# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0379/ # command:# Making conformation for sequence T0379 numbered 1 through 208 Created new target T0379 from T0379.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0379/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0379//projects/compbio/experiments/protein-predict/casp7/T0379/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0379//projects/compbio/experiments/protein-predict/casp7/T0379/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0379/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0379/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0379)I170.CB, (T0379)Y188.CB) [> 2.7858 = 4.6430 < 6.0358] w=1.0000 to align # Constraint # added constraint: constraint((T0379)F169.CB, (T0379)T187.CB) [> 3.1257 = 5.2095 < 6.7723] w=1.0000 to align # Constraint # added constraint: constraint((T0379)V12.CB, (T0379)D172.CB) [> 3.0276 = 5.0460 < 6.5598] w=1.0000 to align # Constraint # added constraint: constraint((T0379)V12.CB, (T0379)D171.CB) [> 3.6081 = 6.0134 < 7.8174] w=1.0000 to align # Constraint # added constraint: constraint((T0379)V12.CB, (T0379)I170.CB) [> 3.5918 = 5.9864 < 7.7823] w=1.0000 to align # Constraint # added constraint: constraint((T0379)G11.CA, (T0379)D172.CB) [> 2.8637 = 4.7729 < 6.2047] w=1.0000 to align # Constraint # added constraint: constraint((T0379)V6.CB, (T0379)I170.CB) [> 4.2806 = 7.1343 < 9.2746] w=1.0000 to align # Constraint # added constraint: constraint((T0379)V6.CB, (T0379)F169.CB) [> 2.9061 = 4.8435 < 6.2966] w=1.0000 to align # Constraint # added constraint: constraint((T0379)V6.CB, (T0379)L168.CB) [> 4.1807 = 6.9678 < 9.0581] w=1.0000 to align # Constraint # added constraint: constraint((T0379)I5.CB, (T0379)L168.CB) [> 2.8889 = 4.8148 < 6.2592] w=1.0000 to align # Constraint # added constraint: constraint((T0379)N4.CB, (T0379)L168.CB) [> 4.3535 = 7.2558 < 9.4325] w=1.0000 to align # Constraint # added constraint: constraint((T0379)L168.CB, (T0379)Y188.CB) [> 3.7318 = 6.2196 < 8.0855] w=0.9917 to align # Constraint # added constraint: constraint((T0379)F169.CB, (T0379)Y188.CB) [> 4.1911 = 6.9851 < 9.0806] w=0.9917 to align # Constraint # added constraint: constraint((T0379)D171.CB, (T0379)C189.CB) [> 4.0905 = 6.8175 < 8.8627] w=0.9917 to align # Constraint # added constraint: constraint((T0379)D171.CB, (T0379)P190.CB) [> 4.1292 = 6.8819 < 8.9465] w=0.9917 to align # Constraint # added constraint: constraint((T0379)D172.CB, (T0379)P190.CB) [> 2.9999 = 4.9998 < 6.4998] w=0.9917 to align # Constraint # added constraint: constraint((T0379)D172.CB, (T0379)C189.CB) [> 4.2259 = 7.0431 < 9.1560] w=0.9834 to align # Constraint # added constraint: constraint((T0379)V12.CB, (T0379)P190.CB) [> 3.2597 = 5.4328 < 7.0627] w=0.9834 to align # Constraint # added constraint: constraint((T0379)L168.CB, (T0379)H186.CB) [> 2.7320 = 4.5533 < 5.9193] w=0.9754 to align # Constraint # added constraint: constraint((T0379)I5.CB, (T0379)I170.CB) [> 4.0283 = 6.7138 < 8.7279] w=0.9751 to align # Constraint # added constraint: constraint((T0379)V6.CB, (T0379)T167.CB) [> 3.6689 = 6.1149 < 7.9494] w=0.9729 to align # Constraint # added constraint: constraint((T0379)N4.CB, (T0379)T167.CB) [> 2.8397 = 4.7328 < 6.1527] w=0.9729 to align # Constraint # added constraint: constraint((T0379)N4.CB, (T0379)E166.CB) [> 3.8750 = 6.4583 < 8.3958] w=0.9729 to align # Constraint # added constraint: constraint((T0379)F169.CB, (T0379)H186.CB) [> 4.1439 = 6.9066 < 8.9785] w=0.9670 to align # Constraint # added constraint: constraint((T0379)I170.CB, (T0379)P190.CB) [> 3.4774 = 5.7958 < 7.5345] w=0.9668 to align # Constraint # added constraint: constraint((T0379)F169.CB, (T0379)A180.CB) [> 2.5576 = 4.2627 < 5.5415] w=0.9562 to align # Constraint # added constraint: constraint((T0379)V6.CB, (T0379)M156.CB) [> 3.6806 = 6.1343 < 7.9746] w=0.9562 to align # Constraint # added constraint: constraint((T0379)T167.CB, (T0379)H186.CB) [> 4.1446 = 6.9076 < 8.9799] w=0.9479 to align # Constraint # added constraint: constraint((T0379)N4.CB, (T0379)S160.CB) [> 3.3477 = 5.5795 < 7.2534] w=0.9313 to align # Constraint # added constraint: constraint((T0379)I95.CB, (T0379)L104.CB) [> 3.6386 = 6.0643 < 7.8836] w=0.9252 to align # Constraint # added constraint: constraint((T0379)L13.CB, (T0379)K91.CB) [> 3.1867 = 5.3111 < 6.9044] w=0.9252 to align # Constraint # added constraint: constraint((T0379)V6.CB, (T0379)F105.CB) [> 2.8334 = 4.7223 < 6.1390] w=0.9252 to align # Constraint # added constraint: constraint((T0379)I5.CB, (T0379)L104.CB) [> 3.3596 = 5.5993 < 7.2791] w=0.9252 to align # Constraint # added constraint: constraint((T0379)N4.CB, (T0379)R103.CB) [> 2.6439 = 4.4064 < 5.7284] w=0.9252 to align # Constraint # added constraint: constraint((T0379)G10.CA, (T0379)D172.CB) [> 4.3148 = 7.1913 < 9.3487] w=0.9252 to align # Constraint # added constraint: constraint((T0379)F153.CB, (T0379)L183.CB) [> 2.8775 = 4.7959 < 6.2347] w=0.9230 to align # Constraint # added constraint: constraint((T0379)F153.CB, (T0379)T179.CB) [> 3.5369 = 5.8949 < 7.6634] w=0.9230 to align # Constraint # added constraint: constraint((T0379)I5.CB, (T0379)T167.CB) [> 4.3673 = 7.2789 < 9.4625] w=0.9230 to align # Constraint # added constraint: constraint((T0379)N4.CB, (T0379)F105.CB) [> 3.9088 = 6.5147 < 8.4691] w=0.9169 to align # Constraint # added constraint: constraint((T0379)I5.CB, (T0379)F105.CB) [> 4.3659 = 7.2765 < 9.4594] w=0.9169 to align # Constraint # added constraint: constraint((T0379)I5.CB, (T0379)Y102.CB) [> 3.3837 = 5.6394 < 7.3313] w=0.9169 to align # Constraint # added constraint: constraint((T0379)N4.CB, (T0379)Y102.CB) [> 3.8490 = 6.4149 < 8.3394] w=0.9169 to align # Constraint # added constraint: constraint((T0379)D172.CB, (T0379)D191.CB) [> 4.1233 = 6.8722 < 8.9339] w=0.9089 to align # Constraint # added constraint: constraint((T0379)I5.CB, (T0379)L98.CB) [> 3.5201 = 5.8668 < 7.6269] w=0.9005 to align # Constraint # added constraint: constraint((T0379)I5.CB, (T0379)R103.CB) [> 4.4278 = 7.3797 < 9.5936] w=0.9002 to align # Constraint # added constraint: constraint((T0379)V6.CB, (T0379)L107.CB) [> 3.1351 = 5.2252 < 6.7928] w=0.9002 to align # Constraint # added constraint: constraint((T0379)D171.CB, (T0379)T187.CB) [> 4.4039 = 7.3398 < 9.5418] w=0.9002 to align # Constraint # added constraint: constraint((T0379)N4.CB, (T0379)M162.CB) [> 2.9363 = 4.8938 < 6.3619] w=0.8980 to align # Constraint # added constraint: constraint((T0379)G173.CA, (T0379)C189.CB) [> 4.2978 = 7.1630 < 9.3119] w=0.8836 to align # Constraint # added constraint: constraint((T0379)V6.CB, (T0379)L106.CB) [> 4.3123 = 7.1872 < 9.3434] w=0.8836 to align # Constraint # added constraint: constraint((T0379)I14.CB, (T0379)I87.CB) [> 3.7102 = 6.1837 < 8.0388] w=0.8836 to align # Constraint # added constraint: constraint((T0379)F105.CB, (T0379)M156.CB) [> 3.4951 = 5.8251 < 7.5726] w=0.8814 to align # Constraint # added constraint: constraint((T0379)L13.CB, (T0379)I87.CB) [> 3.9098 = 6.5163 < 8.4711] w=0.8753 to align # Constraint # added constraint: constraint((T0379)G10.CA, (T0379)S108.CB) [> 4.0896 = 6.8159 < 8.8607] w=0.8753 to align # Constraint # added constraint: constraint((T0379)R3.CB, (T0379)E166.CB) [> 2.7173 = 4.5288 < 5.8875] w=0.8648 to align # Constraint # added constraint: constraint((T0379)I157.CB, (T0379)T167.CB) [> 3.7752 = 6.2920 < 8.1796] w=0.8648 to align # Constraint # added constraint: constraint((T0379)L106.CB, (T0379)Y138.CB) [> 4.0014 = 6.6690 < 8.6697] w=0.8504 to align # Constraint # added constraint: constraint((T0379)L107.CB, (T0379)Y138.CB) [> 3.0330 = 5.0550 < 6.5715] w=0.8504 to align # Constraint # added constraint: constraint((T0379)L9.CB, (T0379)S108.CB) [> 2.5339 = 4.2232 < 5.4902] w=0.8503 to align # Constraint # added constraint: constraint((T0379)P164.CB, (T0379)G184.CA) [> 2.9912 = 4.9854 < 6.4810] w=0.8481 to align # Constraint # added constraint: constraint((T0379)L13.CB, (T0379)S88.CB) [> 3.7697 = 6.2829 < 8.1678] w=0.8423 to align # Constraint # added constraint: constraint((T0379)L106.CB, (T0379)V137.CB) [> 2.9247 = 4.8745 < 6.3369] w=0.8421 to align # Constraint # added constraint: constraint((T0379)V177.CB, (T0379)T187.CB) [> 2.9195 = 4.8659 < 6.3257] w=0.8399 to align # Constraint # added constraint: constraint((T0379)K147.CB, (T0379)N176.CB) [> 3.4616 = 5.7693 < 7.5001] w=0.8315 to align # Constraint # added constraint: constraint((T0379)R103.CB, (T0379)S160.CB) [> 3.3674 = 5.6123 < 7.2959] w=0.8315 to align # Constraint # added constraint: constraint((T0379)L107.CB, (T0379)I152.CB) [> 3.5338 = 5.8897 < 7.6566] w=0.8315 to align # Constraint # added constraint: constraint((T0379)L168.CB, (T0379)T187.CB) [> 4.4648 = 7.4413 < 9.6737] w=0.8257 to align # Constraint # added constraint: constraint((T0379)I14.CB, (T0379)E86.CB) [> 4.0132 = 6.6887 < 8.6954] w=0.8254 to align # Constraint # added constraint: constraint((T0379)L9.CB, (T0379)L106.CB) [> 3.5006 = 5.8344 < 7.5847] w=0.8254 to align # Constraint # added constraint: constraint((T0379)N4.CB, (T0379)L104.CB) [> 4.4263 = 7.3771 < 9.5903] w=0.8232 to align # Constraint # added constraint: constraint((T0379)F169.CB, (T0379)F185.CB) [> 2.9736 = 4.9559 < 6.4427] w=0.8174 to align # Constraint # added constraint: constraint((T0379)L168.CB, (T0379)F185.CB) [> 4.0570 = 6.7616 < 8.7901] w=0.8174 to align # Constraint # added constraint: constraint((T0379)F105.CB, (T0379)K136.CB) [> 2.7461 = 4.5769 < 5.9499] w=0.8164 to align # Constraint # added constraint: constraint((T0379)V177.CB, (T0379)C189.CB) [> 3.5066 = 5.8443 < 7.5975] w=0.8149 to align # Constraint # added constraint: constraint((T0379)T167.CB, (T0379)F185.CB) [> 2.8379 = 4.7299 < 6.1488] w=0.8149 to align # Constraint # added constraint: constraint((T0379)R3.CB, (T0379)T167.CB) [> 4.3764 = 7.2940 < 9.4822] w=0.8149 to align # Constraint # added constraint: constraint((T0379)I14.CB, (T0379)A118.CB) [> 3.9082 = 6.5137 < 8.4679] w=0.8088 to align # Constraint # added constraint: constraint((T0379)S108.CB, (T0379)Y138.CB) [> 4.3881 = 7.3135 < 9.5075] w=0.8088 to align # Constraint # added constraint: constraint((T0379)F105.CB, (T0379)V137.CB) [> 4.2785 = 7.1308 < 9.2700] w=0.8088 to align # Constraint # added constraint: constraint((T0379)S108.CB, (T0379)A139.CB) [> 3.4252 = 5.7087 < 7.4213] w=0.8088 to align # Constraint # added constraint: constraint((T0379)F105.CB, (T0379)Y138.CB) [> 3.9874 = 6.6456 < 8.6393] w=0.8005 to align # Constraint # added constraint: constraint((T0379)D8.CB, (T0379)D172.CB) [> 3.7742 = 6.2903 < 8.1774] w=0.8004 to align # Constraint # added constraint: constraint((T0379)D8.CB, (T0379)D171.CB) [> 2.4076 = 4.0126 < 5.2164] w=0.8004 to align # Constraint # added constraint: constraint((T0379)D8.CB, (T0379)I170.CB) [> 3.9653 = 6.6088 < 8.5914] w=0.8004 to align # Constraint # added constraint: constraint((T0379)F7.CB, (T0379)I170.CB) [> 3.1667 = 5.2779 < 6.8613] w=0.8004 to align # Constraint # added constraint: constraint((T0379)D171.CB, (T0379)A180.CB) [> 4.2113 = 7.0189 < 9.1246] w=0.7982 to align # Constraint # added constraint: constraint((T0379)R3.CB, (T0379)R103.CB) [> 4.0043 = 6.6739 < 8.6761] w=0.7899 to align # Constraint # added constraint: constraint((T0379)L106.CB, (T0379)K136.CB) [> 4.2655 = 7.1092 < 9.2419] w=0.7831 to align # Constraint # added constraint: constraint((T0379)R3.CB, (T0379)Y102.CB) [> 3.6819 = 6.1365 < 7.9775] w=0.7816 to align # Constraint # added constraint: constraint((T0379)F105.CB, (T0379)F134.CB) [> 3.6536 = 6.0894 < 7.9162] w=0.7734 to align # Constraint # added constraint: constraint((T0379)P164.CB, (T0379)L183.CB) [> 3.2889 = 5.4815 < 7.1260] w=0.7733 to align # Constraint # added constraint: constraint((T0379)E165.CB, (T0379)G184.CA) [> 3.7596 = 6.2660 < 8.1458] w=0.7733 to align # Constraint # added constraint: constraint((T0379)D8.CB, (T0379)N176.CB) [> 3.5797 = 5.9662 < 7.7560] w=0.7733 to align # Constraint # added constraint: constraint((T0379)H15.CB, (T0379)E86.CB) [> 3.4809 = 5.8015 < 7.5420] w=0.7672 to align # Constraint # added constraint: constraint((T0379)E150.CB, (T0379)L183.CB) [> 3.1325 = 5.2209 < 6.7871] w=0.7650 to align # Constraint # added constraint: constraint((T0379)P148.CB, (T0379)T179.CB) [> 2.7220 = 4.5367 < 5.8977] w=0.7567 to align # Constraint # added constraint: constraint((T0379)K147.CB, (T0379)T179.CB) [> 3.0563 = 5.0938 < 6.6219] w=0.7567 to align # Constraint # added constraint: constraint((T0379)M119.CB, (T0379)L130.CB) [> 3.0472 = 5.0786 < 6.6022] w=0.7491 to align # Constraint # added constraint: constraint((T0379)R103.CB, (T0379)D135.CB) [> 3.0618 = 5.1031 < 6.6340] w=0.7484 to align # Constraint # added constraint: constraint((T0379)I2.CB, (T0379)E166.CB) [> 3.6875 = 6.1458 < 7.9896] w=0.7483 to align # Constraint # added constraint: constraint((T0379)F153.CB, (T0379)F169.CB) [> 4.1953 = 6.9922 < 9.0899] w=0.7483 to align # Constraint # added constraint: constraint((T0379)R3.CB, (T0379)M162.CB) [> 3.2742 = 5.4570 < 7.0941] w=0.7483 to align # Constraint # added constraint: constraint((T0379)N109.CB, (T0379)S140.CB) [> 3.2066 = 5.3443 < 6.9476] w=0.7423 to align # Constraint # added constraint: constraint((T0379)F153.CB, (T0379)A180.CB) [> 3.7481 = 6.2469 < 8.1209] w=0.7401 to align # Constraint # added constraint: constraint((T0379)F105.CB, (T0379)D135.CB) [> 3.6496 = 6.0827 < 7.9075] w=0.7401 to align # Constraint # added constraint: constraint((T0379)S108.CB, (T0379)S140.CB) [> 4.2023 = 7.0038 < 9.1049] w=0.7401 to align # Constraint # added constraint: constraint((T0379)L13.CB, (T0379)L106.CB) [> 4.2293 = 7.0488 < 9.1634] w=0.7340 to align # Constraint # added constraint: constraint((T0379)P148.CB, (T0379)A175.CB) [> 3.2669 = 5.4449 < 7.0783] w=0.7318 to align # Constraint # added constraint: constraint((T0379)L104.CB, (T0379)D135.CB) [> 3.3231 = 5.5384 < 7.2000] w=0.7318 to align # Constraint # added constraint: constraint((T0379)F7.CB, (T0379)F105.CB) [> 4.2785 = 7.1308 < 9.2701] w=0.7256 to align # Constraint # added constraint: constraint((T0379)F7.CB, (T0379)L106.CB) [> 3.2252 = 5.3754 < 6.9880] w=0.7256 to align # Constraint # added constraint: constraint((T0379)D8.CB, (T0379)L107.CB) [> 3.9094 = 6.5156 < 8.4703] w=0.7256 to align # Constraint # added constraint: constraint((T0379)D8.CB, (T0379)S108.CB) [> 3.8082 = 6.3469 < 8.2510] w=0.7256 to align # Constraint # added constraint: constraint((T0379)I5.CB, (T0379)F169.CB) [> 4.6553 = 7.7588 < 10.0864] w=0.7256 to align # Constraint # added constraint: constraint((T0379)P164.CB, (T0379)F185.CB) [> 3.0813 = 5.1356 < 6.6762] w=0.7235 to align # Constraint # added constraint: constraint((T0379)F105.CB, (T0379)S160.CB) [> 3.8218 = 6.3697 < 8.2806] w=0.7234 to align # Constraint # added constraint: constraint((T0379)P148.CB, (T0379)A178.CB) [> 3.1782 = 5.2970 < 6.8861] w=0.7151 to align # Constraint # added constraint: constraint((T0379)L104.CB, (T0379)F134.CB) [> 3.0990 = 5.1649 < 6.7144] w=0.7151 to align # Constraint # added constraint: constraint((T0379)F153.CB, (T0379)F185.CB) [> 3.9628 = 6.6047 < 8.5861] w=0.7068 to align # Constraint # added constraint: constraint((T0379)D8.CB, (T0379)G173.CA) [> 4.4651 = 7.4418 < 9.6743] w=0.7006 to align # Constraint # added constraint: constraint((T0379)R103.CB, (T0379)M162.CB) [> 4.1716 = 6.9526 < 9.0384] w=0.6985 to align # Constraint # added constraint: constraint((T0379)D171.CB, (T0379)Y188.CB) [> 4.6181 = 7.6968 < 10.0058] w=0.6923 to align # Constraint # added constraint: constraint((T0379)I95.CB, (T0379)F133.CB) [> 3.0394 = 5.0656 < 6.5854] w=0.6819 to align # Constraint # added constraint: constraint((T0379)Y138.CB, (T0379)E155.CB) [> 3.5652 = 5.9421 < 7.7247] w=0.6819 to align # Constraint # added constraint: constraint((T0379)F7.CB, (T0379)L104.CB) [> 4.2686 = 7.1144 < 9.2487] w=0.6757 to align # Constraint # added constraint: constraint((T0379)K136.CB, (T0379)D159.CB) [> 3.3297 = 5.5495 < 7.2144] w=0.6736 to align # Constraint # added constraint: constraint((T0379)I170.CB, (T0379)T187.CB) [> 4.5393 = 7.5655 < 9.8351] w=0.6735 to align # Constraint # added constraint: constraint((T0379)I170.CB, (T0379)C189.CB) [> 4.5303 = 7.5505 < 9.8156] w=0.6652 to align # Constraint # added constraint: constraint((T0379)M119.CB, (T0379)D131.CB) [> 3.1956 = 5.3260 < 6.9238] w=0.6577 to align # Constraint # added constraint: constraint((T0379)G11.CA, (T0379)S88.CB) [> 4.2919 = 7.1532 < 9.2992] w=0.6511 to align # Constraint # added constraint: constraint((T0379)V12.CB, (T0379)S88.CB) [> 4.2865 = 7.1442 < 9.2875] w=0.6511 to align # Constraint # added constraint: constraint((T0379)L9.CB, (T0379)L115.CB) [> 3.8797 = 6.4661 < 8.4059] w=0.6508 to align # Constraint # added constraint: constraint((T0379)Y138.CB, (T0379)I152.CB) [> 3.4687 = 5.7811 < 7.5154] w=0.6486 to align # Constraint # added constraint: constraint((T0379)I2.CB, (T0379)L168.CB) [> 3.0533 = 5.0888 < 6.6154] w=0.6486 to align # Constraint # added constraint: constraint((T0379)T110.CB, (T0379)A139.CB) [> 3.3982 = 5.6637 < 7.3628] w=0.6428 to align # Constraint # added constraint: constraint((T0379)M143.CB, (T0379)I152.CB) [> 3.5464 = 5.9107 < 7.6839] w=0.6403 to align # Constraint # added constraint: constraint((T0379)I2.CB, (T0379)H186.CB) [> 4.1365 = 6.8942 < 8.9625] w=0.6403 to align # Constraint # added constraint: constraint((T0379)L107.CB, (T0379)F153.CB) [> 3.8953 = 6.4922 < 8.4399] w=0.6403 to align # Constraint # added constraint: constraint((T0379)P112.CB, (T0379)A139.CB) [> 3.0236 = 5.0393 < 6.5511] w=0.6342 to align # Constraint # added constraint: constraint((T0379)M119.CB, (T0379)V137.CB) [> 3.8329 = 6.3882 < 8.3046] w=0.6259 to align # Constraint # added constraint: constraint((T0379)L107.CB, (T0379)F169.CB) [> 4.4506 = 7.4177 < 9.6431] w=0.6258 to align # Constraint # added constraint: constraint((T0379)F7.CB, (T0379)L107.CB) [> 4.3754 = 7.2924 < 9.4801] w=0.6258 to align # Constraint # added constraint: constraint((T0379)I2.CB, (T0379)Y102.CB) [> 4.0510 = 6.7517 < 8.7772] w=0.6236 to align # Constraint # added constraint: constraint((T0379)V6.CB, (T0379)F185.CB) [> 4.3660 = 7.2767 < 9.4597] w=0.6179 to align # Constraint # added constraint: constraint((T0379)L115.CB, (T0379)V137.CB) [> 3.4841 = 5.8068 < 7.5488] w=0.6175 to align # Constraint # added constraint: constraint((T0379)L115.CB, (T0379)A139.CB) [> 3.3559 = 5.5932 < 7.2712] w=0.6175 to align # Constraint # added constraint: constraint((T0379)L9.CB, (T0379)A118.CB) [> 4.1350 = 6.8917 < 8.9592] w=0.6175 to align # Constraint # added constraint: constraint((T0379)G11.CA, (T0379)P190.CB) [> 4.3951 = 7.3252 < 9.5227] w=0.6175 to align # Constraint # added constraint: constraint((T0379)L104.CB, (T0379)F133.CB) [> 3.7983 = 6.3305 < 8.2297] w=0.6161 to align # Constraint # added constraint: constraint((T0379)S140.CB, (T0379)I152.CB) [> 3.6712 = 6.1186 < 7.9542] w=0.6153 to align # Constraint # added constraint: constraint((T0379)L9.CB, (T0379)T110.CB) [> 3.8347 = 6.3912 < 8.3085] w=0.6070 to align # Constraint # added constraint: constraint((T0379)D8.CB, (T0379)L106.CB) [> 4.4717 = 7.4528 < 9.6886] w=0.6009 to align # Constraint # added constraint: constraint((T0379)N149.CB, (T0379)T179.CB) [> 4.1222 = 6.8704 < 8.9315] w=0.5904 to align # Constraint # added constraint: constraint((T0379)F92.CB, (T0379)L130.CB) [> 4.1248 = 6.8746 < 8.9370] w=0.5821 to align # Constraint # added constraint: constraint((T0379)S120.CB, (T0379)D131.CB) [> 3.1319 = 5.2198 < 6.7857] w=0.5760 to align # Constraint # added constraint: constraint((T0379)F7.CB, (T0379)D171.CB) [> 4.5258 = 7.5429 < 9.8058] w=0.5759 to align # Constraint # added constraint: constraint((T0379)L13.CB, (T0379)L130.CB) [> 4.1632 = 6.9386 < 9.0202] w=0.5738 to align # Constraint # added constraint: constraint((T0379)D96.CB, (T0379)F133.CB) [> 4.0499 = 6.7498 < 8.7748] w=0.5738 to align # Constraint # added constraint: constraint((T0379)P148.CB, (T0379)N176.CB) [> 3.8967 = 6.4944 < 8.4428] w=0.5738 to align # Constraint # added constraint: constraint((T0379)L106.CB, (T0379)M119.CB) [> 4.1664 = 6.9441 < 9.0273] w=0.5676 to align # Constraint # added constraint: constraint((T0379)M156.CB, (T0379)T167.CB) [> 4.3924 = 7.3206 < 9.5168] w=0.5655 to align # Constraint # added constraint: constraint((T0379)F169.CB, (T0379)T179.CB) [> 3.6671 = 6.1118 < 7.9454] w=0.5571 to align # Constraint # added constraint: constraint((T0379)S108.CB, (T0379)V137.CB) [> 4.5125 = 7.5208 < 9.7770] w=0.5510 to align # Constraint # added constraint: constraint((T0379)I87.CB, (T0379)L130.CB) [> 4.0821 = 6.8036 < 8.8446] w=0.5405 to align # Constraint # added constraint: constraint((T0379)N111.CB, (T0379)C141.CB) [> 3.3314 = 5.5524 < 7.2181] w=0.5405 to align # Constraint # added constraint: constraint((T0379)H15.CB, (T0379)I87.CB) [> 4.4766 = 7.4610 < 9.6993] w=0.5344 to align # Constraint # added constraint: constraint((T0379)R103.CB, (T0379)K136.CB) [> 4.5224 = 7.5374 < 9.7986] w=0.5338 to align # Constraint # added constraint: constraint((T0379)M119.CB, (T0379)F134.CB) [> 3.9282 = 6.5471 < 8.5112] w=0.5253 to align # Constraint # added constraint: constraint((T0379)E165.CB, (T0379)F185.CB) [> 4.2938 = 7.1564 < 9.3033] w=0.5239 to align # Constraint # added constraint: constraint((T0379)N111.CB, (T0379)A139.CB) [> 3.4825 = 5.8042 < 7.5454] w=0.5239 to align # Constraint # added constraint: constraint((T0379)D116.CB, (T0379)V137.CB) [> 3.9003 = 6.5006 < 8.4507] w=0.5178 to align # Constraint # added constraint: constraint((T0379)E165.CB, (T0379)H186.CB) [> 4.3741 = 7.2902 < 9.4773] w=0.5073 to align # Constraint # added constraint: constraint((T0379)L106.CB, (T0379)L115.CB) [> 3.7983 = 6.3306 < 8.2297] w=0.5072 to align # Constraint # added constraint: constraint((T0379)R99.CB, (T0379)F133.CB) [> 3.9107 = 6.5178 < 8.4732] w=0.5014 to align # Constraint # added constraint: constraint((T0379)N109.CB, (T0379)A139.CB) [> 4.5022 = 7.5037 < 9.7549] w=0.5011 to align # Constraint # added constraint: constraint((T0379)P148.CB, (T0379)R182.CB) [> 3.9973 = 6.6622 < 8.6609] w=0.4989 to align # Constraint # added constraint: constraint((T0379)I95.CB, (T0379)L130.CB) [> 3.9818 = 6.6363 < 8.6271] w=0.4906 to align # Constraint # added constraint: constraint((T0379)F92.CB, (T0379)F133.CB) [> 4.0207 = 6.7011 < 8.7115] w=0.4823 to align # Constraint # added constraint: constraint((T0379)I157.CB, (T0379)L183.CB) [> 4.3297 = 7.2162 < 9.3811] w=0.4823 to align # Constraint # added constraint: constraint((T0379)N4.CB, (T0379)M156.CB) [> 4.3142 = 7.1904 < 9.3475] w=0.4740 to align # Constraint # added constraint: constraint((T0379)P112.CB, (T0379)C141.CB) [> 3.3455 = 5.5758 < 7.2486] w=0.4740 to align # Constraint # added constraint: constraint((T0379)G10.CA, (T0379)T110.CB) [> 4.2700 = 7.1166 < 9.2516] w=0.4490 to align # Constraint # added constraint: constraint((T0379)T110.CB, (T0379)S140.CB) [> 3.9530 = 6.5883 < 8.5649] w=0.4490 to align # Constraint # added constraint: constraint((T0379)P174.CB, (T0379)C189.CB) [> 3.6168 = 6.0280 < 7.8364] w=0.4429 to align # Constraint # added constraint: constraint((T0379)I87.CB, (T0379)R122.CB) [> 3.4848 = 5.8080 < 7.5504] w=0.4349 to align # Constraint # added constraint: constraint((T0379)V12.CB, (T0379)K91.CB) [> 4.2171 = 7.0284 < 9.1370] w=0.4346 to align # Constraint # added constraint: constraint((T0379)T167.CB, (T0379)L183.CB) [> 3.9340 = 6.5566 < 8.5236] w=0.4323 to align # Constraint # added constraint: constraint((T0379)L104.CB, (T0379)K136.CB) [> 4.5228 = 7.5380 < 9.7994] w=0.4172 to align # Constraint # added constraint: constraint((T0379)F169.CB, (T0379)L183.CB) [> 3.5072 = 5.8454 < 7.5990] w=0.4074 to align # Constraint # added constraint: constraint((T0379)V6.CB, (T0379)L104.CB) [> 4.6481 = 7.7469 < 10.0710] w=0.4016 to align # Constraint # added constraint: constraint((T0379)D8.CB, (T0379)F169.CB) [> 4.5470 = 7.5784 < 9.8519] w=0.4013 to align # Constraint # added constraint: constraint((T0379)D172.CB, (T0379)G193.CA) [> 3.3427 = 5.5712 < 7.2426] w=0.3998 to align # Constraint # added constraint: constraint((T0379)N176.CB, (T0379)T187.CB) [> 4.3375 = 7.2292 < 9.3979] w=0.3908 to align # Constraint # added constraint: constraint((T0379)L81.CB, (T0379)V114.CB) [> 3.8546 = 6.4243 < 8.3516] w=0.3756 to align # Constraint # added constraint: constraint((T0379)T167.CB, (T0379)G184.CA) [> 4.0410 = 6.7350 < 8.7555] w=0.3658 to align # Constraint # added constraint: constraint((T0379)L13.CB, (T0379)I95.CB) [> 4.4383 = 7.3972 < 9.6163] w=0.3597 to align # Constraint # added constraint: constraint((T0379)N176.CB, (T0379)C189.CB) [> 4.4088 = 7.3480 < 9.5524] w=0.3575 to align # Constraint # added constraint: constraint((T0379)V6.CB, (T0379)A180.CB) [> 4.5519 = 7.5865 < 9.8624] w=0.3493 to align # Constraint # added constraint: constraint((T0379)D8.CB, (T0379)P190.CB) [> 4.4687 = 7.4478 < 9.6821] w=0.3265 to align # Constraint # added constraint: constraint((T0379)N111.CB, (T0379)S140.CB) [> 3.5997 = 5.9995 < 7.7993] w=0.3243 to align # Constraint # added constraint: constraint((T0379)L107.CB, (T0379)A139.CB) [> 4.4761 = 7.4602 < 9.6982] w=0.3243 to align # Constraint # added constraint: constraint((T0379)L154.CB, (T0379)P164.CB) [> 3.9811 = 6.6352 < 8.6258] w=0.3242 to align # Constraint # added constraint: constraint((T0379)M1.CB, (T0379)E166.CB) [> 3.8241 = 6.3735 < 8.2856] w=0.3160 to align # Constraint # added constraint: constraint((T0379)L107.CB, (T0379)T179.CB) [> 4.1666 = 6.9444 < 9.0277] w=0.3159 to align # Constraint # added constraint: constraint((T0379)P112.CB, (T0379)V137.CB) [> 3.7258 = 6.2097 < 8.0726] w=0.3077 to align # Constraint # added constraint: constraint((T0379)G11.CA, (T0379)G193.CA) [> 2.9492 = 4.9153 < 6.3899] w=0.2910 to align # Constraint # added constraint: constraint((T0379)F25.CB, (T0379)L37.CB) [> 3.9039 = 6.5066 < 8.4585] w=0.2910 to align # Constraint # added constraint: constraint((T0379)F7.CB, (T0379)I95.CB) [> 4.0845 = 6.8075 < 8.8497] w=0.2849 to align # Constraint # added constraint: constraint((T0379)C189.CB, (T0379)I200.CB) [> 3.7810 = 6.3016 < 8.1921] w=0.2751 to align # Constraint # added constraint: constraint((T0379)S108.CB, (T0379)I152.CB) [> 4.5158 = 7.5263 < 9.7842] w=0.2661 to align # Constraint # added constraint: constraint((T0379)H15.CB, (T0379)G193.CA) [> 4.0119 = 6.6865 < 8.6925] w=0.2661 to align # Constraint # added constraint: constraint((T0379)R18.CB, (T0379)L84.CB) [> 3.9434 = 6.5722 < 8.5439] w=0.2661 to align # Constraint # added constraint: constraint((T0379)L106.CB, (T0379)A139.CB) [> 4.4883 = 7.4805 < 9.7247] w=0.2661 to align # Constraint # added constraint: constraint((T0379)L9.CB, (T0379)L107.CB) [> 4.5303 = 7.5504 < 9.8155] w=0.2661 to align # Constraint # added constraint: constraint((T0379)L107.CB, (T0379)S140.CB) [> 4.4693 = 7.4488 < 9.6835] w=0.2600 to align # Constraint # added constraint: constraint((T0379)V177.CB, (T0379)Y188.CB) [> 4.6002 = 7.6669 < 9.9670] w=0.2578 to align # Constraint # added constraint: constraint((T0379)F7.CB, (T0379)F169.CB) [> 4.5766 = 7.6276 < 9.9159] w=0.2516 to align # Constraint # added constraint: constraint((T0379)I14.CB, (T0379)K91.CB) [> 4.5095 = 7.5158 < 9.7705] w=0.2433 to align # Constraint # added constraint: constraint((T0379)G11.CA, (T0379)N192.CB) [> 3.6701 = 6.1169 < 7.9519] w=0.2428 to align # Constraint # added constraint: constraint((T0379)R99.CB, (T0379)D135.CB) [> 4.4885 = 7.4809 < 9.7251] w=0.2411 to align # Constraint # added constraint: constraint((T0379)L16.CB, (T0379)L84.CB) [> 3.9787 = 6.6312 < 8.6206] w=0.2410 to align # Constraint # added constraint: constraint((T0379)M119.CB, (T0379)F133.CB) [> 4.0701 = 6.7834 < 8.8185] w=0.2351 to align # Constraint # added constraint: constraint((T0379)G11.CA, (T0379)E194.CB) [> 3.9052 = 6.5087 < 8.4613] w=0.2328 to align # Constraint # added constraint: constraint((T0379)K26.CB, (T0379)V76.CB) [> 3.4986 = 5.8310 < 7.5803] w=0.2328 to align # Constraint # added constraint: constraint((T0379)Q142.CB, (T0379)I152.CB) [> 4.2997 = 7.1662 < 9.3160] w=0.2328 to align # Constraint # added constraint: constraint((T0379)I14.CB, (T0379)L84.CB) [> 3.6233 = 6.0388 < 7.8504] w=0.2328 to align # Constraint # added constraint: constraint((T0379)L107.CB, (T0379)D171.CB) [> 4.7048 = 7.8412 < 10.1936] w=0.2267 to align # Constraint # added constraint: constraint((T0379)L13.CB, (T0379)F92.CB) [> 3.9007 = 6.5012 < 8.4515] w=0.2267 to align # Constraint # added constraint: constraint((T0379)Y188.CB, (T0379)L203.CB) [> 3.8815 = 6.4692 < 8.4099] w=0.2252 to align # Constraint # added constraint: constraint((T0379)R3.CB, (T0379)D101.CB) [> 4.2504 = 7.0840 < 9.2092] w=0.2245 to align # Constraint # added constraint: constraint((T0379)I22.CB, (T0379)L80.CB) [> 3.9724 = 6.6206 < 8.6068] w=0.2245 to align # Constraint # added constraint: constraint((T0379)I5.CB, (T0379)I95.CB) [> 4.3171 = 7.1951 < 9.3537] w=0.2245 to align # Constraint # added constraint: constraint((T0379)F7.CB, (T0379)K91.CB) [> 4.2829 = 7.1381 < 9.2795] w=0.2245 to align # Constraint # added constraint: constraint((T0379)V12.CB, (T0379)N176.CB) [> 4.6739 = 7.7899 < 10.1269] w=0.2245 to align # Constraint # added constraint: constraint((T0379)F7.CB, (T0379)F134.CB) [> 4.4659 = 7.4431 < 9.6761] w=0.2162 to align # Constraint # added constraint: constraint((T0379)R24.CB, (T0379)V76.CB) [> 3.7816 = 6.3027 < 8.1935] w=0.2162 to align # Constraint # added constraint: constraint((T0379)R3.CB, (T0379)L168.CB) [> 4.0795 = 6.7991 < 8.8388] w=0.2162 to align # Constraint # added constraint: constraint((T0379)P174.CB, (T0379)W196.CB) [> 3.9160 = 6.5266 < 8.4846] w=0.2162 to align # Constraint # added constraint: constraint((T0379)T110.CB, (T0379)C141.CB) [> 3.5377 = 5.8962 < 7.6650] w=0.2104 to align # Constraint # added constraint: constraint((T0379)L9.CB, (T0379)M119.CB) [> 4.4770 = 7.4617 < 9.7002] w=0.2101 to align # Constraint # added constraint: constraint((T0379)F25.CB, (T0379)E34.CB) [> 4.2008 = 7.0013 < 9.1017] w=0.2079 to align # Constraint # added constraint: constraint((T0379)E20.CB, (T0379)Y77.CB) [> 3.9440 = 6.5733 < 8.5453] w=0.1996 to align # Constraint # added constraint: constraint((T0379)L168.CB, (T0379)A180.CB) [> 4.6527 = 7.7546 < 10.0809] w=0.1996 to align # Constraint # added constraint: constraint((T0379)V12.CB, (T0379)N192.CB) [> 4.0636 = 6.7727 < 8.8045] w=0.1996 to align # Constraint # added constraint: constraint((T0379)V114.CB, (T0379)A139.CB) [> 4.4469 = 7.4115 < 9.6350] w=0.1996 to align # Constraint # added constraint: constraint((T0379)L13.CB, (T0379)A118.CB) [> 3.9928 = 6.6547 < 8.6512] w=0.1996 to align # Constraint # added constraint: constraint((T0379)N109.CB, (T0379)C141.CB) [> 4.2382 = 7.0636 < 9.1827] w=0.1934 to align # Constraint # added constraint: constraint((T0379)N17.CB, (T0379)D172.CB) [> 4.0018 = 6.6696 < 8.6705] w=0.1913 to align # Constraint # added constraint: constraint((T0379)E150.CB, (T0379)E181.CB) [> 3.6063 = 6.0105 < 7.8136] w=0.1912 to align # Constraint # added constraint: constraint((T0379)S21.CB, (T0379)L37.CB) [> 3.3991 = 5.6652 < 7.3647] w=0.1838 to align # Constraint # added constraint: constraint((T0379)S21.CB, (T0379)L41.CB) [> 3.5643 = 5.9406 < 7.7227] w=0.1829 to align # Constraint # added constraint: constraint((T0379)R60.CB, (T0379)Y77.CB) [> 3.6177 = 6.0294 < 7.8382] w=0.1755 to align # Constraint # added constraint: constraint((T0379)F25.CB, (T0379)M36.CB) [> 3.7878 = 6.3129 < 8.2068] w=0.1746 to align # Constraint # added constraint: constraint((T0379)R3.CB, (T0379)K163.CB) [> 4.6396 = 7.7327 < 10.0525] w=0.1746 to align # Constraint # added constraint: constraint((T0379)K91.CB, (T0379)R122.CB) [> 4.2663 = 7.1105 < 9.2436] w=0.1746 to align # Constraint # added constraint: constraint((T0379)V12.CB, (T0379)G193.CA) [> 4.1068 = 6.8447 < 8.8981] w=0.1746 to align # Constraint # added constraint: constraint((T0379)I157.CB, (T0379)E166.CB) [> 4.5650 = 7.6084 < 9.8909] w=0.1746 to align # Constraint # added constraint: constraint((T0379)P174.CB, (T0379)I197.CB) [> 3.7473 = 6.2456 < 8.1192] w=0.1670 to align # Constraint # added constraint: constraint((T0379)L16.CB, (T0379)A118.CB) [> 4.2841 = 7.1402 < 9.2823] w=0.1663 to align # Constraint # added constraint: constraint((T0379)R24.CB, (T0379)L80.CB) [> 4.0175 = 6.6959 < 8.7047] w=0.1663 to align # Constraint # added constraint: constraint((T0379)R60.CB, (T0379)Y73.CB) [> 3.3659 = 5.6099 < 7.2928] w=0.1587 to align # Constraint # added constraint: constraint((T0379)I33.CB, (T0379)F59.CB) [> 3.6374 = 6.0623 < 7.8810] w=0.1587 to align # Constraint # added constraint: constraint((T0379)F169.CB, (T0379)G184.CA) [> 4.5915 = 7.6525 < 9.9482] w=0.1579 to align # Constraint # added constraint: constraint((T0379)L168.CB, (T0379)G184.CA) [> 4.0128 = 6.6880 < 8.6944] w=0.1579 to align # Constraint # added constraint: constraint((T0379)E166.CB, (T0379)G184.CA) [> 4.2260 = 7.0433 < 9.1563] w=0.1579 to align # Constraint # added constraint: constraint((T0379)V6.CB, (T0379)T179.CB) [> 3.8244 = 6.3739 < 8.2861] w=0.1579 to align # Constraint # added constraint: constraint((T0379)G173.CA, (T0379)P190.CB) [> 4.5668 = 7.6113 < 9.8947] w=0.1497 to align # Constraint # added constraint: constraint((T0379)L45.CB, (T0379)A175.CB) [> 3.6685 = 6.1141 < 7.9484] w=0.1497 to align # Constraint # added constraint: constraint((T0379)Y188.CB, (T0379)I200.CB) [> 3.6851 = 6.1418 < 7.9844] w=0.1497 to align # Constraint # added constraint: constraint((T0379)L45.CB, (T0379)N109.CB) [> 3.9307 = 6.5512 < 8.5166] w=0.1414 to align # Constraint # added constraint: constraint((T0379)S21.CB, (T0379)Y40.CB) [> 3.0525 = 5.0874 < 6.6137] w=0.1414 to align # Constraint # added constraint: constraint((T0379)F25.CB, (T0379)Y40.CB) [> 3.6732 = 6.1220 < 7.9585] w=0.1414 to align # Constraint # added constraint: constraint((T0379)E90.CB, (T0379)E194.CB) [> 4.0101 = 6.6835 < 8.6885] w=0.1414 to align # Constraint # added constraint: constraint((T0379)V30.CB, (T0379)Y66.CB) [> 3.2726 = 5.4544 < 7.0907] w=0.1414 to align # Constraint # added constraint: constraint((T0379)F105.CB, (T0379)T167.CB) [> 4.4650 = 7.4417 < 9.6742] w=0.1413 to align # Constraint # added constraint: constraint((T0379)L115.CB, (T0379)Y138.CB) [> 4.4663 = 7.4439 < 9.6770] w=0.1413 to align # Constraint # added constraint: constraint((T0379)G10.CA, (T0379)L84.CB) [> 4.5000 = 7.5000 < 9.7500] w=0.1330 to align # Constraint # added constraint: constraint((T0379)L49.CB, (T0379)Y146.CB) [> 3.6329 = 6.0549 < 7.8713] w=0.1330 to align # Constraint # added constraint: constraint((T0379)Y94.CB, (T0379)T201.CB) [> 3.7078 = 6.1796 < 8.0335] w=0.1330 to align # Constraint # added constraint: constraint((T0379)P112.CB, (T0379)S140.CB) [> 4.2264 = 7.0439 < 9.1571] w=0.1330 to align # Constraint # added constraint: constraint((T0379)S21.CB, (T0379)L80.CB) [> 3.8628 = 6.4379 < 8.3693] w=0.1255 to align # Constraint # added constraint: constraint((T0379)I33.CB, (T0379)E62.CB) [> 3.5944 = 5.9907 < 7.7879] w=0.1255 to align # Constraint # added constraint: constraint((T0379)L80.CB, (T0379)V114.CB) [> 3.8017 = 6.3362 < 8.2371] w=0.1255 to align # Constraint # added constraint: constraint((T0379)I170.CB, (T0379)I200.CB) [> 4.1274 = 6.8790 < 8.9426] w=0.1254 to align # Constraint # added constraint: constraint((T0379)V12.CB, (T0379)G173.CA) [> 4.3474 = 7.2456 < 9.4193] w=0.1247 to align # Constraint # added constraint: constraint((T0379)R3.CB, (T0379)S160.CB) [> 4.5680 = 7.6134 < 9.8974] w=0.1247 to align # Constraint # added constraint: constraint((T0379)G10.CA, (T0379)A118.CB) [> 4.6537 = 7.7562 < 10.0831] w=0.1247 to align # Constraint # added constraint: constraint((T0379)L16.CB, (T0379)G193.CA) [> 3.5378 = 5.8963 < 7.6652] w=0.1247 to align # Constraint # added constraint: constraint((T0379)G10.CA, (T0379)N109.CB) [> 4.4383 = 7.3972 < 9.6163] w=0.1247 to align # Constraint # added constraint: constraint((T0379)G11.CA, (T0379)G173.CA) [> 4.3612 = 7.2687 < 9.4493] w=0.1247 to align # Constraint # added constraint: constraint((T0379)Y94.CB, (T0379)L204.CB) [> 3.7260 = 6.2101 < 8.0731] w=0.1247 to align # Constraint # added constraint: constraint((T0379)M36.CB, (T0379)F59.CB) [> 3.7787 = 6.2978 < 8.1871] w=0.1247 to align # Constraint # added constraint: constraint((T0379)L49.CB, (T0379)K145.CB) [> 3.4606 = 5.7676 < 7.4979] w=0.1247 to align # Constraint # added constraint: constraint((T0379)I28.CB, (T0379)F59.CB) [> 3.8371 = 6.3952 < 8.3137] w=0.1247 to align # Constraint # added constraint: constraint((T0379)I22.CB, (T0379)I33.CB) [> 3.7847 = 6.3079 < 8.2003] w=0.1171 to align # Constraint # added constraint: constraint((T0379)I170.CB, (T0379)W196.CB) [> 3.8413 = 6.4022 < 8.3228] w=0.1164 to align # Constraint # added constraint: constraint((T0379)G10.CA, (T0379)G193.CA) [> 4.5894 = 7.6491 < 9.9438] w=0.1164 to align # Constraint # added constraint: constraint((T0379)Y102.CB, (T0379)L168.CB) [> 4.5656 = 7.6093 < 9.8921] w=0.1164 to align # Constraint # added constraint: constraint((T0379)F25.CB, (T0379)L41.CB) [> 3.7333 = 6.2221 < 8.0887] w=0.1164 to align # Constraint # added constraint: constraint((T0379)Y77.CB, (T0379)Y113.CB) [> 3.9070 = 6.5116 < 8.4651] w=0.1164 to align # Constraint # added constraint: constraint((T0379)G173.CA, (T0379)D191.CB) [> 3.8562 = 6.4269 < 8.3550] w=0.1081 to align # Constraint # added constraint: constraint((T0379)S140.CB, (T0379)N149.CB) [> 4.5569 = 7.5949 < 9.8733] w=0.1081 to align # Constraint # added constraint: constraint((T0379)Y94.CB, (T0379)I197.CB) [> 3.6563 = 6.0938 < 7.9219] w=0.1081 to align # Constraint # added constraint: constraint((T0379)F25.CB, (T0379)L63.CB) [> 3.7723 = 6.2871 < 8.1733] w=0.1081 to align # Constraint # added constraint: constraint((T0379)L49.CB, (T0379)F59.CB) [> 2.5390 = 4.2317 < 5.5012] w=0.1081 to align # Constraint # added constraint: constraint((T0379)F46.CB, (T0379)F59.CB) [> 4.3821 = 7.3035 < 9.4946] w=0.1081 to align # Constraint # added constraint: constraint((T0379)L45.CB, (T0379)P174.CB) [> 3.8273 = 6.3788 < 8.2924] w=0.1081 to align # Constraint # added constraint: constraint((T0379)V6.CB, (T0379)D171.CB) [> 4.7060 = 7.8433 < 10.1963] w=0.1020 to align # Constraint # added constraint: constraint((T0379)S64.CB, (T0379)Y73.CB) [> 3.4536 = 5.7559 < 7.4827] w=0.1006 to align # Constraint # added constraint: constraint((T0379)L98.CB, (T0379)F133.CB) [> 4.5567 = 7.5945 < 9.8729] w=0.0998 to align # Constraint # added constraint: constraint((T0379)E166.CB, (T0379)F185.CB) [> 4.6756 = 7.7927 < 10.1305] w=0.0998 to align # Constraint # added constraint: constraint((T0379)N4.CB, (T0379)D135.CB) [> 4.6962 = 7.8271 < 10.1752] w=0.0998 to align # Constraint # added constraint: constraint((T0379)P174.CB, (T0379)D191.CB) [> 4.3907 = 7.3179 < 9.5133] w=0.0998 to align # Constraint # added constraint: constraint((T0379)D8.CB, (T0379)N109.CB) [> 4.6401 = 7.7336 < 10.0536] w=0.0998 to align # Constraint # added constraint: constraint((T0379)I28.CB, (T0379)L63.CB) [> 4.1675 = 6.9459 < 9.0296] w=0.0998 to align # Constraint # added constraint: constraint((T0379)D48.CB, (T0379)N109.CB) [> 3.5743 = 5.9572 < 7.7444] w=0.0998 to align # Constraint # added constraint: constraint((T0379)I170.CB, (T0379)A180.CB) [> 4.7283 = 7.8804 < 10.2446] w=0.0998 to align # Constraint # added constraint: constraint((T0379)L9.CB, (T0379)A139.CB) [> 4.3512 = 7.2520 < 9.4276] w=0.0998 to align # Constraint # added constraint: constraint((T0379)V12.CB, (T0379)D191.CB) [> 4.1426 = 6.9043 < 8.9756] w=0.0998 to align # Constraint # added constraint: constraint((T0379)G11.CA, (T0379)D191.CB) [> 4.1711 = 6.9519 < 9.0374] w=0.0998 to align # Constraint # added constraint: constraint((T0379)Y188.CB, (T0379)A199.CB) [> 3.4659 = 5.7765 < 7.5094] w=0.0998 to align # Constraint # added constraint: constraint((T0379)L98.CB, (T0379)L204.CB) [> 4.2057 = 7.0095 < 9.1124] w=0.0923 to align # Constraint # added constraint: constraint((T0379)H15.CB, (T0379)N192.CB) [> 4.0297 = 6.7162 < 8.7310] w=0.0915 to align # Constraint # added constraint: constraint((T0379)R3.CB, (T0379)E165.CB) [> 3.9527 = 6.5878 < 8.5642] w=0.0915 to align # Constraint # added constraint: constraint((T0379)P190.CB, (T0379)L203.CB) [> 3.6542 = 6.0903 < 7.9174] w=0.0915 to align # Constraint # added constraint: constraint((T0379)L49.CB, (T0379)G144.CA) [> 3.2120 = 5.3533 < 6.9593] w=0.0915 to align # Constraint # added constraint: constraint((T0379)C189.CB, (T0379)T201.CB) [> 3.6194 = 6.0323 < 7.8420] w=0.0915 to align # Constraint # added constraint: constraint((T0379)L107.CB, (T0379)F134.CB) [> 2.8196 = 4.6993 < 6.1091] w=0.0915 to align # Constraint # added constraint: constraint((T0379)D172.CB, (T0379)I197.CB) [> 4.1788 = 6.9646 < 9.0540] w=0.0914 to align # Constraint # added constraint: constraint((T0379)I5.CB, (T0379)L204.CB) [> 4.1026 = 6.8377 < 8.8890] w=0.0839 to align # Constraint # added constraint: constraint((T0379)P121.CB, (T0379)S132.CB) [> 4.2286 = 7.0477 < 9.1621] w=0.0832 to align # Constraint # added constraint: constraint((T0379)R24.CB, (T0379)L49.CB) [> 4.1105 = 6.8508 < 8.9060] w=0.0832 to align # Constraint # added constraint: constraint((T0379)E56.CB, (T0379)Y66.CB) [> 3.8221 = 6.3702 < 8.2813] w=0.0832 to align # Constraint # added constraint: constraint((T0379)V12.CB, (T0379)E194.CB) [> 4.5041 = 7.5068 < 9.7589] w=0.0832 to align # Constraint # added constraint: constraint((T0379)E166.CB, (T0379)H186.CB) [> 4.3016 = 7.1694 < 9.3202] w=0.0832 to align # Constraint # added constraint: constraint((T0379)I28.CB, (T0379)I67.CB) [> 3.8474 = 6.4124 < 8.3361] w=0.0832 to align # Constraint # added constraint: constraint((T0379)R18.CB, (T0379)T110.CB) [> 2.8171 = 4.6952 < 6.1038] w=0.0832 to align # Constraint # added constraint: constraint((T0379)I5.CB, (T0379)I200.CB) [> 4.3236 = 7.2059 < 9.3677] w=0.0831 to align # Constraint # added constraint: constraint((T0379)F46.CB, (T0379)P174.CB) [> 3.8768 = 6.4613 < 8.3997] w=0.0756 to align # Constraint # added constraint: constraint((T0379)M1.CB, (T0379)E165.CB) [> 4.1228 = 6.8714 < 8.9328] w=0.0748 to align # Constraint # added constraint: constraint((T0379)I28.CB, (T0379)V76.CB) [> 4.2192 = 7.0320 < 9.1416] w=0.0748 to align # Constraint # added constraint: constraint((T0379)L9.CB, (T0379)N109.CB) [> 4.7310 = 7.8849 < 10.2504] w=0.0748 to align # Constraint # added constraint: constraint((T0379)E50.CB, (T0379)S140.CB) [> 3.0974 = 5.1624 < 6.7111] w=0.0748 to align # Constraint # added constraint: constraint((T0379)L107.CB, (T0379)K136.CB) [> 4.4697 = 7.4495 < 9.6843] w=0.0748 to align # Constraint # added constraint: constraint((T0379)H186.CB, (T0379)L203.CB) [> 4.0048 = 6.6747 < 8.6771] w=0.0748 to align # Constraint # added constraint: constraint((T0379)L115.CB, (T0379)S140.CB) [> 4.0575 = 6.7625 < 8.7912] w=0.0748 to align # Constraint # added constraint: constraint((T0379)N109.CB, (T0379)M143.CB) [> 3.9970 = 6.6617 < 8.6602] w=0.0687 to align # Constraint # added constraint: constraint((T0379)G173.CA, (T0379)N192.CB) [> 3.6286 = 6.0477 < 7.8621] w=0.0682 to align # Constraint # added constraint: constraint((T0379)E50.CB, (T0379)N109.CB) [> 2.8773 = 4.7955 < 6.2341] w=0.0665 to align # Constraint # added constraint: constraint((T0379)F46.CB, (T0379)K147.CB) [> 3.9526 = 6.5877 < 8.5641] w=0.0665 to align # Constraint # added constraint: constraint((T0379)N109.CB, (T0379)K145.CB) [> 4.2095 = 7.0159 < 9.1207] w=0.0665 to align # Constraint # added constraint: constraint((T0379)R3.CB, (T0379)L98.CB) [> 4.5776 = 7.6293 < 9.9181] w=0.0665 to align # Constraint # added constraint: constraint((T0379)L107.CB, (T0379)M143.CB) [> 3.6119 = 6.0198 < 7.8257] w=0.0604 to align # Constraint # added constraint: constraint((T0379)F83.CB, (T0379)L117.CB) [> 2.7604 = 4.6007 < 5.9809] w=0.0589 to align # Constraint # added constraint: constraint((T0379)F46.CB, (T0379)N109.CB) [> 3.8222 = 6.3704 < 8.2815] w=0.0582 to align # Constraint # added constraint: constraint((T0379)P190.CB, (T0379)I200.CB) [> 3.7811 = 6.3019 < 8.1924] w=0.0582 to align # Constraint # added constraint: constraint((T0379)P190.CB, (T0379)L204.CB) [> 4.0204 = 6.7007 < 8.7109] w=0.0582 to align # Constraint # added constraint: constraint((T0379)C189.CB, (T0379)L204.CB) [> 2.9829 = 4.9715 < 6.4629] w=0.0582 to align # Constraint # added constraint: constraint((T0379)L106.CB, (T0379)D135.CB) [> 4.1598 = 6.9331 < 9.0130] w=0.0582 to align # Constraint # added constraint: constraint((T0379)D151.CB, (T0379)R182.CB) [> 4.6034 = 7.6723 < 9.9740] w=0.0582 to align # Constraint # added constraint: constraint((T0379)F83.CB, (T0379)P121.CB) [> 4.1216 = 6.8694 < 8.9302] w=0.0507 to align # Constraint # added constraint: constraint((T0379)I2.CB, (T0379)E165.CB) [> 4.7035 = 7.8392 < 10.1910] w=0.0499 to align # Constraint # added constraint: constraint((T0379)M156.CB, (T0379)F169.CB) [> 4.6859 = 7.8099 < 10.1529] w=0.0499 to align # Constraint # added constraint: constraint((T0379)L41.CB, (T0379)Y146.CB) [> 3.9032 = 6.5053 < 8.4569] w=0.0499 to align # Constraint # added constraint: constraint((T0379)A118.CB, (T0379)T129.CB) [> 3.6479 = 6.0798 < 7.9037] w=0.0499 to align # Constraint # added constraint: constraint((T0379)V30.CB, (T0379)A79.CB) [> 3.5306 = 5.8843 < 7.6496] w=0.0499 to align # Constraint # added constraint: constraint((T0379)L80.CB, (T0379)L117.CB) [> 3.9107 = 6.5178 < 8.4732] w=0.0499 to align # Constraint # added constraint: constraint((T0379)L104.CB, (T0379)F123.CB) [> 4.0241 = 6.7068 < 8.7188] w=0.0499 to align # Constraint # added constraint: constraint((T0379)D171.CB, (T0379)N192.CB) [> 4.4990 = 7.4983 < 9.7477] w=0.0499 to align # Constraint # added constraint: constraint((T0379)Y188.CB, (T0379)L204.CB) [> 4.0350 = 6.7249 < 8.7424] w=0.0499 to align # Constraint # added constraint: constraint((T0379)Y40.CB, (T0379)I67.CB) [> 4.0595 = 6.7658 < 8.7956] w=0.0416 to align # Constraint # added constraint: constraint((T0379)S64.CB, (T0379)V76.CB) [> 3.7684 = 6.2807 < 8.1649] w=0.0416 to align # Constraint # added constraint: constraint((T0379)D191.CB, (T0379)T201.CB) [> 3.3922 = 5.6536 < 7.3497] w=0.0416 to align # Constraint # added constraint: constraint((T0379)G11.CA, (T0379)I22.CB) [> 4.1803 = 6.9671 < 9.0572] w=0.0416 to align # Constraint # added constraint: constraint((T0379)S108.CB, (T0379)M143.CB) [> 4.0091 = 6.6818 < 8.6863] w=0.0416 to align # Constraint # added constraint: constraint((T0379)C189.CB, (T0379)R205.CB) [> 3.0763 = 5.1272 < 6.6654] w=0.0416 to align # Constraint # added constraint: constraint((T0379)L13.CB, (T0379)Y94.CB) [> 4.4783 = 7.4638 < 9.7030] w=0.0416 to align # Constraint # added constraint: constraint((T0379)N111.CB, (T0379)Y138.CB) [> 2.9655 = 4.9426 < 6.4253] w=0.0416 to align # Constraint # added constraint: constraint((T0379)Y113.CB, (T0379)Y138.CB) [> 3.3349 = 5.5581 < 7.2256] w=0.0416 to align # Constraint # added constraint: constraint((T0379)N109.CB, (T0379)Q142.CB) [> 3.0809 = 5.1349 < 6.6754] w=0.0357 to align # Constraint # added constraint: constraint((T0379)L115.CB, (T0379)C141.CB) [> 4.1321 = 6.8868 < 8.9529] w=0.0333 to align # Constraint # added constraint: constraint((T0379)D32.CB, (T0379)F46.CB) [> 3.6842 = 6.1403 < 7.9823] w=0.0333 to align # Constraint # added constraint: constraint((T0379)F46.CB, (T0379)N111.CB) [> 3.8420 = 6.4033 < 8.3243] w=0.0333 to align # Constraint # added constraint: constraint((T0379)F7.CB, (T0379)Y94.CB) [> 4.6842 = 7.8070 < 10.1491] w=0.0333 to align # Constraint # added constraint: constraint((T0379)Y188.CB, (T0379)I197.CB) [> 3.6975 = 6.1625 < 8.0113] w=0.0333 to align # Constraint # added constraint: constraint((T0379)F7.CB, (T0379)I33.CB) [> 4.4313 = 7.3855 < 9.6012] w=0.0333 to align # Constraint # added constraint: constraint((T0379)N4.CB, (T0379)D32.CB) [> 4.1373 = 6.8955 < 8.9641] w=0.0333 to align # Constraint # added constraint: constraint((T0379)R3.CB, (T0379)V30.CB) [> 3.8767 = 6.4611 < 8.3994] w=0.0333 to align # Constraint # added constraint: constraint((T0379)L104.CB, (T0379)R122.CB) [> 4.4418 = 7.4030 < 9.6239] w=0.0333 to align # Constraint # added constraint: constraint((T0379)T187.CB, (T0379)L203.CB) [> 3.5798 = 5.9663 < 7.7562] w=0.0333 to align # Constraint # added constraint: constraint((T0379)L47.CB, (T0379)V177.CB) [> 4.4041 = 7.3402 < 9.5423] w=0.0333 to align # Constraint # added constraint: constraint((T0379)G193.CA, (T0379)R205.CB) [> 3.4893 = 5.8155 < 7.5602] w=0.0333 to align # Constraint # added constraint: constraint((T0379)L104.CB, (T0379)S132.CB) [> 4.6348 = 7.7247 < 10.0421] w=0.0333 to align # Constraint # added constraint: constraint((T0379)Y188.CB, (T0379)R202.CB) [> 3.6818 = 6.1364 < 7.9773] w=0.0332 to align # Constraint # added constraint: constraint((T0379)R3.CB, (T0379)I33.CB) [> 3.8798 = 6.4663 < 8.4061] w=0.0332 to align # Constraint # added constraint: constraint((T0379)V6.CB, (T0379)M143.CB) [> 4.1299 = 6.8832 < 8.9481] w=0.0271 to align # Constraint # added constraint: constraint((T0379)M143.CB, (T0379)F169.CB) [> 3.7602 = 6.2670 < 8.1470] w=0.0271 to align # Constraint # added constraint: constraint((T0379)N192.CB, (T0379)T201.CB) [> 3.4548 = 5.7581 < 7.4855] w=0.0249 to align # Constraint # added constraint: constraint((T0379)L13.CB, (T0379)S108.CB) [> 4.7819 = 7.9698 < 10.3608] w=0.0249 to align # Constraint # added constraint: constraint((T0379)V114.CB, (T0379)C141.CB) [> 4.7489 = 7.9149 < 10.2893] w=0.0249 to align # Constraint # added constraint: constraint((T0379)A178.CB, (T0379)T187.CB) [> 4.7521 = 7.9202 < 10.2963] w=0.0249 to align # Constraint # added constraint: constraint((T0379)L16.CB, (T0379)L37.CB) [> 4.6197 = 7.6995 < 10.0094] w=0.0249 to align # Constraint # added constraint: constraint((T0379)V177.CB, (T0379)G193.CA) [> 3.5982 = 5.9970 < 7.7961] w=0.0249 to align # Constraint # added constraint: constraint((T0379)V177.CB, (T0379)D191.CB) [> 3.8763 = 6.4606 < 8.3988] w=0.0249 to align # Constraint # added constraint: constraint((T0379)L13.CB, (T0379)L124.CB) [> 4.1905 = 6.9842 < 9.0795] w=0.0249 to align # Constraint # added constraint: constraint((T0379)I14.CB, (T0379)L124.CB) [> 3.6084 = 6.0140 < 7.8182] w=0.0249 to align # Constraint # added constraint: constraint((T0379)V6.CB, (T0379)D32.CB) [> 4.3386 = 7.2309 < 9.4002] w=0.0249 to align # Constraint # added constraint: constraint((T0379)L13.CB, (T0379)L63.CB) [> 4.6370 = 7.7284 < 10.0469] w=0.0249 to align # Constraint # added constraint: constraint((T0379)I67.CB, (T0379)V76.CB) [> 4.0719 = 6.7866 < 8.8225] w=0.0249 to align # Constraint # added constraint: constraint((T0379)N109.CB, (T0379)N149.CB) [> 3.9365 = 6.5608 < 8.5290] w=0.0249 to align # Constraint # added constraint: constraint((T0379)A180.CB, (T0379)C189.CB) [> 4.4141 = 7.3568 < 9.5639] w=0.0249 to align # Constraint # added constraint: constraint((T0379)T187.CB, (T0379)I200.CB) [> 3.1518 = 5.2529 < 6.8288] w=0.0249 to align # Constraint # added constraint: constraint((T0379)S97.CB, (T0379)C141.CB) [> 4.7684 = 7.9473 < 10.3315] w=0.0166 to align # Constraint # added constraint: constraint((T0379)T110.CB, (T0379)F134.CB) [> 4.7822 = 7.9704 < 10.3615] w=0.0166 to align # Constraint # added constraint: constraint((T0379)Y73.CB, (T0379)M143.CB) [> 2.8314 = 4.7189 < 6.1346] w=0.0166 to align # Constraint # added constraint: constraint((T0379)M1.CB, (T0379)L204.CB) [> 4.1567 = 6.9278 < 9.0061] w=0.0166 to align # Constraint # added constraint: constraint((T0379)L47.CB, (T0379)C141.CB) [> 4.3283 = 7.2139 < 9.3780] w=0.0166 to align # Constraint # added constraint: constraint((T0379)M1.CB, (T0379)Y102.CB) [> 4.5336 = 7.5560 < 9.8228] w=0.0166 to align # Constraint # added constraint: constraint((T0379)I14.CB, (T0379)L117.CB) [> 3.9825 = 6.6374 < 8.6286] w=0.0166 to align # Constraint # added constraint: constraint((T0379)S64.CB, (T0379)T110.CB) [> 3.0007 = 5.0012 < 6.5015] w=0.0166 to align # Constraint # added constraint: constraint((T0379)L47.CB, (T0379)Q75.CB) [> 3.7372 = 6.2287 < 8.0973] w=0.0166 to align # Constraint # added constraint: constraint((T0379)V76.CB, (T0379)S108.CB) [> 4.3465 = 7.2442 < 9.4175] w=0.0166 to align # Constraint # added constraint: constraint((T0379)S108.CB, (T0379)C141.CB) [> 4.3420 = 7.2367 < 9.4077] w=0.0166 to align # Constraint # added constraint: constraint((T0379)L63.CB, (T0379)Q75.CB) [> 4.4041 = 7.3401 < 9.5421] w=0.0090 to align # Constraint # added constraint: constraint((T0379)N17.CB, (T0379)A79.CB) [> 3.7266 = 6.2109 < 8.0742] w=0.0083 to align # Constraint # added constraint: constraint((T0379)F46.CB, (T0379)F83.CB) [> 3.3039 = 5.5065 < 7.1584] w=0.0083 to align # Constraint # added constraint: constraint((T0379)Y146.CB, (T0379)V177.CB) [> 4.5560 = 7.5933 < 9.8713] w=0.0083 to align # Constraint # added constraint: constraint((T0379)F105.CB, (T0379)C141.CB) [> 4.6162 = 7.6937 < 10.0018] w=0.0083 to align # Constraint # added constraint: constraint((T0379)L98.CB, (T0379)G144.CA) [> 4.7521 = 7.9202 < 10.2962] w=0.0083 to align # Constraint # added constraint: constraint((T0379)H15.CB, (T0379)F83.CB) [> 3.5533 = 5.9222 < 7.6988] w=0.0083 to align # Constraint # added constraint: constraint((T0379)V12.CB, (T0379)T201.CB) [> 4.7421 = 7.9035 < 10.2746] w=0.0083 to align # Constraint # added constraint: constraint((T0379)I2.CB, (T0379)T187.CB) [> 4.5741 = 7.6234 < 9.9105] w=0.0083 to align # Constraint # added constraint: constraint((T0379)M1.CB, (T0379)H186.CB) [> 4.7609 = 7.9348 < 10.3152] w=0.0083 to align # Constraint # added constraint: constraint((T0379)F169.CB, (T0379)C189.CB) [> 4.1435 = 6.9059 < 8.9776] w=0.0083 to align # Constraint # added constraint: constraint((T0379)S108.CB, (T0379)L124.CB) [> 4.7275 = 7.8792 < 10.2430] w=0.0083 to align # Constraint # added constraint: constraint((T0379)L63.CB, (T0379)L106.CB) [> 4.2594 = 7.0990 < 9.2288] w=0.0083 to align # Constraint # added constraint: constraint((T0379)L13.CB, (T0379)I67.CB) [> 4.3510 = 7.2516 < 9.4271] w=0.0083 to align # Constraint # added constraint: constraint((T0379)G173.CA, (T0379)Y188.CB) [> 4.7601 = 7.9335 < 10.3135] w=0.0083 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0379/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0379/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 Skipped atom 11, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 304, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 Skipped atom 806, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 808, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 810, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 812, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 Skipped atom 34, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 36, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 98, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 100, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 104, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 190, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 192, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 246, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 248, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 250, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 252, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 486, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 488, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 490, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 492, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 Skipped atom 11, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 304, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 Skipped atom 34, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 36, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 38, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 40, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 98, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 100, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 104, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 190, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 192, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 246, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 248, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 250, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 252, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 486, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 488, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 490, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 492, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 174 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 2 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 Skipped atom 310, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 312, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 314, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 316, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 362, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 364, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 366, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 368, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 382, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 384, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 386, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 388, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 396, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 666, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 668, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 670, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 672, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 Skipped atom 766, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 768, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 770, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 772, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 774, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 776, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 778, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 780, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0379)E57.O and (T0379)E58.N only 0.000 apart, marking (T0379)E58.N as missing WARNING: atoms too close: (T0379)M119.O and (T0379)S120.N only 0.000 apart, marking (T0379)S120.N as missing # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0379)E86.O and (T0379)I87.N only 0.000 apart, marking (T0379)I87.N as missing # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0379)E86.O and (T0379)I87.N only 0.000 apart, marking (T0379)I87.N as missing # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0379)N149.O and (T0379)E150.N only 0.000 apart, marking (T0379)E150.N as missing # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0379)E86.N and (T0379)N111.N only 0.000 apart, marking (T0379)N111.N as missing WARNING: atoms too close: (T0379)E86.CA and (T0379)N111.CA only 0.000 apart, marking (T0379)N111.CA as missing WARNING: atoms too close: (T0379)E86.CB and (T0379)N111.CB only 0.000 apart, marking (T0379)N111.CB as missing WARNING: atoms too close: (T0379)E86.CG and (T0379)N111.CG only 0.000 apart, marking (T0379)N111.CG as missing WARNING: atoms too close: (T0379)E86.O and (T0379)N111.O only 0.000 apart, marking (T0379)N111.O as missing WARNING: atoms too close: (T0379)E86.C and (T0379)N111.C only 0.000 apart, marking (T0379)N111.C as missing WARNING: atoms too close: (T0379)N111.N and (T0379)P112.N only 0.000 apart, marking (T0379)N111.N as missing WARNING: atoms too close: (T0379)E86.N and (T0379)P112.N only 0.000 apart, marking (T0379)P112.N as missing WARNING: atoms too close: (T0379)N111.CA and (T0379)P112.CA only 0.000 apart, marking (T0379)P112.CA as missing WARNING: atoms too close: (T0379)E86.CA and (T0379)P112.CA only 0.000 apart, marking (T0379)P112.CA as missing WARNING: atoms too close: (T0379)N111.CB and (T0379)P112.CB only 0.000 apart, marking (T0379)P112.CB as missing WARNING: atoms too close: (T0379)E86.CB and (T0379)P112.CB only 0.000 apart, marking (T0379)P112.CB as missing WARNING: atoms too close: (T0379)N111.O and (T0379)P112.O only 0.000 apart, marking (T0379)P112.O as missing WARNING: atoms too close: (T0379)E86.O and (T0379)P112.O only 0.000 apart, marking (T0379)P112.O as missing WARNING: atoms too close: (T0379)N111.C and (T0379)P112.C only 0.000 apart, marking (T0379)P112.C as missing WARNING: atoms too close: (T0379)E86.C and (T0379)P112.C only 0.000 apart, marking (T0379)P112.C as missing # WARNING: incomplete conformation T0379 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 262 model score -0.2069 model score -0.0401 model score -0.0407 model score -0.1814 model score -0.1045 model score -0.2912 model score -0.2840 model score -0.2133 model score -0.2633 model score -0.2015 model score -0.0434 model score -0.2513 model score -0.2715 model score -0.2343 model score -0.2409 model score -0.2973 model score -0.2967 model score -0.2672 model score -0.2838 model score -0.2732 model score 1.4599 model score 1.6462 model score 1.8785 model score 1.5746 model score 1.6407 model score -0.5151 model score -0.3170 model score -0.1071 model score -0.4228 model score -0.4329 model score -0.4225 model score -0.4094 model score -0.3838 model score -0.3776 model score -0.3035 model score -0.3011 model score 0.3482 model score -0.3627 model score -0.4132 model score 0.0057 model score -0.3067 model score -0.4866 model score 1.2764 model score 1.2779 model score 1.2764 model score 1.2769 model score 1.2774 model score -0.2987 model score -0.2869 model score -0.3014 model score -0.0948 model score -0.2408 model score -0.3144 model score -0.3035 model score -0.3011 model score -0.4094 model score -0.3776 model score -0.2842 model score -0.2859 model score -0.2546 model score -0.2331 model score -0.2278 model score 1.2763 model score 1.2765 model score 1.2765 model score 1.2754 model score 1.2753 model score 1.2765 model score 1.2763 model score 1.2753 model score 1.2754 model score 1.2711 model score 2.0852 model score 2.5850 model score 2.4604 model score 2.0833 model score 2.3324 model score -0.3234 model score -0.2373 model score -0.4860 model score -0.4494 model score -0.1219 model score 1.2751 model score 1.2783 model score 1.2763 model score 1.2711 model score 1.2775 model score -0.2343 model score -0.0326 model score -0.2178 model score -0.0205 model score -0.2286 model score 0.5426 model score 2.2862 model score 2.4288 model score 0.9229 model score 0.8157 model score -0.3063 model score -0.3055 model score -0.3564 model score -0.3680 model score -0.3451 model score -0.5603 model score -0.5106 model score -0.1300 model score -0.0294 model score -0.3751 model score -0.3165 model score -0.3513 model score -0.2360 model score -0.0668 model score -0.3421 model score -0.3901 model score -0.3861 model score 1.2771 model score -0.3498 model score -0.3659 model score -0.2417 model score -0.3626 model score -0.4640 model score -0.3311 model score -0.2417 model score -0.4785 model score -0.4135 model score -0.4297 model score -0.5534 model score -0.5441 model score -0.5435 model score -0.5282 model score -0.4535 model score -0.2360 model score -0.3429 model score -0.3489 model score -0.3591 model score -0.3469 model score -0.3017 model score -0.3442 model score -0.4823 model score -0.4732 model score -0.3017 model score -0.3195 model score -0.3464 model score -0.3825 model score -0.0952 model score -0.5096 model score 0.2870 model score -0.3070 model score -0.3943 model score -0.4999 model score -0.4679 model score -0.4476 model score -0.3361 model score -0.3743 model score -0.3524 model score -0.3694 model score -0.3578 model score -0.4632 model score -0.3188 model score -0.3129 model score -0.3711 model score -0.3629 model score -0.2623 model score -0.4257 model score -0.2260 model score -0.4568 model score -0.4380 model score -0.3092 model score -0.4951 model score -0.2802 model score -0.5370 model score -0.5259 model score -0.3753 model score -0.3725 model score -0.2952 model score -0.3738 model score -0.3743 model score -0.3524 model score -0.3115 model score -0.4603 model score -0.4759 model score -0.2974 model score -0.4789 model score 1.2751 model score 1.2759 model score 1.2768 model score 1.2718 model score 1.2753 model score 1.2759 model score 1.2762 model score 1.2751 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min: -0.5603 max: 2.5850 weight: 0.4757 eval: 1.2720 min: -0.5603 max: 2.5850 weight: 0.9818 eval: -0.4969 min: -0.5603 max: 2.5850 weight: 0.9606 eval: -0.4225 min: -0.5603 max: 2.5850 weight: 0.9861 eval: -0.5116 min: -0.5603 max: 2.5850 weight: 0.9207 eval: -0.2831 min: -0.5603 max: 2.5850 weight: 0.9847 eval: -0.5067 min: -0.5603 max: 2.5850 weight: 0.2608 eval: 2.0229 min: -0.5603 max: 2.5850 weight: 0.4097 eval: 1.5028 min: -0.5603 max: 2.5850 weight: 0.1958 eval: 2.2503 min: -0.5603 max: 2.5850 weight: 0.2808 eval: 1.9532 min: -0.5603 max: 2.5850 weight: 0.2784 eval: 1.9616 min: -0.5603 max: 2.5850 weight: 0.9586 eval: -0.4157 min: -0.5603 max: 2.5850 weight: 0.9826 eval: -0.4995 min: -0.5603 max: 2.5850 weight: 0.9832 eval: -0.5018 min: -0.5603 max: 2.5850 weight: 0.9418 eval: -0.3568 min: -0.5603 max: 2.5850 weight: 0.9663 eval: -0.4426 min: -0.5603 max: 2.5850 weight: 0.9360 eval: -0.3368 min: -0.5603 max: 2.5850 weight: 0.9643 eval: -0.4357 min: -0.5603 max: 2.5850 weight: 0.8605 eval: -0.0729 min: -0.5603 max: 2.5850 weight: 0.9589 eval: -0.4168 min: -0.5603 max: 2.5850 weight: 0.9419 eval: -0.3573 min: -0.5603 max: 2.5850 weight: 0.9401 eval: -0.3510 min: -0.5603 max: 2.5850 weight: 0.9247 eval: -0.2972 min: -0.5603 max: 2.5850 weight: 0.8918 eval: -0.1820 min: -0.5603 max: 2.5850 weight: 0.8995 eval: -0.2093 min: -0.5603 max: 2.5850 weight: 0.8843 eval: -0.1558 min: -0.5603 max: 2.5850 weight: 0.9319 eval: -0.3222 min: -0.5603 max: 2.5850 weight: 0.9736 eval: -0.4682 min: -0.5603 max: 2.5850 Adding 6726 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -341.3524, CN propb: -341.3524 weights: 0.4090 constraints: 486 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 486 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 486 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 6240 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 6240 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 6726 # command: