# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0378/ # command:# Making conformation for sequence T0378 numbered 1 through 254 Created new target T0378 from T0378.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0378/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0378//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0378/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0378//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0378/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0378/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0378/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1v6zA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1v6zA expands to /projects/compbio/data/pdb/1v6z.pdb.gz 1v6zA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0378 read from 1v6zA/merged-good-all-a2m # 1v6zA read from 1v6zA/merged-good-all-a2m # adding 1v6zA to template set # found chain 1v6zA in template set T0378 8 :KFLRSLRERKYRLREQAFAVEGP 1v6zA 18 :RETRHLVEVLRARVGDRFTVFDG # choosing archetypes in rotamer library T0378 81 :PQPLMAVF 1v6zA 41 :EREALAEV T0378 89 :DLPAEPEPVVEGLTLLLDGVQD 1v6zA 61 :EERRPEREVGVEVVLYVALLKG T0378 112 :GNVGTILRTADWFGIRHVW 1v6zA 83 :DKLAEVVRAATELGATRIQ T0378 131 :LGTGSADV 1v6zA 103 :LVTRHSVP T0378 139 :FS 1v6zA 113 :MG T0378 141 :PKVVQASMGALA 1v6zA 119 :RRLRAVALEAAK T0378 153 :RVQPTPLKN 1v6zA 140 :VLPPIPLKA T0378 175 :PVYGAFLDGQSLYE 1v6zA 154 :QGLVAHVGATARVR T0378 190 :PLPNFTEPAILVLGSEG 1v6zA 168 :EVLDPEKPLALAVGPEG T0378 208 :GISPEVAAEITD 1v6zA 185 :GFAEEEVALLEA T0378 221 :LT 1v6zA 199 :FT T0378 223 :IPASGLSVK 1v6zA 202 :VSLGRRILR T0378 239 :VAIATAILC 1v6zA 211 :AETAALALL Number of specific fragments extracted= 14 number of extra gaps= 0 total=14 Number of alignments=1 # 1v6zA read from 1v6zA/merged-good-all-a2m # found chain 1v6zA in template set T0378 31 :KLVGEMLPFYRC 1v6zA 18 :RETRHLVEVLRA T0378 58 :PHDAEVVELPE 1v6zA 30 :RVGDRFTVFDG T0378 81 :PQPLMAVF 1v6zA 41 :EREALAEV T0378 89 :DLPAE 1v6zA 50 :DLGPP T0378 94 :PEPVV 1v6zA 64 :RPERE T0378 99 :EGLTLLLDGV 1v6zA 71 :VEVVLYVALL T0378 110 :DPGNVGTILRTADWFGIRHV 1v6zA 81 :KGDKLAEVVRAATELGATRI T0378 130 :WLGTGSADV 1v6zA 102 :PLVTRHSVP T0378 139 :FSPK 1v6zA 113 :MGEG T0378 143 :VVQASM 1v6zA 121 :LRAVAL T0378 167 :AYFRRQGI 1v6zA 127 :EAAKQSGR T0378 177 :YGAFLDGQSLYEAPLPNFTEPAILVLGSEG 1v6zA 155 :GLVAHVGATARVREVLDPEKPLALAVGPEG T0378 208 :GISPEVAAEITD 1v6zA 185 :GFAEEEVALLEA T0378 221 :LT 1v6zA 199 :FT T0378 223 :IPASGLSVK 1v6zA 202 :VSLGRRILR T0378 239 :VAIATAILCSE 1v6zA 211 :AETAALALLAL Number of specific fragments extracted= 16 number of extra gaps= 0 total=30 Number of alignments=2 # 1v6zA read from 1v6zA/merged-good-all-a2m # found chain 1v6zA in template set T0378 30 :PKLVGEMLPFYRC 1v6zA 17 :LRETRHLVEVLRA T0378 43 :RMLVGTA 1v6zA 34 :RFTVFDG T0378 79 :TTPQPLMAVFDLPAEPEPVVEGLTLLLDGVQD 1v6zA 51 :LGPPLRYRVLEERRPEREVGVEVVLYVALLKG T0378 112 :GNVGTILRTADWFGIRHV 1v6zA 83 :DKLAEVVRAATELGATRI T0378 130 :WLGTGSADVFS 1v6zA 102 :PLVTRHSVPKE T0378 141 :PKVVQAS 1v6zA 119 :RRLRAVA T0378 148 :MGALARVQPTPLKN 1v6zA 132 :SGRVVVPEVLPPIP T0378 175 :PVYGAFLDGQS 1v6zA 154 :QGLVAHVGATA T0378 187 :YEAPLPNFTEPAILVLGSEG 1v6zA 165 :RVREVLDPEKPLALAVGPEG T0378 208 :GISPEVAAEI 1v6zA 185 :GFAEEEVALL T0378 219 :DRLTIPASGLSV 1v6zA 198 :GFTPVSLGRRIL Number of specific fragments extracted= 11 number of extra gaps= 0 total=41 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gdhA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gdhA expands to /projects/compbio/data/pdb/1gdh.pdb.gz 1gdhA:# T0378 read from 1gdhA/merged-good-all-a2m # 1gdhA read from 1gdhA/merged-good-all-a2m # adding 1gdhA to template set # found chain 1gdhA in template set Warning: unaligning (T0378)K142 because of BadResidue code BAD_PEPTIDE in next template residue (1gdhA)D185 Warning: unaligning (T0378)V143 because of BadResidue code BAD_PEPTIDE at template residue (1gdhA)D185 Warning: unaligning (T0378)S204 because of BadResidue code BAD_PEPTIDE in next template residue (1gdhA)R240 Warning: unaligning (T0378)E205 because of BadResidue code BAD_PEPTIDE at template residue (1gdhA)R240 T0378 30 :PKLVGEMLPF 1gdhA 36 :IDEMIETAKS T0378 42 :CRMLVGT 1gdhA 46 :VDALLIT T0378 49 :AAMLRAVSTPH 1gdhA 59 :KEVIDRIPENI T0378 60 :DAEVVELPESF 1gdhA 91 :GIKVGNAPHGV T0378 71 :DFKRISTQTT 1gdhA 122 :EGEKMIRTRS T0378 92 :AEPEPVVE 1gdhA 132 :WPGWEPLE T0378 100 :GLTLLLDGVQ 1gdhA 147 :NKTLGIYGFG T0378 113 :NVG 1gdhA 157 :SIG T0378 116 :TILRTADWFGIR 1gdhA 161 :ALAKRAQGFDMD T0378 129 :VWLGTGSA 1gdhA 173 :IDYFDTHR T0378 139 :FSP 1gdhA 181 :ASS T0378 144 :VQA 1gdhA 186 :EAS T0378 154 :VQPTPLKNTVDTLAY 1gdhA 189 :YQATFHDSLDSLLSV T0378 174 :IPVYGAFLDGQSLYEA 1gdhA 204 :SQFFSLNAPSTPETRY T0378 192 :P 1gdhA 220 :F T0378 193 :NFTEPAILVLG 1gdhA 228 :SLPQGAIVVNT T0378 206 :GRGISPEV 1gdhA 241 :GDLVDNEL Number of specific fragments extracted= 17 number of extra gaps= 2 total=58 Number of alignments=4 # 1gdhA read from 1gdhA/merged-good-all-a2m # found chain 1gdhA in template set Warning: unaligning (T0378)K142 because of BadResidue code BAD_PEPTIDE in next template residue (1gdhA)D185 Warning: unaligning (T0378)V143 because of BadResidue code BAD_PEPTIDE at template residue (1gdhA)D185 Warning: unaligning (T0378)S204 because of BadResidue code BAD_PEPTIDE in next template residue (1gdhA)R240 Warning: unaligning (T0378)E205 because of BadResidue code BAD_PEPTIDE at template residue (1gdhA)R240 T0378 25 :FAVEG 1gdhA 25 :VIAHG T0378 30 :PKLVGEMLPF 1gdhA 36 :IDEMIETAKS T0378 42 :CRMLVGT 1gdhA 46 :VDALLIT T0378 49 :AAMLR 1gdhA 59 :KEVID T0378 54 :AVSTPHDAEVVELPESFD 1gdhA 85 :DACKARGIKVGNAPHGVT T0378 72 :FKRISTQT 1gdhA 123 :GEKMIRTR T0378 89 :DLPAEPEPVV 1gdhA 131 :SWPGWEPLEL T0378 99 :EGLTLLLDGVQ 1gdhA 146 :DNKTLGIYGFG T0378 113 :NVG 1gdhA 157 :SIG T0378 116 :TILRTADWFGIR 1gdhA 161 :ALAKRAQGFDMD T0378 129 :VWLGTGS 1gdhA 173 :IDYFDTH T0378 138 :VFSP 1gdhA 180 :RASS T0378 144 :VQA 1gdhA 186 :EAS T0378 154 :VQPTPLKNTVDTLAY 1gdhA 189 :YQATFHDSLDSLLSV T0378 174 :IPVYGAFL 1gdhA 204 :SQFFSLNA T0378 182 :DGQSLYEA 1gdhA 214 :TPETRYFF T0378 195 :TEPAILVLG 1gdhA 230 :PQGAIVVNT T0378 206 :GRGISPEV 1gdhA 241 :GDLVDNEL Number of specific fragments extracted= 18 number of extra gaps= 2 total=76 Number of alignments=5 # 1gdhA read from 1gdhA/merged-good-all-a2m # found chain 1gdhA in template set Warning: unaligning (T0378)F139 because of BadResidue code BAD_PEPTIDE in next template residue (1gdhA)D185 Warning: unaligning (T0378)S140 because of BadResidue code BAD_PEPTIDE at template residue (1gdhA)D185 Warning: unaligning (T0378)S204 because of BadResidue code BAD_PEPTIDE in next template residue (1gdhA)R240 Warning: unaligning (T0378)E205 because of BadResidue code BAD_PEPTIDE at template residue (1gdhA)R240 T0378 34 :GEMLPFYRCRMLVGTA 1gdhA 85 :DACKARGIKVGNAPHG T0378 50 :AMLRAVST 1gdhA 105 :TAEIAMLL T0378 69 :SFDFKRISTQT 1gdhA 120 :AGEGEKMIRTR T0378 89 :DLPAEPEPVVE 1gdhA 131 :SWPGWEPLELV T0378 100 :GLTLLLDGVQD 1gdhA 147 :NKTLGIYGFGS T0378 114 :VG 1gdhA 158 :IG T0378 116 :TILRTADWFGIRHVWLGTGSADV 1gdhA 161 :ALAKRAQGFDMDIDYFDTHRASS T0378 141 :PK 1gdhA 186 :EA T0378 145 :QA 1gdhA 188 :SY T0378 155 :QPTPLKNTVDTLAY 1gdhA 190 :QATFHDSLDSLLSV T0378 174 :IPVYGAFLDGQS 1gdhA 204 :SQFFSLNAPSTP T0378 186 :LYEAPLPNFTEPAILVLG 1gdhA 221 :FNKATIKSLPQGAIVVNT T0378 206 :GRGISPEV 1gdhA 241 :GDLVDNEL Number of specific fragments extracted= 13 number of extra gaps= 2 total=89 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1mxiA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0378 read from 1mxiA/merged-good-all-a2m # 1mxiA read from 1mxiA/merged-good-all-a2m # found chain 1mxiA in training set Warning: unaligning (T0378)G100 because first residue in template chain is (1mxiA)M1 T0378 101 :LTLLLDGVQDPGNVGTILRTADWFGIR 1mxiA 2 :LDIVLYEPEIPQNTGNIIRLCANTGFR T0378 129 :VWLGTGSADVF 1mxiA 29 :LHLIEPLGFTW T0378 140 :SPKVVQASMGALARVQPTPLKNTVDTLAYF 1mxiA 41 :DKRLRRSGLDYHEFAEIKRHKTFEAFLESE T0378 175 :PVYGAFLDGQSLYEA 1mxiA 74 :RLFALTTKGCPAHSQ T0378 192 :PNFTEPAILVLGSEGRGISPEVAAEI 1mxiA 89 :VKFKLGDYLMFGPETRGIPMSILNEM T0378 218 :TDRLTIP 1mxiA 117 :EQKIRIP T0378 230 :VKGHTESLNVAIATAILCSEWRR 1mxiA 124 :MTANSRSMNLSNSVAVTVYEAWR Number of specific fragments extracted= 7 number of extra gaps= 0 total=96 Number of alignments=7 # 1mxiA read from 1mxiA/merged-good-all-a2m # found chain 1mxiA in training set Warning: unaligning (T0378)G100 because first residue in template chain is (1mxiA)M1 T0378 101 :LTLLLDGVQDPGNVGTILRTADWFGIR 1mxiA 2 :LDIVLYEPEIPQNTGNIIRLCANTGFR T0378 129 :VWLGTGSADVF 1mxiA 29 :LHLIEPLGFTW T0378 140 :SPKVVQASMGALARVQPTPLKNTVDTLAYF 1mxiA 41 :DKRLRRSGLDYHEFAEIKRHKTFEAFLESE T0378 175 :PVYGAFLDGQSLYEA 1mxiA 74 :RLFALTTKGCPAHSQ T0378 192 :PNFTEPAILVLGSEGRGISPEVAAEI 1mxiA 89 :VKFKLGDYLMFGPETRGIPMSILNEM T0378 218 :TDRLTIP 1mxiA 117 :EQKIRIP T0378 230 :VKGHTESLNVAIATAILCSEWRRR 1mxiA 124 :MTANSRSMNLSNSVAVTVYEAWRQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=103 Number of alignments=8 # 1mxiA read from 1mxiA/merged-good-all-a2m # found chain 1mxiA in training set T0378 101 :LTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYF 1mxiA 2 :LDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFLESE T0378 175 :PVYGAFLDGQS 1mxiA 74 :RLFALTTKGCP T0378 188 :EAPLPNFTEPAILVLGSEGRGISPEVAAEI 1mxiA 85 :AHSQVKFKLGDYLMFGPETRGIPMSILNEM T0378 218 :TDRLTIPA 1mxiA 117 :EQKIRIPM T0378 231 :KGHTESLNVAIATAILCSEWRRR 1mxiA 125 :TANSRSMNLSNSVAVTVYEAWRQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=108 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1z85A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1z85A expands to /projects/compbio/data/pdb/1z85.pdb.gz 1z85A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1584, because occupancy 0.35 <= existing 0.650 in 1z85A Skipped atom 1586, because occupancy 0.350 <= existing 0.650 in 1z85A Skipped atom 1588, because occupancy 0.350 <= existing 0.650 in 1z85A # T0378 read from 1z85A/merged-good-all-a2m # 1z85A read from 1z85A/merged-good-all-a2m # adding 1z85A to template set # found chain 1z85A in template set Warning: unaligning (T0378)L181 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z85A)Q159 Warning: unaligning (T0378)S185 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z85A)Q159 Warning: unaligning (T0378)L186 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z85A)N160 Warning: unaligning (T0378)Y187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z85A)L161 Warning: unaligning (T0378)P224 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z85A)L202 T0378 4 :ANQIKFLRSL 1z85A 18 :EREAHHMRVV T0378 18 :YRLREQAFAVEGPK 1z85A 28 :RLKEGDVIEATDGN T0378 43 :RMLV 1z85A 43 :FSYT T0378 63 :VVELPESF 1z85A 49 :LKSLKKKT T0378 84 :LMAVFD 1z85A 57 :AAAKIV T0378 90 :LPAEPEPVVEGLTLL 1z85A 64 :VEEKEKEPTEKLSVV T0378 106 :DGVQDPGNVGTILRTADWFGIRHVWLGT 1z85A 79 :VPIGRWERTRFLIEKCVELGVDEIFFHK T0378 134 :GSADVFS 1z85A 109 :RSQHEIS T0378 141 :PK 1z85A 117 :DK T0378 143 :VVQAS 1z85A 123 :VREAA T0378 148 :MGALARVQPTPLKNT 1z85A 130 :CKRYLFPKVSFLEKL T0378 175 :PVYGAF 1z85A 149 :NVITLD T0378 188 :EA 1z85A 162 :LD T0378 192 :PNFTEPAILVLGSEG 1z85A 164 :ANLEGSITVVVGPEG T0378 208 :GISPEVAAEITDRLTI 1z85A 179 :GFSEKERELLRSSTTI Number of specific fragments extracted= 15 number of extra gaps= 0 total=123 Number of alignments=10 # 1z85A read from 1z85A/merged-good-all-a2m # found chain 1z85A in template set Warning: unaligning (T0378)L181 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z85A)Q159 Warning: unaligning (T0378)S185 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z85A)Q159 Warning: unaligning (T0378)L186 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z85A)N160 Warning: unaligning (T0378)Y187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z85A)L161 Warning: unaligning (T0378)P224 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z85A)L202 T0378 8 :KFLRSLRERKYRLREQAFAVEG 1z85A 18 :EREAHHMRVVRLKEGDVIEATD T0378 40 :YRCRMLVG 1z85A 40 :GNGFSYTC T0378 63 :VVELPESF 1z85A 49 :LKSLKKKT T0378 84 :LMAVF 1z85A 57 :AAAKI T0378 89 :DLPAEPEPVVEGLTLL 1z85A 63 :KVEEKEKEPTEKLSVV T0378 106 :DGVQDPGNVGTILRTADWFGIRHVWLGT 1z85A 79 :VPIGRWERTRFLIEKCVELGVDEIFFHK T0378 134 :GSADVFS 1z85A 109 :RSQHEIS T0378 141 :PK 1z85A 117 :DK T0378 143 :VVQAS 1z85A 123 :VREAA T0378 148 :MGALARVQPTPLKNT 1z85A 130 :CKRYLFPKVSFLEKL T0378 175 :PVYGAF 1z85A 149 :NVITLD T0378 188 :EA 1z85A 162 :LD T0378 192 :PNFTEPAILVLGSEG 1z85A 164 :ANLEGSITVVVGPEG T0378 208 :GISPEVAAEITDRLTI 1z85A 179 :GFSEKERELLRSSTTI Number of specific fragments extracted= 14 number of extra gaps= 0 total=137 Number of alignments=11 # 1z85A read from 1z85A/merged-good-all-a2m # found chain 1z85A in template set Warning: unaligning (T0378)L181 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z85A)Q159 Warning: unaligning (T0378)S185 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z85A)Q159 Warning: unaligning (T0378)E188 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z85A)N160 Warning: unaligning (T0378)A189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1z85A)L161 T0378 24 :AFAVEGPKLVGEMLPFYRC 1z85A 12 :GEVIFDEREAHHMRVVRLK T0378 43 :RMLVGTA 1z85A 34 :VIEATDG T0378 79 :TTPQPLMAVFDLPAEPEPVVEGLTLLLD 1z85A 53 :KKKTAAAKIVKVEEKEKEPTEKLSVVVP T0378 112 :GNVGTILRTADWFGIRHVWLGT 1z85A 85 :ERTRFLIEKCVELGVDEIFFHK T0378 134 :GSADVFS 1z85A 109 :RSQHEIS T0378 141 :PKVVQAS 1z85A 121 :IVVREAA T0378 148 :MGALARVQPTPLKNT 1z85A 130 :CKRYLFPKVSFLEKL T0378 173 :GIPVYGAF 1z85A 147 :SGNVITLD T0378 190 :PLPNFTEPAILVLGSEG 1z85A 162 :LDANLEGSITVVVGPEG T0378 208 :GISPEVAAEITDRLTI 1z85A 179 :GFSEKERELLRSSTTI Number of specific fragments extracted= 10 number of extra gaps= 0 total=147 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rvgA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rvgA expands to /projects/compbio/data/pdb/1rvg.pdb.gz 1rvgA:Skipped atom 597, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 599, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 601, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 603, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 605, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 607, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 609, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 611, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 613, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 615, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 617, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 619, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 621, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 623, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 625, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 627, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 629, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 631, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 633, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 635, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 637, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 639, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1021, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1023, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1025, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1027, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1029, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1031, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1033, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1035, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1037, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1326, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1328, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1330, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1332, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1334, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1336, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1338, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1340, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1342, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1344, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1346, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1348, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1350, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1352, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1354, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1356, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1358, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1360, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1362, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1364, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1581, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1583, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1585, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1587, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1589, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1591, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1593, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1595, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1597, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1599, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1601, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1603, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1605, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1607, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1609, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1611, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1613, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1615, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1617, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1619, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1621, because occupancy 0.500 <= existing 0.500 in 1rvgA Skipped atom 1623, because occupancy 0.500 <= existing 0.500 in 1rvgA # T0378 read from 1rvgA/merged-good-all-a2m # 1rvgA read from 1rvgA/merged-good-all-a2m # adding 1rvgA to template set # found chain 1rvgA in template set Warning: unaligning (T0378)E188 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rvgA)K148 T0378 31 :KLVGEMLPFYR 1rvgA 31 :QAVLEAAEEQR T0378 42 :CRMLVGTAAMLRAVSTP 1rvgA 43 :PVILALSEGAMKYGGRA T0378 100 :GLTLLLDGVQDPGNVGTILR 1rvgA 74 :PVAVHLDHGSSYESVLRALR T0378 124 :FGIRHVWLGTGSADV 1rvgA 94 :AGFTSVMIDKSHEDF T0378 141 :PKVVQAS 1rvgA 109 :ETNVRET T0378 163 :VDTLAYFRRQGIPVYGAFLDGQSLY 1rvgA 116 :RRVVEAAHAVGVTVEAELGRLAGIE T0378 194 :FTEP 1rvgA 201 :VPAP T0378 200 :LVLGS 1rvgA 205 :LVLHG T0378 206 :GRGISPEVAAEITD 1rvgA 210 :ASAVPPELVERFRA Number of specific fragments extracted= 9 number of extra gaps= 0 total=156 Number of alignments=13 # 1rvgA read from 1rvgA/merged-good-all-a2m # found chain 1rvgA in template set Warning: unaligning (T0378)Q184 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rvgA)K148 T0378 31 :KLVGEMLPFYR 1rvgA 31 :QAVLEAAEEQR T0378 42 :CRMLVGTAAMLR 1rvgA 43 :PVILALSEGAMK T0378 73 :K 1rvgA 69 :K T0378 77 :TQT 1rvgA 70 :EAR T0378 99 :EGLTLLLDGVQDPGNVGT 1rvgA 73 :VPVAVHLDHGSSYESVLR T0378 121 :ADWFGIRHVWLGTGSADV 1rvgA 91 :ALRAGFTSVMIDKSHEDF T0378 141 :PKVVQAS 1rvgA 109 :ETNVRET T0378 163 :VDTLAYFRRQGIPVYGAFLD 1rvgA 116 :RRVVEAAHAVGVTVEAELGR T0378 183 :G 1rvgA 140 :E T0378 195 :TEP 1rvgA 202 :PAP T0378 200 :LVLGS 1rvgA 205 :LVLHG T0378 206 :GRGISPEVAAEITD 1rvgA 210 :ASAVPPELVERFRA T0378 220 :RLTIP 1rvgA 249 :KINTD T0378 237 :LNVAIATAILCSEWRR 1rvgA 254 :TDLRLAFTALIREALN Number of specific fragments extracted= 14 number of extra gaps= 0 total=170 Number of alignments=14 # 1rvgA read from 1rvgA/merged-good-all-a2m # found chain 1rvgA in template set Warning: unaligning (T0378)E188 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1rvgA)K148 Warning: unaligning (T0378)T195 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1rvgA)K148 T0378 28 :EGPKLVGEMLPFYRCRMLVGTA 1rvgA 4 :TGLEILKKAREEGYGVGAFNVN T0378 50 :AMLRAVSTPHDAEVVE 1rvgA 30 :LQAVLEAAEEQRSPVI T0378 66 :LPESFDFKRIST 1rvgA 47 :ALSEGAMKYGGR T0378 100 :GLTLLLDGVQDPG 1rvgA 74 :PVAVHLDHGSSYE T0378 116 :TILR 1rvgA 87 :SVLR T0378 121 :ADWFGIRHVWLGTGSADV 1rvgA 91 :ALRAGFTSVMIDKSHEDF T0378 141 :PKVVQAS 1rvgA 109 :ETNVRET T0378 163 :VDTLAYFRRQGIPVYGAFLDGQSLY 1rvgA 116 :RRVVEAAHAVGVTVEAELGRLAGIE T0378 198 :AILVLGSE 1rvgA 203 :APLVLHGA T0378 207 :RGISPEVAAEIT 1rvgA 211 :SAVPPELVERFR Number of specific fragments extracted= 10 number of extra gaps= 0 total=180 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qwgA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0378 read from 1qwgA/merged-good-all-a2m # 1qwgA read from 1qwgA/merged-good-all-a2m # found chain 1qwgA in training set Warning: unaligning (T0378)I174 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0378)P175 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0378 23 :QAFAVEG 1qwgA 14 :GLTVVLD T0378 30 :PKLVGEMLP 1qwgA 25 :PKFVEDYLK T0378 39 :FYRCRMLVGTAAMLRAVSTPH 1qwgA 36 :GDYIDFVKFGWGTSAVIDRDV T0378 60 :DAEVVEL 1qwgA 68 :GIKVYPG T0378 67 :PESF 1qwgA 83 :SKGK T0378 72 :FKRIST 1qwgA 87 :FDEFLN T0378 120 :TADWFGIRHVWLGTGSADVFS 1qwgA 93 :ECEKLGFEAVEISDGSSDISL T0378 160 :KNTVDTLAYFRRQG 1qwgA 114 :EERNNAIKRAKDNG T0378 176 :VYGAFLDGQSLYEAPLP 1qwgA 130 :VLTEVGKKMPDKDKQLT T0378 197 :PAILVLGSEG 1qwgA 163 :DYVIIEGRES T0378 209 :ISPEVAAEIT 1qwgA 185 :VKENELDVLA Number of specific fragments extracted= 11 number of extra gaps= 1 total=191 Number of alignments=16 # 1qwgA read from 1qwgA/merged-good-all-a2m # found chain 1qwgA in training set Warning: unaligning (T0378)I174 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0378)P175 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0378 23 :QAFAVEG 1qwgA 14 :GLTVVLD T0378 30 :PKLVGEMLPF 1qwgA 25 :PKFVEDYLKV T0378 40 :YR 1qwgA 36 :GD T0378 42 :CRMLVGTAAMLR 1qwgA 39 :IDFVKFGWGTSA T0378 54 :AVSTPHDAEVVEL 1qwgA 62 :NYYKDWGIKVYPG T0378 67 :PESF 1qwgA 83 :SKGK T0378 72 :FKRISTQ 1qwgA 87 :FDEFLNE T0378 121 :ADWFGIRHVWLGTGSADVFS 1qwgA 94 :CEKLGFEAVEISDGSSDISL T0378 160 :KNTVDTLAYFRRQG 1qwgA 114 :EERNNAIKRAKDNG T0378 176 :VYGAFLDGQSLYE 1qwgA 130 :VLTEVGKKMPDKD T0378 192 :PNF 1qwgA 143 :KQL T0378 195 :TEPAILVLGSEG 1qwgA 161 :GADYVIIEGRES T0378 207 :RG 1qwgA 182 :EG T0378 209 :ISPEVAAEIT 1qwgA 185 :VKENELDVLA Number of specific fragments extracted= 14 number of extra gaps= 1 total=205 Number of alignments=17 # 1qwgA read from 1qwgA/merged-good-all-a2m # found chain 1qwgA in training set Warning: unaligning (T0378)I174 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1qwgA)M129 Warning: unaligning (T0378)P175 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1qwgA)M129 T0378 30 :PKLVGEMLPFY 1qwgA 25 :PKFVEDYLKVC T0378 50 :AMLRAVSTPHDAEVVELP 1qwgA 57 :VKEKINYYKDWGIKVYPG T0378 68 :ESFDFKRIST 1qwgA 83 :SKGKFDEFLN T0378 120 :TADWFGIRHVWLGTGSADVFSPK 1qwgA 93 :ECEKLGFEAVEISDGSSDISLEE T0378 162 :TVDTLAYFRRQG 1qwgA 116 :RNNAIKRAKDNG T0378 176 :VYGAFLDGQS 1qwgA 130 :VLTEVGKKMP T0378 197 :PAILVLGSEG 1qwgA 163 :DYVIIEGRES T0378 207 :RGISPEVAAEITD 1qwgA 183 :GKVKENELDVLAK Number of specific fragments extracted= 8 number of extra gaps= 1 total=213 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1j2rA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0378 read from 1j2rA/merged-good-all-a2m # 1j2rA read from 1j2rA/merged-good-all-a2m # found chain 1j2rA in training set Warning: unaligning (T0378)V108 because of BadResidue code BAD_PEPTIDE in next template residue (1j2rA)S141 Warning: unaligning (T0378)Q109 because of BadResidue code BAD_PEPTIDE at template residue (1j2rA)S141 T0378 30 :PKLVGEMLPFYRCRMLVGT 1j2rA 49 :GKLAAKFRASGQPVFLVRV T0378 65 :ELPESF 1j2rA 68 :GWSADY T0378 73 :KRISTQTTPQ 1j2rA 74 :AEALKQPVDA T0378 91 :PAEPEPVVE 1j2rA 84 :PSPAKVLPE T0378 100 :GL 1j2rA 131 :GI T0378 102 :TLLLDG 1j2rA 134 :TIVLCG T0378 110 :DPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMG 1j2rA 142 :TNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINH T0378 150 :ALARVQPTPLKNTVDT 1j2rA 183 :YPRIARVRSVEEILNA Number of specific fragments extracted= 8 number of extra gaps= 1 total=221 Number of alignments=19 # 1j2rA read from 1j2rA/merged-good-all-a2m # found chain 1j2rA in training set Warning: unaligning (T0378)V108 because of BadResidue code BAD_PEPTIDE in next template residue (1j2rA)S141 Warning: unaligning (T0378)Q109 because of BadResidue code BAD_PEPTIDE at template residue (1j2rA)S141 T0378 8 :KFLRSLR 1j2rA 42 :DEVVNRA T0378 30 :PKLVGEMLPF 1j2rA 49 :GKLAAKFRAS T0378 40 :YRCRMLVGT 1j2rA 60 :QPVFLVRVG T0378 66 :LPESF 1j2rA 69 :WSADY T0378 77 :TQTTPQ 1j2rA 74 :AEALKQ T0378 89 :DLPAEPEPVV 1j2rA 80 :PVDAPSPAKV T0378 99 :EGL 1j2rA 130 :RGI T0378 102 :TLLLDG 1j2rA 134 :TIVLCG T0378 110 :DPGNVGTILRTADWFGIR 1j2rA 142 :TNIGVESTARNAWELGFN T0378 129 :VWLGTGSADVFSPK 1j2rA 160 :LVIAEDACSAASAE T0378 143 :VVQASMG 1j2rA 175 :HNNSINH T0378 150 :ALARVQPTP 1j2rA 183 :YPRIARVRS T0378 162 :TVDTLAY 1j2rA 192 :VEEILNA Number of specific fragments extracted= 13 number of extra gaps= 1 total=234 Number of alignments=20 # 1j2rA read from 1j2rA/merged-good-all-a2m # found chain 1j2rA in training set Warning: unaligning (T0378)E93 because first residue in template chain is (1j2rA)M12 T0378 94 :PEPVVEGLTLLLDGVQDP 1j2rA 13 :LELNAKTTALVVIDLQEG T0378 132 :GTGSA 1j2rA 35 :AGGPH T0378 139 :FSPKVVQAS 1j2rA 40 :TADEVVNRA T0378 163 :VDTLAYFRRQGIPVYGAFLDGQS 1j2rA 49 :GKLAAKFRASGQPVFLVRVGWSA T0378 188 :EAPLPNFTE 1j2rA 72 :DYAEALKQP T0378 197 :PAILVLG 1j2rA 133 :DTIVLCG Number of specific fragments extracted= 6 number of extra gaps= 0 total=240 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2as0A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2as0A expands to /projects/compbio/data/pdb/2as0.pdb.gz 2as0A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0378 read from 2as0A/merged-good-all-a2m # 2as0A read from 2as0A/merged-good-all-a2m # adding 2as0A to template set # found chain 2as0A in template set T0378 30 :PKLVGEMLPFYR 2as0A 135 :LDVAEAIMEVEP T0378 42 :CRMLVG 2as0A 148 :IETVFE T0378 48 :TAAMLRAVSTPHDAEVVELPESF 2as0A 156 :TGRSRRREGLPEIERVLLGKEKY T0378 82 :QPLMAVFDLPAEPEPVVE 2as0A 185 :GRAKFIVDMRGQKTGFFL T0378 100 :GLTLLLDGVQD 2as0A 218 :GDRVLDVFTYT T0378 115 :GTILRTADWFGIRHVWLGTG 2as0A 229 :GGFAIHAAIAGADEVIGIDK T0378 140 :SPKVVQASMGALA 2as0A 249 :SPRAIETAKENAK T0378 153 :RVQPTP 2as0A 268 :RMKFIV T0378 160 :KNTVDTLAYFRRQGIPVYGAFLDGQSLYEAP 2as0A 274 :GSAFEEMEKLQKKGEKFDIVVLDPPAFVQHE T0378 192 :P 2as0A 305 :K Number of specific fragments extracted= 10 number of extra gaps= 0 total=250 Number of alignments=22 # 2as0A read from 2as0A/merged-good-all-a2m # found chain 2as0A in template set T0378 31 :KLVGEMLPFYRCRMLVGTAAMLRAVSTPHDAEVVELPESF 2as0A 139 :EAIMEVEPGIETVFEKNTGRSRRREGLPEIERVLLGKEKY T0378 83 :PLM 2as0A 179 :RTI T0378 86 :AVFDLPAEPEPVV 2as0A 189 :FIVDMRGQKTGFF T0378 99 :EGLTLLLDGVQ 2as0A 217 :PGDRVLDVFTY T0378 114 :VGTILRTADWFGIRHVWLGTG 2as0A 228 :TGGFAIHAAIAGADEVIGIDK T0378 140 :SPKVVQASMGALAR 2as0A 249 :SPRAIETAKENAKL T0378 154 :VQPTP 2as0A 269 :MKFIV T0378 160 :KNTVDTLAYFRRQGIPVYGAFLDGQSLYEAP 2as0A 274 :GSAFEEMEKLQKKGEKFDIVVLDPPAFVQHE T0378 192 :PN 2as0A 305 :KD T0378 195 :TEPAILVL 2as0A 327 :DGGILVTC Number of specific fragments extracted= 10 number of extra gaps= 0 total=260 Number of alignments=23 # 2as0A read from 2as0A/merged-good-all-a2m # found chain 2as0A in template set T0378 23 :QAFAVEGPKLVGEMLPFYRCRMLVGTA 2as0A 149 :ETVFEKNTGRSRRREGLPEIERVLLGK T0378 80 :TPQPLMAVFDLPAEPEPVVE 2as0A 183 :QEGRAKFIVDMRGQKTGFFL T0378 100 :GLTLL 2as0A 219 :DRVLD T0378 106 :DGVQ 2as0A 224 :VFTY T0378 114 :VGTILRTADWFGIRHVWLGTG 2as0A 228 :TGGFAIHAAIAGADEVIGIDK T0378 140 :SPKVVQASMGALA 2as0A 249 :SPRAIETAKENAK T0378 153 :RVQPTP 2as0A 268 :RMKFIV T0378 160 :KNTVDTLAYFRRQG 2as0A 274 :GSAFEEMEKLQKKG T0378 174 :IPVYGAFLDGQS 2as0A 290 :FDIVVLDPPAFV T0378 187 :YEAPLP 2as0A 302 :QHEKDL T0378 211 :PEVAAEI 2as0A 308 :KAGLRAY Number of specific fragments extracted= 11 number of extra gaps= 0 total=271 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zxxA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zxxA expands to /projects/compbio/data/pdb/1zxx.pdb.gz 1zxxA:# T0378 read from 1zxxA/merged-good-all-a2m # 1zxxA read from 1zxxA/merged-good-all-a2m # adding 1zxxA to template set # found chain 1zxxA in template set T0378 31 :KLVGEMLPFYR 1zxxA 22 :AVTRVAIANGL T0378 44 :MLVGTAAMLRAVSTP 1zxxA 33 :EVFGIRYGFAGLVAG T0378 62 :EVVELPESF 1zxxA 48 :DIFPLESED T0378 72 :FKRISTQTTP 1zxxA 57 :VAHLINVSGT T0378 90 :LPAEPEPVVE 1zxxA 69 :YSARYPEFAE T0378 100 :GLTLLLDGVQDPGNV 1zxxA 162 :RVFIVNVMGRNCGDI T0378 117 :ILRTADWFGIRHVWLGTGSADV 1zxxA 177 :AMRVGVACGADAIVIPERPYDV T0378 160 :KNTVDTLAYFRRQGI 1zxxA 199 :EEIANRLKQAQESGK T0378 195 :TEPAILVL 1zxxA 214 :DHGLVVVA T0378 205 :EGR 1zxxA 222 :EGV T0378 211 :PEVAAEITDR 1zxxA 228 :DQFMAELKKY T0378 221 :LTIPASGLSVKGHT 1zxxA 242 :VRANVLGHMQRGGT Number of specific fragments extracted= 12 number of extra gaps= 0 total=283 Number of alignments=25 # 1zxxA read from 1zxxA/merged-good-all-a2m # found chain 1zxxA in template set T0378 32 :LVGEMLPFYRCRMLVGTAAMLR 1zxxA 22 :AVTRVAIANGLEVFGIRYGFAG T0378 62 :EVVELPESF 1zxxA 48 :DIFPLESED T0378 72 :FKRISTQTTPQ 1zxxA 57 :VAHLINVSGTF T0378 90 :LPAEPEPVV 1zxxA 68 :LYSARYPEF T0378 99 :EGLTLLLDGVQDPGNV 1zxxA 161 :HRVFIVNVMGRNCGDI T0378 117 :ILRTADWFGIRHVWLGTGSADV 1zxxA 177 :AMRVGVACGADAIVIPERPYDV T0378 141 :PKVVQASMGALAR 1zxxA 199 :EEIANRLKQAQES T0378 154 :VQPTPL 1zxxA 213 :KDHGLV T0378 160 :KNTVDTLAYFRRQ 1zxxA 225 :MTADQFMAELKKY T0378 173 :GIPV 1zxxA 239 :DFDV T0378 177 :YGAFLDGQSLYEAP 1zxxA 282 :LAVGIENGKVTSHD Number of specific fragments extracted= 11 number of extra gaps= 0 total=294 Number of alignments=26 # 1zxxA read from 1zxxA/merged-good-all-a2m # found chain 1zxxA in template set T0378 17 :KYRLREQA 1zxxA 87 :EQLKKHGI T0378 25 :FAVEG 1zxxA 97 :VVVIG T0378 30 :PKLVGEMLPFYRCRMLVGTA 1zxxA 106 :YHGALQLTRHGFNSIGLPGT T0378 50 :AMLRAVSTPHDAE 1zxxA 150 :IDKIRDTASSHHR T0378 103 :LLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFS 1zxxA 163 :VFIVNVMGRNCGDIAMRVGVACGADAIVIPERPYDVEE T0378 162 :TVDTLAYFRRQGI 1zxxA 201 :IANRLKQAQESGK T0378 175 :PVYGAFLDGQS 1zxxA 215 :HGLVVVAEGVM T0378 188 :E 1zxxA 226 :T T0378 211 :PEVAAEITDR 1zxxA 228 :DQFMAELKKY T0378 221 :LTIPASGLSVKGHT 1zxxA 242 :VRANVLGHMQRGGT Number of specific fragments extracted= 10 number of extra gaps= 0 total=304 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xbiA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xbiA expands to /projects/compbio/data/pdb/1xbi.pdb.gz 1xbiA:Skipped atom 212, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 214, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 216, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 266, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 268, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 270, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 272, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 322, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 324, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 326, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 328, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 330, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 338, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 340, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 342, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 344, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 346, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 393, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 395, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 397, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 399, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 442, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 444, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 446, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 448, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 450, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 464, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 466, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 468, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 470, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 476, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 478, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 480, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 482, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 484, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 490, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 492, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 494, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 594, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 596, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 598, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 600, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 829, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 831, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 833, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 835, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 837, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 843, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 845, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 847, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 849, because occupancy 0.350 <= existing 0.650 in 1xbiA Skipped atom 851, because occupancy 0.350 <= existing 0.650 in 1xbiA # T0378 read from 1xbiA/merged-good-all-a2m # 1xbiA read from 1xbiA/merged-good-all-a2m # adding 1xbiA to template set # found chain 1xbiA in template set Warning: unaligning (T0378)A4 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xbiA)E12 Warning: unaligning (T0378)N5 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xbiA)E12 Warning: unaligning (T0378)E35 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xbiA)A37 Warning: unaligning (T0378)M36 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xbiA)A37 T0378 1 :MLS 1xbiA 8 :KVP T0378 6 :QIKFLRSL 1xbiA 13 :IQKELLDA T0378 22 :EQAFAVEGPKLVG 1xbiA 23 :KAQKIKKGANEVT T0378 37 :LPFYRCRMLVGTAA 1xbiA 38 :VERGIAKLVIIAED T0378 55 :VSTPH 1xbiA 52 :VKPEE T0378 60 :DAEVVELPESFDFKRISTQTTPQPLMAVFDL 1xbiA 69 :GIPYAYVASKQDLGKAAGLEVAASSVAIINE Number of specific fragments extracted= 6 number of extra gaps= 2 total=310 Number of alignments=28 # 1xbiA read from 1xbiA/merged-good-all-a2m # found chain 1xbiA in template set Warning: unaligning (T0378)A4 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xbiA)E12 Warning: unaligning (T0378)N5 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xbiA)E12 Warning: unaligning (T0378)E35 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xbiA)A37 Warning: unaligning (T0378)M36 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xbiA)A37 T0378 1 :MLS 1xbiA 8 :KVP T0378 6 :QIKFLRSLRER 1xbiA 13 :IQKELLDAVAK T0378 23 :QAFAVEGPKLVG 1xbiA 24 :AQKIKKGANEVT T0378 37 :LPFYRCRMLVGT 1xbiA 38 :VERGIAKLVIIA T0378 49 :AAMLR 1xbiA 55 :EEVVA T0378 54 :AVSTPHDAEVVELPESFDFKRISTQTTPQPLMAVFDLP 1xbiA 63 :YLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEG Number of specific fragments extracted= 6 number of extra gaps= 2 total=316 Number of alignments=29 # 1xbiA read from 1xbiA/merged-good-all-a2m # found chain 1xbiA in template set Warning: unaligning (T0378)A4 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xbiA)E12 Warning: unaligning (T0378)N5 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xbiA)E12 Warning: unaligning (T0378)E35 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1xbiA)A37 Warning: unaligning (T0378)M36 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1xbiA)A37 T0378 1 :MLS 1xbiA 8 :KVP T0378 6 :QIKFLRSL 1xbiA 13 :IQKELLDA T0378 21 :REQAFAVEGPKLVG 1xbiA 22 :AKAQKIKKGANEVT T0378 37 :LPFYRCRMLVGTA 1xbiA 38 :VERGIAKLVIIAE T0378 50 :AMLRAVSTPHDAEVVELP 1xbiA 58 :VAHLPYLCEEKGIPYAYV T0378 68 :ESFDFKRISTQTTPQPLMAVFDLPA 1xbiA 77 :SKQDLGKAAGLEVAASSVAIINEGD Number of specific fragments extracted= 6 number of extra gaps= 2 total=322 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bmtA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bmtA expands to /projects/compbio/data/pdb/1bmt.pdb.gz 1bmtA:# T0378 read from 1bmtA/merged-good-all-a2m # 1bmtA read from 1bmtA/merged-good-all-a2m # adding 1bmtA to template set # found chain 1bmtA in template set T0378 2 :LSANQIKFLRSLRER 1bmtA 713 :MFLPQVVKSARVMKQ T0378 33 :VGEML 1bmtA 728 :AVAYL T0378 49 :AAMLRAVSTPHD 1bmtA 733 :EPFIEASKEQGK T0378 99 :EGLTLLLDGVQ 1bmtA 745 :TNGKMVIATVK T0378 110 :DPGNVGT 1bmtA 757 :DVHDIGK T0378 117 :ILRTADWFGIR 1bmtA 766 :VGVVLQCNNYE T0378 129 :VWLGTGSA 1bmtA 777 :IVDLGVMV T0378 161 :NTVDTLAYFRRQGIPVYGAFLD 1bmtA 785 :PAEKILRTAKEVNADLIGLSGL T0378 192 :P 1bmtA 807 :I T0378 193 :NFTEP 1bmtA 825 :GFTIP T0378 200 :LVLGS 1bmtA 830 :LLIGG Number of specific fragments extracted= 11 number of extra gaps= 0 total=333 Number of alignments=31 # 1bmtA read from 1bmtA/merged-good-all-a2m # found chain 1bmtA in template set T0378 2 :LSANQIKFLRSLRER 1bmtA 713 :MFLPQVVKSARVMKQ T0378 19 :RL 1bmtA 730 :AY T0378 30 :PKLVGEMLPF 1bmtA 733 :EPFIEASKEQ T0378 40 :Y 1bmtA 744 :K T0378 42 :CRMLVGT 1bmtA 747 :GKMVIAT T0378 49 :AAMLRAVSTPHDAEVVELPESFDFKR 1bmtA 763 :KNIVGVVLQCNNYEIVDLGVMVPAEK T0378 117 :ILRTADWFGIRHVWLGTGS 1bmtA 789 :ILRTAKEVNADLIGLSGLI T0378 141 :PKVV 1bmtA 808 :TPSL T0378 160 :KNTVDTLAYFRRQGIP 1bmtA 812 :DEMVNVAKEMERQGFT T0378 176 :VYGAFLDG 1bmtA 829 :PLLIGGAT Number of specific fragments extracted= 10 number of extra gaps= 0 total=343 Number of alignments=32 # 1bmtA read from 1bmtA/merged-good-all-a2m # found chain 1bmtA in template set T0378 29 :GPKLVGEMLPFYRCRMLVGTAAMLRAVSTPHD 1bmtA 700 :GMNVVGDLFGEGKMFLPQVVKSARVMKQAVAY T0378 69 :SFDFKRISTQTTPQP 1bmtA 733 :EPFIEASKEQGKTNG T0378 101 :LTLLLDGVQDPGNVGT 1bmtA 748 :KMVIATVKGDVHDIGK T0378 117 :ILRTADWFGIR 1bmtA 766 :VGVVLQCNNYE T0378 131 :LGTGSAD 1bmtA 777 :IVDLGVM T0378 160 :KNTVDTLAYFRRQGIPVYGAFLDGQS 1bmtA 784 :VPAEKILRTAKEVNADLIGLSGLITP T0378 197 :PAILVLGS 1bmtA 828 :IPLLIGGA Number of specific fragments extracted= 7 number of extra gaps= 0 total=350 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xrtA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xrtA expands to /projects/compbio/data/pdb/1xrt.pdb.gz 1xrtA:# T0378 read from 1xrtA/merged-good-all-a2m # 1xrtA read from 1xrtA/merged-good-all-a2m # adding 1xrtA to template set # found chain 1xrtA in template set Warning: unaligning (T0378)C42 because first residue in template chain is (1xrtA)M1 Warning: unaligning (T0378)Q82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xrtA)D23 Warning: unaligning (T0378)P83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xrtA)D23 Warning: unaligning (T0378)S185 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xrtA)L186 Warning: unaligning (T0378)L186 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xrtA)L186 Warning: unaligning (T0378)Y187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xrtA)A187 Warning: unaligning (T0378)E188 because of BadResidue code BAD_PEPTIDE at template residue (1xrtA)Y188 T0378 43 :RMLVGTA 1xrtA 2 :LKLIVKN T0378 74 :RISTQTTP 1xrtA 14 :PSQNLEGE T0378 84 :LMAV 1xrtA 24 :ILVE T0378 88 :FDLPAEPEPVVE 1xrtA 31 :IKKIDKNILVPE T0378 100 :GLTLLLDGVQDPG 1xrtA 56 :GFIDIHVHLRDPG T0378 113 :NVGTILRTADWFGIRHVWLGTGSADVFSPK 1xrtA 74 :DIESGSRCAVAGGFTTIVCMPNTNPPIDNT T0378 143 :VVQAS 1xrtA 109 :ILQKS T0378 148 :MGALARV 1xrtA 145 :AGCVAFT T0378 155 :QPTPLKNTVDTLAYFRRQG 1xrtA 156 :PVMDSSVMRKALELASQLG T0378 175 :PVYGAFLDGQ 1xrtA 175 :VPIMDHCEDD T0378 196 :EPAILV 1xrtA 225 :GGHVHI Number of specific fragments extracted= 11 number of extra gaps= 2 total=361 Number of alignments=34 # 1xrtA read from 1xrtA/merged-good-all-a2m # found chain 1xrtA in template set Warning: unaligning (T0378)C42 because first residue in template chain is (1xrtA)M1 Warning: unaligning (T0378)A61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xrtA)E44 Warning: unaligning (T0378)E62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xrtA)E44 Warning: unaligning (T0378)S185 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xrtA)L186 Warning: unaligning (T0378)L186 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xrtA)L186 Warning: unaligning (T0378)Y187 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xrtA)A187 Warning: unaligning (T0378)E188 because of BadResidue code BAD_PEPTIDE at template residue (1xrtA)Y188 T0378 43 :RMLVGTA 1xrtA 2 :LKLIVKN T0378 50 :AMLR 1xrtA 14 :PSQN T0378 54 :AVSTPHD 1xrtA 36 :KNILVPE T0378 63 :VVELPE 1xrtA 45 :IIDAKG T0378 70 :F 1xrtA 51 :L T0378 84 :LMAV 1xrtA 52 :IVCP T0378 100 :GLTLLLDGVQDPG 1xrtA 56 :GFIDIHVHLRDPG T0378 113 :NVGTILRTADWFGIRHVWLGTGSADVFSPK 1xrtA 74 :DIESGSRCAVAGGFTTIVCMPNTNPPIDNT T0378 143 :VVQASMGALARVQPTPL 1xrtA 105 :VVNYILQKSKSVGLCRV T0378 160 :K 1xrtA 134 :K T0378 162 :TVDTLAYFRRQG 1xrtA 163 :MRKALELASQLG T0378 175 :PVYGAFLDGQ 1xrtA 175 :VPIMDHCEDD T0378 195 :TEPAIL 1xrtA 225 :GGHVHI T0378 210 :SPEVAAEITD 1xrtA 235 :TKLSLEIIEF T0378 220 :RLTI 1xrtA 253 :TCEV Number of specific fragments extracted= 15 number of extra gaps= 2 total=376 Number of alignments=35 # 1xrtA read from 1xrtA/merged-good-all-a2m # found chain 1xrtA in template set Warning: unaligning (T0378)C42 because first residue in template chain is (1xrtA)M1 Warning: unaligning (T0378)Q82 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xrtA)D23 Warning: unaligning (T0378)P83 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xrtA)D23 Warning: unaligning (T0378)E99 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xrtA)E44 Warning: unaligning (T0378)S185 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xrtA)L186 Warning: unaligning (T0378)E188 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xrtA)L186 Warning: unaligning (T0378)A189 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xrtA)A187 Warning: unaligning (T0378)P190 because of BadResidue code BAD_PEPTIDE at template residue (1xrtA)Y188 Warning: unaligning (T0378)L228 because of BadResidue code BAD_PEPTIDE in next template residue (1xrtA)L262 Warning: unaligning (T0378)S229 because of BadResidue code BAD_PEPTIDE at template residue (1xrtA)L262 T0378 43 :RMLVGTA 1xrtA 2 :LKLIVKN T0378 77 :TQTTP 1xrtA 17 :NLEGE T0378 84 :LMAV 1xrtA 24 :ILVE T0378 88 :FDLPAEPEPVV 1xrtA 32 :KKIDKNILVPE T0378 100 :GLTLLLDGVQDPG 1xrtA 56 :GFIDIHVHLRDPG T0378 113 :NVGTILRTADWFGIRHVWLGTGSADVFS 1xrtA 74 :DIESGSRCAVAGGFTTIVCMPNTNPPID T0378 141 :PKVVQASMG 1xrtA 107 :NYILQKSKS T0378 151 :LARVQPTPLKN 1xrtA 116 :VGLCRVLPTGT T0378 162 :TVDTLAYFRRQGIPV 1xrtA 163 :MRKALELASQLGVPI T0378 178 :GAFLDGQ 1xrtA 178 :MDHCEDD T0378 197 :PAILV 1xrtA 226 :GHVHI T0378 210 :SPEVAAEI 1xrtA 235 :TKLSLEII T0378 218 :TDRLTIPASG 1xrtA 251 :KITCEVNPNH Number of specific fragments extracted= 13 number of extra gaps= 4 total=389 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1k3rA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1k3rA expands to /projects/compbio/data/pdb/1k3r.pdb.gz 1k3rA:# T0378 read from 1k3rA/merged-good-all-a2m # 1k3rA read from 1k3rA/merged-good-all-a2m # adding 1k3rA to template set # found chain 1k3rA in template set T0378 100 :GLTLLLD 1k3rA 5 :DLSLFIP T0378 107 :GVQD 1k3rA 17 :ETGD T0378 111 :PGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALA 1k3rA 25 :TYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMDT T0378 153 :RVQPTPL 1k3rA 74 :VFPIMRE T0378 160 :KN 1k3rA 88 :PP T0378 181 :LDGQSLYEAPLP 1k3rA 90 :LRTPHHPTGKPV T0378 193 :NFTEPAILVLGSEGRGISP 1k3rA 208 :RGAREAAILFGGPYKGLPE T0378 217 :ITDRLTIPASGLSVKGHTESLNVAIATAILCSEW 1k3rA 227 :IDADIWVNTLPGQCTETVRTEEAVLATLSVFNML Number of specific fragments extracted= 8 number of extra gaps= 0 total=397 Number of alignments=37 # 1k3rA read from 1k3rA/merged-good-all-a2m # found chain 1k3rA in template set T0378 100 :GLTLLLDG 1k3rA 5 :DLSLFIPD T0378 108 :VQD 1k3rA 18 :TGD T0378 112 :GNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALAR 1k3rA 26 :YKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMDTP T0378 167 :AYFR 1k3rA 68 :QYLR T0378 177 :YGAFLDGQSLYEAP 1k3rA 185 :VVVATSRNASPITS T0378 194 :F 1k3rA 199 :I T0378 195 :TEPAILVLGSEGRGISP 1k3rA 210 :AREAAILFGGPYKGLPE T0378 217 :ITDRLTIPASGLSVKGHTESLNVAIATAILCSEW 1k3rA 227 :IDADIWVNTLPGQCTETVRTEEAVLATLSVFNML Number of specific fragments extracted= 8 number of extra gaps= 0 total=405 Number of alignments=38 # 1k3rA read from 1k3rA/merged-good-all-a2m # found chain 1k3rA in template set T0378 98 :VEGLTLLLDG 1k3rA 3 :RVDLSLFIPD T0378 112 :G 1k3rA 19 :G T0378 114 :VGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALAR 1k3rA 28 :VVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMDTP T0378 167 :AYFR 1k3rA 68 :QYLR T0378 181 :LDGQ 1k3rA 77 :IMRE T0378 188 :EAPLPNFTE 1k3rA 81 :LKHVGILPP T0378 197 :PAILVLGSEGRGISP 1k3rA 212 :EAAILFGGPYKGLPE T0378 218 :TDRLTIPASGLSVKGHTESLNVAIATAILCS 1k3rA 228 :DADIWVNTLPGQCTETVRTEEAVLATLSVFN Number of specific fragments extracted= 8 number of extra gaps= 0 total=413 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1x7oA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1x7oA expands to /projects/compbio/data/pdb/1x7o.pdb.gz 1x7oA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0378 read from 1x7oA/merged-good-all-a2m # 1x7oA read from 1x7oA/merged-good-all-a2m # adding 1x7oA to template set # found chain 1x7oA in template set Warning: unaligning (T0378)S3 because first residue in template chain is (1x7oA)R18 Warning: unaligning (T0378)K73 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1x7oA)E95 Warning: unaligning (T0378)R74 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1x7oA)E95 Warning: unaligning (T0378)Q78 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1x7oA)E101 Warning: unaligning (T0378)T79 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1x7oA)E101 Warning: unaligning (T0378)R253 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1x7oA)R282 T0378 4 :ANQIKFLRSL 1x7oA 19 :NARFQQWQAL T0378 14 :RERKYRLREQAFAVEGPKLVGEMLPFYR 1x7oA 30 :GNRNKRTRAGEFLVMGVRPISLAVEHGW T0378 42 :CRMLVGTA 1x7oA 59 :VRTLLYDG T0378 50 :AMLRAVSTPHDAEVVELPESF 1x7oA 72 :KWARELLRTVRTEQIAMAPDL T0378 72 :F 1x7oA 93 :L T0378 75 :I 1x7oA 96 :L T0378 76 :ST 1x7oA 98 :EK T0378 80 :TPQPLMAVFDLPAEPEPVVE 1x7oA 102 :APPEVVAVVEMPADDLDRIP T0378 100 :G 1x7oA 125 :D T0378 101 :LTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKN 1x7oA 127 :LGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPS T0378 162 :TVDTLAYFRRQG 1x7oA 191 :VMDWVEARRAAG T0378 174 :IPVYGAFLDGQSLYEA 1x7oA 205 :IVLVGTDEHGDCDVFD T0378 192 :PNFTEPAILVLGSEGRGISPEVAAEITDRLTIP 1x7oA 221 :FDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIP T0378 230 :VKGHTESLNVAIATAILCSEWRR 1x7oA 254 :MAGSASSLNAANAATAILYEAVR Number of specific fragments extracted= 14 number of extra gaps= 3 total=427 Number of alignments=40 # 1x7oA read from 1x7oA/merged-good-all-a2m # found chain 1x7oA in template set Warning: unaligning (T0378)S3 because first residue in template chain is (1x7oA)R18 Warning: unaligning (T0378)K73 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1x7oA)E95 Warning: unaligning (T0378)R74 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1x7oA)E95 Warning: unaligning (T0378)Q78 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1x7oA)E101 Warning: unaligning (T0378)T79 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1x7oA)E101 T0378 4 :ANQIKFLRSLRER 1x7oA 19 :NARFQQWQALLGN T0378 17 :KYRLREQAFAVEGPKLVGEMLPF 1x7oA 33 :NKRTRAGEFLVMGVRPISLAVEH T0378 40 :YRCRMLVGTA 1x7oA 57 :WPVRTLLYDG T0378 50 :AMLRAVSTPHDAEVVELPESF 1x7oA 72 :KWARELLRTVRTEQIAMAPDL T0378 72 :F 1x7oA 93 :L T0378 75 :IS 1x7oA 96 :LG T0378 77 :T 1x7oA 99 :K T0378 80 :TPQPLMAVFDLPAEPEPVV 1x7oA 102 :APPEVVAVVEMPADDLDRI T0378 99 :EG 1x7oA 124 :ED T0378 101 :LTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYF 1x7oA 127 :LGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVMDWV T0378 170 :RRQG 1x7oA 199 :RAAG T0378 174 :IPVYGAFLDGQSLYEA 1x7oA 205 :IVLVGTDEHGDCDVFD T0378 192 :PNFTEPAILVLGSEGRGISPEVAAEITDRLTIP 1x7oA 221 :FDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIP T0378 230 :VKGHTESLNVAIATAILCSEWRRR 1x7oA 254 :MAGSASSLNAANAATAILYEAVRQ Number of specific fragments extracted= 14 number of extra gaps= 2 total=441 Number of alignments=41 # 1x7oA read from 1x7oA/merged-good-all-a2m # found chain 1x7oA in template set Warning: unaligning (T0378)S3 because first residue in template chain is (1x7oA)R18 Warning: unaligning (T0378)K73 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1x7oA)E95 Warning: unaligning (T0378)R74 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1x7oA)E95 Warning: unaligning (T0378)Q78 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1x7oA)E101 Warning: unaligning (T0378)T79 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1x7oA)E101 T0378 4 :ANQIKFLRS 1x7oA 19 :NARFQQWQA T0378 13 :LRERKYRLREQAFAVEGPKLVGEMLPFYRCRMLVGTA 1x7oA 29 :LGNRNKRTRAGEFLVMGVRPISLAVEHGWPVRTLLYD T0378 50 :AMLRAVSTPHDAEVVELPESFDF 1x7oA 71 :SKWARELLRTVRTEQIAMAPDLL T0378 75 :IS 1x7oA 96 :LG T0378 77 :T 1x7oA 99 :K T0378 80 :TPQPLMAVFDLPAEPEPVVE 1x7oA 102 :APPEVVAVVEMPADDLDRIP T0378 100 :GLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKN 1x7oA 126 :FLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPS T0378 162 :TVDTLAYFRRQG 1x7oA 191 :VMDWVEARRAAG T0378 174 :IPVYGAFLDGQS 1x7oA 205 :IVLVGTDEHGDC T0378 188 :EAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPA 1x7oA 217 :DVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIPM T0378 231 :KGHTESLNVAIATAILCSEWRRRS 1x7oA 255 :AGSASSLNAANAATAILYEAVRQR Number of specific fragments extracted= 11 number of extra gaps= 2 total=452 Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gz0A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gz0A expands to /projects/compbio/data/pdb/1gz0.pdb.gz 1gz0A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0378 read from 1gz0A/merged-good-all-a2m # 1gz0A read from 1gz0A/merged-good-all-a2m # adding 1gz0A to template set # found chain 1gz0A in template set Warning: unaligning (T0378)A24 because first residue in template chain is (1gz0A)S2 T0378 25 :FAVEGPKLVGEMLPFYR 1gz0A 3 :EMIYGIHAVQALLERAP T0378 42 :CRMLVGTAAM 1gz0A 22 :FQEVFILKGR T0378 56 :STPH 1gz0A 32 :EDKR T0378 60 :DAEVVELPESF 1gz0A 47 :GVVIQLANRQY T0378 72 :FKRISTQTTPQPLMAVFD 1gz0A 58 :LDEKSDGAVHQGIIARVK T0378 91 :PAEPEPVVE 1gz0A 76 :PGRQYQEND T0378 100 :GLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEA 1gz0A 95 :PFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQ T0378 192 :PNFTEPAILVLGSEGRGISPEVAAEITDRLTIP 1gz0A 185 :SKMTGRLALVMGAEGEGMRRLTREHCDELISIP T0378 230 :VKGHTESLNVAIATAILCSEWRR 1gz0A 218 :MAGSVSSLNVSVATGICLFEAVR Number of specific fragments extracted= 9 number of extra gaps= 0 total=461 Number of alignments=43 # 1gz0A read from 1gz0A/merged-good-all-a2m # found chain 1gz0A in template set Warning: unaligning (T0378)A24 because first residue in template chain is (1gz0A)S2 T0378 25 :FAVEGPKLVGEMLPFYR 1gz0A 3 :EMIYGIHAVQALLERAP T0378 42 :CRMLVGT 1gz0A 22 :FQEVFIL T0378 49 :AAMLR 1gz0A 37 :LPLIH T0378 55 :VSTPHDAEVVELPESF 1gz0A 42 :ALESQGVVIQLANRQY T0378 72 :FKRISTQTTPQPLMAVF 1gz0A 58 :LDEKSDGAVHQGIIARV T0378 89 :DLPAEPEPVV 1gz0A 76 :PGRQYQENDL T0378 99 :EGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEA 1gz0A 94 :QPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQ T0378 192 :PNFTEPAILVLGSEGRGISPEVAAEITDRLTIP 1gz0A 185 :SKMTGRLALVMGAEGEGMRRLTREHCDELISIP T0378 230 :VKGHTESLNVAIATAILCSEWRRR 1gz0A 218 :MAGSVSSLNVSVATGICLFEAVRQ Number of specific fragments extracted= 9 number of extra gaps= 0 total=470 Number of alignments=44 # 1gz0A read from 1gz0A/merged-good-all-a2m # found chain 1gz0A in template set Warning: unaligning (T0378)A24 because first residue in template chain is (1gz0A)S2 T0378 25 :FAVEGPKLVGEMLPFY 1gz0A 3 :EMIYGIHAVQALLERA T0378 41 :RCRMLVGTA 1gz0A 20 :ERFQEVFIL T0378 50 :AMLRAVSTPHDAEVVELPESFDFKRISTQTTPQPLMAVFDLPAEPEPVVE 1gz0A 36 :LLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDL T0378 100 :GLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQS 1gz0A 95 :PFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH T0378 188 :EAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPA 1gz0A 181 :TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPM T0378 231 :KGHTESLNVAIATAILCSEWRRR 1gz0A 219 :AGSVSSLNVSVATGICLFEAVRQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=476 Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nxzA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nxzA expands to /projects/compbio/data/pdb/1nxz.pdb.gz 1nxzA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0378 read from 1nxzA/merged-good-all-a2m # 1nxzA read from 1nxzA/merged-good-all-a2m # adding 1nxzA to template set # found chain 1nxzA in template set T0378 59 :HDAEVVELPESF 1nxzA 13 :ENQTQCYLSEDA T0378 72 :FKRISTQTT 1nxzA 25 :ANHVARVLR T0378 81 :PQPLMAVFD 1nxzA 45 :GSNHIYPAK T0378 100 :GLTLLLDGVQDPGNVGTILRTAD 1nxzA 79 :KIHLGQVISRGERMEFTIQKSVE T0378 124 :FGIRHVWLGT 1nxzA 102 :LGVNVITPLW T0378 134 :GSADVFSPK 1nxzA 114 :RCGVKLDAE T0378 143 :VVQASMGALA 1nxzA 131 :WQKIAIAACE T0378 153 :RVQPTPLKNTVDTLA 1nxzA 147 :VPEIRPLMKLQDWCA T0378 173 :GIPVYGAFLDGQSLYEA 1nxzA 165 :GALKLNLHPRAHYSIKT T0378 191 :LPNF 1nxzA 182 :LPTI T0378 195 :TEPAILVLGSEG 1nxzA 187 :AGGVRLLIGSEG T0378 208 :GISPEVAAEITDR 1nxzA 199 :GLSAQEIAQTEQQ T0378 221 :LTIPASGLSVK 1nxzA 214 :TEILLGKRVLR T0378 236 :SLNVAIATAILCSEW 1nxzA 225 :TETASLAAISALQIC Number of specific fragments extracted= 14 number of extra gaps= 0 total=490 Number of alignments=46 # 1nxzA read from 1nxzA/merged-good-all-a2m # found chain 1nxzA in template set T0378 47 :GTAAMLR 1nxzA 20 :LSEDAAN T0378 54 :AVSTPHDAE 1nxzA 31 :VLRMTEGEQ T0378 63 :VVELPESF 1nxzA 54 :IIESNKKS T0378 84 :LMAVF 1nxzA 62 :VKVEI T0378 89 :DLPAEPEPVVEGLTLLLDGVQDPGNVG 1nxzA 68 :GRELADKESHLKIHLGQVISRGERMEF T0378 117 :ILRTADWFGIRHVWLGT 1nxzA 95 :TIQKSVELGVNVITPLW T0378 134 :GSADVFSPK 1nxzA 114 :RCGVKLDAE T0378 143 :VVQASMGALAR 1nxzA 131 :WQKIAIAACEQ T0378 154 :VQPTPLKNTVDTLA 1nxzA 148 :PEIRPLMKLQDWCA T0378 173 :GIPVYGAFLDGQ 1nxzA 165 :GALKLNLHPRAH T0378 186 :LYEAPLPNFT 1nxzA 177 :YSIKTLPTIP T0378 196 :EPAILVLGSEG 1nxzA 188 :GGVRLLIGSEG T0378 208 :GISPEVAAEITDR 1nxzA 199 :GLSAQEIAQTEQQ T0378 221 :LTIPASGLSVKGHTESLNVAIATAIL 1nxzA 214 :TEILLGKRVLRTETASLAAISALQIC Number of specific fragments extracted= 14 number of extra gaps= 0 total=504 Number of alignments=47 # 1nxzA read from 1nxzA/merged-good-all-a2m # found chain 1nxzA in template set T0378 84 :LMAVFDLPAEPEPV 1nxzA 62 :VKVEILGRELADKE T0378 100 :GLTLLLDGVQDPG 1nxzA 79 :KIHLGQVISRGER T0378 115 :GTILRT 1nxzA 94 :FTIQKS T0378 122 :DWFGIRHVWLGT 1nxzA 100 :VELGVNVITPLW T0378 134 :GSADV 1nxzA 114 :RCGVK T0378 139 :FSPKVVQAS 1nxzA 131 :WQKIAIAAC T0378 148 :MGALARVQPTPLKNTVDTLA 1nxzA 142 :CGRNIVPEIRPLMKLQDWCA T0378 173 :GIPVYGAFLDGQS 1nxzA 165 :GALKLNLHPRAHY T0378 188 :EAPLPN 1nxzA 178 :SIKTLP T0378 194 :FTEPAILVLGSEG 1nxzA 186 :PAGGVRLLIGSEG T0378 208 :GISPEVAAEITDR 1nxzA 199 :GLSAQEIAQTEQQ T0378 221 :LTIPASGLSVKGHTESLNVAIATAI 1nxzA 214 :TEILLGKRVLRTETASLAAISALQI Number of specific fragments extracted= 12 number of extra gaps= 0 total=516 Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1h1yA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1h1yA expands to /projects/compbio/data/pdb/1h1y.pdb.gz 1h1yA:# T0378 read from 1h1yA/merged-good-all-a2m # 1h1yA read from 1h1yA/merged-good-all-a2m # adding 1h1yA to template set # found chain 1h1yA in template set T0378 28 :EGPKLVGEMLPFYRCRMLVGT 1h1yA 50 :IGAPVIQSLRKHTKAYLDCHL T0378 107 :GVQDPGN 1h1yA 71 :MVTNPSD T0378 119 :R 1h1yA 81 :P T0378 121 :ADWFGIRHVWLGTGSAD 1h1yA 82 :LAKAGASGFTFHIEVSR T0378 160 :KNTVDTLAYFRRQGIPVYGAFLDGQSL 1h1yA 99 :DNWQELIQSIKAKGMRPGVSLRPGTPV T0378 188 :EA 1h1yA 126 :EE T0378 192 :P 1h1yA 128 :V T0378 194 :FTEP 1h1yA 134 :AENP T0378 198 :AILVLGS 1h1yA 140 :LVLVMTV Number of specific fragments extracted= 9 number of extra gaps= 0 total=525 Number of alignments=49 # 1h1yA read from 1h1yA/merged-good-all-a2m # found chain 1h1yA in template set T0378 27 :VEGPKLVGEMLPFYRCRML 1h1yA 49 :TIGAPVIQSLRKHTKAYLD T0378 104 :LLDGVQDPGN 1h1yA 68 :CHLMVTNPSD T0378 121 :ADWFGIRHVWLGTGSAD 1h1yA 82 :LAKAGASGFTFHIEVSR T0378 160 :KNTVDTLAYFRRQGIPVYGAFLDG 1h1yA 99 :DNWQELIQSIKAKGMRPGVSLRPG T0378 186 :LYEAPL 1h1yA 123 :TPVEEV T0378 195 :TEP 1h1yA 135 :ENP T0378 198 :AILVLGSEG 1h1yA 140 :LVLVMTVEP Number of specific fragments extracted= 7 number of extra gaps= 0 total=532 Number of alignments=50 # 1h1yA read from 1h1yA/merged-good-all-a2m # found chain 1h1yA in template set T0378 30 :PKLVGEMLPFYRCRMLVGTA 1h1yA 21 :AAEADRMVRLGADWLHMDIM T0378 66 :LPESFDFKRISTQTTP 1h1yA 49 :TIGAPVIQSLRKHTKA T0378 100 :GLTL 1h1yA 65 :YLDC T0378 105 :LDGVQDPGNV 1h1yA 69 :HLMVTNPSDY T0378 119 :R 1h1yA 81 :P T0378 121 :ADWFGIRHVWLGTGSAD 1h1yA 82 :LAKAGASGFTFHIEVSR T0378 160 :KNTVDTLAYFRRQGIPVYGAFLDGQ 1h1yA 99 :DNWQELIQSIKAKGMRPGVSLRPGT T0378 188 :EAPLPN 1h1yA 124 :PVEEVF T0378 197 :PAILVLGS 1h1yA 139 :ELVLVMTV Number of specific fragments extracted= 9 number of extra gaps= 0 total=541 Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1v2xA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0378 read from 1v2xA/merged-good-all-a2m # 1v2xA read from 1v2xA/merged-good-all-a2m # found chain 1v2xA in training set T0378 4 :ANQIKFLRSLRERKYR 1v2xA 3 :ERTEARRRRIEEVLRR T0378 97 :VVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFS 1v2xA 19 :RQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPT T0378 147 :SMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAP 1v2xA 67 :SGGSHKWVYLRVHPDLHEAFRFLKERGFTVYATALREDARDFRE T0378 192 :PNFTEPAILVLGSEGRGISPEVAAEITDRLTIP 1v2xA 111 :VDYTKPTAVLFGAEKWGVSEEALALADGAIKIP T0378 230 :VKGHTESLNVAIATAILCSEWRR 1v2xA 144 :MLGMVQSLNVSVAAAVILFEAQR Number of specific fragments extracted= 5 number of extra gaps= 0 total=546 Number of alignments=52 # 1v2xA read from 1v2xA/merged-good-all-a2m # found chain 1v2xA in training set T0378 4 :ANQIKFLRSLRERKYRL 1v2xA 2 :RERTEARRRRIEEVLRR T0378 97 :VVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFS 1v2xA 19 :RQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPT T0378 146 :ASMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAP 1v2xA 66 :TSGGSHKWVYLRVHPDLHEAFRFLKERGFTVYATALREDARDFRE T0378 192 :PNFTEPAILVLGSEGRGISPEVAAEITDRLTIP 1v2xA 111 :VDYTKPTAVLFGAEKWGVSEEALALADGAIKIP T0378 230 :VKGHTESLNVAIATAILCSEWRRR 1v2xA 144 :MLGMVQSLNVSVAAAVILFEAQRQ Number of specific fragments extracted= 5 number of extra gaps= 0 total=551 Number of alignments=53 # 1v2xA read from 1v2xA/merged-good-all-a2m # found chain 1v2xA in training set T0378 7 :IKFLR 1v2xA 6 :EARRR T0378 71 :DFKRISTQTTP 1v2xA 11 :RIEEVLRRRQP T0378 100 :GLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFS 1v2xA 22 :DLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPT T0378 146 :ASMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQS 1v2xA 66 :TSGGSHKWVYLRVHPDLHEAFRFLKERGFTVYATALREDA T0378 187 :YEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPA 1v2xA 106 :RDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPM T0378 231 :KGHTESLNVAIATAILCSEWRRR 1v2xA 145 :LGMVQSLNVSVAAAVILFEAQRQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=557 Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1j8yF/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1j8yF expands to /projects/compbio/data/pdb/1j8y.pdb.gz 1j8yF:# T0378 read from 1j8yF/merged-good-all-a2m # 1j8yF read from 1j8yF/merged-good-all-a2m # adding 1j8yF to template set # found chain 1j8yF in template set Warning: unaligning (T0378)D110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1j8yF)T113 Warning: unaligning (T0378)P111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1j8yF)T113 T0378 4 :ANQIKFLRSLRERKYRLRE 1j8yF 22 :DKAVEDFIKELQKSLISAD T0378 28 :EGPKLVGEMLPF 1j8yF 41 :VNVKLVFSLTNK T0378 48 :TAAMLRAVSTPH 1j8yF 53 :IKERLKNEKPPT T0378 72 :FKRISTQT 1j8yF 80 :LSNLFGGD T0378 91 :PAEPEPVVE 1j8yF 88 :KEPKVIPDK T0378 100 :GLTLLLDGVQ 1j8yF 98 :PYVIMLVGVQ T0378 113 :NVGTILRTADWFGIRH 1j8yF 114 :TAGKLAYFYKKKGFKV T0378 130 :WLGT 1j8yF 130 :GLVG T0378 136 :ADVFSPKVVQASMGALAR 1j8yF 134 :ADVYRPAALEQLQQLGQQ T0378 154 :VQPTPLK 1j8yF 154 :VPVYGEP T0378 162 :TVDTLAYFRRQGIPVYGAFLDGQSLYEA 1j8yF 169 :AKRGVEKFLSEKMEIIIVDTAGRHGYGE T0378 193 :NF 1j8yF 212 :KP T0378 196 :EPAILVL 1j8yF 214 :DEVTLVI T0378 204 :SEGRG 1j8yF 221 :DASIG T0378 213 :VAAEI 1j8yF 235 :FNQAS T0378 220 :RLTIPA 1j8yF 243 :TIIITK T0378 230 :VKGHTESLNVAIATA 1j8yF 249 :MDGTAKGGGALSAVA Number of specific fragments extracted= 17 number of extra gaps= 1 total=574 Number of alignments=55 # 1j8yF read from 1j8yF/merged-good-all-a2m # found chain 1j8yF in template set Warning: unaligning (T0378)D110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1j8yF)T113 Warning: unaligning (T0378)P111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1j8yF)T113 T0378 4 :ANQIKFLRSLRERKYRL 1j8yF 22 :DKAVEDFIKELQKSLIS T0378 22 :EQA 1j8yF 39 :ADV T0378 29 :GPKLVGEMLPF 1j8yF 42 :NVKLVFSLTNK T0378 49 :AAMLRAVSTPHDAE 1j8yF 54 :KERLKNEKPPTYIE T0378 72 :FKRISTQTT 1j8yF 80 :LSNLFGGDK T0378 91 :PAEPEPVVEGLTLLLDGVQ 1j8yF 89 :EPKVIPDKIPYVIMLVGVQ T0378 113 :NVGTILRTADWFGIR 1j8yF 114 :TAGKLAYFYKKKGFK T0378 128 :HVWL 1j8yF 130 :GLVG T0378 136 :ADVFSPKVVQASMGALAR 1j8yF 134 :ADVYRPAALEQLQQLGQQ T0378 154 :VQPTPL 1j8yF 154 :VPVYGE T0378 160 :KN 1j8yF 163 :KD T0378 162 :TVDTLAYFRRQGIPVYGAFLDGQ 1j8yF 169 :AKRGVEKFLSEKMEIIIVDTAGR T0378 192 :PNF 1j8yF 192 :HGY T0378 195 :TEPAILVLG 1j8yF 213 :PDEVTLVID T0378 205 :EGRG 1j8yF 222 :ASIG T0378 213 :VAAEI 1j8yF 235 :FNQAS T0378 220 :RLTIPA 1j8yF 243 :TIIITK T0378 230 :VKGHTESLNVAIATA 1j8yF 249 :MDGTAKGGGALSAVA Number of specific fragments extracted= 18 number of extra gaps= 1 total=592 Number of alignments=56 # 1j8yF read from 1j8yF/merged-good-all-a2m # found chain 1j8yF in template set Warning: unaligning (T0378)D110 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1j8yF)T113 Warning: unaligning (T0378)P111 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1j8yF)T113 T0378 3 :SANQIKFLRSLRE 1j8yF 18 :SSSYDKAVEDFIK T0378 31 :KLVGEMLPFYRCRMLVGTAAMLRAVSTPHDAEV 1j8yF 31 :ELQKSLISADVNVKLVFSLTNKIKERLKNEKPP T0378 69 :SFDFKRISTQ 1j8yF 77 :YDELSNLFGG T0378 89 :DLPAEPEPVVEGLTLLLDGVQ 1j8yF 87 :DKEPKVIPDKIPYVIMLVGVQ T0378 114 :VGTILRTADWFGIRHVWLG 1j8yF 115 :AGKLAYFYKKKGFKVGLVG T0378 136 :ADVFSPKVVQASMGALAR 1j8yF 134 :ADVYRPAALEQLQQLGQQ T0378 154 :VQPTPL 1j8yF 154 :VPVYGE T0378 162 :TVDTLAYFRRQGIPVYGAFLDGQS 1j8yF 169 :AKRGVEKFLSEKMEIIIVDTAGRH T0378 193 :NFTE 1j8yF 193 :GYGE T0378 197 :PAILVLGSEGR 1j8yF 215 :EVTLVIDASIG T0378 213 :VAAEI 1j8yF 235 :FNQAS T0378 219 :DRLTIPA 1j8yF 242 :GTIIITK T0378 230 :VKGHTESLNVAIATA 1j8yF 249 :MDGTAKGGGALSAVA Number of specific fragments extracted= 13 number of extra gaps= 1 total=605 Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ipaA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ipaA expands to /projects/compbio/data/pdb/1ipa.pdb.gz 1ipaA:# T0378 read from 1ipaA/merged-good-all-a2m # 1ipaA read from 1ipaA/merged-good-all-a2m # adding 1ipaA to template set # found chain 1ipaA in template set Warning: unaligning (T0378)V55 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ipaA)L74 Warning: unaligning (T0378)A61 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ipaA)L74 T0378 3 :SANQIKFLRSLRERKYRLREQAFAVEGPKLVGEMLPFYR 1ipaA 7 :ANPRIKELARLLERKHRDSQRRFLIEGAREIERALQAGI T0378 42 :CRMLVGTA 1ipaA 47 :LEQALVWE T0378 50 :AMLRA 1ipaA 63 :QVYAA T0378 62 :EVVELPESF 1ipaA 75 :ALLEVSEAV T0378 72 :FKRISTQTTPQPLMAVFDLPAEPEPVVE 1ipaA 84 :LKKLSVRDNPAGLIALARMPERTLEEYR T0378 100 :GLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTG 1ipaA 116 :ALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGG T0378 136 :ADVFSPKVVQASMGALARVQPTP 1ipaA 151 :VDLYSPQVIRNSTGVVFSLRTLA T0378 160 :KNTVDTLAYFRRQGIPVYGAFLDGQSLYEA 1ipaA 174 :ASESEVLDWIKQHNLPLVATTPHAEALYWE T0378 192 :PNFTEPAILVLGSEGRGISPEVAAEITDRLTIP 1ipaA 204 :ANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIP T0378 230 :VKGHTESLNVAIATAILCSEWRR 1ipaA 237 :MQGQADSLNVSVSAALLLYEALR Number of specific fragments extracted= 10 number of extra gaps= 0 total=615 Number of alignments=58 # 1ipaA read from 1ipaA/merged-good-all-a2m # found chain 1ipaA in template set Warning: unaligning (T0378)V55 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ipaA)L74 Warning: unaligning (T0378)A61 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ipaA)L74 T0378 1 :MLSANQIKFLRSLRERKYRLREQAFAVEGPKLVGEMLPF 1ipaA 5 :STANPRIKELARLLERKHRDSQRRFLIEGAREIERALQA T0378 40 :YRCRMLVGT 1ipaA 45 :IELEQALVW T0378 49 :AAMLRA 1ipaA 62 :QQVYAA T0378 62 :EVVELPESF 1ipaA 75 :ALLEVSEAV T0378 72 :FKRISTQTTPQPLMAVFDLPAEPEPVV 1ipaA 84 :LKKLSVRDNPAGLIALARMPERTLEEY T0378 99 :EGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTG 1ipaA 115 :DALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGG T0378 136 :ADVFSPKVVQASMGALARVQPTP 1ipaA 151 :VDLYSPQVIRNSTGVVFSLRTLA T0378 160 :KNTVDTLAYFRRQGIPVYGAFLDGQSLYEA 1ipaA 174 :ASESEVLDWIKQHNLPLVATTPHAEALYWE T0378 192 :PNFTEPAILVLGSEGRGISPEVAAEITDRLTIP 1ipaA 204 :ANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIP T0378 230 :VKGHTESLNVAIATAILCSEWRRR 1ipaA 237 :MQGQADSLNVSVSAALLLYEALRQ Number of specific fragments extracted= 10 number of extra gaps= 0 total=625 Number of alignments=59 # 1ipaA read from 1ipaA/merged-good-all-a2m # found chain 1ipaA in template set Warning: unaligning (T0378)S56 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ipaA)L74 Warning: unaligning (T0378)E62 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ipaA)L74 T0378 3 :SANQIKFLRSLRERKYRLREQAFAVEGPKLVGEMLPFYRCRMLVGTA 1ipaA 7 :ANPRIKELARLLERKHRDSQRRFLIEGAREIERALQAGIELEQALVW T0378 50 :AMLRAV 1ipaA 62 :QQVYAA T0378 63 :VVELPESFDFKRISTQTTPQPLMAVFDLPAEPEPVVE 1ipaA 75 :ALLEVSEAVLKKLSVRDNPAGLIALARMPERTLEEYR T0378 100 :GLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGT 1ipaA 116 :ALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAG T0378 135 :SADVFSPKVVQASMGALARVQPTP 1ipaA 150 :GVDLYSPQVIRNSTGVVFSLRTLA T0378 160 :KNTVDTLAYFRRQGIPVYGAFLDGQS 1ipaA 174 :ASESEVLDWIKQHNLPLVATTPHAEA T0378 188 :EAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPA 1ipaA 200 :LYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPM T0378 231 :KGHTESLNVAIATAILCSEWRRRS 1ipaA 238 :QGQADSLNVSVSAALLLYEALRQR Number of specific fragments extracted= 8 number of extra gaps= 0 total=633 Number of alignments=60 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q9jA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1q9jA expands to /projects/compbio/data/pdb/1q9j.pdb.gz 1q9jA:# T0378 read from 1q9jA/merged-good-all-a2m # 1q9jA read from 1q9jA/merged-good-all-a2m # adding 1q9jA to template set # found chain 1q9jA in template set Warning: unaligning (T0378)V176 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1q9jA)A181 T0378 58 :PHDAEVVELPESF 1q9jA 52 :VLASHLEQSSDGG T0378 84 :LMAVFD 1q9jA 65 :WNLVAD T0378 96 :PVVE 1q9jA 71 :DLLH T0378 100 :GLTLLLDGVQDPGNVGTIL 1q9jA 117 :ELTLYLHHCMADGHHGAVL T0378 140 :SPKVVQASMGALAR 1q9jA 136 :VDELFSRYTDAVTT T0378 155 :QPTPLK 1q9jA 154 :PITPQP T0378 161 :NTVDTLAY 1q9jA 163 :SMEAVLAQ T0378 172 :QGIP 1q9jA 171 :RGIR T0378 209 :ISPEVAAEITDR 1q9jA 218 :LSKQQTSDLMAF T0378 230 :VKGHTESLNVAIATAILCSEWR 1q9jA 230 :GREHRLSLNAVVAAAILLTEWQ Number of specific fragments extracted= 10 number of extra gaps= 0 total=643 Number of alignments=61 # 1q9jA read from 1q9jA/merged-good-all-a2m # found chain 1q9jA in template set Warning: unaligning (T0378)V176 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1q9jA)A181 Warning: unaligning (T0378)D182 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1q9jA)A181 T0378 22 :EQAFAVEGPKLVGEMLPFYRCRMLVGT 1q9jA 3 :PGSVIRKLSHSEEVFAQYEVFTSMTIQ T0378 49 :AAMLR 1q9jA 36 :VDALS T0378 54 :AVSTPHDAEVVELPESF 1q9jA 48 :ETHPVLASHLEQSSDGG T0378 84 :LMAVF 1q9jA 65 :WNLVA T0378 89 :DLPAEPE 1q9jA 71 :DLLHSGI T0378 99 :EGLTLLLDGVQDPGNVGTILR 1q9jA 116 :AELTLYLHHCMADGHHGAVLV T0378 141 :PKVVQASMGALARVQPTPL 1q9jA 137 :DELFSRYTDAVTTGDPGPI T0378 160 :KNTVDTLAY 1q9jA 162 :LSMEAVLAQ T0378 172 :QGIP 1q9jA 171 :RGIR T0378 183 :G 1q9jA 182 :E T0378 209 :ISPEVAAEITDR 1q9jA 218 :LSKQQTSDLMAF T0378 230 :VKGHTESLNVAIATAILCSEWRR 1q9jA 230 :GREHRLSLNAVVAAAILLTEWQL Number of specific fragments extracted= 12 number of extra gaps= 0 total=655 Number of alignments=62 # 1q9jA read from 1q9jA/merged-good-all-a2m # found chain 1q9jA in template set T0378 209 :ISPEVAAEI 1q9jA 218 :LSKQQTSDL T0378 231 :KGHTESLNVAIATAILCSEWRR 1q9jA 231 :REHRLSLNAVVAAAILLTEWQL Number of specific fragments extracted= 2 number of extra gaps= 0 total=657 Number of alignments=63 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1j8mF/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1j8mF expands to /projects/compbio/data/pdb/1j8m.pdb.gz 1j8mF:# T0378 read from 1j8mF/merged-good-all-a2m # 1j8mF read from 1j8mF/merged-good-all-a2m # adding 1j8mF to template set # found chain 1j8mF in template set Warning: unaligning (T0378)N113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1j8mF)T112 Warning: unaligning (T0378)V114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1j8mF)T112 Warning: unaligning (T0378)E216 because of BadResidue code BAD_PEPTIDE in next template residue (1j8mF)S239 Warning: unaligning (T0378)I217 because of BadResidue code BAD_PEPTIDE at template residue (1j8mF)S239 T0378 4 :ANQIKFLRSLRERKYRLRE 1j8mF 22 :DKAVEDFIKELQKSLISAD T0378 28 :EGPKLVGEMLPF 1j8mF 41 :VNVKLVFSLTNK T0378 48 :TAAMLRAVSTPH 1j8mF 53 :IKERLKNEKPPT T0378 72 :FKRISTQT 1j8mF 80 :LSNLFGGD T0378 91 :PAEPEPVVE 1j8mF 88 :KEPKVIPDK T0378 100 :GLTLLLDGVQDPG 1j8mF 98 :PYVIMLVGVQGTG T0378 115 :GTILRTADWF 1j8mF 113 :TTAGKLAYFY T0378 125 :GIR 1j8mF 126 :GFK T0378 128 :HVWLGTGSADVFSPKVVQASMGA 1j8mF 130 :GLVGADVYRPAALEQLQQLGQQI T0378 153 :RVQPTPLKN 1j8mF 153 :GVPVYGEPG T0378 162 :TVDTLAYFRRQGIPVYGAFLDGQSLYEA 1j8mF 169 :AKRGVEKFLSEKMEIIIVDTAGRHGYGE T0378 192 :P 1j8mF 197 :E T0378 193 :NF 1j8mF 212 :KP T0378 196 :EPAILVL 1j8mF 214 :DEVTLVI T0378 204 :SEGRG 1j8mF 221 :DASIG T0378 213 :VAA 1j8mF 235 :FNQ T0378 220 :RLTI 1j8mF 243 :TIII T0378 224 :P 1j8mF 248 :K T0378 230 :VKGHTESLNVAIATA 1j8mF 249 :MDGTAKGGGALSAVA Number of specific fragments extracted= 19 number of extra gaps= 2 total=676 Number of alignments=64 # 1j8mF read from 1j8mF/merged-good-all-a2m # found chain 1j8mF in template set Warning: unaligning (T0378)N113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1j8mF)T112 Warning: unaligning (T0378)V114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1j8mF)T112 Warning: unaligning (T0378)E216 because of BadResidue code BAD_PEPTIDE in next template residue (1j8mF)S239 Warning: unaligning (T0378)I217 because of BadResidue code BAD_PEPTIDE at template residue (1j8mF)S239 T0378 4 :ANQIKFLRSLRERKYRL 1j8mF 22 :DKAVEDFIKELQKSLIS T0378 29 :GPKLVGEMLPF 1j8mF 42 :NVKLVFSLTNK T0378 49 :AAMLRAVSTPHDAE 1j8mF 54 :KERLKNEKPPTYIE T0378 72 :FKRISTQTTP 1j8mF 80 :LSNLFGGDKE T0378 90 :LPA 1j8mF 90 :PKV T0378 95 :EPVVEGLTLLLDGVQDPG 1j8mF 93 :IPDKIPYVIMLVGVQGTG T0378 115 :GTILRTADWF 1j8mF 113 :TTAGKLAYFY T0378 125 :GIR 1j8mF 126 :GFK T0378 128 :HVWLGTGSADVFSPKVVQASMGA 1j8mF 130 :GLVGADVYRPAALEQLQQLGQQI T0378 154 :VQPTPL 1j8mF 154 :VPVYGE T0378 162 :TVDTLAYFRRQGIPVYGAFLDGQ 1j8mF 169 :AKRGVEKFLSEKMEIIIVDTAGR T0378 192 :PNF 1j8mF 192 :HGY T0378 195 :TEPAILVLGS 1j8mF 213 :PDEVTLVIDA T0378 206 :GRG 1j8mF 223 :SIG T0378 213 :VAA 1j8mF 235 :FNQ T0378 219 :DRLTIP 1j8mF 243 :TIIITK T0378 230 :VKGHTESLNVAIATA 1j8mF 249 :MDGTAKGGGALSAVA Number of specific fragments extracted= 17 number of extra gaps= 2 total=693 Number of alignments=65 # 1j8mF read from 1j8mF/merged-good-all-a2m # found chain 1j8mF in template set Warning: unaligning (T0378)N113 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1j8mF)T112 Warning: unaligning (T0378)V114 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1j8mF)T112 Warning: unaligning (T0378)E216 because of BadResidue code BAD_PEPTIDE in next template residue (1j8mF)S239 Warning: unaligning (T0378)I217 because of BadResidue code BAD_PEPTIDE at template residue (1j8mF)S239 T0378 3 :SANQIKFLRSL 1j8mF 21 :YDKAVEDFIKE T0378 32 :LVGEMLPFYRCRMLVGTAAMLRAVSTPHDAEV 1j8mF 32 :LQKSLISADVNVKLVFSLTNKIKERLKNEKPP T0378 69 :SFDFKRISTQ 1j8mF 77 :YDELSNLFGG T0378 89 :DLPAEPEPVVEGLTLLLDGVQDPG 1j8mF 87 :DKEPKVIPDKIPYVIMLVGVQGTG T0378 115 :GTILRTADWF 1j8mF 113 :TTAGKLAYFY T0378 125 :GIR 1j8mF 126 :GFK T0378 128 :HVWLGTGSADVFSPKVVQASMG 1j8mF 130 :GLVGADVYRPAALEQLQQLGQQ T0378 154 :VQPTPL 1j8mF 154 :VPVYGE T0378 162 :TVDTLAYFRRQGIPVYGAFLDGQS 1j8mF 169 :AKRGVEKFLSEKMEIIIVDTAGRH T0378 193 :NFTE 1j8mF 193 :GYGE T0378 197 :PAILVLGSEGR 1j8mF 215 :EVTLVIDASIG T0378 213 :VAA 1j8mF 235 :FNQ T0378 220 :RLTIPA 1j8mF 243 :TIIITK T0378 230 :VKGHTESLNVAIATA 1j8mF 249 :MDGTAKGGGALSAVA Number of specific fragments extracted= 14 number of extra gaps= 2 total=707 Number of alignments=66 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zjrA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zjrA expands to /projects/compbio/data/pdb/1zjr.pdb.gz 1zjrA:# T0378 read from 1zjrA/merged-good-all-a2m # 1zjrA read from 1zjrA/merged-good-all-a2m # adding 1zjrA to template set # found chain 1zjrA in template set Warning: unaligning (T0378)A4 because first residue in template chain is (1zjrA)L6 T0378 5 :NQIKFLRSLRER 1zjrA 7 :VLEKRLKRLREV T0378 72 :FKR 1zjrA 19 :LEK T0378 97 :VVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGS 1zjrA 22 :RQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAE T0378 136 :ADVFSP 1zjrA 63 :KAKINE T0378 145 :QASMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAP 1zjrA 69 :GITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFRE T0378 192 :PNFTEPAILVLGSEGRGISPEVAAEITDRLTIP 1zjrA 115 :VDYTKPTVLVVGNELQGVSPEIVEIADKKIVIP T0378 230 :VKGHTESLNVAIATAILCSEWRR 1zjrA 148 :MYGMAQSLNVSVATGIILYEAQR Number of specific fragments extracted= 7 number of extra gaps= 0 total=714 Number of alignments=67 # 1zjrA read from 1zjrA/merged-good-all-a2m # found chain 1zjrA in template set T0378 5 :NQIKFLRSLRER 1zjrA 7 :VLEKRLKRLREV T0378 37 :LPF 1zjrA 19 :LEK T0378 97 :VVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTG 1zjrA 22 :RQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHA T0378 135 :SADVFSPK 1zjrA 62 :KKAKINEG T0378 146 :ASMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAP 1zjrA 70 :ITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFRE T0378 192 :PNFTEPAILVLGSEGRGISPEVAAEITDRLTIP 1zjrA 115 :VDYTKPTVLVVGNELQGVSPEIVEIADKKIVIP T0378 230 :VKGHTESLNVAIATAILCSEWRRR 1zjrA 148 :MYGMAQSLNVSVATGIILYEAQRQ Number of specific fragments extracted= 7 number of extra gaps= 0 total=721 Number of alignments=68 # 1zjrA read from 1zjrA/merged-good-all-a2m # found chain 1zjrA in template set Warning: unaligning (T0378)A4 because first residue in template chain is (1zjrA)L6 T0378 5 :NQIKFLRSLRER 1zjrA 7 :VLEKRLKRLREV T0378 76 :ST 1zjrA 19 :LE T0378 98 :V 1zjrA 21 :K T0378 100 :GLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGT 1zjrA 25 :DLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYH T0378 134 :GSADVFSPK 1zjrA 62 :KKAKINEGI T0378 147 :SMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQS 1zjrA 71 :TQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKES T0378 187 :YEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPA 1zjrA 110 :VNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPM T0378 231 :KGHTESLNVAIATAILCSEWRRR 1zjrA 149 :YGMAQSLNVSVATGIILYEAQRQ Number of specific fragments extracted= 8 number of extra gaps= 0 total=729 Number of alignments=69 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wlsA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wlsA expands to /projects/compbio/data/pdb/1wls.pdb.gz 1wlsA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0378 read from 1wlsA/merged-good-all-a2m # 1wlsA read from 1wlsA/merged-good-all-a2m # adding 1wlsA to template set # found chain 1wlsA in template set T0378 30 :PKLVGEMLPFYR 1wlsA 61 :ERLAKEIEKEVW T0378 42 :CRMLVGT 1wlsA 74 :YDGIVIT T0378 97 :VVE 1wlsA 82 :GTD T0378 100 :GLTLLLDGVQDP 1wlsA 101 :PIPIVLTGSMLP T0378 112 :GNVGTILRTAD 1wlsA 122 :FNLRTALEFVK T0378 124 :FGIRHVWLGTGS 1wlsA 133 :LGIRGIYIAFNG T0378 136 :ADVFSPK 1wlsA 185 :PDFYGDE T0378 148 :MGALARVQPTPL 1wlsA 196 :IKYEPKVLVIKL T0378 160 :KNTVDTLAYF 1wlsA 211 :LSGDIVREAL T0378 171 :RQGIPVYGAFLDGQS 1wlsA 221 :RLGYKGIILEGYGVG T0378 186 :LYEAPLP 1wlsA 237 :IPYRGTD T0378 195 :TEPAILVLGSEGRGIS 1wlsA 254 :RIPVVLTTQAIYDGVD Number of specific fragments extracted= 12 number of extra gaps= 0 total=741 Number of alignments=70 # 1wlsA read from 1wlsA/merged-good-all-a2m # found chain 1wlsA in template set T0378 31 :KLVGEMLPFYRCRMLVGTAAMLR 1wlsA 65 :KEIEKEVWEYDGIVITHGTDTMA T0378 78 :Q 1wlsA 99 :N T0378 99 :EGLTLLLDGVQDP 1wlsA 100 :PPIPIVLTGSMLP T0378 112 :GNVGTILRTADWF 1wlsA 118 :SDAPFNLRTALEF T0378 125 :GIRHVWLGTG 1wlsA 134 :GIRGIYIAFN T0378 135 :SADVFSPK 1wlsA 184 :IPDFYGDE T0378 150 :ALARVQPTPL 1wlsA 198 :YEPKVLVIKL T0378 160 :KNTVDTLAYF 1wlsA 211 :LSGDIVREAL T0378 171 :RQGIPVYGAFLDG 1wlsA 221 :RLGYKGIILEGYG T0378 184 :QSLYEAP 1wlsA 235 :GGIPYRG T0378 192 :PNF 1wlsA 242 :TDL T0378 195 :TEPAILVLGSEGRGIS 1wlsA 254 :RIPVVLTTQAIYDGVD T0378 212 :EVAAEITDR 1wlsA 274 :KVGRIALEA T0378 223 :IP 1wlsA 285 :IP T0378 230 :VKGHTE 1wlsA 287 :AGDMTK T0378 241 :IATAILCSEW 1wlsA 293 :EATITKLMWI Number of specific fragments extracted= 16 number of extra gaps= 0 total=757 Number of alignments=71 # 1wlsA read from 1wlsA/merged-good-all-a2m # found chain 1wlsA in template set T0378 72 :FKRIS 1wlsA 67 :IEKEV T0378 97 :VVEGLTLLLDGVQDPGNVGTILRTA 1wlsA 72 :WEYDGIVITHGTDTMAYSASMLSFM T0378 128 :HVWLGTGSADVFS 1wlsA 103 :PIVLTGSMLPITE T0378 141 :PKVVQASM 1wlsA 121 :PFNLRTAL T0378 168 :YFRRQGIPVYGAFLDGQS 1wlsA 129 :EFVKLGIRGIYIAFNGKV T0378 186 :LYEAPLPNFTE 1wlsA 152 :ASKIRSMGFDA T0378 197 :PAILVLGSEGRGIS 1wlsA 225 :KGIILEGYGVGGIP T0378 213 :VAAEI 1wlsA 244 :LFEVV Number of specific fragments extracted= 8 number of extra gaps= 0 total=765 Number of alignments=72 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vhyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vhyA expands to /projects/compbio/data/pdb/1vhy.pdb.gz 1vhyA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 679, because occupancy 0.350 <= existing 0.650 in 1vhyA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 681, because occupancy 0.350 <= existing 0.650 in 1vhyA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 683, because occupancy 0.350 <= existing 0.650 in 1vhyA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 685, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 778, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 780, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 782, because occupancy 0.350 <= existing 0.650 in 1vhyA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1831, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 1833, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 1835, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 1837, because occupancy 0.350 <= existing 0.650 in 1vhyA Skipped atom 1839, because occupancy 0.350 <= existing 0.650 in 1vhyA # T0378 read from 1vhyA/merged-good-all-a2m # 1vhyA read from 1vhyA/merged-good-all-a2m # adding 1vhyA to template set # found chain 1vhyA in template set Warning: unaligning (T0378)G107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vhyA)R91 Warning: unaligning (T0378)G112 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vhyA)R91 T0378 56 :STP 1vhyA 10 :ISL T0378 60 :DAEVVELPESF 1vhyA 14 :NQTQCYLSEDA T0378 72 :FKRISTQTT 1vhyA 25 :ANHVARVLR T0378 81 :PQPLMA 1vhyA 37 :GEQLEL T0378 100 :GLTLLLD 1vhyA 79 :KIHLGQV T0378 113 :NVGTILRTAD 1vhyA 92 :MEFTIQKSVE T0378 124 :FGIRHVWLGT 1vhyA 102 :LGVNVITPLW T0378 134 :GSADVFSPK 1vhyA 114 :RCGVKLDAE T0378 143 :VVQASMGALA 1vhyA 131 :WQKIAIAACE T0378 153 :RVQPTPLKNTVDTL 1vhyA 147 :VPEIRPLMKLQDWC T0378 173 :GIPVYGAFLDGQSLYEA 1vhyA 165 :GALKLNLHPRAHYSIKT T0378 191 :LPNF 1vhyA 182 :LPTI T0378 195 :TEPAILVLGSEG 1vhyA 187 :AGGVRLLIGSEG T0378 208 :GISPEVAAEITDR 1vhyA 199 :GLSAQEIAQTEQQ T0378 221 :LTIPASGLSVKGH 1vhyA 214 :TEILLGKRVLRTE T0378 238 :NVAIATAILCSE 1vhyA 227 :TASLAAISALQI Number of specific fragments extracted= 16 number of extra gaps= 0 total=781 Number of alignments=73 # 1vhyA read from 1vhyA/merged-good-all-a2m # found chain 1vhyA in template set Warning: unaligning (T0378)G107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vhyA)R91 Warning: unaligning (T0378)G112 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vhyA)R91 T0378 23 :QAFAVE 1vhyA 14 :NQTQCY T0378 47 :GTAAMLR 1vhyA 20 :LSEDAAN T0378 54 :AVSTPHDAEVVELPESFD 1vhyA 31 :VLRMTEGEQLELFDGSNH T0378 79 :TTPQPLMAVF 1vhyA 57 :SNKKSVKVEI T0378 89 :DLPAEPEPVVEGLTLLLD 1vhyA 68 :GRELADKESHLKIHLGQV T0378 113 :NVG 1vhyA 92 :MEF T0378 117 :ILRTADWFGIRHV 1vhyA 95 :TIQKSVELGVNVI T0378 130 :WLGTGSADVFSPK 1vhyA 110 :LWSERCGVKLDAE T0378 143 :VVQASMGALAR 1vhyA 131 :WQKIAIAACEQ T0378 154 :VQPTPLKNTVDTL 1vhyA 148 :PEIRPLMKLQDWC T0378 173 :GIPVYGAFLDGQ 1vhyA 165 :GALKLNLHPRAH T0378 186 :LYEAPLPNF 1vhyA 177 :YSIKTLPTI T0378 195 :TEPAILVLGSEG 1vhyA 187 :AGGVRLLIGSEG T0378 208 :GISPEVAAEITDR 1vhyA 199 :GLSAQEIAQTEQQ T0378 221 :LTIPASGLSVKGHTESLNVAIATAIL 1vhyA 214 :TEILLGKRVLRTETASLAAISALQIC Number of specific fragments extracted= 15 number of extra gaps= 0 total=796 Number of alignments=74 # 1vhyA read from 1vhyA/merged-good-all-a2m # found chain 1vhyA in template set Warning: unaligning (T0378)G107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vhyA)R91 Warning: unaligning (T0378)G112 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vhyA)R91 T0378 83 :PLMAVFDLPAEPEPVVE 1vhyA 61 :SVKVEILGRELADKESH T0378 100 :GLTLLLD 1vhyA 79 :KIHLGQV T0378 113 :NVGTILRTA 1vhyA 92 :MEFTIQKSV T0378 123 :WFGIRHVWLGT 1vhyA 101 :ELGVNVITPLW T0378 134 :GSADVFS 1vhyA 114 :RCGVKLD T0378 141 :PKVVQAS 1vhyA 133 :KIAIAAC T0378 148 :MGALARVQPTPLKNTVDTLA 1vhyA 142 :CGRNIVPEIRPLMKLQDWCA T0378 173 :GIPVYGAFLDGQS 1vhyA 165 :GALKLNLHPRAHY T0378 188 :EAPLPN 1vhyA 178 :SIKTLP T0378 194 :FTEPAILVLGSEG 1vhyA 186 :PAGGVRLLIGSEG T0378 208 :GISPEVAAEI 1vhyA 199 :GLSAQEIAQT T0378 218 :TDRLTIPASGLSVKGHTESLNVAIATAI 1vhyA 211 :QGFTEILLGKRVLRTETASLAAISALQI Number of specific fragments extracted= 12 number of extra gaps= 0 total=808 Number of alignments=75 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sdsA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0378 read from 1sdsA/merged-good-all-a2m # 1sdsA read from 1sdsA/merged-good-all-a2m # found chain 1sdsA in training set T0378 1 :MLSANQIKFLRSL 1sdsA 8 :KVPEEIQKELLDA T0378 24 :AFAVEGPKLVGEMLPFYRCRMLVGTAAM 1sdsA 25 :QKIKKGANEVTKAVERGIAKLVIIAEDV T0378 54 :A 1sdsA 53 :K T0378 56 :STPH 1sdsA 54 :PEEV T0378 60 :DAEVVELPESFDFKRISTQTTPQPLMAVFDLP 1sdsA 69 :GIPYAYVASKQDLGKAAGLEVAASSVAIINEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=813 Number of alignments=76 # 1sdsA read from 1sdsA/merged-good-all-a2m # found chain 1sdsA in training set T0378 1 :MLSANQIKFLRSLRER 1sdsA 8 :KVPEEIQKELLDAVAK T0378 24 :AFAVEGPKLVGEMLPFYRCRMLVGTAAMLR 1sdsA 25 :QKIKKGANEVTKAVERGIAKLVIIAEDVKP T0378 54 :AVSTPHDAEVVELPESFDFKRISTQTTPQPLMAVFDLPA 1sdsA 63 :YLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGD Number of specific fragments extracted= 3 number of extra gaps= 0 total=816 Number of alignments=77 # 1sdsA read from 1sdsA/merged-good-all-a2m # found chain 1sdsA in training set T0378 1 :MLSANQIKFLRSL 1sdsA 8 :KVPEEIQKELLDA T0378 24 :AFAVEGPKLVGEMLPFYRCRMLVGTA 1sdsA 25 :QKIKKGANEVTKAVERGIAKLVIIAE T0378 50 :AMLRAVSTPHDAEVVELP 1sdsA 58 :VAHLPYLCEEKGIPYAYV T0378 68 :ESFDFKRISTQTTPQPLMAVFDLPA 1sdsA 77 :SKQDLGKAAGLEVAASSVAIINEGD Number of specific fragments extracted= 4 number of extra gaps= 0 total=820 Number of alignments=78 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1o6dA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0378 read from 1o6dA/merged-good-all-a2m # 1o6dA read from 1o6dA/merged-good-all-a2m # found chain 1o6dA in training set T0378 1 :MLSANQIKFLRSLR 1o6dA 10 :KLDGFIKEGIKHYE T0378 53 :RAVSTPHDAEVVELPESF 1o6dA 24 :KFLRRFCKPEVLEIKRVH T0378 94 :PEP 1o6dA 42 :RGS T0378 140 :SPKV 1o6dA 45 :IEEI T0378 162 :TVDTLAYFRRQ 1o6dA 49 :VRKETEDLTNR T0378 173 :GIPVYGAFLDGQSLYEAP 1o6dA 63 :GSFVMVMDKRGEEVSSEE T0378 195 :TEPAILVLGS 1o6dA 92 :GKDITILIGG T0378 206 :GRGISPEVAAEITDRLTIP 1o6dA 102 :PYGLNEEIFAKAHRVFSLS T0378 230 :VKGHT 1o6dA 121 :KMTFT T0378 239 :VAIATAILCSEWRR 1o6dA 126 :HGMTVLIVLEQIFR Number of specific fragments extracted= 10 number of extra gaps= 0 total=830 Number of alignments=79 # 1o6dA read from 1o6dA/merged-good-all-a2m # found chain 1o6dA in training set T0378 128 :HVWLGT 1o6dA 4 :RIAVIG T0378 138 :VFSPKVVQASMGALAR 1o6dA 10 :KLDGFIKEGIKHYEKF T0378 154 :VQPTPLKN 1o6dA 32 :PEVLEIKR T0378 162 :TVDTLAYFRRQ 1o6dA 49 :VRKETEDLTNR T0378 173 :GIPVYGAFLDGQSLYEAP 1o6dA 63 :GSFVMVMDKRGEEVSSEE T0378 195 :TEPAILVLGS 1o6dA 92 :GKDITILIGG T0378 206 :GRGISPEVAAEITDRLTIP 1o6dA 102 :PYGLNEEIFAKAHRVFSLS T0378 230 :VKGHT 1o6dA 121 :KMTFT T0378 239 :VAIATAILCSEWRR 1o6dA 126 :HGMTVLIVLEQIFR Number of specific fragments extracted= 9 number of extra gaps= 0 total=839 Number of alignments=80 # 1o6dA read from 1o6dA/merged-good-all-a2m # found chain 1o6dA in training set T0378 1 :MLSANQIKFLRSLRER 1o6dA 10 :KLDGFIKEGIKHYEKF T0378 37 :LPFYRCRMLVGTA 1o6dA 26 :LRRFCKPEVLEIK T0378 50 :AMLRAVST 1o6dA 45 :IEEIVRKE T0378 72 :FKRISTQTTPQ 1o6dA 53 :TEDLTNRILPG T0378 100 :GLTLLLDG 1o6dA 64 :SFVMVMDK T0378 155 :QPTP 1o6dA 72 :RGEE T0378 160 :KNTVDTLAYFRRQ 1o6dA 76 :VSSEEFADFLKDL T0378 195 :TEPAILVLGS 1o6dA 92 :GKDITILIGG T0378 206 :GRGISPEVAAEITDRLTIPA 1o6dA 102 :PYGLNEEIFAKAHRVFSLSK T0378 231 :KGHTE 1o6dA 122 :MTFTH T0378 240 :AIATAILCSEWRR 1o6dA 127 :GMTVLIVLEQIFR Number of specific fragments extracted= 11 number of extra gaps= 0 total=850 Number of alignments=81 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0378//projects/compbio/experiments/protein-predict/casp7/T0378/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0378//projects/compbio/experiments/protein-predict/casp7/T0378/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0378/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0378/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)V201.CB) [> 4.1707 = 6.9512 < 9.0366] w=1.0000 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)L200.CB) [> 3.9058 = 6.5096 < 8.4625] w=0.9824 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)W130.CB) [> 3.0330 = 5.0550 < 6.5715] w=0.9629 to align # Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)A198.CB) [> 3.6168 = 6.0281 < 7.8365] w=0.9470 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)G132.CA) [> 3.6581 = 6.0968 < 7.9259] w=0.9457 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)W130.CB) [> 4.0484 = 6.7474 < 8.7716] w=0.9433 to align # Constraint # added constraint: constraint((T0378)L118.CB, (T0378)V129.CB) [> 3.7530 = 6.2550 < 8.1315] w=0.9307 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)V129.CB) [> 3.0591 = 5.0984 < 6.6279] w=0.9265 to align # Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)I199.CB) [> 4.1526 = 6.9210 < 8.9973] w=0.9263 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)I126.CB) [> 3.1602 = 5.2669 < 6.8470] w=0.9255 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)I126.CB) [> 4.0650 = 6.7750 < 8.8076] w=0.9211 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)H128.CB) [> 3.0430 = 5.0717 < 6.5933] w=0.9192 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)R127.CB) [> 3.6532 = 6.0886 < 7.9152] w=0.9170 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)R127.CB) [> 3.6522 = 6.0870 < 7.9131] w=0.9161 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)I126.CB) [> 3.0949 = 5.1582 < 6.7057] w=0.9028 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)G132.CA) [> 3.5800 = 5.9666 < 7.7565] w=0.8993 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)V129.CB) [> 4.3703 = 7.2839 < 9.4690] w=0.8865 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)V201.CB) [> 2.9718 = 4.9530 < 6.4389] w=0.8761 to align # Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)L200.CB) [> 3.3135 = 5.5224 < 7.1792] w=0.8620 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)I199.CB) [> 3.7283 = 6.2139 < 8.0780] w=0.8510 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)W130.CB) [> 4.1116 = 6.8526 < 8.9084] w=0.8475 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)T157.CB) [> 3.3241 = 5.5402 < 7.2023] w=0.8436 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)L202.CB) [> 3.4592 = 5.7653 < 7.4948] w=0.8417 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)V129.CB) [> 3.9092 = 6.5154 < 8.4700] w=0.8414 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)I117.CB) [> 3.6786 = 6.1311 < 7.9704] w=0.8230 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)H128.CB) [> 4.2542 = 7.0904 < 9.2175] w=0.8165 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)W130.CB) [> 3.9759 = 6.6265 < 8.6145] w=0.8060 to align # Constraint # added constraint: constraint((T0378)G100.CA, (T0378)R127.CB) [> 3.1104 = 5.1841 < 6.7393] w=0.8030 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)G125.CA) [> 3.9551 = 6.5918 < 8.5693] w=0.7995 to align # Constraint # added constraint: constraint((T0378)I117.CB, (T0378)V129.CB) [> 4.0741 = 6.7901 < 8.8272] w=0.7987 to align # Constraint # added constraint: constraint((T0378)V129.CB, (T0378)Q155.CB) [> 4.2253 = 7.0422 < 9.1548] w=0.7891 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)T157.CB) [> 4.2797 = 7.1328 < 9.2726] w=0.7888 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)P156.CB) [> 3.8468 = 6.4113 < 8.3347] w=0.7867 to align # Constraint # added constraint: constraint((T0378)P175.CB, (T0378)A198.CB) [> 3.3110 = 5.5183 < 7.1738] w=0.7841 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)A121.CB) [> 3.3496 = 5.5826 < 7.2574] w=0.7841 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)P156.CB) [> 4.5610 = 7.6017 < 9.8822] w=0.7816 to align # Constraint # added constraint: constraint((T0378)V176.CB, (T0378)I199.CB) [> 3.0591 = 5.0986 < 6.6282] w=0.7815 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)L131.CB) [> 3.2187 = 5.3645 < 6.9738] w=0.7814 to align # Constraint # added constraint: constraint((T0378)V129.CB, (T0378)T157.CB) [> 4.2165 = 7.0274 < 9.1357] w=0.7792 to align # Constraint # added constraint: constraint((T0378)H128.CB, (T0378)Q155.CB) [> 3.2185 = 5.3642 < 6.9734] w=0.7734 to align # Constraint # added constraint: constraint((T0378)V129.CB, (T0378)V154.CB) [> 3.5081 = 5.8469 < 7.6009] w=0.7682 to align # Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)V201.CB) [> 4.0805 = 6.8009 < 8.8412] w=0.7612 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)L200.CB) [> 4.0857 = 6.8095 < 8.8523] w=0.7602 to align # Constraint # added constraint: constraint((T0378)V129.CB, (T0378)P156.CB) [> 2.9252 = 4.8753 < 6.3379] w=0.7589 to align # Constraint # added constraint: constraint((T0378)P175.CB, (T0378)P197.CB) [> 4.0024 = 6.6706 < 8.6718] w=0.7578 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)L200.CB) [> 3.7748 = 6.2914 < 8.1788] w=0.7540 to align # Constraint # added constraint: constraint((T0378)L202.CB, (T0378)V239.CB) [> 3.6057 = 6.0095 < 7.8124] w=0.7484 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)G132.CA) [> 4.1234 = 6.8724 < 8.9341] w=0.7438 to align # Constraint # added constraint: constraint((T0378)V201.CB, (T0378)I217.CB) [> 4.1061 = 6.8435 < 8.8966] w=0.7397 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)L131.CB) [> 4.0684 = 6.7807 < 8.8148] w=0.7397 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)A198.CB) [> 3.3876 = 5.6459 < 7.3397] w=0.7197 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)A198.CB) [> 4.2332 = 7.0553 < 9.1719] w=0.7197 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)I199.CB) [> 2.8061 = 4.6768 < 6.0799] w=0.7197 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)V201.CB) [> 2.7664 = 4.6107 < 5.9939] w=0.7197 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)P158.CB) [> 3.4927 = 5.8211 < 7.5674] w=0.7173 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)L200.CB) [> 4.2564 = 7.0939 < 9.2221] w=0.7142 to align # Constraint # added constraint: constraint((T0378)G115.CA, (T0378)A146.CB) [> 3.4196 = 5.6993 < 7.4091] w=0.7080 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)L202.CB) [> 3.9858 = 6.6430 < 8.6359] w=0.7079 to align # Constraint # added constraint: constraint((T0378)G132.CA, (T0378)T162.CB) [> 3.8118 = 6.3530 < 8.2588] w=0.7078 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)L200.CB) [> 3.1736 = 5.2893 < 6.8761] w=0.6991 to align # Constraint # added constraint: constraint((T0378)H128.CB, (T0378)V154.CB) [> 3.9242 = 6.5403 < 8.5023] w=0.6980 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)L202.CB) [> 4.4977 = 7.4962 < 9.7451] w=0.6970 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)L131.CB) [> 3.9963 = 6.6604 < 8.6586] w=0.6961 to align # Constraint # added constraint: constraint((T0378)D122.CB, (T0378)V154.CB) [> 3.3180 = 5.5300 < 7.1890] w=0.6939 to align # Constraint # added constraint: constraint((T0378)H128.CB, (T0378)T157.CB) [> 4.0499 = 6.7499 < 8.7748] w=0.6885 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)L202.CB) [> 4.1969 = 6.9948 < 9.0932] w=0.6873 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)L202.CB) [> 4.1943 = 6.9905 < 9.0877] w=0.6873 to align # Constraint # added constraint: constraint((T0378)P175.CB, (T0378)I199.CB) [> 4.2132 = 7.0220 < 9.1287] w=0.6870 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)V129.CB) [> 4.4466 = 7.4109 < 9.6342] w=0.6861 to align # Constraint # added constraint: constraint((T0378)G132.CA, (T0378)P158.CB) [> 3.9609 = 6.6016 < 8.5820] w=0.6857 to align # Constraint # added constraint: constraint((T0378)L118.CB, (T0378)S147.CB) [> 3.4294 = 5.7157 < 7.4304] w=0.6830 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)I117.CB) [> 4.3570 = 7.2618 < 9.4403] w=0.6826 to align # Constraint # added constraint: constraint((T0378)V176.CB, (T0378)V201.CB) [> 3.9611 = 6.6019 < 8.5825] w=0.6818 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)T133.CB) [> 3.4111 = 5.6852 < 7.3907] w=0.6813 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)L202.CB) [> 3.2888 = 5.4813 < 7.1257] w=0.6780 to align # Constraint # added constraint: constraint((T0378)L202.CB, (T0378)T243.CB) [> 3.5827 = 5.9712 < 7.7625] w=0.6773 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)L221.CB) [> 3.8051 = 6.3419 < 8.2444] w=0.6682 to align # Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)L221.CB) [> 3.4335 = 5.7225 < 7.4392] w=0.6682 to align # Constraint # added constraint: constraint((T0378)G132.CA, (T0378)K160.CB) [> 4.1427 = 6.9044 < 8.9757] w=0.6624 to align # Constraint # added constraint: constraint((T0378)G100.CA, (T0378)P197.CB) [> 2.8572 = 4.7620 < 6.1905] w=0.6571 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)G132.CA) [> 4.1780 = 6.9634 < 9.0524] w=0.6565 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)I199.CB) [> 4.2551 = 7.0918 < 9.2193] w=0.6559 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)P197.CB) [> 4.2993 = 7.1655 < 9.3152] w=0.6549 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)G203.CA) [> 2.6031 = 4.3385 < 5.6401] w=0.6456 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)S204.CB) [> 3.5784 = 5.9641 < 7.7533] w=0.6436 to align # Constraint # added constraint: constraint((T0378)L118.CB, (T0378)P156.CB) [> 3.9641 = 6.6069 < 8.5889] w=0.6422 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)G203.CA) [> 4.1718 = 6.9530 < 9.0389] w=0.6366 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)L159.CB) [> 3.8406 = 6.4010 < 8.3214] w=0.6350 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)I217.CB) [> 3.3831 = 5.6385 < 7.3301] w=0.6271 to align # Constraint # added constraint: constraint((T0378)D122.CB, (T0378)A150.CB) [> 3.0015 = 5.0025 < 6.5033] w=0.6221 to align # Constraint # added constraint: constraint((T0378)V108.CB, (T0378)I117.CB) [> 3.8809 = 6.4681 < 8.4085] w=0.6182 to align # Constraint # added constraint: constraint((T0378)V108.CB, (T0378)L131.CB) [> 3.4991 = 5.8318 < 7.5813] w=0.6172 to align # Constraint # added constraint: constraint((T0378)A121.CB, (T0378)V154.CB) [> 3.4308 = 5.7180 < 7.4334] w=0.6077 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)I223.CB) [> 4.1087 = 6.8478 < 8.9021] w=0.6057 to align # Constraint # added constraint: constraint((T0378)L200.CB, (T0378)T243.CB) [> 4.4085 = 7.3474 < 9.5517] w=0.6020 to align # Constraint # added constraint: constraint((T0378)T120.CB, (T0378)A240.CB) [> 3.9511 = 6.5852 < 8.5608] w=0.6020 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)T165.CB) [> 3.3887 = 5.6479 < 7.3422] w=0.6016 to align # Constraint # added constraint: constraint((T0378)V114.CB, (T0378)L131.CB) [> 4.2173 = 7.0289 < 9.1375] w=0.5997 to align # Constraint # added constraint: constraint((T0378)L166.CB, (T0378)V176.CB) [> 3.5878 = 5.9797 < 7.7736] w=0.5996 to align # Constraint # added constraint: constraint((T0378)G100.CA, (T0378)A198.CB) [> 4.0376 = 6.7293 < 8.7480] w=0.5949 to align # Constraint # added constraint: constraint((T0378)V176.CB, (T0378)A198.CB) [> 4.4899 = 7.4831 < 9.7281] w=0.5939 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)L131.CB) [> 4.1492 = 6.9153 < 8.9899] w=0.5905 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)T222.CB) [> 4.2826 = 7.1377 < 9.2791] w=0.5849 to align # Constraint # added constraint: constraint((T0378)L118.CB, (T0378)A150.CB) [> 3.2636 = 5.4393 < 7.0711] w=0.5837 to align # Constraint # added constraint: constraint((T0378)G203.CA, (T0378)V239.CB) [> 3.9633 = 6.6054 < 8.5871] w=0.5832 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)V201.CB) [> 3.8840 = 6.4734 < 8.4154] w=0.5830 to align # Constraint # added constraint: constraint((T0378)G132.CA, (T0378)L159.CB) [> 3.1826 = 5.3043 < 6.8956] w=0.5808 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)G203.CA) [> 4.1840 = 6.9734 < 9.0654] w=0.5782 to align # Constraint # added constraint: constraint((T0378)V176.CB, (T0378)I217.CB) [> 3.5177 = 5.8628 < 7.6217] w=0.5646 to align # Constraint # added constraint: constraint((T0378)D182.CB, (T0378)T222.CB) [> 4.2491 = 7.0819 < 9.2064] w=0.5642 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)T222.CB) [> 3.3621 = 5.6035 < 7.2845] w=0.5642 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)V114.CB) [> 4.0171 = 6.6952 < 8.7038] w=0.5630 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)L200.CB) [> 4.1793 = 6.9655 < 9.0552] w=0.5622 to align # Constraint # added constraint: constraint((T0378)P175.CB, (T0378)E196.CB) [> 3.6993 = 6.1654 < 8.0151] w=0.5560 to align # Constraint # added constraint: constraint((T0378)L118.CB, (T0378)V143.CB) [> 3.9855 = 6.6425 < 8.6353] w=0.5485 to align # Constraint # added constraint: constraint((T0378)G183.CA, (T0378)T222.CB) [> 2.9662 = 4.9437 < 6.4268] w=0.5439 to align # Constraint # added constraint: constraint((T0378)S204.CB, (T0378)V239.CB) [> 4.0506 = 6.7510 < 8.7764] w=0.5428 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)S204.CB) [> 3.1694 = 5.2823 < 6.8670] w=0.5412 to align # Constraint # added constraint: constraint((T0378)I174.CB, (T0378)A198.CB) [> 3.9155 = 6.5259 < 8.4837] w=0.5412 to align # Constraint # added constraint: constraint((T0378)I126.CB, (T0378)V154.CB) [> 3.7273 = 6.2122 < 8.0759] w=0.5405 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)T162.CB) [> 3.7496 = 6.2493 < 8.1241] w=0.5387 to align # Constraint # added constraint: constraint((T0378)V114.CB, (T0378)V143.CB) [> 3.4548 = 5.7580 < 7.4855] w=0.5383 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)T133.CB) [> 4.0512 = 6.7520 < 8.7776] w=0.5350 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)I174.CB) [> 4.0058 = 6.6762 < 8.6791] w=0.5296 to align # Constraint # added constraint: constraint((T0378)Q109.CB, (T0378)S135.CB) [> 3.8669 = 6.4449 < 8.3784] w=0.5250 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)I209.CB) [> 3.7434 = 6.2390 < 8.1108] w=0.5231 to align # Constraint # added constraint: constraint((T0378)T162.CB, (T0378)V213.CB) [> 3.7183 = 6.1971 < 8.0563] w=0.5203 to align # Constraint # added constraint: constraint((T0378)V108.CB, (T0378)S204.CB) [> 3.7024 = 6.1706 < 8.0218] w=0.5201 to align # Constraint # added constraint: constraint((T0378)T120.CB, (T0378)A244.CB) [> 2.8535 = 4.7559 < 6.1827] w=0.5191 to align # Constraint # added constraint: constraint((T0378)L200.CB, (T0378)C247.CB) [> 4.1945 = 6.9908 < 9.0880] w=0.5191 to align # Constraint # added constraint: constraint((T0378)I174.CB, (T0378)P197.CB) [> 3.1935 = 5.3225 < 6.9192] w=0.5171 to align # Constraint # added constraint: constraint((T0378)G132.CA, (T0378)T165.CB) [> 3.7774 = 6.2957 < 8.1844] w=0.5111 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)L159.CB) [> 3.4886 = 5.8143 < 7.5586] w=0.5089 to align # Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)P192.CB) [> 3.8803 = 6.4672 < 8.4073] w=0.5000 to align # Constraint # added constraint: constraint((T0378)F124.CB, (T0378)S248.CB) [> 3.6253 = 6.0423 < 7.8549] w=0.4983 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)V213.CB) [> 3.8292 = 6.3820 < 8.2966] w=0.4980 to align # Constraint # added constraint: constraint((T0378)R119.CB, (T0378)A150.CB) [> 3.0820 = 5.1367 < 6.6777] w=0.4979 to align # Constraint # added constraint: constraint((T0378)G115.CA, (T0378)S147.CB) [> 3.0538 = 5.0897 < 6.6166] w=0.4971 to align # Constraint # added constraint: constraint((T0378)I174.CB, (T0378)I199.CB) [> 2.9652 = 4.9420 < 6.4246] w=0.4814 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)G203.CA) [> 3.8871 = 6.4785 < 8.4221] w=0.4810 to align # Constraint # added constraint: constraint((T0378)R119.CB, (T0378)S147.CB) [> 3.7120 = 6.1866 < 8.0427] w=0.4786 to align # Constraint # added constraint: constraint((T0378)F124.CB, (T0378)C247.CB) [> 2.8979 = 4.8298 < 6.2787] w=0.4777 to align # Constraint # added constraint: constraint((T0378)I117.CB, (T0378)A240.CB) [> 3.1224 = 5.2040 < 6.7652] w=0.4777 to align # Constraint # added constraint: constraint((T0378)R119.CB, (T0378)A146.CB) [> 3.6583 = 6.0972 < 7.9264] w=0.4768 to align # Constraint # added constraint: constraint((T0378)L118.CB, (T0378)L151.CB) [> 3.6430 = 6.0717 < 7.8932] w=0.4755 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)H128.CB) [> 4.4601 = 7.4336 < 9.6636] w=0.4730 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)V64.CB) [> 3.4834 = 5.8057 < 7.5473] w=0.4685 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)V201.CB) [> 4.2688 = 7.1146 < 9.2490] w=0.4677 to align # Constraint # added constraint: constraint((T0378)D122.CB, (T0378)R153.CB) [> 3.6829 = 6.1382 < 7.9797] w=0.4618 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)R220.CB) [> 3.1058 = 5.1763 < 6.7292] w=0.4606 to align # Constraint # added constraint: constraint((T0378)G115.CA, (T0378)A150.CB) [> 3.8614 = 6.4357 < 8.3664] w=0.4590 to align # Constraint # added constraint: constraint((T0378)T116.CB, (T0378)A240.CB) [> 2.4399 = 4.0665 < 5.2864] w=0.4582 to align # Constraint # added constraint: constraint((T0378)E205.CB, (T0378)V239.CB) [> 3.2193 = 5.3656 < 6.9752] w=0.4566 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)P197.CB) [> 4.4194 = 7.3657 < 9.5754] w=0.4534 to align # Constraint # added constraint: constraint((T0378)I223.CB, (T0378)L246.CB) [> 4.2767 = 7.1278 < 9.2661] w=0.4522 to align # Constraint # added constraint: constraint((T0378)L202.CB, (T0378)A242.CB) [> 3.6795 = 6.1326 < 7.9724] w=0.4522 to align # Constraint # added constraint: constraint((T0378)L200.CB, (T0378)L246.CB) [> 3.4664 = 5.7774 < 7.5106] w=0.4522 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)T165.CB) [> 3.6074 = 6.0123 < 7.8160] w=0.4521 to align # Constraint # added constraint: constraint((T0378)G47.CA, (T0378)L66.CB) [> 3.5132 = 5.8554 < 7.6120] w=0.4498 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)I209.CB) [> 3.5479 = 5.9131 < 7.6870] w=0.4494 to align # Constraint # added constraint: constraint((T0378)L45.CB, (T0378)V64.CB) [> 3.9636 = 6.6060 < 8.5878] w=0.4491 to align # Constraint # added constraint: constraint((T0378)L45.CB, (T0378)V63.CB) [> 3.3087 = 5.5144 < 7.1688] w=0.4491 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)I199.CB) [> 4.5426 = 7.5709 < 9.8422] w=0.4476 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)A214.CB) [> 4.2806 = 7.1343 < 9.2745] w=0.4404 to align # Constraint # added constraint: constraint((T0378)V176.CB, (T0378)D219.CB) [> 4.3036 = 7.1726 < 9.3244] w=0.4403 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)L221.CB) [> 3.4978 = 5.8297 < 7.5786] w=0.4399 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)T162.CB) [> 4.2899 = 7.1498 < 9.2947] w=0.4366 to align # Constraint # added constraint: constraint((T0378)G115.CA, (T0378)V143.CB) [> 3.4301 = 5.7168 < 7.4319] w=0.4362 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)I209.CB) [> 4.2183 = 7.0304 < 9.1396] w=0.4356 to align # Constraint # added constraint: constraint((T0378)G132.CA, (T0378)N161.CB) [> 4.1697 = 6.9496 < 9.0344] w=0.4334 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)G134.CA) [> 3.9250 = 6.5417 < 8.5042] w=0.4295 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)T165.CB) [> 3.6651 = 6.1085 < 7.9410] w=0.4230 to align # Constraint # added constraint: constraint((T0378)P175.CB, (T0378)D219.CB) [> 4.2473 = 7.0788 < 9.2024] w=0.4196 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)A242.CB) [> 3.7896 = 6.3160 < 8.2108] w=0.4196 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)L246.CB) [> 3.9487 = 6.5811 < 8.5555] w=0.4196 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)T222.CB) [> 3.6311 = 6.0518 < 7.8674] w=0.4191 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)L221.CB) [> 4.4414 = 7.4024 < 9.6231] w=0.4191 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)D219.CB) [> 3.9388 = 6.5647 < 8.5342] w=0.4191 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)T243.CB) [> 3.9789 = 6.6315 < 8.6209] w=0.4168 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)C247.CB) [> 4.1879 = 6.9798 < 9.0737] w=0.4168 to align # Constraint # added constraint: constraint((T0378)V108.CB, (T0378)V239.CB) [> 3.8652 = 6.4420 < 8.3746] w=0.4168 to align # Constraint # added constraint: constraint((T0378)N113.CB, (T0378)V239.CB) [> 3.3124 = 5.5206 < 7.1768] w=0.4168 to align # Constraint # added constraint: constraint((T0378)N113.CB, (T0378)A240.CB) [> 3.0207 = 5.0345 < 6.5448] w=0.4168 to align # Constraint # added constraint: constraint((T0378)I117.CB, (T0378)V239.CB) [> 4.2923 = 7.1538 < 9.3000] w=0.4168 to align # Constraint # added constraint: constraint((T0378)I117.CB, (T0378)T243.CB) [> 2.9697 = 4.9495 < 6.4344] w=0.4168 to align # Constraint # added constraint: constraint((T0378)T120.CB, (T0378)T243.CB) [> 3.5284 = 5.8807 < 7.6448] w=0.4168 to align # Constraint # added constraint: constraint((T0378)T120.CB, (T0378)C247.CB) [> 3.6519 = 6.0865 < 7.9124] w=0.4168 to align # Constraint # added constraint: constraint((T0378)A121.CB, (T0378)C247.CB) [> 4.0135 = 6.6892 < 8.6959] w=0.4168 to align # Constraint # added constraint: constraint((T0378)I126.CB, (T0378)C247.CB) [> 3.8973 = 6.4954 < 8.4441] w=0.4168 to align # Constraint # added constraint: constraint((T0378)P192.CB, (T0378)L221.CB) [> 3.3411 = 5.5684 < 7.2390] w=0.4166 to align # Constraint # added constraint: constraint((T0378)R127.CB, (T0378)V154.CB) [> 3.7858 = 6.3096 < 8.2025] w=0.4154 to align # Constraint # added constraint: constraint((T0378)F124.CB, (T0378)A244.CB) [> 3.7598 = 6.2664 < 8.1463] w=0.4144 to align # Constraint # added constraint: constraint((T0378)T48.CB, (T0378)L66.CB) [> 3.8058 = 6.3430 < 8.2459] w=0.4141 to align # Constraint # added constraint: constraint((T0378)G47.CA, (T0378)M85.CB) [> 4.2028 = 7.0046 < 9.1060] w=0.4124 to align # Constraint # added constraint: constraint((T0378)V114.CB, (T0378)S147.CB) [> 4.1851 = 6.9751 < 9.0676] w=0.4121 to align # Constraint # added constraint: constraint((T0378)P111.CB, (T0378)D137.CB) [> 3.5683 = 5.9472 < 7.7313] w=0.4115 to align # Constraint # added constraint: constraint((T0378)I223.CB, (T0378)I245.CB) [> 3.5544 = 5.9240 < 7.7012] w=0.4106 to align # Constraint # added constraint: constraint((T0378)I223.CB, (T0378)A242.CB) [> 3.6642 = 6.1069 < 7.9390] w=0.4106 to align # Constraint # added constraint: constraint((T0378)G47.CA, (T0378)E65.CB) [> 3.6629 = 6.1048 < 7.9363] w=0.4097 to align # Constraint # added constraint: constraint((T0378)M44.CB, (T0378)V63.CB) [> 4.1444 = 6.9073 < 8.9795] w=0.4082 to align # Constraint # added constraint: constraint((T0378)V27.CB, (T0378)A86.CB) [> 2.9556 = 4.9260 < 6.4038] w=0.4079 to align # Constraint # added constraint: constraint((T0378)V108.CB, (T0378)S135.CB) [> 3.8644 = 6.4407 < 8.3729] w=0.4007 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)I209.CB) [> 3.7136 = 6.1894 < 8.0462] w=0.3988 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)G208.CA) [> 4.1305 = 6.8841 < 8.9493] w=0.3987 to align # Constraint # added constraint: constraint((T0378)P111.CB, (T0378)A146.CB) [> 4.4006 = 7.3343 < 9.5346] w=0.3951 to align # Constraint # added constraint: constraint((T0378)I223.CB, (T0378)L237.CB) [> 3.9146 = 6.5244 < 8.4817] w=0.3947 to align # Constraint # added constraint: constraint((T0378)G115.CA, (T0378)L151.CB) [> 4.1453 = 6.9089 < 8.9816] w=0.3943 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)C247.CB) [> 4.3819 = 7.3032 < 9.4942] w=0.3940 to align # Constraint # added constraint: constraint((T0378)L45.CB, (T0378)A86.CB) [> 3.2761 = 5.4601 < 7.0982] w=0.3923 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)M85.CB) [> 3.3110 = 5.5183 < 7.1738] w=0.3923 to align # Constraint # added constraint: constraint((T0378)G47.CA, (T0378)L84.CB) [> 3.1635 = 5.2726 < 6.8544] w=0.3921 to align # Constraint # added constraint: constraint((T0378)Q109.CB, (T0378)A136.CB) [> 3.6951 = 6.1586 < 8.0061] w=0.3888 to align # Constraint # added constraint: constraint((T0378)A26.CB, (T0378)M85.CB) [> 3.5417 = 5.9028 < 7.6737] w=0.3871 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)G208.CA) [> 4.4450 = 7.4082 < 9.6307] w=0.3868 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)S135.CB) [> 3.7961 = 6.3269 < 8.2250] w=0.3855 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)A214.CB) [> 3.6212 = 6.0354 < 7.8460] w=0.3778 to align # Constraint # added constraint: constraint((T0378)V108.CB, (T0378)G203.CA) [> 4.2091 = 7.0152 < 9.1197] w=0.3773 to align # Constraint # added constraint: constraint((T0378)V33.CB, (T0378)L45.CB) [> 3.8699 = 6.4498 < 8.3848] w=0.3770 to align # Constraint # added constraint: constraint((T0378)L200.CB, (T0378)W250.CB) [> 4.3913 = 7.3189 < 9.5145] w=0.3752 to align # Constraint # added constraint: constraint((T0378)A198.CB, (T0378)W250.CB) [> 4.1748 = 6.9581 < 9.0455] w=0.3752 to align # Constraint # added constraint: constraint((T0378)F194.CB, (T0378)W250.CB) [> 2.2891 = 3.8151 < 4.9597] w=0.3752 to align # Constraint # added constraint: constraint((T0378)F194.CB, (T0378)E249.CB) [> 4.0715 = 6.7859 < 8.8217] w=0.3752 to align # Constraint # added constraint: constraint((T0378)F124.CB, (T0378)R251.CB) [> 2.9650 = 4.9416 < 6.4241] w=0.3752 to align # Constraint # added constraint: constraint((T0378)R119.CB, (T0378)M148.CB) [> 3.5187 = 5.8645 < 7.6238] w=0.3752 to align # Constraint # added constraint: constraint((T0378)G115.CA, (T0378)A240.CB) [> 4.5970 = 7.6617 < 9.9602] w=0.3752 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)S210.CB) [> 4.0363 = 6.7271 < 8.7453] w=0.3752 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)W250.CB) [> 3.6628 = 6.1046 < 7.9360] w=0.3752 to align # Constraint # added constraint: constraint((T0378)G112.CA, (T0378)A146.CB) [> 3.2746 = 5.4577 < 7.0950] w=0.3741 to align # Constraint # added constraint: constraint((T0378)G115.CA, (T0378)K142.CB) [> 4.3979 = 7.3299 < 9.5288] w=0.3738 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)F124.CB) [> 4.4182 = 7.3637 < 9.5728] w=0.3718 to align # Constraint # added constraint: constraint((T0378)V108.CB, (T0378)G132.CA) [> 3.8877 = 6.4795 < 8.4233] w=0.3670 to align # Constraint # added constraint: constraint((T0378)M44.CB, (T0378)E62.CB) [> 3.4384 = 5.7307 < 7.4499] w=0.3667 to align # Constraint # added constraint: constraint((T0378)E28.CB, (T0378)M85.CB) [> 2.9768 = 4.9614 < 6.4498] w=0.3663 to align # Constraint # added constraint: constraint((T0378)A26.CB, (T0378)V87.CB) [> 3.6493 = 6.0821 < 7.9067] w=0.3663 to align # Constraint # added constraint: constraint((T0378)F25.CB, (T0378)V87.CB) [> 4.5580 = 7.5967 < 9.8756] w=0.3663 to align # Constraint # added constraint: constraint((T0378)A26.CB, (T0378)A86.CB) [> 4.0669 = 6.7781 < 8.8116] w=0.3663 to align # Constraint # added constraint: constraint((T0378)F25.CB, (T0378)F88.CB) [> 3.2563 = 5.4271 < 7.0553] w=0.3663 to align # Constraint # added constraint: constraint((T0378)R43.CB, (T0378)E62.CB) [> 4.1218 = 6.8696 < 8.9305] w=0.3655 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L66.CB) [> 3.4098 = 5.6831 < 7.3880] w=0.3649 to align # Constraint # added constraint: constraint((T0378)V176.CB, (T0378)L200.CB) [> 4.4576 = 7.4293 < 9.6581] w=0.3631 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)G178.CA) [> 3.4303 = 5.7171 < 7.4322] w=0.3605 to align # Constraint # added constraint: constraint((T0378)V176.CB, (T0378)T218.CB) [> 3.1017 = 5.1695 < 6.7204] w=0.3570 to align # Constraint # added constraint: constraint((T0378)Q109.CB, (T0378)S204.CB) [> 3.5617 = 5.9362 < 7.7170] w=0.3543 to align # Constraint # added constraint: constraint((T0378)V163.CB, (T0378)E216.CB) [> 3.3313 = 5.5522 < 7.2178] w=0.3536 to align # Constraint # added constraint: constraint((T0378)A121.CB, (T0378)A150.CB) [> 4.1389 = 6.8981 < 8.9675] w=0.3533 to align # Constraint # added constraint: constraint((T0378)R43.CB, (T0378)F88.CB) [> 3.9218 = 6.5363 < 8.4972] w=0.3518 to align # Constraint # added constraint: constraint((T0378)G29.CA, (T0378)Q82.CB) [> 3.0007 = 5.0011 < 6.5015] w=0.3518 to align # Constraint # added constraint: constraint((T0378)E28.CB, (T0378)Q82.CB) [> 3.2271 = 5.3786 < 6.9921] w=0.3518 to align # Constraint # added constraint: constraint((T0378)L45.CB, (T0378)E62.CB) [> 4.1922 = 6.9871 < 9.0832] w=0.3515 to align # Constraint # added constraint: constraint((T0378)G47.CA, (T0378)V63.CB) [> 4.2084 = 7.0141 < 9.1183] w=0.3512 to align # Constraint # added constraint: constraint((T0378)V114.CB, (T0378)A146.CB) [> 3.4328 = 5.7213 < 7.4377] w=0.3508 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)A86.CB) [> 4.1514 = 6.9190 < 8.9947] w=0.3507 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L84.CB) [> 4.0915 = 6.8192 < 8.8649] w=0.3507 to align # Constraint # added constraint: constraint((T0378)L45.CB, (T0378)V87.CB) [> 4.2611 = 7.1018 < 9.2324] w=0.3507 to align # Constraint # added constraint: constraint((T0378)M44.CB, (T0378)V87.CB) [> 2.6963 = 4.4938 < 5.8419] w=0.3507 to align # Constraint # added constraint: constraint((T0378)M44.CB, (T0378)A86.CB) [> 4.2314 = 7.0523 < 9.1680] w=0.3507 to align # Constraint # added constraint: constraint((T0378)R43.CB, (T0378)V87.CB) [> 3.2794 = 5.4656 < 7.1053] w=0.3507 to align # Constraint # added constraint: constraint((T0378)A26.CB, (T0378)F88.CB) [> 4.1466 = 6.9111 < 8.9844] w=0.3455 to align # Constraint # added constraint: constraint((T0378)G100.CA, (T0378)E196.CB) [> 4.3164 = 7.1940 < 9.3521] w=0.3429 to align # Constraint # added constraint: constraint((T0378)H128.CB, (T0378)Y177.CB) [> 3.7313 = 6.2188 < 8.0844] w=0.3411 to align # Constraint # added constraint: constraint((T0378)S147.CB, (T0378)P156.CB) [> 3.0487 = 5.0812 < 6.6055] w=0.3395 to align # Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)T218.CB) [> 3.9994 = 6.6656 < 8.6653] w=0.3362 to align # Constraint # added constraint: constraint((T0378)P175.CB, (T0378)T218.CB) [> 2.9208 = 4.8680 < 6.3284] w=0.3362 to align # Constraint # added constraint: constraint((T0378)F169.CB, (T0378)I199.CB) [> 3.4057 = 5.6761 < 7.3790] w=0.3335 to align # Constraint # added constraint: constraint((T0378)V114.CB, (T0378)D137.CB) [> 4.1011 = 6.8352 < 8.8857] w=0.3334 to align # Constraint # added constraint: constraint((T0378)S135.CB, (T0378)S204.CB) [> 3.3038 = 5.5064 < 7.1583] w=0.3325 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)V87.CB) [> 4.5820 = 7.6367 < 9.9277] w=0.3309 to align # Constraint # added constraint: constraint((T0378)C42.CB, (T0378)F88.CB) [> 3.6230 = 6.0384 < 7.8499] w=0.3309 to align # Constraint # added constraint: constraint((T0378)V27.CB, (T0378)F88.CB) [> 3.4695 = 5.7826 < 7.5174] w=0.3309 to align # Constraint # added constraint: constraint((T0378)V27.CB, (T0378)M85.CB) [> 4.0336 = 6.7227 < 8.7395] w=0.3309 to align # Constraint # added constraint: constraint((T0378)L202.CB, (T0378)L246.CB) [> 4.3775 = 7.2959 < 9.4846] w=0.3271 to align # Constraint # added constraint: constraint((T0378)T133.CB, (T0378)T162.CB) [> 4.2075 = 7.0125 < 9.1162] w=0.3259 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)Y177.CB) [> 3.0808 = 5.1347 < 6.6751] w=0.3248 to align # Constraint # added constraint: constraint((T0378)V33.CB, (T0378)L84.CB) [> 3.2553 = 5.4254 < 7.0531] w=0.3247 to align # Constraint # added constraint: constraint((T0378)G29.CA, (T0378)M85.CB) [> 4.1490 = 6.9150 < 8.9895] w=0.3247 to align # Constraint # added constraint: constraint((T0378)T48.CB, (T0378)P67.CB) [> 4.1297 = 6.8829 < 8.9478] w=0.3231 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)A179.CB) [> 3.5094 = 5.8490 < 7.6037] w=0.3196 to align # Constraint # added constraint: constraint((T0378)G132.CA, (T0378)A179.CB) [> 3.3003 = 5.5005 < 7.1507] w=0.3195 to align # Constraint # added constraint: constraint((T0378)T133.CB, (T0378)N161.CB) [> 3.8311 = 6.3851 < 8.3006] w=0.3175 to align # Constraint # added constraint: constraint((T0378)L186.CB, (T0378)L221.CB) [> 3.6486 = 6.0810 < 7.9053] w=0.3151 to align # Constraint # added constraint: constraint((T0378)E205.CB, (T0378)N238.CB) [> 4.3107 = 7.1845 < 9.3398] w=0.3127 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)S236.CB) [> 3.7218 = 6.2031 < 8.0640] w=0.3127 to align # Constraint # added constraint: constraint((T0378)G125.CA, (T0378)R251.CB) [> 4.4520 = 7.4200 < 9.6460] w=0.3127 to align # Constraint # added constraint: constraint((T0378)F124.CB, (T0378)W250.CB) [> 4.1240 = 6.8733 < 8.9353] w=0.3127 to align # Constraint # added constraint: constraint((T0378)N113.CB, (T0378)N238.CB) [> 4.3082 = 7.1803 < 9.3343] w=0.3127 to align # Constraint # added constraint: constraint((T0378)G203.CA, (T0378)V213.CB) [> 4.6049 = 7.6748 < 9.9773] w=0.3125 to align # Constraint # added constraint: constraint((T0378)Y187.CB, (T0378)P224.CB) [> 3.9757 = 6.6261 < 8.6139] w=0.3117 to align # Constraint # added constraint: constraint((T0378)L186.CB, (T0378)P224.CB) [> 3.4305 = 5.7174 < 7.4327] w=0.3115 to align # Constraint # added constraint: constraint((T0378)V129.CB, (T0378)V143.CB) [> 4.4250 = 7.3751 < 9.5876] w=0.3106 to align # Constraint # added constraint: constraint((T0378)P30.CB, (T0378)P83.CB) [> 3.9251 = 6.5418 < 8.5043] w=0.3101 to align # Constraint # added constraint: constraint((T0378)P30.CB, (T0378)L84.CB) [> 3.3186 = 5.5310 < 7.1904] w=0.3101 to align # Constraint # added constraint: constraint((T0378)V33.CB, (T0378)A86.CB) [> 2.9440 = 4.9067 < 6.3787] w=0.3101 to align # Constraint # added constraint: constraint((T0378)G47.CA, (T0378)F72.CB) [> 4.2266 = 7.0443 < 9.1576] w=0.3101 to align # Constraint # added constraint: constraint((T0378)T48.CB, (T0378)P83.CB) [> 3.2401 = 5.4003 < 7.0203] w=0.3101 to align # Constraint # added constraint: constraint((T0378)F72.CB, (T0378)P81.CB) [> 3.7042 = 6.1737 < 8.0258] w=0.3101 to align # Constraint # added constraint: constraint((T0378)F72.CB, (T0378)P83.CB) [> 4.5392 = 7.5653 < 9.8349] w=0.3101 to align # Constraint # added constraint: constraint((T0378)F72.CB, (T0378)M85.CB) [> 3.6731 = 6.1219 < 7.9584] w=0.3101 to align # Constraint # added constraint: constraint((T0378)I75.CB, (T0378)M85.CB) [> 4.1927 = 6.9879 < 9.0843] w=0.3101 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)V176.CB) [> 4.1540 = 6.9233 < 9.0002] w=0.3044 to align # Constraint # added constraint: constraint((T0378)G100.CA, (T0378)I126.CB) [> 4.2591 = 7.0985 < 9.2280] w=0.3007 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)I199.CB) [> 3.3988 = 5.6647 < 7.3641] w=0.3006 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)F169.CB) [> 4.1139 = 6.8566 < 8.9136] w=0.3000 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)V176.CB) [> 3.6669 = 6.1116 < 7.9450] w=0.2981 to align # Constraint # added constraint: constraint((T0378)E188.CB, (T0378)E249.CB) [> 3.6705 = 6.1175 < 7.9527] w=0.2945 to align # Constraint # added constraint: constraint((T0378)P192.CB, (T0378)E249.CB) [> 4.6353 = 7.7255 < 10.0432] w=0.2918 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)T243.CB) [> 4.4701 = 7.4502 < 9.6853] w=0.2917 to align # Constraint # added constraint: constraint((T0378)Q109.CB, (T0378)E205.CB) [> 3.4790 = 5.7984 < 7.5379] w=0.2914 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)G208.CA) [> 4.2362 = 7.0604 < 9.1785] w=0.2897 to align # Constraint # added constraint: constraint((T0378)G29.CA, (T0378)P83.CB) [> 3.9587 = 6.5978 < 8.5771] w=0.2892 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)L166.CB) [> 4.3879 = 7.3131 < 9.5071] w=0.2889 to align # Constraint # added constraint: constraint((T0378)E205.CB, (T0378)S236.CB) [> 3.7020 = 6.1699 < 8.0209] w=0.2885 to align # Constraint # added constraint: constraint((T0378)L45.CB, (T0378)M85.CB) [> 4.4870 = 7.4783 < 9.7218] w=0.2882 to align # Constraint # added constraint: constraint((T0378)P111.CB, (T0378)A136.CB) [> 3.4630 = 5.7717 < 7.5032] w=0.2836 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)W130.CB) [> 3.8615 = 6.4358 < 8.3666] w=0.2798 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)I199.CB) [> 4.1683 = 6.9471 < 9.0312] w=0.2798 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)L181.CB) [> 4.1117 = 6.8528 < 8.9086] w=0.2776 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)G178.CA) [> 4.0210 = 6.7017 < 8.7122] w=0.2776 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)Y177.CB) [> 4.1060 = 6.8433 < 8.8963] w=0.2776 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)V176.CB) [> 4.1144 = 6.8573 < 8.9145] w=0.2776 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)G178.CA) [> 3.3943 = 5.6572 < 7.3543] w=0.2755 to align # Constraint # added constraint: constraint((T0378)P111.CB, (T0378)V143.CB) [> 2.9845 = 4.9742 < 6.4665] w=0.2746 to align # Constraint # added constraint: constraint((T0378)H128.CB, (T0378)I174.CB) [> 3.4648 = 5.7746 < 7.5070] w=0.2744 to align # Constraint # added constraint: constraint((T0378)V144.CB, (T0378)P156.CB) [> 3.0347 = 5.0578 < 6.5751] w=0.2740 to align # Constraint # added constraint: constraint((T0378)Q184.CB, (T0378)R220.CB) [> 3.9751 = 6.6251 < 8.6127] w=0.2737 to align # Constraint # added constraint: constraint((T0378)D182.CB, (T0378)R220.CB) [> 4.0998 = 6.8329 < 8.8828] w=0.2737 to align # Constraint # added constraint: constraint((T0378)Q184.CB, (T0378)T222.CB) [> 4.3211 = 7.2019 < 9.3625] w=0.2729 to align # Constraint # added constraint: constraint((T0378)G112.CA, (T0378)K142.CB) [> 3.0886 = 5.1477 < 6.6920] w=0.2710 to align # Constraint # added constraint: constraint((T0378)T116.CB, (T0378)A146.CB) [> 3.1031 = 5.1718 < 6.7234] w=0.2710 to align # Constraint # added constraint: constraint((T0378)L186.CB, (T0378)I223.CB) [> 3.9310 = 6.5517 < 8.5172] w=0.2698 to align # Constraint # added constraint: constraint((T0378)M36.CB, (T0378)F88.CB) [> 3.7034 = 6.1723 < 8.0239] w=0.2698 to align # Constraint # added constraint: constraint((T0378)V27.CB, (T0378)M36.CB) [> 3.5021 = 5.8368 < 7.5879] w=0.2696 to align # Constraint # added constraint: constraint((T0378)R43.CB, (T0378)D89.CB) [> 4.2641 = 7.1068 < 9.2388] w=0.2685 to align # Constraint # added constraint: constraint((T0378)T48.CB, (T0378)L84.CB) [> 3.9692 = 6.6153 < 8.5999] w=0.2685 to align # Constraint # added constraint: constraint((T0378)A24.CB, (T0378)D89.CB) [> 3.1601 = 5.2668 < 6.8468] w=0.2684 to align # Constraint # added constraint: constraint((T0378)G47.CA, (T0378)P83.CB) [> 4.0170 = 6.6949 < 8.7034] w=0.2684 to align # Constraint # added constraint: constraint((T0378)T48.CB, (T0378)F72.CB) [> 3.3529 = 5.5882 < 7.2647] w=0.2682 to align # Constraint # added constraint: constraint((T0378)E205.CB, (T0378)G232.CA) [> 4.3416 = 7.2360 < 9.4068] w=0.2669 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)V201.CB) [> 3.6069 = 6.0116 < 7.8150] w=0.2652 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)A136.CB) [> 3.7351 = 6.2252 < 8.0927] w=0.2636 to align # Constraint # added constraint: constraint((T0378)T133.CB, (T0378)L159.CB) [> 3.5504 = 5.9173 < 7.6925] w=0.2627 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)R127.CB) [> 4.1191 = 6.8651 < 8.9246] w=0.2600 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)G178.CA) [> 3.3335 = 5.5558 < 7.2225] w=0.2580 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)Y177.CB) [> 4.4155 = 7.3592 < 9.5670] w=0.2580 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)F180.CB) [> 3.2527 = 5.4212 < 7.0476] w=0.2548 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)F169.CB) [> 4.1918 = 6.9862 < 9.0821] w=0.2522 to align # Constraint # added constraint: constraint((T0378)G134.CA, (T0378)P158.CB) [> 3.8239 = 6.3732 < 8.2851] w=0.2519 to align # Constraint # added constraint: constraint((T0378)G112.CA, (T0378)V143.CB) [> 3.6972 = 6.1619 < 8.0105] w=0.2501 to align # Constraint # added constraint: constraint((T0378)G112.CA, (T0378)A240.CB) [> 4.4942 = 7.4903 < 9.7374] w=0.2501 to align # Constraint # added constraint: constraint((T0378)T116.CB, (T0378)A244.CB) [> 4.6917 = 7.8196 < 10.1654] w=0.2501 to align # Constraint # added constraint: constraint((T0378)W123.CB, (T0378)C247.CB) [> 4.7291 = 7.8818 < 10.2464] w=0.2501 to align # Constraint # added constraint: constraint((T0378)N193.CB, (T0378)R253.CB) [> 4.2989 = 7.1649 < 9.3143] w=0.2501 to align # Constraint # added constraint: constraint((T0378)F194.CB, (T0378)R253.CB) [> 3.1003 = 5.1671 < 6.7172] w=0.2501 to align # Constraint # added constraint: constraint((T0378)L221.CB, (T0378)L246.CB) [> 4.3808 = 7.3013 < 9.4917] w=0.2501 to align # Constraint # added constraint: constraint((T0378)N113.CB, (T0378)E205.CB) [> 3.8715 = 6.4525 < 8.3882] w=0.2501 to align # Constraint # added constraint: constraint((T0378)V163.CB, (T0378)V213.CB) [> 3.6878 = 6.1463 < 7.9902] w=0.2493 to align # Constraint # added constraint: constraint((T0378)G134.CA, (T0378)S204.CB) [> 4.2041 = 7.0069 < 9.1089] w=0.2491 to align # Constraint # added constraint: constraint((T0378)G134.CA, (T0378)S210.CB) [> 3.8935 = 6.4892 < 8.4359] w=0.2491 to align # Constraint # added constraint: constraint((T0378)S135.CB, (T0378)G206.CA) [> 3.8048 = 6.3414 < 8.2438] w=0.2491 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)T222.CB) [> 3.6951 = 6.1585 < 8.0060] w=0.2491 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)I223.CB) [> 3.5014 = 5.8356 < 7.5863] w=0.2491 to align # Constraint # added constraint: constraint((T0378)E99.CB, (T0378)P197.CB) [> 3.3588 = 5.5981 < 7.2775] w=0.2491 to align # Constraint # added constraint: constraint((T0378)M36.CB, (T0378)A86.CB) [> 3.9669 = 6.6116 < 8.5950] w=0.2490 to align # Constraint # added constraint: constraint((T0378)V176.CB, (T0378)L221.CB) [> 3.4439 = 5.7399 < 7.4619] w=0.2489 to align # Constraint # added constraint: constraint((T0378)G208.CA, (T0378)V239.CB) [> 3.8889 = 6.4815 < 8.4259] w=0.2486 to align # Constraint # added constraint: constraint((T0378)W123.CB, (T0378)A244.CB) [> 4.4962 = 7.4937 < 9.7418] w=0.2485 to align # Constraint # added constraint: constraint((T0378)A24.CB, (T0378)L90.CB) [> 3.8287 = 6.3812 < 8.2956] w=0.2476 to align # Constraint # added constraint: constraint((T0378)V33.CB, (T0378)M85.CB) [> 4.3248 = 7.2080 < 9.3704] w=0.2476 to align # Constraint # added constraint: constraint((T0378)R41.CB, (T0378)F88.CB) [> 3.2856 = 5.4759 < 7.1187] w=0.2476 to align # Constraint # added constraint: constraint((T0378)C42.CB, (T0378)A86.CB) [> 2.8556 = 4.7593 < 6.1870] w=0.2476 to align # Constraint # added constraint: constraint((T0378)S76.CB, (T0378)M85.CB) [> 3.4282 = 5.7137 < 7.4278] w=0.2476 to align # Constraint # added constraint: constraint((T0378)V201.CB, (T0378)L221.CB) [> 3.9204 = 6.5341 < 8.4943] w=0.2472 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)S147.CB) [> 3.7038 = 6.1730 < 8.0249] w=0.2449 to align # Constraint # added constraint: constraint((T0378)I174.CB, (T0378)E196.CB) [> 3.0394 = 5.0656 < 6.5853] w=0.2433 to align # Constraint # added constraint: constraint((T0378)R127.CB, (T0378)I174.CB) [> 3.6607 = 6.1011 < 7.9314] w=0.2431 to align # Constraint # added constraint: constraint((T0378)R127.CB, (T0378)P175.CB) [> 3.4988 = 5.8313 < 7.5807] w=0.2431 to align # Constraint # added constraint: constraint((T0378)C42.CB, (T0378)A61.CB) [> 3.0159 = 5.0265 < 6.5345] w=0.2425 to align # Constraint # added constraint: constraint((T0378)M44.CB, (T0378)A61.CB) [> 4.3088 = 7.1814 < 9.3358] w=0.2424 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)L181.CB) [> 3.3645 = 5.6076 < 7.2898] w=0.2398 to align # Constraint # added constraint: constraint((T0378)V129.CB, (T0378)F169.CB) [> 3.1510 = 5.2517 < 6.8272] w=0.2390 to align # Constraint # added constraint: constraint((T0378)T133.CB, (T0378)V143.CB) [> 3.3485 = 5.5808 < 7.2551] w=0.2373 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)V201.CB) [> 4.5620 = 7.6033 < 9.8843] w=0.2350 to align # Constraint # added constraint: constraint((T0378)F139.CB, (T0378)P156.CB) [> 3.7802 = 6.3003 < 8.1904] w=0.2346 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)L202.CB) [> 3.0558 = 5.0929 < 6.6208] w=0.2341 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)V176.CB) [> 3.3692 = 5.6154 < 7.3000] w=0.2340 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)P175.CB) [> 3.6253 = 6.0422 < 7.8548] w=0.2340 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)G203.CA) [> 3.9309 = 6.5515 < 8.5169] w=0.2337 to align # Constraint # added constraint: constraint((T0378)G173.CA, (T0378)P197.CB) [> 3.3716 = 5.6193 < 7.3051] w=0.2315 to align # Constraint # added constraint: constraint((T0378)V114.CB, (T0378)F139.CB) [> 3.9822 = 6.6369 < 8.6280] w=0.2292 to align # Constraint # added constraint: constraint((T0378)A121.CB, (T0378)T243.CB) [> 4.1874 = 6.9791 < 9.0728] w=0.2292 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)V239.CB) [> 4.3910 = 7.3183 < 9.5138] w=0.2292 to align # Constraint # added constraint: constraint((T0378)Y187.CB, (T0378)L246.CB) [> 3.2981 = 5.4969 < 7.1459] w=0.2290 to align # Constraint # added constraint: constraint((T0378)L191.CB, (T0378)L221.CB) [> 4.3288 = 7.2147 < 9.3791] w=0.2287 to align # Constraint # added constraint: constraint((T0378)E188.CB, (T0378)P224.CB) [> 3.5085 = 5.8476 < 7.6019] w=0.2285 to align # Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)I223.CB) [> 3.5299 = 5.8831 < 7.6480] w=0.2283 to align # Constraint # added constraint: constraint((T0378)L166.CB, (T0378)I199.CB) [> 4.2340 = 7.0567 < 9.1737] w=0.2279 to align # Constraint # added constraint: constraint((T0378)V176.CB, (T0378)R220.CB) [> 3.5390 = 5.8983 < 7.6678] w=0.2278 to align # Constraint # added constraint: constraint((T0378)L45.CB, (T0378)A61.CB) [> 3.5290 = 5.8817 < 7.6462] w=0.2273 to align # Constraint # added constraint: constraint((T0378)L13.CB, (T0378)V87.CB) [> 4.1939 = 6.9898 < 9.0868] w=0.2268 to align # Constraint # added constraint: constraint((T0378)R43.CB, (T0378)A86.CB) [> 4.2007 = 7.0012 < 9.1016] w=0.2268 to align # Constraint # added constraint: constraint((T0378)A225.CB, (T0378)A242.CB) [> 3.9819 = 6.6365 < 8.6274] w=0.2268 to align # Constraint # added constraint: constraint((T0378)V27.CB, (T0378)C42.CB) [> 4.0785 = 6.7975 < 8.8367] w=0.2265 to align # Constraint # added constraint: constraint((T0378)L200.CB, (T0378)L221.CB) [> 3.6053 = 6.0088 < 7.8115] w=0.2259 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)A198.CB) [> 3.8981 = 6.4969 < 8.4459] w=0.2241 to align # Constraint # added constraint: constraint((T0378)V33.CB, (T0378)C42.CB) [> 4.3193 = 7.1988 < 9.3584] w=0.2231 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)Y177.CB) [> 3.3379 = 5.5632 < 7.2321] w=0.2228 to align # Constraint # added constraint: constraint((T0378)R43.CB, (T0378)A61.CB) [> 4.3483 = 7.2472 < 9.4213] w=0.2217 to align # Constraint # added constraint: constraint((T0378)E28.CB, (T0378)A86.CB) [> 4.6649 = 7.7748 < 10.1072] w=0.2204 to align # Constraint # added constraint: constraint((T0378)G134.CA, (T0378)L181.CB) [> 4.0596 = 6.7660 < 8.7958] w=0.2171 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)G178.CA) [> 3.8010 = 6.3351 < 8.2356] w=0.2154 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)P175.CB) [> 4.1263 = 6.8771 < 8.9403] w=0.2133 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)D182.CB) [> 3.9399 = 6.5665 < 8.5364] w=0.2113 to align # Constraint # added constraint: constraint((T0378)R119.CB, (T0378)G149.CA) [> 4.6494 = 7.7490 < 10.0738] w=0.2083 to align # Constraint # added constraint: constraint((T0378)T48.CB, (T0378)E65.CB) [> 4.3803 = 7.3005 < 9.4907] w=0.2083 to align # Constraint # added constraint: constraint((T0378)E99.CB, (T0378)E196.CB) [> 3.6975 = 6.1625 < 8.0112] w=0.2075 to align # Constraint # added constraint: constraint((T0378)G208.CA, (T0378)S236.CB) [> 4.5658 = 7.6096 < 9.8925] w=0.2070 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)I223.CB) [> 4.2235 = 7.0392 < 9.1510] w=0.2070 to align # Constraint # added constraint: constraint((T0378)G183.CA, (T0378)P224.CB) [> 3.2106 = 5.3509 < 6.9562] w=0.2070 to align # Constraint # added constraint: constraint((T0378)D110.CB, (T0378)A136.CB) [> 3.9244 = 6.5407 < 8.5029] w=0.2064 to align # Constraint # added constraint: constraint((T0378)C42.CB, (T0378)V87.CB) [> 4.1879 = 6.9799 < 9.0738] w=0.2059 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)V144.CB) [> 3.8994 = 6.4991 < 8.4488] w=0.2050 to align # Constraint # added constraint: constraint((T0378)I223.CB, (T0378)V239.CB) [> 3.9229 = 6.5382 < 8.4997] w=0.2047 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)V176.CB) [> 4.4518 = 7.4197 < 9.6456] w=0.2030 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)G178.CA) [> 4.1335 = 6.8892 < 8.9560] w=0.2002 to align # Constraint # added constraint: constraint((T0378)L37.CB, (T0378)S56.CB) [> 3.7201 = 6.2001 < 8.0602] w=0.1989 to align # Constraint # added constraint: constraint((T0378)D122.CB, (T0378)Q172.CB) [> 3.3461 = 5.5769 < 7.2500] w=0.1989 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)L202.CB) [> 3.8717 = 6.4528 < 8.3887] w=0.1987 to align # Constraint # added constraint: constraint((T0378)G134.CA, (T0378)D182.CB) [> 3.5320 = 5.8867 < 7.6528] w=0.1974 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)T116.CB) [> 3.8147 = 6.3579 < 8.2653] w=0.1941 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)P224.CB) [> 4.4462 = 7.4104 < 9.6335] w=0.1890 to align # Constraint # added constraint: constraint((T0378)A26.CB, (T0378)I75.CB) [> 3.8881 = 6.4801 < 8.4241] w=0.1876 to align # Constraint # added constraint: constraint((T0378)K31.CB, (T0378)G149.CA) [> 3.8807 = 6.4678 < 8.4081] w=0.1876 to align # Constraint # added constraint: constraint((T0378)L32.CB, (T0378)V144.CB) [> 4.1150 = 6.8583 < 8.9157] w=0.1876 to align # Constraint # added constraint: constraint((T0378)L32.CB, (T0378)G149.CA) [> 2.8962 = 4.8270 < 6.2751] w=0.1876 to align # Constraint # added constraint: constraint((T0378)E35.CB, (T0378)G149.CA) [> 2.7307 = 4.5512 < 5.9165] w=0.1876 to align # Constraint # added constraint: constraint((T0378)F39.CB, (T0378)A152.CB) [> 2.9689 = 4.9482 < 6.4326] w=0.1876 to align # Constraint # added constraint: constraint((T0378)F39.CB, (T0378)R153.CB) [> 2.9778 = 4.9630 < 6.4520] w=0.1876 to align # Constraint # added constraint: constraint((T0378)T116.CB, (T0378)S147.CB) [> 4.5161 = 7.5269 < 9.7850] w=0.1876 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)E235.CB) [> 4.0280 = 6.7133 < 8.7273] w=0.1876 to align # Constraint # added constraint: constraint((T0378)T157.CB, (T0378)Y168.CB) [> 3.7860 = 6.3100 < 8.2029] w=0.1875 to align # Constraint # added constraint: constraint((T0378)P30.CB, (T0378)Q82.CB) [> 3.7845 = 6.3075 < 8.1997] w=0.1875 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)Y168.CB) [> 4.2864 = 7.1440 < 9.2872] w=0.1871 to align # Constraint # added constraint: constraint((T0378)L166.CB, (T0378)I217.CB) [> 3.8113 = 6.3522 < 8.2578] w=0.1868 to align # Constraint # added constraint: constraint((T0378)G134.CA, (T0378)G208.CA) [> 4.1986 = 6.9977 < 9.0970] w=0.1867 to align # Constraint # added constraint: constraint((T0378)Q23.CB, (T0378)L90.CB) [> 3.0564 = 5.0940 < 6.6222] w=0.1862 to align # Constraint # added constraint: constraint((T0378)P175.CB, (T0378)T195.CB) [> 4.0023 = 6.6705 < 8.6716] w=0.1853 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)A240.CB) [> 4.0903 = 6.8171 < 8.8623] w=0.1852 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)A244.CB) [> 4.3845 = 7.3075 < 9.4998] w=0.1852 to align # Constraint # added constraint: constraint((T0378)T48.CB, (T0378)Q82.CB) [> 4.5143 = 7.5239 < 9.7810] w=0.1851 to align # Constraint # added constraint: constraint((T0378)E28.CB, (T0378)Q78.CB) [> 4.0115 = 6.6858 < 8.6915] w=0.1851 to align # Constraint # added constraint: constraint((T0378)A26.CB, (T0378)S76.CB) [> 3.7050 = 6.1749 < 8.0274] w=0.1851 to align # Constraint # added constraint: constraint((T0378)F25.CB, (T0378)D89.CB) [> 2.8883 = 4.8138 < 6.2579] w=0.1851 to align # Constraint # added constraint: constraint((T0378)R11.CB, (T0378)I75.CB) [> 2.9550 = 4.9249 < 6.4024] w=0.1851 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)L202.CB) [> 4.2183 = 7.0305 < 9.1397] w=0.1851 to align # Constraint # added constraint: constraint((T0378)I199.CB, (T0378)L221.CB) [> 3.9380 = 6.5633 < 8.5323] w=0.1847 to align # Constraint # added constraint: constraint((T0378)I199.CB, (T0378)R220.CB) [> 3.2496 = 5.4160 < 7.0408] w=0.1842 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)L181.CB) [> 3.7391 = 6.2318 < 8.1013] w=0.1837 to align # Constraint # added constraint: constraint((T0378)I126.CB, (T0378)V176.CB) [> 3.3844 = 5.6407 < 7.3330] w=0.1832 to align # Constraint # added constraint: constraint((T0378)L200.CB, (T0378)R220.CB) [> 4.0357 = 6.7261 < 8.7439] w=0.1829 to align # Constraint # added constraint: constraint((T0378)A24.CB, (T0378)V87.CB) [> 3.4628 = 5.7713 < 7.5027] w=0.1813 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)A179.CB) [> 3.8910 = 6.4850 < 8.4304] w=0.1812 to align # Constraint # added constraint: constraint((T0378)A24.CB, (T0378)F88.CB) [> 3.8895 = 6.4825 < 8.4272] w=0.1812 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)A179.CB) [> 3.8523 = 6.4205 < 8.3466] w=0.1790 to align # Constraint # added constraint: constraint((T0378)V230.CB, (T0378)V239.CB) [> 4.1515 = 6.9191 < 8.9948] w=0.1735 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)Y177.CB) [> 3.8716 = 6.4527 < 8.3886] w=0.1718 to align # Constraint # added constraint: constraint((T0378)F25.CB, (T0378)L90.CB) [> 3.5762 = 5.9604 < 7.7485] w=0.1668 to align # Constraint # added constraint: constraint((T0378)F139.CB, (T0378)L151.CB) [> 3.6965 = 6.1609 < 8.0091] w=0.1668 to align # Constraint # added constraint: constraint((T0378)Y187.CB, (T0378)I245.CB) [> 4.3744 = 7.2907 < 9.4778] w=0.1668 to align # Constraint # added constraint: constraint((T0378)Y187.CB, (T0378)E249.CB) [> 3.3170 = 5.5283 < 7.1868] w=0.1668 to align # Constraint # added constraint: constraint((T0378)G125.CA, (T0378)C247.CB) [> 4.4224 = 7.3706 < 9.5819] w=0.1666 to align # Constraint # added constraint: constraint((T0378)R119.CB, (T0378)A240.CB) [> 4.5128 = 7.5213 < 9.7776] w=0.1665 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)A179.CB) [> 2.8606 = 4.7677 < 6.1981] w=0.1664 to align # Constraint # added constraint: constraint((T0378)P30.CB, (T0378)L52.CB) [> 3.5103 = 5.8504 < 7.6056] w=0.1662 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)I223.CB) [> 4.5168 = 7.5280 < 9.7864] w=0.1662 to align # Constraint # added constraint: constraint((T0378)S204.CB, (T0378)G232.CA) [> 4.3621 = 7.2702 < 9.4512] w=0.1651 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)L200.CB) [> 3.9769 = 6.6282 < 8.6166] w=0.1649 to align # Constraint # added constraint: constraint((T0378)T120.CB, (T0378)I241.CB) [> 3.6671 = 6.1118 < 7.9454] w=0.1649 to align # Constraint # added constraint: constraint((T0378)L202.CB, (T0378)S236.CB) [> 2.9589 = 4.9315 < 6.4110] w=0.1644 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)A179.CB) [> 4.2741 = 7.1235 < 9.2606] w=0.1643 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)Y177.CB) [> 3.8730 = 6.4549 < 8.3914] w=0.1643 to align # Constraint # added constraint: constraint((T0378)S69.CB, (T0378)P81.CB) [> 3.0032 = 5.0054 < 6.5070] w=0.1642 to align # Constraint # added constraint: constraint((T0378)L10.CB, (T0378)V46.CB) [> 3.5558 = 5.9263 < 7.7042] w=0.1642 to align # Constraint # added constraint: constraint((T0378)E205.CB, (T0378)E235.CB) [> 3.5835 = 5.9725 < 7.7642] w=0.1633 to align # Constraint # added constraint: constraint((T0378)E205.CB, (T0378)H233.CB) [> 2.6271 = 4.3786 < 5.6921] w=0.1633 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)A121.CB) [> 4.2823 = 7.1372 < 9.2784] w=0.1630 to align # Constraint # added constraint: constraint((T0378)T133.CB, (T0378)F180.CB) [> 3.2139 = 5.3565 < 6.9635] w=0.1588 to align # Constraint # added constraint: constraint((T0378)R127.CB, (T0378)V176.CB) [> 4.3158 = 7.1930 < 9.3510] w=0.1586 to align # Constraint # added constraint: constraint((T0378)L37.CB, (T0378)V55.CB) [> 3.9209 = 6.5349 < 8.4953] w=0.1582 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)I199.CB) [> 4.4896 = 7.4827 < 9.7276] w=0.1579 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)F180.CB) [> 3.6609 = 6.1016 < 7.9320] w=0.1575 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)F180.CB) [> 3.7471 = 6.2452 < 8.1187] w=0.1574 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)V201.CB) [> 3.7640 = 6.2733 < 8.1554] w=0.1572 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)L200.CB) [> 3.9319 = 6.5531 < 8.5191] w=0.1563 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)F180.CB) [> 3.4961 = 5.8269 < 7.5749] w=0.1547 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)A179.CB) [> 3.7581 = 6.2635 < 8.1425] w=0.1547 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)G203.CA) [> 3.8662 = 6.4436 < 8.3767] w=0.1517 to align # Constraint # added constraint: constraint((T0378)Q109.CB, (T0378)T133.CB) [> 3.5552 = 5.9254 < 7.7030] w=0.1511 to align # Constraint # added constraint: constraint((T0378)P30.CB, (T0378)M51.CB) [> 3.0096 = 5.0161 < 6.5209] w=0.1510 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)V230.CB) [> 4.5188 = 7.5314 < 9.7908] w=0.1487 to align # Constraint # added constraint: constraint((T0378)V138.CB, (T0378)P156.CB) [> 3.6989 = 6.1649 < 8.0143] w=0.1459 to align # Constraint # added constraint: constraint((T0378)V138.CB, (T0378)L151.CB) [> 3.6979 = 6.1632 < 8.0121] w=0.1459 to align # Constraint # added constraint: constraint((T0378)V98.CB, (T0378)H128.CB) [> 3.1530 = 5.2550 < 6.8315] w=0.1459 to align # Constraint # added constraint: constraint((T0378)V114.CB, (T0378)P156.CB) [> 4.5836 = 7.6393 < 9.9311] w=0.1453 to align # Constraint # added constraint: constraint((T0378)A26.CB, (T0378)V46.CB) [> 3.5370 = 5.8950 < 7.6635] w=0.1453 to align # Constraint # added constraint: constraint((T0378)L191.CB, (T0378)I223.CB) [> 4.2367 = 7.0612 < 9.1796] w=0.1452 to align # Constraint # added constraint: constraint((T0378)P175.CB, (T0378)L221.CB) [> 4.0718 = 6.7863 < 8.8222] w=0.1451 to align # Constraint # added constraint: constraint((T0378)L13.CB, (T0378)E22.CB) [> 4.2174 = 7.0290 < 9.1378] w=0.1450 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)I199.CB) [> 4.2158 = 7.0263 < 9.1342] w=0.1447 to align # Constraint # added constraint: constraint((T0378)G206.CA, (T0378)S236.CB) [> 3.9220 = 6.5367 < 8.4976] w=0.1444 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)T120.CB) [> 3.7835 = 6.3059 < 8.1976] w=0.1443 to align # Constraint # added constraint: constraint((T0378)A225.CB, (T0378)L246.CB) [> 3.7336 = 6.2226 < 8.0894] w=0.1439 to align # Constraint # added constraint: constraint((T0378)I223.CB, (T0378)T243.CB) [> 4.2326 = 7.0544 < 9.1707] w=0.1438 to align # Constraint # added constraint: constraint((T0378)T120.CB, (T0378)L237.CB) [> 3.8938 = 6.4896 < 8.4365] w=0.1437 to align # Constraint # added constraint: constraint((T0378)A121.CB, (T0378)V176.CB) [> 3.7713 = 6.2856 < 8.1713] w=0.1436 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)L200.CB) [> 3.2450 = 5.4084 < 7.0309] w=0.1434 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)A198.CB) [> 3.1755 = 5.2926 < 6.8803] w=0.1434 to align # Constraint # added constraint: constraint((T0378)L10.CB, (T0378)L66.CB) [> 3.7653 = 6.2755 < 8.1582] w=0.1434 to align # Constraint # added constraint: constraint((T0378)I7.CB, (T0378)L66.CB) [> 3.4269 = 5.7115 < 7.4250] w=0.1434 to align # Constraint # added constraint: constraint((T0378)L202.CB, (T0378)L221.CB) [> 3.7866 = 6.3109 < 8.2042] w=0.1424 to align # Constraint # added constraint: constraint((T0378)T48.CB, (T0378)D71.CB) [> 4.5479 = 7.5798 < 9.8537] w=0.1421 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)G203.CA) [> 4.6259 = 7.7098 < 10.0227] w=0.1401 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)T133.CB) [> 4.5052 = 7.5087 < 9.7614] w=0.1388 to align # Constraint # added constraint: constraint((T0378)G112.CA, (T0378)A136.CB) [> 3.5469 = 5.9115 < 7.6850] w=0.1385 to align # Constraint # added constraint: constraint((T0378)G34.CA, (T0378)L84.CB) [> 4.6407 = 7.7346 < 10.0550] w=0.1371 to align # Constraint # added constraint: constraint((T0378)T133.CB, (T0378)A179.CB) [> 4.2608 = 7.1013 < 9.2317] w=0.1354 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)A179.CB) [> 4.2811 = 7.1352 < 9.2757] w=0.1354 to align # Constraint # added constraint: constraint((T0378)G206.CA, (T0378)E235.CB) [> 3.0231 = 5.0384 < 6.5500] w=0.1347 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)A198.CB) [> 4.5948 = 7.6580 < 9.9554] w=0.1347 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)W130.CB) [> 3.2618 = 5.4364 < 7.0673] w=0.1342 to align # Constraint # added constraint: constraint((T0378)V63.CB, (T0378)A86.CB) [> 3.4293 = 5.7155 < 7.4301] w=0.1330 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)F180.CB) [> 3.7301 = 6.2169 < 8.0819] w=0.1319 to align # Constraint # added constraint: constraint((T0378)D110.CB, (T0378)K142.CB) [> 4.7313 = 7.8855 < 10.2511] w=0.1271 to align # Constraint # added constraint: constraint((T0378)G29.CA, (T0378)T80.CB) [> 4.4834 = 7.4724 < 9.7141] w=0.1251 to align # Constraint # added constraint: constraint((T0378)K31.CB, (T0378)M148.CB) [> 3.5369 = 5.8949 < 7.6634] w=0.1251 to align # Constraint # added constraint: constraint((T0378)L32.CB, (T0378)M148.CB) [> 4.3895 = 7.3157 < 9.5105] w=0.1251 to align # Constraint # added constraint: constraint((T0378)P38.CB, (T0378)R153.CB) [> 4.4247 = 7.3745 < 9.5868] w=0.1251 to align # Constraint # added constraint: constraint((T0378)E28.CB, (T0378)P81.CB) [> 3.2854 = 5.4756 < 7.1183] w=0.1251 to align # Constraint # added constraint: constraint((T0378)V27.CB, (T0378)V144.CB) [> 3.7955 = 6.3258 < 8.2235] w=0.1251 to align # Constraint # added constraint: constraint((T0378)F25.CB, (T0378)V144.CB) [> 4.4944 = 7.4907 < 9.7379] w=0.1251 to align # Constraint # added constraint: constraint((T0378)F25.CB, (T0378)F139.CB) [> 2.4969 = 4.1615 < 5.4100] w=0.1251 to align # Constraint # added constraint: constraint((T0378)L13.CB, (T0378)A26.CB) [> 3.2679 = 5.4466 < 7.0805] w=0.1251 to align # Constraint # added constraint: constraint((T0378)L10.CB, (T0378)V87.CB) [> 3.9539 = 6.5898 < 8.5668] w=0.1251 to align # Constraint # added constraint: constraint((T0378)L10.CB, (T0378)A26.CB) [> 3.9862 = 6.6437 < 8.6368] w=0.1251 to align # Constraint # added constraint: constraint((T0378)F194.CB, (T0378)L246.CB) [> 4.6964 = 7.8273 < 10.1754] w=0.1251 to align # Constraint # added constraint: constraint((T0378)R170.CB, (T0378)T218.CB) [> 4.3083 = 7.1806 < 9.3347] w=0.1251 to align # Constraint # added constraint: constraint((T0378)V114.CB, (T0378)A240.CB) [> 4.7319 = 7.8865 < 10.2525] w=0.1251 to align # Constraint # added constraint: constraint((T0378)N113.CB, (T0378)A146.CB) [> 4.5853 = 7.6422 < 9.9349] w=0.1251 to align # Constraint # added constraint: constraint((T0378)G112.CA, (T0378)Q145.CB) [> 4.6630 = 7.7716 < 10.1031] w=0.1251 to align # Constraint # added constraint: constraint((T0378)Q109.CB, (T0378)G134.CA) [> 4.3920 = 7.3200 < 9.5159] w=0.1251 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)L246.CB) [> 4.7219 = 7.8698 < 10.2308] w=0.1251 to align # Constraint # added constraint: constraint((T0378)V98.CB, (T0378)Q155.CB) [> 3.4351 = 5.7252 < 7.4427] w=0.1251 to align # Constraint # added constraint: constraint((T0378)Y40.CB, (T0378)A152.CB) [> 3.9731 = 6.6217 < 8.6083] w=0.1250 to align # Constraint # added constraint: constraint((T0378)L13.CB, (T0378)F25.CB) [> 3.5610 = 5.9350 < 7.7155] w=0.1250 to align # Constraint # added constraint: constraint((T0378)V144.CB, (T0378)R153.CB) [> 3.7333 = 6.2222 < 8.0889] w=0.1247 to align # Constraint # added constraint: constraint((T0378)W123.CB, (T0378)M148.CB) [> 2.8926 = 4.8210 < 6.2672] w=0.1247 to align # Constraint # added constraint: constraint((T0378)V27.CB, (T0378)L45.CB) [> 3.1021 = 5.1701 < 6.7211] w=0.1244 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)P224.CB) [> 4.4425 = 7.4041 < 9.6254] w=0.1244 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)V239.CB) [> 4.1058 = 6.8430 < 8.8959] w=0.1243 to align # Constraint # added constraint: constraint((T0378)L200.CB, (T0378)A240.CB) [> 4.3600 = 7.2666 < 9.4466] w=0.1243 to align # Constraint # added constraint: constraint((T0378)R14.CB, (T0378)A26.CB) [> 4.1735 = 6.9559 < 9.0426] w=0.1242 to align # Constraint # added constraint: constraint((T0378)L45.CB, (T0378)S56.CB) [> 3.5889 = 5.9815 < 7.7760] w=0.1241 to align # Constraint # added constraint: constraint((T0378)V33.CB, (T0378)V46.CB) [> 4.0666 = 6.7777 < 8.8110] w=0.1241 to align # Constraint # added constraint: constraint((T0378)Q6.CB, (T0378)V64.CB) [> 4.4187 = 7.3645 < 9.5739] w=0.1234 to align # Constraint # added constraint: constraint((T0378)L37.CB, (T0378)A61.CB) [> 3.8171 = 6.3619 < 8.2705] w=0.1232 to align # Constraint # added constraint: constraint((T0378)T116.CB, (T0378)L237.CB) [> 3.3426 = 5.5710 < 7.2424] w=0.1230 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)A198.CB) [> 3.6091 = 6.0152 < 7.8198] w=0.1229 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)I199.CB) [> 3.2065 = 5.3442 < 6.9475] w=0.1229 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)L181.CB) [> 3.7576 = 6.2626 < 8.1414] w=0.1229 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)A179.CB) [> 4.1670 = 6.9449 < 9.0284] w=0.1229 to align # Constraint # added constraint: constraint((T0378)Q78.CB, (T0378)A244.CB) [> 4.6585 = 7.7642 < 10.0935] w=0.1229 to align # Constraint # added constraint: constraint((T0378)S76.CB, (T0378)A244.CB) [> 3.2384 = 5.3973 < 7.0166] w=0.1229 to align # Constraint # added constraint: constraint((T0378)S76.CB, (T0378)I241.CB) [> 3.7860 = 6.3100 < 8.2030] w=0.1229 to align # Constraint # added constraint: constraint((T0378)S76.CB, (T0378)A240.CB) [> 2.9761 = 4.9601 < 6.4482] w=0.1229 to align # Constraint # added constraint: constraint((T0378)I75.CB, (T0378)I241.CB) [> 3.2308 = 5.3847 < 7.0001] w=0.1229 to align # Constraint # added constraint: constraint((T0378)R207.CB, (T0378)V239.CB) [> 3.3249 = 5.5414 < 7.2038] w=0.1229 to align # Constraint # added constraint: constraint((T0378)R207.CB, (T0378)E235.CB) [> 3.6102 = 6.0171 < 7.8222] w=0.1229 to align # Constraint # added constraint: constraint((T0378)L202.CB, (T0378)I223.CB) [> 3.4325 = 5.7209 < 7.4372] w=0.1229 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)V201.CB) [> 3.2254 = 5.3757 < 6.9884] w=0.1229 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)L200.CB) [> 3.3983 = 5.6638 < 7.3630] w=0.1229 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)I199.CB) [> 4.1525 = 6.9208 < 8.9971] w=0.1229 to align # Constraint # added constraint: constraint((T0378)E28.CB, (T0378)K73.CB) [> 4.3639 = 7.2732 < 9.4552] w=0.1226 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)S140.CB) [> 2.7939 = 4.6564 < 6.0534] w=0.1224 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)V176.CB) [> 3.7241 = 6.2067 < 8.0688] w=0.1208 to align # Constraint # added constraint: constraint((T0378)T133.CB, (T0378)G178.CA) [> 4.0539 = 6.7565 < 8.7834] w=0.1203 to align # Constraint # added constraint: constraint((T0378)C42.CB, (T0378)H59.CB) [> 4.0439 = 6.7398 < 8.7618] w=0.1169 to align # Constraint # added constraint: constraint((T0378)G34.CA, (T0378)V55.CB) [> 3.8014 = 6.3356 < 8.2362] w=0.1165 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)L200.CB) [> 4.3666 = 7.2777 < 9.4610] w=0.1153 to align # Constraint # added constraint: constraint((T0378)V64.CB, (T0378)M85.CB) [> 3.1716 = 5.2860 < 6.8717] w=0.1123 to align # Constraint # added constraint: constraint((T0378)V114.CB, (T0378)S135.CB) [> 3.7760 = 6.2933 < 8.1813] w=0.1063 to align # Constraint # added constraint: constraint((T0378)Y40.CB, (T0378)P91.CB) [> 4.0646 = 6.7743 < 8.8066] w=0.1042 to align # Constraint # added constraint: constraint((T0378)G29.CA, (T0378)P81.CB) [> 3.5046 = 5.8410 < 7.5933] w=0.1041 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)T243.CB) [> 4.4586 = 7.4310 < 9.6603] w=0.1040 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)E205.CB) [> 3.9743 = 6.6238 < 8.6110] w=0.1039 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)P224.CB) [> 4.5514 = 7.5856 < 9.8613] w=0.1038 to align # Constraint # added constraint: constraint((T0378)G29.CA, (T0378)L45.CB) [> 4.0564 = 6.7606 < 8.7888] w=0.1037 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L90.CB) [> 3.8521 = 6.4202 < 8.3462] w=0.1037 to align # Constraint # added constraint: constraint((T0378)S204.CB, (T0378)I223.CB) [> 3.8802 = 6.4671 < 8.4072] w=0.1024 to align # Constraint # added constraint: constraint((T0378)L221.CB, (T0378)T243.CB) [> 3.4469 = 5.7449 < 7.4684] w=0.1024 to align # Constraint # added constraint: constraint((T0378)T116.CB, (T0378)I241.CB) [> 4.3191 = 7.1985 < 9.3581] w=0.1023 to align # Constraint # added constraint: constraint((T0378)M36.CB, (T0378)L45.CB) [> 3.8880 = 6.4800 < 8.4240] w=0.1017 to align # Constraint # added constraint: constraint((T0378)G208.CA, (T0378)N238.CB) [> 2.4493 = 4.0822 < 5.3068] w=0.1014 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)A198.CB) [> 3.9554 = 6.5923 < 8.5700] w=0.1001 to align # Constraint # added constraint: constraint((T0378)T133.CB, (T0378)L181.CB) [> 3.5524 = 5.9206 < 7.6968] w=0.0960 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)G178.CA) [> 3.7773 = 6.2955 < 8.1841] w=0.0960 to align # Constraint # added constraint: constraint((T0378)L202.CB, (T0378)E235.CB) [> 3.4744 = 5.7907 < 7.5279] w=0.0947 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)V154.CB) [> 3.8771 = 6.4619 < 8.4004] w=0.0847 to align # Constraint # added constraint: constraint((T0378)A225.CB, (T0378)T234.CB) [> 3.4867 = 5.8112 < 7.5545] w=0.0834 to align # Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)L246.CB) [> 4.5211 = 7.5352 < 9.7957] w=0.0833 to align # Constraint # added constraint: constraint((T0378)T133.CB, (T0378)I209.CB) [> 4.2210 = 7.0350 < 9.1455] w=0.0831 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)E205.CB) [> 3.8046 = 6.3410 < 8.2433] w=0.0831 to align # Constraint # added constraint: constraint((T0378)V230.CB, (T0378)A242.CB) [> 3.2011 = 5.3351 < 6.9357] w=0.0830 to align # Constraint # added constraint: constraint((T0378)E28.CB, (T0378)V46.CB) [> 3.4002 = 5.6670 < 7.3670] w=0.0829 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)T243.CB) [> 3.5899 = 5.9832 < 7.7782] w=0.0829 to align # Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)V239.CB) [> 4.7209 = 7.8681 < 10.2286] w=0.0829 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)E235.CB) [> 3.7849 = 6.3082 < 8.2007] w=0.0829 to align # Constraint # added constraint: constraint((T0378)A198.CB, (T0378)T243.CB) [> 3.6250 = 6.0416 < 7.8541] w=0.0829 to align # Constraint # added constraint: constraint((T0378)L200.CB, (T0378)V239.CB) [> 3.5693 = 5.9488 < 7.7335] w=0.0829 to align # Constraint # added constraint: constraint((T0378)A225.CB, (T0378)N238.CB) [> 3.8679 = 6.4466 < 8.3805] w=0.0829 to align # Constraint # added constraint: constraint((T0378)S226.CB, (T0378)N238.CB) [> 4.7618 = 7.9363 < 10.3171] w=0.0829 to align # Constraint # added constraint: constraint((T0378)L52.CB, (T0378)P83.CB) [> 3.2447 = 5.4079 < 7.0302] w=0.0828 to align # Constraint # added constraint: constraint((T0378)M44.CB, (T0378)F88.CB) [> 4.2265 = 7.0442 < 9.1575] w=0.0828 to align # Constraint # added constraint: constraint((T0378)V27.CB, (T0378)V46.CB) [> 3.7465 = 6.2441 < 8.1174] w=0.0828 to align # Constraint # added constraint: constraint((T0378)A50.CB, (T0378)P83.CB) [> 3.4744 = 5.7907 < 7.5280] w=0.0825 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)F139.CB) [> 4.0197 = 6.6994 < 8.7093] w=0.0822 to align # Constraint # added constraint: constraint((T0378)M51.CB, (T0378)P83.CB) [> 3.2606 = 5.4343 < 7.0646] w=0.0822 to align # Constraint # added constraint: constraint((T0378)L32.CB, (T0378)I241.CB) [> 3.3081 = 5.5135 < 7.1675] w=0.0819 to align # Constraint # added constraint: constraint((T0378)G29.CA, (T0378)A242.CB) [> 4.2997 = 7.1662 < 9.3160] w=0.0819 to align # Constraint # added constraint: constraint((T0378)G29.CA, (T0378)N238.CB) [> 3.8803 = 6.4671 < 8.4073] w=0.0819 to align # Constraint # added constraint: constraint((T0378)Y18.CB, (T0378)I241.CB) [> 4.7460 = 7.9100 < 10.2830] w=0.0819 to align # Constraint # added constraint: constraint((T0378)Y18.CB, (T0378)L237.CB) [> 3.7443 = 6.2405 < 8.1126] w=0.0819 to align # Constraint # added constraint: constraint((T0378)Y18.CB, (T0378)V33.CB) [> 2.7953 = 4.6588 < 6.0565] w=0.0819 to align # Constraint # added constraint: constraint((T0378)Y18.CB, (T0378)L32.CB) [> 4.6429 = 7.7381 < 10.0595] w=0.0819 to align # Constraint # added constraint: constraint((T0378)I7.CB, (T0378)L52.CB) [> 4.4777 = 7.4628 < 9.7017] w=0.0819 to align # Constraint # added constraint: constraint((T0378)G203.CA, (T0378)I223.CB) [> 3.5036 = 5.8393 < 7.5911] w=0.0819 to align # Constraint # added constraint: constraint((T0378)F39.CB, (T0378)M51.CB) [> 3.8426 = 6.4042 < 8.3255] w=0.0819 to align # Constraint # added constraint: constraint((T0378)L10.CB, (T0378)V64.CB) [> 3.2053 = 5.3421 < 6.9447] w=0.0817 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)Y177.CB) [> 4.2555 = 7.0924 < 9.2202] w=0.0809 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)L200.CB) [> 3.5867 = 5.9778 < 7.7711] w=0.0799 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)R127.CB) [> 4.5175 = 7.5291 < 9.7879] w=0.0792 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)D106.CB) [> 3.0787 = 5.1312 < 6.6705] w=0.0779 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)P175.CB) [> 4.5062 = 7.5104 < 9.7635] w=0.0774 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)F180.CB) [> 4.3215 = 7.2025 < 9.3632] w=0.0773 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)W130.CB) [> 3.7125 = 6.1874 < 8.0437] w=0.0772 to align # Constraint # added constraint: constraint((T0378)P224.CB, (T0378)H233.CB) [> 3.9074 = 6.5124 < 8.4661] w=0.0764 to align # Constraint # added constraint: constraint((T0378)T133.CB, (T0378)S204.CB) [> 3.3966 = 5.6610 < 7.3594] w=0.0742 to align # Constraint # added constraint: constraint((T0378)T133.CB, (T0378)G203.CA) [> 3.7911 = 6.3186 < 8.2141] w=0.0742 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)G203.CA) [> 4.3647 = 7.2744 < 9.4568] w=0.0742 to align # Constraint # added constraint: constraint((T0378)V63.CB, (T0378)M85.CB) [> 4.3445 = 7.2409 < 9.4131] w=0.0706 to align # Constraint # added constraint: constraint((T0378)M36.CB, (T0378)G149.CA) [> 4.2527 = 7.0879 < 9.2142] w=0.0625 to align # Constraint # added constraint: constraint((T0378)V33.CB, (T0378)M51.CB) [> 3.5566 = 5.9276 < 7.7059] w=0.0625 to align # Constraint # added constraint: constraint((T0378)I7.CB, (T0378)R74.CB) [> 3.8118 = 6.3530 < 8.2589] w=0.0625 to align # Constraint # added constraint: constraint((T0378)V27.CB, (T0378)V87.CB) [> 4.6523 = 7.7539 < 10.0801] w=0.0625 to align # Constraint # added constraint: constraint((T0378)V27.CB, (T0378)A152.CB) [> 4.6190 = 7.6983 < 10.0078] w=0.0625 to align # Constraint # added constraint: constraint((T0378)L32.CB, (T0378)Q145.CB) [> 4.2922 = 7.1537 < 9.2998] w=0.0625 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)R207.CB) [> 3.3749 = 5.6248 < 7.3123] w=0.0625 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)R207.CB) [> 2.6833 = 4.4722 < 5.8138] w=0.0625 to align # Constraint # added constraint: constraint((T0378)V201.CB, (T0378)A214.CB) [> 4.5882 = 7.6470 < 9.9411] w=0.0625 to align # Constraint # added constraint: constraint((T0378)E205.CB, (T0378)L237.CB) [> 3.8549 = 6.4249 < 8.3523] w=0.0625 to align # Constraint # added constraint: constraint((T0378)E205.CB, (T0378)A242.CB) [> 4.4849 = 7.4748 < 9.7173] w=0.0625 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)R251.CB) [> 4.6278 = 7.7130 < 10.0269] w=0.0625 to align # Constraint # added constraint: constraint((T0378)T116.CB, (T0378)N238.CB) [> 4.2132 = 7.0219 < 9.1285] w=0.0625 to align # Constraint # added constraint: constraint((T0378)L118.CB, (T0378)M148.CB) [> 3.8111 = 6.3519 < 8.2574] w=0.0625 to align # Constraint # added constraint: constraint((T0378)A86.CB, (T0378)R119.CB) [> 4.2973 = 7.1622 < 9.3109] w=0.0622 to align # Constraint # added constraint: constraint((T0378)F88.CB, (T0378)V97.CB) [> 3.0856 = 5.1427 < 6.6856] w=0.0622 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)S229.CB) [> 4.7639 = 7.9398 < 10.3218] w=0.0620 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)A198.CB) [> 3.8855 = 6.4758 < 8.4185] w=0.0617 to align # Constraint # added constraint: constraint((T0378)L2.CB, (T0378)P67.CB) [> 4.4654 = 7.4423 < 9.6750] w=0.0617 to align # Constraint # added constraint: constraint((T0378)Y40.CB, (T0378)H59.CB) [> 3.2184 = 5.3640 < 6.9732] w=0.0616 to align # Constraint # added constraint: constraint((T0378)S204.CB, (T0378)V230.CB) [> 2.8110 = 4.6849 < 6.0904] w=0.0614 to align # Constraint # added constraint: constraint((T0378)E205.CB, (T0378)I223.CB) [> 3.1699 = 5.2831 < 6.8680] w=0.0614 to align # Constraint # added constraint: constraint((T0378)A26.CB, (T0378)D89.CB) [> 4.7326 = 7.8876 < 10.2539] w=0.0614 to align # Constraint # added constraint: constraint((T0378)V114.CB, (T0378)L237.CB) [> 4.7654 = 7.9423 < 10.3250] w=0.0609 to align # Constraint # added constraint: constraint((T0378)E205.CB, (T0378)T234.CB) [> 3.5636 = 5.9393 < 7.7210] w=0.0609 to align # Constraint # added constraint: constraint((T0378)A225.CB, (T0378)C247.CB) [> 4.5648 = 7.6079 < 9.8903] w=0.0609 to align # Constraint # added constraint: constraint((T0378)R207.CB, (T0378)L237.CB) [> 3.7509 = 6.2515 < 8.1270] w=0.0605 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L105.CB) [> 4.5553 = 7.5922 < 9.8699] w=0.0594 to align # Constraint # added constraint: constraint((T0378)R153.CB, (T0378)P175.CB) [> 3.6382 = 6.0636 < 7.8827] w=0.0591 to align # Constraint # added constraint: constraint((T0378)R153.CB, (T0378)V176.CB) [> 4.6712 = 7.7853 < 10.1208] w=0.0591 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)Y177.CB) [> 4.7985 = 7.9975 < 10.3968] w=0.0586 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L104.CB) [> 3.1175 = 5.1958 < 6.7546] w=0.0585 to align # Constraint # added constraint: constraint((T0378)L37.CB, (T0378)L101.CB) [> 4.0011 = 6.6686 < 8.6691] w=0.0585 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)Y177.CB) [> 4.5575 = 7.5958 < 9.8745] w=0.0584 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)S56.CB) [> 4.0003 = 6.6672 < 8.6673] w=0.0563 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)I223.CB) [> 3.7656 = 6.2761 < 8.1589] w=0.0529 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)L221.CB) [> 3.2644 = 5.4407 < 7.0729] w=0.0529 to align # Constraint # added constraint: constraint((T0378)V63.CB, (T0378)V87.CB) [> 4.5456 = 7.5760 < 9.8488] w=0.0500 to align # Constraint # added constraint: constraint((T0378)G47.CA, (T0378)Q82.CB) [> 4.7692 = 7.9487 < 10.3333] w=0.0417 to align # Constraint # added constraint: constraint((T0378)V27.CB, (T0378)L84.CB) [> 3.3145 = 5.5242 < 7.1815] w=0.0416 to align # Constraint # added constraint: constraint((T0378)A49.CB, (T0378)Q82.CB) [> 4.7874 = 7.9789 < 10.3726] w=0.0416 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)V239.CB) [> 4.0749 = 6.7915 < 8.8289] w=0.0416 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)L246.CB) [> 4.3591 = 7.2652 < 9.4447] w=0.0416 to align # Constraint # added constraint: constraint((T0378)G203.CA, (T0378)A242.CB) [> 4.6585 = 7.7643 < 10.0935] w=0.0416 to align # Constraint # added constraint: constraint((T0378)A225.CB, (T0378)I245.CB) [> 3.3988 = 5.6646 < 7.3640] w=0.0416 to align # Constraint # added constraint: constraint((T0378)V230.CB, (T0378)I245.CB) [> 4.1194 = 6.8657 < 8.9254] w=0.0416 to align # Constraint # added constraint: constraint((T0378)K231.CB, (T0378)A240.CB) [> 2.9897 = 4.9828 < 6.4776] w=0.0416 to align # Constraint # added constraint: constraint((T0378)K231.CB, (T0378)I241.CB) [> 2.6593 = 4.4321 < 5.7618] w=0.0416 to align # Constraint # added constraint: constraint((T0378)V27.CB, (T0378)G47.CA) [> 3.9078 = 6.5130 < 8.4669] w=0.0416 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)F180.CB) [> 4.3120 = 7.1867 < 9.3428] w=0.0415 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)G178.CA) [> 4.1715 = 6.9525 < 9.0383] w=0.0415 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)S248.CB) [> 4.5650 = 7.6083 < 9.8909] w=0.0414 to align # Constraint # added constraint: constraint((T0378)A198.CB, (T0378)C247.CB) [> 3.6342 = 6.0571 < 7.8742] w=0.0414 to align # Constraint # added constraint: constraint((T0378)G125.CA, (T0378)S248.CB) [> 4.1098 = 6.8497 < 8.9046] w=0.0414 to align # Constraint # added constraint: constraint((T0378)Y177.CB, (T0378)T243.CB) [> 4.7090 = 7.8483 < 10.2028] w=0.0414 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)I223.CB) [> 4.4808 = 7.4679 < 9.7083] w=0.0412 to align # Constraint # added constraint: constraint((T0378)D164.CB, (T0378)R220.CB) [> 4.7615 = 7.9358 < 10.3165] w=0.0412 to align # Constraint # added constraint: constraint((T0378)M36.CB, (T0378)L237.CB) [> 3.7625 = 6.2708 < 8.1520] w=0.0410 to align # Constraint # added constraint: constraint((T0378)Y40.CB, (T0378)T234.CB) [> 4.4464 = 7.4106 < 9.6338] w=0.0410 to align # Constraint # added constraint: constraint((T0378)E28.CB, (T0378)I241.CB) [> 2.8276 = 4.7127 < 6.1265] w=0.0410 to align # Constraint # added constraint: constraint((T0378)L32.CB, (T0378)A49.CB) [> 4.7536 = 7.9227 < 10.2995] w=0.0410 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)T195.CB) [> 2.6842 = 4.4737 < 5.8158] w=0.0410 to align # Constraint # added constraint: constraint((T0378)R41.CB, (T0378)I241.CB) [> 2.7627 = 4.6045 < 5.9858] w=0.0410 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)S140.CB) [> 3.0087 = 5.0145 < 6.5188] w=0.0406 to align # Constraint # added constraint: constraint((T0378)A49.CB, (T0378)L105.CB) [> 4.5975 = 7.6625 < 9.9613] w=0.0391 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)L181.CB) [> 3.6339 = 6.0566 < 7.8735] w=0.0357 to align # Constraint # added constraint: constraint((T0378)H233.CB, (T0378)I245.CB) [> 3.9786 = 6.6310 < 8.6203] w=0.0354 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L101.CB) [> 3.6744 = 6.1240 < 7.9612] w=0.0351 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)T102.CB) [> 3.4399 = 5.7331 < 7.4531] w=0.0351 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L103.CB) [> 3.6218 = 6.0363 < 7.8471] w=0.0351 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)L131.CB) [> 4.6721 = 7.7868 < 10.1229] w=0.0346 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)L221.CB) [> 4.3351 = 7.2251 < 9.3926] w=0.0324 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)L221.CB) [> 3.6731 = 6.1218 < 7.9583] w=0.0324 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)V201.CB) [> 3.0134 = 5.0224 < 6.5291] w=0.0324 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)L202.CB) [> 4.0879 = 6.8132 < 8.8572] w=0.0324 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)L202.CB) [> 2.8478 = 4.7463 < 6.1701] w=0.0324 to align # Constraint # added constraint: constraint((T0378)A150.CB, (T0378)S248.CB) [> 3.0925 = 5.1542 < 6.7005] w=0.0312 to align # Constraint # added constraint: constraint((T0378)V63.CB, (T0378)D106.CB) [> 4.6116 = 7.6861 < 9.9919] w=0.0292 to align # Constraint # added constraint: constraint((T0378)F9.CB, (T0378)C247.CB) [> 4.5163 = 7.5271 < 9.7852] w=0.0236 to align # Constraint # added constraint: constraint((T0378)F9.CB, (T0378)A244.CB) [> 2.7749 = 4.6249 < 6.0123] w=0.0236 to align # Constraint # added constraint: constraint((T0378)L2.CB, (T0378)T243.CB) [> 4.2443 = 7.0738 < 9.1960] w=0.0236 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)G178.CA) [> 4.7626 = 7.9377 < 10.3189] w=0.0228 to align # Constraint # added constraint: constraint((T0378)L2.CB, (T0378)R74.CB) [> 2.9189 = 4.8649 < 6.3243] w=0.0208 to align # Constraint # added constraint: constraint((T0378)I7.CB, (T0378)L84.CB) [> 2.7518 = 4.5864 < 5.9623] w=0.0208 to align # Constraint # added constraint: constraint((T0378)Q6.CB, (T0378)L84.CB) [> 3.6436 = 6.0727 < 7.8945] w=0.0208 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)I245.CB) [> 4.7568 = 7.9280 < 10.3064] w=0.0208 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)I245.CB) [> 4.7981 = 7.9969 < 10.3959] w=0.0208 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)L246.CB) [> 3.5029 = 5.8381 < 7.5895] w=0.0208 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)G203.CA) [> 4.5018 = 7.5030 < 9.7539] w=0.0207 to align # Constraint # added constraint: constraint((T0378)V98.CB, (T0378)A244.CB) [> 3.5141 = 5.8569 < 7.6139] w=0.0207 to align # Constraint # added constraint: constraint((T0378)I75.CB, (T0378)L84.CB) [> 4.2166 = 7.0277 < 9.1360] w=0.0207 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)I199.CB) [> 4.2573 = 7.0956 < 9.2242] w=0.0207 to align # Constraint # added constraint: constraint((T0378)L191.CB, (T0378)W250.CB) [> 4.4091 = 7.3485 < 9.5530] w=0.0207 to align # Constraint # added constraint: constraint((T0378)T79.CB, (T0378)T234.CB) [> 3.5596 = 5.9327 < 7.7125] w=0.0206 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)E205.CB) [> 2.9811 = 4.9684 < 6.4590] w=0.0206 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)P175.CB) [> 4.7737 = 7.9562 < 10.3431] w=0.0206 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)I223.CB) [> 2.8041 = 4.6736 < 6.0757] w=0.0206 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)I223.CB) [> 4.5293 = 7.5488 < 9.8134] w=0.0206 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)L221.CB) [> 4.3274 = 7.2123 < 9.3760] w=0.0206 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)L221.CB) [> 2.5122 = 4.1870 < 5.4430] w=0.0206 to align # Constraint # added constraint: constraint((T0378)W130.CB, (T0378)L181.CB) [> 3.9114 = 6.5189 < 8.4746] w=0.0206 to align # Constraint # added constraint: constraint((T0378)R127.CB, (T0378)I199.CB) [> 3.5998 = 5.9997 < 7.7996] w=0.0206 to align # Constraint # added constraint: constraint((T0378)R127.CB, (T0378)A198.CB) [> 3.3743 = 5.6238 < 7.3109] w=0.0206 to align # Constraint # added constraint: constraint((T0378)R127.CB, (T0378)G178.CA) [> 3.4326 = 5.7210 < 7.4372] w=0.0206 to align # Constraint # added constraint: constraint((T0378)R127.CB, (T0378)Y177.CB) [> 3.3499 = 5.5832 < 7.2582] w=0.0206 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)I223.CB) [> 4.6570 = 7.7616 < 10.0901] w=0.0206 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)R127.CB) [> 4.5623 = 7.6038 < 9.8850] w=0.0206 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)E205.CB) [> 4.1926 = 6.9876 < 9.0839] w=0.0206 to align # Constraint # added constraint: constraint((T0378)V201.CB, (T0378)I223.CB) [> 3.5265 = 5.8776 < 7.6408] w=0.0205 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)V239.CB) [> 3.8676 = 6.4461 < 8.3799] w=0.0203 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)T243.CB) [> 3.3873 = 5.6455 < 7.3391] w=0.0203 to align # Constraint # added constraint: constraint((T0378)V87.CB, (T0378)L101.CB) [> 4.4916 = 7.4861 < 9.7319] w=0.0203 to align # Constraint # added constraint: constraint((T0378)V87.CB, (T0378)R127.CB) [> 4.7682 = 7.9470 < 10.3311] w=0.0203 to align # Constraint # added constraint: constraint((T0378)P175.CB, (T0378)L200.CB) [> 2.8966 = 4.8277 < 6.2759] w=0.0203 to align # Constraint # added constraint: constraint((T0378)M148.CB, (T0378)L159.CB) [> 4.5322 = 7.5537 < 9.8198] w=0.0203 to align # Constraint # added constraint: constraint((T0378)G206.CA, (T0378)L221.CB) [> 3.7680 = 6.2801 < 8.1641] w=0.0195 to align # Constraint # added constraint: constraint((T0378)G206.CA, (T0378)I223.CB) [> 3.9133 = 6.5222 < 8.4789] w=0.0195 to align # Constraint # added constraint: constraint((T0378)I217.CB, (T0378)I245.CB) [> 2.7091 = 4.5152 < 5.8698] w=0.0195 to align # Constraint # added constraint: constraint((T0378)I217.CB, (T0378)S248.CB) [> 4.7053 = 7.8422 < 10.1949] w=0.0195 to align # Constraint # added constraint: constraint((T0378)G203.CA, (T0378)L221.CB) [> 4.5366 = 7.5610 < 9.8293] w=0.0195 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)W130.CB) [> 4.3688 = 7.2814 < 9.4658] w=0.0194 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)G107.CA) [> 3.3888 = 5.6480 < 7.3424] w=0.0194 to align # Constraint # added constraint: constraint((T0378)I199.CB, (T0378)T243.CB) [> 3.9793 = 6.6321 < 8.6218] w=0.0194 to align # Constraint # added constraint: constraint((T0378)I199.CB, (T0378)I223.CB) [> 2.5519 = 4.2531 < 5.5290] w=0.0194 to align # Constraint # added constraint: constraint((T0378)A198.CB, (T0378)I223.CB) [> 3.9137 = 6.5228 < 8.4797] w=0.0194 to align # Constraint # added constraint: constraint((T0378)P197.CB, (T0378)W250.CB) [> 4.7916 = 7.9859 < 10.3817] w=0.0194 to align # Constraint # added constraint: constraint((T0378)T234.CB, (T0378)T243.CB) [> 4.0873 = 6.8121 < 8.8557] w=0.0194 to align # Constraint # added constraint: constraint((T0378)V201.CB, (T0378)T243.CB) [> 3.1932 = 5.3220 < 6.9186] w=0.0194 to align # Constraint # added constraint: constraint((T0378)L200.CB, (T0378)I223.CB) [> 4.1186 = 6.8643 < 8.9236] w=0.0194 to align # Constraint # added constraint: constraint((T0378)L151.CB, (T0378)S248.CB) [> 3.4626 = 5.7710 < 7.5023] w=0.0194 to align # Constraint # added constraint: constraint((T0378)A150.CB, (T0378)E249.CB) [> 3.0478 = 5.0796 < 6.6035] w=0.0194 to align # Constraint # added constraint: constraint((T0378)A150.CB, (T0378)I245.CB) [> 4.6334 = 7.7223 < 10.0390] w=0.0194 to align # Constraint # added constraint: constraint((T0378)G178.CA, (T0378)T243.CB) [> 4.4655 = 7.4424 < 9.6752] w=0.0194 to align # Constraint # added constraint: constraint((T0378)V176.CB, (T0378)S248.CB) [> 4.2784 = 7.1306 < 9.2698] w=0.0194 to align # Constraint # added constraint: constraint((T0378)V46.CB, (T0378)L131.CB) [> 4.6047 = 7.6746 < 9.9769] w=0.0151 to align # Constraint # added constraint: constraint((T0378)L181.CB, (T0378)S204.CB) [> 2.4490 = 4.0817 < 5.3062] w=0.0151 to align # Constraint # added constraint: constraint((T0378)F180.CB, (T0378)S204.CB) [> 2.9851 = 4.9752 < 6.4678] w=0.0151 to align # Constraint # added constraint: constraint((T0378)A179.CB, (T0378)S204.CB) [> 4.5461 = 7.5768 < 9.8499] w=0.0151 to align # Constraint # added constraint: constraint((T0378)L104.CB, (T0378)T133.CB) [> 3.0581 = 5.0968 < 6.6259] w=0.0151 to align # Constraint # added constraint: constraint((T0378)L101.CB, (T0378)L131.CB) [> 4.6071 = 7.6785 < 9.9821] w=0.0151 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)L131.CB) [> 3.2300 = 5.3833 < 6.9983] w=0.0151 to align # Constraint # added constraint: constraint((T0378)L103.CB, (T0378)T133.CB) [> 4.7598 = 7.9330 < 10.3130] w=0.0151 to align # Constraint # added constraint: constraint((T0378)V55.CB, (T0378)R251.CB) [> 3.3448 = 5.5746 < 7.2470] w=0.0118 to align # Constraint # added constraint: constraint((T0378)T165.CB, (T0378)E249.CB) [> 3.3053 = 5.5088 < 7.1615] w=0.0118 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)L246.CB) [> 4.1490 = 6.9150 < 8.9895] w=0.0118 to align # Constraint # added constraint: constraint((T0378)T102.CB, (T0378)V201.CB) [> 4.0648 = 6.7748 < 8.8072] w=0.0118 to align # Constraint # added constraint: constraint((T0378)T133.CB, (T0378)V239.CB) [> 2.6672 = 4.4453 < 5.7788] w=0.0118 to align # Constraint # added constraint: constraint((T0378)T133.CB, (T0378)G206.CA) [> 4.3332 = 7.2220 < 9.3886] w=0.0118 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)T243.CB) [> 3.2862 = 5.4771 < 7.1202] w=0.0118 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)V239.CB) [> 3.1669 = 5.2782 < 6.8617] w=0.0118 to align # Constraint # added constraint: constraint((T0378)L131.CB, (T0378)V201.CB) [> 4.7488 = 7.9146 < 10.2890] w=0.0118 to align # Constraint # added constraint: constraint((T0378)G107.CA, (T0378)I223.CB) [> 4.5220 = 7.5367 < 9.7978] w=0.0118 to align # Constraint # added constraint: constraint((T0378)D106.CB, (T0378)L221.CB) [> 4.5193 = 7.5322 < 9.7919] w=0.0118 to align # Constraint # added constraint: constraint((T0378)L105.CB, (T0378)V176.CB) [> 4.2068 = 7.0113 < 9.1147] w=0.0021 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0378/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0378/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 244 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 502, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 504, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 506, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 508, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 518, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 520, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 522, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 524, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 534, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 536, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 250 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 250 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 235 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 502, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 504, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 506, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 508, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 518, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 520, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 522, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 524, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 534, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz Skipped atom 536, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL4.pdb.gz # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0378)T157.O and (T0378)P158.N only 0.000 apart, marking (T0378)P158.N as missing # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0378)G100.O and (T0378)L101.N only 0.000 apart, marking (T0378)L101.N as missing WARNING: atoms too close: (T0378)G115.O and (T0378)T116.N only 0.000 apart, marking (T0378)T116.N as missing WARNING: atoms too close: (T0378)T157.O and (T0378)P158.N only 0.000 apart, marking (T0378)P158.N as missing WARNING: atoms too close: (T0378)F180.O and (T0378)L181.N only 0.000 apart, marking (T0378)L181.N as missing WARNING: atoms too close: (T0378)F194.O and (T0378)T195.N only 0.000 apart, marking (T0378)T195.N as missing # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 251 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0378)A189.O and (T0378)P190.N only 0.000 apart, marking (T0378)P190.N as missing WARNING: atoms too close: (T0378)T243.O and (T0378)A244.N only 0.000 apart, marking (T0378)A244.N as missing # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 254 in servers/nFOLD_TS3.pdb.gz # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 254 in servers/nFOLD_TS4.pdb.gz # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 254 in servers/nFOLD_TS5.pdb.gz # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0378)V64.N and (T0378)E65.N only 0.000 apart, marking (T0378)E65.N as missing WARNING: atoms too close: (T0378)V64.CA and (T0378)E65.CA only 0.000 apart, marking (T0378)E65.CA as missing WARNING: atoms too close: (T0378)V64.CB and (T0378)E65.CB only 0.000 apart, marking (T0378)E65.CB as missing WARNING: atoms too close: (T0378)V64.CG1 and (T0378)E65.CG only 0.000 apart, marking (T0378)E65.CG as missing WARNING: atoms too close: (T0378)V64.O and (T0378)E65.O only 0.000 apart, marking (T0378)E65.O as missing WARNING: atoms too close: (T0378)V64.C and (T0378)E65.C only 0.000 apart, marking (T0378)E65.C as missing WARNING: atoms too close: (T0378)E65.N and (T0378)L66.N only 0.000 apart, marking (T0378)E65.N as missing WARNING: atoms too close: (T0378)V64.N and (T0378)L66.N only 0.000 apart, marking (T0378)L66.N as missing WARNING: atoms too close: (T0378)E65.CA and (T0378)L66.CA only 0.000 apart, marking (T0378)L66.CA as missing WARNING: atoms too close: (T0378)V64.CA and (T0378)L66.CA only 0.000 apart, marking (T0378)L66.CA as missing WARNING: atoms too close: (T0378)E65.CB and (T0378)L66.CB only 0.000 apart, marking (T0378)L66.CB as missing WARNING: atoms too close: (T0378)V64.CB and (T0378)L66.CB only 0.000 apart, marking (T0378)L66.CB as missing WARNING: atoms too close: (T0378)E65.CG and (T0378)L66.CG only 0.000 apart, marking (T0378)L66.CG as missing WARNING: atoms too close: (T0378)V64.CG1 and (T0378)L66.CG only 0.000 apart, marking (T0378)L66.CG as missing WARNING: atoms too close: (T0378)E65.CD and (T0378)L66.CD1 only 0.000 apart, marking (T0378)L66.CD1 as missing WARNING: atoms too close: (T0378)E65.O and (T0378)L66.O only 0.000 apart, marking (T0378)L66.O as missing WARNING: atoms too close: (T0378)V64.O and (T0378)L66.O only 0.000 apart, marking (T0378)L66.O as missing WARNING: atoms too close: (T0378)E65.C and (T0378)L66.C only 0.000 apart, marking (T0378)L66.C as missing WARNING: atoms too close: (T0378)V64.C and (T0378)L66.C only 0.000 apart, marking (T0378)L66.C as missing WARNING: atoms too close: (T0378)L66.N and (T0378)P67.N only 0.000 apart, marking (T0378)L66.N as missing WARNING: atoms too close: (T0378)E65.N and (T0378)P67.N only 0.000 apart, marking (T0378)E65.N as missing WARNING: atoms too close: (T0378)V64.N and (T0378)P67.N only 0.000 apart, marking (T0378)P67.N as missing WARNING: atoms too close: (T0378)L66.CA and (T0378)P67.CA only 0.000 apart, marking (T0378)P67.CA as missing WARNING: atoms too close: (T0378)E65.CA and (T0378)P67.CA only 0.000 apart, marking (T0378)P67.CA as missing WARNING: atoms too close: (T0378)V64.CA and (T0378)P67.CA only 0.000 apart, marking (T0378)P67.CA as missing WARNING: atoms too close: (T0378)L66.CB and (T0378)P67.CB only 0.000 apart, marking (T0378)P67.CB as missing WARNING: atoms too close: (T0378)E65.CB and (T0378)P67.CB only 0.000 apart, marking (T0378)P67.CB as missing WARNING: atoms too close: (T0378)V64.CB and (T0378)P67.CB only 0.000 apart, marking (T0378)P67.CB as missing WARNING: atoms too close: (T0378)L66.O and (T0378)P67.O only 0.000 apart, marking (T0378)P67.O as missing WARNING: atoms too close: (T0378)E65.O and (T0378)P67.O only 0.000 apart, marking (T0378)P67.O as missing WARNING: atoms too close: (T0378)V64.O and (T0378)P67.O only 0.000 apart, marking (T0378)P67.O as missing WARNING: atoms too close: (T0378)L66.C and (T0378)P67.C only 0.000 apart, marking (T0378)P67.C as missing WARNING: atoms too close: (T0378)E65.C and (T0378)P67.C only 0.000 apart, marking (T0378)P67.C as missing WARNING: atoms too close: (T0378)V64.C and (T0378)P67.C only 0.000 apart, marking (T0378)P67.C as missing WARNING: atoms too close: (T0378)P67.N and (T0378)E68.N only 0.000 apart, marking (T0378)P67.N as missing WARNING: atoms too close: (T0378)L66.N and (T0378)E68.N only 0.000 apart, marking (T0378)L66.N as missing WARNING: atoms too close: (T0378)E65.N and (T0378)E68.N only 0.000 apart, marking (T0378)E65.N as missing WARNING: atoms too close: (T0378)V64.N and (T0378)E68.N only 0.000 apart, marking (T0378)E68.N as missing WARNING: atoms too close: (T0378)P67.CA and (T0378)E68.CA only 0.000 apart, marking (T0378)E68.CA as missing WARNING: atoms too close: (T0378)L66.CA and (T0378)E68.CA only 0.000 apart, marking (T0378)E68.CA as missing WARNING: atoms too close: (T0378)E65.CA and (T0378)E68.CA only 0.000 apart, marking (T0378)E68.CA as missing WARNING: atoms too close: (T0378)V64.CA and (T0378)E68.CA only 0.000 apart, marking (T0378)E68.CA as missing WARNING: atoms too close: (T0378)P67.CB and (T0378)E68.CB only 0.000 apart, marking (T0378)E68.CB as missing WARNING: atoms too close: (T0378)L66.CB and (T0378)E68.CB only 0.000 apart, marking (T0378)E68.CB as missing WARNING: atoms too close: (T0378)E65.CB and (T0378)E68.CB only 0.000 apart, marking (T0378)E68.CB as missing WARNING: atoms too close: (T0378)V64.CB and (T0378)E68.CB only 0.000 apart, marking (T0378)E68.CB as missing WARNING: atoms too close: (T0378)L66.CG and (T0378)E68.CG only 0.000 apart, marking (T0378)E68.CG as missing WARNING: atoms too close: (T0378)E65.CG and (T0378)E68.CG only 0.000 apart, marking (T0378)E68.CG as missing WARNING: atoms too close: (T0378)V64.CG1 and (T0378)E68.CG only 0.000 apart, marking (T0378)E68.CG as missing WARNING: atoms too close: (T0378)L66.CD1 and (T0378)E68.CD only 0.000 apart, marking (T0378)E68.CD as missing WARNING: atoms too close: (T0378)E65.CD and (T0378)E68.CD only 0.000 apart, marking (T0378)E68.CD as missing WARNING: atoms too close: (T0378)P67.O and (T0378)E68.O only 0.000 apart, marking (T0378)E68.O as missing WARNING: atoms too close: (T0378)L66.O and (T0378)E68.O only 0.000 apart, marking (T0378)E68.O as missing WARNING: atoms too close: (T0378)E65.O and (T0378)E68.O only 0.000 apart, marking (T0378)E68.O as missing WARNING: atoms too close: (T0378)V64.O and (T0378)E68.O only 0.000 apart, marking (T0378)E68.O as missing WARNING: atoms too close: (T0378)P67.C and (T0378)E68.C only 0.000 apart, marking (T0378)E68.C as missing WARNING: atoms too close: (T0378)L66.C and (T0378)E68.C only 0.000 apart, marking (T0378)E68.C as missing WARNING: atoms too close: (T0378)E65.C and (T0378)E68.C only 0.000 apart, marking (T0378)E68.C as missing WARNING: atoms too close: (T0378)V64.C and (T0378)E68.C only 0.000 apart, marking (T0378)E68.C as missing WARNING: atoms too close: (T0378)E68.N and (T0378)S69.N only 0.000 apart, marking (T0378)E68.N as missing WARNING: atoms too close: (T0378)P67.N and (T0378)S69.N only 0.000 apart, marking (T0378)P67.N as missing WARNING: atoms too close: (T0378)L66.N and (T0378)S69.N only 0.000 apart, marking (T0378)L66.N as missing WARNING: atoms too close: (T0378)E65.N and (T0378)S69.N only 0.000 apart, marking (T0378)E65.N as missing WARNING: atoms too close: (T0378)V64.N and (T0378)S69.N only 0.000 apart, marking (T0378)S69.N as missing WARNING: atoms too close: (T0378)E68.CA and (T0378)S69.CA only 0.000 apart, marking (T0378)S69.CA as missing WARNING: atoms too close: (T0378)P67.CA and (T0378)S69.CA only 0.000 apart, marking (T0378)S69.CA as missing WARNING: atoms too close: (T0378)L66.CA and (T0378)S69.CA only 0.000 apart, marking (T0378)S69.CA as missing WARNING: atoms too close: (T0378)E65.CA and (T0378)S69.CA only 0.000 apart, marking (T0378)S69.CA as missing WARNING: atoms too close: (T0378)V64.CA and (T0378)S69.CA only 0.000 apart, marking (T0378)S69.CA as missing WARNING: atoms too close: (T0378)E68.CB and (T0378)S69.CB only 0.000 apart, marking (T0378)S69.CB as missing WARNING: atoms too close: (T0378)P67.CB and (T0378)S69.CB only 0.000 apart, marking (T0378)S69.CB as missing WARNING: atoms too close: (T0378)L66.CB and (T0378)S69.CB only 0.000 apart, marking (T0378)S69.CB as missing WARNING: atoms too close: (T0378)E65.CB and (T0378)S69.CB only 0.000 apart, marking (T0378)S69.CB as missing WARNING: atoms too close: (T0378)V64.CB and (T0378)S69.CB only 0.000 apart, marking (T0378)S69.CB as missing WARNING: atoms too close: (T0378)E68.O and (T0378)S69.O only 0.000 apart, marking (T0378)S69.O as missing WARNING: atoms too close: (T0378)P67.O and (T0378)S69.O only 0.000 apart, marking (T0378)S69.O as missing WARNING: atoms too close: (T0378)L66.O and (T0378)S69.O only 0.000 apart, marking (T0378)S69.O as missing WARNING: atoms too close: (T0378)E65.O and (T0378)S69.O only 0.000 apart, marking (T0378)S69.O as missing WARNING: atoms too close: (T0378)V64.O and (T0378)S69.O only 0.000 apart, marking (T0378)S69.O as missing WARNING: atoms too close: (T0378)E68.C and (T0378)S69.C only 0.000 apart, marking (T0378)S69.C as missing WARNING: atoms too close: (T0378)P67.C and (T0378)S69.C only 0.000 apart, marking (T0378)S69.C as missing WARNING: atoms too close: (T0378)L66.C and (T0378)S69.C only 0.000 apart, marking (T0378)S69.C as missing WARNING: atoms too close: (T0378)E65.C and (T0378)S69.C only 0.000 apart, marking (T0378)S69.C as missing WARNING: atoms too close: (T0378)V64.C and (T0378)S69.C only 0.000 apart, marking (T0378)S69.C as missing WARNING: atoms too close: (T0378)S69.N and (T0378)F70.N only 0.000 apart, marking (T0378)S69.N as missing WARNING: atoms too close: (T0378)E68.N and (T0378)F70.N only 0.000 apart, marking (T0378)E68.N as missing WARNING: atoms too close: (T0378)P67.N and (T0378)F70.N only 0.000 apart, marking (T0378)P67.N as missing WARNING: atoms too close: (T0378)L66.N and (T0378)F70.N only 0.000 apart, marking (T0378)L66.N as missing WARNING: atoms too close: (T0378)E65.N and (T0378)F70.N only 0.000 apart, marking (T0378)E65.N as missing WARNING: atoms too close: (T0378)V64.N and (T0378)F70.N only 0.000 apart, marking (T0378)F70.N as missing WARNING: atoms too close: (T0378)S69.CA and (T0378)F70.CA only 0.000 apart, marking (T0378)F70.CA as missing WARNING: atoms too close: (T0378)E68.CA and (T0378)F70.CA only 0.000 apart, marking (T0378)F70.CA as missing WARNING: atoms too close: (T0378)P67.CA and (T0378)F70.CA only 0.000 apart, marking (T0378)F70.CA as missing WARNING: atoms too close: (T0378)L66.CA and (T0378)F70.CA only 0.000 apart, marking (T0378)F70.CA as missing WARNING: atoms too close: (T0378)E65.CA and (T0378)F70.CA only 0.000 apart, marking (T0378)F70.CA as missing WARNING: atoms too close: (T0378)V64.CA and (T0378)F70.CA only 0.000 apart, marking (T0378)F70.CA as missing WARNING: atoms too close: (T0378)S69.CB and (T0378)F70.CB only 0.000 apart, marking (T0378)F70.CB as missing WARNING: atoms too close: (T0378)E68.CB and (T0378)F70.CB only 0.000 apart, marking (T0378)F70.CB as missing WARNING: atoms too close: (T0378)P67.CB and (T0378)F70.CB only 0.000 apart, marking (T0378)F70.CB as missing WARNING: atoms too close: (T0378)L66.CB and (T0378)F70.CB only 0.000 apart, marking (T0378)F70.CB as missing WARNING: atoms too close: (T0378)E65.CB and (T0378)F70.CB only 0.000 apart, marking (T0378)F70.CB as missing WARNING: atoms too close: (T0378)V64.CB and (T0378)F70.CB only 0.000 apart, marking (T0378)F70.CB as missing WARNING: atoms too close: (T0378)E68.CG and (T0378)F70.CG only 0.000 apart, marking (T0378)F70.CG as missing WARNING: atoms too close: (T0378)L66.CG and (T0378)F70.CG only 0.000 apart, marking (T0378)F70.CG as missing WARNING: atoms too close: (T0378)E65.CG and (T0378)F70.CG only 0.000 apart, marking (T0378)F70.CG as missing WARNING: atoms too close: (T0378)V64.CG1 and (T0378)F70.CG only 0.000 apart, marking (T0378)F70.CG as missing WARNING: atoms too close: (T0378)S69.O and (T0378)F70.O only 0.000 apart, marking (T0378)F70.O as missing WARNING: atoms too close: (T0378)E68.O and (T0378)F70.O only 0.000 apart, marking (T0378)F70.O as missing WARNING: atoms too close: (T0378)P67.O and (T0378)F70.O only 0.000 apart, marking (T0378)F70.O as missing WARNING: atoms too close: (T0378)L66.O and (T0378)F70.O only 0.000 apart, marking (T0378)F70.O as missing WARNING: atoms too close: (T0378)E65.O and (T0378)F70.O only 0.000 apart, marking (T0378)F70.O as missing WARNING: atoms too close: (T0378)V64.O and (T0378)F70.O only 0.000 apart, marking (T0378)F70.O as missing WARNING: atoms too close: (T0378)S69.C and (T0378)F70.C only 0.000 apart, marking (T0378)F70.C as missing WARNING: atoms too close: (T0378)E68.C and (T0378)F70.C only 0.000 apart, marking (T0378)F70.C as missing WARNING: atoms too close: (T0378)P67.C and (T0378)F70.C only 0.000 apart, marking (T0378)F70.C as missing WARNING: atoms too close: (T0378)L66.C and (T0378)F70.C only 0.000 apart, marking (T0378)F70.C as missing WARNING: atoms too close: (T0378)E65.C and (T0378)F70.C only 0.000 apart, marking (T0378)F70.C as missing WARNING: atoms too close: (T0378)V64.C and (T0378)F70.C only 0.000 apart, marking (T0378)F70.C as missing WARNING: atoms too close: (T0378)F70.N and (T0378)D71.N only 0.000 apart, marking (T0378)F70.N as missing WARNING: atoms too close: (T0378)S69.N and (T0378)D71.N only 0.000 apart, marking (T0378)S69.N as missing WARNING: atoms too close: (T0378)E68.N and (T0378)D71.N only 0.000 apart, marking (T0378)E68.N as missing WARNING: atoms too close: (T0378)P67.N and (T0378)D71.N only 0.000 apart, marking (T0378)P67.N as missing WARNING: atoms too close: (T0378)L66.N and (T0378)D71.N only 0.000 apart, marking (T0378)L66.N as missing WARNING: atoms too close: (T0378)E65.N and (T0378)D71.N only 0.000 apart, marking (T0378)E65.N as missing WARNING: atoms too close: (T0378)V64.N and (T0378)D71.N only 0.000 apart, marking (T0378)D71.N as missing WARNING: atoms too close: (T0378)F70.CA and (T0378)D71.CA only 0.000 apart, marking (T0378)D71.CA as missing WARNING: atoms too close: (T0378)S69.CA and (T0378)D71.CA only 0.000 apart, marking (T0378)D71.CA as missing WARNING: atoms too close: (T0378)E68.CA and (T0378)D71.CA only 0.000 apart, marking (T0378)D71.CA as missing WARNING: atoms too close: (T0378)P67.CA and (T0378)D71.CA only 0.000 apart, marking (T0378)D71.CA as missing WARNING: atoms too close: (T0378)L66.CA and (T0378)D71.CA only 0.000 apart, marking (T0378)D71.CA as missing WARNING: atoms too close: (T0378)E65.CA and (T0378)D71.CA only 0.000 apart, marking (T0378)D71.CA as missing WARNING: atoms too close: (T0378)V64.CA and (T0378)D71.CA only 0.000 apart, marking (T0378)D71.CA as missing WARNING: atoms too close: (T0378)F70.CB and (T0378)D71.CB only 0.000 apart, marking (T0378)D71.CB as missing WARNING: atoms too close: (T0378)S69.CB and (T0378)D71.CB only 0.000 apart, marking (T0378)D71.CB as missing WARNING: atoms too close: (T0378)E68.CB and (T0378)D71.CB only 0.000 apart, marking (T0378)D71.CB as missing WARNING: atoms too close: (T0378)P67.CB and (T0378)D71.CB only 0.000 apart, marking (T0378)D71.CB as missing WARNING: atoms too close: (T0378)L66.CB and (T0378)D71.CB only 0.000 apart, marking (T0378)D71.CB as missing WARNING: atoms too close: (T0378)E65.CB and (T0378)D71.CB only 0.000 apart, marking (T0378)D71.CB as missing WARNING: atoms too close: (T0378)V64.CB and (T0378)D71.CB only 0.000 apart, marking (T0378)D71.CB as missing WARNING: atoms too close: (T0378)F70.CG and (T0378)D71.CG only 0.000 apart, marking (T0378)D71.CG as missing WARNING: atoms too close: (T0378)E68.CG and (T0378)D71.CG only 0.000 apart, marking (T0378)D71.CG as missing WARNING: atoms too close: (T0378)L66.CG and (T0378)D71.CG only 0.000 apart, marking (T0378)D71.CG as missing WARNING: atoms too close: (T0378)E65.CG and (T0378)D71.CG only 0.000 apart, marking (T0378)D71.CG as missing WARNING: atoms too close: (T0378)V64.CG1 and (T0378)D71.CG only 0.000 apart, marking (T0378)D71.CG as missing WARNING: atoms too close: (T0378)F70.O and (T0378)D71.O only 0.000 apart, marking (T0378)D71.O as missing WARNING: atoms too close: (T0378)S69.O and (T0378)D71.O only 0.000 apart, marking (T0378)D71.O as missing WARNING: atoms too close: (T0378)E68.O and (T0378)D71.O only 0.000 apart, marking (T0378)D71.O as missing WARNING: atoms too close: (T0378)P67.O and (T0378)D71.O only 0.000 apart, marking (T0378)D71.O as missing WARNING: atoms too close: (T0378)L66.O and (T0378)D71.O only 0.000 apart, marking (T0378)D71.O as missing WARNING: atoms too close: (T0378)E65.O and (T0378)D71.O only 0.000 apart, marking (T0378)D71.O as missing WARNING: atoms too close: (T0378)V64.O and (T0378)D71.O only 0.000 apart, marking (T0378)D71.O as missing WARNING: atoms too close: (T0378)F70.C and (T0378)D71.C only 0.000 apart, marking (T0378)D71.C as missing WARNING: atoms too close: (T0378)S69.C and (T0378)D71.C only 0.000 apart, marking (T0378)D71.C as missing WARNING: atoms too close: (T0378)E68.C and (T0378)D71.C only 0.000 apart, marking (T0378)D71.C as missing WARNING: atoms too close: (T0378)P67.C and (T0378)D71.C only 0.000 apart, marking (T0378)D71.C as missing WARNING: atoms too close: (T0378)L66.C and (T0378)D71.C only 0.000 apart, marking (T0378)D71.C as missing WARNING: atoms too close: (T0378)E65.C and (T0378)D71.C only 0.000 apart, marking (T0378)D71.C as missing WARNING: atoms too close: (T0378)V64.C and (T0378)D71.C only 0.000 apart, marking (T0378)D71.C as missing WARNING: atoms too close: (T0378)D71.N and (T0378)L181.N only 0.000 apart, marking (T0378)D71.N as missing WARNING: atoms too close: (T0378)F70.N and (T0378)L181.N only 0.000 apart, marking (T0378)F70.N as missing WARNING: atoms too close: (T0378)S69.N and (T0378)L181.N only 0.000 apart, marking (T0378)S69.N as missing WARNING: atoms too close: (T0378)E68.N and (T0378)L181.N only 0.000 apart, marking (T0378)E68.N as missing WARNING: atoms too close: (T0378)P67.N and (T0378)L181.N only 0.000 apart, marking (T0378)P67.N as missing WARNING: atoms too close: (T0378)L66.N and (T0378)L181.N only 0.000 apart, marking (T0378)L66.N as missing WARNING: atoms too close: (T0378)E65.N and (T0378)L181.N only 0.000 apart, marking (T0378)E65.N as missing WARNING: atoms too close: (T0378)V64.N and (T0378)L181.N only 0.000 apart, marking (T0378)L181.N as missing WARNING: atoms too close: (T0378)D71.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing WARNING: atoms too close: (T0378)F70.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing WARNING: atoms too close: (T0378)S69.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing WARNING: atoms too close: (T0378)E68.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing WARNING: atoms too close: (T0378)P67.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing WARNING: atoms too close: (T0378)L66.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing WARNING: atoms too close: (T0378)E65.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing WARNING: atoms too close: (T0378)V64.CA and (T0378)L181.CA only 0.000 apart, marking (T0378)L181.CA as missing WARNING: atoms too close: (T0378)D71.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing WARNING: atoms too close: (T0378)F70.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing WARNING: atoms too close: (T0378)S69.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing WARNING: atoms too close: (T0378)E68.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing WARNING: atoms too close: (T0378)P67.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing WARNING: atoms too close: (T0378)L66.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing WARNING: atoms too close: (T0378)E65.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing WARNING: atoms too close: (T0378)V64.CB and (T0378)L181.CB only 0.000 apart, marking (T0378)L181.CB as missing WARNING: atoms too close: (T0378)D71.CG and (T0378)L181.CG only 0.000 apart, marking (T0378)L181.CG as missing WARNING: atoms too close: (T0378)F70.CG and (T0378)L181.CG only 0.000 apart, marking (T0378)L181.CG as missing WARNING: atoms too close: (T0378)E68.CG and (T0378)L181.CG only 0.000 apart, marking (T0378)L181.CG as missing WARNING: atoms too close: (T0378)L66.CG and (T0378)L181.CG only 0.000 apart, marking (T0378)L181.CG as missing WARNING: atoms too close: (T0378)E65.CG and (T0378)L181.CG only 0.000 apart, marking (T0378)L181.CG as missing WARNING: atoms too close: (T0378)V64.CG1 and (T0378)L181.CG only 0.000 apart, marking (T0378)L181.CG as missing WARNING: atoms too close: (T0378)E68.CD and (T0378)L181.CD1 only 0.000 apart, marking (T0378)L181.CD1 as missing WARNING: atoms too close: (T0378)L66.CD1 and (T0378)L181.CD1 only 0.000 apart, marking (T0378)L181.CD1 as missing WARNING: atoms too close: (T0378)E65.CD and (T0378)L181.CD1 only 0.000 apart, marking (T0378)L181.CD1 as missing WARNING: atoms too close: (T0378)L66.CD2 and (T0378)L181.CD2 only 0.000 apart, marking (T0378)L181.CD2 as missing WARNING: atoms too close: (T0378)D71.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing WARNING: atoms too close: (T0378)F70.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing WARNING: atoms too close: (T0378)S69.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing WARNING: atoms too close: (T0378)E68.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing WARNING: atoms too close: (T0378)P67.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing WARNING: atoms too close: (T0378)L66.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing WARNING: atoms too close: (T0378)E65.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing WARNING: atoms too close: (T0378)V64.O and (T0378)L181.O only 0.000 apart, marking (T0378)L181.O as missing WARNING: atoms too close: (T0378)D71.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing WARNING: atoms too close: (T0378)F70.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing WARNING: atoms too close: (T0378)S69.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing WARNING: atoms too close: (T0378)E68.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing WARNING: atoms too close: (T0378)P67.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing WARNING: atoms too close: (T0378)L66.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing WARNING: atoms too close: (T0378)E65.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing WARNING: atoms too close: (T0378)V64.C and (T0378)L181.C only 0.000 apart, marking (T0378)L181.C as missing WARNING: atoms too close: (T0378)L181.N and (T0378)D182.N only 0.000 apart, marking (T0378)L181.N as missing WARNING: atoms too close: (T0378)D71.N and (T0378)D182.N only 0.000 apart, marking (T0378)D71.N as missing WARNING: atoms too close: (T0378)F70.N and (T0378)D182.N only 0.000 apart, marking (T0378)F70.N as missing WARNING: atoms too close: (T0378)S69.N and (T0378)D182.N only 0.000 apart, marking (T0378)S69.N as missing WARNING: atoms too close: (T0378)E68.N and (T0378)D182.N only 0.000 apart, marking (T0378)E68.N as missing WARNING: atoms too close: (T0378)P67.N and (T0378)D182.N only 0.000 apart, marking (T0378)P67.N as missing WARNING: atoms too close: (T0378)L66.N and (T0378)D182.N only 0.000 apart, marking (T0378)L66.N as missing WARNING: atoms too close: (T0378)E65.N and (T0378)D182.N only 0.000 apart, marking (T0378)E65.N as missing WARNING: atoms too close: (T0378)V64.N and (T0378)D182.N only 0.000 apart, marking (T0378)D182.N as missing WARNING: atoms too close: (T0378)L181.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing WARNING: atoms too close: (T0378)D71.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing WARNING: atoms too close: (T0378)F70.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing WARNING: atoms too close: (T0378)S69.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing WARNING: atoms too close: (T0378)E68.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing WARNING: atoms too close: (T0378)P67.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing WARNING: atoms too close: (T0378)L66.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing WARNING: atoms too close: (T0378)E65.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing WARNING: atoms too close: (T0378)V64.CA and (T0378)D182.CA only 0.000 apart, marking (T0378)D182.CA as missing WARNING: atoms too close: (T0378)L181.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing WARNING: atoms too close: (T0378)D71.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing WARNING: atoms too close: (T0378)F70.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing WARNING: atoms too close: (T0378)S69.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing WARNING: atoms too close: (T0378)E68.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing WARNING: atoms too close: (T0378)P67.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing WARNING: atoms too close: (T0378)L66.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing WARNING: atoms too close: (T0378)E65.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing WARNING: atoms too close: (T0378)V64.CB and (T0378)D182.CB only 0.000 apart, marking (T0378)D182.CB as missing WARNING: atoms too close: (T0378)L181.CG and (T0378)D182.CG only 0.000 apart, marking (T0378)D182.CG as missing WARNING: atoms too close: (T0378)D71.CG and (T0378)D182.CG only 0.000 apart, marking (T0378)D182.CG as missing WARNING: atoms too close: (T0378)F70.CG and (T0378)D182.CG only 0.000 apart, marking (T0378)D182.CG as missing WARNING: atoms too close: (T0378)E68.CG and (T0378)D182.CG only 0.000 apart, marking (T0378)D182.CG as missing WARNING: atoms too close: (T0378)L66.CG and (T0378)D182.CG only 0.000 apart, marking (T0378)D182.CG as missing WARNING: atoms too close: (T0378)E65.CG and (T0378)D182.CG only 0.000 apart, marking (T0378)D182.CG as missing WARNING: atoms too close: (T0378)V64.CG1 and (T0378)D182.CG only 0.000 apart, marking (T0378)D182.CG as missing WARNING: atoms too close: (T0378)L181.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing WARNING: atoms too close: (T0378)D71.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing WARNING: atoms too close: (T0378)F70.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing WARNING: atoms too close: (T0378)S69.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing WARNING: atoms too close: (T0378)E68.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing WARNING: atoms too close: (T0378)P67.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing WARNING: atoms too close: (T0378)L66.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing WARNING: atoms too close: (T0378)E65.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing WARNING: atoms too close: (T0378)V64.O and (T0378)D182.O only 0.000 apart, marking (T0378)D182.O as missing WARNING: atoms too close: (T0378)L181.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing WARNING: atoms too close: (T0378)D71.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing WARNING: atoms too close: (T0378)F70.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing WARNING: atoms too close: (T0378)S69.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing WARNING: atoms too close: (T0378)E68.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing WARNING: atoms too close: (T0378)P67.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing WARNING: atoms too close: (T0378)L66.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing WARNING: atoms too close: (T0378)E65.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing WARNING: atoms too close: (T0378)V64.C and (T0378)D182.C only 0.000 apart, marking (T0378)D182.C as missing WARNING: atoms too close: (T0378)D182.N and (T0378)G227.N only 0.000 apart, marking (T0378)D182.N as missing WARNING: atoms too close: (T0378)L181.N and (T0378)G227.N only 0.000 apart, marking (T0378)L181.N as missing WARNING: atoms too close: (T0378)D71.N and (T0378)G227.N only 0.000 apart, marking (T0378)D71.N as missing WARNING: atoms too close: (T0378)F70.N and (T0378)G227.N only 0.000 apart, marking (T0378)F70.N as missing WARNING: atoms too close: (T0378)S69.N and (T0378)G227.N only 0.000 apart, marking (T0378)S69.N as missing WARNING: atoms too close: (T0378)E68.N and (T0378)G227.N only 0.000 apart, marking (T0378)E68.N as missing WARNING: atoms too close: (T0378)P67.N and (T0378)G227.N only 0.000 apart, marking (T0378)P67.N as missing WARNING: atoms too close: (T0378)L66.N and (T0378)G227.N only 0.000 apart, marking (T0378)L66.N as missing WARNING: atoms too close: (T0378)E65.N and (T0378)G227.N only 0.000 apart, marking (T0378)E65.N as missing WARNING: atoms too close: (T0378)V64.N and (T0378)G227.N only 0.000 apart, marking (T0378)G227.N as missing WARNING: atoms too close: (T0378)D182.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing WARNING: atoms too close: (T0378)L181.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing WARNING: atoms too close: (T0378)D71.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing WARNING: atoms too close: (T0378)F70.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing WARNING: atoms too close: (T0378)S69.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing WARNING: atoms too close: (T0378)E68.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing WARNING: atoms too close: (T0378)P67.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing WARNING: atoms too close: (T0378)L66.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing WARNING: atoms too close: (T0378)E65.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing WARNING: atoms too close: (T0378)V64.CA and (T0378)G227.CA only 0.000 apart, marking (T0378)G227.CA as missing WARNING: atoms too close: (T0378)D182.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing WARNING: atoms too close: (T0378)L181.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing WARNING: atoms too close: (T0378)D71.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing WARNING: atoms too close: (T0378)F70.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing WARNING: atoms too close: (T0378)S69.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing WARNING: atoms too close: (T0378)E68.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing WARNING: atoms too close: (T0378)P67.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing WARNING: atoms too close: (T0378)L66.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing WARNING: atoms too close: (T0378)E65.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing WARNING: atoms too close: (T0378)V64.O and (T0378)G227.O only 0.000 apart, marking (T0378)G227.O as missing WARNING: atoms too close: (T0378)D182.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing WARNING: atoms too close: (T0378)L181.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing WARNING: atoms too close: (T0378)D71.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing WARNING: atoms too close: (T0378)F70.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing WARNING: atoms too close: (T0378)S69.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing WARNING: atoms too close: (T0378)E68.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing WARNING: atoms too close: (T0378)P67.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing WARNING: atoms too close: (T0378)L66.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing WARNING: atoms too close: (T0378)E65.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing WARNING: atoms too close: (T0378)V64.C and (T0378)G227.C only 0.000 apart, marking (T0378)G227.C as missing WARNING: atoms too close: (T0378)G227.N and (T0378)L228.N only 0.000 apart, marking (T0378)G227.N as missing WARNING: atoms too close: (T0378)D182.N and (T0378)L228.N only 0.000 apart, marking (T0378)D182.N as missing WARNING: atoms too close: (T0378)L181.N and (T0378)L228.N only 0.000 apart, marking (T0378)L181.N as missing WARNING: atoms too close: (T0378)D71.N and (T0378)L228.N only 0.000 apart, marking (T0378)D71.N as missing WARNING: atoms too close: (T0378)F70.N and (T0378)L228.N only 0.000 apart, marking (T0378)F70.N as missing WARNING: atoms too close: (T0378)S69.N and (T0378)L228.N only 0.000 apart, marking (T0378)S69.N as missing WARNING: atoms too close: (T0378)E68.N and (T0378)L228.N only 0.000 apart, marking (T0378)E68.N as missing WARNING: atoms too close: (T0378)P67.N and (T0378)L228.N only 0.000 apart, marking (T0378)P67.N as missing WARNING: atoms too close: (T0378)L66.N and (T0378)L228.N only 0.000 apart, marking (T0378)L66.N as missing WARNING: atoms too close: (T0378)E65.N and (T0378)L228.N only 0.000 apart, marking (T0378)E65.N as missing WARNING: atoms too close: (T0378)V64.N and (T0378)L228.N only 0.000 apart, marking (T0378)L228.N as missing WARNING: atoms too close: (T0378)G227.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing WARNING: atoms too close: (T0378)D182.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing WARNING: atoms too close: (T0378)L181.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing WARNING: atoms too close: (T0378)D71.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing WARNING: atoms too close: (T0378)F70.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing WARNING: atoms too close: (T0378)S69.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing WARNING: atoms too close: (T0378)E68.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing WARNING: atoms too close: (T0378)P67.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing WARNING: atoms too close: (T0378)L66.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing WARNING: atoms too close: (T0378)E65.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing WARNING: atoms too close: (T0378)V64.CA and (T0378)L228.CA only 0.000 apart, marking (T0378)L228.CA as missing WARNING: atoms too close: (T0378)D182.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing WARNING: atoms too close: (T0378)L181.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing WARNING: atoms too close: (T0378)D71.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing WARNING: atoms too close: (T0378)F70.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing WARNING: atoms too close: (T0378)S69.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing WARNING: atoms too close: (T0378)E68.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing WARNING: atoms too close: (T0378)P67.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing WARNING: atoms too close: (T0378)L66.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing WARNING: atoms too close: (T0378)E65.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing WARNING: atoms too close: (T0378)V64.CB and (T0378)L228.CB only 0.000 apart, marking (T0378)L228.CB as missing WARNING: atoms too close: (T0378)D182.CG and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing WARNING: atoms too close: (T0378)L181.CG and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing WARNING: atoms too close: (T0378)D71.CG and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing WARNING: atoms too close: (T0378)F70.CG and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing WARNING: atoms too close: (T0378)E68.CG and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing WARNING: atoms too close: (T0378)L66.CG and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing WARNING: atoms too close: (T0378)E65.CG and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing WARNING: atoms too close: (T0378)V64.CG1 and (T0378)L228.CG only 0.000 apart, marking (T0378)L228.CG as missing WARNING: atoms too close: (T0378)L181.CD1 and (T0378)L228.CD1 only 0.000 apart, marking (T0378)L228.CD1 as missing WARNING: atoms too close: (T0378)E68.CD and (T0378)L228.CD1 only 0.000 apart, marking (T0378)L228.CD1 as missing WARNING: atoms too close: (T0378)L66.CD1 and (T0378)L228.CD1 only 0.000 apart, marking (T0378)L228.CD1 as missing WARNING: atoms too close: (T0378)E65.CD and (T0378)L228.CD1 only 0.000 apart, marking (T0378)L228.CD1 as missing WARNING: atoms too close: (T0378)L181.CD2 and (T0378)L228.CD2 only 0.000 apart, marking (T0378)L228.CD2 as missing WARNING: atoms too close: (T0378)L66.CD2 and (T0378)L228.CD2 only 0.000 apart, marking (T0378)L228.CD2 as missing WARNING: atoms too close: (T0378)G227.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing WARNING: atoms too close: (T0378)D182.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing WARNING: atoms too close: (T0378)L181.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing WARNING: atoms too close: (T0378)D71.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing WARNING: atoms too close: (T0378)F70.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing WARNING: atoms too close: (T0378)S69.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing WARNING: atoms too close: (T0378)E68.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing WARNING: atoms too close: (T0378)P67.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing WARNING: atoms too close: (T0378)L66.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing WARNING: atoms too close: (T0378)E65.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing WARNING: atoms too close: (T0378)V64.O and (T0378)L228.O only 0.000 apart, marking (T0378)L228.O as missing WARNING: atoms too close: (T0378)G227.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing WARNING: atoms too close: (T0378)D182.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing WARNING: atoms too close: (T0378)L181.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing WARNING: atoms too close: (T0378)D71.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing WARNING: atoms too close: (T0378)F70.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing WARNING: atoms too close: (T0378)S69.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing WARNING: atoms too close: (T0378)E68.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing WARNING: atoms too close: (T0378)P67.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing WARNING: atoms too close: (T0378)L66.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing WARNING: atoms too close: (T0378)E65.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing WARNING: atoms too close: (T0378)V64.C and (T0378)L228.C only 0.000 apart, marking (T0378)L228.C as missing WARNING: atoms too close: (T0378)L228.N and (T0378)S229.N only 0.000 apart, marking (T0378)L228.N as missing WARNING: atoms too close: (T0378)G227.N and (T0378)S229.N only 0.000 apart, marking (T0378)G227.N as missing WARNING: atoms too close: (T0378)D182.N and (T0378)S229.N only 0.000 apart, marking (T0378)D182.N as missing WARNING: atoms too close: (T0378)L181.N and (T0378)S229.N only 0.000 apart, marking (T0378)L181.N as missing WARNING: atoms too close: (T0378)D71.N and (T0378)S229.N only 0.000 apart, marking (T0378)D71.N as missing WARNING: atoms too close: (T0378)F70.N and (T0378)S229.N only 0.000 apart, marking (T0378)F70.N as missing WARNING: atoms too close: (T0378)S69.N and (T0378)S229.N only 0.000 apart, marking (T0378)S69.N as missing WARNING: atoms too close: (T0378)E68.N and (T0378)S229.N only 0.000 apart, marking (T0378)E68.N as missing WARNING: atoms too close: (T0378)P67.N and (T0378)S229.N only 0.000 apart, marking (T0378)P67.N as missing WARNING: atoms too close: (T0378)L66.N and (T0378)S229.N only 0.000 apart, marking (T0378)L66.N as missing WARNING: atoms too close: (T0378)E65.N and (T0378)S229.N only 0.000 apart, marking (T0378)E65.N as missing WARNING: atoms too close: (T0378)V64.N and (T0378)S229.N only 0.000 apart, marking (T0378)S229.N as missing WARNING: atoms too close: (T0378)L228.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing WARNING: atoms too close: (T0378)G227.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing WARNING: atoms too close: (T0378)D182.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing WARNING: atoms too close: (T0378)L181.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing WARNING: atoms too close: (T0378)D71.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing WARNING: atoms too close: (T0378)F70.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing WARNING: atoms too close: (T0378)S69.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing WARNING: atoms too close: (T0378)E68.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing WARNING: atoms too close: (T0378)P67.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing WARNING: atoms too close: (T0378)L66.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing WARNING: atoms too close: (T0378)E65.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing WARNING: atoms too close: (T0378)V64.CA and (T0378)S229.CA only 0.000 apart, marking (T0378)S229.CA as missing WARNING: atoms too close: (T0378)L228.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing WARNING: atoms too close: (T0378)D182.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing WARNING: atoms too close: (T0378)L181.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing WARNING: atoms too close: (T0378)D71.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing WARNING: atoms too close: (T0378)F70.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing WARNING: atoms too close: (T0378)S69.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing WARNING: atoms too close: (T0378)E68.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing WARNING: atoms too close: (T0378)P67.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing WARNING: atoms too close: (T0378)L66.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing WARNING: atoms too close: (T0378)E65.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing WARNING: atoms too close: (T0378)V64.CB and (T0378)S229.CB only 0.000 apart, marking (T0378)S229.CB as missing WARNING: atoms too close: (T0378)L228.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing WARNING: atoms too close: (T0378)G227.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing WARNING: atoms too close: (T0378)D182.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing WARNING: atoms too close: (T0378)L181.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing WARNING: atoms too close: (T0378)D71.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing WARNING: atoms too close: (T0378)F70.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing WARNING: atoms too close: (T0378)S69.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing WARNING: atoms too close: (T0378)E68.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing WARNING: atoms too close: (T0378)P67.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing WARNING: atoms too close: (T0378)L66.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing WARNING: atoms too close: (T0378)E65.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing WARNING: atoms too close: (T0378)V64.O and (T0378)S229.O only 0.000 apart, marking (T0378)S229.O as missing WARNING: atoms too close: (T0378)L228.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing WARNING: atoms too close: (T0378)G227.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing WARNING: atoms too close: (T0378)D182.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing WARNING: atoms too close: (T0378)L181.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing WARNING: atoms too close: (T0378)D71.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing WARNING: atoms too close: (T0378)F70.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing WARNING: atoms too close: (T0378)S69.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing WARNING: atoms too close: (T0378)E68.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing WARNING: atoms too close: (T0378)P67.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing WARNING: atoms too close: (T0378)L66.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing WARNING: atoms too close: (T0378)E65.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing WARNING: atoms too close: (T0378)V64.C and (T0378)S229.C only 0.000 apart, marking (T0378)S229.C as missing WARNING: atoms too close: (T0378)S229.N and (T0378)V230.N only 0.000 apart, marking (T0378)S229.N as missing WARNING: atoms too close: (T0378)L228.N and (T0378)V230.N only 0.000 apart, marking (T0378)L228.N as missing WARNING: atoms too close: (T0378)G227.N and (T0378)V230.N only 0.000 apart, marking (T0378)G227.N as missing WARNING: atoms too close: (T0378)D182.N and (T0378)V230.N only 0.000 apart, marking (T0378)D182.N as missing WARNING: atoms too close: (T0378)L181.N and (T0378)V230.N only 0.000 apart, marking (T0378)L181.N as missing WARNING: atoms too close: (T0378)D71.N and (T0378)V230.N only 0.000 apart, marking (T0378)D71.N as missing WARNING: atoms too close: (T0378)F70.N and (T0378)V230.N only 0.000 apart, marking (T0378)F70.N as missing WARNING: atoms too close: (T0378)S69.N and (T0378)V230.N only 0.000 apart, marking (T0378)S69.N as missing WARNING: atoms too close: (T0378)E68.N and (T0378)V230.N only 0.000 apart, marking (T0378)E68.N as missing WARNING: atoms too close: (T0378)P67.N and (T0378)V230.N only 0.000 apart, marking (T0378)P67.N as missing WARNING: atoms too close: (T0378)L66.N and (T0378)V230.N only 0.000 apart, marking (T0378)L66.N as missing WARNING: atoms too close: (T0378)E65.N and (T0378)V230.N only 0.000 apart, marking (T0378)E65.N as missing WARNING: atoms too close: (T0378)V64.N and (T0378)V230.N only 0.000 apart, marking (T0378)V230.N as missing WARNING: atoms too close: (T0378)S229.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing WARNING: atoms too close: (T0378)L228.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing WARNING: atoms too close: (T0378)G227.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing WARNING: atoms too close: (T0378)D182.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing WARNING: atoms too close: (T0378)L181.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing WARNING: atoms too close: (T0378)D71.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing WARNING: atoms too close: (T0378)F70.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing WARNING: atoms too close: (T0378)S69.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing WARNING: atoms too close: (T0378)E68.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing WARNING: atoms too close: (T0378)P67.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing WARNING: atoms too close: (T0378)L66.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing WARNING: atoms too close: (T0378)E65.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing WARNING: atoms too close: (T0378)V64.CA and (T0378)V230.CA only 0.000 apart, marking (T0378)V230.CA as missing WARNING: atoms too close: (T0378)S229.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing WARNING: atoms too close: (T0378)L228.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing WARNING: atoms too close: (T0378)D182.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing WARNING: atoms too close: (T0378)L181.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing WARNING: atoms too close: (T0378)D71.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing WARNING: atoms too close: (T0378)F70.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing WARNING: atoms too close: (T0378)S69.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing WARNING: atoms too close: (T0378)E68.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing WARNING: atoms too close: (T0378)P67.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing WARNING: atoms too close: (T0378)L66.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing WARNING: atoms too close: (T0378)E65.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing WARNING: atoms too close: (T0378)V64.CB and (T0378)V230.CB only 0.000 apart, marking (T0378)V230.CB as missing WARNING: atoms too close: (T0378)L228.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing WARNING: atoms too close: (T0378)D182.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing WARNING: atoms too close: (T0378)L181.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing WARNING: atoms too close: (T0378)D71.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing WARNING: atoms too close: (T0378)F70.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing WARNING: atoms too close: (T0378)E68.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing WARNING: atoms too close: (T0378)L66.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing WARNING: atoms too close: (T0378)E65.CG and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing WARNING: atoms too close: (T0378)V64.CG1 and (T0378)V230.CG1 only 0.000 apart, marking (T0378)V230.CG1 as missing WARNING: atoms too close: (T0378)S229.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing WARNING: atoms too close: (T0378)L228.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing WARNING: atoms too close: (T0378)G227.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing WARNING: atoms too close: (T0378)D182.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing WARNING: atoms too close: (T0378)L181.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing WARNING: atoms too close: (T0378)D71.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing WARNING: atoms too close: (T0378)F70.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing WARNING: atoms too close: (T0378)S69.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing WARNING: atoms too close: (T0378)E68.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing WARNING: atoms too close: (T0378)P67.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing WARNING: atoms too close: (T0378)L66.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing WARNING: atoms too close: (T0378)E65.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing WARNING: atoms too close: (T0378)V64.O and (T0378)V230.O only 0.000 apart, marking (T0378)V230.O as missing WARNING: atoms too close: (T0378)S229.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing WARNING: atoms too close: (T0378)L228.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing WARNING: atoms too close: (T0378)G227.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing WARNING: atoms too close: (T0378)D182.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing WARNING: atoms too close: (T0378)L181.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing WARNING: atoms too close: (T0378)D71.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing WARNING: atoms too close: (T0378)F70.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing WARNING: atoms too close: (T0378)S69.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing WARNING: atoms too close: (T0378)E68.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing WARNING: atoms too close: (T0378)P67.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing WARNING: atoms too close: (T0378)L66.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing WARNING: atoms too close: (T0378)E65.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing WARNING: atoms too close: (T0378)V64.C and (T0378)V230.C only 0.000 apart, marking (T0378)V230.C as missing WARNING: atoms too close: (T0378)V230.N and (T0378)K231.N only 0.000 apart, marking (T0378)V230.N as missing WARNING: atoms too close: (T0378)S229.N and (T0378)K231.N only 0.000 apart, marking (T0378)S229.N as missing WARNING: atoms too close: (T0378)L228.N and (T0378)K231.N only 0.000 apart, marking (T0378)L228.N as missing WARNING: atoms too close: (T0378)G227.N and (T0378)K231.N only 0.000 apart, marking (T0378)G227.N as missing WARNING: atoms too close: (T0378)D182.N and (T0378)K231.N only 0.000 apart, marking (T0378)D182.N as missing WARNING: atoms too close: (T0378)L181.N and (T0378)K231.N only 0.000 apart, marking (T0378)L181.N as missing WARNING: atoms too close: (T0378)D71.N and (T0378)K231.N only 0.000 apart, marking (T0378)D71.N as missing WARNING: atoms too close: (T0378)F70.N and (T0378)K231.N only 0.000 apart, marking (T0378)F70.N as missing WARNING: atoms too close: (T0378)S69.N and (T0378)K231.N only 0.000 apart, marking (T0378)S69.N as missing WARNING: atoms too close: (T0378)E68.N and (T0378)K231.N only 0.000 apart, marking (T0378)E68.N as missing WARNING: atoms too close: (T0378)P67.N and (T0378)K231.N only 0.000 apart, marking (T0378)P67.N as missing WARNING: atoms too close: (T0378)L66.N and (T0378)K231.N only 0.000 apart, marking (T0378)L66.N as missing WARNING: atoms too close: (T0378)E65.N and (T0378)K231.N only 0.000 apart, marking (T0378)E65.N as missing WARNING: atoms too close: (T0378)V64.N and (T0378)K231.N only 0.000 apart, marking (T0378)K231.N as missing WARNING: atoms too close: (T0378)V230.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing WARNING: atoms too close: (T0378)S229.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing WARNING: atoms too close: (T0378)L228.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing WARNING: atoms too close: (T0378)G227.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing WARNING: atoms too close: (T0378)D182.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing WARNING: atoms too close: (T0378)L181.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing WARNING: atoms too close: (T0378)D71.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing WARNING: atoms too close: (T0378)F70.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing WARNING: atoms too close: (T0378)S69.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing WARNING: atoms too close: (T0378)E68.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing WARNING: atoms too close: (T0378)P67.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing WARNING: atoms too close: (T0378)L66.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing WARNING: atoms too close: (T0378)E65.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing WARNING: atoms too close: (T0378)V64.CA and (T0378)K231.CA only 0.000 apart, marking (T0378)K231.CA as missing WARNING: atoms too close: (T0378)V230.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing WARNING: atoms too close: (T0378)S229.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing WARNING: atoms too close: (T0378)L228.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing WARNING: atoms too close: (T0378)D182.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing WARNING: atoms too close: (T0378)L181.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing WARNING: atoms too close: (T0378)D71.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing WARNING: atoms too close: (T0378)F70.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing WARNING: atoms too close: (T0378)S69.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing WARNING: atoms too close: (T0378)E68.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing WARNING: atoms too close: (T0378)P67.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing WARNING: atoms too close: (T0378)L66.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing WARNING: atoms too close: (T0378)E65.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing WARNING: atoms too close: (T0378)V64.CB and (T0378)K231.CB only 0.000 apart, marking (T0378)K231.CB as missing WARNING: atoms too close: (T0378)V230.CG1 and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing WARNING: atoms too close: (T0378)L228.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing WARNING: atoms too close: (T0378)D182.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing WARNING: atoms too close: (T0378)L181.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing WARNING: atoms too close: (T0378)D71.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing WARNING: atoms too close: (T0378)F70.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing WARNING: atoms too close: (T0378)E68.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing WARNING: atoms too close: (T0378)L66.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing WARNING: atoms too close: (T0378)E65.CG and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing WARNING: atoms too close: (T0378)V64.CG1 and (T0378)K231.CG only 0.000 apart, marking (T0378)K231.CG as missing WARNING: atoms too close: (T0378)L228.CD1 and (T0378)K231.CD only 0.000 apart, marking (T0378)K231.CD as missing WARNING: atoms too close: (T0378)L181.CD1 and (T0378)K231.CD only 0.000 apart, marking (T0378)K231.CD as missing WARNING: atoms too close: (T0378)E68.CD and (T0378)K231.CD only 0.000 apart, marking (T0378)K231.CD as missing WARNING: atoms too close: (T0378)L66.CD1 and (T0378)K231.CD only 0.000 apart, marking (T0378)K231.CD as missing WARNING: atoms too close: (T0378)E65.CD and (T0378)K231.CD only 0.000 apart, marking (T0378)K231.CD as missing WARNING: atoms too close: (T0378)V230.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing WARNING: atoms too close: (T0378)S229.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing WARNING: atoms too close: (T0378)L228.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing WARNING: atoms too close: (T0378)G227.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing WARNING: atoms too close: (T0378)D182.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing WARNING: atoms too close: (T0378)L181.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing WARNING: atoms too close: (T0378)D71.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing WARNING: atoms too close: (T0378)F70.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing WARNING: atoms too close: (T0378)S69.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing WARNING: atoms too close: (T0378)E68.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing WARNING: atoms too close: (T0378)P67.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing WARNING: atoms too close: (T0378)L66.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing WARNING: atoms too close: (T0378)E65.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing WARNING: atoms too close: (T0378)V64.O and (T0378)K231.O only 0.000 apart, marking (T0378)K231.O as missing WARNING: atoms too close: (T0378)V230.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing WARNING: atoms too close: (T0378)S229.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing WARNING: atoms too close: (T0378)L228.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing WARNING: atoms too close: (T0378)G227.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing WARNING: atoms too close: (T0378)D182.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing WARNING: atoms too close: (T0378)L181.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing WARNING: atoms too close: (T0378)D71.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing WARNING: atoms too close: (T0378)F70.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing WARNING: atoms too close: (T0378)S69.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing WARNING: atoms too close: (T0378)E68.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing WARNING: atoms too close: (T0378)P67.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing WARNING: atoms too close: (T0378)L66.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing WARNING: atoms too close: (T0378)E65.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing WARNING: atoms too close: (T0378)V64.C and (T0378)K231.C only 0.000 apart, marking (T0378)K231.C as missing # WARNING: incomplete conformation T0378 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 0.0169 model score 0.0318 model score 0.0343 model score 0.0689 model score 0.0037 model score 0.0022 model score 0.0168 model score 0.3394 model score 0.0336 model score 0.0041 model score 0.3296 model score 0.0164 model score 0.0480 model score 0.0045 model score 0.0401 model score -0.0230 model score -0.2785 model score -0.2180 model score -0.0291 model score -0.0095 model score 1.7405 model score 1.7877 model score 1.6278 model score 1.7221 model score 1.6720 model score -0.3017 model score 0.0692 model score 0.0137 model score -0.2570 model score -0.0339 model score 0.0157 model score -0.2565 model score -0.2069 model score -0.2716 model score -0.1996 model score -0.2058 model score -0.0392 model score -0.0628 model score -0.0609 model score -0.0327 model score -0.0084 model score 0.3585 model score 1.2619 model score 1.2693 model score 1.2607 model score 1.2601 model score 1.2594 model score -0.2267 model score -0.2147 model score -0.0943 model score -0.0827 model score -0.0648 model score -0.2799 model score -0.2058 model score -0.0827 model score -0.2565 model score -0.2265 model score -0.1269 model score -0.1131 model score -0.3205 model score -0.1375 model score -0.0990 model score 1.2630 model score 1.2653 model score 1.2653 model score 1.2588 model score 1.2602 model score 1.2630 model score 1.2653 model score 1.2653 model score 1.2630 model score 1.2588 model score 2.3066 model score 2.3624 model score 2.2240 model score 2.1164 model score 2.1504 model score 1.2644 model score 1.2604 model score 1.2667 model score 1.2771 model score 1.2768 model score -0.1142 model score 0.0577 model score -0.0548 model score -0.0607 model score 0.1183 model score -0.1495 model score 0.0892 model score 0.1868 model score 0.2187 model score 0.2320 model score -0.2689 model score -0.2483 model score -0.2513 model score -0.2849 model score -0.2725 model score -0.2815 model score -0.3169 model score -0.3275 model score -0.2149 model score -0.0857 model score -0.0275 model score 0.0106 model score 0.0746 model score -0.2674 model score 0.0537 model score 0.0649 model score 0.0401 model score 0.0514 model score 1.2613 model score -0.2718 model score -0.1246 model score -0.1239 model score -0.2665 model score -0.2035 model score -0.2077 model score -0.2035 model score -0.2665 model score -0.1362 model score -0.1239 model score -0.3082 model score -0.2544 model score -0.1995 model score -0.2151 model score 0.0236 model score -0.2674 model score 1.4629 model score 1.4579 model score 1.4558 model score 1.4734 model score 1.4712 model score 1.4706 model score 1.8320 model score 1.1644 model score 1.4623 model score 1.4615 model score -0.2557 model score -0.0749 model score -0.2007 model score -0.1031 model score -0.0836 model score -0.1581 model score -0.2421 model score -0.2501 model score -0.2378 model score -0.0308 model score -0.1197 model score -0.2119 model score 0.0879 model score 0.0970 model score 0.1025 model score -0.2552 model score -0.2647 model score -0.2126 model score -0.2818 model score -0.2880 model score -0.2522 model score -0.2360 model score -0.1903 model score -0.1241 model score 0.9475 model score 0.5764 model score -0.2770 model score -0.2459 model score -0.1462 model score 0.3087 model score 0.3486 model score -0.2181 model score -0.2318 model score -0.2384 model score -0.1976 model score 0.1214 model score -0.1608 model score 1.2653 model score 1.2602 model score 1.2604 model score 1.2595 model score 1.2635 model score 1.2644 model score 1.2631 model score 1.2648 model score 1.2614 model score 1.2643 model score -0.1693 model score -0.2311 model score -0.1266 model score -0.0102 model score 0.0257 model score -0.2880 model score -0.0965 model score -0.0554 model score 0.3038 model score 0.3146 model score -0.2818 model score -0.0965 model score -0.0371 model score 0.3188 model score 0.3069 model score -0.2745 model score -0.0982 model score -0.0468 model score 0.3193 model score 0.3146 model score 1.2644 model score 1.2653 model score 1.2613 model score 1.2588 model score 1.2639 model score -0.2908 model score 1.2644 model score 1.2653 model score 1.2613 model score 1.2588 model score 1.2639 model score -0.3151 model score -0.3160 model score -0.2971 model score -0.2961 model score -0.3493 model score -0.2824 model score -0.2639 model score 1.2653 model score 1.2630 model score 1.2588 model score 1.2602 model score 1.2771 model score 0.2966 model score 0.3091 model score 0.3038 model score 0.3234 model score 0.2904 model score 2.1069 model score 2.1306 model score 2.3902 model score 2.3950 model score 2.4451 model score -0.0335 model score -0.0200 model score 0.3751 model score 1.7787 model score 1.2375 model score -0.1032 model score -0.1032 model score -0.0951 model score -0.0933 model score 0.1095 model score -0.1897 model score -0.2029 model score -0.0494 model score -0.2259 model score 0.1128 model score 0.2488 model score 0.1869 model score -0.2584 USE_META, weight: 0.8821 cost: 0.0169 min: -0.3493 max: 2.4451 USE_META, weight: 0.8773 cost: 0.0318 min: -0.3493 max: 2.4451 USE_META, weight: 0.8765 cost: 0.0343 min: -0.3493 max: 2.4451 USE_META, weight: 0.8653 cost: 0.0689 min: -0.3493 max: 2.4451 USE_META, weight: 0.8863 cost: 0.0037 min: -0.3493 max: 2.4451 USE_META, weight: 0.8868 cost: 0.0022 min: -0.3493 max: 2.4451 USE_META, weight: 0.8821 cost: 0.0168 min: -0.3493 max: 2.4451 USE_META, weight: 0.7782 cost: 0.3394 min: -0.3493 max: 2.4451 USE_META, weight: 0.8767 cost: 0.0336 min: -0.3493 max: 2.4451 USE_META, weight: 0.8862 cost: 0.0041 min: -0.3493 max: 2.4451 USE_META, weight: 0.7814 cost: 0.3296 min: -0.3493 max: 2.4451 USE_META, weight: 0.8822 cost: 0.0164 min: -0.3493 max: 2.4451 USE_META, weight: 0.8720 cost: 0.0480 min: -0.3493 max: 2.4451 USE_META, weight: 0.8861 cost: 0.0045 min: -0.3493 max: 2.4451 USE_META, weight: 0.8746 cost: 0.0401 min: -0.3493 max: 2.4451 USE_META, weight: 0.8949 cost: -0.0230 min: -0.3493 max: 2.4451 USE_META, weight: 0.9772 cost: -0.2785 min: -0.3493 max: 2.4451 USE_META, weight: 0.9577 cost: -0.2180 min: -0.3493 max: 2.4451 USE_META, weight: 0.8969 cost: -0.0291 min: -0.3493 max: 2.4451 USE_META, weight: 0.8906 cost: -0.0095 min: -0.3493 max: 2.4451 USE_META, weight: 0.3269 cost: 1.7405 min: -0.3493 max: 2.4451 USE_META, weight: 0.3117 cost: 1.7877 min: -0.3493 max: 2.4451 USE_META, weight: 0.3632 cost: 1.6278 min: -0.3493 max: 2.4451 USE_META, weight: 0.3329 cost: 1.7221 min: -0.3493 max: 2.4451 USE_META, weight: 0.3490 cost: 1.6720 min: -0.3493 max: 2.4451 USE_META, weight: 0.9847 cost: -0.3017 min: -0.3493 max: 2.4451 USE_META, weight: 0.8652 cost: 0.0692 min: -0.3493 max: 2.4451 USE_META, weight: 0.8831 cost: 0.0137 min: -0.3493 max: 2.4451 USE_META, weight: 0.9703 cost: -0.2570 min: -0.3493 max: 2.4451 USE_META, weight: 0.8984 cost: -0.0339 min: -0.3493 max: 2.4451 USE_META, weight: 0.8824 cost: 0.0157 min: -0.3493 max: 2.4451 USE_META, weight: 0.9701 cost: -0.2565 min: -0.3493 max: 2.4451 USE_META, weight: 0.9541 cost: -0.2069 min: -0.3493 max: 2.4451 USE_META, weight: 0.9750 cost: -0.2716 min: -0.3493 max: 2.4451 USE_META, weight: 0.9518 cost: -0.1996 min: -0.3493 max: 2.4451 USE_META, weight: 0.9538 cost: -0.2058 min: -0.3493 max: 2.4451 USE_META, weight: 0.9001 cost: -0.0392 min: -0.3493 max: 2.4451 USE_META, weight: 0.9077 cost: -0.0628 min: -0.3493 max: 2.4451 USE_META, weight: 0.9071 cost: -0.0609 min: -0.3493 max: 2.4451 USE_META, weight: 0.8980 cost: -0.0327 min: -0.3493 max: 2.4451 USE_META, weight: 0.8902 cost: -0.0084 min: -0.3493 max: 2.4451 USE_META, weight: 0.7720 cost: 0.3585 min: -0.3493 max: 2.4451 USE_META, weight: 0.4811 cost: 1.2619 min: -0.3493 max: 2.4451 USE_META, weight: 0.4787 cost: 1.2693 min: -0.3493 max: 2.4451 USE_META, weight: 0.4815 cost: 1.2607 min: -0.3493 max: 2.4451 USE_META, weight: 0.4817 cost: 1.2601 min: -0.3493 max: 2.4451 USE_META, weight: 0.4819 cost: 1.2594 min: -0.3493 max: 2.4451 USE_META, weight: 0.9605 cost: -0.2267 min: -0.3493 max: 2.4451 USE_META, weight: 0.9567 cost: -0.2147 min: -0.3493 max: 2.4451 USE_META, weight: 0.9179 cost: -0.0943 min: -0.3493 max: 2.4451 USE_META, weight: 0.9141 cost: -0.0827 min: -0.3493 max: 2.4451 USE_META, weight: 0.9084 cost: -0.0648 min: -0.3493 max: 2.4451 USE_META, weight: 0.9777 cost: -0.2799 min: -0.3493 max: 2.4451 USE_META, weight: 0.9538 cost: -0.2058 min: -0.3493 max: 2.4451 USE_META, weight: 0.9141 cost: -0.0827 min: -0.3493 max: 2.4451 USE_META, weight: 0.9701 cost: -0.2565 min: -0.3493 max: 2.4451 USE_META, weight: 0.9604 cost: -0.2265 min: -0.3493 max: 2.4451 USE_META, weight: 0.9284 cost: -0.1269 min: -0.3493 max: 2.4451 USE_META, weight: 0.9239 cost: -0.1131 min: -0.3493 max: 2.4451 USE_META, weight: 0.9907 cost: -0.3205 min: -0.3493 max: 2.4451 USE_META, weight: 0.9318 cost: -0.1375 min: -0.3493 max: 2.4451 USE_META, weight: 0.9194 cost: -0.0990 min: -0.3493 max: 2.4451 USE_META, weight: 0.4807 cost: 1.2630 min: -0.3493 max: 2.4451 USE_META, weight: 0.4800 cost: 1.2653 min: -0.3493 max: 2.4451 USE_META, weight: 0.4800 cost: 1.2653 min: -0.3493 max: 2.4451 USE_META, weight: 0.4821 cost: 1.2588 min: -0.3493 max: 2.4451 USE_META, weight: 0.4816 cost: 1.2602 min: -0.3493 max: 2.4451 USE_META, weight: 0.4807 cost: 1.2630 min: -0.3493 max: 2.4451 USE_META, weight: 0.4800 cost: 1.2653 min: -0.3493 max: 2.4451 USE_META, weight: 0.4800 cost: 1.2653 min: -0.3493 max: 2.4451 USE_META, weight: 0.4807 cost: 1.2630 min: -0.3493 max: 2.4451 USE_META, weight: 0.4821 cost: 1.2588 min: -0.3493 max: 2.4451 USE_META, weight: 0.1446 cost: 2.3066 min: -0.3493 max: 2.4451 USE_META, weight: 0.1266 cost: 2.3624 min: -0.3493 max: 2.4451 USE_META, weight: 0.1712 cost: 2.2240 min: -0.3493 max: 2.4451 USE_META, weight: 0.2059 cost: 2.1164 min: -0.3493 max: 2.4451 USE_META, weight: 0.1949 cost: 2.1504 min: -0.3493 max: 2.4451 USE_META, weight: 0.4803 cost: 1.2644 min: -0.3493 max: 2.4451 USE_META, weight: 0.4816 cost: 1.2604 min: -0.3493 max: 2.4451 USE_META, weight: 0.4795 cost: 1.2667 min: -0.3493 max: 2.4451 USE_META, weight: 0.4762 cost: 1.2771 min: -0.3493 max: 2.4451 USE_META, weight: 0.4763 cost: 1.2768 min: -0.3493 max: 2.4451 USE_META, weight: 0.9243 cost: -0.1142 min: -0.3493 max: 2.4451 USE_META, weight: 0.8689 cost: 0.0577 min: -0.3493 max: 2.4451 USE_META, weight: 0.9051 cost: -0.0548 min: -0.3493 max: 2.4451 USE_META, weight: 0.9070 cost: -0.0607 min: -0.3493 max: 2.4451 USE_META, weight: 0.8494 cost: 0.1183 min: -0.3493 max: 2.4451 USE_META, weight: 0.9356 cost: -0.1495 min: -0.3493 max: 2.4451 USE_META, weight: 0.8588 cost: 0.0892 min: -0.3493 max: 2.4451 USE_META, weight: 0.8273 cost: 0.1868 min: -0.3493 max: 2.4451 USE_META, weight: 0.8171 cost: 0.2187 min: -0.3493 max: 2.4451 USE_META, weight: 0.8128 cost: 0.2320 min: -0.3493 max: 2.4451 USE_META, weight: 0.9741 cost: -0.2689 min: -0.3493 max: 2.4451 USE_META, weight: 0.9675 cost: -0.2483 min: -0.3493 max: 2.4451 USE_META, weight: 0.9684 cost: -0.2513 min: -0.3493 max: 2.4451 USE_META, weight: 0.9793 cost: -0.2849 min: -0.3493 max: 2.4451 USE_META, weight: 0.9753 cost: -0.2725 min: -0.3493 max: 2.4451 USE_META, weight: 0.9782 cost: -0.2815 min: -0.3493 max: 2.4451 USE_META, weight: 0.9896 cost: -0.3169 min: -0.3493 max: 2.4451 USE_META, weight: 0.9930 cost: -0.3275 min: -0.3493 max: 2.4451 USE_META, weight: 0.9567 cost: -0.2149 min: -0.3493 max: 2.4451 USE_META, weight: 0.9151 cost: -0.0857 min: -0.3493 max: 2.4451 USE_META, weight: 0.8963 cost: -0.0275 min: -0.3493 max: 2.4451 USE_META, weight: 0.8841 cost: 0.0106 min: -0.3493 max: 2.4451 USE_META, weight: 0.8635 cost: 0.0746 min: -0.3493 max: 2.4451 USE_META, weight: 0.9736 cost: -0.2674 min: -0.3493 max: 2.4451 USE_META, weight: 0.8702 cost: 0.0537 min: -0.3493 max: 2.4451 USE_META, weight: 0.8666 cost: 0.0649 min: -0.3493 max: 2.4451 USE_META, weight: 0.8746 cost: 0.0401 min: -0.3493 max: 2.4451 USE_META, weight: 0.8710 cost: 0.0514 min: -0.3493 max: 2.4451 USE_META, weight: 0.4813 cost: 1.2613 min: -0.3493 max: 2.4451 USE_META, weight: 0.9750 cost: -0.2718 min: -0.3493 max: 2.4451 USE_META, weight: 0.9276 cost: -0.1246 min: -0.3493 max: 2.4451 USE_META, weight: 0.9274 cost: -0.1239 min: -0.3493 max: 2.4451 USE_META, weight: 0.9733 cost: -0.2665 min: -0.3493 max: 2.4451 USE_META, weight: 0.9530 cost: -0.2035 min: -0.3493 max: 2.4451 USE_META, weight: 0.9544 cost: -0.2077 min: -0.3493 max: 2.4451 USE_META, weight: 0.9530 cost: -0.2035 min: -0.3493 max: 2.4451 USE_META, weight: 0.9733 cost: -0.2665 min: -0.3493 max: 2.4451 USE_META, weight: 0.9314 cost: -0.1362 min: -0.3493 max: 2.4451 USE_META, weight: 0.9274 cost: -0.1239 min: -0.3493 max: 2.4451 USE_META, weight: 0.9868 cost: -0.3082 min: -0.3493 max: 2.4451 USE_META, weight: 0.9694 cost: -0.2544 min: -0.3493 max: 2.4451 USE_META, weight: 0.9518 cost: -0.1995 min: -0.3493 max: 2.4451 USE_META, weight: 0.9568 cost: -0.2151 min: -0.3493 max: 2.4451 USE_META, weight: 0.8799 cost: 0.0236 min: -0.3493 max: 2.4451 USE_META, weight: 0.9736 cost: -0.2674 min: -0.3493 max: 2.4451 USE_META, weight: 0.4163 cost: 1.4629 min: -0.3493 max: 2.4451 USE_META, weight: 0.4179 cost: 1.4579 min: -0.3493 max: 2.4451 USE_META, weight: 0.4186 cost: 1.4558 min: -0.3493 max: 2.4451 USE_META, weight: 0.4130 cost: 1.4734 min: -0.3493 max: 2.4451 USE_META, weight: 0.4137 cost: 1.4712 min: -0.3493 max: 2.4451 USE_META, weight: 0.4139 cost: 1.4706 min: -0.3493 max: 2.4451 USE_META, weight: 0.2975 cost: 1.8320 min: -0.3493 max: 2.4451 USE_META, weight: 0.5125 cost: 1.1644 min: -0.3493 max: 2.4451 USE_META, weight: 0.4165 cost: 1.4623 min: -0.3493 max: 2.4451 USE_META, weight: 0.4168 cost: 1.4615 min: -0.3493 max: 2.4451 USE_META, weight: 0.9699 cost: -0.2557 min: -0.3493 max: 2.4451 USE_META, weight: 0.9116 cost: -0.0749 min: -0.3493 max: 2.4451 USE_META, weight: 0.9522 cost: -0.2007 min: -0.3493 max: 2.4451 USE_META, weight: 0.9207 cost: -0.1031 min: -0.3493 max: 2.4451 USE_META, weight: 0.9144 cost: -0.0836 min: -0.3493 max: 2.4451 USE_META, weight: 0.9384 cost: -0.1581 min: -0.3493 max: 2.4451 USE_META, weight: 0.9655 cost: -0.2421 min: -0.3493 max: 2.4451 USE_META, weight: 0.9681 cost: -0.2501 min: -0.3493 max: 2.4451 USE_META, weight: 0.9641 cost: -0.2378 min: -0.3493 max: 2.4451 USE_META, weight: 0.8974 cost: -0.0308 min: -0.3493 max: 2.4451 USE_META, weight: 0.9261 cost: -0.1197 min: -0.3493 max: 2.4451 USE_META, weight: 0.9558 cost: -0.2119 min: -0.3493 max: 2.4451 USE_META, weight: 0.8592 cost: 0.0879 min: -0.3493 max: 2.4451 USE_META, weight: 0.8563 cost: 0.0970 min: -0.3493 max: 2.4451 USE_META, weight: 0.8545 cost: 0.1025 min: -0.3493 max: 2.4451 USE_META, weight: 0.9697 cost: -0.2552 min: -0.3493 max: 2.4451 USE_META, weight: 0.9727 cost: -0.2647 min: -0.3493 max: 2.4451 USE_META, weight: 0.9560 cost: -0.2126 min: -0.3493 max: 2.4451 USE_META, weight: 0.9783 cost: -0.2818 min: -0.3493 max: 2.4451 USE_META, weight: 0.9803 cost: -0.2880 min: -0.3493 max: 2.4451 USE_META, weight: 0.9687 cost: -0.2522 min: -0.3493 max: 2.4451 USE_META, weight: 0.9635 cost: -0.2360 min: -0.3493 max: 2.4451 USE_META, weight: 0.9488 cost: -0.1903 min: -0.3493 max: 2.4451 USE_META, weight: 0.9275 cost: -0.1241 min: -0.3493 max: 2.4451 USE_META, weight: 0.5823 cost: 0.9475 min: -0.3493 max: 2.4451 USE_META, weight: 0.7019 cost: 0.5764 min: -0.3493 max: 2.4451 USE_META, weight: 0.9767 cost: -0.2770 min: -0.3493 max: 2.4451 USE_META, weight: 0.9667 cost: -0.2459 min: -0.3493 max: 2.4451 USE_META, weight: 0.9346 cost: -0.1462 min: -0.3493 max: 2.4451 USE_META, weight: 0.7881 cost: 0.3087 min: -0.3493 max: 2.4451 USE_META, weight: 0.7752 cost: 0.3486 min: -0.3493 max: 2.4451 USE_META, weight: 0.9577 cost: -0.2181 min: -0.3493 max: 2.4451 USE_META, weight: 0.9622 cost: -0.2318 min: -0.3493 max: 2.4451 USE_META, weight: 0.9643 cost: -0.2384 min: -0.3493 max: 2.4451 USE_META, weight: 0.9511 cost: -0.1976 min: -0.3493 max: 2.4451 USE_META, weight: 0.8484 cost: 0.1214 min: -0.3493 max: 2.4451 USE_META, weight: 0.9393 cost: -0.1608 min: -0.3493 max: 2.4451 USE_META, weight: 0.4800 cost: 1.2653 min: -0.3493 max: 2.4451 USE_META, weight: 0.4816 cost: 1.2602 min: -0.3493 max: 2.4451 USE_META, weight: 0.4816 cost: 1.2604 min: -0.3493 max: 2.4451 USE_META, weight: 0.4818 cost: 1.2595 min: -0.3493 max: 2.4451 USE_META, weight: 0.4806 cost: 1.2635 min: -0.3493 max: 2.4451 USE_META, weight: 0.4803 cost: 1.2644 min: -0.3493 max: 2.4451 USE_META, weight: 0.4807 cost: 1.2631 min: -0.3493 max: 2.4451 USE_META, weight: 0.4801 cost: 1.2648 min: -0.3493 max: 2.4451 USE_META, weight: 0.4812 cost: 1.2614 min: -0.3493 max: 2.4451 USE_META, weight: 0.4803 cost: 1.2643 min: -0.3493 max: 2.4451 USE_META, weight: 0.9420 cost: -0.1693 min: -0.3493 max: 2.4451 USE_META, weight: 0.9619 cost: -0.2311 min: -0.3493 max: 2.4451 USE_META, weight: 0.9283 cost: -0.1266 min: -0.3493 max: 2.4451 USE_META, weight: 0.8908 cost: -0.0102 min: -0.3493 max: 2.4451 USE_META, weight: 0.8792 cost: 0.0257 min: -0.3493 max: 2.4451 USE_META, weight: 0.9803 cost: -0.2880 min: -0.3493 max: 2.4451 USE_META, weight: 0.9186 cost: -0.0965 min: -0.3493 max: 2.4451 USE_META, weight: 0.9053 cost: -0.0554 min: -0.3493 max: 2.4451 USE_META, weight: 0.7897 cost: 0.3038 min: -0.3493 max: 2.4451 USE_META, weight: 0.7862 cost: 0.3146 min: -0.3493 max: 2.4451 USE_META, weight: 0.9782 cost: -0.2818 min: -0.3493 max: 2.4451 USE_META, weight: 0.9186 cost: -0.0965 min: -0.3493 max: 2.4451 USE_META, weight: 0.8994 cost: -0.0371 min: -0.3493 max: 2.4451 USE_META, weight: 0.7848 cost: 0.3188 min: -0.3493 max: 2.4451 USE_META, weight: 0.7887 cost: 0.3069 min: -0.3493 max: 2.4451 USE_META, weight: 0.9759 cost: -0.2745 min: -0.3493 max: 2.4451 USE_META, weight: 0.9191 cost: -0.0982 min: -0.3493 max: 2.4451 USE_META, weight: 0.9026 cost: -0.0468 min: -0.3493 max: 2.4451 USE_META, weight: 0.7847 cost: 0.3193 min: -0.3493 max: 2.4451 USE_META, weight: 0.7862 cost: 0.3146 min: -0.3493 max: 2.4451 USE_META, weight: 0.4803 cost: 1.2644 min: -0.3493 max: 2.4451 USE_META, weight: 0.4800 cost: 1.2653 min: -0.3493 max: 2.4451 USE_META, weight: 0.4813 cost: 1.2613 min: -0.3493 max: 2.4451 USE_META, weight: 0.4821 cost: 1.2588 min: -0.3493 max: 2.4451 USE_META, weight: 0.4804 cost: 1.2639 min: -0.3493 max: 2.4451 USE_META, weight: 0.9812 cost: -0.2908 min: -0.3493 max: 2.4451 USE_META, weight: 0.4803 cost: 1.2644 min: -0.3493 max: 2.4451 USE_META, weight: 0.4800 cost: 1.2653 min: -0.3493 max: 2.4451 USE_META, weight: 0.4813 cost: 1.2613 min: -0.3493 max: 2.4451 USE_META, weight: 0.4821 cost: 1.2588 min: -0.3493 max: 2.4451 USE_META, weight: 0.4804 cost: 1.2639 min: -0.3493 max: 2.4451 USE_META, weight: 0.9890 cost: -0.3151 min: -0.3493 max: 2.4451 USE_META, weight: 0.9893 cost: -0.3160 min: -0.3493 max: 2.4451 USE_META, weight: 0.9832 cost: -0.2971 min: -0.3493 max: 2.4451 USE_META, weight: 0.9829 cost: -0.2961 min: -0.3493 max: 2.4451 USE_META, weight: 1.0000 cost: -0.3493 min: -0.3493 max: 2.4451 USE_META, weight: 0.9785 cost: -0.2824 min: -0.3493 max: 2.4451 USE_META, weight: 0.9725 cost: -0.2639 min: -0.3493 max: 2.4451 USE_META, weight: 0.4800 cost: 1.2653 min: -0.3493 max: 2.4451 USE_META, weight: 0.4807 cost: 1.2630 min: -0.3493 max: 2.4451 USE_META, weight: 0.4821 cost: 1.2588 min: -0.3493 max: 2.4451 USE_META, weight: 0.4816 cost: 1.2602 min: -0.3493 max: 2.4451 USE_META, weight: 0.4762 cost: 1.2771 min: -0.3493 max: 2.4451 USE_META, weight: 0.7920 cost: 0.2966 min: -0.3493 max: 2.4451 USE_META, weight: 0.7879 cost: 0.3091 min: -0.3493 max: 2.4451 USE_META, weight: 0.7897 cost: 0.3038 min: -0.3493 max: 2.4451 USE_META, weight: 0.7833 cost: 0.3234 min: -0.3493 max: 2.4451 USE_META, weight: 0.7940 cost: 0.2904 min: -0.3493 max: 2.4451 USE_META, weight: 0.2089 cost: 2.1069 min: -0.3493 max: 2.4451 USE_META, weight: 0.2013 cost: 2.1306 min: -0.3493 max: 2.4451 USE_META, weight: 0.1177 cost: 2.3902 min: -0.3493 max: 2.4451 USE_META, weight: 0.1161 cost: 2.3950 min: -0.3493 max: 2.4451 USE_META, weight: 0.1000 cost: 2.4451 min: -0.3493 max: 2.4451 USE_META, weight: 0.8983 cost: -0.0335 min: -0.3493 max: 2.4451 USE_META, weight: 0.8939 cost: -0.0200 min: -0.3493 max: 2.4451 USE_META, weight: 0.7667 cost: 0.3751 min: -0.3493 max: 2.4451 USE_META, weight: 0.3146 cost: 1.7787 min: -0.3493 max: 2.4451 USE_META, weight: 0.4889 cost: 1.2375 min: -0.3493 max: 2.4451 USE_META, weight: 0.9207 cost: -0.1032 min: -0.3493 max: 2.4451 USE_META, weight: 0.9207 cost: -0.1032 min: -0.3493 max: 2.4451 USE_META, weight: 0.9181 cost: -0.0951 min: -0.3493 max: 2.4451 USE_META, weight: 0.9176 cost: -0.0933 min: -0.3493 max: 2.4451 USE_META, weight: 0.8522 cost: 0.1095 min: -0.3493 max: 2.4451 USE_META, weight: 0.9486 cost: -0.1897 min: -0.3493 max: 2.4451 USE_META, weight: 0.9528 cost: -0.2029 min: -0.3493 max: 2.4451 USE_META, weight: 0.9034 cost: -0.0494 min: -0.3493 max: 2.4451 USE_META, weight: 0.9603 cost: -0.2259 min: -0.3493 max: 2.4451 USE_META, weight: 0.8512 cost: 0.1128 min: -0.3493 max: 2.4451 USE_META, weight: 0.8074 cost: 0.2488 min: -0.3493 max: 2.4451 USE_META, weight: 0.8273 cost: 0.1869 min: -0.3493 max: 2.4451 USE_META, weight: 0.9707 cost: -0.2584 min: -0.3493 max: 2.4451 USE_EVALUE, weight: 0.9975 eval: 0.1880 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9975 eval: 0.1880 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9975 eval: 0.1880 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.6333 eval: 27.7060 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.6333 eval: 27.7060 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.6333 eval: 27.7060 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9989 eval: 0.0838 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9989 eval: 0.0838 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9989 eval: 0.0838 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9369 eval: 4.7677 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9369 eval: 4.7677 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9369 eval: 4.7677 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9954 eval: 0.3440 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9954 eval: 0.3440 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9954 eval: 0.3440 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.1000 eval: 68.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.1000 eval: 68.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.1000 eval: 68.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9943 eval: 0.4308 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9943 eval: 0.4308 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9943 eval: 0.4308 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9871 eval: 0.9737 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9871 eval: 0.9737 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9871 eval: 0.9737 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9782 eval: 1.6496 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9782 eval: 1.6496 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9782 eval: 1.6496 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.7260 eval: 20.7000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.7260 eval: 20.7000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.7260 eval: 20.7000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9727 eval: 2.0623 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9727 eval: 2.0623 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9727 eval: 2.0623 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9738 eval: 1.9808 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9738 eval: 1.9808 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9738 eval: 1.9808 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9921 eval: 0.5953 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9921 eval: 0.5953 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9921 eval: 0.5953 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9867 eval: 1.0038 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9867 eval: 1.0038 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9867 eval: 1.0038 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9815 eval: 1.4003 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9815 eval: 1.4003 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9815 eval: 1.4003 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.6996 eval: 22.7000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.6996 eval: 22.7000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.6996 eval: 22.7000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9832 eval: 1.2659 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9832 eval: 1.2659 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9832 eval: 1.2659 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9318 eval: 5.1500 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9318 eval: 5.1500 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9318 eval: 5.1500 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9954 eval: 0.3454 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9954 eval: 0.3454 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9954 eval: 0.3454 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9817 eval: 1.3851 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9817 eval: 1.3851 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.9817 eval: 1.3851 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.5659 eval: 32.8000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.5659 eval: 32.8000 min: 0.0000 max: 68.0000 USE_EVALUE, weight: 0.5659 eval: 32.8000 min: 0.0000 max: 68.0000 Number of contacts in models: 255 Number of contacts in alignments: 81 NUMB_ALIGNS: 81 Adding 10837 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -445.4140, CN propb: -445.4140 weights: 0.3190 constraints: 953 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 953 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 953 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 9884 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 9884 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 10837 # command: