# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/
# command:# reading dunbrack-2191.atoms
#
#computed average backbone with maximum peptide_sq_deviance = 0.002
# computed average trans backbone unit from 53157 examples
# computed average trans backbone unit before proline from 2010 examples
# computed average cis backbone unit from 97 examples
# trans (non-proline) backbone unit:
#	  CA= -2.2087 1.0126 -0.0030
#	   O= -0.1499 2.2440 0.0016
#	   C= -0.6889 1.1368 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4581 -0.0000 0.0000
# cis backbone unit:
#	  CA= -0.1436 2.4534 -0.0002
#	   O= -2.0284 0.9742 0.0015
#	   C= -0.8018 1.0771 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4668 0.0000 0.0000
# trans backbone unit before proline:
#	  CA= -2.2100 1.0631 -0.0014
#	   O= -0.1236 2.2458 0.0075
#	   C= -0.6872 1.1517 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4660 0.0000 0.0000


# After reading dunbrack-2191.atoms have 2191 chains in training database
#  Count of chains,residues,atoms: 2191,500310,3902258
#  493341 residues have no bad marker
#  3226 residues lack atoms needed to compute omega
#  1453 residues have cis peptide
#  number of each bad type:
#	NON_STANDARD_RESIDUE	4
#	HAS_OXT	1167
#	TOO_MANY_ATOMS	1
#	TOO_FEW_ATOMS	3052
#	HAS_UNKNOWN_ATOMS	9
#	HAS_DUPLICATE_ATOMS	0
#	CHAIN_BREAK_BEFORE	979
#	NON_PLANAR_PEPTIDE	888
#	BAD_PEPTIDE	2680
#  Note: may sum to more than number of residues, 
#    because one residue may have multiple problems
# command:# Reading rotamer library from dunbrack-2191.rot
# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/
# command:# ReadAtomType exp-pdb.types
Read AtomType exp-pdb with 49 types.
# command:# ReadClashTable exp-pdb-2191-2symm.clash
# Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2
# command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0378/
# command:# Making conformation for sequence T0378 numbered 1 through 254
Created new target T0378 from T0378.a2m
# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0378/
# command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0378//projects/compbio/experiments/protein-predict/casp7/T0378/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0378//projects/compbio/experiments/protein-predict/casp7/T0378/align.constraints_v3.costfcn.gz for input
Trying /projects/compbio/experiments/protein-predict/casp7/T0378/align.constraints_v3.costfcn
# reading script from file /projects/compbio/experiments/protein-predict/casp7/T0378/align.constraints_v3.costfcn
# future Constraint commands -> align
# future HelixConstraint commands -> align
# future StrandConstraint commands -> align
# future SheetConstraint commands -> align
# future Hbond commands -> align
# future SSbond commands -> align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)V201.CB) [> 4.1707 = 6.9512 < 9.0366] w=1.0000 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)L200.CB) [> 3.9058 = 6.5096 < 8.4625] w=0.9824 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)W130.CB) [> 3.0330 = 5.0550 < 6.5715] w=0.9629 to align
# Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)A198.CB) [> 3.6168 = 6.0281 < 7.8365] w=0.9470 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)G132.CA) [> 3.6581 = 6.0968 < 7.9259] w=0.9457 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)W130.CB) [> 4.0484 = 6.7474 < 8.7716] w=0.9433 to align
# Constraint # added constraint: constraint((T0378)L118.CB, (T0378)V129.CB) [> 3.7530 = 6.2550 < 8.1315] w=0.9307 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)V129.CB) [> 3.0591 = 5.0984 < 6.6279] w=0.9265 to align
# Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)I199.CB) [> 4.1526 = 6.9210 < 8.9973] w=0.9263 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)I126.CB) [> 3.1602 = 5.2669 < 6.8470] w=0.9255 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)I126.CB) [> 4.0650 = 6.7750 < 8.8076] w=0.9211 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)H128.CB) [> 3.0430 = 5.0717 < 6.5933] w=0.9192 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)R127.CB) [> 3.6532 = 6.0886 < 7.9152] w=0.9170 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)R127.CB) [> 3.6522 = 6.0870 < 7.9131] w=0.9161 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)I126.CB) [> 3.0949 = 5.1582 < 6.7057] w=0.9028 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)G132.CA) [> 3.5800 = 5.9666 < 7.7565] w=0.8993 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)V129.CB) [> 4.3703 = 7.2839 < 9.4690] w=0.8865 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)V201.CB) [> 2.9718 = 4.9530 < 6.4389] w=0.8761 to align
# Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)L200.CB) [> 3.3135 = 5.5224 < 7.1792] w=0.8620 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)I199.CB) [> 3.7283 = 6.2139 < 8.0780] w=0.8510 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)W130.CB) [> 4.1116 = 6.8526 < 8.9084] w=0.8475 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)T157.CB) [> 3.3241 = 5.5402 < 7.2023] w=0.8436 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)L202.CB) [> 3.4592 = 5.7653 < 7.4948] w=0.8417 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)V129.CB) [> 3.9092 = 6.5154 < 8.4700] w=0.8414 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)I117.CB) [> 3.6786 = 6.1311 < 7.9704] w=0.8230 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)H128.CB) [> 4.2542 = 7.0904 < 9.2175] w=0.8165 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)W130.CB) [> 3.9759 = 6.6265 < 8.6145] w=0.8060 to align
# Constraint # added constraint: constraint((T0378)G100.CA, (T0378)R127.CB) [> 3.1104 = 5.1841 < 6.7393] w=0.8030 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)G125.CA) [> 3.9551 = 6.5918 < 8.5693] w=0.7995 to align
# Constraint # added constraint: constraint((T0378)I117.CB, (T0378)V129.CB) [> 4.0741 = 6.7901 < 8.8272] w=0.7987 to align
# Constraint # added constraint: constraint((T0378)V129.CB, (T0378)Q155.CB) [> 4.2253 = 7.0422 < 9.1548] w=0.7891 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)T157.CB) [> 4.2797 = 7.1328 < 9.2726] w=0.7888 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)P156.CB) [> 3.8468 = 6.4113 < 8.3347] w=0.7867 to align
# Constraint # added constraint: constraint((T0378)P175.CB, (T0378)A198.CB) [> 3.3110 = 5.5183 < 7.1738] w=0.7841 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)A121.CB) [> 3.3496 = 5.5826 < 7.2574] w=0.7841 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)P156.CB) [> 4.5610 = 7.6017 < 9.8822] w=0.7816 to align
# Constraint # added constraint: constraint((T0378)V176.CB, (T0378)I199.CB) [> 3.0591 = 5.0986 < 6.6282] w=0.7815 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)L131.CB) [> 3.2187 = 5.3645 < 6.9738] w=0.7814 to align
# Constraint # added constraint: constraint((T0378)V129.CB, (T0378)T157.CB) [> 4.2165 = 7.0274 < 9.1357] w=0.7792 to align
# Constraint # added constraint: constraint((T0378)H128.CB, (T0378)Q155.CB) [> 3.2185 = 5.3642 < 6.9734] w=0.7734 to align
# Constraint # added constraint: constraint((T0378)V129.CB, (T0378)V154.CB) [> 3.5081 = 5.8469 < 7.6009] w=0.7682 to align
# Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)V201.CB) [> 4.0805 = 6.8009 < 8.8412] w=0.7612 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)L200.CB) [> 4.0857 = 6.8095 < 8.8523] w=0.7602 to align
# Constraint # added constraint: constraint((T0378)V129.CB, (T0378)P156.CB) [> 2.9252 = 4.8753 < 6.3379] w=0.7589 to align
# Constraint # added constraint: constraint((T0378)P175.CB, (T0378)P197.CB) [> 4.0024 = 6.6706 < 8.6718] w=0.7578 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)L200.CB) [> 3.7748 = 6.2914 < 8.1788] w=0.7540 to align
# Constraint # added constraint: constraint((T0378)L202.CB, (T0378)V239.CB) [> 3.6057 = 6.0095 < 7.8124] w=0.7484 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)G132.CA) [> 4.1234 = 6.8724 < 8.9341] w=0.7438 to align
# Constraint # added constraint: constraint((T0378)V201.CB, (T0378)I217.CB) [> 4.1061 = 6.8435 < 8.8966] w=0.7397 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)L131.CB) [> 4.0684 = 6.7807 < 8.8148] w=0.7397 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)A198.CB) [> 3.3876 = 5.6459 < 7.3397] w=0.7197 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)A198.CB) [> 4.2332 = 7.0553 < 9.1719] w=0.7197 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)I199.CB) [> 2.8061 = 4.6768 < 6.0799] w=0.7197 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)V201.CB) [> 2.7664 = 4.6107 < 5.9939] w=0.7197 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)P158.CB) [> 3.4927 = 5.8211 < 7.5674] w=0.7173 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)L200.CB) [> 4.2564 = 7.0939 < 9.2221] w=0.7142 to align
# Constraint # added constraint: constraint((T0378)G115.CA, (T0378)A146.CB) [> 3.4196 = 5.6993 < 7.4091] w=0.7080 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)L202.CB) [> 3.9858 = 6.6430 < 8.6359] w=0.7079 to align
# Constraint # added constraint: constraint((T0378)G132.CA, (T0378)T162.CB) [> 3.8118 = 6.3530 < 8.2588] w=0.7078 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)L200.CB) [> 3.1736 = 5.2893 < 6.8761] w=0.6991 to align
# Constraint # added constraint: constraint((T0378)H128.CB, (T0378)V154.CB) [> 3.9242 = 6.5403 < 8.5023] w=0.6980 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)L202.CB) [> 4.4977 = 7.4962 < 9.7451] w=0.6970 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)L131.CB) [> 3.9963 = 6.6604 < 8.6586] w=0.6961 to align
# Constraint # added constraint: constraint((T0378)D122.CB, (T0378)V154.CB) [> 3.3180 = 5.5300 < 7.1890] w=0.6939 to align
# Constraint # added constraint: constraint((T0378)H128.CB, (T0378)T157.CB) [> 4.0499 = 6.7499 < 8.7748] w=0.6885 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)L202.CB) [> 4.1969 = 6.9948 < 9.0932] w=0.6873 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)L202.CB) [> 4.1943 = 6.9905 < 9.0877] w=0.6873 to align
# Constraint # added constraint: constraint((T0378)P175.CB, (T0378)I199.CB) [> 4.2132 = 7.0220 < 9.1287] w=0.6870 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)V129.CB) [> 4.4466 = 7.4109 < 9.6342] w=0.6861 to align
# Constraint # added constraint: constraint((T0378)G132.CA, (T0378)P158.CB) [> 3.9609 = 6.6016 < 8.5820] w=0.6857 to align
# Constraint # added constraint: constraint((T0378)L118.CB, (T0378)S147.CB) [> 3.4294 = 5.7157 < 7.4304] w=0.6830 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)I117.CB) [> 4.3570 = 7.2618 < 9.4403] w=0.6826 to align
# Constraint # added constraint: constraint((T0378)V176.CB, (T0378)V201.CB) [> 3.9611 = 6.6019 < 8.5825] w=0.6818 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)T133.CB) [> 3.4111 = 5.6852 < 7.3907] w=0.6813 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)L202.CB) [> 3.2888 = 5.4813 < 7.1257] w=0.6780 to align
# Constraint # added constraint: constraint((T0378)L202.CB, (T0378)T243.CB) [> 3.5827 = 5.9712 < 7.7625] w=0.6773 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)L221.CB) [> 3.8051 = 6.3419 < 8.2444] w=0.6682 to align
# Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)L221.CB) [> 3.4335 = 5.7225 < 7.4392] w=0.6682 to align
# Constraint # added constraint: constraint((T0378)G132.CA, (T0378)K160.CB) [> 4.1427 = 6.9044 < 8.9757] w=0.6624 to align
# Constraint # added constraint: constraint((T0378)G100.CA, (T0378)P197.CB) [> 2.8572 = 4.7620 < 6.1905] w=0.6571 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)G132.CA) [> 4.1780 = 6.9634 < 9.0524] w=0.6565 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)I199.CB) [> 4.2551 = 7.0918 < 9.2193] w=0.6559 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)P197.CB) [> 4.2993 = 7.1655 < 9.3152] w=0.6549 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)G203.CA) [> 2.6031 = 4.3385 < 5.6401] w=0.6456 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)S204.CB) [> 3.5784 = 5.9641 < 7.7533] w=0.6436 to align
# Constraint # added constraint: constraint((T0378)L118.CB, (T0378)P156.CB) [> 3.9641 = 6.6069 < 8.5889] w=0.6422 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)G203.CA) [> 4.1718 = 6.9530 < 9.0389] w=0.6366 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)L159.CB) [> 3.8406 = 6.4010 < 8.3214] w=0.6350 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)I217.CB) [> 3.3831 = 5.6385 < 7.3301] w=0.6271 to align
# Constraint # added constraint: constraint((T0378)D122.CB, (T0378)A150.CB) [> 3.0015 = 5.0025 < 6.5033] w=0.6221 to align
# Constraint # added constraint: constraint((T0378)V108.CB, (T0378)I117.CB) [> 3.8809 = 6.4681 < 8.4085] w=0.6182 to align
# Constraint # added constraint: constraint((T0378)V108.CB, (T0378)L131.CB) [> 3.4991 = 5.8318 < 7.5813] w=0.6172 to align
# Constraint # added constraint: constraint((T0378)A121.CB, (T0378)V154.CB) [> 3.4308 = 5.7180 < 7.4334] w=0.6077 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)I223.CB) [> 4.1087 = 6.8478 < 8.9021] w=0.6057 to align
# Constraint # added constraint: constraint((T0378)L200.CB, (T0378)T243.CB) [> 4.4085 = 7.3474 < 9.5517] w=0.6020 to align
# Constraint # added constraint: constraint((T0378)T120.CB, (T0378)A240.CB) [> 3.9511 = 6.5852 < 8.5608] w=0.6020 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)T165.CB) [> 3.3887 = 5.6479 < 7.3422] w=0.6016 to align
# Constraint # added constraint: constraint((T0378)V114.CB, (T0378)L131.CB) [> 4.2173 = 7.0289 < 9.1375] w=0.5997 to align
# Constraint # added constraint: constraint((T0378)L166.CB, (T0378)V176.CB) [> 3.5878 = 5.9797 < 7.7736] w=0.5996 to align
# Constraint # added constraint: constraint((T0378)G100.CA, (T0378)A198.CB) [> 4.0376 = 6.7293 < 8.7480] w=0.5949 to align
# Constraint # added constraint: constraint((T0378)V176.CB, (T0378)A198.CB) [> 4.4899 = 7.4831 < 9.7281] w=0.5939 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)L131.CB) [> 4.1492 = 6.9153 < 8.9899] w=0.5905 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)T222.CB) [> 4.2826 = 7.1377 < 9.2791] w=0.5849 to align
# Constraint # added constraint: constraint((T0378)L118.CB, (T0378)A150.CB) [> 3.2636 = 5.4393 < 7.0711] w=0.5837 to align
# Constraint # added constraint: constraint((T0378)G203.CA, (T0378)V239.CB) [> 3.9633 = 6.6054 < 8.5871] w=0.5832 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)V201.CB) [> 3.8840 = 6.4734 < 8.4154] w=0.5830 to align
# Constraint # added constraint: constraint((T0378)G132.CA, (T0378)L159.CB) [> 3.1826 = 5.3043 < 6.8956] w=0.5808 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)G203.CA) [> 4.1840 = 6.9734 < 9.0654] w=0.5782 to align
# Constraint # added constraint: constraint((T0378)V176.CB, (T0378)I217.CB) [> 3.5177 = 5.8628 < 7.6217] w=0.5646 to align
# Constraint # added constraint: constraint((T0378)D182.CB, (T0378)T222.CB) [> 4.2491 = 7.0819 < 9.2064] w=0.5642 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)T222.CB) [> 3.3621 = 5.6035 < 7.2845] w=0.5642 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)V114.CB) [> 4.0171 = 6.6952 < 8.7038] w=0.5630 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)L200.CB) [> 4.1793 = 6.9655 < 9.0552] w=0.5622 to align
# Constraint # added constraint: constraint((T0378)P175.CB, (T0378)E196.CB) [> 3.6993 = 6.1654 < 8.0151] w=0.5560 to align
# Constraint # added constraint: constraint((T0378)L118.CB, (T0378)V143.CB) [> 3.9855 = 6.6425 < 8.6353] w=0.5485 to align
# Constraint # added constraint: constraint((T0378)G183.CA, (T0378)T222.CB) [> 2.9662 = 4.9437 < 6.4268] w=0.5439 to align
# Constraint # added constraint: constraint((T0378)S204.CB, (T0378)V239.CB) [> 4.0506 = 6.7510 < 8.7764] w=0.5428 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)S204.CB) [> 3.1694 = 5.2823 < 6.8670] w=0.5412 to align
# Constraint # added constraint: constraint((T0378)I174.CB, (T0378)A198.CB) [> 3.9155 = 6.5259 < 8.4837] w=0.5412 to align
# Constraint # added constraint: constraint((T0378)I126.CB, (T0378)V154.CB) [> 3.7273 = 6.2122 < 8.0759] w=0.5405 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)T162.CB) [> 3.7496 = 6.2493 < 8.1241] w=0.5387 to align
# Constraint # added constraint: constraint((T0378)V114.CB, (T0378)V143.CB) [> 3.4548 = 5.7580 < 7.4855] w=0.5383 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)T133.CB) [> 4.0512 = 6.7520 < 8.7776] w=0.5350 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)I174.CB) [> 4.0058 = 6.6762 < 8.6791] w=0.5296 to align
# Constraint # added constraint: constraint((T0378)Q109.CB, (T0378)S135.CB) [> 3.8669 = 6.4449 < 8.3784] w=0.5250 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)I209.CB) [> 3.7434 = 6.2390 < 8.1108] w=0.5231 to align
# Constraint # added constraint: constraint((T0378)T162.CB, (T0378)V213.CB) [> 3.7183 = 6.1971 < 8.0563] w=0.5203 to align
# Constraint # added constraint: constraint((T0378)V108.CB, (T0378)S204.CB) [> 3.7024 = 6.1706 < 8.0218] w=0.5201 to align
# Constraint # added constraint: constraint((T0378)T120.CB, (T0378)A244.CB) [> 2.8535 = 4.7559 < 6.1827] w=0.5191 to align
# Constraint # added constraint: constraint((T0378)L200.CB, (T0378)C247.CB) [> 4.1945 = 6.9908 < 9.0880] w=0.5191 to align
# Constraint # added constraint: constraint((T0378)I174.CB, (T0378)P197.CB) [> 3.1935 = 5.3225 < 6.9192] w=0.5171 to align
# Constraint # added constraint: constraint((T0378)G132.CA, (T0378)T165.CB) [> 3.7774 = 6.2957 < 8.1844] w=0.5111 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)L159.CB) [> 3.4886 = 5.8143 < 7.5586] w=0.5089 to align
# Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)P192.CB) [> 3.8803 = 6.4672 < 8.4073] w=0.5000 to align
# Constraint # added constraint: constraint((T0378)F124.CB, (T0378)S248.CB) [> 3.6253 = 6.0423 < 7.8549] w=0.4983 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)V213.CB) [> 3.8292 = 6.3820 < 8.2966] w=0.4980 to align
# Constraint # added constraint: constraint((T0378)R119.CB, (T0378)A150.CB) [> 3.0820 = 5.1367 < 6.6777] w=0.4979 to align
# Constraint # added constraint: constraint((T0378)G115.CA, (T0378)S147.CB) [> 3.0538 = 5.0897 < 6.6166] w=0.4971 to align
# Constraint # added constraint: constraint((T0378)I174.CB, (T0378)I199.CB) [> 2.9652 = 4.9420 < 6.4246] w=0.4814 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)G203.CA) [> 3.8871 = 6.4785 < 8.4221] w=0.4810 to align
# Constraint # added constraint: constraint((T0378)R119.CB, (T0378)S147.CB) [> 3.7120 = 6.1866 < 8.0427] w=0.4786 to align
# Constraint # added constraint: constraint((T0378)F124.CB, (T0378)C247.CB) [> 2.8979 = 4.8298 < 6.2787] w=0.4777 to align
# Constraint # added constraint: constraint((T0378)I117.CB, (T0378)A240.CB) [> 3.1224 = 5.2040 < 6.7652] w=0.4777 to align
# Constraint # added constraint: constraint((T0378)R119.CB, (T0378)A146.CB) [> 3.6583 = 6.0972 < 7.9264] w=0.4768 to align
# Constraint # added constraint: constraint((T0378)L118.CB, (T0378)L151.CB) [> 3.6430 = 6.0717 < 7.8932] w=0.4755 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)H128.CB) [> 4.4601 = 7.4336 < 9.6636] w=0.4730 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)V64.CB) [> 3.4834 = 5.8057 < 7.5473] w=0.4685 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)V201.CB) [> 4.2688 = 7.1146 < 9.2490] w=0.4677 to align
# Constraint # added constraint: constraint((T0378)D122.CB, (T0378)R153.CB) [> 3.6829 = 6.1382 < 7.9797] w=0.4618 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)R220.CB) [> 3.1058 = 5.1763 < 6.7292] w=0.4606 to align
# Constraint # added constraint: constraint((T0378)G115.CA, (T0378)A150.CB) [> 3.8614 = 6.4357 < 8.3664] w=0.4590 to align
# Constraint # added constraint: constraint((T0378)T116.CB, (T0378)A240.CB) [> 2.4399 = 4.0665 < 5.2864] w=0.4582 to align
# Constraint # added constraint: constraint((T0378)E205.CB, (T0378)V239.CB) [> 3.2193 = 5.3656 < 6.9752] w=0.4566 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)P197.CB) [> 4.4194 = 7.3657 < 9.5754] w=0.4534 to align
# Constraint # added constraint: constraint((T0378)I223.CB, (T0378)L246.CB) [> 4.2767 = 7.1278 < 9.2661] w=0.4522 to align
# Constraint # added constraint: constraint((T0378)L202.CB, (T0378)A242.CB) [> 3.6795 = 6.1326 < 7.9724] w=0.4522 to align
# Constraint # added constraint: constraint((T0378)L200.CB, (T0378)L246.CB) [> 3.4664 = 5.7774 < 7.5106] w=0.4522 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)T165.CB) [> 3.6074 = 6.0123 < 7.8160] w=0.4521 to align
# Constraint # added constraint: constraint((T0378)G47.CA, (T0378)L66.CB) [> 3.5132 = 5.8554 < 7.6120] w=0.4498 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)I209.CB) [> 3.5479 = 5.9131 < 7.6870] w=0.4494 to align
# Constraint # added constraint: constraint((T0378)L45.CB, (T0378)V64.CB) [> 3.9636 = 6.6060 < 8.5878] w=0.4491 to align
# Constraint # added constraint: constraint((T0378)L45.CB, (T0378)V63.CB) [> 3.3087 = 5.5144 < 7.1688] w=0.4491 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)I199.CB) [> 4.5426 = 7.5709 < 9.8422] w=0.4476 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)A214.CB) [> 4.2806 = 7.1343 < 9.2745] w=0.4404 to align
# Constraint # added constraint: constraint((T0378)V176.CB, (T0378)D219.CB) [> 4.3036 = 7.1726 < 9.3244] w=0.4403 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)L221.CB) [> 3.4978 = 5.8297 < 7.5786] w=0.4399 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)T162.CB) [> 4.2899 = 7.1498 < 9.2947] w=0.4366 to align
# Constraint # added constraint: constraint((T0378)G115.CA, (T0378)V143.CB) [> 3.4301 = 5.7168 < 7.4319] w=0.4362 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)I209.CB) [> 4.2183 = 7.0304 < 9.1396] w=0.4356 to align
# Constraint # added constraint: constraint((T0378)G132.CA, (T0378)N161.CB) [> 4.1697 = 6.9496 < 9.0344] w=0.4334 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)G134.CA) [> 3.9250 = 6.5417 < 8.5042] w=0.4295 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)T165.CB) [> 3.6651 = 6.1085 < 7.9410] w=0.4230 to align
# Constraint # added constraint: constraint((T0378)P175.CB, (T0378)D219.CB) [> 4.2473 = 7.0788 < 9.2024] w=0.4196 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)A242.CB) [> 3.7896 = 6.3160 < 8.2108] w=0.4196 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)L246.CB) [> 3.9487 = 6.5811 < 8.5555] w=0.4196 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)T222.CB) [> 3.6311 = 6.0518 < 7.8674] w=0.4191 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)L221.CB) [> 4.4414 = 7.4024 < 9.6231] w=0.4191 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)D219.CB) [> 3.9388 = 6.5647 < 8.5342] w=0.4191 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)T243.CB) [> 3.9789 = 6.6315 < 8.6209] w=0.4168 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)C247.CB) [> 4.1879 = 6.9798 < 9.0737] w=0.4168 to align
# Constraint # added constraint: constraint((T0378)V108.CB, (T0378)V239.CB) [> 3.8652 = 6.4420 < 8.3746] w=0.4168 to align
# Constraint # added constraint: constraint((T0378)N113.CB, (T0378)V239.CB) [> 3.3124 = 5.5206 < 7.1768] w=0.4168 to align
# Constraint # added constraint: constraint((T0378)N113.CB, (T0378)A240.CB) [> 3.0207 = 5.0345 < 6.5448] w=0.4168 to align
# Constraint # added constraint: constraint((T0378)I117.CB, (T0378)V239.CB) [> 4.2923 = 7.1538 < 9.3000] w=0.4168 to align
# Constraint # added constraint: constraint((T0378)I117.CB, (T0378)T243.CB) [> 2.9697 = 4.9495 < 6.4344] w=0.4168 to align
# Constraint # added constraint: constraint((T0378)T120.CB, (T0378)T243.CB) [> 3.5284 = 5.8807 < 7.6448] w=0.4168 to align
# Constraint # added constraint: constraint((T0378)T120.CB, (T0378)C247.CB) [> 3.6519 = 6.0865 < 7.9124] w=0.4168 to align
# Constraint # added constraint: constraint((T0378)A121.CB, (T0378)C247.CB) [> 4.0135 = 6.6892 < 8.6959] w=0.4168 to align
# Constraint # added constraint: constraint((T0378)I126.CB, (T0378)C247.CB) [> 3.8973 = 6.4954 < 8.4441] w=0.4168 to align
# Constraint # added constraint: constraint((T0378)P192.CB, (T0378)L221.CB) [> 3.3411 = 5.5684 < 7.2390] w=0.4166 to align
# Constraint # added constraint: constraint((T0378)R127.CB, (T0378)V154.CB) [> 3.7858 = 6.3096 < 8.2025] w=0.4154 to align
# Constraint # added constraint: constraint((T0378)F124.CB, (T0378)A244.CB) [> 3.7598 = 6.2664 < 8.1463] w=0.4144 to align
# Constraint # added constraint: constraint((T0378)T48.CB, (T0378)L66.CB) [> 3.8058 = 6.3430 < 8.2459] w=0.4141 to align
# Constraint # added constraint: constraint((T0378)G47.CA, (T0378)M85.CB) [> 4.2028 = 7.0046 < 9.1060] w=0.4124 to align
# Constraint # added constraint: constraint((T0378)V114.CB, (T0378)S147.CB) [> 4.1851 = 6.9751 < 9.0676] w=0.4121 to align
# Constraint # added constraint: constraint((T0378)P111.CB, (T0378)D137.CB) [> 3.5683 = 5.9472 < 7.7313] w=0.4115 to align
# Constraint # added constraint: constraint((T0378)I223.CB, (T0378)I245.CB) [> 3.5544 = 5.9240 < 7.7012] w=0.4106 to align
# Constraint # added constraint: constraint((T0378)I223.CB, (T0378)A242.CB) [> 3.6642 = 6.1069 < 7.9390] w=0.4106 to align
# Constraint # added constraint: constraint((T0378)G47.CA, (T0378)E65.CB) [> 3.6629 = 6.1048 < 7.9363] w=0.4097 to align
# Constraint # added constraint: constraint((T0378)M44.CB, (T0378)V63.CB) [> 4.1444 = 6.9073 < 8.9795] w=0.4082 to align
# Constraint # added constraint: constraint((T0378)V27.CB, (T0378)A86.CB) [> 2.9556 = 4.9260 < 6.4038] w=0.4079 to align
# Constraint # added constraint: constraint((T0378)V108.CB, (T0378)S135.CB) [> 3.8644 = 6.4407 < 8.3729] w=0.4007 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)I209.CB) [> 3.7136 = 6.1894 < 8.0462] w=0.3988 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)G208.CA) [> 4.1305 = 6.8841 < 8.9493] w=0.3987 to align
# Constraint # added constraint: constraint((T0378)P111.CB, (T0378)A146.CB) [> 4.4006 = 7.3343 < 9.5346] w=0.3951 to align
# Constraint # added constraint: constraint((T0378)I223.CB, (T0378)L237.CB) [> 3.9146 = 6.5244 < 8.4817] w=0.3947 to align
# Constraint # added constraint: constraint((T0378)G115.CA, (T0378)L151.CB) [> 4.1453 = 6.9089 < 8.9816] w=0.3943 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)C247.CB) [> 4.3819 = 7.3032 < 9.4942] w=0.3940 to align
# Constraint # added constraint: constraint((T0378)L45.CB, (T0378)A86.CB) [> 3.2761 = 5.4601 < 7.0982] w=0.3923 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)M85.CB) [> 3.3110 = 5.5183 < 7.1738] w=0.3923 to align
# Constraint # added constraint: constraint((T0378)G47.CA, (T0378)L84.CB) [> 3.1635 = 5.2726 < 6.8544] w=0.3921 to align
# Constraint # added constraint: constraint((T0378)Q109.CB, (T0378)A136.CB) [> 3.6951 = 6.1586 < 8.0061] w=0.3888 to align
# Constraint # added constraint: constraint((T0378)A26.CB, (T0378)M85.CB) [> 3.5417 = 5.9028 < 7.6737] w=0.3871 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)G208.CA) [> 4.4450 = 7.4082 < 9.6307] w=0.3868 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)S135.CB) [> 3.7961 = 6.3269 < 8.2250] w=0.3855 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)A214.CB) [> 3.6212 = 6.0354 < 7.8460] w=0.3778 to align
# Constraint # added constraint: constraint((T0378)V108.CB, (T0378)G203.CA) [> 4.2091 = 7.0152 < 9.1197] w=0.3773 to align
# Constraint # added constraint: constraint((T0378)V33.CB, (T0378)L45.CB) [> 3.8699 = 6.4498 < 8.3848] w=0.3770 to align
# Constraint # added constraint: constraint((T0378)L200.CB, (T0378)W250.CB) [> 4.3913 = 7.3189 < 9.5145] w=0.3752 to align
# Constraint # added constraint: constraint((T0378)A198.CB, (T0378)W250.CB) [> 4.1748 = 6.9581 < 9.0455] w=0.3752 to align
# Constraint # added constraint: constraint((T0378)F194.CB, (T0378)W250.CB) [> 2.2891 = 3.8151 < 4.9597] w=0.3752 to align
# Constraint # added constraint: constraint((T0378)F194.CB, (T0378)E249.CB) [> 4.0715 = 6.7859 < 8.8217] w=0.3752 to align
# Constraint # added constraint: constraint((T0378)F124.CB, (T0378)R251.CB) [> 2.9650 = 4.9416 < 6.4241] w=0.3752 to align
# Constraint # added constraint: constraint((T0378)R119.CB, (T0378)M148.CB) [> 3.5187 = 5.8645 < 7.6238] w=0.3752 to align
# Constraint # added constraint: constraint((T0378)G115.CA, (T0378)A240.CB) [> 4.5970 = 7.6617 < 9.9602] w=0.3752 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)S210.CB) [> 4.0363 = 6.7271 < 8.7453] w=0.3752 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)W250.CB) [> 3.6628 = 6.1046 < 7.9360] w=0.3752 to align
# Constraint # added constraint: constraint((T0378)G112.CA, (T0378)A146.CB) [> 3.2746 = 5.4577 < 7.0950] w=0.3741 to align
# Constraint # added constraint: constraint((T0378)G115.CA, (T0378)K142.CB) [> 4.3979 = 7.3299 < 9.5288] w=0.3738 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)F124.CB) [> 4.4182 = 7.3637 < 9.5728] w=0.3718 to align
# Constraint # added constraint: constraint((T0378)V108.CB, (T0378)G132.CA) [> 3.8877 = 6.4795 < 8.4233] w=0.3670 to align
# Constraint # added constraint: constraint((T0378)M44.CB, (T0378)E62.CB) [> 3.4384 = 5.7307 < 7.4499] w=0.3667 to align
# Constraint # added constraint: constraint((T0378)E28.CB, (T0378)M85.CB) [> 2.9768 = 4.9614 < 6.4498] w=0.3663 to align
# Constraint # added constraint: constraint((T0378)A26.CB, (T0378)V87.CB) [> 3.6493 = 6.0821 < 7.9067] w=0.3663 to align
# Constraint # added constraint: constraint((T0378)F25.CB, (T0378)V87.CB) [> 4.5580 = 7.5967 < 9.8756] w=0.3663 to align
# Constraint # added constraint: constraint((T0378)A26.CB, (T0378)A86.CB) [> 4.0669 = 6.7781 < 8.8116] w=0.3663 to align
# Constraint # added constraint: constraint((T0378)F25.CB, (T0378)F88.CB) [> 3.2563 = 5.4271 < 7.0553] w=0.3663 to align
# Constraint # added constraint: constraint((T0378)R43.CB, (T0378)E62.CB) [> 4.1218 = 6.8696 < 8.9305] w=0.3655 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L66.CB) [> 3.4098 = 5.6831 < 7.3880] w=0.3649 to align
# Constraint # added constraint: constraint((T0378)V176.CB, (T0378)L200.CB) [> 4.4576 = 7.4293 < 9.6581] w=0.3631 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)G178.CA) [> 3.4303 = 5.7171 < 7.4322] w=0.3605 to align
# Constraint # added constraint: constraint((T0378)V176.CB, (T0378)T218.CB) [> 3.1017 = 5.1695 < 6.7204] w=0.3570 to align
# Constraint # added constraint: constraint((T0378)Q109.CB, (T0378)S204.CB) [> 3.5617 = 5.9362 < 7.7170] w=0.3543 to align
# Constraint # added constraint: constraint((T0378)V163.CB, (T0378)E216.CB) [> 3.3313 = 5.5522 < 7.2178] w=0.3536 to align
# Constraint # added constraint: constraint((T0378)A121.CB, (T0378)A150.CB) [> 4.1389 = 6.8981 < 8.9675] w=0.3533 to align
# Constraint # added constraint: constraint((T0378)R43.CB, (T0378)F88.CB) [> 3.9218 = 6.5363 < 8.4972] w=0.3518 to align
# Constraint # added constraint: constraint((T0378)G29.CA, (T0378)Q82.CB) [> 3.0007 = 5.0011 < 6.5015] w=0.3518 to align
# Constraint # added constraint: constraint((T0378)E28.CB, (T0378)Q82.CB) [> 3.2271 = 5.3786 < 6.9921] w=0.3518 to align
# Constraint # added constraint: constraint((T0378)L45.CB, (T0378)E62.CB) [> 4.1922 = 6.9871 < 9.0832] w=0.3515 to align
# Constraint # added constraint: constraint((T0378)G47.CA, (T0378)V63.CB) [> 4.2084 = 7.0141 < 9.1183] w=0.3512 to align
# Constraint # added constraint: constraint((T0378)V114.CB, (T0378)A146.CB) [> 3.4328 = 5.7213 < 7.4377] w=0.3508 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)A86.CB) [> 4.1514 = 6.9190 < 8.9947] w=0.3507 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L84.CB) [> 4.0915 = 6.8192 < 8.8649] w=0.3507 to align
# Constraint # added constraint: constraint((T0378)L45.CB, (T0378)V87.CB) [> 4.2611 = 7.1018 < 9.2324] w=0.3507 to align
# Constraint # added constraint: constraint((T0378)M44.CB, (T0378)V87.CB) [> 2.6963 = 4.4938 < 5.8419] w=0.3507 to align
# Constraint # added constraint: constraint((T0378)M44.CB, (T0378)A86.CB) [> 4.2314 = 7.0523 < 9.1680] w=0.3507 to align
# Constraint # added constraint: constraint((T0378)R43.CB, (T0378)V87.CB) [> 3.2794 = 5.4656 < 7.1053] w=0.3507 to align
# Constraint # added constraint: constraint((T0378)A26.CB, (T0378)F88.CB) [> 4.1466 = 6.9111 < 8.9844] w=0.3455 to align
# Constraint # added constraint: constraint((T0378)G100.CA, (T0378)E196.CB) [> 4.3164 = 7.1940 < 9.3521] w=0.3429 to align
# Constraint # added constraint: constraint((T0378)H128.CB, (T0378)Y177.CB) [> 3.7313 = 6.2188 < 8.0844] w=0.3411 to align
# Constraint # added constraint: constraint((T0378)S147.CB, (T0378)P156.CB) [> 3.0487 = 5.0812 < 6.6055] w=0.3395 to align
# Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)T218.CB) [> 3.9994 = 6.6656 < 8.6653] w=0.3362 to align
# Constraint # added constraint: constraint((T0378)P175.CB, (T0378)T218.CB) [> 2.9208 = 4.8680 < 6.3284] w=0.3362 to align
# Constraint # added constraint: constraint((T0378)F169.CB, (T0378)I199.CB) [> 3.4057 = 5.6761 < 7.3790] w=0.3335 to align
# Constraint # added constraint: constraint((T0378)V114.CB, (T0378)D137.CB) [> 4.1011 = 6.8352 < 8.8857] w=0.3334 to align
# Constraint # added constraint: constraint((T0378)S135.CB, (T0378)S204.CB) [> 3.3038 = 5.5064 < 7.1583] w=0.3325 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)V87.CB) [> 4.5820 = 7.6367 < 9.9277] w=0.3309 to align
# Constraint # added constraint: constraint((T0378)C42.CB, (T0378)F88.CB) [> 3.6230 = 6.0384 < 7.8499] w=0.3309 to align
# Constraint # added constraint: constraint((T0378)V27.CB, (T0378)F88.CB) [> 3.4695 = 5.7826 < 7.5174] w=0.3309 to align
# Constraint # added constraint: constraint((T0378)V27.CB, (T0378)M85.CB) [> 4.0336 = 6.7227 < 8.7395] w=0.3309 to align
# Constraint # added constraint: constraint((T0378)L202.CB, (T0378)L246.CB) [> 4.3775 = 7.2959 < 9.4846] w=0.3271 to align
# Constraint # added constraint: constraint((T0378)T133.CB, (T0378)T162.CB) [> 4.2075 = 7.0125 < 9.1162] w=0.3259 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)Y177.CB) [> 3.0808 = 5.1347 < 6.6751] w=0.3248 to align
# Constraint # added constraint: constraint((T0378)V33.CB, (T0378)L84.CB) [> 3.2553 = 5.4254 < 7.0531] w=0.3247 to align
# Constraint # added constraint: constraint((T0378)G29.CA, (T0378)M85.CB) [> 4.1490 = 6.9150 < 8.9895] w=0.3247 to align
# Constraint # added constraint: constraint((T0378)T48.CB, (T0378)P67.CB) [> 4.1297 = 6.8829 < 8.9478] w=0.3231 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)A179.CB) [> 3.5094 = 5.8490 < 7.6037] w=0.3196 to align
# Constraint # added constraint: constraint((T0378)G132.CA, (T0378)A179.CB) [> 3.3003 = 5.5005 < 7.1507] w=0.3195 to align
# Constraint # added constraint: constraint((T0378)T133.CB, (T0378)N161.CB) [> 3.8311 = 6.3851 < 8.3006] w=0.3175 to align
# Constraint # added constraint: constraint((T0378)L186.CB, (T0378)L221.CB) [> 3.6486 = 6.0810 < 7.9053] w=0.3151 to align
# Constraint # added constraint: constraint((T0378)E205.CB, (T0378)N238.CB) [> 4.3107 = 7.1845 < 9.3398] w=0.3127 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)S236.CB) [> 3.7218 = 6.2031 < 8.0640] w=0.3127 to align
# Constraint # added constraint: constraint((T0378)G125.CA, (T0378)R251.CB) [> 4.4520 = 7.4200 < 9.6460] w=0.3127 to align
# Constraint # added constraint: constraint((T0378)F124.CB, (T0378)W250.CB) [> 4.1240 = 6.8733 < 8.9353] w=0.3127 to align
# Constraint # added constraint: constraint((T0378)N113.CB, (T0378)N238.CB) [> 4.3082 = 7.1803 < 9.3343] w=0.3127 to align
# Constraint # added constraint: constraint((T0378)G203.CA, (T0378)V213.CB) [> 4.6049 = 7.6748 < 9.9773] w=0.3125 to align
# Constraint # added constraint: constraint((T0378)Y187.CB, (T0378)P224.CB) [> 3.9757 = 6.6261 < 8.6139] w=0.3117 to align
# Constraint # added constraint: constraint((T0378)L186.CB, (T0378)P224.CB) [> 3.4305 = 5.7174 < 7.4327] w=0.3115 to align
# Constraint # added constraint: constraint((T0378)V129.CB, (T0378)V143.CB) [> 4.4250 = 7.3751 < 9.5876] w=0.3106 to align
# Constraint # added constraint: constraint((T0378)P30.CB, (T0378)P83.CB) [> 3.9251 = 6.5418 < 8.5043] w=0.3101 to align
# Constraint # added constraint: constraint((T0378)P30.CB, (T0378)L84.CB) [> 3.3186 = 5.5310 < 7.1904] w=0.3101 to align
# Constraint # added constraint: constraint((T0378)V33.CB, (T0378)A86.CB) [> 2.9440 = 4.9067 < 6.3787] w=0.3101 to align
# Constraint # added constraint: constraint((T0378)G47.CA, (T0378)F72.CB) [> 4.2266 = 7.0443 < 9.1576] w=0.3101 to align
# Constraint # added constraint: constraint((T0378)T48.CB, (T0378)P83.CB) [> 3.2401 = 5.4003 < 7.0203] w=0.3101 to align
# Constraint # added constraint: constraint((T0378)F72.CB, (T0378)P81.CB) [> 3.7042 = 6.1737 < 8.0258] w=0.3101 to align
# Constraint # added constraint: constraint((T0378)F72.CB, (T0378)P83.CB) [> 4.5392 = 7.5653 < 9.8349] w=0.3101 to align
# Constraint # added constraint: constraint((T0378)F72.CB, (T0378)M85.CB) [> 3.6731 = 6.1219 < 7.9584] w=0.3101 to align
# Constraint # added constraint: constraint((T0378)I75.CB, (T0378)M85.CB) [> 4.1927 = 6.9879 < 9.0843] w=0.3101 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)V176.CB) [> 4.1540 = 6.9233 < 9.0002] w=0.3044 to align
# Constraint # added constraint: constraint((T0378)G100.CA, (T0378)I126.CB) [> 4.2591 = 7.0985 < 9.2280] w=0.3007 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)I199.CB) [> 3.3988 = 5.6647 < 7.3641] w=0.3006 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)F169.CB) [> 4.1139 = 6.8566 < 8.9136] w=0.3000 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)V176.CB) [> 3.6669 = 6.1116 < 7.9450] w=0.2981 to align
# Constraint # added constraint: constraint((T0378)E188.CB, (T0378)E249.CB) [> 3.6705 = 6.1175 < 7.9527] w=0.2945 to align
# Constraint # added constraint: constraint((T0378)P192.CB, (T0378)E249.CB) [> 4.6353 = 7.7255 < 10.0432] w=0.2918 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)T243.CB) [> 4.4701 = 7.4502 < 9.6853] w=0.2917 to align
# Constraint # added constraint: constraint((T0378)Q109.CB, (T0378)E205.CB) [> 3.4790 = 5.7984 < 7.5379] w=0.2914 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)G208.CA) [> 4.2362 = 7.0604 < 9.1785] w=0.2897 to align
# Constraint # added constraint: constraint((T0378)G29.CA, (T0378)P83.CB) [> 3.9587 = 6.5978 < 8.5771] w=0.2892 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)L166.CB) [> 4.3879 = 7.3131 < 9.5071] w=0.2889 to align
# Constraint # added constraint: constraint((T0378)E205.CB, (T0378)S236.CB) [> 3.7020 = 6.1699 < 8.0209] w=0.2885 to align
# Constraint # added constraint: constraint((T0378)L45.CB, (T0378)M85.CB) [> 4.4870 = 7.4783 < 9.7218] w=0.2882 to align
# Constraint # added constraint: constraint((T0378)P111.CB, (T0378)A136.CB) [> 3.4630 = 5.7717 < 7.5032] w=0.2836 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)W130.CB) [> 3.8615 = 6.4358 < 8.3666] w=0.2798 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)I199.CB) [> 4.1683 = 6.9471 < 9.0312] w=0.2798 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)L181.CB) [> 4.1117 = 6.8528 < 8.9086] w=0.2776 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)G178.CA) [> 4.0210 = 6.7017 < 8.7122] w=0.2776 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)Y177.CB) [> 4.1060 = 6.8433 < 8.8963] w=0.2776 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)V176.CB) [> 4.1144 = 6.8573 < 8.9145] w=0.2776 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)G178.CA) [> 3.3943 = 5.6572 < 7.3543] w=0.2755 to align
# Constraint # added constraint: constraint((T0378)P111.CB, (T0378)V143.CB) [> 2.9845 = 4.9742 < 6.4665] w=0.2746 to align
# Constraint # added constraint: constraint((T0378)H128.CB, (T0378)I174.CB) [> 3.4648 = 5.7746 < 7.5070] w=0.2744 to align
# Constraint # added constraint: constraint((T0378)V144.CB, (T0378)P156.CB) [> 3.0347 = 5.0578 < 6.5751] w=0.2740 to align
# Constraint # added constraint: constraint((T0378)Q184.CB, (T0378)R220.CB) [> 3.9751 = 6.6251 < 8.6127] w=0.2737 to align
# Constraint # added constraint: constraint((T0378)D182.CB, (T0378)R220.CB) [> 4.0998 = 6.8329 < 8.8828] w=0.2737 to align
# Constraint # added constraint: constraint((T0378)Q184.CB, (T0378)T222.CB) [> 4.3211 = 7.2019 < 9.3625] w=0.2729 to align
# Constraint # added constraint: constraint((T0378)G112.CA, (T0378)K142.CB) [> 3.0886 = 5.1477 < 6.6920] w=0.2710 to align
# Constraint # added constraint: constraint((T0378)T116.CB, (T0378)A146.CB) [> 3.1031 = 5.1718 < 6.7234] w=0.2710 to align
# Constraint # added constraint: constraint((T0378)L186.CB, (T0378)I223.CB) [> 3.9310 = 6.5517 < 8.5172] w=0.2698 to align
# Constraint # added constraint: constraint((T0378)M36.CB, (T0378)F88.CB) [> 3.7034 = 6.1723 < 8.0239] w=0.2698 to align
# Constraint # added constraint: constraint((T0378)V27.CB, (T0378)M36.CB) [> 3.5021 = 5.8368 < 7.5879] w=0.2696 to align
# Constraint # added constraint: constraint((T0378)R43.CB, (T0378)D89.CB) [> 4.2641 = 7.1068 < 9.2388] w=0.2685 to align
# Constraint # added constraint: constraint((T0378)T48.CB, (T0378)L84.CB) [> 3.9692 = 6.6153 < 8.5999] w=0.2685 to align
# Constraint # added constraint: constraint((T0378)A24.CB, (T0378)D89.CB) [> 3.1601 = 5.2668 < 6.8468] w=0.2684 to align
# Constraint # added constraint: constraint((T0378)G47.CA, (T0378)P83.CB) [> 4.0170 = 6.6949 < 8.7034] w=0.2684 to align
# Constraint # added constraint: constraint((T0378)T48.CB, (T0378)F72.CB) [> 3.3529 = 5.5882 < 7.2647] w=0.2682 to align
# Constraint # added constraint: constraint((T0378)E205.CB, (T0378)G232.CA) [> 4.3416 = 7.2360 < 9.4068] w=0.2669 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)V201.CB) [> 3.6069 = 6.0116 < 7.8150] w=0.2652 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)A136.CB) [> 3.7351 = 6.2252 < 8.0927] w=0.2636 to align
# Constraint # added constraint: constraint((T0378)T133.CB, (T0378)L159.CB) [> 3.5504 = 5.9173 < 7.6925] w=0.2627 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)R127.CB) [> 4.1191 = 6.8651 < 8.9246] w=0.2600 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)G178.CA) [> 3.3335 = 5.5558 < 7.2225] w=0.2580 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)Y177.CB) [> 4.4155 = 7.3592 < 9.5670] w=0.2580 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)F180.CB) [> 3.2527 = 5.4212 < 7.0476] w=0.2548 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)F169.CB) [> 4.1918 = 6.9862 < 9.0821] w=0.2522 to align
# Constraint # added constraint: constraint((T0378)G134.CA, (T0378)P158.CB) [> 3.8239 = 6.3732 < 8.2851] w=0.2519 to align
# Constraint # added constraint: constraint((T0378)G112.CA, (T0378)V143.CB) [> 3.6972 = 6.1619 < 8.0105] w=0.2501 to align
# Constraint # added constraint: constraint((T0378)G112.CA, (T0378)A240.CB) [> 4.4942 = 7.4903 < 9.7374] w=0.2501 to align
# Constraint # added constraint: constraint((T0378)T116.CB, (T0378)A244.CB) [> 4.6917 = 7.8196 < 10.1654] w=0.2501 to align
# Constraint # added constraint: constraint((T0378)W123.CB, (T0378)C247.CB) [> 4.7291 = 7.8818 < 10.2464] w=0.2501 to align
# Constraint # added constraint: constraint((T0378)N193.CB, (T0378)R253.CB) [> 4.2989 = 7.1649 < 9.3143] w=0.2501 to align
# Constraint # added constraint: constraint((T0378)F194.CB, (T0378)R253.CB) [> 3.1003 = 5.1671 < 6.7172] w=0.2501 to align
# Constraint # added constraint: constraint((T0378)L221.CB, (T0378)L246.CB) [> 4.3808 = 7.3013 < 9.4917] w=0.2501 to align
# Constraint # added constraint: constraint((T0378)N113.CB, (T0378)E205.CB) [> 3.8715 = 6.4525 < 8.3882] w=0.2501 to align
# Constraint # added constraint: constraint((T0378)V163.CB, (T0378)V213.CB) [> 3.6878 = 6.1463 < 7.9902] w=0.2493 to align
# Constraint # added constraint: constraint((T0378)G134.CA, (T0378)S204.CB) [> 4.2041 = 7.0069 < 9.1089] w=0.2491 to align
# Constraint # added constraint: constraint((T0378)G134.CA, (T0378)S210.CB) [> 3.8935 = 6.4892 < 8.4359] w=0.2491 to align
# Constraint # added constraint: constraint((T0378)S135.CB, (T0378)G206.CA) [> 3.8048 = 6.3414 < 8.2438] w=0.2491 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)T222.CB) [> 3.6951 = 6.1585 < 8.0060] w=0.2491 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)I223.CB) [> 3.5014 = 5.8356 < 7.5863] w=0.2491 to align
# Constraint # added constraint: constraint((T0378)E99.CB, (T0378)P197.CB) [> 3.3588 = 5.5981 < 7.2775] w=0.2491 to align
# Constraint # added constraint: constraint((T0378)M36.CB, (T0378)A86.CB) [> 3.9669 = 6.6116 < 8.5950] w=0.2490 to align
# Constraint # added constraint: constraint((T0378)V176.CB, (T0378)L221.CB) [> 3.4439 = 5.7399 < 7.4619] w=0.2489 to align
# Constraint # added constraint: constraint((T0378)G208.CA, (T0378)V239.CB) [> 3.8889 = 6.4815 < 8.4259] w=0.2486 to align
# Constraint # added constraint: constraint((T0378)W123.CB, (T0378)A244.CB) [> 4.4962 = 7.4937 < 9.7418] w=0.2485 to align
# Constraint # added constraint: constraint((T0378)A24.CB, (T0378)L90.CB) [> 3.8287 = 6.3812 < 8.2956] w=0.2476 to align
# Constraint # added constraint: constraint((T0378)V33.CB, (T0378)M85.CB) [> 4.3248 = 7.2080 < 9.3704] w=0.2476 to align
# Constraint # added constraint: constraint((T0378)R41.CB, (T0378)F88.CB) [> 3.2856 = 5.4759 < 7.1187] w=0.2476 to align
# Constraint # added constraint: constraint((T0378)C42.CB, (T0378)A86.CB) [> 2.8556 = 4.7593 < 6.1870] w=0.2476 to align
# Constraint # added constraint: constraint((T0378)S76.CB, (T0378)M85.CB) [> 3.4282 = 5.7137 < 7.4278] w=0.2476 to align
# Constraint # added constraint: constraint((T0378)V201.CB, (T0378)L221.CB) [> 3.9204 = 6.5341 < 8.4943] w=0.2472 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)S147.CB) [> 3.7038 = 6.1730 < 8.0249] w=0.2449 to align
# Constraint # added constraint: constraint((T0378)I174.CB, (T0378)E196.CB) [> 3.0394 = 5.0656 < 6.5853] w=0.2433 to align
# Constraint # added constraint: constraint((T0378)R127.CB, (T0378)I174.CB) [> 3.6607 = 6.1011 < 7.9314] w=0.2431 to align
# Constraint # added constraint: constraint((T0378)R127.CB, (T0378)P175.CB) [> 3.4988 = 5.8313 < 7.5807] w=0.2431 to align
# Constraint # added constraint: constraint((T0378)C42.CB, (T0378)A61.CB) [> 3.0159 = 5.0265 < 6.5345] w=0.2425 to align
# Constraint # added constraint: constraint((T0378)M44.CB, (T0378)A61.CB) [> 4.3088 = 7.1814 < 9.3358] w=0.2424 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)L181.CB) [> 3.3645 = 5.6076 < 7.2898] w=0.2398 to align
# Constraint # added constraint: constraint((T0378)V129.CB, (T0378)F169.CB) [> 3.1510 = 5.2517 < 6.8272] w=0.2390 to align
# Constraint # added constraint: constraint((T0378)T133.CB, (T0378)V143.CB) [> 3.3485 = 5.5808 < 7.2551] w=0.2373 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)V201.CB) [> 4.5620 = 7.6033 < 9.8843] w=0.2350 to align
# Constraint # added constraint: constraint((T0378)F139.CB, (T0378)P156.CB) [> 3.7802 = 6.3003 < 8.1904] w=0.2346 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)L202.CB) [> 3.0558 = 5.0929 < 6.6208] w=0.2341 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)V176.CB) [> 3.3692 = 5.6154 < 7.3000] w=0.2340 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)P175.CB) [> 3.6253 = 6.0422 < 7.8548] w=0.2340 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)G203.CA) [> 3.9309 = 6.5515 < 8.5169] w=0.2337 to align
# Constraint # added constraint: constraint((T0378)G173.CA, (T0378)P197.CB) [> 3.3716 = 5.6193 < 7.3051] w=0.2315 to align
# Constraint # added constraint: constraint((T0378)V114.CB, (T0378)F139.CB) [> 3.9822 = 6.6369 < 8.6280] w=0.2292 to align
# Constraint # added constraint: constraint((T0378)A121.CB, (T0378)T243.CB) [> 4.1874 = 6.9791 < 9.0728] w=0.2292 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)V239.CB) [> 4.3910 = 7.3183 < 9.5138] w=0.2292 to align
# Constraint # added constraint: constraint((T0378)Y187.CB, (T0378)L246.CB) [> 3.2981 = 5.4969 < 7.1459] w=0.2290 to align
# Constraint # added constraint: constraint((T0378)L191.CB, (T0378)L221.CB) [> 4.3288 = 7.2147 < 9.3791] w=0.2287 to align
# Constraint # added constraint: constraint((T0378)E188.CB, (T0378)P224.CB) [> 3.5085 = 5.8476 < 7.6019] w=0.2285 to align
# Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)I223.CB) [> 3.5299 = 5.8831 < 7.6480] w=0.2283 to align
# Constraint # added constraint: constraint((T0378)L166.CB, (T0378)I199.CB) [> 4.2340 = 7.0567 < 9.1737] w=0.2279 to align
# Constraint # added constraint: constraint((T0378)V176.CB, (T0378)R220.CB) [> 3.5390 = 5.8983 < 7.6678] w=0.2278 to align
# Constraint # added constraint: constraint((T0378)L45.CB, (T0378)A61.CB) [> 3.5290 = 5.8817 < 7.6462] w=0.2273 to align
# Constraint # added constraint: constraint((T0378)L13.CB, (T0378)V87.CB) [> 4.1939 = 6.9898 < 9.0868] w=0.2268 to align
# Constraint # added constraint: constraint((T0378)R43.CB, (T0378)A86.CB) [> 4.2007 = 7.0012 < 9.1016] w=0.2268 to align
# Constraint # added constraint: constraint((T0378)A225.CB, (T0378)A242.CB) [> 3.9819 = 6.6365 < 8.6274] w=0.2268 to align
# Constraint # added constraint: constraint((T0378)V27.CB, (T0378)C42.CB) [> 4.0785 = 6.7975 < 8.8367] w=0.2265 to align
# Constraint # added constraint: constraint((T0378)L200.CB, (T0378)L221.CB) [> 3.6053 = 6.0088 < 7.8115] w=0.2259 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)A198.CB) [> 3.8981 = 6.4969 < 8.4459] w=0.2241 to align
# Constraint # added constraint: constraint((T0378)V33.CB, (T0378)C42.CB) [> 4.3193 = 7.1988 < 9.3584] w=0.2231 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)Y177.CB) [> 3.3379 = 5.5632 < 7.2321] w=0.2228 to align
# Constraint # added constraint: constraint((T0378)R43.CB, (T0378)A61.CB) [> 4.3483 = 7.2472 < 9.4213] w=0.2217 to align
# Constraint # added constraint: constraint((T0378)E28.CB, (T0378)A86.CB) [> 4.6649 = 7.7748 < 10.1072] w=0.2204 to align
# Constraint # added constraint: constraint((T0378)G134.CA, (T0378)L181.CB) [> 4.0596 = 6.7660 < 8.7958] w=0.2171 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)G178.CA) [> 3.8010 = 6.3351 < 8.2356] w=0.2154 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)P175.CB) [> 4.1263 = 6.8771 < 8.9403] w=0.2133 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)D182.CB) [> 3.9399 = 6.5665 < 8.5364] w=0.2113 to align
# Constraint # added constraint: constraint((T0378)R119.CB, (T0378)G149.CA) [> 4.6494 = 7.7490 < 10.0738] w=0.2083 to align
# Constraint # added constraint: constraint((T0378)T48.CB, (T0378)E65.CB) [> 4.3803 = 7.3005 < 9.4907] w=0.2083 to align
# Constraint # added constraint: constraint((T0378)E99.CB, (T0378)E196.CB) [> 3.6975 = 6.1625 < 8.0112] w=0.2075 to align
# Constraint # added constraint: constraint((T0378)G208.CA, (T0378)S236.CB) [> 4.5658 = 7.6096 < 9.8925] w=0.2070 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)I223.CB) [> 4.2235 = 7.0392 < 9.1510] w=0.2070 to align
# Constraint # added constraint: constraint((T0378)G183.CA, (T0378)P224.CB) [> 3.2106 = 5.3509 < 6.9562] w=0.2070 to align
# Constraint # added constraint: constraint((T0378)D110.CB, (T0378)A136.CB) [> 3.9244 = 6.5407 < 8.5029] w=0.2064 to align
# Constraint # added constraint: constraint((T0378)C42.CB, (T0378)V87.CB) [> 4.1879 = 6.9799 < 9.0738] w=0.2059 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)V144.CB) [> 3.8994 = 6.4991 < 8.4488] w=0.2050 to align
# Constraint # added constraint: constraint((T0378)I223.CB, (T0378)V239.CB) [> 3.9229 = 6.5382 < 8.4997] w=0.2047 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)V176.CB) [> 4.4518 = 7.4197 < 9.6456] w=0.2030 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)G178.CA) [> 4.1335 = 6.8892 < 8.9560] w=0.2002 to align
# Constraint # added constraint: constraint((T0378)L37.CB, (T0378)S56.CB) [> 3.7201 = 6.2001 < 8.0602] w=0.1989 to align
# Constraint # added constraint: constraint((T0378)D122.CB, (T0378)Q172.CB) [> 3.3461 = 5.5769 < 7.2500] w=0.1989 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)L202.CB) [> 3.8717 = 6.4528 < 8.3887] w=0.1987 to align
# Constraint # added constraint: constraint((T0378)G134.CA, (T0378)D182.CB) [> 3.5320 = 5.8867 < 7.6528] w=0.1974 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)T116.CB) [> 3.8147 = 6.3579 < 8.2653] w=0.1941 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)P224.CB) [> 4.4462 = 7.4104 < 9.6335] w=0.1890 to align
# Constraint # added constraint: constraint((T0378)A26.CB, (T0378)I75.CB) [> 3.8881 = 6.4801 < 8.4241] w=0.1876 to align
# Constraint # added constraint: constraint((T0378)K31.CB, (T0378)G149.CA) [> 3.8807 = 6.4678 < 8.4081] w=0.1876 to align
# Constraint # added constraint: constraint((T0378)L32.CB, (T0378)V144.CB) [> 4.1150 = 6.8583 < 8.9157] w=0.1876 to align
# Constraint # added constraint: constraint((T0378)L32.CB, (T0378)G149.CA) [> 2.8962 = 4.8270 < 6.2751] w=0.1876 to align
# Constraint # added constraint: constraint((T0378)E35.CB, (T0378)G149.CA) [> 2.7307 = 4.5512 < 5.9165] w=0.1876 to align
# Constraint # added constraint: constraint((T0378)F39.CB, (T0378)A152.CB) [> 2.9689 = 4.9482 < 6.4326] w=0.1876 to align
# Constraint # added constraint: constraint((T0378)F39.CB, (T0378)R153.CB) [> 2.9778 = 4.9630 < 6.4520] w=0.1876 to align
# Constraint # added constraint: constraint((T0378)T116.CB, (T0378)S147.CB) [> 4.5161 = 7.5269 < 9.7850] w=0.1876 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)E235.CB) [> 4.0280 = 6.7133 < 8.7273] w=0.1876 to align
# Constraint # added constraint: constraint((T0378)T157.CB, (T0378)Y168.CB) [> 3.7860 = 6.3100 < 8.2029] w=0.1875 to align
# Constraint # added constraint: constraint((T0378)P30.CB, (T0378)Q82.CB) [> 3.7845 = 6.3075 < 8.1997] w=0.1875 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)Y168.CB) [> 4.2864 = 7.1440 < 9.2872] w=0.1871 to align
# Constraint # added constraint: constraint((T0378)L166.CB, (T0378)I217.CB) [> 3.8113 = 6.3522 < 8.2578] w=0.1868 to align
# Constraint # added constraint: constraint((T0378)G134.CA, (T0378)G208.CA) [> 4.1986 = 6.9977 < 9.0970] w=0.1867 to align
# Constraint # added constraint: constraint((T0378)Q23.CB, (T0378)L90.CB) [> 3.0564 = 5.0940 < 6.6222] w=0.1862 to align
# Constraint # added constraint: constraint((T0378)P175.CB, (T0378)T195.CB) [> 4.0023 = 6.6705 < 8.6716] w=0.1853 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)A240.CB) [> 4.0903 = 6.8171 < 8.8623] w=0.1852 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)A244.CB) [> 4.3845 = 7.3075 < 9.4998] w=0.1852 to align
# Constraint # added constraint: constraint((T0378)T48.CB, (T0378)Q82.CB) [> 4.5143 = 7.5239 < 9.7810] w=0.1851 to align
# Constraint # added constraint: constraint((T0378)E28.CB, (T0378)Q78.CB) [> 4.0115 = 6.6858 < 8.6915] w=0.1851 to align
# Constraint # added constraint: constraint((T0378)A26.CB, (T0378)S76.CB) [> 3.7050 = 6.1749 < 8.0274] w=0.1851 to align
# Constraint # added constraint: constraint((T0378)F25.CB, (T0378)D89.CB) [> 2.8883 = 4.8138 < 6.2579] w=0.1851 to align
# Constraint # added constraint: constraint((T0378)R11.CB, (T0378)I75.CB) [> 2.9550 = 4.9249 < 6.4024] w=0.1851 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)L202.CB) [> 4.2183 = 7.0305 < 9.1397] w=0.1851 to align
# Constraint # added constraint: constraint((T0378)I199.CB, (T0378)L221.CB) [> 3.9380 = 6.5633 < 8.5323] w=0.1847 to align
# Constraint # added constraint: constraint((T0378)I199.CB, (T0378)R220.CB) [> 3.2496 = 5.4160 < 7.0408] w=0.1842 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)L181.CB) [> 3.7391 = 6.2318 < 8.1013] w=0.1837 to align
# Constraint # added constraint: constraint((T0378)I126.CB, (T0378)V176.CB) [> 3.3844 = 5.6407 < 7.3330] w=0.1832 to align
# Constraint # added constraint: constraint((T0378)L200.CB, (T0378)R220.CB) [> 4.0357 = 6.7261 < 8.7439] w=0.1829 to align
# Constraint # added constraint: constraint((T0378)A24.CB, (T0378)V87.CB) [> 3.4628 = 5.7713 < 7.5027] w=0.1813 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)A179.CB) [> 3.8910 = 6.4850 < 8.4304] w=0.1812 to align
# Constraint # added constraint: constraint((T0378)A24.CB, (T0378)F88.CB) [> 3.8895 = 6.4825 < 8.4272] w=0.1812 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)A179.CB) [> 3.8523 = 6.4205 < 8.3466] w=0.1790 to align
# Constraint # added constraint: constraint((T0378)V230.CB, (T0378)V239.CB) [> 4.1515 = 6.9191 < 8.9948] w=0.1735 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)Y177.CB) [> 3.8716 = 6.4527 < 8.3886] w=0.1718 to align
# Constraint # added constraint: constraint((T0378)F25.CB, (T0378)L90.CB) [> 3.5762 = 5.9604 < 7.7485] w=0.1668 to align
# Constraint # added constraint: constraint((T0378)F139.CB, (T0378)L151.CB) [> 3.6965 = 6.1609 < 8.0091] w=0.1668 to align
# Constraint # added constraint: constraint((T0378)Y187.CB, (T0378)I245.CB) [> 4.3744 = 7.2907 < 9.4778] w=0.1668 to align
# Constraint # added constraint: constraint((T0378)Y187.CB, (T0378)E249.CB) [> 3.3170 = 5.5283 < 7.1868] w=0.1668 to align
# Constraint # added constraint: constraint((T0378)G125.CA, (T0378)C247.CB) [> 4.4224 = 7.3706 < 9.5819] w=0.1666 to align
# Constraint # added constraint: constraint((T0378)R119.CB, (T0378)A240.CB) [> 4.5128 = 7.5213 < 9.7776] w=0.1665 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)A179.CB) [> 2.8606 = 4.7677 < 6.1981] w=0.1664 to align
# Constraint # added constraint: constraint((T0378)P30.CB, (T0378)L52.CB) [> 3.5103 = 5.8504 < 7.6056] w=0.1662 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)I223.CB) [> 4.5168 = 7.5280 < 9.7864] w=0.1662 to align
# Constraint # added constraint: constraint((T0378)S204.CB, (T0378)G232.CA) [> 4.3621 = 7.2702 < 9.4512] w=0.1651 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)L200.CB) [> 3.9769 = 6.6282 < 8.6166] w=0.1649 to align
# Constraint # added constraint: constraint((T0378)T120.CB, (T0378)I241.CB) [> 3.6671 = 6.1118 < 7.9454] w=0.1649 to align
# Constraint # added constraint: constraint((T0378)L202.CB, (T0378)S236.CB) [> 2.9589 = 4.9315 < 6.4110] w=0.1644 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)A179.CB) [> 4.2741 = 7.1235 < 9.2606] w=0.1643 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)Y177.CB) [> 3.8730 = 6.4549 < 8.3914] w=0.1643 to align
# Constraint # added constraint: constraint((T0378)S69.CB, (T0378)P81.CB) [> 3.0032 = 5.0054 < 6.5070] w=0.1642 to align
# Constraint # added constraint: constraint((T0378)L10.CB, (T0378)V46.CB) [> 3.5558 = 5.9263 < 7.7042] w=0.1642 to align
# Constraint # added constraint: constraint((T0378)E205.CB, (T0378)E235.CB) [> 3.5835 = 5.9725 < 7.7642] w=0.1633 to align
# Constraint # added constraint: constraint((T0378)E205.CB, (T0378)H233.CB) [> 2.6271 = 4.3786 < 5.6921] w=0.1633 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)A121.CB) [> 4.2823 = 7.1372 < 9.2784] w=0.1630 to align
# Constraint # added constraint: constraint((T0378)T133.CB, (T0378)F180.CB) [> 3.2139 = 5.3565 < 6.9635] w=0.1588 to align
# Constraint # added constraint: constraint((T0378)R127.CB, (T0378)V176.CB) [> 4.3158 = 7.1930 < 9.3510] w=0.1586 to align
# Constraint # added constraint: constraint((T0378)L37.CB, (T0378)V55.CB) [> 3.9209 = 6.5349 < 8.4953] w=0.1582 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)I199.CB) [> 4.4896 = 7.4827 < 9.7276] w=0.1579 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)F180.CB) [> 3.6609 = 6.1016 < 7.9320] w=0.1575 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)F180.CB) [> 3.7471 = 6.2452 < 8.1187] w=0.1574 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)V201.CB) [> 3.7640 = 6.2733 < 8.1554] w=0.1572 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)L200.CB) [> 3.9319 = 6.5531 < 8.5191] w=0.1563 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)F180.CB) [> 3.4961 = 5.8269 < 7.5749] w=0.1547 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)A179.CB) [> 3.7581 = 6.2635 < 8.1425] w=0.1547 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)G203.CA) [> 3.8662 = 6.4436 < 8.3767] w=0.1517 to align
# Constraint # added constraint: constraint((T0378)Q109.CB, (T0378)T133.CB) [> 3.5552 = 5.9254 < 7.7030] w=0.1511 to align
# Constraint # added constraint: constraint((T0378)P30.CB, (T0378)M51.CB) [> 3.0096 = 5.0161 < 6.5209] w=0.1510 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)V230.CB) [> 4.5188 = 7.5314 < 9.7908] w=0.1487 to align
# Constraint # added constraint: constraint((T0378)V138.CB, (T0378)P156.CB) [> 3.6989 = 6.1649 < 8.0143] w=0.1459 to align
# Constraint # added constraint: constraint((T0378)V138.CB, (T0378)L151.CB) [> 3.6979 = 6.1632 < 8.0121] w=0.1459 to align
# Constraint # added constraint: constraint((T0378)V98.CB, (T0378)H128.CB) [> 3.1530 = 5.2550 < 6.8315] w=0.1459 to align
# Constraint # added constraint: constraint((T0378)V114.CB, (T0378)P156.CB) [> 4.5836 = 7.6393 < 9.9311] w=0.1453 to align
# Constraint # added constraint: constraint((T0378)A26.CB, (T0378)V46.CB) [> 3.5370 = 5.8950 < 7.6635] w=0.1453 to align
# Constraint # added constraint: constraint((T0378)L191.CB, (T0378)I223.CB) [> 4.2367 = 7.0612 < 9.1796] w=0.1452 to align
# Constraint # added constraint: constraint((T0378)P175.CB, (T0378)L221.CB) [> 4.0718 = 6.7863 < 8.8222] w=0.1451 to align
# Constraint # added constraint: constraint((T0378)L13.CB, (T0378)E22.CB) [> 4.2174 = 7.0290 < 9.1378] w=0.1450 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)I199.CB) [> 4.2158 = 7.0263 < 9.1342] w=0.1447 to align
# Constraint # added constraint: constraint((T0378)G206.CA, (T0378)S236.CB) [> 3.9220 = 6.5367 < 8.4976] w=0.1444 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)T120.CB) [> 3.7835 = 6.3059 < 8.1976] w=0.1443 to align
# Constraint # added constraint: constraint((T0378)A225.CB, (T0378)L246.CB) [> 3.7336 = 6.2226 < 8.0894] w=0.1439 to align
# Constraint # added constraint: constraint((T0378)I223.CB, (T0378)T243.CB) [> 4.2326 = 7.0544 < 9.1707] w=0.1438 to align
# Constraint # added constraint: constraint((T0378)T120.CB, (T0378)L237.CB) [> 3.8938 = 6.4896 < 8.4365] w=0.1437 to align
# Constraint # added constraint: constraint((T0378)A121.CB, (T0378)V176.CB) [> 3.7713 = 6.2856 < 8.1713] w=0.1436 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)L200.CB) [> 3.2450 = 5.4084 < 7.0309] w=0.1434 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)A198.CB) [> 3.1755 = 5.2926 < 6.8803] w=0.1434 to align
# Constraint # added constraint: constraint((T0378)L10.CB, (T0378)L66.CB) [> 3.7653 = 6.2755 < 8.1582] w=0.1434 to align
# Constraint # added constraint: constraint((T0378)I7.CB, (T0378)L66.CB) [> 3.4269 = 5.7115 < 7.4250] w=0.1434 to align
# Constraint # added constraint: constraint((T0378)L202.CB, (T0378)L221.CB) [> 3.7866 = 6.3109 < 8.2042] w=0.1424 to align
# Constraint # added constraint: constraint((T0378)T48.CB, (T0378)D71.CB) [> 4.5479 = 7.5798 < 9.8537] w=0.1421 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)G203.CA) [> 4.6259 = 7.7098 < 10.0227] w=0.1401 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)T133.CB) [> 4.5052 = 7.5087 < 9.7614] w=0.1388 to align
# Constraint # added constraint: constraint((T0378)G112.CA, (T0378)A136.CB) [> 3.5469 = 5.9115 < 7.6850] w=0.1385 to align
# Constraint # added constraint: constraint((T0378)G34.CA, (T0378)L84.CB) [> 4.6407 = 7.7346 < 10.0550] w=0.1371 to align
# Constraint # added constraint: constraint((T0378)T133.CB, (T0378)A179.CB) [> 4.2608 = 7.1013 < 9.2317] w=0.1354 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)A179.CB) [> 4.2811 = 7.1352 < 9.2757] w=0.1354 to align
# Constraint # added constraint: constraint((T0378)G206.CA, (T0378)E235.CB) [> 3.0231 = 5.0384 < 6.5500] w=0.1347 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)A198.CB) [> 4.5948 = 7.6580 < 9.9554] w=0.1347 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)W130.CB) [> 3.2618 = 5.4364 < 7.0673] w=0.1342 to align
# Constraint # added constraint: constraint((T0378)V63.CB, (T0378)A86.CB) [> 3.4293 = 5.7155 < 7.4301] w=0.1330 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)F180.CB) [> 3.7301 = 6.2169 < 8.0819] w=0.1319 to align
# Constraint # added constraint: constraint((T0378)D110.CB, (T0378)K142.CB) [> 4.7313 = 7.8855 < 10.2511] w=0.1271 to align
# Constraint # added constraint: constraint((T0378)G29.CA, (T0378)T80.CB) [> 4.4834 = 7.4724 < 9.7141] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)K31.CB, (T0378)M148.CB) [> 3.5369 = 5.8949 < 7.6634] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)L32.CB, (T0378)M148.CB) [> 4.3895 = 7.3157 < 9.5105] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)P38.CB, (T0378)R153.CB) [> 4.4247 = 7.3745 < 9.5868] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)E28.CB, (T0378)P81.CB) [> 3.2854 = 5.4756 < 7.1183] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)V27.CB, (T0378)V144.CB) [> 3.7955 = 6.3258 < 8.2235] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)F25.CB, (T0378)V144.CB) [> 4.4944 = 7.4907 < 9.7379] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)F25.CB, (T0378)F139.CB) [> 2.4969 = 4.1615 < 5.4100] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)L13.CB, (T0378)A26.CB) [> 3.2679 = 5.4466 < 7.0805] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)L10.CB, (T0378)V87.CB) [> 3.9539 = 6.5898 < 8.5668] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)L10.CB, (T0378)A26.CB) [> 3.9862 = 6.6437 < 8.6368] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)F194.CB, (T0378)L246.CB) [> 4.6964 = 7.8273 < 10.1754] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)R170.CB, (T0378)T218.CB) [> 4.3083 = 7.1806 < 9.3347] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)V114.CB, (T0378)A240.CB) [> 4.7319 = 7.8865 < 10.2525] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)N113.CB, (T0378)A146.CB) [> 4.5853 = 7.6422 < 9.9349] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)G112.CA, (T0378)Q145.CB) [> 4.6630 = 7.7716 < 10.1031] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)Q109.CB, (T0378)G134.CA) [> 4.3920 = 7.3200 < 9.5159] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)L246.CB) [> 4.7219 = 7.8698 < 10.2308] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)V98.CB, (T0378)Q155.CB) [> 3.4351 = 5.7252 < 7.4427] w=0.1251 to align
# Constraint # added constraint: constraint((T0378)Y40.CB, (T0378)A152.CB) [> 3.9731 = 6.6217 < 8.6083] w=0.1250 to align
# Constraint # added constraint: constraint((T0378)L13.CB, (T0378)F25.CB) [> 3.5610 = 5.9350 < 7.7155] w=0.1250 to align
# Constraint # added constraint: constraint((T0378)V144.CB, (T0378)R153.CB) [> 3.7333 = 6.2222 < 8.0889] w=0.1247 to align
# Constraint # added constraint: constraint((T0378)W123.CB, (T0378)M148.CB) [> 2.8926 = 4.8210 < 6.2672] w=0.1247 to align
# Constraint # added constraint: constraint((T0378)V27.CB, (T0378)L45.CB) [> 3.1021 = 5.1701 < 6.7211] w=0.1244 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)P224.CB) [> 4.4425 = 7.4041 < 9.6254] w=0.1244 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)V239.CB) [> 4.1058 = 6.8430 < 8.8959] w=0.1243 to align
# Constraint # added constraint: constraint((T0378)L200.CB, (T0378)A240.CB) [> 4.3600 = 7.2666 < 9.4466] w=0.1243 to align
# Constraint # added constraint: constraint((T0378)R14.CB, (T0378)A26.CB) [> 4.1735 = 6.9559 < 9.0426] w=0.1242 to align
# Constraint # added constraint: constraint((T0378)L45.CB, (T0378)S56.CB) [> 3.5889 = 5.9815 < 7.7760] w=0.1241 to align
# Constraint # added constraint: constraint((T0378)V33.CB, (T0378)V46.CB) [> 4.0666 = 6.7777 < 8.8110] w=0.1241 to align
# Constraint # added constraint: constraint((T0378)Q6.CB, (T0378)V64.CB) [> 4.4187 = 7.3645 < 9.5739] w=0.1234 to align
# Constraint # added constraint: constraint((T0378)L37.CB, (T0378)A61.CB) [> 3.8171 = 6.3619 < 8.2705] w=0.1232 to align
# Constraint # added constraint: constraint((T0378)T116.CB, (T0378)L237.CB) [> 3.3426 = 5.5710 < 7.2424] w=0.1230 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)A198.CB) [> 3.6091 = 6.0152 < 7.8198] w=0.1229 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)I199.CB) [> 3.2065 = 5.3442 < 6.9475] w=0.1229 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)L181.CB) [> 3.7576 = 6.2626 < 8.1414] w=0.1229 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)A179.CB) [> 4.1670 = 6.9449 < 9.0284] w=0.1229 to align
# Constraint # added constraint: constraint((T0378)Q78.CB, (T0378)A244.CB) [> 4.6585 = 7.7642 < 10.0935] w=0.1229 to align
# Constraint # added constraint: constraint((T0378)S76.CB, (T0378)A244.CB) [> 3.2384 = 5.3973 < 7.0166] w=0.1229 to align
# Constraint # added constraint: constraint((T0378)S76.CB, (T0378)I241.CB) [> 3.7860 = 6.3100 < 8.2030] w=0.1229 to align
# Constraint # added constraint: constraint((T0378)S76.CB, (T0378)A240.CB) [> 2.9761 = 4.9601 < 6.4482] w=0.1229 to align
# Constraint # added constraint: constraint((T0378)I75.CB, (T0378)I241.CB) [> 3.2308 = 5.3847 < 7.0001] w=0.1229 to align
# Constraint # added constraint: constraint((T0378)R207.CB, (T0378)V239.CB) [> 3.3249 = 5.5414 < 7.2038] w=0.1229 to align
# Constraint # added constraint: constraint((T0378)R207.CB, (T0378)E235.CB) [> 3.6102 = 6.0171 < 7.8222] w=0.1229 to align
# Constraint # added constraint: constraint((T0378)L202.CB, (T0378)I223.CB) [> 3.4325 = 5.7209 < 7.4372] w=0.1229 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)V201.CB) [> 3.2254 = 5.3757 < 6.9884] w=0.1229 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)L200.CB) [> 3.3983 = 5.6638 < 7.3630] w=0.1229 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)I199.CB) [> 4.1525 = 6.9208 < 8.9971] w=0.1229 to align
# Constraint # added constraint: constraint((T0378)E28.CB, (T0378)K73.CB) [> 4.3639 = 7.2732 < 9.4552] w=0.1226 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)S140.CB) [> 2.7939 = 4.6564 < 6.0534] w=0.1224 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)V176.CB) [> 3.7241 = 6.2067 < 8.0688] w=0.1208 to align
# Constraint # added constraint: constraint((T0378)T133.CB, (T0378)G178.CA) [> 4.0539 = 6.7565 < 8.7834] w=0.1203 to align
# Constraint # added constraint: constraint((T0378)C42.CB, (T0378)H59.CB) [> 4.0439 = 6.7398 < 8.7618] w=0.1169 to align
# Constraint # added constraint: constraint((T0378)G34.CA, (T0378)V55.CB) [> 3.8014 = 6.3356 < 8.2362] w=0.1165 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)L200.CB) [> 4.3666 = 7.2777 < 9.4610] w=0.1153 to align
# Constraint # added constraint: constraint((T0378)V64.CB, (T0378)M85.CB) [> 3.1716 = 5.2860 < 6.8717] w=0.1123 to align
# Constraint # added constraint: constraint((T0378)V114.CB, (T0378)S135.CB) [> 3.7760 = 6.2933 < 8.1813] w=0.1063 to align
# Constraint # added constraint: constraint((T0378)Y40.CB, (T0378)P91.CB) [> 4.0646 = 6.7743 < 8.8066] w=0.1042 to align
# Constraint # added constraint: constraint((T0378)G29.CA, (T0378)P81.CB) [> 3.5046 = 5.8410 < 7.5933] w=0.1041 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)T243.CB) [> 4.4586 = 7.4310 < 9.6603] w=0.1040 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)E205.CB) [> 3.9743 = 6.6238 < 8.6110] w=0.1039 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)P224.CB) [> 4.5514 = 7.5856 < 9.8613] w=0.1038 to align
# Constraint # added constraint: constraint((T0378)G29.CA, (T0378)L45.CB) [> 4.0564 = 6.7606 < 8.7888] w=0.1037 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L90.CB) [> 3.8521 = 6.4202 < 8.3462] w=0.1037 to align
# Constraint # added constraint: constraint((T0378)S204.CB, (T0378)I223.CB) [> 3.8802 = 6.4671 < 8.4072] w=0.1024 to align
# Constraint # added constraint: constraint((T0378)L221.CB, (T0378)T243.CB) [> 3.4469 = 5.7449 < 7.4684] w=0.1024 to align
# Constraint # added constraint: constraint((T0378)T116.CB, (T0378)I241.CB) [> 4.3191 = 7.1985 < 9.3581] w=0.1023 to align
# Constraint # added constraint: constraint((T0378)M36.CB, (T0378)L45.CB) [> 3.8880 = 6.4800 < 8.4240] w=0.1017 to align
# Constraint # added constraint: constraint((T0378)G208.CA, (T0378)N238.CB) [> 2.4493 = 4.0822 < 5.3068] w=0.1014 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)A198.CB) [> 3.9554 = 6.5923 < 8.5700] w=0.1001 to align
# Constraint # added constraint: constraint((T0378)T133.CB, (T0378)L181.CB) [> 3.5524 = 5.9206 < 7.6968] w=0.0960 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)G178.CA) [> 3.7773 = 6.2955 < 8.1841] w=0.0960 to align
# Constraint # added constraint: constraint((T0378)L202.CB, (T0378)E235.CB) [> 3.4744 = 5.7907 < 7.5279] w=0.0947 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)V154.CB) [> 3.8771 = 6.4619 < 8.4004] w=0.0847 to align
# Constraint # added constraint: constraint((T0378)A225.CB, (T0378)T234.CB) [> 3.4867 = 5.8112 < 7.5545] w=0.0834 to align
# Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)L246.CB) [> 4.5211 = 7.5352 < 9.7957] w=0.0833 to align
# Constraint # added constraint: constraint((T0378)T133.CB, (T0378)I209.CB) [> 4.2210 = 7.0350 < 9.1455] w=0.0831 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)E205.CB) [> 3.8046 = 6.3410 < 8.2433] w=0.0831 to align
# Constraint # added constraint: constraint((T0378)V230.CB, (T0378)A242.CB) [> 3.2011 = 5.3351 < 6.9357] w=0.0830 to align
# Constraint # added constraint: constraint((T0378)E28.CB, (T0378)V46.CB) [> 3.4002 = 5.6670 < 7.3670] w=0.0829 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)T243.CB) [> 3.5899 = 5.9832 < 7.7782] w=0.0829 to align
# Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)V239.CB) [> 4.7209 = 7.8681 < 10.2286] w=0.0829 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)E235.CB) [> 3.7849 = 6.3082 < 8.2007] w=0.0829 to align
# Constraint # added constraint: constraint((T0378)A198.CB, (T0378)T243.CB) [> 3.6250 = 6.0416 < 7.8541] w=0.0829 to align
# Constraint # added constraint: constraint((T0378)L200.CB, (T0378)V239.CB) [> 3.5693 = 5.9488 < 7.7335] w=0.0829 to align
# Constraint # added constraint: constraint((T0378)A225.CB, (T0378)N238.CB) [> 3.8679 = 6.4466 < 8.3805] w=0.0829 to align
# Constraint # added constraint: constraint((T0378)S226.CB, (T0378)N238.CB) [> 4.7618 = 7.9363 < 10.3171] w=0.0829 to align
# Constraint # added constraint: constraint((T0378)L52.CB, (T0378)P83.CB) [> 3.2447 = 5.4079 < 7.0302] w=0.0828 to align
# Constraint # added constraint: constraint((T0378)M44.CB, (T0378)F88.CB) [> 4.2265 = 7.0442 < 9.1575] w=0.0828 to align
# Constraint # added constraint: constraint((T0378)V27.CB, (T0378)V46.CB) [> 3.7465 = 6.2441 < 8.1174] w=0.0828 to align
# Constraint # added constraint: constraint((T0378)A50.CB, (T0378)P83.CB) [> 3.4744 = 5.7907 < 7.5280] w=0.0825 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)F139.CB) [> 4.0197 = 6.6994 < 8.7093] w=0.0822 to align
# Constraint # added constraint: constraint((T0378)M51.CB, (T0378)P83.CB) [> 3.2606 = 5.4343 < 7.0646] w=0.0822 to align
# Constraint # added constraint: constraint((T0378)L32.CB, (T0378)I241.CB) [> 3.3081 = 5.5135 < 7.1675] w=0.0819 to align
# Constraint # added constraint: constraint((T0378)G29.CA, (T0378)A242.CB) [> 4.2997 = 7.1662 < 9.3160] w=0.0819 to align
# Constraint # added constraint: constraint((T0378)G29.CA, (T0378)N238.CB) [> 3.8803 = 6.4671 < 8.4073] w=0.0819 to align
# Constraint # added constraint: constraint((T0378)Y18.CB, (T0378)I241.CB) [> 4.7460 = 7.9100 < 10.2830] w=0.0819 to align
# Constraint # added constraint: constraint((T0378)Y18.CB, (T0378)L237.CB) [> 3.7443 = 6.2405 < 8.1126] w=0.0819 to align
# Constraint # added constraint: constraint((T0378)Y18.CB, (T0378)V33.CB) [> 2.7953 = 4.6588 < 6.0565] w=0.0819 to align
# Constraint # added constraint: constraint((T0378)Y18.CB, (T0378)L32.CB) [> 4.6429 = 7.7381 < 10.0595] w=0.0819 to align
# Constraint # added constraint: constraint((T0378)I7.CB, (T0378)L52.CB) [> 4.4777 = 7.4628 < 9.7017] w=0.0819 to align
# Constraint # added constraint: constraint((T0378)G203.CA, (T0378)I223.CB) [> 3.5036 = 5.8393 < 7.5911] w=0.0819 to align
# Constraint # added constraint: constraint((T0378)F39.CB, (T0378)M51.CB) [> 3.8426 = 6.4042 < 8.3255] w=0.0819 to align
# Constraint # added constraint: constraint((T0378)L10.CB, (T0378)V64.CB) [> 3.2053 = 5.3421 < 6.9447] w=0.0817 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)Y177.CB) [> 4.2555 = 7.0924 < 9.2202] w=0.0809 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)L200.CB) [> 3.5867 = 5.9778 < 7.7711] w=0.0799 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)R127.CB) [> 4.5175 = 7.5291 < 9.7879] w=0.0792 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)D106.CB) [> 3.0787 = 5.1312 < 6.6705] w=0.0779 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)P175.CB) [> 4.5062 = 7.5104 < 9.7635] w=0.0774 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)F180.CB) [> 4.3215 = 7.2025 < 9.3632] w=0.0773 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)W130.CB) [> 3.7125 = 6.1874 < 8.0437] w=0.0772 to align
# Constraint # added constraint: constraint((T0378)P224.CB, (T0378)H233.CB) [> 3.9074 = 6.5124 < 8.4661] w=0.0764 to align
# Constraint # added constraint: constraint((T0378)T133.CB, (T0378)S204.CB) [> 3.3966 = 5.6610 < 7.3594] w=0.0742 to align
# Constraint # added constraint: constraint((T0378)T133.CB, (T0378)G203.CA) [> 3.7911 = 6.3186 < 8.2141] w=0.0742 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)G203.CA) [> 4.3647 = 7.2744 < 9.4568] w=0.0742 to align
# Constraint # added constraint: constraint((T0378)V63.CB, (T0378)M85.CB) [> 4.3445 = 7.2409 < 9.4131] w=0.0706 to align
# Constraint # added constraint: constraint((T0378)M36.CB, (T0378)G149.CA) [> 4.2527 = 7.0879 < 9.2142] w=0.0625 to align
# Constraint # added constraint: constraint((T0378)V33.CB, (T0378)M51.CB) [> 3.5566 = 5.9276 < 7.7059] w=0.0625 to align
# Constraint # added constraint: constraint((T0378)I7.CB, (T0378)R74.CB) [> 3.8118 = 6.3530 < 8.2589] w=0.0625 to align
# Constraint # added constraint: constraint((T0378)V27.CB, (T0378)V87.CB) [> 4.6523 = 7.7539 < 10.0801] w=0.0625 to align
# Constraint # added constraint: constraint((T0378)V27.CB, (T0378)A152.CB) [> 4.6190 = 7.6983 < 10.0078] w=0.0625 to align
# Constraint # added constraint: constraint((T0378)L32.CB, (T0378)Q145.CB) [> 4.2922 = 7.1537 < 9.2998] w=0.0625 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)R207.CB) [> 3.3749 = 5.6248 < 7.3123] w=0.0625 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)R207.CB) [> 2.6833 = 4.4722 < 5.8138] w=0.0625 to align
# Constraint # added constraint: constraint((T0378)V201.CB, (T0378)A214.CB) [> 4.5882 = 7.6470 < 9.9411] w=0.0625 to align
# Constraint # added constraint: constraint((T0378)E205.CB, (T0378)L237.CB) [> 3.8549 = 6.4249 < 8.3523] w=0.0625 to align
# Constraint # added constraint: constraint((T0378)E205.CB, (T0378)A242.CB) [> 4.4849 = 7.4748 < 9.7173] w=0.0625 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)R251.CB) [> 4.6278 = 7.7130 < 10.0269] w=0.0625 to align
# Constraint # added constraint: constraint((T0378)T116.CB, (T0378)N238.CB) [> 4.2132 = 7.0219 < 9.1285] w=0.0625 to align
# Constraint # added constraint: constraint((T0378)L118.CB, (T0378)M148.CB) [> 3.8111 = 6.3519 < 8.2574] w=0.0625 to align
# Constraint # added constraint: constraint((T0378)A86.CB, (T0378)R119.CB) [> 4.2973 = 7.1622 < 9.3109] w=0.0622 to align
# Constraint # added constraint: constraint((T0378)F88.CB, (T0378)V97.CB) [> 3.0856 = 5.1427 < 6.6856] w=0.0622 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)S229.CB) [> 4.7639 = 7.9398 < 10.3218] w=0.0620 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)A198.CB) [> 3.8855 = 6.4758 < 8.4185] w=0.0617 to align
# Constraint # added constraint: constraint((T0378)L2.CB, (T0378)P67.CB) [> 4.4654 = 7.4423 < 9.6750] w=0.0617 to align
# Constraint # added constraint: constraint((T0378)Y40.CB, (T0378)H59.CB) [> 3.2184 = 5.3640 < 6.9732] w=0.0616 to align
# Constraint # added constraint: constraint((T0378)S204.CB, (T0378)V230.CB) [> 2.8110 = 4.6849 < 6.0904] w=0.0614 to align
# Constraint # added constraint: constraint((T0378)E205.CB, (T0378)I223.CB) [> 3.1699 = 5.2831 < 6.8680] w=0.0614 to align
# Constraint # added constraint: constraint((T0378)A26.CB, (T0378)D89.CB) [> 4.7326 = 7.8876 < 10.2539] w=0.0614 to align
# Constraint # added constraint: constraint((T0378)V114.CB, (T0378)L237.CB) [> 4.7654 = 7.9423 < 10.3250] w=0.0609 to align
# Constraint # added constraint: constraint((T0378)E205.CB, (T0378)T234.CB) [> 3.5636 = 5.9393 < 7.7210] w=0.0609 to align
# Constraint # added constraint: constraint((T0378)A225.CB, (T0378)C247.CB) [> 4.5648 = 7.6079 < 9.8903] w=0.0609 to align
# Constraint # added constraint: constraint((T0378)R207.CB, (T0378)L237.CB) [> 3.7509 = 6.2515 < 8.1270] w=0.0605 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L105.CB) [> 4.5553 = 7.5922 < 9.8699] w=0.0594 to align
# Constraint # added constraint: constraint((T0378)R153.CB, (T0378)P175.CB) [> 3.6382 = 6.0636 < 7.8827] w=0.0591 to align
# Constraint # added constraint: constraint((T0378)R153.CB, (T0378)V176.CB) [> 4.6712 = 7.7853 < 10.1208] w=0.0591 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)Y177.CB) [> 4.7985 = 7.9975 < 10.3968] w=0.0586 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L104.CB) [> 3.1175 = 5.1958 < 6.7546] w=0.0585 to align
# Constraint # added constraint: constraint((T0378)L37.CB, (T0378)L101.CB) [> 4.0011 = 6.6686 < 8.6691] w=0.0585 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)Y177.CB) [> 4.5575 = 7.5958 < 9.8745] w=0.0584 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)S56.CB) [> 4.0003 = 6.6672 < 8.6673] w=0.0563 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)I223.CB) [> 3.7656 = 6.2761 < 8.1589] w=0.0529 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)L221.CB) [> 3.2644 = 5.4407 < 7.0729] w=0.0529 to align
# Constraint # added constraint: constraint((T0378)V63.CB, (T0378)V87.CB) [> 4.5456 = 7.5760 < 9.8488] w=0.0500 to align
# Constraint # added constraint: constraint((T0378)G47.CA, (T0378)Q82.CB) [> 4.7692 = 7.9487 < 10.3333] w=0.0417 to align
# Constraint # added constraint: constraint((T0378)V27.CB, (T0378)L84.CB) [> 3.3145 = 5.5242 < 7.1815] w=0.0416 to align
# Constraint # added constraint: constraint((T0378)A49.CB, (T0378)Q82.CB) [> 4.7874 = 7.9789 < 10.3726] w=0.0416 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)V239.CB) [> 4.0749 = 6.7915 < 8.8289] w=0.0416 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)L246.CB) [> 4.3591 = 7.2652 < 9.4447] w=0.0416 to align
# Constraint # added constraint: constraint((T0378)G203.CA, (T0378)A242.CB) [> 4.6585 = 7.7643 < 10.0935] w=0.0416 to align
# Constraint # added constraint: constraint((T0378)A225.CB, (T0378)I245.CB) [> 3.3988 = 5.6646 < 7.3640] w=0.0416 to align
# Constraint # added constraint: constraint((T0378)V230.CB, (T0378)I245.CB) [> 4.1194 = 6.8657 < 8.9254] w=0.0416 to align
# Constraint # added constraint: constraint((T0378)K231.CB, (T0378)A240.CB) [> 2.9897 = 4.9828 < 6.4776] w=0.0416 to align
# Constraint # added constraint: constraint((T0378)K231.CB, (T0378)I241.CB) [> 2.6593 = 4.4321 < 5.7618] w=0.0416 to align
# Constraint # added constraint: constraint((T0378)V27.CB, (T0378)G47.CA) [> 3.9078 = 6.5130 < 8.4669] w=0.0416 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)F180.CB) [> 4.3120 = 7.1867 < 9.3428] w=0.0415 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)G178.CA) [> 4.1715 = 6.9525 < 9.0383] w=0.0415 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)S248.CB) [> 4.5650 = 7.6083 < 9.8909] w=0.0414 to align
# Constraint # added constraint: constraint((T0378)A198.CB, (T0378)C247.CB) [> 3.6342 = 6.0571 < 7.8742] w=0.0414 to align
# Constraint # added constraint: constraint((T0378)G125.CA, (T0378)S248.CB) [> 4.1098 = 6.8497 < 8.9046] w=0.0414 to align
# Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)T243.CB) [> 4.7090 = 7.8483 < 10.2028] w=0.0414 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)I223.CB) [> 4.4808 = 7.4679 < 9.7083] w=0.0412 to align
# Constraint # added constraint: constraint((T0378)D164.CB, (T0378)R220.CB) [> 4.7615 = 7.9358 < 10.3165] w=0.0412 to align
# Constraint # added constraint: constraint((T0378)M36.CB, (T0378)L237.CB) [> 3.7625 = 6.2708 < 8.1520] w=0.0410 to align
# Constraint # added constraint: constraint((T0378)Y40.CB, (T0378)T234.CB) [> 4.4464 = 7.4106 < 9.6338] w=0.0410 to align
# Constraint # added constraint: constraint((T0378)E28.CB, (T0378)I241.CB) [> 2.8276 = 4.7127 < 6.1265] w=0.0410 to align
# Constraint # added constraint: constraint((T0378)L32.CB, (T0378)A49.CB) [> 4.7536 = 7.9227 < 10.2995] w=0.0410 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)T195.CB) [> 2.6842 = 4.4737 < 5.8158] w=0.0410 to align
# Constraint # added constraint: constraint((T0378)R41.CB, (T0378)I241.CB) [> 2.7627 = 4.6045 < 5.9858] w=0.0410 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)S140.CB) [> 3.0087 = 5.0145 < 6.5188] w=0.0406 to align
# Constraint # added constraint: constraint((T0378)A49.CB, (T0378)L105.CB) [> 4.5975 = 7.6625 < 9.9613] w=0.0391 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)L181.CB) [> 3.6339 = 6.0566 < 7.8735] w=0.0357 to align
# Constraint # added constraint: constraint((T0378)H233.CB, (T0378)I245.CB) [> 3.9786 = 6.6310 < 8.6203] w=0.0354 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L101.CB) [> 3.6744 = 6.1240 < 7.9612] w=0.0351 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)T102.CB) [> 3.4399 = 5.7331 < 7.4531] w=0.0351 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L103.CB) [> 3.6218 = 6.0363 < 7.8471] w=0.0351 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)L131.CB) [> 4.6721 = 7.7868 < 10.1229] w=0.0346 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)L221.CB) [> 4.3351 = 7.2251 < 9.3926] w=0.0324 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)L221.CB) [> 3.6731 = 6.1218 < 7.9583] w=0.0324 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)V201.CB) [> 3.0134 = 5.0224 < 6.5291] w=0.0324 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)L202.CB) [> 4.0879 = 6.8132 < 8.8572] w=0.0324 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)L202.CB) [> 2.8478 = 4.7463 < 6.1701] w=0.0324 to align
# Constraint # added constraint: constraint((T0378)A150.CB, (T0378)S248.CB) [> 3.0925 = 5.1542 < 6.7005] w=0.0312 to align
# Constraint # added constraint: constraint((T0378)V63.CB, (T0378)D106.CB) [> 4.6116 = 7.6861 < 9.9919] w=0.0292 to align
# Constraint # added constraint: constraint((T0378)F9.CB, (T0378)C247.CB) [> 4.5163 = 7.5271 < 9.7852] w=0.0236 to align
# Constraint # added constraint: constraint((T0378)F9.CB, (T0378)A244.CB) [> 2.7749 = 4.6249 < 6.0123] w=0.0236 to align
# Constraint # added constraint: constraint((T0378)L2.CB, (T0378)T243.CB) [> 4.2443 = 7.0738 < 9.1960] w=0.0236 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)G178.CA) [> 4.7626 = 7.9377 < 10.3189] w=0.0228 to align
# Constraint # added constraint: constraint((T0378)L2.CB, (T0378)R74.CB) [> 2.9189 = 4.8649 < 6.3243] w=0.0208 to align
# Constraint # added constraint: constraint((T0378)I7.CB, (T0378)L84.CB) [> 2.7518 = 4.5864 < 5.9623] w=0.0208 to align
# Constraint # added constraint: constraint((T0378)Q6.CB, (T0378)L84.CB) [> 3.6436 = 6.0727 < 7.8945] w=0.0208 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)I245.CB) [> 4.7568 = 7.9280 < 10.3064] w=0.0208 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)I245.CB) [> 4.7981 = 7.9969 < 10.3959] w=0.0208 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)L246.CB) [> 3.5029 = 5.8381 < 7.5895] w=0.0208 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)G203.CA) [> 4.5018 = 7.5030 < 9.7539] w=0.0207 to align
# Constraint # added constraint: constraint((T0378)V98.CB, (T0378)A244.CB) [> 3.5141 = 5.8569 < 7.6139] w=0.0207 to align
# Constraint # added constraint: constraint((T0378)I75.CB, (T0378)L84.CB) [> 4.2166 = 7.0277 < 9.1360] w=0.0207 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)I199.CB) [> 4.2573 = 7.0956 < 9.2242] w=0.0207 to align
# Constraint # added constraint: constraint((T0378)L191.CB, (T0378)W250.CB) [> 4.4091 = 7.3485 < 9.5530] w=0.0207 to align
# Constraint # added constraint: constraint((T0378)T79.CB, (T0378)T234.CB) [> 3.5596 = 5.9327 < 7.7125] w=0.0206 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)E205.CB) [> 2.9811 = 4.9684 < 6.4590] w=0.0206 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)P175.CB) [> 4.7737 = 7.9562 < 10.3431] w=0.0206 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)I223.CB) [> 2.8041 = 4.6736 < 6.0757] w=0.0206 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)I223.CB) [> 4.5293 = 7.5488 < 9.8134] w=0.0206 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)L221.CB) [> 4.3274 = 7.2123 < 9.3760] w=0.0206 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)L221.CB) [> 2.5122 = 4.1870 < 5.4430] w=0.0206 to align
# Constraint # added constraint: constraint((T0378)W130.CB, (T0378)L181.CB) [> 3.9114 = 6.5189 < 8.4746] w=0.0206 to align
# Constraint # added constraint: constraint((T0378)R127.CB, (T0378)I199.CB) [> 3.5998 = 5.9997 < 7.7996] w=0.0206 to align
# Constraint # added constraint: constraint((T0378)R127.CB, (T0378)A198.CB) [> 3.3743 = 5.6238 < 7.3109] w=0.0206 to align
# Constraint # added constraint: constraint((T0378)R127.CB, (T0378)G178.CA) [> 3.4326 = 5.7210 < 7.4372] w=0.0206 to align
# Constraint # added constraint: constraint((T0378)R127.CB, (T0378)Y177.CB) [> 3.3499 = 5.5832 < 7.2582] w=0.0206 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)I223.CB) [> 4.6570 = 7.7616 < 10.0901] w=0.0206 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)R127.CB) [> 4.5623 = 7.6038 < 9.8850] w=0.0206 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)E205.CB) [> 4.1926 = 6.9876 < 9.0839] w=0.0206 to align
# Constraint # added constraint: constraint((T0378)V201.CB, (T0378)I223.CB) [> 3.5265 = 5.8776 < 7.6408] w=0.0205 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)V239.CB) [> 3.8676 = 6.4461 < 8.3799] w=0.0203 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)T243.CB) [> 3.3873 = 5.6455 < 7.3391] w=0.0203 to align
# Constraint # added constraint: constraint((T0378)V87.CB, (T0378)L101.CB) [> 4.4916 = 7.4861 < 9.7319] w=0.0203 to align
# Constraint # added constraint: constraint((T0378)V87.CB, (T0378)R127.CB) [> 4.7682 = 7.9470 < 10.3311] w=0.0203 to align
# Constraint # added constraint: constraint((T0378)P175.CB, (T0378)L200.CB) [> 2.8966 = 4.8277 < 6.2759] w=0.0203 to align
# Constraint # added constraint: constraint((T0378)M148.CB, (T0378)L159.CB) [> 4.5322 = 7.5537 < 9.8198] w=0.0203 to align
# Constraint # added constraint: constraint((T0378)G206.CA, (T0378)L221.CB) [> 3.7680 = 6.2801 < 8.1641] w=0.0195 to align
# Constraint # added constraint: constraint((T0378)G206.CA, (T0378)I223.CB) [> 3.9133 = 6.5222 < 8.4789] w=0.0195 to align
# Constraint # added constraint: constraint((T0378)I217.CB, (T0378)I245.CB) [> 2.7091 = 4.5152 < 5.8698] w=0.0195 to align
# Constraint # added constraint: constraint((T0378)I217.CB, (T0378)S248.CB) [> 4.7053 = 7.8422 < 10.1949] w=0.0195 to align
# Constraint # added constraint: constraint((T0378)G203.CA, (T0378)L221.CB) [> 4.5366 = 7.5610 < 9.8293] w=0.0195 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)W130.CB) [> 4.3688 = 7.2814 < 9.4658] w=0.0194 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)G107.CA) [> 3.3888 = 5.6480 < 7.3424] w=0.0194 to align
# Constraint # added constraint: constraint((T0378)I199.CB, (T0378)T243.CB) [> 3.9793 = 6.6321 < 8.6218] w=0.0194 to align
# Constraint # added constraint: constraint((T0378)I199.CB, (T0378)I223.CB) [> 2.5519 = 4.2531 < 5.5290] w=0.0194 to align
# Constraint # added constraint: constraint((T0378)A198.CB, (T0378)I223.CB) [> 3.9137 = 6.5228 < 8.4797] w=0.0194 to align
# Constraint # added constraint: constraint((T0378)P197.CB, (T0378)W250.CB) [> 4.7916 = 7.9859 < 10.3817] w=0.0194 to align
# Constraint # added constraint: constraint((T0378)T234.CB, (T0378)T243.CB) [> 4.0873 = 6.8121 < 8.8557] w=0.0194 to align
# Constraint # added constraint: constraint((T0378)V201.CB, (T0378)T243.CB) [> 3.1932 = 5.3220 < 6.9186] w=0.0194 to align
# Constraint # added constraint: constraint((T0378)L200.CB, (T0378)I223.CB) [> 4.1186 = 6.8643 < 8.9236] w=0.0194 to align
# Constraint # added constraint: constraint((T0378)L151.CB, (T0378)S248.CB) [> 3.4626 = 5.7710 < 7.5023] w=0.0194 to align
# Constraint # added constraint: constraint((T0378)A150.CB, (T0378)E249.CB) [> 3.0478 = 5.0796 < 6.6035] w=0.0194 to align
# Constraint # added constraint: constraint((T0378)A150.CB, (T0378)I245.CB) [> 4.6334 = 7.7223 < 10.0390] w=0.0194 to align
# Constraint # added constraint: constraint((T0378)G178.CA, (T0378)T243.CB) [> 4.4655 = 7.4424 < 9.6752] w=0.0194 to align
# Constraint # added constraint: constraint((T0378)V176.CB, (T0378)S248.CB) [> 4.2784 = 7.1306 < 9.2698] w=0.0194 to align
# Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L131.CB) [> 4.6047 = 7.6746 < 9.9769] w=0.0151 to align
# Constraint # added constraint: constraint((T0378)L181.CB, (T0378)S204.CB) [> 2.4490 = 4.0817 < 5.3062] w=0.0151 to align
# Constraint # added constraint: constraint((T0378)F180.CB, (T0378)S204.CB) [> 2.9851 = 4.9752 < 6.4678] w=0.0151 to align
# Constraint # added constraint: constraint((T0378)A179.CB, (T0378)S204.CB) [> 4.5461 = 7.5768 < 9.8499] w=0.0151 to align
# Constraint # added constraint: constraint((T0378)L104.CB, (T0378)T133.CB) [> 3.0581 = 5.0968 < 6.6259] w=0.0151 to align
# Constraint # added constraint: constraint((T0378)L101.CB, (T0378)L131.CB) [> 4.6071 = 7.6785 < 9.9821] w=0.0151 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)L131.CB) [> 3.2300 = 5.3833 < 6.9983] w=0.0151 to align
# Constraint # added constraint: constraint((T0378)L103.CB, (T0378)T133.CB) [> 4.7598 = 7.9330 < 10.3130] w=0.0151 to align
# Constraint # added constraint: constraint((T0378)V55.CB, (T0378)R251.CB) [> 3.3448 = 5.5746 < 7.2470] w=0.0118 to align
# Constraint # added constraint: constraint((T0378)T165.CB, (T0378)E249.CB) [> 3.3053 = 5.5088 < 7.1615] w=0.0118 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)L246.CB) [> 4.1490 = 6.9150 < 8.9895] w=0.0118 to align
# Constraint # added constraint: constraint((T0378)T102.CB, (T0378)V201.CB) [> 4.0648 = 6.7748 < 8.8072] w=0.0118 to align
# Constraint # added constraint: constraint((T0378)T133.CB, (T0378)V239.CB) [> 2.6672 = 4.4453 < 5.7788] w=0.0118 to align
# Constraint # added constraint: constraint((T0378)T133.CB, (T0378)G206.CA) [> 4.3332 = 7.2220 < 9.3886] w=0.0118 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)T243.CB) [> 3.2862 = 5.4771 < 7.1202] w=0.0118 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)V239.CB) [> 3.1669 = 5.2782 < 6.8617] w=0.0118 to align
# Constraint # added constraint: constraint((T0378)L131.CB, (T0378)V201.CB) [> 4.7488 = 7.9146 < 10.2890] w=0.0118 to align
# Constraint # added constraint: constraint((T0378)G107.CA, (T0378)I223.CB) [> 4.5220 = 7.5367 < 9.7978] w=0.0118 to align
# Constraint # added constraint: constraint((T0378)D106.CB, (T0378)L221.CB) [> 4.5193 = 7.5322 < 9.7919] w=0.0118 to align
# Constraint # added constraint: constraint((T0378)L105.CB, (T0378)V176.CB) [> 4.2068 = 7.0113 < 9.1147] w=0.0021 to align
# SetCost created cost = 
#	( 1.0000 * align )
# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0378/
# command:# reading script from file servers-clean.under
# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0378/decoys/
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS5
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS5
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS5
# ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1
# choosing archetypes in rotamer library
# Found a chain break before 105
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS1
# ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1
# Found a chain break before 40
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS2
# ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1
# Found a chain break before 94
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS3
# ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS4
# ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS5
# ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1
# Found a chain break before 249
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS1
# ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1
# Found a chain break before 199
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS2
# ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1
# Found a chain break before 239
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS3
# ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1
# Found a chain break before 205
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS4
# ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1
# Found a chain break before 234
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS5
# ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1
# Found a chain break before 190
# copying to AlignedFragments data structure
# naming current conformation BayesHH_TS1
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1
# Found a chain break before 253
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS1
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1
# Found a chain break before 177
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS2
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS3
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1
# Found a chain break before 186
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS4
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1
# Found a chain break before 186
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS5
# ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1
# Found a chain break before 244
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS1
# ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS2
# ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1
# Found a chain break before 224
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS3
# ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1
# Found a chain break before 244
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS4
# ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS5
# ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation CPHmodels_TS1
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1
# Found a chain break before 233
# copying to AlignedFragments data structure
# naming current conformation CaspIta-FOX_TS1
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation CaspIta-FOX_TS2
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS3
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS4
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS5
# ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Distill_TS1
# ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Distill_TS2
# ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Distill_TS3
# ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Distill_TS4
# ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Distill_TS5
# ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1
# Found a chain break before 191
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS1
# ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS2
# ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS3
# ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS4
# ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS5
# ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1
# Found a chain break before 234
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS1
# ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FAMS_TS2
# ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FAMS_TS3
# ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1
# Found a chain break before 244
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS4
# ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FAMS_TS5
# ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1
# Found a chain break before 176
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS1
# ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1
# Found a chain break before 176
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS2
# ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1
# Found a chain break before 196
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS3
# ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1
# Found a chain break before 176
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS4
# ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1
# Found a chain break before 176
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS5
# ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL1
# ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL2
# ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL3
# ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL4
# ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1
Skipped atom 498, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 502, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 504, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 506, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 508, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 518, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 520, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 522, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 524, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 534, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 536, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL5
# ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL1
# ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL2
# ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL3
# ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL4
# ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL5
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1
# Found a chain break before 242
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS1
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1
# Found a chain break before 216
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS2
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1
# Found a chain break before 188
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS3
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1
# Found a chain break before 193
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS4
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1
# Found a chain break before 173
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS5
# ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL1
# ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL2
# ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL3
# ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL4
# ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL5
# ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1
# Found a chain break before 247
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS1
# ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1
# Found a chain break before 251
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS2
# ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1
# Found a chain break before 253
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS3
# ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1
# Found a chain break before 253
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS4
# ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1
# Found a chain break before 251
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS5
# ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation Frankenstein_TS1
# ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1
# Found a chain break before 99
# copying to AlignedFragments data structure
# naming current conformation Frankenstein_TS2
# ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1
# Found a chain break before 149
# copying to AlignedFragments data structure
# naming current conformation Frankenstein_TS3
# ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1
# Found a chain break before 245
# copying to AlignedFragments data structure
# naming current conformation Frankenstein_TS4
# ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation Frankenstein_TS5
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1
# Found a chain break before 190
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS1
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS2
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1
# Found a chain break before 76
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS3
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1
# Found a chain break before 235
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS4
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS5
# ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1
# Found a chain break before 76
# copying to AlignedFragments data structure
# naming current conformation HHpred1_TS1
# ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1
# Found a chain break before 111
# copying to AlignedFragments data structure
# naming current conformation HHpred2_TS1
# ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation HHpred3_TS1
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS1
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS2
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS3
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS4
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS5
# ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1
# Found a chain break before 205
# copying to AlignedFragments data structure
# naming current conformation LOOPP_TS1
# ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS2
# ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation LOOPP_TS3
# ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS4
# ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS5
# ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation MIG_FROST_AL1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1
# Found a chain break before 76
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS2
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1
# Found a chain break before 163
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS3
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1
# Found a chain break before 190
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS4
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1
# Found a chain break before 89
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS5
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1
# Found a chain break before 190
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1
# Found a chain break before 89
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS2
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1
# Found a chain break before 94
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS3
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS4
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1
# Found a chain break before 163
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS5
# ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1
# Found a chain break before 235
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS1
# ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1
# Found a chain break before 236
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS2
# ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1
# Found a chain break before 229
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS3
# ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1
# Found a chain break before 250
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS4
# ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1
# Found a chain break before 235
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS5
# ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1
# Found a chain break before 205
# copying to AlignedFragments data structure
# naming current conformation NN_PUT_lab_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS2
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS3
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS4
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS5
# ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1
# Found a chain break before 196
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1
# Found a chain break before 230
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS2
# ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1
# Found a chain break before 230
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS3
# ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1
# Found a chain break before 95
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS4
# ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1
# Found a chain break before 231
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS5
# ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1
# Found a chain break before 253
# copying to AlignedFragments data structure
# naming current conformation Pcons6_TS1
# ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1
# Found a chain break before 253
# copying to AlignedFragments data structure
# naming current conformation Pcons6_TS2
# ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1
# Found a chain break before 189
# copying to AlignedFragments data structure
# naming current conformation Pcons6_TS3
# ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1
# Found a chain break before 250
# copying to AlignedFragments data structure
# naming current conformation Pcons6_TS4
# ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1
# Found a chain break before 235
# copying to AlignedFragments data structure
# naming current conformation Pcons6_TS5
# ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Phyre-1_TS1
# ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Phyre-2_TS1
# ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Phyre-2_TS2
# ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Phyre-2_TS3
# ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Phyre-2_TS4
# ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation Phyre-2_TS5
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1
# Found a chain break before 235
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS1
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1
# Found a chain break before 235
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS2
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1
# Found a chain break before 253
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS3
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1
# Found a chain break before 235
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS4
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1
# Found a chain break before 235
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS5
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1
# Found a chain break before 76
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS1
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1
# Found a chain break before 48
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS2
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1
# Found a chain break before 226
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS3
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1
# Found a chain break before 234
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS4
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1
# Found a chain break before 96
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS5
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS1
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1
# Found a chain break before 223
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS2
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1
# Found a chain break before 155
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS3
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1
# Found a chain break before 237
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS4
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1
# Found a chain break before 208
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS5
# ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1
# Found a chain break before 94
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS1
# ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1
# Found a chain break before 190
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS2
# ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS3
# ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1
# Found a chain break before 181
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS4
# ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1
# Found a chain break before 206
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS5
# ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1
# Found a chain break before 159
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS1
# ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1
# Found a chain break before 224
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS2
# ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1
# Found a chain break before 194
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS3
# ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1
# Found a chain break before 228
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS4
# ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1
# Found a chain break before 190
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS5
# ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1
# Found a chain break before 130
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS1
# ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL1
# ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL2
# ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL3
# ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL4
# ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL5
# ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL1
# ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL2
# ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL3
# ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL4
# ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL5
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1
# Found a chain break before 238
# copying to AlignedFragments data structure
# naming current conformation SAM_T06_server_TS1
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS2
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS3
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS4
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS5
# ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1
# Found a chain break before 234
# copying to AlignedFragments data structure
# naming current conformation SP3_TS1
# ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation SP3_TS2
# ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1
# Found a chain break before 202
# copying to AlignedFragments data structure
# naming current conformation SP3_TS3
# ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1
# Found a chain break before 187
# copying to AlignedFragments data structure
# naming current conformation SP3_TS4
# ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1
# Found a chain break before 143
# copying to AlignedFragments data structure
# naming current conformation SP3_TS5
# ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1
# Found a chain break before 187
# copying to AlignedFragments data structure
# naming current conformation SP4_TS1
# ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation SP4_TS2
# ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1
# Found a chain break before 202
# copying to AlignedFragments data structure
# naming current conformation SP4_TS3
# ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1
# naming current conformation SP4_TS4
# ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1
# Found a chain break before 111
# copying to AlignedFragments data structure
# naming current conformation SP4_TS5
# ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1
# Found a chain break before 76
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS1
# ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS2
# ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1
# Found a chain break before 208
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS3
# ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1
# Found a chain break before 196
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS4
# ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1
# Found a chain break before 143
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS5
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS1
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS2
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS3
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS4
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS5
# ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation UNI-EID_expm_TS1
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL1
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL2
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL3
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL4
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL5
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1
# Found a chain break before 135
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS1
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1
# Found a chain break before 229
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS2
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1
# Found a chain break before 232
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS3
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1
# Found a chain break before 224
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS4
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1
# Found a chain break before 229
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS5
# ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1
# Found a chain break before 253
# copying to AlignedFragments data structure
# naming current conformation beautshot_TS1
# ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1
# Found a chain break before 253
# copying to AlignedFragments data structure
# naming current conformation beautshotbase_TS1
# ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL1
# ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL2
# ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL3
# ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1
Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 502, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 504, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 506, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 508, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 518, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 520, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 522, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 524, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 534, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
Skipped atom 536, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL4
# ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL5
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1
# Found a chain break before 188
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1
# Found a chain break before 189
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1
# naming current conformation karypis.srv.2_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1
# Found a chain break before 186
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1
# Found a chain break before 189
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS5
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1
WARNING: atoms too close: (T0378)T157.O and (T0378)P158.N only 0.000 apart, marking (T0378)P158.N as missing
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1
WARNING: atoms too close: (T0378)G100.O and (T0378)L101.N only 0.000 apart, marking (T0378)L101.N as missing
WARNING: atoms too close: (T0378)G115.O and (T0378)T116.N only 0.000 apart, marking (T0378)T116.N as missing
WARNING: atoms too close: (T0378)T157.O and (T0378)P158.N only 0.000 apart, marking (T0378)P158.N as missing
WARNING: atoms too close: (T0378)F180.O and (T0378)L181.N only 0.000 apart, marking (T0378)L181.N as missing
WARNING: atoms too close: (T0378)F194.O and (T0378)T195.N only 0.000 apart, marking (T0378)T195.N as missing
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1
# Found a chain break before 248
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1
# Found a chain break before 251
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1
WARNING: atoms too close: (T0378)A189.O and (T0378)P190.N only 0.000 apart, marking (T0378)P190.N as missing
WARNING: atoms too close: (T0378)T243.O and (T0378)A244.N only 0.000 apart, marking (T0378)A244.N as missing
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS5
# ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS5
# ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1
# naming current conformation keasar-server_TS1
# ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1
# Found a chain break before 104
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS2
# ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1
# naming current conformation keasar-server_TS3
# ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1
# Found a chain break before 86
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS4
# ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1
# Found a chain break before 198
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS5
# ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation mGen-3D_TS1
# ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS1
# ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS2
# ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1
WARNING: atom 1 has residue number 1  < previous residue 254  in servers/nFOLD_TS3.pdb.gz
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS3
# ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1
WARNING: atom 1 has residue number 1  < previous residue 254  in servers/nFOLD_TS4.pdb.gz
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS4
# ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1
WARNING: atom 1 has residue number 1  < previous residue 254  in servers/nFOLD_TS5.pdb.gz
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS5
# ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1
WARNING: atoms too close: (T0378)V64.N and (T0378)E65.N only 0.000 apart, marking (T0378)E65.N as missing
WARNING: atoms too close: (T0378)V64.CA and (T0378)E65.CA only 0.000 apart, marking (T0378)E65.CA as missing
WARNING: atoms too close: (T0378)V64.CB and (T0378)E65.CB only 0.000 apart, marking (T0378)E65.CB as missing
WARNING: atoms too close: (T0378)V64.CG1 and (T0378)E65.CG only 0.000 apart, marking (T0378)E65.CG as missing
WARNING: atoms too close: (T0378)V64.O and (T0378)E65.O only 0.000 apart, marking (T0378)E65.O as missing
WARNING: atoms too close: (T0378)V64.C and (T0378)E65.C only 0.000 apart, marking (T0378)E65.C as missing
WARNING: atoms too close: (T0378)E65.N and (T0378)L66.N only 0.000 apart, marking (T0378)E65.N as missing
WARNING: atoms too close: (T0378)V64.N and (T0378)L66.N only 0.000 apart, marking (T0378)L66.N as missing
WARNING: atoms too close: (T0378)E65.CA and (T0378)L66.CA only 0.000 apart, marking (T0378)L66.CA as missing
WARNING: atoms too close: (T0378)V64.CA and (T0378)L66.CA only 0.000 apart, marking (T0378)L66.CA as missing
WARNING: atoms too close: (T0378)E65.CB and (T0378)L66.CB only 0.000 apart, marking (T0378)L66.CB as missing
WARNING: atoms too close: (T0378)V64.CB and (T0378)L66.CB only 0.000 apart, marking (T0378)L66.CB as missing
WARNING: atoms too close: (T0378)E65.CG and (T0378)L66.CG only 0.000 apart, marking (T0378)L66.CG as missing
WARNING: atoms too close: (T0378)V64.CG1 and (T0378)L66.CG only 0.000 apart, marking (T0378)L66.CG as missing
WARNING: atoms too close: (T0378)E65.CD and (T0378)L66.CD1 only 0.000 apart, marking (T0378)L66.CD1 as missing
WARNING: atoms too close: (T0378)E65.O and (T0378)L66.O only 0.000 apart, marking (T0378)L66.O as missing
WARNING: atoms too close: (T0378)V64.O and (T0378)L66.O only 0.000 apart, marking (T0378)L66.O as missing
WARNING: atoms too close: (T0378)E65.C and (T0378)L66.C only 0.000 apart, marking (T0378)L66.C as missing
WARNING: atoms too close: (T0378)V64.C and (T0378)L66.C only 0.000 apart, marking (T0378)L66.C as missing
WARNING: atoms too close: (T0378)L66.N and (T0378)P67.N only 0.000 apart, marking (T0378)L66.N as missing
WARNING: atoms too close: (T0378)E65.N and (T0378)P67.N only 0.000 apart, marking (T0378)E65.N as missing
WARNING: atoms too close: (T0378)V64.N and (T0378)P67.N only 0.000 apart, marking (T0378)P67.N as missing
WARNING: atoms too close: (T0378)L66.CA and (T0378)P67.CA only 0.000 apart, marking (T0378)P67.CA as missing
WARNING: atoms too close: (T0378)E65.CA and (T0378)P67.CA only 0.000 apart, marking (T0378)P67.CA as missing
WARNING: atoms too close: (T0378)V64.CA and (T0378)P67.CA only 0.000 apart, marking (T0378)P67.CA as missing
WARNING: atoms too close: (T0378)L66.CB and (T0378)P67.CB only 0.000 apart, marking (T0378)P67.CB as missing
WARNING: atoms too close: (T0378)E65.CB and (T0378)P67.CB only 0.000 apart, marking (T0378)P67.CB as missing
WARNING: atoms too close: (T0378)V64.CB and (T0378)P67.CB only 0.000 apart, marking (T0378)P67.CB as missing
WARNING: atoms too close: (T0378)L66.O and (T0378)P67.O only 0.000 apart, marking (T0378)P67.O as missing
WARNING: atoms too close: (T0378)E65.O and (T0378)P67.O only 0.000 apart, marking (T0378)P67.O as missing
WARNING: atoms too close: (T0378)V64.O and (T0378)P67.O only 0.000 apart, marking (T0378)P67.O as missing
WARNING: atoms too close: (T0378)L66.C and (T0378)P67.C only 0.000 apart, marking (T0378)P67.C as missing
WARNING: atoms too close: (T0378)E65.C and (T0378)P67.C only 0.000 apart, marking (T0378)P67.C as missing
WARNING: atoms too close: (T0378)V64.C and (T0378)P67.C only 0.000 apart, marking (T0378)P67.C as missing
WARNING: atoms too close: (T0378)P67.N and (T0378)E68.N only 0.000 apart, marking (T0378)P67.N as missing
WARNING: atoms too close: (T0378)L66.N and (T0378)E68.N only 0.000 apart, marking (T0378)L66.N as missing
WARNING: atoms too close: (T0378)E65.N and (T0378)E68.N only 0.000 apart, marking (T0378)E65.N as missing
WARNING: atoms too close: (T0378)V64.N and (T0378)E68.N only 0.000 apart, marking (T0378)E68.N as missing
WARNING: atoms too close: (T0378)P67.CA and (T0378)E68.CA only 0.000 apart, marking (T0378)E68.CA as missing
WARNING: atoms too close: (T0378)L66.CA and (T0378)E68.CA only 0.000 apart, marking (T0378)E68.CA as missing
WARNING: atoms too close: (T0378)E65.CA and (T0378)E68.CA only 0.000 apart, marking (T0378)E68.CA as missing
WARNING: atoms too close: (T0378)V64.CA and (T0378)E68.CA only 0.000 apart, marking (T0378)E68.CA as missing
WARNING: atoms too close: (T0378)P67.CB and (T0378)E68.CB only 0.000 apart, marking (T0378)E68.CB as missing
WARNING: atoms too close: (T0378)L66.CB and (T0378)E68.CB only 0.000 apart, marking (T0378)E68.CB as missing
WARNING: atoms too close: (T0378)E65.CB and (T0378)E68.CB only 0.000 apart, marking (T0378)E68.CB as missing
WARNING: atoms too close: (T0378)V64.CB and (T0378)E68.CB only 0.000 apart, marking (T0378)E68.CB as missing
WARNING: atoms too close: (T0378)L66.CG and (T0378)E68.CG only 0.000 apart, marking (T0378)E68.CG as missing
WARNING: atoms too close: (T0378)E65.CG and (T0378)E68.CG only 0.000 apart, marking (T0378)E68.CG as missing
WARNING: atoms too close: (T0378)V64.CG1 and (T0378)E68.CG only 0.000 apart, marking (T0378)E68.CG as missing
WARNING: atoms too close: (T0378)L66.CD1 and (T0378)E68.CD only 0.000 apart, marking (T0378)E68.CD as missing
WARNING: atoms too close: (T0378)E65.CD and (T0378)E68.CD only 0.000 apart, marking (T0378)E68.CD as missing
WARNING: atoms too close: (T0378)P67.O and (T0378)E68.O only 0.000 apart, marking (T0378)E68.O as missing
WARNING: atoms too close: (T0378)L66.O and (T0378)E68.O only 0.000 apart, marking (T0378)E68.O as missing
WARNING: atoms too close: (T0378)E65.O and (T0378)E68.O only 0.000 apart, marking (T0378)E68.O as missing
WARNING: atoms too close: (T0378)V64.O and (T0378)E68.O only 0.000 apart, marking (T0378)E68.O as missing
WARNING: atoms too close: (T0378)P67.C and (T0378)E68.C only 0.000 apart, marking (T0378)E68.C as missing
WARNING: atoms too close: (T0378)L66.C and (T0378)E68.C only 0.000 apart, marking (T0378)E68.C as missing
WARNING: atoms too close: (T0378)E65.C and (T0378)E68.C only 0.000 apart, marking (T0378)E68.C as missing
WARNING: atoms too close: (T0378)V64.C and (T0378)E68.C only 0.000 apart, marking (T0378)E68.C as missing
WARNING: atoms too close: (T0378)E68.N and (T0378)S69.N only 0.000 apart, marking (T0378)E68.N as missing
WARNING: atoms too close: (T0378)P67.N and (T0378)S69.N only 0.000 apart, marking (T0378)P67.N as missing
WARNING: atoms too close: (T0378)L66.N and (T0378)S69.N only 0.000 apart, marking (T0378)L66.N as missing
WARNING: atoms too close: (T0378)E65.N and (T0378)S69.N only 0.000 apart, marking (T0378)E65.N as missing
WARNING: atoms too close: (T0378)V64.N and (T0378)S69.N only 0.000 apart, marking (T0378)S69.N as missing
WARNING: atoms too close: (T0378)E68.CA and (T0378)S69.CA only 0.000 apart, marking (T0378)S69.CA as missing
WARNING: atoms too close: (T0378)P67.CA and (T0378)S69.CA only 0.000 apart, marking (T0378)S69.CA as missing
WARNING: atoms too close: (T0378)L66.CA and (T0378)S69.CA only 0.000 apart, marking (T0378)S69.CA as missing
WARNING: atoms too close: (T0378)E65.CA and (T0378)S69.CA only 0.000 apart, marking (T0378)S69.CA as missing
WARNING: atoms too close: (T0378)V64.CA and (T0378)S69.CA only 0.000 apart, marking (T0378)S69.CA as missing
WARNING: atoms too close: (T0378)E68.CB and (T0378)S69.CB only 0.000 apart, marking (T0378)S69.CB as missing
WARNING: atoms too close: (T0378)P67.CB and (T0378)S69.CB only 0.000 apart, marking (T0378)S69.CB as missing
WARNING: atoms too close: (T0378)L66.CB and (T0378)S69.CB only 0.000 apart, marking (T0378)S69.CB as missing
WARNING: atoms too close: (T0378)E65.CB and (T0378)S69.CB only 0.000 apart, marking (T0378)S69.CB as missing
WARNING: atoms too close: (T0378)V64.CB and (T0378)S69.CB only 0.000 apart, marking (T0378)S69.CB as missing
WARNING: atoms too close: (T0378)E68.O and (T0378)S69.O only 0.000 apart, marking (T0378)S69.O as missing
WARNING: atoms too close: (T0378)P67.O and (T0378)S69.O only 0.000 apart, marking (T0378)S69.O as missing
WARNING: atoms too close: (T0378)L66.O and (T0378)S69.O only 0.000 apart, marking (T0378)S69.O as missing
WARNING: atoms too close: (T0378)E65.O and (T0378)S69.O only 0.000 apart, marking (T0378)S69.O as missing
WARNING: atoms too close: (T0378)V64.O and (T0378)S69.O only 0.000 apart, marking (T0378)S69.O as missing
WARNING: atoms too close: (T0378)E68.C and (T0378)S69.C only 0.000 apart, marking (T0378)S69.C as missing
WARNING: atoms too close: (T0378)P67.C and (T0378)S69.C only 0.000 apart, marking (T0378)S69.C as missing
WARNING: atoms too close: (T0378)L66.C and (T0378)S69.C only 0.000 apart, marking (T0378)S69.C as missing
WARNING: atoms too close: (T0378)E65.C and (T0378)S69.C only 0.000 apart, marking (T0378)S69.C as missing
WARNING: atoms too close: (T0378)V64.C and (T0378)S69.C only 0.000 apart, marking (T0378)S69.C as missing
WARNING: atoms too close: (T0378)S69.N and (T0378)F70.N only 0.000 apart, marking (T0378)S69.N as missing
WARNING: atoms too close: (T0378)E68.N and (T0378)F70.N only 0.000 apart, marking (T0378)E68.N as missing
WARNING: atoms too close: (T0378)P67.N and (T0378)F70.N only 0.000 apart, marking (T0378)P67.N as missing
WARNING: atoms too close: (T0378)L66.N and (T0378)F70.N only 0.000 apart, marking (T0378)L66.N as missing
WARNING: atoms too close: (T0378)E65.N and (T0378)F70.N only 0.000 apart, marking (T0378)E65.N as missing
WARNING: atoms too close: (T0378)V64.N and (T0378)F70.N only 0.000 apart, marking (T0378)F70.N as missing
WARNING: atoms too close: (T0378)S69.CA and (T0378)F70.CA only 0.000 apart, marking (T0378)F70.CA as missing
WARNING: atoms too close: (T0378)E68.CA and (T0378)F70.CA only 0.000 apart, marking (T0378)F70.CA as missing
WARNING: atoms too close: (T0378)P67.CA and (T0378)F70.CA only 0.000 apart, marking (T0378)F70.CA as missing
WARNING: atoms too close: (T0378)L66.CA and (T0378)F70.CA only 0.000 apart, marking (T0378)F70.CA as missing
WARNING: atoms too close: (T0378)E65.CA and (T0378)F70.CA only 0.000 apart, marking (T0378)F70.CA as missing
WARNING: atoms too close: (T0378)V64.CA and (T0378)F70.CA only 0.000 apart, marking (T0378)F70.CA as missing
WARNING: atoms too close: (T0378)S69.CB and (T0378)F70.CB only 0.000 apart, marking (T0378)F70.CB as missing
WARNING: atoms too close: (T0378)E68.CB and (T0378)F70.CB only 0.000 apart, marking (T0378)F70.CB as missing
WARNING: atoms too close: (T0378)P67.CB and (T0378)F70.CB only 0.000 apart, marking (T0378)F70.CB as missing
WARNING: atoms too close: (T0378)L66.CB and (T0378)F70.CB only 0.000 apart, marking (T0378)F70.CB as missing
WARNING: atoms too close: (T0378)E65.CB and (T0378)F70.CB only 0.000 apart, marking (T0378)F70.CB as missing
WARNING: atoms too close: (T0378)V64.CB and (T0378)F70.CB only 0.000 apart, marking (T0378)F70.CB as missing
WARNING: atoms too close: (T0378)E68.CG and (T0378)F70.CG only 0.000 apart, marking (T0378)F70.CG as missing
WARNING: atoms too close: (T0378)L66.CG and (T0378)F70.CG only 0.000 apart, marking (T0378)F70.CG as missing
WARNING: atoms too close: (T0378)E65.CG and (T0378)F70.CG only 0.000 apart, marking (T0378)F70.CG as missing
WARNING: atoms too close: (T0378)V64.CG1 and (T0378)F70.CG only 0.000 apart, marking (T0378)F70.CG as missing
WARNING: atoms too close: (T0378)S69.O and (T0378)F70.O only 0.000 apart, marking (T0378)F70.O as missing
WARNING: atoms too close: (T0378)E68.O and (T0378)F70.O only 0.000 apart, marking (T0378)F70.O as missing
WARNING: atoms too close: (T0378)P67.O and (T0378)F70.O only 0.000 apart, marking (T0378)F70.O as missing
WARNING: atoms too close: (T0378)L66.O and (T0378)F70.O only 0.000 apart, marking (T0378)F70.O as missing
WARNING: atoms too close: (T0378)E65.O and (T0378)F70.O only 0.000 apart, marking (T0378)F70.O as missing
WARNING: atoms too close: (T0378)V64.O and (T0378)F70.O only 0.000 apart, marking (T0378)F70.O as missing
WARNING: atoms too close: (T0378)S69.C and (T0378)F70.C only 0.000 apart, marking (T0378)F70.C as missing
WARNING: atoms too close: (T0378)E68.C and (T0378)F70.C only 0.000 apart, marking (T0378)F70.C as missing
WARNING: atoms too close: (T0378)P67.C and (T0378)F70.C only 0.000 apart, marking (T0378)F70.C as missing
WARNING: atoms too close: (T0378)L66.C and (T0378)F70.C only 0.000 apart, marking (T0378)F70.C as missing
WARNING: atoms too close: (T0378)E65.C and (T0378)F70.C only 0.000 apart, marking (T0378)F70.C as missing
WARNING: atoms too close: (T0378)V64.C and (T0378)F70.C only 0.000 apart, marking (T0378)F70.C as missing
WARNING: atoms too close: (T0378)F70.N and (T0378)D71.N only 0.000 apart, marking (T0378)F70.N as missing
WARNING: atoms too close: (T0378)S69.N and (T0378)D71.N only 0.000 apart, marking (T0378)S69.N as missing
WARNING: atoms too close: (T0378)E68.N and (T0378)D71.N only 0.000 apart, marking (T0378)E68.N as missing
WARNING: atoms too close: (T0378)P67.N and (T0378)D71.N only 0.000 apart, marking (T0378)P67.N as missing
WARNING: atoms too close: (T0378)L66.N and (T0378)D71.N only 0.000 apart, marking (T0378)L66.N as missing
WARNING: atoms too close: (T0378)E65.N and (T0378)D71.N only 0.000 apart, marking (T0378)E65.N as missing
WARNING: atoms too close: (T0378)V64.N and (T0378)D71.N only 0.000 apart, marking (T0378)D71.N as missing
WARNING: atoms too close: (T0378)F70.CA and (T0378)D71.CA only 0.000 apart, marking (T0378)D71.CA as missing
WARNING: atoms too close: (T0378)S69.CA and (T0378)D71.CA only 0.000 apart, marking (T0378)D71.CA as missing
WARNING: atoms too close: (T0378)E68.CA and (T0378)D71.CA only 0.000 apart, marking (T0378)D71.CA as missing
WARNING: atoms too close: (T0378)P67.CA and (T0378)D71.CA only 0.000 apart, marking (T0378)D71.CA as missing
WARNING: atoms too close: (T0378)L66.CA and (T0378)D71.CA only 0.000 apart, marking (T0378)D71.CA as missing
WARNING: atoms too close: (T0378)E65.CA and (T0378)D71.CA only 0.000 apart, marking (T0378)D71.CA as missing
WARNING: atoms too close: (T0378)V64.CA and (T0378)D71.CA only 0.000 apart, marking (T0378)D71.CA as missing
WARNING: atoms too close: (T0378)F70.CB and (T0378)D71.CB only 0.000 apart, marking (T0378)D71.CB as missing
WARNING: atoms too close: (T0378)S69.CB and (T0378)D71.CB only 0.000 apart, marking (T0378)D71.CB as missing
WARNING: atoms too close: (T0378)E68.CB and (T0378)D71.CB only 0.000 apart, marking (T0378)D71.CB as missing
WARNING: atoms too close: (T0378)P67.CB and (T0378)D71.CB only 0.000 apart, marking (T0378)D71.CB as missing
WARNING: atoms too close: (T0378)L66.CB and (T0378)D71.CB only 0.000 apart, marking (T0378)D71.CB as missing
WARNING: atoms too close: (T0378)E65.CB and (T0378)D71.CB only 0.000 apart, marking (T0378)D71.CB as missing
WARNING: atoms too close: (T0378)V64.CB and (T0378)D71.CB only 0.000 apart, marking (T0378)D71.CB as missing
WARNING: atoms too close: (T0378)F70.CG and (T0378)D71.CG only 0.000 apart, marking (T0378)D71.CG as missing
WARNING: atoms too close: (T0378)E68.CG and (T0378)D71.CG only 0.000 apart, marking (T0378)D71.CG as missing
WARNING: atoms too close: (T0378)L66.CG and (T0378)D71.CG only 0.000 apart, marking (T0378)D71.CG as missing
WARNING: atoms too close: (T0378)E65.CG and (T0378)D71.CG only 0.000 apart, marking (T0378)D71.CG as missing
WARNING: atoms too close: (T0378)V64.CG1 and (T0378)D71.CG only 0.000 apart, marking (T0378)D71.CG as missing
WARNING: atoms too close: (T0378)F70.O and (T0378)D71.O only 0.000 apart, marking (T0378)D71.O as missing
WARNING: atoms too close: (T0378)S69.O and (T0378)D71.O only 0.000 apart, marking (T0378)D71.O as missing
WARNING: atoms too close: (T0378)E68.O and (T0378)D71.O only 0.000 apart, marking (T0378)D71.O as missing
WARNING: atoms too close: (T0378)P67.O and (T0378)D71.O only 0.000 apart, marking (T0378)D71.O as missing
WARNING: atoms too close: (T0378)L66.O and (T0378)D71.O only 0.000 apart, marking (T0378)D71.O as missing
WARNING: atoms too close: (T0378)E65.O and (T0378)D71.O only 0.000 apart, marking (T0378)D71.O as missing
WARNING: atoms too close: (T0378)V64.O and (T0378)D71.O only 0.000 apart, marking (T0378)D71.O as missing
WARNING: atoms too close: (T0378)F70.C and (T0378)D71.C only 0.000 apart, marking (T0378)D71.C as missing
WARNING: atoms too close: (T0378)S69.C and (T0378)D71.C only 0.000 apart, marking (T0378)D71.C as missing
WARNING: atoms too close: (T0378)E68.C and (T0378)D71.C only 0.000 apart, marking (T0378)D71.C as missing
WARNING: atoms too close: (T0378)P67.C and (T0378)D71.C only 0.000 apart, marking (T0378)D71.C as missing
WARNING: atoms too close: (T0378)L66.C and (T0378)D71.C only 0.000 apart, marking (T0378)D71.C as missing
WARNING: atoms too close: (T0378)E65.C and (T0378)D71.C only 0.000 apart, marking (T0378)D71.C as missing
WARNING: atoms too close: (T0378)V64.C and (T0378)D71.C only 0.000 apart, marking (T0378)D71.C as missing
WARNING: atoms too close: (T0378)D71.N and (T0378)L181.N only 0.000 apart, marking (T0378)D71.N as missing
WARNING: atoms too close: (T0378)F70.N and (T0378)L181.N only 0.000 apart, marking (T0378)F70.N as missing
WARNING: atoms too close: (T0378)S69.N and (T0378)L181.N only 0.000 apart, marking (T0378)S69.N as missing
WARNING: atoms too close: (T0378)E68.N and (T0378)L181.N only 0.000 apart, marking (T0378)E68.N as missing
WARNING: atoms too close: (T0378)P67.N and (T0378)L181.N only 0.000 apart, marking (T0378)P67.N as missing
WARNING: atoms too close: (T0378)L66.N and (T0378)L181.N only 0.000 apart, marking (T0378)L66.N as missing
WARNING: atoms too close: (T0378)E65.N and (T0378)L181.N only 0.000 apart, marking (T0378)E65.N as missing
WARNING: atoms too close: (T0378)V64.N and (T0378)L181.N only 0.000 apart, marking (T0378)L181.N as missing
WARNING: atoms too close: (T0378)D71.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing
WARNING: atoms too close: (T0378)F70.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing
WARNING: atoms too close: (T0378)S69.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing
WARNING: atoms too close: (T0378)E68.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing
WARNING: atoms too close: (T0378)P67.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing
WARNING: atoms too close: (T0378)L66.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing
WARNING: atoms too close: (T0378)E65.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing
WARNING: atoms too close: (T0378)V64.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing
WARNING: atoms too close: (T0378)D71.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing
WARNING: atoms too close: (T0378)F70.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing
WARNING: atoms too close: (T0378)S69.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing
WARNING: atoms too close: (T0378)E68.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing
WARNING: atoms too close: (T0378)P67.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing
WARNING: atoms too close: (T0378)L66.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing
WARNING: atoms too close: (T0378)E65.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing
WARNING: atoms too close: (T0378)V64.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing
WARNING: atoms too close: (T0378)D71.CG and (T0378)L181.CG only 0.000 apart, marking (T0378)L181.CG as missing
WARNING: atoms too close: (T0378)F70.CG and (T0378)L181.CG only 0.000 apart, marking (T0378)L181.CG as missing
WARNING: atoms too close: (T0378)E68.CG and (T0378)L181.CG only 0.000 apart, marking (T0378)L181.CG as missing
WARNING: atoms too close: (T0378)L66.CG and (T0378)L181.CG only 0.000 apart, marking (T0378)L181.CG as missing
WARNING: atoms too close: (T0378)E65.CG and (T0378)L181.CG only 0.000 apart, marking (T0378)L181.CG as missing
WARNING: atoms too close: (T0378)V64.CG1 and (T0378)L181.CG only 0.000 apart, marking (T0378)L181.CG as missing
WARNING: atoms too close: (T0378)E68.CD and (T0378)L181.CD1 only 0.000 apart, marking (T0378)L181.CD1 as missing
WARNING: atoms too close: (T0378)L66.CD1 and (T0378)L181.CD1 only 0.000 apart, marking (T0378)L181.CD1 as missing
WARNING: atoms too close: (T0378)E65.CD and (T0378)L181.CD1 only 0.000 apart, marking (T0378)L181.CD1 as missing
WARNING: atoms too close: (T0378)L66.CD2 and (T0378)L181.CD2 only 0.000 apart, marking (T0378)L181.CD2 as missing
WARNING: atoms too close: (T0378)D71.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing
WARNING: atoms too close: (T0378)F70.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing
WARNING: atoms too close: (T0378)S69.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing
WARNING: atoms too close: (T0378)E68.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing
WARNING: atoms too close: (T0378)P67.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing
WARNING: atoms too close: (T0378)L66.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing
WARNING: atoms too close: (T0378)E65.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing
WARNING: atoms too close: (T0378)V64.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing
WARNING: atoms too close: (T0378)D71.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing
WARNING: atoms too close: (T0378)F70.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing
WARNING: atoms too close: (T0378)S69.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing
WARNING: atoms too close: (T0378)E68.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing
WARNING: atoms too close: (T0378)P67.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing
WARNING: atoms too close: (T0378)L66.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing
WARNING: atoms too close: (T0378)E65.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing
WARNING: atoms too close: (T0378)V64.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing
WARNING: atoms too close: (T0378)L181.N and (T0378)D182.N only 0.000 apart, marking (T0378)L181.N as missing
WARNING: atoms too close: (T0378)D71.N and (T0378)D182.N only 0.000 apart, marking (T0378)D71.N as missing
WARNING: atoms too close: (T0378)F70.N and (T0378)D182.N only 0.000 apart, marking (T0378)F70.N as missing
WARNING: atoms too close: (T0378)S69.N and (T0378)D182.N only 0.000 apart, marking (T0378)S69.N as missing
WARNING: atoms too close: (T0378)E68.N and (T0378)D182.N only 0.000 apart, marking (T0378)E68.N as missing
WARNING: atoms too close: (T0378)P67.N and (T0378)D182.N only 0.000 apart, marking (T0378)P67.N as missing
WARNING: atoms too close: (T0378)L66.N and (T0378)D182.N only 0.000 apart, marking (T0378)L66.N as missing
WARNING: atoms too close: (T0378)E65.N and (T0378)D182.N only 0.000 apart, marking (T0378)E65.N as missing
WARNING: atoms too close: (T0378)V64.N and (T0378)D182.N only 0.000 apart, marking (T0378)D182.N as missing
WARNING: atoms too close: (T0378)L181.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing
WARNING: atoms too close: (T0378)D71.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing
WARNING: atoms too close: (T0378)F70.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing
WARNING: atoms too close: (T0378)S69.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing
WARNING: atoms too close: (T0378)E68.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing
WARNING: atoms too close: (T0378)P67.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing
WARNING: atoms too close: (T0378)L66.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing
WARNING: atoms too close: (T0378)E65.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing
WARNING: atoms too close: (T0378)V64.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing
WARNING: atoms too close: (T0378)L181.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing
WARNING: atoms too close: (T0378)D71.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing
WARNING: atoms too close: (T0378)F70.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing
WARNING: atoms too close: (T0378)S69.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing
WARNING: atoms too close: (T0378)E68.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing
WARNING: atoms too close: (T0378)P67.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing
WARNING: atoms too close: (T0378)L66.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing
WARNING: atoms too close: (T0378)E65.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing
WARNING: atoms too close: (T0378)V64.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing
WARNING: atoms too close: (T0378)L181.CG and (T0378)D182.CG only 0.000 apart, marking (T0378)D182.CG as missing
WARNING: atoms too close: (T0378)D71.CG and (T0378)D182.CG only 0.000 apart, marking (T0378)D182.CG as missing
WARNING: atoms too close: (T0378)F70.CG and (T0378)D182.CG only 0.000 apart, marking (T0378)D182.CG as missing
WARNING: atoms too close: (T0378)E68.CG and (T0378)D182.CG only 0.000 apart, marking (T0378)D182.CG as missing
WARNING: atoms too close: (T0378)L66.CG and (T0378)D182.CG only 0.000 apart, marking (T0378)D182.CG as missing
WARNING: atoms too close: (T0378)E65.CG and (T0378)D182.CG only 0.000 apart, marking (T0378)D182.CG as missing
WARNING: atoms too close: (T0378)V64.CG1 and (T0378)D182.CG only 0.000 apart, marking (T0378)D182.CG as missing
WARNING: atoms too close: (T0378)L181.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing
WARNING: atoms too close: (T0378)D71.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing
WARNING: atoms too close: (T0378)F70.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing
WARNING: atoms too close: (T0378)S69.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing
WARNING: atoms too close: (T0378)E68.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing
WARNING: atoms too close: (T0378)P67.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing
WARNING: atoms too close: (T0378)L66.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing
WARNING: atoms too close: (T0378)E65.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing
WARNING: atoms too close: (T0378)V64.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing
WARNING: atoms too close: (T0378)L181.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing
WARNING: atoms too close: (T0378)D71.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing
WARNING: atoms too close: (T0378)F70.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing
WARNING: atoms too close: (T0378)S69.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing
WARNING: atoms too close: (T0378)E68.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing
WARNING: atoms too close: (T0378)P67.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing
WARNING: atoms too close: (T0378)L66.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing
WARNING: atoms too close: (T0378)E65.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing
WARNING: atoms too close: (T0378)V64.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing
WARNING: atoms too close: (T0378)D182.N and (T0378)G227.N only 0.000 apart, marking (T0378)D182.N as missing
WARNING: atoms too close: (T0378)L181.N and (T0378)G227.N only 0.000 apart, marking (T0378)L181.N as missing
WARNING: atoms too close: (T0378)D71.N and (T0378)G227.N only 0.000 apart, marking (T0378)D71.N as missing
WARNING: atoms too close: (T0378)F70.N and (T0378)G227.N only 0.000 apart, marking (T0378)F70.N as missing
WARNING: atoms too close: (T0378)S69.N and (T0378)G227.N only 0.000 apart, marking (T0378)S69.N as missing
WARNING: atoms too close: (T0378)E68.N and (T0378)G227.N only 0.000 apart, marking (T0378)E68.N as missing
WARNING: atoms too close: (T0378)P67.N and (T0378)G227.N only 0.000 apart, marking (T0378)P67.N as missing
WARNING: atoms too close: (T0378)L66.N and (T0378)G227.N only 0.000 apart, marking (T0378)L66.N as missing
WARNING: atoms too close: (T0378)E65.N and (T0378)G227.N only 0.000 apart, marking (T0378)E65.N as missing
WARNING: atoms too close: (T0378)V64.N and (T0378)G227.N only 0.000 apart, marking (T0378)G227.N as missing
WARNING: atoms too close: (T0378)D182.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing
WARNING: atoms too close: (T0378)L181.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing
WARNING: atoms too close: (T0378)D71.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing
WARNING: atoms too close: (T0378)F70.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing
WARNING: atoms too close: (T0378)S69.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing
WARNING: atoms too close: (T0378)E68.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing
WARNING: atoms too close: (T0378)P67.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing
WARNING: atoms too close: (T0378)L66.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing
WARNING: atoms too close: (T0378)E65.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing
WARNING: atoms too close: (T0378)V64.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing
WARNING: atoms too close: (T0378)D182.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing
WARNING: atoms too close: (T0378)L181.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing
WARNING: atoms too close: (T0378)D71.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing
WARNING: atoms too close: (T0378)F70.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing
WARNING: atoms too close: (T0378)S69.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing
WARNING: atoms too close: (T0378)E68.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing
WARNING: atoms too close: (T0378)P67.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing
WARNING: atoms too close: (T0378)L66.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing
WARNING: atoms too close: (T0378)E65.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing
WARNING: atoms too close: (T0378)V64.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing
WARNING: atoms too close: (T0378)D182.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing
WARNING: atoms too close: (T0378)L181.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing
WARNING: atoms too close: (T0378)D71.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing
WARNING: atoms too close: (T0378)F70.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing
WARNING: atoms too close: (T0378)S69.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing
WARNING: atoms too close: (T0378)E68.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing
WARNING: atoms too close: (T0378)P67.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing
WARNING: atoms too close: (T0378)L66.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing
WARNING: atoms too close: (T0378)E65.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing
WARNING: atoms too close: (T0378)V64.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing
WARNING: atoms too close: (T0378)G227.N and (T0378)L228.N only 0.000 apart, marking (T0378)G227.N as missing
WARNING: atoms too close: (T0378)D182.N and (T0378)L228.N only 0.000 apart, marking (T0378)D182.N as missing
WARNING: atoms too close: (T0378)L181.N and (T0378)L228.N only 0.000 apart, marking (T0378)L181.N as missing
WARNING: atoms too close: (T0378)D71.N and (T0378)L228.N only 0.000 apart, marking (T0378)D71.N as missing
WARNING: atoms too close: (T0378)F70.N and (T0378)L228.N only 0.000 apart, marking (T0378)F70.N as missing
WARNING: atoms too close: (T0378)S69.N and (T0378)L228.N only 0.000 apart, marking (T0378)S69.N as missing
WARNING: atoms too close: (T0378)E68.N and (T0378)L228.N only 0.000 apart, marking (T0378)E68.N as missing
WARNING: atoms too close: (T0378)P67.N and (T0378)L228.N only 0.000 apart, marking (T0378)P67.N as missing
WARNING: atoms too close: (T0378)L66.N and (T0378)L228.N only 0.000 apart, marking (T0378)L66.N as missing
WARNING: atoms too close: (T0378)E65.N and (T0378)L228.N only 0.000 apart, marking (T0378)E65.N as missing
WARNING: atoms too close: (T0378)V64.N and (T0378)L228.N only 0.000 apart, marking (T0378)L228.N as missing
WARNING: atoms too close: (T0378)G227.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing
WARNING: atoms too close: (T0378)D182.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing
WARNING: atoms too close: (T0378)L181.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing
WARNING: atoms too close: (T0378)D71.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing
WARNING: atoms too close: (T0378)F70.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing
WARNING: atoms too close: (T0378)S69.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing
WARNING: atoms too close: (T0378)E68.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing
WARNING: atoms too close: (T0378)P67.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing
WARNING: atoms too close: (T0378)L66.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing
WARNING: atoms too close: (T0378)E65.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing
WARNING: atoms too close: (T0378)V64.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing
WARNING: atoms too close: (T0378)D182.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing
WARNING: atoms too close: (T0378)L181.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing
WARNING: atoms too close: (T0378)D71.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing
WARNING: atoms too close: (T0378)F70.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing
WARNING: atoms too close: (T0378)S69.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing
WARNING: atoms too close: (T0378)E68.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing
WARNING: atoms too close: (T0378)P67.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing
WARNING: atoms too close: (T0378)L66.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing
WARNING: atoms too close: (T0378)E65.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing
WARNING: atoms too close: (T0378)V64.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing
WARNING: atoms too close: (T0378)D182.CG and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing
WARNING: atoms too close: (T0378)L181.CG and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing
WARNING: atoms too close: (T0378)D71.CG and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing
WARNING: atoms too close: (T0378)F70.CG and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing
WARNING: atoms too close: (T0378)E68.CG and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing
WARNING: atoms too close: (T0378)L66.CG and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing
WARNING: atoms too close: (T0378)E65.CG and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing
WARNING: atoms too close: (T0378)V64.CG1 and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing
WARNING: atoms too close: (T0378)L181.CD1 and (T0378)L228.CD1 only 0.000 apart, marking (T0378)L228.CD1 as missing
WARNING: atoms too close: (T0378)E68.CD and (T0378)L228.CD1 only 0.000 apart, marking (T0378)L228.CD1 as missing
WARNING: atoms too close: (T0378)L66.CD1 and (T0378)L228.CD1 only 0.000 apart, marking (T0378)L228.CD1 as missing
WARNING: atoms too close: (T0378)E65.CD and (T0378)L228.CD1 only 0.000 apart, marking (T0378)L228.CD1 as missing
WARNING: atoms too close: (T0378)L181.CD2 and (T0378)L228.CD2 only 0.000 apart, marking (T0378)L228.CD2 as missing
WARNING: atoms too close: (T0378)L66.CD2 and (T0378)L228.CD2 only 0.000 apart, marking (T0378)L228.CD2 as missing
WARNING: atoms too close: (T0378)G227.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing
WARNING: atoms too close: (T0378)D182.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing
WARNING: atoms too close: (T0378)L181.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing
WARNING: atoms too close: (T0378)D71.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing
WARNING: atoms too close: (T0378)F70.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing
WARNING: atoms too close: (T0378)S69.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing
WARNING: atoms too close: (T0378)E68.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing
WARNING: atoms too close: (T0378)P67.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing
WARNING: atoms too close: (T0378)L66.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing
WARNING: atoms too close: (T0378)E65.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing
WARNING: atoms too close: (T0378)V64.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing
WARNING: atoms too close: (T0378)G227.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing
WARNING: atoms too close: (T0378)D182.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing
WARNING: atoms too close: (T0378)L181.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing
WARNING: atoms too close: (T0378)D71.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing
WARNING: atoms too close: (T0378)F70.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing
WARNING: atoms too close: (T0378)S69.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing
WARNING: atoms too close: (T0378)E68.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing
WARNING: atoms too close: (T0378)P67.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing
WARNING: atoms too close: (T0378)L66.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing
WARNING: atoms too close: (T0378)E65.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing
WARNING: atoms too close: (T0378)V64.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing
WARNING: atoms too close: (T0378)L228.N and (T0378)S229.N only 0.000 apart, marking (T0378)L228.N as missing
WARNING: atoms too close: (T0378)G227.N and (T0378)S229.N only 0.000 apart, marking (T0378)G227.N as missing
WARNING: atoms too close: (T0378)D182.N and (T0378)S229.N only 0.000 apart, marking (T0378)D182.N as missing
WARNING: atoms too close: (T0378)L181.N and (T0378)S229.N only 0.000 apart, marking (T0378)L181.N as missing
WARNING: atoms too close: (T0378)D71.N and (T0378)S229.N only 0.000 apart, marking (T0378)D71.N as missing
WARNING: atoms too close: (T0378)F70.N and (T0378)S229.N only 0.000 apart, marking (T0378)F70.N as missing
WARNING: atoms too close: (T0378)S69.N and (T0378)S229.N only 0.000 apart, marking (T0378)S69.N as missing
WARNING: atoms too close: (T0378)E68.N and (T0378)S229.N only 0.000 apart, marking (T0378)E68.N as missing
WARNING: atoms too close: (T0378)P67.N and (T0378)S229.N only 0.000 apart, marking (T0378)P67.N as missing
WARNING: atoms too close: (T0378)L66.N and (T0378)S229.N only 0.000 apart, marking (T0378)L66.N as missing
WARNING: atoms too close: (T0378)E65.N and (T0378)S229.N only 0.000 apart, marking (T0378)E65.N as missing
WARNING: atoms too close: (T0378)V64.N and (T0378)S229.N only 0.000 apart, marking (T0378)S229.N as missing
WARNING: atoms too close: (T0378)L228.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing
WARNING: atoms too close: (T0378)G227.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing
WARNING: atoms too close: (T0378)D182.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing
WARNING: atoms too close: (T0378)L181.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing
WARNING: atoms too close: (T0378)D71.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing
WARNING: atoms too close: (T0378)F70.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing
WARNING: atoms too close: (T0378)S69.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing
WARNING: atoms too close: (T0378)E68.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing
WARNING: atoms too close: (T0378)P67.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing
WARNING: atoms too close: (T0378)L66.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing
WARNING: atoms too close: (T0378)E65.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing
WARNING: atoms too close: (T0378)V64.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing
WARNING: atoms too close: (T0378)L228.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing
WARNING: atoms too close: (T0378)D182.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing
WARNING: atoms too close: (T0378)L181.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing
WARNING: atoms too close: (T0378)D71.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing
WARNING: atoms too close: (T0378)F70.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing
WARNING: atoms too close: (T0378)S69.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing
WARNING: atoms too close: (T0378)E68.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing
WARNING: atoms too close: (T0378)P67.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing
WARNING: atoms too close: (T0378)L66.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing
WARNING: atoms too close: (T0378)E65.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing
WARNING: atoms too close: (T0378)V64.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing
WARNING: atoms too close: (T0378)L228.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing
WARNING: atoms too close: (T0378)G227.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing
WARNING: atoms too close: (T0378)D182.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing
WARNING: atoms too close: (T0378)L181.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing
WARNING: atoms too close: (T0378)D71.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing
WARNING: atoms too close: (T0378)F70.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing
WARNING: atoms too close: (T0378)S69.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing
WARNING: atoms too close: (T0378)E68.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing
WARNING: atoms too close: (T0378)P67.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing
WARNING: atoms too close: (T0378)L66.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing
WARNING: atoms too close: (T0378)E65.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing
WARNING: atoms too close: (T0378)V64.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing
WARNING: atoms too close: (T0378)L228.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing
WARNING: atoms too close: (T0378)G227.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing
WARNING: atoms too close: (T0378)D182.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing
WARNING: atoms too close: (T0378)L181.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing
WARNING: atoms too close: (T0378)D71.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing
WARNING: atoms too close: (T0378)F70.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing
WARNING: atoms too close: (T0378)S69.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing
WARNING: atoms too close: (T0378)E68.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing
WARNING: atoms too close: (T0378)P67.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing
WARNING: atoms too close: (T0378)L66.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing
WARNING: atoms too close: (T0378)E65.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing
WARNING: atoms too close: (T0378)V64.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing
WARNING: atoms too close: (T0378)S229.N and (T0378)V230.N only 0.000 apart, marking (T0378)S229.N as missing
WARNING: atoms too close: (T0378)L228.N and (T0378)V230.N only 0.000 apart, marking (T0378)L228.N as missing
WARNING: atoms too close: (T0378)G227.N and (T0378)V230.N only 0.000 apart, marking (T0378)G227.N as missing
WARNING: atoms too close: (T0378)D182.N and (T0378)V230.N only 0.000 apart, marking (T0378)D182.N as missing
WARNING: atoms too close: (T0378)L181.N and (T0378)V230.N only 0.000 apart, marking (T0378)L181.N as missing
WARNING: atoms too close: (T0378)D71.N and (T0378)V230.N only 0.000 apart, marking (T0378)D71.N as missing
WARNING: atoms too close: (T0378)F70.N and (T0378)V230.N only 0.000 apart, marking (T0378)F70.N as missing
WARNING: atoms too close: (T0378)S69.N and (T0378)V230.N only 0.000 apart, marking (T0378)S69.N as missing
WARNING: atoms too close: (T0378)E68.N and (T0378)V230.N only 0.000 apart, marking (T0378)E68.N as missing
WARNING: atoms too close: (T0378)P67.N and (T0378)V230.N only 0.000 apart, marking (T0378)P67.N as missing
WARNING: atoms too close: (T0378)L66.N and (T0378)V230.N only 0.000 apart, marking (T0378)L66.N as missing
WARNING: atoms too close: (T0378)E65.N and (T0378)V230.N only 0.000 apart, marking (T0378)E65.N as missing
WARNING: atoms too close: (T0378)V64.N and (T0378)V230.N only 0.000 apart, marking (T0378)V230.N as missing
WARNING: atoms too close: (T0378)S229.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing
WARNING: atoms too close: (T0378)L228.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing
WARNING: atoms too close: (T0378)G227.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing
WARNING: atoms too close: (T0378)D182.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing
WARNING: atoms too close: (T0378)L181.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing
WARNING: atoms too close: (T0378)D71.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing
WARNING: atoms too close: (T0378)F70.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing
WARNING: atoms too close: (T0378)S69.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing
WARNING: atoms too close: (T0378)E68.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing
WARNING: atoms too close: (T0378)P67.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing
WARNING: atoms too close: (T0378)L66.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing
WARNING: atoms too close: (T0378)E65.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing
WARNING: atoms too close: (T0378)V64.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing
WARNING: atoms too close: (T0378)S229.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing
WARNING: atoms too close: (T0378)L228.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing
WARNING: atoms too close: (T0378)D182.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing
WARNING: atoms too close: (T0378)L181.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing
WARNING: atoms too close: (T0378)D71.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing
WARNING: atoms too close: (T0378)F70.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing
WARNING: atoms too close: (T0378)S69.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing
WARNING: atoms too close: (T0378)E68.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing
WARNING: atoms too close: (T0378)P67.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing
WARNING: atoms too close: (T0378)L66.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing
WARNING: atoms too close: (T0378)E65.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing
WARNING: atoms too close: (T0378)V64.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing
WARNING: atoms too close: (T0378)L228.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing
WARNING: atoms too close: (T0378)D182.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing
WARNING: atoms too close: (T0378)L181.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing
WARNING: atoms too close: (T0378)D71.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing
WARNING: atoms too close: (T0378)F70.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing
WARNING: atoms too close: (T0378)E68.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing
WARNING: atoms too close: (T0378)L66.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing
WARNING: atoms too close: (T0378)E65.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing
WARNING: atoms too close: (T0378)V64.CG1 and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing
WARNING: atoms too close: (T0378)S229.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing
WARNING: atoms too close: (T0378)L228.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing
WARNING: atoms too close: (T0378)G227.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing
WARNING: atoms too close: (T0378)D182.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing
WARNING: atoms too close: (T0378)L181.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing
WARNING: atoms too close: (T0378)D71.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing
WARNING: atoms too close: (T0378)F70.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing
WARNING: atoms too close: (T0378)S69.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing
WARNING: atoms too close: (T0378)E68.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing
WARNING: atoms too close: (T0378)P67.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing
WARNING: atoms too close: (T0378)L66.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing
WARNING: atoms too close: (T0378)E65.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing
WARNING: atoms too close: (T0378)V64.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing
WARNING: atoms too close: (T0378)S229.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing
WARNING: atoms too close: (T0378)L228.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing
WARNING: atoms too close: (T0378)G227.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing
WARNING: atoms too close: (T0378)D182.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing
WARNING: atoms too close: (T0378)L181.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing
WARNING: atoms too close: (T0378)D71.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing
WARNING: atoms too close: (T0378)F70.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing
WARNING: atoms too close: (T0378)S69.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing
WARNING: atoms too close: (T0378)E68.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing
WARNING: atoms too close: (T0378)P67.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing
WARNING: atoms too close: (T0378)L66.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing
WARNING: atoms too close: (T0378)E65.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing
WARNING: atoms too close: (T0378)V64.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing
WARNING: atoms too close: (T0378)V230.N and (T0378)K231.N only 0.000 apart, marking (T0378)V230.N as missing
WARNING: atoms too close: (T0378)S229.N and (T0378)K231.N only 0.000 apart, marking (T0378)S229.N as missing
WARNING: atoms too close: (T0378)L228.N and (T0378)K231.N only 0.000 apart, marking (T0378)L228.N as missing
WARNING: atoms too close: (T0378)G227.N and (T0378)K231.N only 0.000 apart, marking (T0378)G227.N as missing
WARNING: atoms too close: (T0378)D182.N and (T0378)K231.N only 0.000 apart, marking (T0378)D182.N as missing
WARNING: atoms too close: (T0378)L181.N and (T0378)K231.N only 0.000 apart, marking (T0378)L181.N as missing
WARNING: atoms too close: (T0378)D71.N and (T0378)K231.N only 0.000 apart, marking (T0378)D71.N as missing
WARNING: atoms too close: (T0378)F70.N and (T0378)K231.N only 0.000 apart, marking (T0378)F70.N as missing
WARNING: atoms too close: (T0378)S69.N and (T0378)K231.N only 0.000 apart, marking (T0378)S69.N as missing
WARNING: atoms too close: (T0378)E68.N and (T0378)K231.N only 0.000 apart, marking (T0378)E68.N as missing
WARNING: atoms too close: (T0378)P67.N and (T0378)K231.N only 0.000 apart, marking (T0378)P67.N as missing
WARNING: atoms too close: (T0378)L66.N and (T0378)K231.N only 0.000 apart, marking (T0378)L66.N as missing
WARNING: atoms too close: (T0378)E65.N and (T0378)K231.N only 0.000 apart, marking (T0378)E65.N as missing
WARNING: atoms too close: (T0378)V64.N and (T0378)K231.N only 0.000 apart, marking (T0378)K231.N as missing
WARNING: atoms too close: (T0378)V230.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing
WARNING: atoms too close: (T0378)S229.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing
WARNING: atoms too close: (T0378)L228.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing
WARNING: atoms too close: (T0378)G227.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing
WARNING: atoms too close: (T0378)D182.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing
WARNING: atoms too close: (T0378)L181.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing
WARNING: atoms too close: (T0378)D71.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing
WARNING: atoms too close: (T0378)F70.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing
WARNING: atoms too close: (T0378)S69.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing
WARNING: atoms too close: (T0378)E68.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing
WARNING: atoms too close: (T0378)P67.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing
WARNING: atoms too close: (T0378)L66.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing
WARNING: atoms too close: (T0378)E65.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing
WARNING: atoms too close: (T0378)V64.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing
WARNING: atoms too close: (T0378)V230.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing
WARNING: atoms too close: (T0378)S229.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing
WARNING: atoms too close: (T0378)L228.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing
WARNING: atoms too close: (T0378)D182.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing
WARNING: atoms too close: (T0378)L181.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing
WARNING: atoms too close: (T0378)D71.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing
WARNING: atoms too close: (T0378)F70.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing
WARNING: atoms too close: (T0378)S69.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing
WARNING: atoms too close: (T0378)E68.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing
WARNING: atoms too close: (T0378)P67.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing
WARNING: atoms too close: (T0378)L66.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing
WARNING: atoms too close: (T0378)E65.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing
WARNING: atoms too close: (T0378)V64.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing
WARNING: atoms too close: (T0378)V230.CG1 and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing
WARNING: atoms too close: (T0378)L228.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing
WARNING: atoms too close: (T0378)D182.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing
WARNING: atoms too close: (T0378)L181.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing
WARNING: atoms too close: (T0378)D71.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing
WARNING: atoms too close: (T0378)F70.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing
WARNING: atoms too close: (T0378)E68.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing
WARNING: atoms too close: (T0378)L66.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing
WARNING: atoms too close: (T0378)E65.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing
WARNING: atoms too close: (T0378)V64.CG1 and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing
WARNING: atoms too close: (T0378)L228.CD1 and (T0378)K231.CD only 0.000 apart, marking (T0378)K231.CD as missing
WARNING: atoms too close: (T0378)L181.CD1 and (T0378)K231.CD only 0.000 apart, marking (T0378)K231.CD as missing
WARNING: atoms too close: (T0378)E68.CD and (T0378)K231.CD only 0.000 apart, marking (T0378)K231.CD as missing
WARNING: atoms too close: (T0378)L66.CD1 and (T0378)K231.CD only 0.000 apart, marking (T0378)K231.CD as missing
WARNING: atoms too close: (T0378)E65.CD and (T0378)K231.CD only 0.000 apart, marking (T0378)K231.CD as missing
WARNING: atoms too close: (T0378)V230.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing
WARNING: atoms too close: (T0378)S229.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing
WARNING: atoms too close: (T0378)L228.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing
WARNING: atoms too close: (T0378)G227.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing
WARNING: atoms too close: (T0378)D182.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing
WARNING: atoms too close: (T0378)L181.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing
WARNING: atoms too close: (T0378)D71.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing
WARNING: atoms too close: (T0378)F70.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing
WARNING: atoms too close: (T0378)S69.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing
WARNING: atoms too close: (T0378)E68.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing
WARNING: atoms too close: (T0378)P67.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing
WARNING: atoms too close: (T0378)L66.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing
WARNING: atoms too close: (T0378)E65.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing
WARNING: atoms too close: (T0378)V64.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing
WARNING: atoms too close: (T0378)V230.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing
WARNING: atoms too close: (T0378)S229.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing
WARNING: atoms too close: (T0378)L228.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing
WARNING: atoms too close: (T0378)G227.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing
WARNING: atoms too close: (T0378)D182.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing
WARNING: atoms too close: (T0378)L181.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing
WARNING: atoms too close: (T0378)D71.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing
WARNING: atoms too close: (T0378)F70.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing
WARNING: atoms too close: (T0378)S69.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing
WARNING: atoms too close: (T0378)E68.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing
WARNING: atoms too close: (T0378)P67.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing
WARNING: atoms too close: (T0378)L66.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing
WARNING: atoms too close: (T0378)E65.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing
WARNING: atoms too close: (T0378)V64.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing
# WARNING: incomplete conformation T0378 can't currently be optimized by undertaker
# naming current conformation panther2_TS1
# ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1
# Found a chain break before 253
# copying to AlignedFragments data structure
# naming current conformation shub_TS1
# command:Using radius: 8.0000
Metaserver mode
NUMB_ALIGNS: 255
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weight: 0.9619 eval: -0.2311 min: -0.3493 max: 2.4451
weight: 0.9283 eval: -0.1266 min: -0.3493 max: 2.4451
weight: 0.8908 eval: -0.0102 min: -0.3493 max: 2.4451
weight: 0.8792 eval: 0.0257 min: -0.3493 max: 2.4451
weight: 0.9803 eval: -0.2880 min: -0.3493 max: 2.4451
weight: 0.9186 eval: -0.0965 min: -0.3493 max: 2.4451
weight: 0.9053 eval: -0.0554 min: -0.3493 max: 2.4451
weight: 0.7897 eval: 0.3038 min: -0.3493 max: 2.4451
weight: 0.7862 eval: 0.3146 min: -0.3493 max: 2.4451
weight: 0.9782 eval: -0.2818 min: -0.3493 max: 2.4451
weight: 0.9186 eval: -0.0965 min: -0.3493 max: 2.4451
weight: 0.8994 eval: -0.0371 min: -0.3493 max: 2.4451
weight: 0.7848 eval: 0.3188 min: -0.3493 max: 2.4451
weight: 0.7887 eval: 0.3069 min: -0.3493 max: 2.4451
weight: 0.9759 eval: -0.2745 min: -0.3493 max: 2.4451
weight: 0.9191 eval: -0.0982 min: -0.3493 max: 2.4451
weight: 0.9026 eval: -0.0468 min: -0.3493 max: 2.4451
weight: 0.7847 eval: 0.3193 min: -0.3493 max: 2.4451
weight: 0.7862 eval: 0.3146 min: -0.3493 max: 2.4451
weight: 0.4803 eval: 1.2644 min: -0.3493 max: 2.4451
weight: 0.4800 eval: 1.2653 min: -0.3493 max: 2.4451
weight: 0.4813 eval: 1.2613 min: -0.3493 max: 2.4451
weight: 0.4821 eval: 1.2588 min: -0.3493 max: 2.4451
weight: 0.4804 eval: 1.2639 min: -0.3493 max: 2.4451
weight: 0.9812 eval: -0.2908 min: -0.3493 max: 2.4451
weight: 0.4803 eval: 1.2644 min: -0.3493 max: 2.4451
weight: 0.4800 eval: 1.2653 min: -0.3493 max: 2.4451
weight: 0.4813 eval: 1.2613 min: -0.3493 max: 2.4451
weight: 0.4821 eval: 1.2588 min: -0.3493 max: 2.4451
weight: 0.4804 eval: 1.2639 min: -0.3493 max: 2.4451
weight: 0.9890 eval: -0.3151 min: -0.3493 max: 2.4451
weight: 0.9893 eval: -0.3160 min: -0.3493 max: 2.4451
weight: 0.9832 eval: -0.2971 min: -0.3493 max: 2.4451
weight: 0.9829 eval: -0.2961 min: -0.3493 max: 2.4451
weight: 1.0000 eval: -0.3493 min: -0.3493 max: 2.4451
weight: 0.9785 eval: -0.2824 min: -0.3493 max: 2.4451
weight: 0.9725 eval: -0.2639 min: -0.3493 max: 2.4451
weight: 0.4800 eval: 1.2653 min: -0.3493 max: 2.4451
weight: 0.4807 eval: 1.2630 min: -0.3493 max: 2.4451
weight: 0.4821 eval: 1.2588 min: -0.3493 max: 2.4451
weight: 0.4816 eval: 1.2602 min: -0.3493 max: 2.4451
weight: 0.4762 eval: 1.2771 min: -0.3493 max: 2.4451
weight: 0.7920 eval: 0.2966 min: -0.3493 max: 2.4451
weight: 0.7879 eval: 0.3091 min: -0.3493 max: 2.4451
weight: 0.7897 eval: 0.3038 min: -0.3493 max: 2.4451
weight: 0.7833 eval: 0.3234 min: -0.3493 max: 2.4451
weight: 0.7940 eval: 0.2904 min: -0.3493 max: 2.4451
weight: 0.2089 eval: 2.1069 min: -0.3493 max: 2.4451
weight: 0.2013 eval: 2.1306 min: -0.3493 max: 2.4451
weight: 0.1177 eval: 2.3902 min: -0.3493 max: 2.4451
weight: 0.1161 eval: 2.3950 min: -0.3493 max: 2.4451
weight: 0.1000 eval: 2.4451 min: -0.3493 max: 2.4451
weight: 0.8983 eval: -0.0335 min: -0.3493 max: 2.4451
weight: 0.8939 eval: -0.0200 min: -0.3493 max: 2.4451
weight: 0.7667 eval: 0.3751 min: -0.3493 max: 2.4451
weight: 0.3146 eval: 1.7787 min: -0.3493 max: 2.4451
weight: 0.4889 eval: 1.2375 min: -0.3493 max: 2.4451
weight: 0.9207 eval: -0.1032 min: -0.3493 max: 2.4451
weight: 0.9207 eval: -0.1032 min: -0.3493 max: 2.4451
weight: 0.9181 eval: -0.0951 min: -0.3493 max: 2.4451
weight: 0.9176 eval: -0.0933 min: -0.3493 max: 2.4451
weight: 0.8522 eval: 0.1095 min: -0.3493 max: 2.4451
weight: 0.9486 eval: -0.1897 min: -0.3493 max: 2.4451
weight: 0.9528 eval: -0.2029 min: -0.3493 max: 2.4451
weight: 0.9034 eval: -0.0494 min: -0.3493 max: 2.4451
weight: 0.9603 eval: -0.2259 min: -0.3493 max: 2.4451
weight: 0.8512 eval: 0.1128 min: -0.3493 max: 2.4451
weight: 0.8074 eval: 0.2488 min: -0.3493 max: 2.4451
weight: 0.8273 eval: 0.1869 min: -0.3493 max: 2.4451
weight: 0.9707 eval: -0.2584 min: -0.3493 max: 2.4451
Adding 9012 constraints to all2.constraints
Done adding distance constraints
# command:Reading probabilities from probabilities.dat
Reading constraints from ConstraintSet all2.constraints
maxweight: 1.0000
Optimizing...
 Probability sum: -442.2372, CN propb: -442.2372 weights: 0.3438 constraints: 875
# command:Found ConstraintSet
# PrintContacts align.constraints_meta02
Number of constraints in align2.constraints 875
# command:Found ConstraintSet
# PrintContacts align_bonus.constraints_meta02
Number of constraints in align2.constraints.bonus 875
# command:Found ConstraintSet
# PrintContacts rejected.constraints_meta02
Number of constraints in rejected2.constraints 8137
# command:Found ConstraintSet
# PrintContacts rejected_bonus.constraints_meta02
Number of constraints in rejected2.constraints.bonus 8137
# command:Found ConstraintSet
# PrintContacts non_contacts.constraints_meta02
Number of constraints in noncontact2.constraints 0
# command:Found ConstraintSet
# PrintContacts non_contacts_bonus.constraints_meta02
Number of constraints in noncontact2.constraints.bonus 0
# command:Found ConstraintSet
# PrintContacts all.constraints_meta02
Number of constraints in all2.constraints 9012
# command: