# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0383/ # command:# Making conformation for sequence T0383 numbered 1 through 127 Created new target T0383 from T0383.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0383/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0383//projects/compbio/experiments/protein-predict/casp7/T0383/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0383//projects/compbio/experiments/protein-predict/casp7/T0383/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0383/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0383/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0383)L58.CB, (T0383)I73.CB) [> 4.2645 = 7.1075 < 9.2398] w=0.9795 to align # Constraint # added constraint: constraint((T0383)I57.CB, (T0383)T72.CB) [> 3.6845 = 6.1408 < 7.9830] w=0.9795 to align # Constraint # added constraint: constraint((T0383)V56.CB, (T0383)S74.CB) [> 4.0307 = 6.7179 < 8.7332] w=0.9795 to align # Constraint # added constraint: constraint((T0383)I55.CB, (T0383)Q75.CB) [> 4.1104 = 6.8507 < 8.9059] w=0.9795 to align # Constraint # added constraint: constraint((T0383)I55.CB, (T0383)S74.CB) [> 3.1645 = 5.2742 < 6.8564] w=0.9795 to align # Constraint # added constraint: constraint((T0383)I79.CB, (T0383)L90.CB) [> 4.1731 = 6.9551 < 9.0417] w=0.9453 to align # Constraint # added constraint: constraint((T0383)L58.CB, (T0383)G71.CA) [> 3.5743 = 5.9572 < 7.7444] w=0.9185 to align # Constraint # added constraint: constraint((T0383)F60.CB, (T0383)S70.CB) [> 4.2198 = 7.0331 < 9.1430] w=0.9082 to align # Constraint # added constraint: constraint((T0383)S59.CB, (T0383)G71.CA) [> 3.7817 = 6.3029 < 8.1938] w=0.9082 to align # Constraint # added constraint: constraint((T0383)I57.CB, (T0383)S74.CB) [> 3.5041 = 5.8402 < 7.5923] w=0.8903 to align # Constraint # added constraint: constraint((T0383)I55.CB, (T0383)C102.CB) [> 4.6815 = 7.8026 < 10.1433] w=0.8472 to align # Constraint # added constraint: constraint((T0383)V56.CB, (T0383)T72.CB) [> 4.5427 = 7.5712 < 9.8425] w=0.8472 to align # Constraint # added constraint: constraint((T0383)V56.CB, (T0383)I73.CB) [> 3.3826 = 5.6376 < 7.3289] w=0.8472 to align # Constraint # added constraint: constraint((T0383)S59.CB, (T0383)I69.CB) [> 4.3861 = 7.3101 < 9.5031] w=0.8472 to align # Constraint # added constraint: constraint((T0383)F60.CB, (T0383)I69.CB) [> 2.9573 = 4.9288 < 6.4074] w=0.8472 to align # Constraint # added constraint: constraint((T0383)I73.CB, (T0383)M105.CB) [> 3.4394 = 5.7323 < 7.4520] w=0.8472 to align # Constraint # added constraint: constraint((T0383)Q75.CB, (T0383)P101.CB) [> 3.5367 = 5.8945 < 7.6628] w=0.8472 to align # Constraint # added constraint: constraint((T0383)N77.CB, (T0383)L98.CB) [> 3.3340 = 5.5567 < 7.2237] w=0.8472 to align # Constraint # added constraint: constraint((T0383)M61.CB, (T0383)S70.CB) [> 3.5543 = 5.9239 < 7.7011] w=0.8294 to align # Constraint # added constraint: constraint((T0383)I55.CB, (T0383)N77.CB) [> 3.9434 = 6.5723 < 8.5440] w=0.8227 to align # Constraint # added constraint: constraint((T0383)S59.CB, (T0383)T72.CB) [> 4.4063 = 7.3439 < 9.5471] w=0.8191 to align # Constraint # added constraint: constraint((T0383)D80.CB, (T0383)L90.CB) [> 4.0811 = 6.8018 < 8.8423] w=0.7526 to align # Constraint # added constraint: constraint((T0383)I79.CB, (T0383)V95.CB) [> 3.9155 = 6.5259 < 8.4837] w=0.7526 to align # Constraint # added constraint: constraint((T0383)I57.CB, (T0383)I73.CB) [> 3.7227 = 6.2045 < 8.0659] w=0.7355 to align # Constraint # added constraint: constraint((T0383)L58.CB, (T0383)T72.CB) [> 4.1170 = 6.8617 < 8.9202] w=0.7355 to align # Constraint # added constraint: constraint((T0383)L54.CB, (T0383)V76.CB) [> 4.6626 = 7.7710 < 10.1023] w=0.6887 to align # Constraint # added constraint: constraint((T0383)V51.CB, (T0383)N77.CB) [> 4.3636 = 7.2727 < 9.4545] w=0.6850 to align # Constraint # added constraint: constraint((T0383)V51.CB, (T0383)V76.CB) [> 3.8060 = 6.3433 < 8.2463] w=0.6850 to align # Constraint # added constraint: constraint((T0383)Q50.CB, (T0383)I79.CB) [> 3.4491 = 5.7485 < 7.4731] w=0.6783 to align # Constraint # added constraint: constraint((T0383)T114.CB, (T0383)I123.CB) [> 3.5888 = 5.9813 < 7.7758] w=0.6313 to align # Constraint # added constraint: constraint((T0383)G81.CA, (T0383)L90.CB) [> 2.9004 = 4.8341 < 6.2843] w=0.6290 to align # Constraint # added constraint: constraint((T0383)S53.CB, (T0383)N77.CB) [> 4.4977 = 7.4961 < 9.7450] w=0.6277 to align # Constraint # added constraint: constraint((T0383)S53.CB, (T0383)V76.CB) [> 3.0254 = 5.0422 < 6.5549] w=0.6277 to align # Constraint # added constraint: constraint((T0383)I55.CB, (T0383)L98.CB) [> 4.2482 = 7.0803 < 9.2044] w=0.6229 to align # Constraint # added constraint: constraint((T0383)V76.CB, (T0383)C102.CB) [> 4.0187 = 6.6979 < 8.7072] w=0.6223 to align # Constraint # added constraint: constraint((T0383)V51.CB, (T0383)H78.CB) [> 3.3788 = 5.6314 < 7.3208] w=0.6174 to align # Constraint # added constraint: constraint((T0383)L58.CB, (T0383)I69.CB) [> 4.2696 = 7.1160 < 9.2508] w=0.6033 to align # Constraint # added constraint: constraint((T0383)L58.CB, (T0383)S74.CB) [> 3.7636 = 6.2726 < 8.1544] w=0.5995 to align # Constraint # added constraint: constraint((T0383)V56.CB, (T0383)N77.CB) [> 3.1235 = 5.2058 < 6.7675] w=0.5995 to align # Constraint # added constraint: constraint((T0383)V56.CB, (T0383)L106.CB) [> 3.4656 = 5.7760 < 7.5088] w=0.5668 to align # Constraint # added constraint: constraint((T0383)V113.CB, (T0383)I123.CB) [> 3.6216 = 6.0359 < 7.8467] w=0.5646 to align # Constraint # added constraint: constraint((T0383)T34.CB, (T0383)I62.CB) [> 3.6463 = 6.0771 < 7.9003] w=0.5564 to align # Constraint # added constraint: constraint((T0383)T34.CB, (T0383)V63.CB) [> 3.5078 = 5.8464 < 7.6003] w=0.5564 to align # Constraint # added constraint: constraint((T0383)D37.CB, (T0383)S59.CB) [> 3.3905 = 5.6508 < 7.3460] w=0.5564 to align # Constraint # added constraint: constraint((T0383)N39.CB, (T0383)I57.CB) [> 3.2945 = 5.4909 < 7.1382] w=0.5564 to align # Constraint # added constraint: constraint((T0383)V51.CB, (T0383)I79.CB) [> 4.7786 = 7.9643 < 10.3536] w=0.5564 to align # Constraint # added constraint: constraint((T0383)T52.CB, (T0383)V76.CB) [> 4.4106 = 7.3509 < 9.5562] w=0.5564 to align # Constraint # added constraint: constraint((T0383)T52.CB, (T0383)N77.CB) [> 3.2461 = 5.4102 < 7.0332] w=0.5564 to align # Constraint # added constraint: constraint((T0383)T52.CB, (T0383)I79.CB) [> 3.4585 = 5.7642 < 7.4934] w=0.5564 to align # Constraint # added constraint: constraint((T0383)T52.CB, (T0383)L98.CB) [> 4.6689 = 7.7814 < 10.1159] w=0.5564 to align # Constraint # added constraint: constraint((T0383)S53.CB, (T0383)Q75.CB) [> 4.1564 = 6.9273 < 9.0054] w=0.5564 to align # Constraint # added constraint: constraint((T0383)L54.CB, (T0383)S74.CB) [> 4.0624 = 6.7707 < 8.8019] w=0.5564 to align # Constraint # added constraint: constraint((T0383)L54.CB, (T0383)Q75.CB) [> 3.1476 = 5.2460 < 6.8198] w=0.5564 to align # Constraint # added constraint: constraint((T0383)N29.CB, (T0383)F64.CB) [> 3.3811 = 5.6352 < 7.3257] w=0.5564 to align # Constraint # added constraint: constraint((T0383)D19.CB, (T0383)I69.CB) [> 4.5540 = 7.5901 < 9.8671] w=0.5564 to align # Constraint # added constraint: constraint((T0383)F18.CB, (T0383)I116.CB) [> 4.1288 = 6.8813 < 8.9457] w=0.5564 to align # Constraint # added constraint: constraint((T0383)F18.CB, (T0383)V113.CB) [> 3.7503 = 6.2505 < 8.1256] w=0.5564 to align # Constraint # added constraint: constraint((T0383)F18.CB, (T0383)S70.CB) [> 4.7058 = 7.8430 < 10.1959] w=0.5564 to align # Constraint # added constraint: constraint((T0383)F18.CB, (T0383)I69.CB) [> 2.9750 = 4.9584 < 6.4459] w=0.5564 to align # Constraint # added constraint: constraint((T0383)F18.CB, (T0383)V68.CB) [> 4.3099 = 7.1831 < 9.3381] w=0.5564 to align # Constraint # added constraint: constraint((T0383)F18.CB, (T0383)F67.CB) [> 4.0531 = 6.7552 < 8.7818] w=0.5564 to align # Constraint # added constraint: constraint((T0383)T110.CB, (T0383)I123.CB) [> 3.8436 = 6.4061 < 8.3279] w=0.5564 to align # Constraint # added constraint: constraint((T0383)N107.CB, (T0383)L125.CB) [> 2.8128 = 4.6881 < 6.0945] w=0.5564 to align # Constraint # added constraint: constraint((T0383)L103.CB, (T0383)L125.CB) [> 4.6396 = 7.7326 < 10.0524] w=0.5564 to align # Constraint # added constraint: constraint((T0383)Q75.CB, (T0383)C102.CB) [> 3.1418 = 5.2363 < 6.8072] w=0.5564 to align # Constraint # added constraint: constraint((T0383)Q75.CB, (T0383)L98.CB) [> 3.8528 = 6.4214 < 8.3478] w=0.5564 to align # Constraint # added constraint: constraint((T0383)I73.CB, (T0383)L103.CB) [> 4.6889 = 7.8148 < 10.1593] w=0.5564 to align # Constraint # added constraint: constraint((T0383)I73.CB, (T0383)C102.CB) [> 2.9299 = 4.8832 < 6.3482] w=0.5564 to align # Constraint # added constraint: constraint((T0383)I69.CB, (T0383)V113.CB) [> 3.5725 = 5.9541 < 7.7404] w=0.5564 to align # Constraint # added constraint: constraint((T0383)I62.CB, (T0383)I123.CB) [> 4.5052 = 7.5087 < 9.7614] w=0.5564 to align # Constraint # added constraint: constraint((T0383)F60.CB, (T0383)L125.CB) [> 4.5881 = 7.6469 < 9.9410] w=0.5564 to align # Constraint # added constraint: constraint((T0383)L54.CB, (T0383)L98.CB) [> 2.5050 = 4.1751 < 5.4276] w=0.5564 to align # Constraint # added constraint: constraint((T0383)L54.CB, (T0383)A99.CB) [> 3.7206 = 6.2010 < 8.0613] w=0.5564 to align # Constraint # added constraint: constraint((T0383)L54.CB, (T0383)C102.CB) [> 3.8173 = 6.3622 < 8.2708] w=0.5564 to align # Constraint # added constraint: constraint((T0383)I55.CB, (T0383)T72.CB) [> 3.3769 = 5.6282 < 7.3167] w=0.5564 to align # Constraint # added constraint: constraint((T0383)V56.CB, (T0383)A99.CB) [> 2.9676 = 4.9460 < 6.4298] w=0.5564 to align # Constraint # added constraint: constraint((T0383)V56.CB, (T0383)L103.CB) [> 3.9324 = 6.5540 < 8.5202] w=0.5564 to align # Constraint # added constraint: constraint((T0383)I57.CB, (T0383)S70.CB) [> 4.4876 = 7.4793 < 9.7231] w=0.5564 to align # Constraint # added constraint: constraint((T0383)I57.CB, (T0383)G71.CA) [> 3.8723 = 6.4539 < 8.3901] w=0.5564 to align # Constraint # added constraint: constraint((T0383)L58.CB, (T0383)S70.CB) [> 4.3270 = 7.2116 < 9.3751] w=0.5564 to align # Constraint # added constraint: constraint((T0383)L58.CB, (T0383)L106.CB) [> 2.9809 = 4.9681 < 6.4585] w=0.5564 to align # Constraint # added constraint: constraint((T0383)L58.CB, (T0383)L125.CB) [> 4.3889 = 7.3148 < 9.5092] w=0.5564 to align # Constraint # added constraint: constraint((T0383)F60.CB, (T0383)I123.CB) [> 4.3425 = 7.2375 < 9.4087] w=0.5564 to align # Constraint # added constraint: constraint((T0383)M61.CB, (T0383)G71.CA) [> 3.5393 = 5.8988 < 7.6684] w=0.5386 to align # Constraint # added constraint: constraint((T0383)M61.CB, (T0383)T72.CB) [> 2.5826 = 4.3043 < 5.5956] w=0.5386 to align # Constraint # added constraint: constraint((T0383)M61.CB, (T0383)I73.CB) [> 4.6168 = 7.6946 < 10.0030] w=0.5386 to align # Constraint # added constraint: constraint((T0383)I62.CB, (T0383)G71.CA) [> 3.2702 = 5.4504 < 7.0855] w=0.5386 to align # Constraint # added constraint: constraint((T0383)Q75.CB, (T0383)M105.CB) [> 4.7078 = 7.8463 < 10.2002] w=0.5347 to align # Constraint # added constraint: constraint((T0383)I55.CB, (T0383)V76.CB) [> 3.4672 = 5.7786 < 7.5122] w=0.5319 to align # Constraint # added constraint: constraint((T0383)I83.CB, (T0383)V95.CB) [> 3.9887 = 6.6478 < 8.6422] w=0.5168 to align # Constraint # added constraint: constraint((T0383)I57.CB, (T0383)Q75.CB) [> 4.2866 = 7.1444 < 9.2877] w=0.4673 to align # Constraint # added constraint: constraint((T0383)I57.CB, (T0383)V76.CB) [> 3.5205 = 5.8674 < 7.6277] w=0.4673 to align # Constraint # added constraint: constraint((T0383)I57.CB, (T0383)N77.CB) [> 4.6673 = 7.7789 < 10.1126] w=0.4673 to align # Constraint # added constraint: constraint((T0383)L58.CB, (T0383)Q75.CB) [> 3.8741 = 6.4568 < 8.3938] w=0.4673 to align # Constraint # added constraint: constraint((T0383)L58.CB, (T0383)N77.CB) [> 4.0365 = 6.7275 < 8.7457] w=0.4673 to align # Constraint # added constraint: constraint((T0383)S59.CB, (T0383)S74.CB) [> 2.1525 = 3.5875 < 4.6638] w=0.4673 to align # Constraint # added constraint: constraint((T0383)F60.CB, (T0383)T72.CB) [> 4.4056 = 7.3427 < 9.5455] w=0.4673 to align # Constraint # added constraint: constraint((T0383)F60.CB, (T0383)I73.CB) [> 3.3860 = 5.6434 < 7.3364] w=0.4673 to align # Constraint # added constraint: constraint((T0383)F60.CB, (T0383)S74.CB) [> 4.0189 = 6.6982 < 8.7077] w=0.4673 to align # Constraint # added constraint: constraint((T0383)V76.CB, (T0383)L103.CB) [> 4.2773 = 7.1289 < 9.2676] w=0.4643 to align # Constraint # added constraint: constraint((T0383)V38.CB, (T0383)V56.CB) [> 4.2885 = 7.1475 < 9.2917] w=0.4523 to align # Constraint # added constraint: constraint((T0383)V36.CB, (T0383)M61.CB) [> 4.5541 = 7.5902 < 9.8673] w=0.4523 to align # Constraint # added constraint: constraint((T0383)V36.CB, (T0383)F60.CB) [> 3.2974 = 5.4957 < 7.1444] w=0.4523 to align # Constraint # added constraint: constraint((T0383)V36.CB, (T0383)S59.CB) [> 4.2995 = 7.1659 < 9.3156] w=0.4523 to align # Constraint # added constraint: constraint((T0383)V36.CB, (T0383)L58.CB) [> 4.2728 = 7.1213 < 9.2577] w=0.4523 to align # Constraint # added constraint: constraint((T0383)K35.CB, (T0383)M61.CB) [> 4.1480 = 6.9134 < 8.9874] w=0.4523 to align # Constraint # added constraint: constraint((T0383)K35.CB, (T0383)F60.CB) [> 3.9964 = 6.6607 < 8.6589] w=0.4523 to align # Constraint # added constraint: constraint((T0383)P32.CB, (T0383)D65.CB) [> 3.3109 = 5.5182 < 7.1737] w=0.4523 to align # Constraint # added constraint: constraint((T0383)A31.CB, (T0383)F64.CB) [> 4.2738 = 7.1231 < 9.2600] w=0.4523 to align # Constraint # added constraint: constraint((T0383)L43.CB, (T0383)S53.CB) [> 3.1758 = 5.2929 < 6.8808] w=0.4523 to align # Constraint # added constraint: constraint((T0383)L43.CB, (T0383)T52.CB) [> 3.9777 = 6.6295 < 8.6183] w=0.4523 to align # Constraint # added constraint: constraint((T0383)L42.CB, (T0383)L54.CB) [> 3.5078 = 5.8464 < 7.6003] w=0.4523 to align # Constraint # added constraint: constraint((T0383)L42.CB, (T0383)S53.CB) [> 4.4959 = 7.4932 < 9.7411] w=0.4523 to align # Constraint # added constraint: constraint((T0383)L42.CB, (T0383)T52.CB) [> 3.4763 = 5.7939 < 7.5321] w=0.4523 to align # Constraint # added constraint: constraint((T0383)F40.CB, (T0383)I57.CB) [> 4.2726 = 7.1210 < 9.2573] w=0.4523 to align # Constraint # added constraint: constraint((T0383)F40.CB, (T0383)V56.CB) [> 3.6164 = 6.0273 < 7.8355] w=0.4523 to align # Constraint # added constraint: constraint((T0383)F40.CB, (T0383)L54.CB) [> 4.0922 = 6.8204 < 8.8665] w=0.4523 to align # Constraint # added constraint: constraint((T0383)V38.CB, (T0383)S59.CB) [> 4.5654 = 7.6090 < 9.8918] w=0.4523 to align # Constraint # added constraint: constraint((T0383)V38.CB, (T0383)L58.CB) [> 3.7030 = 6.1717 < 8.0232] w=0.4523 to align # Constraint # added constraint: constraint((T0383)V38.CB, (T0383)I57.CB) [> 4.1887 = 6.9813 < 9.0756] w=0.4523 to align # Constraint # added constraint: constraint((T0383)L106.CB, (T0383)I116.CB) [> 3.6973 = 6.1622 < 8.0108] w=0.4485 to align # Constraint # added constraint: constraint((T0383)Y111.CB, (T0383)I123.CB) [> 3.6547 = 6.0911 < 7.9184] w=0.4401 to align # Constraint # added constraint: constraint((T0383)T110.CB, (T0383)L125.CB) [> 4.0580 = 6.7633 < 8.7923] w=0.4351 to align # Constraint # added constraint: constraint((T0383)L109.CB, (T0383)D119.CB) [> 4.2199 = 7.0331 < 9.1431] w=0.4034 to align # Constraint # added constraint: constraint((T0383)H78.CB, (T0383)V95.CB) [> 3.5527 = 5.9212 < 7.6975] w=0.3967 to align # Constraint # added constraint: constraint((T0383)H78.CB, (T0383)A99.CB) [> 3.9363 = 6.5605 < 8.5286] w=0.3967 to align # Constraint # added constraint: constraint((T0383)E11.CB, (T0383)Q75.CB) [> 2.8133 = 4.6888 < 6.0954] w=0.3709 to align # Constraint # added constraint: constraint((T0383)Q10.CB, (T0383)V76.CB) [> 2.8445 = 4.7408 < 6.1631] w=0.3709 to align # Constraint # added constraint: constraint((T0383)R8.CB, (T0383)P101.CB) [> 4.1778 = 6.9630 < 9.0519] w=0.3709 to align # Constraint # added constraint: constraint((T0383)R8.CB, (T0383)Q75.CB) [> 3.8778 = 6.4630 < 8.4019] w=0.3709 to align # Constraint # added constraint: constraint((T0383)K7.CB, (T0383)H78.CB) [> 2.7145 = 4.5242 < 5.8814] w=0.3709 to align # Constraint # added constraint: constraint((T0383)L6.CB, (T0383)I79.CB) [> 3.6036 = 6.0061 < 7.8079] w=0.3709 to align # Constraint # added constraint: constraint((T0383)L6.CB, (T0383)H78.CB) [> 4.4066 = 7.3443 < 9.5476] w=0.3709 to align # Constraint # added constraint: constraint((T0383)L6.CB, (T0383)N77.CB) [> 4.0916 = 6.8193 < 8.8651] w=0.3709 to align # Constraint # added constraint: constraint((T0383)N5.CB, (T0383)D80.CB) [> 2.6156 = 4.3594 < 5.6673] w=0.3709 to align # Constraint # added constraint: constraint((T0383)H17.CB, (T0383)G71.CA) [> 3.8970 = 6.4950 < 8.4436] w=0.3709 to align # Constraint # added constraint: constraint((T0383)H17.CB, (T0383)I69.CB) [> 4.0589 = 6.7648 < 8.7943] w=0.3709 to align # Constraint # added constraint: constraint((T0383)H17.CB, (T0383)V68.CB) [> 4.3522 = 7.2537 < 9.4298] w=0.3709 to align # Constraint # added constraint: constraint((T0383)Y16.CB, (T0383)T72.CB) [> 4.2871 = 7.1451 < 9.2886] w=0.3709 to align # Constraint # added constraint: constraint((T0383)Y16.CB, (T0383)G71.CA) [> 3.0051 = 5.0084 < 6.5110] w=0.3709 to align # Constraint # added constraint: constraint((T0383)Y16.CB, (T0383)S70.CB) [> 4.3468 = 7.2446 < 9.4180] w=0.3709 to align # Constraint # added constraint: constraint((T0383)Q15.CB, (T0383)T72.CB) [> 2.4125 = 4.0208 < 5.2271] w=0.3709 to align # Constraint # added constraint: constraint((T0383)F12.CB, (T0383)S74.CB) [> 3.3852 = 5.6420 < 7.3346] w=0.3709 to align # Constraint # added constraint: constraint((T0383)F12.CB, (T0383)Q75.CB) [> 4.2790 = 7.1317 < 9.2711] w=0.3709 to align # Constraint # added constraint: constraint((T0383)V13.CB, (T0383)G71.CA) [> 4.1381 = 6.8968 < 8.9658] w=0.3709 to align # Constraint # added constraint: constraint((T0383)V13.CB, (T0383)T72.CB) [> 3.9160 = 6.5266 < 8.4846] w=0.3709 to align # Constraint # added constraint: constraint((T0383)V13.CB, (T0383)I73.CB) [> 3.4231 = 5.7051 < 7.4167] w=0.3709 to align # Constraint # added constraint: constraint((T0383)V13.CB, (T0383)M105.CB) [> 4.7095 = 7.8491 < 10.2038] w=0.3709 to align # Constraint # added constraint: constraint((T0383)R82.CB, (T0383)E94.CB) [> 4.1908 = 6.9847 < 9.0802] w=0.3614 to align # Constraint # added constraint: constraint((T0383)L43.CB, (T0383)L54.CB) [> 4.7006 = 7.8343 < 10.1846] w=0.3585 to align # Constraint # added constraint: constraint((T0383)I79.CB, (T0383)T97.CB) [> 4.6087 = 7.6811 < 9.9854] w=0.3580 to align # Constraint # added constraint: constraint((T0383)E33.CB, (T0383)V63.CB) [> 3.7663 = 6.2772 < 8.1604] w=0.3481 to align # Constraint # added constraint: constraint((T0383)T34.CB, (T0383)F64.CB) [> 4.0465 = 6.7441 < 8.7674] w=0.3481 to align # Constraint # added constraint: constraint((T0383)V36.CB, (T0383)L125.CB) [> 4.3099 = 7.1832 < 9.3381] w=0.3481 to align # Constraint # added constraint: constraint((T0383)L42.CB, (T0383)I55.CB) [> 4.4977 = 7.4962 < 9.7450] w=0.3481 to align # Constraint # added constraint: constraint((T0383)N107.CB, (T0383)I116.CB) [> 3.2028 = 5.3380 < 6.9394] w=0.3321 to align # Constraint # added constraint: constraint((T0383)R108.CB, (T0383)A117.CB) [> 3.5090 = 5.8484 < 7.6029] w=0.3321 to align # Constraint # added constraint: constraint((T0383)R108.CB, (T0383)L118.CB) [> 4.0803 = 6.8005 < 8.8406] w=0.3321 to align # Constraint # added constraint: constraint((T0383)L109.CB, (T0383)L118.CB) [> 3.3527 = 5.5879 < 7.2642] w=0.3321 to align # Constraint # added constraint: constraint((T0383)F18.CB, (T0383)E112.CB) [> 2.5781 = 4.2968 < 5.5858] w=0.3125 to align # Constraint # added constraint: constraint((T0383)F18.CB, (T0383)E115.CB) [> 4.3693 = 7.2821 < 9.4668] w=0.3125 to align # Constraint # added constraint: constraint((T0383)A20.CB, (T0383)I116.CB) [> 2.8713 = 4.7855 < 6.2212] w=0.3125 to align # Constraint # added constraint: constraint((T0383)A20.CB, (T0383)L118.CB) [> 4.7196 = 7.8660 < 10.2257] w=0.3125 to align # Constraint # added constraint: constraint((T0383)F23.CB, (T0383)F67.CB) [> 4.7296 = 7.8826 < 10.2474] w=0.3125 to align # Constraint # added constraint: constraint((T0383)F23.CB, (T0383)I116.CB) [> 4.0883 = 6.8137 < 8.8579] w=0.3125 to align # Constraint # added constraint: constraint((T0383)F60.CB, (T0383)V113.CB) [> 4.7644 = 7.9406 < 10.3228] w=0.3125 to align # Constraint # added constraint: constraint((T0383)I62.CB, (T0383)L118.CB) [> 4.4172 = 7.3621 < 9.5707] w=0.3125 to align # Constraint # added constraint: constraint((T0383)F67.CB, (T0383)V113.CB) [> 4.1605 = 6.9342 < 9.0145] w=0.3125 to align # Constraint # added constraint: constraint((T0383)F67.CB, (T0383)I116.CB) [> 3.2716 = 5.4526 < 7.0884] w=0.3125 to align # Constraint # added constraint: constraint((T0383)F67.CB, (T0383)L118.CB) [> 3.7106 = 6.1843 < 8.0396] w=0.3125 to align # Constraint # added constraint: constraint((T0383)L109.CB, (T0383)I123.CB) [> 4.0858 = 6.8096 < 8.8525] w=0.3125 to align # Constraint # added constraint: constraint((T0383)T110.CB, (T0383)L120.CB) [> 4.0464 = 6.7439 < 8.7671] w=0.3125 to align # Constraint # added constraint: constraint((T0383)T110.CB, (T0383)N124.CB) [> 3.5620 = 5.9367 < 7.7177] w=0.3125 to align # Constraint # added constraint: constraint((T0383)V113.CB, (T0383)L125.CB) [> 3.7978 = 6.3297 < 8.2286] w=0.3076 to align # Constraint # added constraint: constraint((T0383)I55.CB, (T0383)I79.CB) [> 4.7415 = 7.9025 < 10.2733] w=0.2908 to align # Constraint # added constraint: constraint((T0383)I55.CB, (T0383)M105.CB) [> 4.2616 = 7.1027 < 9.2335] w=0.2908 to align # Constraint # added constraint: constraint((T0383)I57.CB, (T0383)M105.CB) [> 3.3908 = 5.6514 < 7.3468] w=0.2908 to align # Constraint # added constraint: constraint((T0383)I55.CB, (T0383)H78.CB) [> 3.3839 = 5.6398 < 7.3317] w=0.2645 to align # Constraint # added constraint: constraint((T0383)K35.CB, (T0383)I123.CB) [> 4.5194 = 7.5323 < 9.7920] w=0.2439 to align # Constraint # added constraint: constraint((T0383)E33.CB, (T0383)P121.CB) [> 4.3628 = 7.2713 < 9.4527] w=0.2439 to align # Constraint # added constraint: constraint((T0383)A31.CB, (T0383)P121.CB) [> 3.6028 = 6.0046 < 7.8060] w=0.2439 to align # Constraint # added constraint: constraint((T0383)N29.CB, (T0383)K66.CB) [> 4.2906 = 7.1510 < 9.2963] w=0.2439 to align # Constraint # added constraint: constraint((T0383)F23.CB, (T0383)A117.CB) [> 4.6189 = 7.6981 < 10.0076] w=0.2439 to align # Constraint # added constraint: constraint((T0383)R21.CB, (T0383)V68.CB) [> 4.6807 = 7.8011 < 10.1414] w=0.2439 to align # Constraint # added constraint: constraint((T0383)A20.CB, (T0383)L120.CB) [> 4.5159 = 7.5265 < 9.7845] w=0.2439 to align # Constraint # added constraint: constraint((T0383)A20.CB, (T0383)A117.CB) [> 2.7726 = 4.6209 < 6.0072] w=0.2439 to align # Constraint # added constraint: constraint((T0383)F18.CB, (T0383)T114.CB) [> 4.5517 = 7.5862 < 9.8620] w=0.2439 to align # Constraint # added constraint: constraint((T0383)Y111.CB, (T0383)N124.CB) [> 3.1420 = 5.2366 < 6.8076] w=0.2439 to align # Constraint # added constraint: constraint((T0383)Y111.CB, (T0383)G122.CA) [> 3.8294 = 6.3823 < 8.2970] w=0.2439 to align # Constraint # added constraint: constraint((T0383)I69.CB, (T0383)T114.CB) [> 3.8155 = 6.3592 < 8.2669] w=0.2439 to align # Constraint # added constraint: constraint((T0383)F67.CB, (T0383)L120.CB) [> 3.6901 = 6.1502 < 7.9953] w=0.2439 to align # Constraint # added constraint: constraint((T0383)F67.CB, (T0383)A117.CB) [> 3.2023 = 5.3372 < 6.9383] w=0.2439 to align # Constraint # added constraint: constraint((T0383)I62.CB, (T0383)L120.CB) [> 4.4161 = 7.3601 < 9.5682] w=0.2439 to align # Constraint # added constraint: constraint((T0383)I62.CB, (T0383)T114.CB) [> 4.7605 = 7.9341 < 10.3143] w=0.2439 to align # Constraint # added constraint: constraint((T0383)K7.CB, (T0383)I79.CB) [> 4.7087 = 7.8478 < 10.2022] w=0.2083 to align # Constraint # added constraint: constraint((T0383)R8.CB, (T0383)V76.CB) [> 4.5269 = 7.5448 < 9.8082] w=0.2083 to align # Constraint # added constraint: constraint((T0383)F12.CB, (T0383)I73.CB) [> 4.6768 = 7.7946 < 10.1330] w=0.2083 to align # Constraint # added constraint: constraint((T0383)Y16.CB, (T0383)E112.CB) [> 4.3349 = 7.2249 < 9.3924] w=0.2083 to align # Constraint # added constraint: constraint((T0383)T34.CB, (T0383)F60.CB) [> 3.9997 = 6.6662 < 8.6660] w=0.2083 to align # Constraint # added constraint: constraint((T0383)T34.CB, (T0383)M61.CB) [> 3.1792 = 5.2987 < 6.8883] w=0.2083 to align # Constraint # added constraint: constraint((T0383)D37.CB, (T0383)M61.CB) [> 3.3777 = 5.6295 < 7.3184] w=0.2083 to align # Constraint # added constraint: constraint((T0383)N39.CB, (T0383)S59.CB) [> 3.5352 = 5.8920 < 7.6596] w=0.2083 to align # Constraint # added constraint: constraint((T0383)V56.CB, (T0383)V84.CB) [> 3.9028 = 6.5047 < 8.4561] w=0.2028 to align # Constraint # added constraint: constraint((T0383)V76.CB, (T0383)L98.CB) [> 4.2549 = 7.0915 < 9.2189] w=0.2024 to align # Constraint # added constraint: constraint((T0383)I79.CB, (T0383)V113.CB) [> 3.2629 = 5.4382 < 7.0697] w=0.1962 to align # Constraint # added constraint: constraint((T0383)I79.CB, (T0383)A117.CB) [> 3.0764 = 5.1273 < 6.6656] w=0.1962 to align # Constraint # added constraint: constraint((T0383)V95.CB, (T0383)A117.CB) [> 2.9604 = 4.9340 < 6.4142] w=0.1962 to align # Constraint # added constraint: constraint((T0383)E96.CB, (T0383)I116.CB) [> 3.3916 = 5.6527 < 7.3485] w=0.1962 to align # Constraint # added constraint: constraint((T0383)A99.CB, (T0383)I116.CB) [> 4.4734 = 7.4557 < 9.6924] w=0.1962 to align # Constraint # added constraint: constraint((T0383)A99.CB, (T0383)L118.CB) [> 3.2563 = 5.4271 < 7.0552] w=0.1962 to align # Constraint # added constraint: constraint((T0383)A99.CB, (T0383)D119.CB) [> 4.2031 = 7.0052 < 9.1067] w=0.1962 to align # Constraint # added constraint: constraint((T0383)C102.CB, (T0383)A117.CB) [> 3.8180 = 6.3633 < 8.2723] w=0.1962 to align # Constraint # added constraint: constraint((T0383)M4.CB, (T0383)S70.CB) [> 4.4368 = 7.3947 < 9.6131] w=0.1855 to align # Constraint # added constraint: constraint((T0383)M4.CB, (T0383)G71.CA) [> 3.1553 = 5.2588 < 6.8365] w=0.1855 to align # Constraint # added constraint: constraint((T0383)M4.CB, (T0383)T72.CB) [> 4.3836 = 7.3060 < 9.4978] w=0.1855 to align # Constraint # added constraint: constraint((T0383)F12.CB, (T0383)V76.CB) [> 4.6417 = 7.7361 < 10.0570] w=0.1626 to align # Constraint # added constraint: constraint((T0383)Y16.CB, (T0383)I69.CB) [> 4.6954 = 7.8257 < 10.1734] w=0.1626 to align # Constraint # added constraint: constraint((T0383)Y16.CB, (T0383)L109.CB) [> 3.7014 = 6.1689 < 8.0196] w=0.1626 to align # Constraint # added constraint: constraint((T0383)Y16.CB, (T0383)V113.CB) [> 4.4356 = 7.3927 < 9.6105] w=0.1626 to align # Constraint # added constraint: constraint((T0383)L103.CB, (T0383)A117.CB) [> 3.8586 = 6.4311 < 8.3604] w=0.1352 to align # Constraint # added constraint: constraint((T0383)I55.CB, (T0383)V84.CB) [> 4.4848 = 7.4747 < 9.7171] w=0.1352 to align # Constraint # added constraint: constraint((T0383)P87.CB, (T0383)L98.CB) [> 4.5844 = 7.6407 < 9.9330] w=0.1343 to align # Constraint # added constraint: constraint((T0383)L54.CB, (T0383)H78.CB) [> 4.7709 = 7.9515 < 10.3369] w=0.1322 to align # Constraint # added constraint: constraint((T0383)I116.CB, (T0383)L125.CB) [> 4.0717 = 6.7862 < 8.8220] w=0.1165 to align # Constraint # added constraint: constraint((T0383)L106.CB, (T0383)E115.CB) [> 3.3820 = 5.6367 < 7.3277] w=0.1165 to align # Constraint # added constraint: constraint((T0383)M105.CB, (T0383)T114.CB) [> 3.5279 = 5.8798 < 7.6437] w=0.1165 to align # Constraint # added constraint: constraint((T0383)N104.CB, (T0383)T114.CB) [> 3.5552 = 5.9254 < 7.7030] w=0.1165 to align # Constraint # added constraint: constraint((T0383)V36.CB, (T0383)E126.CB) [> 4.7702 = 7.9504 < 10.3355] w=0.1042 to align # Constraint # added constraint: constraint((T0383)V36.CB, (T0383)I123.CB) [> 4.1615 = 6.9359 < 9.0166] w=0.1042 to align # Constraint # added constraint: constraint((T0383)V36.CB, (T0383)I62.CB) [> 3.0635 = 5.1058 < 6.6375] w=0.1042 to align # Constraint # added constraint: constraint((T0383)V36.CB, (T0383)I57.CB) [> 4.3308 = 7.2181 < 9.3835] w=0.1042 to align # Constraint # added constraint: constraint((T0383)K35.CB, (T0383)E126.CB) [> 4.7810 = 7.9684 < 10.3589] w=0.1042 to align # Constraint # added constraint: constraint((T0383)P32.CB, (T0383)D119.CB) [> 3.6677 = 6.1129 < 7.9468] w=0.1042 to align # Constraint # added constraint: constraint((T0383)P32.CB, (T0383)L118.CB) [> 4.7235 = 7.8726 < 10.2343] w=0.1042 to align # Constraint # added constraint: constraint((T0383)P32.CB, (T0383)V63.CB) [> 2.7293 = 4.5489 < 5.9136] w=0.1042 to align # Constraint # added constraint: constraint((T0383)A31.CB, (T0383)D119.CB) [> 3.6084 = 6.0140 < 7.8182] w=0.1042 to align # Constraint # added constraint: constraint((T0383)A31.CB, (T0383)V63.CB) [> 3.8693 = 6.4488 < 8.3834] w=0.1042 to align # Constraint # added constraint: constraint((T0383)N29.CB, (T0383)D119.CB) [> 3.6568 = 6.0947 < 7.9231] w=0.1042 to align # Constraint # added constraint: constraint((T0383)M4.CB, (T0383)E112.CB) [> 4.3328 = 7.2214 < 9.3878] w=0.1042 to align # Constraint # added constraint: constraint((T0383)D37.CB, (T0383)V63.CB) [> 4.4445 = 7.4075 < 9.6298] w=0.1042 to align # Constraint # added constraint: constraint((T0383)V38.CB, (T0383)L54.CB) [> 4.3973 = 7.3288 < 9.5275] w=0.1042 to align # Constraint # added constraint: constraint((T0383)V38.CB, (T0383)I55.CB) [> 4.5020 = 7.5033 < 9.7543] w=0.1042 to align # Constraint # added constraint: constraint((T0383)V38.CB, (T0383)F60.CB) [> 3.6356 = 6.0593 < 7.8770] w=0.1042 to align # Constraint # added constraint: constraint((T0383)V38.CB, (T0383)L125.CB) [> 4.1359 = 6.8932 < 8.9611] w=0.1042 to align # Constraint # added constraint: constraint((T0383)V38.CB, (T0383)E126.CB) [> 4.7644 = 7.9407 < 10.3229] w=0.1042 to align # Constraint # added constraint: constraint((T0383)N39.CB, (T0383)L54.CB) [> 4.5586 = 7.5977 < 9.8770] w=0.1042 to align # Constraint # added constraint: constraint((T0383)N39.CB, (T0383)F60.CB) [> 4.7674 = 7.9457 < 10.3295] w=0.1042 to align # Constraint # added constraint: constraint((T0383)A3.CB, (T0383)S70.CB) [> 4.4976 = 7.4960 < 9.7448] w=0.0813 to align # Constraint # added constraint: constraint((T0383)A3.CB, (T0383)T72.CB) [> 2.3090 = 3.8484 < 5.0029] w=0.0813 to align # Constraint # added constraint: constraint((T0383)M4.CB, (T0383)D80.CB) [> 3.9499 = 6.5831 < 8.5580] w=0.0813 to align # Constraint # added constraint: constraint((T0383)S53.CB, (T0383)H78.CB) [> 3.4934 = 5.8224 < 7.5691] w=0.0713 to align # Constraint # added constraint: constraint((T0383)R100.CB, (T0383)E112.CB) [> 3.7875 = 6.3125 < 8.2063] w=0.0676 to align # Constraint # added constraint: constraint((T0383)L106.CB, (T0383)L118.CB) [> 4.2363 = 7.0605 < 9.1786] w=0.0676 to align # Constraint # added constraint: constraint((T0383)L106.CB, (T0383)A117.CB) [> 3.2187 = 5.3645 < 6.9739] w=0.0676 to align # Constraint # added constraint: constraint((T0383)I79.CB, (T0383)P101.CB) [> 2.9275 = 4.8792 < 6.3430] w=0.0672 to align # Constraint # added constraint: constraint((T0383)T72.CB, (T0383)L109.CB) [> 3.7552 = 6.2586 < 8.1362] w=0.0432 to align # Constraint # added constraint: constraint((T0383)Q75.CB, (T0383)V84.CB) [> 4.3252 = 7.2087 < 9.3713] w=0.0208 to align # Constraint # added constraint: constraint((T0383)I62.CB, (T0383)V84.CB) [> 3.6663 = 6.1104 < 7.9436] w=0.0104 to align # Constraint # added constraint: constraint((T0383)V63.CB, (T0383)I83.CB) [> 2.2358 = 3.7263 < 4.8442] w=0.0104 to align # Constraint # added constraint: constraint((T0383)F64.CB, (T0383)I83.CB) [> 4.0281 = 6.7135 < 8.7276] w=0.0104 to align # Constraint # added constraint: constraint((T0383)D65.CB, (T0383)I83.CB) [> 3.0436 = 5.0726 < 6.5944] w=0.0104 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0383/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0383/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 19 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain '' from PDB file servers/MIG_FROST_AL1.pdb.gz failed---no such chain. # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 7 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 7 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 3 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 19 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 Skipped atom 462, because occupancy 1 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 464, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 466, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 468, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0383)D80.O and (T0383)G81.N only 0.000 apart, marking (T0383)G81.N as missing WARNING: atoms too close: (T0383)L103.O and (T0383)N104.N only 0.000 apart, marking (T0383)N104.N as missing WARNING: atoms too close: (T0383)N124.O and (T0383)L125.N only 0.000 apart, marking (T0383)L125.N as missing # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0383)L120.O and (T0383)P121.N only 0.000 apart, marking (T0383)P121.N as missing # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0383)R8.O and (T0383)E9.N only 0.000 apart, marking (T0383)E9.N as missing # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 127 in servers/nFOLD_TS1.pdb.gz # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 127 in servers/nFOLD_TS3.pdb.gz # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 127 in servers/nFOLD_TS5.pdb.gz # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0383 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 262 model score 1.0188 model score 1.0287 model score 1.1719 model score 1.0331 model score 1.0116 model score 1.0077 model score 1.0078 model score 1.0068 model score 1.0078 model score 1.0077 model score 2.0222 model score 1.6626 model score 1.0077 model score 1.3989 model score 1.7523 model score 0.7309 model score 0.7288 model score 1.8137 model score 1.9344 model score 1.0106 model score 1.0106 model score 0.9797 model score 1.0001 model score 1.2380 model score 1.1088 model score 1.6096 model score 1.2410 model score 0.8585 model score 1.2385 model score 1.4558 model score 1.5443 model score -0.0402 model score -0.0480 model score -0.0227 model score -0.0336 model score -0.0053 model score 1.1063 model score 1.2727 model score 1.5983 model score 0.8108 model score 1.6133 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.0402 model score -0.0480 model score -0.0734 model score -0.0742 model score 1.0643 model score -0.0612 model score -0.0402 model score -0.0480 model score -0.0480 model score -0.0227 model score 0.7309 model score 0.7288 model score 1.8137 model score 1.9344 model score 0.6976 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.8672 model score 2.0474 model score 1.8483 model score 1.9310 model score 1.8285 model score 2.0739 model score 1.2771 model score 1.5300 model score 1.7126 model score 2.1718 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.0732 model score -0.0334 model score 1.9554 model score 1.6837 model score 1.3401 model score 1.4813 model score 1.2964 model score 1.4813 model score 1.9602 model score 1.8535 model score 2.4631 model score 1.2909 model score 1.2857 model score 1.3636 model score 1.4386 model score 0.0139 model score 0.0139 model score 1.6239 model score 1.6205 model score 1.8920 model score 1.4469 model score 1.9810 model score 1.9440 model score 0.6542 model score 0.6312 model score 0.3470 model score 1.1664 model score 1.0113 model score 2.1146 model score 1.3300 model score 0.4465 model score 1.3894 model score 2.0205 model score 1.6093 model score 0.9642 model score 1.9085 model score 0.4465 model score 1.3894 model score 0.4874 model score 0.7572 model score 0.8355 model score 1.0871 model score 0.8827 model score 1.5804 model score 1.6539 model score 1.9140 model score 2.1022 model score 1.9569 model score 2.0332 model score 1.5065 model score 1.5117 model score 1.4774 model score 1.5110 model score 1.5308 model score 1.5720 model score 1.4569 model score 1.5111 model score 1.4928 model score 1.8354 model score 2.0721 model score 0.7839 model score 1.0194 model score 2.3435 model score 1.0194 model score 1.3952 model score 1.3037 model score 2.0164 model score 1.9937 model score 1.6286 model score 1.8598 model score 0.7839 model score 0.7804 model score 0.7268 model score 1.8038 model score 2.0122 model score -0.0765 model score -0.0463 model score 2.0879 model score 2.3619 model score 0.2454 model score -0.0428 model score -0.0243 model score 1.2904 model score 0.2684 model score 1.2651 model score -0.0784 model score -0.0417 model score 1.4323 model score 0.2626 model score 1.2756 model score 0.7804 model score 0.7268 model score 1.3738 model score 0.7839 model score 1.0160 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.6896 model score -0.1762 model score 1.1912 model score 0.8211 model score 0.9649 model score 1.4679 model score 1.3032 model score 2.1240 model score 1.1529 model score 1.7606 model score 2.1052 model score 1.3151 model score 2.0189 model score 1.7238 model score 0.3248 model score 1.5804 model score 2.0941 model score 1.1799 model score 1.9653 model score 2.0141 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.0765 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.0797 model score -0.0462 model score -0.0169 model score 0.0037 model score -0.0657 model score 1.2210 model score 1.1075 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.8105 model score 1.7382 model score 2.0910 model score 1.5451 model score 1.5099 model score 2.0986 model score 2.0345 model score 2.3371 model score 1.7438 model score 1.7958 model score 1.6597 model score 0.2328 model score 0.1233 model score 1.5401 model score 1.6042 model score 1.4402 model score 1.8844 model score 1.9074 model score 1.6170 model score 1.6170 model score 0.9719 model score 1.5555 model score 1.5918 model score 1.5555 model score 0.9719 model score 1.5535 model score 1.5301 model score 1.1858 weight: 0.5925 eval: 1.0188 min: -0.1762 max: 2.4631 weight: 0.5891 eval: 1.0287 min: -0.1762 max: 2.4631 weight: 0.5403 eval: 1.1719 min: -0.1762 max: 2.4631 weight: 0.5876 eval: 1.0331 min: -0.1762 max: 2.4631 weight: 0.5950 eval: 1.0116 min: -0.1762 max: 2.4631 weight: 0.5963 eval: 1.0077 min: -0.1762 max: 2.4631 weight: 0.5963 eval: 1.0078 min: -0.1762 max: 2.4631 weight: 0.5966 eval: 1.0068 min: -0.1762 max: 2.4631 weight: 0.5963 eval: 1.0078 min: -0.1762 max: 2.4631 weight: 0.5963 eval: 1.0077 min: -0.1762 max: 2.4631 weight: 0.2503 eval: 2.0222 min: -0.1762 max: 2.4631 weight: 0.3730 eval: 1.6626 min: -0.1762 max: 2.4631 weight: 0.5963 eval: 1.0077 min: -0.1762 max: 2.4631 weight: 0.4629 eval: 1.3989 min: -0.1762 max: 2.4631 weight: 0.3424 eval: 1.7523 min: -0.1762 max: 2.4631 weight: 0.6907 eval: 0.7309 min: -0.1762 max: 2.4631 weight: 0.6914 eval: 0.7288 min: -0.1762 max: 2.4631 weight: 0.3214 eval: 1.8137 min: -0.1762 max: 2.4631 weight: 0.2803 eval: 1.9344 min: -0.1762 max: 2.4631 weight: 0.5953 eval: 1.0106 min: -0.1762 max: 2.4631 weight: 0.5953 eval: 1.0106 min: -0.1762 max: 2.4631 weight: 0.6058 eval: 0.9797 min: -0.1762 max: 2.4631 weight: 0.5989 eval: 1.0001 min: -0.1762 max: 2.4631 weight: 0.5178 eval: 1.2380 min: -0.1762 max: 2.4631 weight: 0.5618 eval: 1.1088 min: -0.1762 max: 2.4631 weight: 0.3910 eval: 1.6096 min: -0.1762 max: 2.4631 weight: 0.5167 eval: 1.2410 min: -0.1762 max: 2.4631 weight: 0.6472 eval: 0.8585 min: -0.1762 max: 2.4631 weight: 0.5176 eval: 1.2385 min: -0.1762 max: 2.4631 weight: 0.4435 eval: 1.4558 min: -0.1762 max: 2.4631 weight: 0.4133 eval: 1.5443 min: -0.1762 max: 2.4631 weight: 0.9536 eval: -0.0402 min: -0.1762 max: 2.4631 weight: 0.9563 eval: -0.0480 min: -0.1762 max: 2.4631 weight: 0.9476 eval: -0.0227 min: -0.1762 max: 2.4631 weight: 0.9514 eval: -0.0336 min: -0.1762 max: 2.4631 weight: 0.9417 eval: -0.0053 min: -0.1762 max: 2.4631 weight: 0.5627 eval: 1.1063 min: -0.1762 max: 2.4631 weight: 0.5059 eval: 1.2727 min: -0.1762 max: 2.4631 weight: 0.3949 eval: 1.5983 min: -0.1762 max: 2.4631 weight: 0.6634 eval: 0.8108 min: -0.1762 max: 2.4631 weight: 0.3898 eval: 1.6133 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.9536 eval: -0.0402 min: -0.1762 max: 2.4631 weight: 0.9563 eval: -0.0480 min: -0.1762 max: 2.4631 weight: 0.9649 eval: -0.0734 min: -0.1762 max: 2.4631 weight: 0.9652 eval: -0.0742 min: -0.1762 max: 2.4631 weight: 0.5770 eval: 1.0643 min: -0.1762 max: 2.4631 weight: 0.9608 eval: -0.0612 min: -0.1762 max: 2.4631 weight: 0.9536 eval: -0.0402 min: -0.1762 max: 2.4631 weight: 0.9563 eval: -0.0480 min: -0.1762 max: 2.4631 weight: 0.9563 eval: -0.0480 min: -0.1762 max: 2.4631 weight: 0.9476 eval: -0.0227 min: -0.1762 max: 2.4631 weight: 0.6907 eval: 0.7309 min: -0.1762 max: 2.4631 weight: 0.6914 eval: 0.7288 min: -0.1762 max: 2.4631 weight: 0.3214 eval: 1.8137 min: -0.1762 max: 2.4631 weight: 0.2803 eval: 1.9344 min: -0.1762 max: 2.4631 weight: 0.7020 eval: 0.6976 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.3032 eval: 1.8672 min: -0.1762 max: 2.4631 weight: 0.2418 eval: 2.0474 min: -0.1762 max: 2.4631 weight: 0.3097 eval: 1.8483 min: -0.1762 max: 2.4631 weight: 0.2814 eval: 1.9310 min: -0.1762 max: 2.4631 weight: 0.3164 eval: 1.8285 min: -0.1762 max: 2.4631 weight: 0.2327 eval: 2.0739 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.4182 eval: 1.5300 min: -0.1762 max: 2.4631 weight: 0.3559 eval: 1.7126 min: -0.1762 max: 2.4631 weight: 0.1993 eval: 2.1718 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.9649 eval: -0.0732 min: -0.1762 max: 2.4631 weight: 0.9513 eval: -0.0334 min: -0.1762 max: 2.4631 weight: 0.2731 eval: 1.9554 min: -0.1762 max: 2.4631 weight: 0.3658 eval: 1.6837 min: -0.1762 max: 2.4631 weight: 0.4829 eval: 1.3401 min: -0.1762 max: 2.4631 weight: 0.4348 eval: 1.4813 min: -0.1762 max: 2.4631 weight: 0.4979 eval: 1.2964 min: -0.1762 max: 2.4631 weight: 0.4348 eval: 1.4813 min: -0.1762 max: 2.4631 weight: 0.2715 eval: 1.9602 min: -0.1762 max: 2.4631 weight: 0.3079 eval: 1.8535 min: -0.1762 max: 2.4631 weight: 0.1000 eval: 2.4631 min: -0.1762 max: 2.4631 weight: 0.4997 eval: 1.2909 min: -0.1762 max: 2.4631 weight: 0.5015 eval: 1.2857 min: -0.1762 max: 2.4631 weight: 0.4749 eval: 1.3636 min: -0.1762 max: 2.4631 weight: 0.4493 eval: 1.4386 min: -0.1762 max: 2.4631 weight: 0.9352 eval: 0.0139 min: -0.1762 max: 2.4631 weight: 0.9352 eval: 0.0139 min: -0.1762 max: 2.4631 weight: 0.3862 eval: 1.6239 min: -0.1762 max: 2.4631 weight: 0.3873 eval: 1.6205 min: -0.1762 max: 2.4631 weight: 0.2948 eval: 1.8920 min: -0.1762 max: 2.4631 weight: 0.4465 eval: 1.4469 min: -0.1762 max: 2.4631 weight: 0.2644 eval: 1.9810 min: -0.1762 max: 2.4631 weight: 0.2770 eval: 1.9440 min: -0.1762 max: 2.4631 weight: 0.7168 eval: 0.6542 min: -0.1762 max: 2.4631 weight: 0.7247 eval: 0.6312 min: -0.1762 max: 2.4631 weight: 0.8216 eval: 0.3470 min: -0.1762 max: 2.4631 weight: 0.5422 eval: 1.1664 min: -0.1762 max: 2.4631 weight: 0.5951 eval: 1.0113 min: -0.1762 max: 2.4631 weight: 0.2189 eval: 2.1146 min: -0.1762 max: 2.4631 weight: 0.4864 eval: 1.3300 min: -0.1762 max: 2.4631 weight: 0.7877 eval: 0.4465 min: -0.1762 max: 2.4631 weight: 0.4661 eval: 1.3894 min: -0.1762 max: 2.4631 weight: 0.2509 eval: 2.0205 min: -0.1762 max: 2.4631 weight: 0.3912 eval: 1.6093 min: -0.1762 max: 2.4631 weight: 0.6111 eval: 0.9642 min: -0.1762 max: 2.4631 weight: 0.2891 eval: 1.9085 min: -0.1762 max: 2.4631 weight: 0.7877 eval: 0.4465 min: -0.1762 max: 2.4631 weight: 0.4661 eval: 1.3894 min: -0.1762 max: 2.4631 weight: 0.7737 eval: 0.4874 min: -0.1762 max: 2.4631 weight: 0.6817 eval: 0.7572 min: -0.1762 max: 2.4631 weight: 0.6550 eval: 0.8355 min: -0.1762 max: 2.4631 weight: 0.5692 eval: 1.0871 min: -0.1762 max: 2.4631 weight: 0.6389 eval: 0.8827 min: -0.1762 max: 2.4631 weight: 0.4010 eval: 1.5804 min: -0.1762 max: 2.4631 weight: 0.3759 eval: 1.6539 min: -0.1762 max: 2.4631 weight: 0.2873 eval: 1.9140 min: -0.1762 max: 2.4631 weight: 0.2231 eval: 2.1022 min: -0.1762 max: 2.4631 weight: 0.2726 eval: 1.9569 min: -0.1762 max: 2.4631 weight: 0.2466 eval: 2.0332 min: -0.1762 max: 2.4631 weight: 0.4262 eval: 1.5065 min: -0.1762 max: 2.4631 weight: 0.4244 eval: 1.5117 min: -0.1762 max: 2.4631 weight: 0.4361 eval: 1.4774 min: -0.1762 max: 2.4631 weight: 0.4247 eval: 1.5110 min: -0.1762 max: 2.4631 weight: 0.4179 eval: 1.5308 min: -0.1762 max: 2.4631 weight: 0.4039 eval: 1.5720 min: -0.1762 max: 2.4631 weight: 0.4431 eval: 1.4569 min: -0.1762 max: 2.4631 weight: 0.4246 eval: 1.5111 min: -0.1762 max: 2.4631 weight: 0.4309 eval: 1.4928 min: -0.1762 max: 2.4631 weight: 0.3141 eval: 1.8354 min: -0.1762 max: 2.4631 weight: 0.2333 eval: 2.0721 min: -0.1762 max: 2.4631 weight: 0.6726 eval: 0.7839 min: -0.1762 max: 2.4631 weight: 0.5923 eval: 1.0194 min: -0.1762 max: 2.4631 weight: 0.1408 eval: 2.3435 min: -0.1762 max: 2.4631 weight: 0.5923 eval: 1.0194 min: -0.1762 max: 2.4631 weight: 0.4642 eval: 1.3952 min: -0.1762 max: 2.4631 weight: 0.4953 eval: 1.3037 min: -0.1762 max: 2.4631 weight: 0.2523 eval: 2.0164 min: -0.1762 max: 2.4631 weight: 0.2601 eval: 1.9937 min: -0.1762 max: 2.4631 weight: 0.3846 eval: 1.6286 min: -0.1762 max: 2.4631 weight: 0.3057 eval: 1.8598 min: -0.1762 max: 2.4631 weight: 0.6726 eval: 0.7839 min: -0.1762 max: 2.4631 weight: 0.6738 eval: 0.7804 min: -0.1762 max: 2.4631 weight: 0.6921 eval: 0.7268 min: -0.1762 max: 2.4631 weight: 0.3248 eval: 1.8038 min: -0.1762 max: 2.4631 weight: 0.2538 eval: 2.0122 min: -0.1762 max: 2.4631 weight: 0.9660 eval: -0.0765 min: -0.1762 max: 2.4631 weight: 0.9557 eval: -0.0463 min: -0.1762 max: 2.4631 weight: 0.2279 eval: 2.0879 min: -0.1762 max: 2.4631 weight: 0.1345 eval: 2.3619 min: -0.1762 max: 2.4631 weight: 0.8562 eval: 0.2454 min: -0.1762 max: 2.4631 weight: 0.9545 eval: -0.0428 min: -0.1762 max: 2.4631 weight: 0.9482 eval: -0.0243 min: -0.1762 max: 2.4631 weight: 0.4999 eval: 1.2904 min: -0.1762 max: 2.4631 weight: 0.8484 eval: 0.2684 min: -0.1762 max: 2.4631 weight: 0.5085 eval: 1.2651 min: -0.1762 max: 2.4631 weight: 0.9666 eval: -0.0784 min: -0.1762 max: 2.4631 weight: 0.9541 eval: -0.0417 min: -0.1762 max: 2.4631 weight: 0.4515 eval: 1.4323 min: -0.1762 max: 2.4631 weight: 0.8504 eval: 0.2626 min: -0.1762 max: 2.4631 weight: 0.5049 eval: 1.2756 min: -0.1762 max: 2.4631 weight: 0.6738 eval: 0.7804 min: -0.1762 max: 2.4631 weight: 0.6921 eval: 0.7268 min: -0.1762 max: 2.4631 weight: 0.4714 eval: 1.3738 min: -0.1762 max: 2.4631 weight: 0.6726 eval: 0.7839 min: -0.1762 max: 2.4631 weight: 0.5934 eval: 1.0160 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.7047 eval: 0.6896 min: -0.1762 max: 2.4631 weight: 1.0000 eval: -0.1762 min: -0.1762 max: 2.4631 weight: 0.5337 eval: 1.1912 min: -0.1762 max: 2.4631 weight: 0.6599 eval: 0.8211 min: -0.1762 max: 2.4631 weight: 0.6109 eval: 0.9649 min: -0.1762 max: 2.4631 weight: 0.4394 eval: 1.4679 min: -0.1762 max: 2.4631 weight: 0.4955 eval: 1.3032 min: -0.1762 max: 2.4631 weight: 0.2156 eval: 2.1240 min: -0.1762 max: 2.4631 weight: 0.5468 eval: 1.1529 min: -0.1762 max: 2.4631 weight: 0.3396 eval: 1.7606 min: -0.1762 max: 2.4631 weight: 0.2221 eval: 2.1052 min: -0.1762 max: 2.4631 weight: 0.4915 eval: 1.3151 min: -0.1762 max: 2.4631 weight: 0.2515 eval: 2.0189 min: -0.1762 max: 2.4631 weight: 0.3521 eval: 1.7238 min: -0.1762 max: 2.4631 weight: 0.8292 eval: 0.3248 min: -0.1762 max: 2.4631 weight: 0.4010 eval: 1.5804 min: -0.1762 max: 2.4631 weight: 0.2258 eval: 2.0941 min: -0.1762 max: 2.4631 weight: 0.5376 eval: 1.1799 min: -0.1762 max: 2.4631 weight: 0.2698 eval: 1.9653 min: -0.1762 max: 2.4631 weight: 0.2531 eval: 2.0141 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.9660 eval: -0.0765 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.9671 eval: -0.0797 min: -0.1762 max: 2.4631 weight: 0.9557 eval: -0.0462 min: -0.1762 max: 2.4631 weight: 0.9457 eval: -0.0169 min: -0.1762 max: 2.4631 weight: 0.9386 eval: 0.0037 min: -0.1762 max: 2.4631 weight: 0.9623 eval: -0.0657 min: -0.1762 max: 2.4631 weight: 0.5236 eval: 1.2210 min: -0.1762 max: 2.4631 weight: 0.5622 eval: 1.1075 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.5044 eval: 1.2771 min: -0.1762 max: 2.4631 weight: 0.3225 eval: 1.8105 min: -0.1762 max: 2.4631 weight: 0.3472 eval: 1.7382 min: -0.1762 max: 2.4631 weight: 0.2269 eval: 2.0910 min: -0.1762 max: 2.4631 weight: 0.4130 eval: 1.5451 min: -0.1762 max: 2.4631 weight: 0.4250 eval: 1.5099 min: -0.1762 max: 2.4631 weight: 0.2243 eval: 2.0986 min: -0.1762 max: 2.4631 weight: 0.2462 eval: 2.0345 min: -0.1762 max: 2.4631 weight: 0.1430 eval: 2.3371 min: -0.1762 max: 2.4631 weight: 0.3453 eval: 1.7438 min: -0.1762 max: 2.4631 weight: 0.3276 eval: 1.7958 min: -0.1762 max: 2.4631 weight: 0.3739 eval: 1.6597 min: -0.1762 max: 2.4631 weight: 0.8605 eval: 0.2328 min: -0.1762 max: 2.4631 weight: 0.8979 eval: 0.1233 min: -0.1762 max: 2.4631 weight: 0.4147 eval: 1.5401 min: -0.1762 max: 2.4631 weight: 0.3929 eval: 1.6042 min: -0.1762 max: 2.4631 weight: 0.4488 eval: 1.4402 min: -0.1762 max: 2.4631 weight: 0.2973 eval: 1.8844 min: -0.1762 max: 2.4631 weight: 0.2895 eval: 1.9074 min: -0.1762 max: 2.4631 weight: 0.3885 eval: 1.6170 min: -0.1762 max: 2.4631 weight: 0.3885 eval: 1.6170 min: -0.1762 max: 2.4631 weight: 0.6085 eval: 0.9719 min: -0.1762 max: 2.4631 weight: 0.4095 eval: 1.5555 min: -0.1762 max: 2.4631 weight: 0.3971 eval: 1.5918 min: -0.1762 max: 2.4631 weight: 0.4095 eval: 1.5555 min: -0.1762 max: 2.4631 weight: 0.6085 eval: 0.9719 min: -0.1762 max: 2.4631 weight: 0.4102 eval: 1.5535 min: -0.1762 max: 2.4631 weight: 0.4181 eval: 1.5301 min: -0.1762 max: 2.4631 weight: 0.5356 eval: 1.1858 min: -0.1762 max: 2.4631 Adding 5822 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -227.5540, CN propb: -227.5540 weights: 0.3404 constraints: 381 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 381 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 381 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 5441 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 5441 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 5822 # command: