# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0377/ # command:# Making conformation for sequence T0377 numbered 1 through 101 Created new target T0377 from T0377.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0377/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0377//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0377/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0377//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0377/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0377/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0377/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ta9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ta9A expands to /projects/compbio/data/pdb/1ta9.pdb.gz 1ta9A:# T0377 read from 1ta9A/merged-good-all-a2m # 1ta9A read from 1ta9A/merged-good-all-a2m # adding 1ta9A to template set # found chain 1ta9A in template set T0377 4 :LYLIFYD 1ta9A 93 :SAVVLAD # choosing archetypes in rotamer library T0377 14 :DNLR 1ta9A 100 :QNVW T0377 18 :NRVAEFLKKKGLDRI 1ta9A 108 :NKIVDSLSQNGMTVT T0377 34 :YSVFMGDLNSSRLKDVEAGL 1ta9A 123 :KLVFGGEASLVELDKLRKQC T0377 65 :DERFFI 1ta9A 143 :PDDTQV Number of specific fragments extracted= 5 number of extra gaps= 0 total=5 Number of alignments=1 # 1ta9A read from 1ta9A/merged-good-all-a2m # found chain 1ta9A in template set T0377 4 :LYLIFYD 1ta9A 93 :SAVVLAD T0377 14 :DNLR 1ta9A 100 :QNVW T0377 18 :NRVAEFLKKKGLD 1ta9A 108 :NKIVDSLSQNGMT T0377 32 :IQYSVFMGDLNSSRLKDVEAGLK 1ta9A 121 :VTKLVFGGEASLVELDKLRKQCP T0377 65 :DE 1ta9A 144 :DD T0377 80 :FRERIVIGY 1ta9A 146 :TQVIIGVGG Number of specific fragments extracted= 6 number of extra gaps= 0 total=11 Number of alignments=2 # 1ta9A read from 1ta9A/merged-good-all-a2m # found chain 1ta9A in template set T0377 4 :LYLIFYD 1ta9A 93 :SAVVLAD T0377 14 :DNLR 1ta9A 100 :QNVW T0377 18 :NRVAEFLKKKGLDRIQ 1ta9A 108 :NKIVDSLSQNGMTVTK T0377 35 :SVFMGDLNSSRLKDVEAGLK 1ta9A 124 :LVFGGEASLVELDKLRKQCP T0377 66 :ERFFILI 1ta9A 144 :DDTQVII Number of specific fragments extracted= 5 number of extra gaps= 0 total=16 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pm9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0377/1pm9A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0377/1pm9A/merged-good-all-a2m.gz for input Trying 1pm9A/merged-good-all-a2m Error: Couldn't open file 1pm9A/merged-good-all-a2m or 1pm9A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1t8qA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1t8qA expands to /projects/compbio/data/pdb/1t8q.pdb.gz 1t8qA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0377 read from 1t8qA/merged-good-all-a2m # 1t8qA read from 1t8qA/merged-good-all-a2m # adding 1t8qA to template set # found chain 1t8qA in template set T0377 16 :LRNRVAEFLKKKGLD 1t8qA 185 :IAAKTLEVLKKYGYT T0377 36 :VFM 1t8qA 205 :VYL T0377 45 :RLKDVEAGL 1t8qA 214 :ELKRIKNEL T0377 57 :GNRKK 1t8qA 223 :EPKMG T0377 66 :ERFFILIVPITENQFRERIVI 1t8qA 228 :MELNLVQLIAYTDWNETQQKQ T0377 89 :SGS 1t8qA 249 :PDG Number of specific fragments extracted= 6 number of extra gaps= 0 total=22 Number of alignments=4 # 1t8qA read from 1t8qA/merged-good-all-a2m # found chain 1t8qA in template set T0377 16 :LRNRVAEFLKKKGLD 1t8qA 185 :IAAKTLEVLKKYGYT T0377 31 :RIQY 1t8qA 206 :YLQC T0377 45 :RLKDVEAGLK 1t8qA 214 :ELKRIKNELE Number of specific fragments extracted= 3 number of extra gaps= 0 total=25 Number of alignments=5 # 1t8qA read from 1t8qA/merged-good-all-a2m # found chain 1t8qA in template set T0377 16 :LRNRVAEFLKKKGLD 1t8qA 185 :IAAKTLEVLKKYGYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=26 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1fmcA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0377 read from 1fmcA/merged-good-all-a2m # 1fmcA read from 1fmcA/merged-good-all-a2m # found chain 1fmcA in training set T0377 6 :LIFYDI 1fmcA 38 :VVVSDI T0377 13 :DDNLRNRVAEFLKKKGLD 1fmcA 44 :NADAANHVVDEIQQLGGQ T0377 36 :VFMGDL 1fmcA 62 :AFACRC T0377 42 :NSSRLKDVEAGLKII 1fmcA 71 :SEQELSALADFAISK Number of specific fragments extracted= 4 number of extra gaps= 0 total=30 Number of alignments=6 # 1fmcA read from 1fmcA/merged-good-all-a2m # found chain 1fmcA in training set T0377 6 :LIFYDI 1fmcA 38 :VVVSDI T0377 13 :DDNLRNRVAEFLKKKGLD 1fmcA 44 :NADAANHVVDEIQQLGGQ T0377 36 :VFMGDLN 1fmcA 62 :AFACRCD T0377 43 :SSRLKDVEAGLKIIGN 1fmcA 72 :EQELSALADFAISKLG T0377 61 :KL 1fmcA 88 :KV T0377 82 :ERIVI 1fmcA 90 :DILVN Number of specific fragments extracted= 6 number of extra gaps= 0 total=36 Number of alignments=7 # 1fmcA read from 1fmcA/merged-good-all-a2m # found chain 1fmcA in training set T0377 5 :YLIFYDITDD 1fmcA 37 :SVVVSDINAD T0377 16 :LRNRVAEFLKKKGLDR 1fmcA 47 :AANHVVDEIQQLGGQA T0377 37 :FMGDL 1fmcA 63 :FACRC T0377 42 :NSSRLKDVEAGLKIIG 1fmcA 71 :SEQELSALADFAISKL T0377 66 :ERFFILIV 1fmcA 87 :GKVDILVN T0377 75 :ITENQFRERI 1fmcA 106 :MPMADFRRAY Number of specific fragments extracted= 6 number of extra gaps= 0 total=42 Number of alignments=8 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vgjA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vgjA expands to /projects/compbio/data/pdb/1vgj.pdb.gz 1vgjA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0377 read from 1vgjA/merged-good-all-a2m # 1vgjA read from 1vgjA/merged-good-all-a2m # adding 1vgjA to template set # found chain 1vgjA in template set Warning: unaligning (T0377)M3 because first residue in template chain is (1vgjA)M1 T0377 4 :LYLIFYDI 1vgjA 2 :RAFIAIDV T0377 13 :DDNLRNRVAEFLKKKG 1vgjA 10 :NESVRDSLVRAQDYIG T0377 37 :FMGDLNSSRLKDVEAGLKIIGNRKK 1vgjA 45 :FLGEITEEQAEEIKNILKKIAEKYK T0377 65 :DER 1vgjA 70 :KHE T0377 68 :FFILIVP 1vgjA 76 :KGIGVFP T0377 76 :TENQFRERIVI 1vgjA 83 :NPNYIRVIWAG Number of specific fragments extracted= 6 number of extra gaps= 0 total=48 Number of alignments=9 # 1vgjA read from 1vgjA/merged-good-all-a2m # found chain 1vgjA in template set Warning: unaligning (T0377)M3 because first residue in template chain is (1vgjA)M1 T0377 4 :LYLIFYDI 1vgjA 2 :RAFIAIDV T0377 13 :DDNLRNRVAEFLKKKG 1vgjA 10 :NESVRDSLVRAQDYIG T0377 30 :DRIQYSV 1vgjA 37 :ENLHITL T0377 37 :FMGDLNSSRLKDVEAGLKIIGNRKKLQEDERFFILIVP 1vgjA 45 :FLGEITEEQAEEIKNILKKIAEKYKKHEVKVKGIGVFP T0377 76 :TENQFRERIV 1vgjA 83 :NPNYIRVIWA T0377 87 :G 1vgjA 93 :G Number of specific fragments extracted= 6 number of extra gaps= 0 total=54 Number of alignments=10 # 1vgjA read from 1vgjA/merged-good-all-a2m # found chain 1vgjA in template set T0377 4 :LYLIFYDITDD 1vgjA 2 :RAFIAIDVNES T0377 16 :LRNRVAEFLKKKG 1vgjA 13 :VRDSLVRAQDYIG T0377 30 :DRIQYS 1vgjA 37 :ENLHIT T0377 36 :VFMGDLNSSRLKDVEAGLKIIGNRKKLQE 1vgjA 44 :KFLGEITEEQAEEIKNILKKIAEKYKKHE T0377 68 :FFILIVPITE 1vgjA 76 :KGIGVFPNPN Number of specific fragments extracted= 5 number of extra gaps= 0 total=59 Number of alignments=11 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zpwX/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zpwX expands to /projects/compbio/data/pdb/1zpw.pdb.gz 1zpwX:Skipped atom 88, because occupancy 0.35 <= existing 0.650 in 1zpwX Skipped atom 91, because occupancy 0.350 <= existing 0.650 in 1zpwX Skipped atom 178, because occupancy 0.350 <= existing 0.650 in 1zpwX Skipped atom 180, because occupancy 0.350 <= existing 0.650 in 1zpwX Skipped atom 182, because occupancy 0.350 <= existing 0.650 in 1zpwX Skipped atom 184, because occupancy 0.350 <= existing 0.650 in 1zpwX Skipped atom 421, because occupancy 0.350 <= existing 0.650 in 1zpwX Skipped atom 423, because occupancy 0.350 <= existing 0.650 in 1zpwX Skipped atom 425, because occupancy 0.350 <= existing 0.650 in 1zpwX Skipped atom 427, because occupancy 0.350 <= existing 0.650 in 1zpwX Skipped atom 429, because occupancy 0.350 <= existing 0.650 in 1zpwX Skipped atom 431, because occupancy 0.350 <= existing 0.650 in 1zpwX # T0377 read from 1zpwX/merged-good-all-a2m # 1zpwX read from 1zpwX/merged-good-all-a2m # adding 1zpwX to template set # found chain 1zpwX in template set Warning: unaligning (T0377)N98 because last residue in template chain is (1zpwX)E83 T0377 2 :AMLYLIFYDITDDNLRNRVAEFLKKKG 1zpwX 3 :KRLYAVAYDIPDDTRRVKLANLLKSYG T0377 30 :DRIQYSVFMGDLNSSRLKDVEAGLK 1zpwX 30 :ERVQLSVFECYLDERLLEDLRRRAR T0377 61 :KLQEDERFFILIVPITENQ 1zpwX 55 :RLLDLGQDALRIYPVAGQV T0377 89 :SGSEREEKS 1zpwX 74 :EVLGVGPLP Number of specific fragments extracted= 4 number of extra gaps= 0 total=63 Number of alignments=12 # 1zpwX read from 1zpwX/merged-good-all-a2m # found chain 1zpwX in template set Warning: unaligning (T0377)R93 because last residue in template chain is (1zpwX)E83 T0377 1 :MAMLYLIFYDITDDNLRNRVAEFLKKKG 1zpwX 2 :GKRLYAVAYDIPDDTRRVKLANLLKSYG T0377 30 :DRIQYSVFMGDLNSSRLKDVEAGLK 1zpwX 30 :ERVQLSVFECYLDERLLEDLRRRAR T0377 61 :KLQEDERFFILIVPITENQF 1zpwX 55 :RLLDLGQDALRIYPVAGQVE T0377 85 :VIGYSGSE 1zpwX 75 :VLGVGPLP Number of specific fragments extracted= 4 number of extra gaps= 0 total=67 Number of alignments=13 # 1zpwX read from 1zpwX/merged-good-all-a2m # found chain 1zpwX in template set Warning: unaligning (T0377)K96 because last residue in template chain is (1zpwX)E83 T0377 2 :AMLYLIFYDITDDNLRNRVAEFLKKKG 1zpwX 3 :KRLYAVAYDIPDDTRRVKLANLLKSYG T0377 30 :DRIQYSVFMGDLNSSRLKDVEAGLK 1zpwX 30 :ERVQLSVFECYLDERLLEDLRRRAR T0377 61 :KLQEDERFFILIVPITEN 1zpwX 55 :RLLDLGQDALRIYPVAGQ T0377 86 :IGYSGSEREE 1zpwX 73 :VEVLGVGPLP Number of specific fragments extracted= 4 number of extra gaps= 0 total=71 Number of alignments=14 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1han/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1han expands to /projects/compbio/data/pdb/1han.pdb.gz 1han:Warning: there is no chain 1han will retry with 1hanA # T0377 read from 1han/merged-good-all-a2m # 1han read from 1han/merged-good-all-a2m # adding 1han to template set # found chain 1han in template set T0377 2 :AMLYLIFYDITDDNLRNRVAEFLKKKGLD 1han 58 :DDLAFAGYEVADAAGLAQMADKLKQAGIA T0377 38 :MGDLNSSRLKDV 1han 87 :VTTGDASLARRR T0377 61 :KLQ 1han 99 :GVT T0377 69 :FILIVPITEN 1han 102 :GLITFADPFG T0377 81 :RERIVIGYSGSEREEKS 1han 112 :LPLEIYYGASEVFEKPF Number of specific fragments extracted= 5 number of extra gaps= 0 total=76 Number of alignments=15 # 1han read from 1han/merged-good-all-a2m # found chain 1han in template set T0377 3 :MLYLIFYDITDDNLRNRVAEFLKKKGLD 1han 59 :DLAFAGYEVADAAGLAQMADKLKQAGIA T0377 38 :MGDLNSSRLKDV 1han 87 :VTTGDASLARRR T0377 61 :KLQ 1han 99 :GVT T0377 69 :FILIVPITEN 1han 102 :GLITFADPFG T0377 81 :RERIVI 1han 112 :LPLEIY T0377 87 :GYSGSEREE 1han 119 :GASEVFEKP Number of specific fragments extracted= 6 number of extra gaps= 0 total=82 Number of alignments=16 # 1han read from 1han/merged-good-all-a2m # found chain 1han in template set T0377 4 :LYLIFYDITDDNLRNRVAEFLKKKGLDR 1han 60 :LAFAGYEVADAAGLAQMADKLKQAGIAV T0377 39 :GDLNSSRLKDV 1han 88 :TTGDASLARRR T0377 62 :LQEDERFFILIVP 1han 106 :FADPFGLPLEIYY Number of specific fragments extracted= 3 number of extra gaps= 0 total=85 Number of alignments=17 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lkdA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1lkdA expands to /projects/compbio/data/pdb/1lkd.pdb.gz 1lkdA:# T0377 read from 1lkdA/merged-good-all-a2m # 1lkdA read from 1lkdA/merged-good-all-a2m # adding 1lkdA to template set # found chain 1lkdA in template set T0377 3 :MLYLIFYDITDDNLRNRVAEFLKKKGLD 1lkdA 59 :DLAFAGYEVADAAGLAQMADKLKQAGIA T0377 38 :MGDLNSSRLKDV 1lkdA 87 :VTTGDASLARRR T0377 61 :KLQ 1lkdA 99 :GVT T0377 69 :FILIVPITEN 1lkdA 102 :GLITFADPFG T0377 81 :RERIVIGYSGSEREEKS 1lkdA 112 :LPLEIYYGASEVFEKPF Number of specific fragments extracted= 5 number of extra gaps= 0 total=90 Number of alignments=18 # 1lkdA read from 1lkdA/merged-good-all-a2m # found chain 1lkdA in template set T0377 4 :LYLIFYDITDDNLRNRVAEFLKKKGLD 1lkdA 60 :LAFAGYEVADAAGLAQMADKLKQAGIA T0377 38 :MGDLNSSRLKDV 1lkdA 87 :VTTGDASLARRR T0377 61 :KLQ 1lkdA 99 :GVT T0377 69 :FILIVPITEN 1lkdA 102 :GLITFADPFG T0377 81 :RERIVI 1lkdA 112 :LPLEIY T0377 87 :GYSGSEREE 1lkdA 119 :GASEVFEKP Number of specific fragments extracted= 6 number of extra gaps= 0 total=96 Number of alignments=19 # 1lkdA read from 1lkdA/merged-good-all-a2m # found chain 1lkdA in template set T0377 6 :LIFYDITDDNLRNRVAEFLKKKGLDR 1lkdA 62 :FAGYEVADAAGLAQMADKLKQAGIAV T0377 39 :GDLNSSRLKDV 1lkdA 88 :TTGDASLARRR T0377 62 :LQEDERFFILIVP 1lkdA 106 :FADPFGLPLEIYY Number of specific fragments extracted= 3 number of extra gaps= 0 total=99 Number of alignments=20 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1varA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0377/1varA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0377/1varA/merged-good-all-a2m.gz for input Trying 1varA/merged-good-all-a2m Error: Couldn't open file 1varA/merged-good-all-a2m or 1varA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zspA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0377/1zspA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0377/1zspA/merged-good-all-a2m.gz for input Trying 1zspA/merged-good-all-a2m Error: Couldn't open file 1zspA/merged-good-all-a2m or 1zspA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1m7bA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1m7bA expands to /projects/compbio/data/pdb/1m7b.pdb.gz 1m7bA:# T0377 read from 1m7bA/merged-good-all-a2m # 1m7bA read from 1m7bA/merged-good-all-a2m # adding 1m7bA to template set # found chain 1m7bA in template set T0377 3 :MLYLIFYDITDDNLRNRVAEFLKKK 1m7bA 96 :DAVLICFDISRPETLDSVLKKWKGE T0377 29 :LD 1m7bA 121 :IQ T0377 51 :AGLK 1m7bA 123 :EFCP T0377 61 :K 1m7bA 127 :N T0377 81 :RERIVIGYSGSERE 1m7bA 128 :TKMLLVGCKSDLRT Number of specific fragments extracted= 5 number of extra gaps= 0 total=104 Number of alignments=21 # 1m7bA read from 1m7bA/merged-good-all-a2m # found chain 1m7bA in template set T0377 4 :LYLIFYDITDDNLRNRVAEFLKKK 1m7bA 97 :AVLICFDISRPETLDSVLKKWKGE T0377 49 :VEAGLK 1m7bA 121 :IQEFCP T0377 61 :KL 1m7bA 127 :NT T0377 82 :ERIVIGYSGSEREE 1m7bA 129 :KMLLVGCKSDLRTD Number of specific fragments extracted= 4 number of extra gaps= 0 total=108 Number of alignments=22 # 1m7bA read from 1m7bA/merged-good-all-a2m # found chain 1m7bA in template set T0377 4 :LYLIFYDITDDNLRNRVAEFLKKKG 1m7bA 97 :AVLICFDISRPETLDSVLKKWKGEI T0377 30 :D 1m7bA 122 :Q T0377 42 :NSSRLKDVE 1m7bA 142 :DVSTLVELS Number of specific fragments extracted= 3 number of extra gaps= 0 total=111 Number of alignments=23 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1oz9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1oz9A expands to /projects/compbio/data/pdb/1oz9.pdb.gz 1oz9A:# T0377 read from 1oz9A/merged-good-all-a2m # 1oz9A read from 1oz9A/merged-good-all-a2m # adding 1oz9A to template set # found chain 1oz9A in template set T0377 11 :ITDDNLRNRVAEFLKKKGLDRIQYSVF 1oz9A 20 :VRKDKIEKWAELALSALGLNNVELSVY T0377 42 :NSSRLKDVEAGLK 1oz9A 49 :DDQEIRELNKTYR T0377 63 :QEDERFFILIVPITE 1oz9A 62 :KKDKPTDVLSFPMGE T0377 78 :NQFRERIV 1oz9A 79 :GGYKILGD Number of specific fragments extracted= 4 number of extra gaps= 0 total=115 Number of alignments=24 # 1oz9A read from 1oz9A/merged-good-all-a2m # found chain 1oz9A in template set T0377 11 :ITDDNLRNRVAEFLKKKGLDRIQYSVFMG 1oz9A 20 :VRKDKIEKWAELALSALGLNNVELSVYIT T0377 42 :NSSRLKDVEAGLK 1oz9A 49 :DDQEIRELNKTYR T0377 61 :K 1oz9A 62 :K T0377 64 :EDERFFILIVPITE 1oz9A 63 :KDKPTDVLSFPMGE T0377 78 :N 1oz9A 80 :G T0377 79 :QFRERIV 1oz9A 83 :ILGDVVI Number of specific fragments extracted= 6 number of extra gaps= 0 total=121 Number of alignments=25 # 1oz9A read from 1oz9A/merged-good-all-a2m # found chain 1oz9A in template set T0377 11 :ITDDNLRNRVAEFLKKKGLDRIQYSVF 1oz9A 20 :VRKDKIEKWAELALSALGLNNVELSVY T0377 42 :NSSRLKDVEAGLK 1oz9A 49 :DDQEIRELNKTYR T0377 63 :QEDERFFILIVPITE 1oz9A 62 :KKDKPTDVLSFPMGE Number of specific fragments extracted= 3 number of extra gaps= 0 total=124 Number of alignments=26 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1uw1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1uw1A expands to /projects/compbio/data/pdb/1uw1.pdb.gz 1uw1A:# T0377 read from 1uw1A/merged-good-all-a2m # 1uw1A read from 1uw1A/merged-good-all-a2m # adding 1uw1A to template set # found chain 1uw1A in template set Warning: unaligning (T0377)N42 because first residue in template chain is (1uw1A)D7 T0377 43 :SSRLKDVEAGLK 1uw1A 8 :DKKTNWLKRIYR T0377 57 :GNRKKLQEDERF 1uw1A 20 :VRPCVKCKVAPR T0377 69 :FILIVPITENQFRE 1uw1A 39 :HLRIYNMCKTCFNN Number of specific fragments extracted= 3 number of extra gaps= 0 total=127 Number of alignments=27 # 1uw1A read from 1uw1A/merged-good-all-a2m # found chain 1uw1A in template set Warning: unaligning (T0377)N42 because first residue in template chain is (1uw1A)D7 T0377 43 :SSRLKDVEAGLKII 1uw1A 8 :DKKTNWLKRIYRVR T0377 57 :GNRKKLQEDER 1uw1A 28 :VAPRNWKVKNK T0377 69 :FILIVPITENQFRERIVIGYSGSEREEKSN 1uw1A 39 :HLRIYNMCKTCFNNSIDIGDDTYHGHDDWL Number of specific fragments extracted= 3 number of extra gaps= 0 total=130 Number of alignments=28 # 1uw1A read from 1uw1A/merged-good-all-a2m # found chain 1uw1A in template set Warning: unaligning (T0377)N42 because first residue in template chain is (1uw1A)D7 T0377 43 :SSRLKDVEAGLKI 1uw1A 8 :DKKTNWLKRIYRV T0377 59 :RKKLQEDERFFILIVPITENQFRERIVIGYSGSEREEKS 1uw1A 29 :APRNWKVKNKHLRIYNMCKTCFNNSIDIGDDTYHGHDDW Number of specific fragments extracted= 2 number of extra gaps= 0 total=132 Number of alignments=29 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1szxA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0377/1szxA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0377/1szxA/merged-good-all-a2m.gz for input Trying 1szxA/merged-good-all-a2m Error: Couldn't open file 1szxA/merged-good-all-a2m or 1szxA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vdxA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vdxA expands to /projects/compbio/data/pdb/1vdx.pdb.gz 1vdxA:# T0377 read from 1vdxA/merged-good-all-a2m # 1vdxA read from 1vdxA/merged-good-all-a2m # adding 1vdxA to template set # found chain 1vdxA in template set Warning: unaligning (T0377)M3 because first residue in template chain is (1vdxA)M1 T0377 4 :LYLIFYDI 1vdxA 2 :RAFIAIDV T0377 13 :DDNLRNRVAEFLKKKG 1vdxA 10 :NESVRDSLVRAQDYIG T0377 37 :FMGDLNSSRLKDVEAGLKIIGNRKK 1vdxA 45 :FLGEITEEQAEEIKNILKKIAEKYK T0377 65 :DERFFIL 1vdxA 70 :KHEVKVK T0377 72 :IVP 1vdxA 80 :VFP T0377 76 :TENQFRERIV 1vdxA 83 :NPNYIRVIWA T0377 87 :GYSG 1vdxA 93 :GIEN Number of specific fragments extracted= 7 number of extra gaps= 0 total=139 Number of alignments=30 # 1vdxA read from 1vdxA/merged-good-all-a2m # found chain 1vdxA in template set Warning: unaligning (T0377)M3 because first residue in template chain is (1vdxA)M1 T0377 4 :LYLIFYDI 1vdxA 2 :RAFIAIDV T0377 13 :DDNLRNRVAEFLKKKG 1vdxA 10 :NESVRDSLVRAQDYIG T0377 30 :DRIQYSV 1vdxA 37 :ENLHITL T0377 37 :FMGDLNSSRLKDVEAGLKIIGNRKKL 1vdxA 45 :FLGEITEEQAEEIKNILKKIAEKYKK T0377 66 :ERFFIL 1vdxA 71 :HEVKVK T0377 72 :IVP 1vdxA 80 :VFP T0377 76 :TENQFRERIV 1vdxA 83 :NPNYIRVIWA T0377 87 :GYS 1vdxA 93 :GIE Number of specific fragments extracted= 8 number of extra gaps= 0 total=147 Number of alignments=31 # 1vdxA read from 1vdxA/merged-good-all-a2m # found chain 1vdxA in template set Warning: unaligning (T0377)M3 because first residue in template chain is (1vdxA)M1 T0377 4 :LYLIFYDITDD 1vdxA 2 :RAFIAIDVNES T0377 16 :LRNRVAEFLKKKG 1vdxA 13 :VRDSLVRAQDYIG T0377 30 :DRIQYS 1vdxA 37 :ENLHIT T0377 36 :VFMGDLNSSRLKDVEAGLKIIGNRKKLQE 1vdxA 44 :KFLGEITEEQAEEIKNILKKIAEKYKKHE T0377 68 :FFIL 1vdxA 73 :VKVK T0377 72 :IVPIT 1vdxA 80 :VFPNP Number of specific fragments extracted= 6 number of extra gaps= 0 total=153 Number of alignments=32 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1em1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0377/1em1A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0377/1em1A/merged-good-all-a2m.gz for input Trying 1em1A/merged-good-all-a2m Error: Couldn't open file 1em1A/merged-good-all-a2m or 1em1A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1z08A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1z08A expands to /projects/compbio/data/pdb/1z08.pdb.gz 1z08A:# T0377 read from 1z08A/merged-good-all-a2m # 1z08A read from 1z08A/merged-good-all-a2m # adding 1z08A to template set # found chain 1z08A in template set T0377 3 :MLYLIFYDITDDNLRNRV 1z08A 93 :NGAILVYDITDEDSFQKV T0377 46 :LKDVEAGLK 1z08A 114 :VKELRKMLG T0377 61 :KLQ 1z08A 123 :NEI T0377 82 :ERIVIGYSGSEREEK 1z08A 126 :CLCIVGNKIDLEKER Number of specific fragments extracted= 4 number of extra gaps= 0 total=157 Number of alignments=33 # 1z08A read from 1z08A/merged-good-all-a2m # found chain 1z08A in template set T0377 4 :LYLIFYDITDDNLRNRVA 1z08A 94 :GAILVYDITDEDSFQKVK T0377 26 :KK 1z08A 112 :NW T0377 46 :LKDVEAGLK 1z08A 114 :VKELRKMLG T0377 61 :KLQ 1z08A 123 :NEI T0377 82 :ERIVIGYSGSEREEKS 1z08A 126 :CLCIVGNKIDLEKERH Number of specific fragments extracted= 5 number of extra gaps= 0 total=162 Number of alignments=34 # 1z08A read from 1z08A/merged-good-all-a2m # found chain 1z08A in template set T0377 4 :LYLIFYDITDDNLRNRV 1z08A 94 :GAILVYDITDEDSFQKV T0377 21 :AEFLKKKG 1z08A 114 :VKELRKML T0377 30 :D 1z08A 122 :G T0377 38 :MGDLNSSRLKDVEAGL 1z08A 139 :ERHVSIQEAESYAESV Number of specific fragments extracted= 4 number of extra gaps= 0 total=166 Number of alignments=35 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gyxA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0377 read from 1gyxA/merged-good-all-a2m # 1gyxA read from 1gyxA/merged-good-all-a2m # found chain 1gyxA in training set T0377 40 :DLNSSRLKDVEAGLKIIGNRKKLQEDERFFILIVPITENQFR 1gyxA 11 :ELDEQQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=167 Number of alignments=36 # 1gyxA read from 1gyxA/merged-good-all-a2m # found chain 1gyxA in training set T0377 40 :DLNSSRLKDVEAGLKIIGNRKKLQEDERFFILIVPITENQFR 1gyxA 11 :ELDEQQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=168 Number of alignments=37 # 1gyxA read from 1gyxA/merged-good-all-a2m # found chain 1gyxA in training set T0377 39 :GDLNSSRLKDVEAGLKIIGNRKKLQEDERFFILIVPITENQFRERIV 1gyxA 10 :RELDEQQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQAIWD T0377 86 :IGYSGSEREEKS 1gyxA 61 :PQMEALIKKPGY Number of specific fragments extracted= 2 number of extra gaps= 0 total=170 Number of alignments=38 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1r2qA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0377 read from 1r2qA/merged-good-all-a2m # 1r2qA read from 1r2qA/merged-good-all-a2m # found chain 1r2qA in training set T0377 4 :LYLIFYDITDDNLRNRVA 1r2qA 95 :AAIVVYDITNEESFARAK T0377 22 :EFLKKK 1r2qA 116 :KELQRQ T0377 29 :LD 1r2qA 122 :AS T0377 39 :GDLNSSR 1r2qA 141 :RAVDFQE T0377 49 :VEAGLKI 1r2qA 148 :AQSYADD Number of specific fragments extracted= 5 number of extra gaps= 0 total=175 Number of alignments=39 # 1r2qA read from 1r2qA/merged-good-all-a2m # found chain 1r2qA in training set T0377 4 :LYLIFYDITDDNLRNRVA 1r2qA 95 :AAIVVYDITNEESFARAK T0377 22 :EFLKK 1r2qA 116 :KELQR T0377 52 :GLK 1r2qA 121 :QAS T0377 65 :DE 1r2qA 124 :PN T0377 81 :RERIVIGYSGSEREEK 1r2qA 126 :IVIALSGNKADLANKR Number of specific fragments extracted= 5 number of extra gaps= 0 total=180 Number of alignments=40 # 1r2qA read from 1r2qA/merged-good-all-a2m # found chain 1r2qA in training set T0377 4 :LYLIFYDITDDNLRNRVA 1r2qA 95 :AAIVVYDITNEESFARAK T0377 22 :EFLKK 1r2qA 116 :KELQR T0377 28 :GLDRI 1r2qA 125 :NIVIA T0377 39 :GDLNSSRLKDVEAG 1r2qA 141 :RAVDFQEAQSYADD Number of specific fragments extracted= 4 number of extra gaps= 0 total=184 Number of alignments=41 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ydyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0377 read from 1ydyA/merged-good-all-a2m # 1ydyA read from 1ydyA/merged-good-all-a2m # found chain 1ydyA in training set T0377 16 :LRNRVAEFLKKKGLD 1ydyA 185 :IAAKTLEVLKKYGYT T0377 36 :VF 1ydyA 205 :VY T0377 45 :RLKDVEAGLKIIG 1ydyA 214 :ELKRIKNELEPKM T0377 61 :KL 1ydyA 227 :GM T0377 67 :RFFILIVPITENQFRERIVIG 1ydyA 229 :ELNLVQLIAYTDWNETQQKQP T0377 89 :SGSE 1ydyA 250 :DGSW Number of specific fragments extracted= 6 number of extra gaps= 0 total=190 Number of alignments=42 # 1ydyA read from 1ydyA/merged-good-all-a2m # found chain 1ydyA in training set T0377 16 :LRNRVAEFLKKKGLD 1ydyA 185 :IAAKTLEVLKKYGYT T0377 31 :RIQY 1ydyA 206 :YLQC T0377 45 :RLKDVEAGLKIIGNR 1ydyA 214 :ELKRIKNELEPKMGM T0377 61 :KL 1ydyA 229 :EL T0377 69 :FILIVPITENQ 1ydyA 231 :NLVQLIAYTDW T0377 95 :EKS 1ydyA 242 :NET Number of specific fragments extracted= 6 number of extra gaps= 0 total=196 Number of alignments=43 # 1ydyA read from 1ydyA/merged-good-all-a2m # found chain 1ydyA in training set T0377 16 :LRNRVAEFLKKKGLD 1ydyA 185 :IAAKTLEVLKKYGYT Number of specific fragments extracted= 1 number of extra gaps= 0 total=197 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1huqA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1huqA expands to /projects/compbio/data/pdb/1huq.pdb.gz 1huqA:# T0377 read from 1huqA/merged-good-all-a2m # 1huqA read from 1huqA/merged-good-all-a2m # adding 1huqA to template set # found chain 1huqA in template set T0377 4 :LYLIFYDITDDNLRNRVA 1huqA 96 :AAIVVYDITNTDTFARAK T0377 22 :EFLKKK 1huqA 117 :KELQRQ T0377 29 :LD 1huqA 123 :AS T0377 38 :MGDLNSSRLK 1huqA 141 :KRAVEFQEAQ T0377 51 :AGLK 1huqA 151 :AYAD Number of specific fragments extracted= 5 number of extra gaps= 0 total=202 Number of alignments=44 # 1huqA read from 1huqA/merged-good-all-a2m # found chain 1huqA in template set T0377 4 :LYLIFYDITDDNLRNRVAEFL 1huqA 96 :AAIVVYDITNTDTFARAKNWV T0377 47 :KDVEAGLK 1huqA 117 :KELQRQAS T0377 65 :DE 1huqA 125 :PN T0377 81 :RERIVIGYSGSEREEK 1huqA 127 :IVIALAGNKADLASKR Number of specific fragments extracted= 4 number of extra gaps= 0 total=206 Number of alignments=45 # 1huqA read from 1huqA/merged-good-all-a2m # found chain 1huqA in template set T0377 4 :LYLIFYDITDDNLRNRVA 1huqA 96 :AAIVVYDITNTDTFARAK T0377 22 :EFLKK 1huqA 117 :KELQR T0377 28 :GLDRIQ 1huqA 126 :NIVIAL T0377 38 :MGDLNSSRLKDVEAG 1huqA 141 :KRAVEFQEAQAYADD Number of specific fragments extracted= 4 number of extra gaps= 0 total=210 Number of alignments=46 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ivyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0377/2ivyA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0377/2ivyA/merged-good-all-a2m.gz for input Trying 2ivyA/merged-good-all-a2m Error: Couldn't open file 2ivyA/merged-good-all-a2m or 2ivyA/merged-good-all-a2m.gz for input # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0377//projects/compbio/experiments/protein-predict/casp7/T0377/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0377//projects/compbio/experiments/protein-predict/casp7/T0377/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0377/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0377/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0377)I11.CB, (T0377)V20.CB) [> 4.0813 = 6.8021 < 8.8428] w=1.0000 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)V49.CB) [> 4.6378 = 7.7298 < 10.0487] w=0.8977 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)M38.CB) [> 4.3914 = 7.3190 < 9.5148] w=0.8248 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)F37.CB) [> 3.6982 = 6.1637 < 8.0128] w=0.8248 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)L24.CB) [> 4.0165 = 6.6942 < 8.7024] w=0.8125 to align # Constraint # added constraint: constraint((T0377)V20.CB, (T0377)V85.CB) [> 3.6180 = 6.0300 < 7.8390] w=0.7812 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)V20.CB) [> 3.1529 = 5.2549 < 6.8313] w=0.6938 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)S35.CB) [> 3.2465 = 5.4108 < 7.0341] w=0.6895 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)V20.CB) [> 3.2408 = 5.4013 < 7.0217] w=0.6854 to align # Constraint # added constraint: constraint((T0377)V73.CB, (T0377)I84.CB) [> 4.1207 = 6.8678 < 8.9281] w=0.6626 to align # Constraint # added constraint: constraint((T0377)V49.CB, (T0377)I70.CB) [> 3.7877 = 6.3128 < 8.2067] w=0.6511 to align # Constraint # added constraint: constraint((T0377)L4.CB, (T0377)G39.CA) [> 3.4559 = 5.7599 < 7.4879] w=0.6258 to align # Constraint # added constraint: constraint((T0377)L4.CB, (T0377)D40.CB) [> 3.7684 = 6.2806 < 8.1648] w=0.6258 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)M38.CB) [> 3.2701 = 5.4501 < 7.0852] w=0.6258 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)G39.CA) [> 3.5070 = 5.8450 < 7.5985] w=0.6258 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)L41.CB) [> 3.1730 = 5.2883 < 6.8748] w=0.6258 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)L46.CB) [> 4.1006 = 6.8344 < 8.8847] w=0.6258 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)M38.CB) [> 3.4903 = 5.8171 < 7.5623] w=0.6258 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)G39.CA) [> 4.4846 = 7.4743 < 9.7166] w=0.6258 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)V36.CB) [> 3.5619 = 5.9365 < 7.7174] w=0.6200 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)L53.CB) [> 3.7257 = 6.2095 < 8.0724] w=0.6143 to align # Constraint # added constraint: constraint((T0377)V73.CB, (T0377)E82.CB) [> 3.3887 = 5.6478 < 7.3421] w=0.5945 to align # Constraint # added constraint: constraint((T0377)I72.CB, (T0377)I84.CB) [> 3.9273 = 6.5455 < 8.5092] w=0.5945 to align # Constraint # added constraint: constraint((T0377)I72.CB, (T0377)R83.CB) [> 3.9296 = 6.5493 < 8.5141] w=0.5945 to align # Constraint # added constraint: constraint((T0377)I72.CB, (T0377)E82.CB) [> 4.2360 = 7.0600 < 9.1779] w=0.5945 to align # Constraint # added constraint: constraint((T0377)I70.CB, (T0377)V85.CB) [> 3.5269 = 5.8781 < 7.6415] w=0.5945 to align # Constraint # added constraint: constraint((T0377)L46.CB, (T0377)I72.CB) [> 3.9754 = 6.6256 < 8.6133] w=0.5888 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)I70.CB) [> 4.4170 = 7.3617 < 9.5702] w=0.5846 to align # Constraint # added constraint: constraint((T0377)D30.CB, (T0377)G39.CA) [> 4.3026 = 7.1709 < 9.3222] w=0.5846 to align # Constraint # added constraint: constraint((T0377)K54.CB, (T0377)Q63.CB) [> 4.0416 = 6.7360 < 8.7568] w=0.5827 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)V49.CB) [> 4.1091 = 6.8485 < 8.9030] w=0.5763 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)I86.CB) [> 4.3270 = 7.2117 < 9.3752] w=0.5716 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)V85.CB) [> 3.8510 = 6.4183 < 8.3438] w=0.5716 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)I86.CB) [> 3.3154 = 5.5257 < 7.1834] w=0.5716 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)I84.CB) [> 3.9627 = 6.6044 < 8.5857] w=0.5716 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)I84.CB) [> 3.3136 = 5.5226 < 7.1794] w=0.5716 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)E82.CB) [> 4.0583 = 6.7638 < 8.7929] w=0.5716 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)V36.CB) [> 4.3872 = 7.3120 < 9.5056] w=0.5510 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)V36.CB) [> 3.6009 = 6.0015 < 7.8019] w=0.5506 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)V49.CB) [> 4.4072 = 7.3453 < 9.5489] w=0.5439 to align # Constraint # added constraint: constraint((T0377)A21.CB, (T0377)R31.CB) [> 3.5910 = 5.9850 < 7.7805] w=0.5362 to align # Constraint # added constraint: constraint((T0377)L53.CB, (T0377)L62.CB) [> 3.5662 = 5.9437 < 7.7268] w=0.5321 to align # Constraint # added constraint: constraint((T0377)V73.CB, (T0377)R83.CB) [> 3.9005 = 6.5008 < 8.4511] w=0.5264 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)R83.CB) [> 4.1917 = 6.9861 < 9.0819] w=0.5090 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)R83.CB) [> 3.5613 = 5.9355 < 7.7161] w=0.5043 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)R19.CB) [> 4.1843 = 6.9739 < 9.0660] w=0.4833 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)V36.CB) [> 3.2928 = 5.4881 < 7.1345] w=0.4815 to align # Constraint # added constraint: constraint((T0377)M38.CB, (T0377)V49.CB) [> 4.3689 = 7.2814 < 9.4658] w=0.4813 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)I32.CB) [> 3.7976 = 6.3293 < 8.2281] w=0.4799 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)S35.CB) [> 4.3378 = 7.2297 < 9.3986] w=0.4790 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)S35.CB) [> 3.5755 = 5.9591 < 7.7469] w=0.4790 to align # Constraint # added constraint: constraint((T0377)I70.CB, (T0377)I84.CB) [> 3.5829 = 5.9715 < 7.7629] w=0.4564 to align # Constraint # added constraint: constraint((T0377)L71.CB, (T0377)I84.CB) [> 3.4414 = 5.7357 < 7.4564] w=0.4564 to align # Constraint # added constraint: constraint((T0377)L53.CB, (T0377)F68.CB) [> 3.8257 = 6.3762 < 8.2891] w=0.4494 to align # Constraint # added constraint: constraint((T0377)A21.CB, (T0377)M38.CB) [> 3.1229 = 5.2048 < 6.7663] w=0.4484 to align # Constraint # added constraint: constraint((T0377)L46.CB, (T0377)I70.CB) [> 3.4492 = 5.7487 < 7.4733] w=0.4473 to align # Constraint # added constraint: constraint((T0377)D10.CB, (T0377)Y88.CB) [> 3.7913 = 6.3188 < 8.2145] w=0.4469 to align # Constraint # added constraint: constraint((T0377)D10.CB, (T0377)G87.CA) [> 4.2991 = 7.1652 < 9.3148] w=0.4469 to align # Constraint # added constraint: constraint((T0377)L41.CB, (T0377)I72.CB) [> 3.8533 = 6.4222 < 8.3489] w=0.4299 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)L24.CB) [> 3.4584 = 5.7640 < 7.4932] w=0.4251 to align # Constraint # added constraint: constraint((T0377)L4.CB, (T0377)M38.CB) [> 4.2272 = 7.0453 < 9.1589] w=0.4187 to align # Constraint # added constraint: constraint((T0377)V20.CB, (T0377)I70.CB) [> 4.4792 = 7.4653 < 9.7049] w=0.4176 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)S35.CB) [> 4.0196 = 6.6994 < 8.7093] w=0.4125 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)G39.CA) [> 3.9984 = 6.6640 < 8.6631] w=0.4093 to align # Constraint # added constraint: constraint((T0377)A21.CB, (T0377)F37.CB) [> 4.3058 = 7.1764 < 9.3293] w=0.4093 to align # Constraint # added constraint: constraint((T0377)V20.CB, (T0377)I32.CB) [> 3.6770 = 6.1284 < 7.9669] w=0.4088 to align # Constraint # added constraint: constraint((T0377)R17.CB, (T0377)V36.CB) [> 4.3497 = 7.2496 < 9.4244] w=0.4065 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)L29.CB) [> 3.6298 = 6.0496 < 7.8645] w=0.4028 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)L71.CB) [> 2.9611 = 4.9352 < 6.4158] w=0.4025 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)V20.CB) [> 3.5900 = 5.9834 < 7.7784] w=0.4012 to align # Constraint # added constraint: constraint((T0377)D10.CB, (T0377)G39.CA) [> 3.7813 = 6.3022 < 8.1928] w=0.4010 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)F37.CB) [> 3.6855 = 6.1426 < 7.9854] w=0.4010 to align # Constraint # added constraint: constraint((T0377)L53.CB, (T0377)I70.CB) [> 3.4993 = 5.8321 < 7.5818] w=0.3909 to align # Constraint # added constraint: constraint((T0377)V49.CB, (T0377)I72.CB) [> 4.5272 = 7.5453 < 9.8088] w=0.3909 to align # Constraint # added constraint: constraint((T0377)I11.CB, (T0377)G87.CA) [> 3.0998 = 5.1664 < 6.7163] w=0.3795 to align # Constraint # added constraint: constraint((T0377)E50.CB, (T0377)I70.CB) [> 3.3614 = 5.6023 < 7.2830] w=0.3783 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)V85.CB) [> 4.1507 = 6.9178 < 8.9931] w=0.3772 to align # Constraint # added constraint: constraint((T0377)L41.CB, (T0377)L71.CB) [> 3.9119 = 6.5199 < 8.4758] w=0.3742 to align # Constraint # added constraint: constraint((T0377)D13.CB, (T0377)D40.CB) [> 3.8703 = 6.4504 < 8.3856] w=0.3615 to align # Constraint # added constraint: constraint((T0377)I11.CB, (T0377)L41.CB) [> 3.8176 = 6.3626 < 8.2714] w=0.3615 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)L41.CB) [> 3.2831 = 5.4718 < 7.1134] w=0.3615 to align # Constraint # added constraint: constraint((T0377)V20.CB, (T0377)V36.CB) [> 3.7520 = 6.2532 < 8.1292] w=0.3370 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)I70.CB) [> 3.8185 = 6.3641 < 8.2734] w=0.3351 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)L71.CB) [> 4.1483 = 6.9138 < 8.9880] w=0.3351 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)V73.CB) [> 3.9534 = 6.5890 < 8.5658] w=0.3351 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)I70.CB) [> 3.3176 = 5.5293 < 7.1881] w=0.3351 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)L71.CB) [> 4.3737 = 7.2895 < 9.4763] w=0.3351 to align # Constraint # added constraint: constraint((T0377)R17.CB, (T0377)D40.CB) [> 4.2007 = 7.0011 < 9.1015] w=0.3337 to align # Constraint # added constraint: constraint((T0377)I70.CB, (T0377)G87.CA) [> 3.9381 = 6.5634 < 8.5325] w=0.3323 to align # Constraint # added constraint: constraint((T0377)V49.CB, (T0377)L71.CB) [> 3.7638 = 6.2729 < 8.1548] w=0.3291 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)I86.CB) [> 3.6380 = 6.0633 < 7.8823] w=0.3250 to align # Constraint # added constraint: constraint((T0377)R17.CB, (T0377)V49.CB) [> 3.3950 = 5.6584 < 7.3559] w=0.3242 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)R83.CB) [> 3.4448 = 5.7414 < 7.4638] w=0.3222 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)I84.CB) [> 4.0684 = 6.7807 < 8.8148] w=0.3222 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)I86.CB) [> 4.2054 = 7.0090 < 9.1117] w=0.3222 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)G87.CA) [> 3.3115 = 5.5192 < 7.1750] w=0.3222 to align # Constraint # added constraint: constraint((T0377)L71.CB, (T0377)I86.CB) [> 4.3342 = 7.2237 < 9.3908] w=0.3189 to align # Constraint # added constraint: constraint((T0377)I70.CB, (T0377)I86.CB) [> 2.6637 = 4.4394 < 5.7712] w=0.3189 to align # Constraint # added constraint: constraint((T0377)F69.CB, (T0377)G87.CA) [> 3.5994 = 5.9990 < 7.7986] w=0.3189 to align # Constraint # added constraint: constraint((T0377)F69.CB, (T0377)I86.CB) [> 3.4813 = 5.8021 < 7.5428] w=0.3189 to align # Constraint # added constraint: constraint((T0377)P74.CB, (T0377)R83.CB) [> 3.8949 = 6.4915 < 8.4389] w=0.3176 to align # Constraint # added constraint: constraint((T0377)V73.CB, (T0377)V85.CB) [> 4.2606 = 7.1010 < 9.2313] w=0.3176 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)I84.CB) [> 2.7498 = 4.5830 < 5.9579] w=0.3168 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)E82.CB) [> 2.8776 = 4.7960 < 6.2348] w=0.3168 to align # Constraint # added constraint: constraint((T0377)V49.CB, (T0377)L62.CB) [> 2.9822 = 4.9703 < 6.4613] w=0.3154 to align # Constraint # added constraint: constraint((T0377)M38.CB, (T0377)L71.CB) [> 3.3841 = 5.6401 < 7.3322] w=0.3153 to align # Constraint # added constraint: constraint((T0377)G57.CA, (T0377)F68.CB) [> 4.3158 = 7.1930 < 9.3509] w=0.3126 to align # Constraint # added constraint: constraint((T0377)K27.CB, (T0377)V49.CB) [> 3.2440 = 5.4066 < 7.0286] w=0.3041 to align # Constraint # added constraint: constraint((T0377)D14.CB, (T0377)D40.CB) [> 2.7273 = 4.5456 < 5.9092] w=0.2952 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)Q33.CB) [> 3.9163 = 6.5272 < 8.4854] w=0.2840 to align # Constraint # added constraint: constraint((T0377)L24.CB, (T0377)V49.CB) [> 4.3474 = 7.2457 < 9.4195] w=0.2833 to align # Constraint # added constraint: constraint((T0377)I11.CB, (T0377)R67.CB) [> 4.6201 = 7.7002 < 10.0102] w=0.2798 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)I72.CB) [> 3.3591 = 5.5985 < 7.2781] w=0.2778 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)I72.CB) [> 4.3811 = 7.3019 < 9.4924] w=0.2778 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)I72.CB) [> 2.8337 = 4.7229 < 6.1398] w=0.2778 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)Q33.CB) [> 2.6036 = 4.3394 < 5.6412] w=0.2769 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)Y34.CB) [> 3.5832 = 5.9720 < 7.7636] w=0.2769 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)Y34.CB) [> 2.6279 = 4.3799 < 5.6939] w=0.2769 to align # Constraint # added constraint: constraint((T0377)D10.CB, (T0377)Q33.CB) [> 3.1285 = 5.2142 < 6.7784] w=0.2769 to align # Constraint # added constraint: constraint((T0377)D10.CB, (T0377)Y34.CB) [> 4.6116 = 7.6860 < 9.9917] w=0.2769 to align # Constraint # added constraint: constraint((T0377)I11.CB, (T0377)I32.CB) [> 3.2698 = 5.4497 < 7.0846] w=0.2769 to align # Constraint # added constraint: constraint((T0377)I11.CB, (T0377)Q33.CB) [> 3.8257 = 6.3761 < 8.2889] w=0.2769 to align # Constraint # added constraint: constraint((T0377)I11.CB, (T0377)Y34.CB) [> 4.6683 = 7.7805 < 10.1146] w=0.2769 to align # Constraint # added constraint: constraint((T0377)R17.CB, (T0377)I32.CB) [> 3.4846 = 5.8076 < 7.5499] w=0.2769 to align # Constraint # added constraint: constraint((T0377)F23.CB, (T0377)V85.CB) [> 4.6172 = 7.6954 < 10.0040] w=0.2769 to align # Constraint # added constraint: constraint((T0377)K27.CB, (T0377)R83.CB) [> 4.3116 = 7.1860 < 9.3418] w=0.2769 to align # Constraint # added constraint: constraint((T0377)L53.CB, (T0377)L71.CB) [> 4.2036 = 7.0060 < 9.1078] w=0.2717 to align # Constraint # added constraint: constraint((T0377)F23.CB, (T0377)L53.CB) [> 4.0102 = 6.6837 < 8.6888] w=0.2708 to align # Constraint # added constraint: constraint((T0377)F23.CB, (T0377)G52.CA) [> 3.8870 = 6.4783 < 8.4218] w=0.2708 to align # Constraint # added constraint: constraint((T0377)E50.CB, (T0377)F68.CB) [> 3.5171 = 5.8619 < 7.6205] w=0.2707 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)I32.CB) [> 4.1430 = 6.9049 < 8.9764] w=0.2695 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)I32.CB) [> 3.9193 = 6.5322 < 8.4919] w=0.2695 to align # Constraint # added constraint: constraint((T0377)L4.CB, (T0377)I32.CB) [> 4.2641 = 7.1068 < 9.2388] w=0.2695 to align # Constraint # added constraint: constraint((T0377)L4.CB, (T0377)L29.CB) [> 3.9117 = 6.5194 < 8.4753] w=0.2695 to align # Constraint # added constraint: constraint((T0377)D30.CB, (T0377)R67.CB) [> 4.6532 = 7.7554 < 10.0820] w=0.2666 to align # Constraint # added constraint: constraint((T0377)L24.CB, (T0377)V36.CB) [> 3.2957 = 5.4928 < 7.1407] w=0.2645 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)R31.CB) [> 4.0637 = 6.7729 < 8.8047] w=0.2614 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)F68.CB) [> 3.8339 = 6.3899 < 8.3069] w=0.2595 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)I70.CB) [> 4.1646 = 6.9410 < 9.0233] w=0.2595 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)G87.CA) [> 3.9704 = 6.6173 < 8.6025] w=0.2548 to align # Constraint # added constraint: constraint((T0377)I11.CB, (T0377)Y88.CB) [> 3.8914 = 6.4858 < 8.4315] w=0.2548 to align # Constraint # added constraint: constraint((T0377)T12.CB, (T0377)S89.CB) [> 3.3471 = 5.5785 < 7.2521] w=0.2548 to align # Constraint # added constraint: constraint((T0377)L29.CB, (T0377)M38.CB) [> 3.6123 = 6.0205 < 7.8267] w=0.2494 to align # Constraint # added constraint: constraint((T0377)L29.CB, (T0377)V73.CB) [> 3.3690 = 5.6150 < 7.2994] w=0.2494 to align # Constraint # added constraint: constraint((T0377)D30.CB, (T0377)P74.CB) [> 4.4599 = 7.4331 < 9.6630] w=0.2494 to align # Constraint # added constraint: constraint((T0377)M38.CB, (T0377)I72.CB) [> 4.5055 = 7.5093 < 9.7620] w=0.2494 to align # Constraint # added constraint: constraint((T0377)I11.CB, (T0377)I86.CB) [> 4.0417 = 6.7361 < 8.7569] w=0.2494 to align # Constraint # added constraint: constraint((T0377)D10.CB, (T0377)I86.CB) [> 4.0881 = 6.8135 < 8.8576] w=0.2494 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)L62.CB) [> 4.6825 = 7.8041 < 10.1453] w=0.2494 to align # Constraint # added constraint: constraint((T0377)Q63.CB, (T0377)I86.CB) [> 4.5996 = 7.6660 < 9.9658] w=0.2494 to align # Constraint # added constraint: constraint((T0377)L62.CB, (T0377)Y88.CB) [> 3.4383 = 5.7305 < 7.4497] w=0.2494 to align # Constraint # added constraint: constraint((T0377)L62.CB, (T0377)G87.CA) [> 3.4253 = 5.7089 < 7.4216] w=0.2494 to align # Constraint # added constraint: constraint((T0377)M38.CB, (T0377)V73.CB) [> 3.2606 = 5.4343 < 7.0646] w=0.2494 to align # Constraint # added constraint: constraint((T0377)G39.CA, (T0377)L71.CB) [> 3.4278 = 5.7129 < 7.4268] w=0.2494 to align # Constraint # added constraint: constraint((T0377)G39.CA, (T0377)I72.CB) [> 3.2277 = 5.3795 < 6.9933] w=0.2494 to align # Constraint # added constraint: constraint((T0377)G39.CA, (T0377)V73.CB) [> 4.2047 = 7.0079 < 9.1102] w=0.2494 to align # Constraint # added constraint: constraint((T0377)F23.CB, (T0377)V49.CB) [> 4.4064 = 7.3440 < 9.5471] w=0.2174 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)P74.CB) [> 3.4405 = 5.7342 < 7.4544] w=0.2104 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)I75.CB) [> 3.8974 = 6.4956 < 8.4443] w=0.2104 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)V73.CB) [> 2.7570 = 4.5951 < 5.9736] w=0.2104 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)I75.CB) [> 3.4025 = 5.6709 < 7.3721] w=0.2104 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)V73.CB) [> 4.4132 = 7.3553 < 9.5619] w=0.2104 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)F68.CB) [> 4.4713 = 7.4522 < 9.6879] w=0.2104 to align # Constraint # added constraint: constraint((T0377)D10.CB, (T0377)S35.CB) [> 3.8989 = 6.4982 < 8.4476] w=0.2104 to align # Constraint # added constraint: constraint((T0377)D10.CB, (T0377)F68.CB) [> 4.2800 = 7.1333 < 9.2733] w=0.2104 to align # Constraint # added constraint: constraint((T0377)D10.CB, (T0377)I70.CB) [> 4.5513 = 7.5855 < 9.8612] w=0.2104 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)V73.CB) [> 3.7727 = 6.2878 < 8.1742] w=0.2104 to align # Constraint # added constraint: constraint((T0377)L4.CB, (T0377)T76.CB) [> 4.7604 = 7.9340 < 10.3143] w=0.2104 to align # Constraint # added constraint: constraint((T0377)L4.CB, (T0377)I75.CB) [> 2.7831 = 4.6385 < 6.0301] w=0.2104 to align # Constraint # added constraint: constraint((T0377)L4.CB, (T0377)P74.CB) [> 4.6855 = 7.8092 < 10.1520] w=0.2104 to align # Constraint # added constraint: constraint((T0377)M3.CB, (T0377)T76.CB) [> 4.5032 = 7.5053 < 9.7569] w=0.2104 to align # Constraint # added constraint: constraint((T0377)M3.CB, (T0377)I75.CB) [> 4.4163 = 7.3605 < 9.5686] w=0.2104 to align # Constraint # added constraint: constraint((T0377)M3.CB, (T0377)P74.CB) [> 3.4935 = 5.8226 < 7.5693] w=0.2104 to align # Constraint # added constraint: constraint((T0377)M3.CB, (T0377)L41.CB) [> 3.7624 = 6.2707 < 8.1519] w=0.2104 to align # Constraint # added constraint: constraint((T0377)M3.CB, (T0377)D40.CB) [> 4.2267 = 7.0445 < 9.1579] w=0.2104 to align # Constraint # added constraint: constraint((T0377)A2.CB, (T0377)N42.CB) [> 2.9915 = 4.9858 < 6.4816] w=0.2104 to align # Constraint # added constraint: constraint((T0377)A2.CB, (T0377)L41.CB) [> 3.8413 = 6.4022 < 8.3229] w=0.2104 to align # Constraint # added constraint: constraint((T0377)A2.CB, (T0377)D40.CB) [> 2.8483 = 4.7471 < 6.1713] w=0.2104 to align # Constraint # added constraint: constraint((T0377)G52.CA, (T0377)L62.CB) [> 3.9622 = 6.6036 < 8.5847] w=0.2104 to align # Constraint # added constraint: constraint((T0377)G28.CA, (T0377)G39.CA) [> 2.5022 = 4.1703 < 5.4214] w=0.2104 to align # Constraint # added constraint: constraint((T0377)R19.CB, (T0377)L62.CB) [> 2.9661 = 4.9436 < 6.4266] w=0.2104 to align # Constraint # added constraint: constraint((T0377)L16.CB, (T0377)E64.CB) [> 3.8730 = 6.4550 < 8.3915] w=0.2104 to align # Constraint # added constraint: constraint((T0377)L16.CB, (T0377)Q63.CB) [> 4.0921 = 6.8201 < 8.8661] w=0.2104 to align # Constraint # added constraint: constraint((T0377)L4.CB, (T0377)F37.CB) [> 4.6139 = 7.6898 < 9.9967] w=0.2082 to align # Constraint # added constraint: constraint((T0377)L71.CB, (T0377)G87.CA) [> 3.5437 = 5.9062 < 7.6781] w=0.2075 to align # Constraint # added constraint: constraint((T0377)L46.CB, (T0377)R67.CB) [> 3.3471 = 5.5785 < 7.2520] w=0.2044 to align # Constraint # added constraint: constraint((T0377)L53.CB, (T0377)V73.CB) [> 3.9515 = 6.5858 < 8.5615] w=0.2044 to align # Constraint # added constraint: constraint((T0377)K60.CB, (T0377)T76.CB) [> 3.3944 = 5.6574 < 7.3546] w=0.2037 to align # Constraint # added constraint: constraint((T0377)Q33.CB, (T0377)F80.CB) [> 4.0203 = 6.7004 < 8.7106] w=0.2036 to align # Constraint # added constraint: constraint((T0377)L4.CB, (T0377)R31.CB) [> 4.4782 = 7.4636 < 9.7027] w=0.2021 to align # Constraint # added constraint: constraint((T0377)F37.CB, (T0377)V49.CB) [> 4.4290 = 7.3818 < 9.5963] w=0.2021 to align # Constraint # added constraint: constraint((T0377)S35.CB, (T0377)G52.CA) [> 4.1265 = 6.8776 < 8.9408] w=0.2021 to align # Constraint # added constraint: constraint((T0377)S35.CB, (T0377)V49.CB) [> 3.4593 = 5.7655 < 7.4952] w=0.2021 to align # Constraint # added constraint: constraint((T0377)D10.CB, (T0377)M38.CB) [> 4.5470 = 7.5783 < 9.8518] w=0.2021 to align # Constraint # added constraint: constraint((T0377)D10.CB, (T0377)F37.CB) [> 2.6301 = 4.3835 < 5.6986] w=0.2021 to align # Constraint # added constraint: constraint((T0377)D10.CB, (T0377)V36.CB) [> 4.0226 = 6.7044 < 8.7157] w=0.2021 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)F37.CB) [> 3.5704 = 5.9507 < 7.7359] w=0.2021 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)G52.CA) [> 4.4111 = 7.3519 < 9.5575] w=0.1989 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)I56.CB) [> 3.6037 = 6.0062 < 7.8080] w=0.1989 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)M38.CB) [> 3.2985 = 5.4975 < 7.1467] w=0.1989 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)M38.CB) [> 4.6147 = 7.6912 < 9.9986] w=0.1989 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)V49.CB) [> 3.2849 = 5.4749 < 7.1174] w=0.1989 to align # Constraint # added constraint: constraint((T0377)F37.CB, (T0377)I56.CB) [> 2.7736 = 4.6227 < 6.0095] w=0.1989 to align # Constraint # added constraint: constraint((T0377)F8.CB, (T0377)I72.CB) [> 4.2293 = 7.0489 < 9.1636] w=0.1921 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)L71.CB) [> 3.4219 = 5.7032 < 7.4142] w=0.1921 to align # Constraint # added constraint: constraint((T0377)R31.CB, (T0377)L62.CB) [> 3.5110 = 5.8516 < 7.6071] w=0.1907 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)Q33.CB) [> 3.8625 = 6.4375 < 8.3687] w=0.1417 to align # Constraint # added constraint: constraint((T0377)I70.CB, (T0377)Y88.CB) [> 3.3321 = 5.5536 < 7.2197] w=0.1381 to align # Constraint # added constraint: constraint((T0377)L71.CB, (T0377)Y88.CB) [> 4.2973 = 7.1622 < 9.3108] w=0.1381 to align # Constraint # added constraint: constraint((T0377)I32.CB, (T0377)F80.CB) [> 3.8669 = 6.4448 < 8.3782] w=0.1363 to align # Constraint # added constraint: constraint((T0377)V36.CB, (T0377)V85.CB) [> 4.4716 = 7.4527 < 9.6884] w=0.1363 to align # Constraint # added constraint: constraint((T0377)I70.CB, (T0377)S97.CB) [> 2.9307 = 4.8845 < 6.3498] w=0.1358 to align # Constraint # added constraint: constraint((T0377)F69.CB, (T0377)S97.CB) [> 3.6834 = 6.1391 < 7.9808] w=0.1358 to align # Constraint # added constraint: constraint((T0377)L62.CB, (T0377)I75.CB) [> 3.4856 = 5.8093 < 7.5521] w=0.1358 to align # Constraint # added constraint: constraint((T0377)L62.CB, (T0377)V73.CB) [> 3.0553 = 5.0922 < 6.6199] w=0.1358 to align # Constraint # added constraint: constraint((T0377)L62.CB, (T0377)I72.CB) [> 3.7845 = 6.3075 < 8.1997] w=0.1358 to align # Constraint # added constraint: constraint((T0377)K60.CB, (T0377)I75.CB) [> 3.5843 = 5.9738 < 7.7659] w=0.1358 to align # Constraint # added constraint: constraint((T0377)V49.CB, (T0377)S97.CB) [> 3.2974 = 5.4957 < 7.1444] w=0.1358 to align # Constraint # added constraint: constraint((T0377)I75.CB, (T0377)S91.CB) [> 3.3847 = 5.6412 < 7.3335] w=0.1358 to align # Constraint # added constraint: constraint((T0377)L4.CB, (T0377)F69.CB) [> 3.2083 = 5.3471 < 6.9513] w=0.1347 to align # Constraint # added constraint: constraint((T0377)L4.CB, (T0377)I70.CB) [> 4.7550 = 7.9249 < 10.3024] w=0.1347 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)I70.CB) [> 2.7991 = 4.6652 < 6.0647] w=0.1347 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)Y34.CB) [> 4.7788 = 7.9646 < 10.3540] w=0.1347 to align # Constraint # added constraint: constraint((T0377)I7.CB, (T0377)Y34.CB) [> 3.2940 = 5.4900 < 7.1371] w=0.1347 to align # Constraint # added constraint: constraint((T0377)F37.CB, (T0377)G57.CA) [> 4.4927 = 7.4879 < 9.7342] w=0.1326 to align # Constraint # added constraint: constraint((T0377)I32.CB, (T0377)V49.CB) [> 4.4541 = 7.4235 < 9.6505] w=0.1319 to align # Constraint # added constraint: constraint((T0377)Y34.CB, (T0377)V49.CB) [> 4.6833 = 7.8055 < 10.1472] w=0.1319 to align # Constraint # added constraint: constraint((T0377)V36.CB, (T0377)F68.CB) [> 3.8436 = 6.4060 < 8.3277] w=0.1319 to align # Constraint # added constraint: constraint((T0377)V36.CB, (T0377)F69.CB) [> 4.3315 = 7.2192 < 9.3849] w=0.1319 to align # Constraint # added constraint: constraint((T0377)F37.CB, (T0377)F69.CB) [> 3.0627 = 5.1045 < 6.6358] w=0.1319 to align # Constraint # added constraint: constraint((T0377)F37.CB, (T0377)I70.CB) [> 4.7285 = 7.8808 < 10.2451] w=0.1319 to align # Constraint # added constraint: constraint((T0377)F37.CB, (T0377)L71.CB) [> 3.1235 = 5.2059 < 6.7676] w=0.1319 to align # Constraint # added constraint: constraint((T0377)L62.CB, (T0377)L71.CB) [> 4.2029 = 7.0048 < 9.1062] w=0.1302 to align # Constraint # added constraint: constraint((T0377)T12.CB, (T0377)P74.CB) [> 4.2375 = 7.0626 < 9.1814] w=0.1247 to align # Constraint # added constraint: constraint((T0377)D10.CB, (T0377)P74.CB) [> 4.4466 = 7.4110 < 9.6343] w=0.1247 to align # Constraint # added constraint: constraint((T0377)D10.CB, (T0377)V73.CB) [> 3.9877 = 6.6462 < 8.6401] w=0.1247 to align # Constraint # added constraint: constraint((T0377)D10.CB, (T0377)I72.CB) [> 4.7603 = 7.9339 < 10.3140] w=0.1247 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)V73.CB) [> 4.4471 = 7.4118 < 9.6353] w=0.1247 to align # Constraint # added constraint: constraint((T0377)Y9.CB, (T0377)I72.CB) [> 2.9863 = 4.9771 < 6.4703] w=0.1247 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)F69.CB) [> 2.5284 = 4.2141 < 5.4783] w=0.1247 to align # Constraint # added constraint: constraint((T0377)V49.CB, (T0377)V73.CB) [> 3.9470 = 6.5784 < 8.5519] w=0.1247 to align # Constraint # added constraint: constraint((T0377)T12.CB, (T0377)K96.CB) [> 3.8446 = 6.4077 < 8.3300] w=0.1230 to align # Constraint # added constraint: constraint((T0377)M3.CB, (T0377)E82.CB) [> 4.2072 = 7.0120 < 9.1156] w=0.0937 to align # Constraint # added constraint: constraint((T0377)L6.CB, (T0377)Q33.CB) [> 3.0266 = 5.0443 < 6.5576] w=0.0744 to align # Constraint # added constraint: constraint((T0377)I32.CB, (T0377)E95.CB) [> 3.3731 = 5.6218 < 7.3084] w=0.0701 to align # Constraint # added constraint: constraint((T0377)I32.CB, (T0377)G90.CA) [> 3.8278 = 6.3797 < 8.2936] w=0.0701 to align # Constraint # added constraint: constraint((T0377)M1.CB, (T0377)N42.CB) [> 3.5032 = 5.8387 < 7.5903] w=0.0701 to align # Constraint # added constraint: constraint((T0377)N78.CB, (T0377)S97.CB) [> 4.2059 = 7.0099 < 9.1129] w=0.0701 to align # Constraint # added constraint: constraint((T0377)E77.CB, (T0377)I86.CB) [> 4.1734 = 6.9556 < 9.0423] w=0.0701 to align # Constraint # added constraint: constraint((T0377)Y34.CB, (T0377)F80.CB) [> 3.1776 = 5.2960 < 6.8848] w=0.0681 to align # Constraint # added constraint: constraint((T0377)Q33.CB, (T0377)E82.CB) [> 2.7228 = 4.5380 < 5.8994] w=0.0681 to align # Constraint # added constraint: constraint((T0377)R31.CB, (T0377)F80.CB) [> 3.5787 = 5.9646 < 7.7539] w=0.0681 to align # Constraint # added constraint: constraint((T0377)I75.CB, (T0377)V85.CB) [> 4.5561 = 7.5935 < 9.8716] w=0.0681 to align # Constraint # added constraint: constraint((T0377)S35.CB, (T0377)E82.CB) [> 2.6679 = 4.4466 < 5.7805] w=0.0681 to align # Constraint # added constraint: constraint((T0377)S35.CB, (T0377)I84.CB) [> 3.9426 = 6.5711 < 8.5424] w=0.0681 to align # Constraint # added constraint: constraint((T0377)S35.CB, (T0377)V85.CB) [> 2.7995 = 4.6658 < 6.0655] w=0.0681 to align # Constraint # added constraint: constraint((T0377)V36.CB, (T0377)E82.CB) [> 4.4800 = 7.4667 < 9.7067] w=0.0681 to align # Constraint # added constraint: constraint((T0377)I56.CB, (T0377)I72.CB) [> 4.5908 = 7.6514 < 9.9468] w=0.0679 to align # Constraint # added constraint: constraint((T0377)R45.CB, (T0377)N98.CB) [> 4.5808 = 7.6347 < 9.9251] w=0.0679 to align # Constraint # added constraint: constraint((T0377)F69.CB, (T0377)N98.CB) [> 3.5679 = 5.9465 < 7.7305] w=0.0679 to align # Constraint # added constraint: constraint((T0377)R67.CB, (T0377)N98.CB) [> 3.8720 = 6.4533 < 8.3893] w=0.0679 to align # Constraint # added constraint: constraint((T0377)L4.CB, (T0377)Q33.CB) [> 4.2335 = 7.0559 < 9.1727] w=0.0674 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)Q33.CB) [> 4.3174 = 7.1957 < 9.3544] w=0.0674 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)L71.CB) [> 4.6747 = 7.7912 < 10.1285] w=0.0674 to align # Constraint # added constraint: constraint((T0377)I56.CB, (T0377)E66.CB) [> 4.7155 = 7.8593 < 10.2170] w=0.0663 to align # Constraint # added constraint: constraint((T0377)Y34.CB, (T0377)V73.CB) [> 3.7077 = 6.1795 < 8.0333] w=0.0660 to align # Constraint # added constraint: constraint((T0377)Y34.CB, (T0377)I72.CB) [> 4.5613 = 7.6021 < 9.8827] w=0.0660 to align # Constraint # added constraint: constraint((T0377)Y34.CB, (T0377)L71.CB) [> 4.4548 = 7.4247 < 9.6521] w=0.0660 to align # Constraint # added constraint: constraint((T0377)Y5.CB, (T0377)L62.CB) [> 3.2919 = 5.4866 < 7.1325] w=0.0659 to align # Constraint # added constraint: constraint((T0377)L4.CB, (T0377)L62.CB) [> 3.9235 = 6.5392 < 8.5009] w=0.0659 to align # Constraint # added constraint: constraint((T0377)M38.CB, (T0377)F69.CB) [> 4.2111 = 7.0185 < 9.1241] w=0.0659 to align # Constraint # added constraint: constraint((T0377)M38.CB, (T0377)I70.CB) [> 3.4247 = 5.7079 < 7.4202] w=0.0659 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0377/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0377/decoys/ # command:Using radius: 8.0000 Using models AND alignments for constraints USE_EVALUE, weight: 0.9605 eval: 2.7242 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9605 eval: 2.7242 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9605 eval: 2.7242 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9395 eval: 4.1709 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9395 eval: 4.1709 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9454 eval: 3.7632 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9454 eval: 3.7632 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9454 eval: 3.7632 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9897 eval: 0.7093 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9897 eval: 0.7093 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9897 eval: 0.7093 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.8903 eval: 7.5558 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.8903 eval: 7.5558 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.8903 eval: 7.5558 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.8879 eval: 7.7211 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.8879 eval: 7.7211 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.8879 eval: 7.7211 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9398 eval: 4.1469 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9398 eval: 4.1469 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9398 eval: 4.1469 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9713 eval: 1.9743 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9713 eval: 1.9743 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9713 eval: 1.9743 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9681 eval: 2.1951 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9681 eval: 2.1951 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9681 eval: 2.1951 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9846 eval: 1.0617 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9846 eval: 1.0617 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9846 eval: 1.0617 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.3961 eval: 41.6000 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.3961 eval: 41.6000 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.3961 eval: 41.6000 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.8575 eval: 9.8134 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.8575 eval: 9.8134 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.8575 eval: 9.8134 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.8611 eval: 9.5658 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.8611 eval: 9.5658 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.8611 eval: 9.5658 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9411 eval: 4.0574 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.9411 eval: 4.0574 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.1000 eval: 62.0000 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.1000 eval: 62.0000 min: 0.0000 max: 62.0000 USE_EVALUE, weight: 0.1000 eval: 62.0000 min: 0.0000 max: 62.0000 Number of contacts in models: 0 Number of contacts in alignments: 46 NUMB_ALIGNS: 46 Adding 805 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -178.7185, CN propb: -178.7185 weights: 0.3019 constraints: 272 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 272 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 272 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 533 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 533 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 805 # command: