.0146 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)S152.CB) [> 4.0698 = 6.7830 < 8.8180] w=0.0146 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)I180.CB) [> 3.5810 = 5.9683 < 7.7588] w=0.0146 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)I180.CB) [> 3.8886 = 6.4810 < 8.4253] w=0.0146 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)I180.CB) [> 2.7000 = 4.5000 < 5.8500] w=0.0146 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)A143.CB) [> 3.1654 = 5.2756 < 6.8583] w=0.0146 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)I131.CB) [> 3.8089 = 6.3481 < 8.2526] w=0.0146 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)T197.CB) [> 4.7469 = 7.9115 < 10.2849] w=0.0146 to align # Constraint # added constraint: constraint((T0384)H88.CB, (T0384)A119.CB) [> 3.7951 = 6.3252 < 8.2228] w=0.0146 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)L135.CB) [> 3.8807 = 6.4678 < 8.4081] w=0.0146 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)P94.CB) [> 3.4044 = 5.6741 < 7.3763] w=0.0146 to align # Constraint # added constraint: constraint((T0384)H88.CB, (T0384)F134.CB) [> 4.0301 = 6.7169 < 8.7320] w=0.0146 to align # Constraint # added constraint: constraint((T0384)H88.CB, (T0384)L135.CB) [> 3.3834 = 5.6390 < 7.3306] w=0.0146 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)L141.CB) [> 4.7533 = 7.9221 < 10.2987] w=0.0146 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)I131.CB) [> 2.9181 = 4.8635 < 6.3226] w=0.0146 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)L141.CB) [> 4.6067 = 7.6779 < 9.9812] w=0.0146 to align # Constraint # added constraint: constraint((T0384)I90.CB, (T0384)L175.CB) [> 3.0193 = 5.0321 < 6.5417] w=0.0146 to align # Constraint # added constraint: constraint((T0384)L91.CB, (T0384)L175.CB) [> 4.2699 = 7.1164 < 9.2514] w=0.0146 to align # Constraint # added constraint: constraint((T0384)I180.CB, (T0384)A196.CB) [> 3.8711 = 6.4518 < 8.3874] w=0.0146 to align # Constraint # added constraint: constraint((T0384)A95.CB, (T0384)L175.CB) [> 3.3861 = 5.6434 < 7.3365] w=0.0145 to align # Constraint # added constraint: constraint((T0384)A95.CB, (T0384)C114.CB) [> 4.0666 = 6.7777 < 8.8110] w=0.0145 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)H199.CB) [> 4.1902 = 6.9836 < 9.0787] w=0.0145 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)Y198.CB) [> 4.6681 = 7.7802 < 10.1142] w=0.0145 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)F145.CB) [> 3.5827 = 5.9712 < 7.7625] w=0.0145 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)A143.CB) [> 3.6478 = 6.0797 < 7.9036] w=0.0145 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)D144.CB) [> 3.9105 = 6.5175 < 8.4727] w=0.0145 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)A143.CB) [> 3.5909 = 5.9849 < 7.7804] w=0.0145 to align # Constraint # added constraint: constraint((T0384)C114.CB, (T0384)K149.CB) [> 4.0543 = 6.7572 < 8.7843] w=0.0145 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)K149.CB) [> 3.6342 = 6.0570 < 7.8741] w=0.0145 to align # Constraint # added constraint: constraint((T0384)T197.CB, (T0384)Y217.CB) [> 3.9711 = 6.6185 < 8.6040] w=0.0144 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)L135.CB) [> 4.2113 = 7.0189 < 9.1246] w=0.0144 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)S152.CB) [> 4.4162 = 7.3603 < 9.5684] w=0.0144 to align # Constraint # added constraint: constraint((T0384)L175.CB, (T0384)T197.CB) [> 4.0350 = 6.7249 < 8.7424] w=0.0144 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)A148.CB) [> 4.2631 = 7.1052 < 9.2367] w=0.0144 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)L141.CB) [> 3.5176 = 5.8626 < 7.6214] w=0.0144 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)L175.CB) [> 3.9696 = 6.6160 < 8.6007] w=0.0144 to align # Constraint # added constraint: constraint((T0384)V66.CB, (T0384)L175.CB) [> 4.1762 = 6.9604 < 9.0485] w=0.0144 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)L175.CB) [> 2.9850 = 4.9750 < 6.4675] w=0.0144 to align # Constraint # added constraint: constraint((T0384)I68.CB, (T0384)L175.CB) [> 4.1778 = 6.9630 < 9.0518] w=0.0144 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)Y147.CB) [> 4.4365 = 7.3942 < 9.6124] w=0.0143 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)Y147.CB) [> 3.4551 = 5.7585 < 7.4861] w=0.0143 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)K149.CB) [> 2.4140 = 4.0233 < 5.2303] w=0.0143 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)H199.CB) [> 4.4708 = 7.4513 < 9.6867] w=0.0143 to align # Constraint # added constraint: constraint((T0384)N146.CB, (T0384)N210.CB) [> 4.7772 = 7.9620 < 10.3506] w=0.0143 to align # Constraint # added constraint: constraint((T0384)K153.CB, (T0384)I180.CB) [> 4.3993 = 7.3322 < 9.5319] w=0.0143 to align # Constraint # added constraint: constraint((T0384)L28.CB, (T0384)A39.CB) [> 4.5698 = 7.6163 < 9.9012] w=0.0143 to align # Constraint # added constraint: constraint((T0384)Y217.CB, (T0384)N233.CB) [> 3.7697 = 6.2828 < 8.1676] w=0.0139 to align # Constraint # added constraint: constraint((T0384)L215.CB, (T0384)C236.CB) [> 4.1542 = 6.9236 < 9.0007] w=0.0139 to align # Constraint # added constraint: constraint((T0384)G213.CA, (T0384)C236.CB) [> 3.1940 = 5.3233 < 6.9203] w=0.0139 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)L175.CB) [> 3.9403 = 6.5672 < 8.5374] w=0.0138 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)I180.CB) [> 4.7844 = 7.9740 < 10.3663] w=0.0135 to align # Constraint # added constraint: constraint((T0384)L215.CB, (T0384)I253.CB) [> 3.8073 = 6.3455 < 8.2492] w=0.0131 to align # Constraint # added constraint: constraint((T0384)Y147.CB, (T0384)G179.CA) [> 3.3250 = 5.5417 < 7.2042] w=0.0131 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)G179.CA) [> 3.6453 = 6.0756 < 7.8982] w=0.0129 to align # Constraint # added constraint: constraint((T0384)L2.CB, (T0384)L28.CB) [> 4.0304 = 6.7173 < 8.7325] w=0.0124 to align # Constraint # added constraint: constraint((T0384)L65.CB, (T0384)E118.CB) [> 3.4438 = 5.7397 < 7.4616] w=0.0124 to align # Constraint # added constraint: constraint((T0384)V66.CB, (T0384)E118.CB) [> 4.1676 = 6.9460 < 9.0298] w=0.0124 to align # Constraint # added constraint: constraint((T0384)Y67.CB, (T0384)A120.CB) [> 3.8230 = 6.3717 < 8.2832] w=0.0124 to align # Constraint # added constraint: constraint((T0384)A200.CB, (T0384)I224.CB) [> 4.6384 = 7.7306 < 10.0498] w=0.0107 to align # Constraint # added constraint: constraint((T0384)K228.CB, (T0384)I253.CB) [> 3.3769 = 5.6282 < 7.3167] w=0.0102 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)K225.CB) [> 3.5623 = 5.9371 < 7.7183] w=0.0102 to align # Constraint # added constraint: constraint((T0384)G179.CA, (T0384)T197.CB) [> 3.7375 = 6.2292 < 8.0980] w=0.0102 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)L175.CB) [> 3.7453 = 6.2422 < 8.1148] w=0.0101 to align # Constraint # added constraint: constraint((T0384)L175.CB, (T0384)I253.CB) [> 4.2253 = 7.0422 < 9.1548] w=0.0101 to align # Constraint # added constraint: constraint((T0384)H199.CB, (T0384)D208.CB) [> 4.6753 = 7.7921 < 10.1298] w=0.0091 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)L209.CB) [> 4.5672 = 7.6120 < 9.8955] w=0.0090 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)G179.CA) [> 4.7289 = 7.8814 < 10.2459] w=0.0087 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)H252.CB) [> 4.4290 = 7.3816 < 9.5961] w=0.0073 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)G211.CA) [> 4.6773 = 7.7955 < 10.1341] w=0.0073 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)G213.CA) [> 4.1150 = 6.8584 < 8.9159] w=0.0073 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)I207.CB) [> 4.7282 = 7.8803 < 10.2444] w=0.0073 to align # Constraint # added constraint: constraint((T0384)N210.CB, (T0384)I224.CB) [> 3.7051 = 6.1751 < 8.0276] w=0.0073 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)A119.CB) [> 4.6653 = 7.7756 < 10.1082] w=0.0073 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)F145.CB) [> 3.8347 = 6.3912 < 8.3086] w=0.0073 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)C236.CB) [> 4.1533 = 6.9222 < 8.9988] w=0.0073 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)C236.CB) [> 3.0508 = 5.0847 < 6.6102] w=0.0073 to align # Constraint # added constraint: constraint((T0384)K93.CB, (T0384)F145.CB) [> 4.6056 = 7.6760 < 9.9788] w=0.0073 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)Y150.CB) [> 2.6685 = 4.4475 < 5.7818] w=0.0073 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)S151.CB) [> 4.5250 = 7.5417 < 9.8042] w=0.0073 to align # Constraint # added constraint: constraint((T0384)L91.CB, (T0384)F134.CB) [> 4.6908 = 7.8179 < 10.1633] w=0.0073 to align # Constraint # added constraint: constraint((T0384)L91.CB, (T0384)I131.CB) [> 3.7585 = 6.2642 < 8.1434] w=0.0073 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)A200.CB) [> 3.7760 = 6.2933 < 8.1813] w=0.0073 to align # Constraint # added constraint: constraint((T0384)I180.CB, (T0384)C236.CB) [> 4.7702 = 7.9504 < 10.3355] w=0.0073 to align # Constraint # added constraint: constraint((T0384)G10.CA, (T0384)S152.CB) [> 4.6222 = 7.7036 < 10.0147] w=0.0073 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)A200.CB) [> 4.7093 = 7.8489 < 10.2035] w=0.0073 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)G179.CA) [> 4.7624 = 7.9373 < 10.3185] w=0.0073 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)G179.CA) [> 3.9144 = 6.5240 < 8.4812] w=0.0073 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)G179.CA) [> 2.8210 = 4.7017 < 6.1122] w=0.0073 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)G179.CA) [> 4.7126 = 7.8543 < 10.2106] w=0.0073 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)H199.CB) [> 4.1476 = 6.9127 < 8.9866] w=0.0073 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)T197.CB) [> 2.8564 = 4.7607 < 6.1890] w=0.0073 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)A196.CB) [> 4.3964 = 7.3273 < 9.5255] w=0.0073 to align # Constraint # added constraint: constraint((T0384)A119.CB, (T0384)A196.CB) [> 2.6885 = 4.4809 < 5.8252] w=0.0073 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)T197.CB) [> 3.5904 = 5.9840 < 7.7792] w=0.0073 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)A196.CB) [> 4.2944 = 7.1573 < 9.3045] w=0.0073 to align # Constraint # added constraint: constraint((T0384)V6.CB, (T0384)F52.CB) [> 4.4026 = 7.3376 < 9.5389] w=0.0073 to align # Constraint # added constraint: constraint((T0384)T9.CB, (T0384)L36.CB) [> 3.9123 = 6.5206 < 8.4768] w=0.0073 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)A196.CB) [> 4.6498 = 7.7496 < 10.0745] w=0.0073 to align # Constraint # added constraint: constraint((T0384)S151.CB, (T0384)T197.CB) [> 2.5770 = 4.2950 < 5.5835] w=0.0073 to align # Constraint # added constraint: constraint((T0384)S152.CB, (T0384)T197.CB) [> 4.3512 = 7.2520 < 9.4276] w=0.0073 to align # Constraint # added constraint: constraint((T0384)A30.CB, (T0384)A39.CB) [> 3.5244 = 5.8740 < 7.6362] w=0.0073 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)D144.CB) [> 4.4881 = 7.4802 < 9.7243] w=0.0073 to align # Constraint # added constraint: constraint((T0384)G10.CA, (T0384)L141.CB) [> 4.5621 = 7.6035 < 9.8845] w=0.0073 to align # Constraint # added constraint: constraint((T0384)T9.CB, (T0384)A143.CB) [> 4.5403 = 7.5671 < 9.8372] w=0.0073 to align # Constraint # added constraint: constraint((T0384)T9.CB, (T0384)L141.CB) [> 3.8118 = 6.3530 < 8.2589] w=0.0073 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)I180.CB) [> 2.7885 = 4.6475 < 6.0418] w=0.0073 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)G179.CA) [> 3.3553 = 5.5922 < 7.2699] w=0.0073 to align # Constraint # added constraint: constraint((T0384)L175.CB, (T0384)H199.CB) [> 2.1364 = 3.5607 < 4.6289] w=0.0073 to align # Constraint # added constraint: constraint((T0384)H88.CB, (T0384)L175.CB) [> 4.6607 = 7.7679 < 10.0983] w=0.0073 to align # Constraint # added constraint: constraint((T0384)H88.CB, (T0384)L141.CB) [> 4.6680 = 7.7800 < 10.1140] w=0.0073 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)A120.CB) [> 3.6930 = 6.1550 < 8.0015] w=0.0073 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)L135.CB) [> 3.0241 = 5.0402 < 6.5522] w=0.0073 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)L175.CB) [> 3.7273 = 6.2122 < 8.0758] w=0.0073 to align # Constraint # added constraint: constraint((T0384)G179.CA, (T0384)A196.CB) [> 3.3742 = 5.6236 < 7.3107] w=0.0073 to align # Constraint # added constraint: constraint((T0384)L141.CB, (T0384)L175.CB) [> 3.2615 = 5.4358 < 7.0665] w=0.0073 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)C236.CB) [> 3.4058 = 5.6763 < 7.3792] w=0.0073 to align # Constraint # added constraint: constraint((T0384)A127.CB, (T0384)T197.CB) [> 4.5488 = 7.5814 < 9.8558] w=0.0072 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)K153.CB) [> 4.7858 = 7.9763 < 10.3692] w=0.0072 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)F145.CB) [> 4.6140 = 7.6899 < 9.9969] w=0.0072 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)N146.CB) [> 4.1781 = 6.9634 < 9.0525] w=0.0072 to align # Constraint # added constraint: constraint((T0384)A120.CB, (T0384)D144.CB) [> 2.3621 = 3.9369 < 5.1180] w=0.0072 to align # Constraint # added constraint: constraint((T0384)G10.CA, (T0384)H124.CB) [> 4.4938 = 7.4897 < 9.7366] w=0.0072 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)S151.CB) [> 4.4289 = 7.3815 < 9.5960] w=0.0072 to align # Constraint # added constraint: constraint((T0384)P94.CB, (T0384)S152.CB) [> 3.5297 = 5.8828 < 7.6476] w=0.0072 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)H199.CB) [> 2.9862 = 4.9771 < 6.4702] w=0.0072 to align # Constraint # added constraint: constraint((T0384)D144.CB, (T0384)A200.CB) [> 4.0932 = 6.8219 < 8.8685] w=0.0071 to align # Constraint # added constraint: constraint((T0384)F145.CB, (T0384)A200.CB) [> 4.0698 = 6.7830 < 8.8179] w=0.0071 to align # Constraint # added constraint: constraint((T0384)E118.CB, (T0384)A200.CB) [> 1.9707 = 3.2846 < 4.2699] w=0.0071 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)F145.CB) [> 4.6788 = 7.7981 < 10.1375] w=0.0071 to align # Constraint # added constraint: constraint((T0384)F115.CB, (T0384)N146.CB) [> 2.6924 = 4.4874 < 5.8336] w=0.0071 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)F145.CB) [> 3.4253 = 5.7088 < 7.4214] w=0.0071 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)N146.CB) [> 4.0415 = 6.7359 < 8.7567] w=0.0071 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)H199.CB) [> 3.2570 = 5.4283 < 7.0568] w=0.0071 to align # Constraint # added constraint: constraint((T0384)F117.CB, (T0384)A200.CB) [> 3.6440 = 6.0734 < 7.8954] w=0.0071 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)I131.CB) [> 3.9300 = 6.5499 < 8.5149] w=0.0071 to align # Constraint # added constraint: constraint((T0384)L91.CB, (T0384)A200.CB) [> 4.4017 = 7.3362 < 9.5370] w=0.0071 to align # Constraint # added constraint: constraint((T0384)V66.CB, (T0384)I131.CB) [> 4.1411 = 6.9019 < 8.9725] w=0.0071 to align # Constraint # added constraint: constraint((T0384)V66.CB, (T0384)L135.CB) [> 3.5697 = 5.9495 < 7.7343] w=0.0071 to align # Constraint # added constraint: constraint((T0384)N72.CB, (T0384)A127.CB) [> 3.0112 = 5.0186 < 6.5242] w=0.0071 to align # Constraint # added constraint: constraint((T0384)G211.CA, (T0384)C236.CB) [> 3.5432 = 5.9054 < 7.6770] w=0.0071 to align # Constraint # added constraint: constraint((T0384)Y217.CB, (T0384)C236.CB) [> 2.6477 = 4.4128 < 5.7367] w=0.0071 to align # Constraint # added constraint: constraint((T0384)L141.CB, (T0384)Y150.CB) [> 3.2537 = 5.4228 < 7.0496] w=0.0071 to align # Constraint # added constraint: constraint((T0384)A143.CB, (T0384)Y198.CB) [> 4.6850 = 7.8084 < 10.1509] w=0.0071 to align # Constraint # added constraint: constraint((T0384)Y198.CB, (T0384)Y217.CB) [> 4.5397 = 7.5661 < 9.8359] w=0.0071 to align # Constraint # added constraint: constraint((T0384)H199.CB, (T0384)Y217.CB) [> 3.1090 = 5.1817 < 6.7362] w=0.0071 to align # Constraint # added constraint: constraint((T0384)I116.CB, (T0384)F134.CB) [> 4.4609 = 7.4348 < 9.6652] w=0.0068 to align # Constraint # added constraint: constraint((T0384)I7.CB, (T0384)V29.CB) [> 4.7626 = 7.9376 < 10.3189] w=0.0068 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)C236.CB) [> 4.2381 = 7.0635 < 9.1826] w=0.0067 to align # Constraint # added constraint: constraint((T0384)Y198.CB, (T0384)N210.CB) [> 4.0716 = 6.7860 < 8.8218] w=0.0062 to align # Constraint # added constraint: constraint((T0384)I180.CB, (T0384)N210.CB) [> 3.6560 = 6.0933 < 7.9214] w=0.0062 to align # Constraint # added constraint: constraint((T0384)G179.CA, (T0384)N210.CB) [> 3.1192 = 5.1987 < 6.7583] w=0.0062 to align # Constraint # added constraint: constraint((T0384)G179.CA, (T0384)D208.CB) [> 4.3098 = 7.1830 < 9.3379] w=0.0062 to align # Constraint # added constraint: constraint((T0384)A148.CB, (T0384)L175.CB) [> 4.4100 = 7.3500 < 9.5550] w=0.0058 to align # Constraint # added constraint: constraint((T0384)K149.CB, (T0384)L175.CB) [> 3.5260 = 5.8766 < 7.6396] w=0.0058 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)K153.CB) [> 3.1842 = 5.3070 < 6.8991] w=0.0034 to align # Constraint # added constraint: constraint((T0384)I131.CB, (T0384)K149.CB) [> 4.2775 = 7.1292 < 9.2680] w=0.0016 to align # Constraint # added constraint: constraint((T0384)F134.CB, (T0384)Y147.CB) [> 4.1330 = 6.8884 < 8.9549] w=0.0016 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)Y147.CB) [> 3.5440 = 5.9066 < 7.6786] w=0.0016 to align # Constraint # added constraint: constraint((T0384)L141.CB, (T0384)K225.CB) [> 4.2873 = 7.1455 < 9.2892] w=0.0016 to align # Constraint # added constraint: constraint((T0384)L135.CB, (T0384)I224.CB) [> 4.2887 = 7.1478 < 9.2921] w=0.0009 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0384/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0384/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 312 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 322 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 310 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 315 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 315 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 315 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 322 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 308 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 313 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 320 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 315 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 315 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 315 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 315 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 324 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 323 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 321 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 WARNING: atom 1 has residue number 267 < previous residue 325 in servers/POMYSL_TS2.pdb.gz # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 313 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 322 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 322 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 317 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 264 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 250 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 315 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 315 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 264 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 324 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 324 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 Skipped atom 610, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 612, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 614, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 616, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1262, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1264, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1266, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 1268, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 313 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 315 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 314 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 315 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 311 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 Skipped atom 826, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 828, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 830, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 832, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 291 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 316 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 318 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 324 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 324 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0384)L65.O and (T0384)V66.N only 0.000 apart, marking (T0384)V66.N as missing WARNING: atoms too close: (T0384)A226.O and (T0384)G227.N only 0.000 apart, marking (T0384)G227.N as missing # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0384)V57.O and (T0384)F58.N only 0.000 apart, marking (T0384)F58.N as missing # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 322 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 322 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0384 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 323 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 0.3947 model score 0.3877 model score 0.3926 model score 0.3995 model score 0.3941 model score 0.4051 model score 0.3965 model score 0.4083 model score 0.4016 model score 0.3972 model score 0.4097 model score 0.4080 model score 0.4057 model score 0.4021 model score 0.4112 model score -0.0700 model score -0.0698 model score -0.0637 model score -0.0486 model score -0.0611 model score 1.6234 model score 1.3541 model score 1.4951 model score 1.3036 model score 1.4762 model score -0.1366 model score -0.0933 model score -0.1017 model score -0.1143 model score -0.0880 model score -0.1273 model score -0.0432 model score -0.0554 model score -0.0571 model score -0.0312 model score -0.0715 model score 0.2621 model score 0.4375 model score 0.3730 model score 0.1898 model score -0.0629 model score 0.4495 model score 1.2738 model score 1.2738 model score 1.2742 model score 1.2759 model score 1.2742 model score -0.0791 model score 0.0227 model score -0.0139 model score -0.0909 model score -0.0849 model score -0.0546 model score -0.0388 model score -0.0849 model score -0.0312 model score -0.0432 model score -0.0868 model score -0.0688 model score -0.0841 model score -0.0790 model score -0.0679 model score 1.2756 model score 1.2762 model score 1.2765 model score 1.2735 model score 1.2754 model score 1.2756 model score 1.2762 model score 1.2765 model score 1.2735 model score 1.2754 model score 2.5055 model score 2.4038 model score 2.3978 model score 2.4844 model score 2.6214 model score 0.0230 model score 0.1805 model score 0.1716 model score 0.6479 model score 0.3528 model score 1.2739 model score 1.2766 model score 1.2741 model score 1.2771 model score 1.2771 model score -0.0297 model score -0.0645 model score -0.0150 model score 0.2465 model score -0.0388 model score 0.0971 model score 0.1043 model score 0.1507 model score 0.1933 model score 0.2873 model score -0.0420 model score -0.0565 model score -0.0499 model score -0.0109 model score -0.0913 model score -0.0980 model score -0.1584 model score -0.1504 model score 0.1029 model score 0.2875 model score 0.1239 model score 0.2877 model score 0.5891 model score 0.1011 model score -0.0088 model score 0.1359 model score 0.1381 model score 0.4857 model score -0.0805 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score -0.0325 model score -0.0400 model score -0.0716 model score -0.0535 model score -0.0647 model score -0.0355 model score -0.0666 model score -0.0753 model score -0.0570 model score -0.0807 model score -0.0670 model score -0.0658 model score -0.0753 model score -0.0466 model score -0.0652 model score -0.1110 model score -0.1017 model score -0.0903 model score -0.1063 model score -0.0815 model score -0.0808 model score 1.2741 model score 1.2742 model score 1.2741 model score 1.2741 model score 1.2741 model score 1.2741 model score 1.2741 model score 1.2741 model score 1.2741 model score 1.2741 model score -0.0559 model score -0.0741 model score 0.4343 model score -0.0462 model score 0.2203 model score -0.0226 model score -0.1202 model score 0.0629 model score 0.1279 model score 0.1010 model score -0.0187 model score -0.1152 model score 0.0447 model score 0.1310 model score 0.0978 model score -0.0259 model score -0.1086 model score 0.2021 model score 0.0561 model score 0.1182 model 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min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.9919 eval: 0.0002 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.9873 eval: 0.0003 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.9873 eval: 0.0003 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.9873 eval: 0.0003 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.9996 eval: 0.0000 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.9996 eval: 0.0000 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.9996 eval: 0.0000 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.4621 eval: 0.0106 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.4621 eval: 0.0106 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.4621 eval: 0.0106 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.9746 eval: 0.0005 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.9746 eval: 0.0005 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.9746 eval: 0.0005 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.9985 eval: 0.0000 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.9985 eval: 0.0000 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 0.9985 eval: 0.0000 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0177 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0177 Number of contacts in models: 268 Number of contacts in alignments: 150 NUMB_ALIGNS: 150 Adding 17074 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -578.9767, CN propb: -578.9767 weights: 0.2714 constraints: 1331 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 1331 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 1331 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 15743 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 15743 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 17074 # command: