# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/
# command:# reading dunbrack-2191.atoms
#
#computed average backbone with maximum peptide_sq_deviance = 0.002
# computed average trans backbone unit from 53157 examples
# computed average trans backbone unit before proline from 2010 examples
# computed average cis backbone unit from 97 examples
# trans (non-proline) backbone unit:
#	  CA= -2.2087 1.0126 -0.0030
#	   O= -0.1499 2.2440 0.0016
#	   C= -0.6889 1.1368 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4581 -0.0000 0.0000
# cis backbone unit:
#	  CA= -0.1436 2.4534 -0.0002
#	   O= -2.0284 0.9742 0.0015
#	   C= -0.8018 1.0771 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4668 0.0000 0.0000
# trans backbone unit before proline:
#	  CA= -2.2100 1.0631 -0.0014
#	   O= -0.1236 2.2458 0.0075
#	   C= -0.6872 1.1517 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4660 0.0000 0.0000


# After reading dunbrack-2191.atoms have 2191 chains in training database
#  Count of chains,residues,atoms: 2191,500310,3902258
#  493341 residues have no bad marker
#  3226 residues lack atoms needed to compute omega
#  1453 residues have cis peptide
#  number of each bad type:
#	NON_STANDARD_RESIDUE	4
#	HAS_OXT	1167
#	TOO_MANY_ATOMS	1
#	TOO_FEW_ATOMS	3052
#	HAS_UNKNOWN_ATOMS	9
#	HAS_DUPLICATE_ATOMS	0
#	CHAIN_BREAK_BEFORE	979
#	NON_PLANAR_PEPTIDE	888
#	BAD_PEPTIDE	2680
#  Note: may sum to more than number of residues, 
#    because one residue may have multiple problems
# command:# Reading rotamer library from dunbrack-2191.rot
# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/
# command:# ReadAtomType exp-pdb.types
Read AtomType exp-pdb with 49 types.
# command:# ReadClashTable exp-pdb-2191-2symm.clash
# Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2
# command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0376/
# command:# Making conformation for sequence T0376 numbered 1 through 321
Created new target T0376 from T0376.a2m
# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0376/
# command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0376//projects/compbio/experiments/protein-predict/casp7/T0376/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0376//projects/compbio/experiments/protein-predict/casp7/T0376/align.constraints_v3.costfcn.gz for input
Trying /projects/compbio/experiments/protein-predict/casp7/T0376/align.constraints_v3.costfcn
# reading script from file /projects/compbio/experiments/protein-predict/casp7/T0376/align.constraints_v3.costfcn
# future Constraint commands -> align
# future HelixConstraint commands -> align
# future StrandConstraint commands -> align
# future SheetConstraint commands -> align
# future Hbond commands -> align
# future SSbond commands -> align
# Constraint # added constraint: constraint((T0376)G77.CA, (T0376)L101.CB) [> 3.8041 = 6.3401 < 8.2422] w=1.0000 to align
# Constraint # added constraint: constraint((T0376)V76.CB, (T0376)L101.CB) [> 3.3570 = 5.5950 < 7.2735] w=1.0000 to align
# Constraint # added constraint: constraint((T0376)V76.CB, (T0376)G100.CA) [> 3.9703 = 6.6172 < 8.6024] w=1.0000 to align
# Constraint # added constraint: constraint((T0376)I75.CB, (T0376)L101.CB) [> 4.1816 = 6.9693 < 9.0601] w=0.9999 to align
# Constraint # added constraint: constraint((T0376)P73.CB, (T0376)K99.CB) [> 2.9829 = 4.9715 < 6.4630] w=0.9846 to align
# Constraint # added constraint: constraint((T0376)I75.CB, (T0376)G100.CA) [> 3.0675 = 5.1126 < 6.6463] w=0.9845 to align
# Constraint # added constraint: constraint((T0376)M102.CB, (T0376)V134.CB) [> 2.7125 = 4.5208 < 5.8771] w=0.9779 to align
# Constraint # added constraint: constraint((T0376)G77.CA, (T0376)M102.CB) [> 2.7042 = 4.5070 < 5.8591] w=0.9769 to align
# Constraint # added constraint: constraint((T0376)L101.CB, (T0376)V134.CB) [> 4.1247 = 6.8745 < 8.9368] w=0.9707 to align
# Constraint # added constraint: constraint((T0376)L101.CB, (T0376)A133.CB) [> 3.2106 = 5.3509 < 6.9562] w=0.9707 to align
# Constraint # added constraint: constraint((T0376)V76.CB, (T0376)A93.CB) [> 2.7552 = 4.5920 < 5.9696] w=0.9693 to align
# Constraint # added constraint: constraint((T0376)V76.CB, (T0376)A98.CB) [> 2.7802 = 4.6336 < 6.0237] w=0.9692 to align
# Constraint # added constraint: constraint((T0376)G100.CA, (T0376)I131.CB) [> 2.9488 = 4.9147 < 6.3891] w=0.9556 to align
# Constraint # added constraint: constraint((T0376)G100.CA, (T0376)A133.CB) [> 4.1457 = 6.9096 < 8.9824] w=0.9553 to align
# Constraint # added constraint: constraint((T0376)T78.CB, (T0376)M102.CB) [> 4.2027 = 7.0046 < 9.1059] w=0.9537 to align
# Constraint # added constraint: constraint((T0376)L101.CB, (T0376)P132.CB) [> 4.3178 = 7.1963 < 9.3552] w=0.9479 to align
# Constraint # added constraint: constraint((T0376)G100.CA, (T0376)P132.CB) [> 2.8115 = 4.6858 < 6.0916] w=0.9479 to align
# Constraint # added constraint: constraint((T0376)V74.CB, (T0376)A98.CB) [> 3.0991 = 5.1651 < 6.7147] w=0.9460 to align
# Constraint # added constraint: constraint((T0376)A42.CB, (T0376)P73.CB) [> 2.5460 = 4.2434 < 5.5164] w=0.9449 to align
# Constraint # added constraint: constraint((T0376)V74.CB, (T0376)K99.CB) [> 3.5397 = 5.8996 < 7.6694] w=0.9383 to align
# Constraint # added constraint: constraint((T0376)I75.CB, (T0376)K99.CB) [> 4.0258 = 6.7096 < 8.7225] w=0.9383 to align
# Constraint # added constraint: constraint((T0376)K99.CB, (T0376)P132.CB) [> 4.1888 = 6.9814 < 9.0758] w=0.9322 to align
# Constraint # added constraint: constraint((T0376)G100.CA, (T0376)V134.CB) [> 4.2154 = 7.0257 < 9.1334] w=0.9322 to align
# Constraint # added constraint: constraint((T0376)Q94.CB, (T0376)I131.CB) [> 3.5650 = 5.9416 < 7.7241] w=0.9322 to align
# Constraint # added constraint: constraint((T0376)T78.CB, (T0376)L101.CB) [> 3.4211 = 5.7019 < 7.4125] w=0.9322 to align
# Constraint # added constraint: constraint((T0376)V134.CB, (T0376)V161.CB) [> 3.7528 = 6.2546 < 8.1310] w=0.9247 to align
# Constraint # added constraint: constraint((T0376)V76.CB, (T0376)M102.CB) [> 4.1762 = 6.9604 < 9.0485] w=0.9232 to align
# Constraint # added constraint: constraint((T0376)I75.CB, (T0376)A98.CB) [> 4.0151 = 6.6918 < 8.6993] w=0.9163 to align
# Constraint # added constraint: constraint((T0376)I75.CB, (T0376)M102.CB) [> 3.2803 = 5.4671 < 7.1072] w=0.9155 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)I75.CB) [> 2.8515 = 4.7525 < 6.1783] w=0.9115 to align
# Constraint # added constraint: constraint((T0376)V43.CB, (T0376)P73.CB) [> 4.3869 = 7.3115 < 9.5050] w=0.9097 to align
# Constraint # added constraint: constraint((T0376)T78.CB, (T0376)A93.CB) [> 3.8825 = 6.4709 < 8.4122] w=0.9093 to align
# Constraint # added constraint: constraint((T0376)I124.CB, (T0376)A133.CB) [> 3.7057 = 6.1762 < 8.0291] w=0.9085 to align
# Constraint # added constraint: constraint((T0376)Y45.CB, (T0376)V76.CB) [> 3.3144 = 5.5240 < 7.1813] w=0.9076 to align
# Constraint # added constraint: constraint((T0376)L101.CB, (T0376)I131.CB) [> 3.3939 = 5.6566 < 7.3536] w=0.9033 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)L160.CB) [> 3.4252 = 5.7086 < 7.4212] w=0.9019 to align
# Constraint # added constraint: constraint((T0376)T78.CB, (T0376)H89.CB) [> 2.8436 = 4.7394 < 6.1612] w=0.9018 to align
# Constraint # added constraint: constraint((T0376)V43.CB, (T0376)V74.CB) [> 3.3487 = 5.5812 < 7.2555] w=0.9018 to align
# Constraint # added constraint: constraint((T0376)G77.CA, (T0376)V103.CB) [> 4.0915 = 6.8192 < 8.8649] w=0.9003 to align
# Constraint # added constraint: constraint((T0376)A42.CB, (T0376)V74.CB) [> 4.1422 = 6.9037 < 8.9748] w=0.8986 to align
# Constraint # added constraint: constraint((T0376)V43.CB, (T0376)I75.CB) [> 4.1544 = 6.9240 < 9.0012] w=0.8941 to align
# Constraint # added constraint: constraint((T0376)A90.CB, (T0376)L101.CB) [> 3.3735 = 5.6225 < 7.3092] w=0.8934 to align
# Constraint # added constraint: constraint((T0376)Y45.CB, (T0376)I75.CB) [> 4.1408 = 6.9014 < 8.9718] w=0.8922 to align
# Constraint # added constraint: constraint((T0376)A42.CB, (T0376)I75.CB) [> 3.6304 = 6.0506 < 7.8658] w=0.8909 to align
# Constraint # added constraint: constraint((T0376)A42.CB, (T0376)I72.CB) [> 3.5679 = 5.9464 < 7.7304] w=0.8908 to align
# Constraint # added constraint: constraint((T0376)M189.CB, (T0376)A205.CB) [> 3.6923 = 6.1539 < 8.0001] w=0.8857 to align
# Constraint # added constraint: constraint((T0376)S41.CB, (T0376)P73.CB) [> 3.9885 = 6.6475 < 8.6418] w=0.8846 to align
# Constraint # added constraint: constraint((T0376)Y45.CB, (T0376)V74.CB) [> 3.8345 = 6.3909 < 8.3082] w=0.8743 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)G162.CA) [> 3.7888 = 6.3146 < 8.2090] w=0.8735 to align
# Constraint # added constraint: constraint((T0376)V103.CB, (T0376)I135.CB) [> 3.6812 = 6.1354 < 7.9760] w=0.8708 to align
# Constraint # added constraint: constraint((T0376)I104.CB, (T0376)Y136.CB) [> 2.9162 = 4.8604 < 6.3185] w=0.8708 to align
# Constraint # added constraint: constraint((T0376)L188.CB, (T0376)T206.CB) [> 3.4923 = 5.8204 < 7.5666] w=0.8703 to align
# Constraint # added constraint: constraint((T0376)V64.CB, (T0376)V96.CB) [> 3.0905 = 5.1507 < 6.6960] w=0.8697 to align
# Constraint # added constraint: constraint((T0376)I36.CB, (T0376)I72.CB) [> 3.2809 = 5.4682 < 7.1087] w=0.8696 to align
# Constraint # added constraint: constraint((T0376)S41.CB, (T0376)I72.CB) [> 4.1085 = 6.8475 < 8.9017] w=0.8690 to align
# Constraint # added constraint: constraint((T0376)V103.CB, (T0376)A133.CB) [> 3.9686 = 6.6144 < 8.5987] w=0.8631 to align
# Constraint # added constraint: constraint((T0376)M189.CB, (T0376)G207.CA) [> 3.3390 = 5.5649 < 7.2344] w=0.8625 to align
# Constraint # added constraint: constraint((T0376)P105.CB, (T0376)Y136.CB) [> 3.8323 = 6.3871 < 8.3032] w=0.8554 to align
# Constraint # added constraint: constraint((T0376)M102.CB, (T0376)Y136.CB) [> 3.5041 = 5.8402 < 7.5922] w=0.8551 to align
# Constraint # added constraint: constraint((T0376)T78.CB, (T0376)V103.CB) [> 3.3920 = 5.6533 < 7.3493] w=0.8550 to align
# Constraint # added constraint: constraint((T0376)V64.CB, (T0376)A93.CB) [> 3.7207 = 6.2012 < 8.0616] w=0.8538 to align
# Constraint # added constraint: constraint((T0376)M40.CB, (T0376)I72.CB) [> 3.9982 = 6.6637 < 8.6628] w=0.8536 to align
# Constraint # added constraint: constraint((T0376)Y45.CB, (T0376)G77.CA) [> 3.8952 = 6.4921 < 8.4397] w=0.8536 to align
# Constraint # added constraint: constraint((T0376)G32.CA, (T0376)V43.CB) [> 3.6943 = 6.1571 < 8.0042] w=0.8531 to align
# Constraint # added constraint: constraint((T0376)A133.CB, (T0376)L160.CB) [> 3.2877 = 5.4795 < 7.1234] w=0.8507 to align
# Constraint # added constraint: constraint((T0376)V134.CB, (T0376)G162.CA) [> 3.1587 = 5.2644 < 6.8438] w=0.8503 to align
# Constraint # added constraint: constraint((T0376)A98.CB, (T0376)I131.CB) [> 4.1356 = 6.8926 < 8.9604] w=0.8488 to align
# Constraint # added constraint: constraint((T0376)A90.CB, (T0376)I124.CB) [> 3.2353 = 5.3922 < 7.0099] w=0.8478 to align
# Constraint # added constraint: constraint((T0376)V103.CB, (T0376)Y136.CB) [> 3.8467 = 6.4111 < 8.3344] w=0.8476 to align
# Constraint # added constraint: constraint((T0376)V103.CB, (T0376)V134.CB) [> 4.2355 = 7.0592 < 9.1769] w=0.8475 to align
# Constraint # added constraint: constraint((T0376)V74.CB, (T0376)G97.CA) [> 4.2489 = 7.0815 < 9.2059] w=0.8474 to align
# Constraint # added constraint: constraint((T0376)G162.CA, (T0376)L188.CB) [> 3.6701 = 6.1169 < 7.9519] w=0.8432 to align
# Constraint # added constraint: constraint((T0376)E65.CB, (T0376)V96.CB) [> 3.3925 = 5.6542 < 7.3505] w=0.8387 to align
# Constraint # added constraint: constraint((T0376)A133.CB, (T0376)V161.CB) [> 3.7278 = 6.2129 < 8.0768] w=0.8351 to align
# Constraint # added constraint: constraint((T0376)T78.CB, (T0376)A90.CB) [> 3.2541 = 5.4236 < 7.0506] w=0.8335 to align
# Constraint # added constraint: constraint((T0376)I190.CB, (T0376)A208.CB) [> 3.2086 = 5.3476 < 6.9519] w=0.8323 to align
# Constraint # added constraint: constraint((T0376)V68.CB, (T0376)G97.CA) [> 3.2252 = 5.3752 < 6.9878] w=0.8313 to align
# Constraint # added constraint: constraint((T0376)V64.CB, (T0376)A98.CB) [> 3.6279 = 6.0465 < 7.8605] w=0.8312 to align
# Constraint # added constraint: constraint((T0376)V64.CB, (T0376)V76.CB) [> 3.4387 = 5.7312 < 7.4505] w=0.8307 to align
# Constraint # added constraint: constraint((T0376)V74.CB, (T0376)G100.CA) [> 4.4401 = 7.4002 < 9.6202] w=0.8306 to align
# Constraint # added constraint: constraint((T0376)G162.CA, (T0376)T187.CB) [> 3.1203 = 5.2005 < 6.7607] w=0.8277 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)G77.CA) [> 3.9401 = 6.5668 < 8.5369] w=0.8273 to align
# Constraint # added constraint: constraint((T0376)V91.CB, (T0376)A127.CB) [> 3.6578 = 6.0963 < 7.9252] w=0.8247 to align
# Constraint # added constraint: constraint((T0376)V68.CB, (T0376)A98.CB) [> 4.1189 = 6.8648 < 8.9243] w=0.8231 to align
# Constraint # added constraint: constraint((T0376)P132.CB, (T0376)V161.CB) [> 2.8566 = 4.7610 < 6.1893] w=0.8120 to align
# Constraint # added constraint: constraint((T0376)G79.CA, (T0376)V103.CB) [> 3.1828 = 5.3047 < 6.8961] w=0.8093 to align
# Constraint # added constraint: constraint((T0376)I75.CB, (T0376)V134.CB) [> 4.1184 = 6.8640 < 8.9232] w=0.8088 to align
# Constraint # added constraint: constraint((T0376)G191.CA, (T0376)A208.CB) [> 3.7743 = 6.2904 < 8.1775] w=0.8085 to align
# Constraint # added constraint: constraint((T0376)F121.CB, (T0376)A133.CB) [> 4.1031 = 6.8385 < 8.8900] w=0.8083 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)K164.CB) [> 3.9153 = 6.5256 < 8.4832] w=0.8043 to align
# Constraint # added constraint: constraint((T0376)G79.CA, (T0376)I104.CB) [> 3.1732 = 5.2886 < 6.8752] w=0.8023 to align
# Constraint # added constraint: constraint((T0376)L188.CB, (T0376)A205.CB) [> 3.0750 = 5.1250 < 6.6625] w=0.8002 to align
# Constraint # added constraint: constraint((T0376)F163.CB, (T0376)L188.CB) [> 3.8066 = 6.3444 < 8.2477] w=0.7969 to align
# Constraint # added constraint: constraint((T0376)G32.CA, (T0376)L67.CB) [> 4.0088 = 6.6813 < 8.6857] w=0.7916 to align
# Constraint # added constraint: constraint((T0376)K99.CB, (T0376)I131.CB) [> 4.0479 = 6.7466 < 8.7706] w=0.7859 to align
# Constraint # added constraint: constraint((T0376)V197.CB, (T0376)A208.CB) [> 3.0173 = 5.0289 < 6.5376] w=0.7848 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)F163.CB) [> 3.7581 = 6.2635 < 8.1425] w=0.7815 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)F163.CB) [> 3.2712 = 5.4521 < 7.0877] w=0.7811 to align
# Constraint # added constraint: constraint((T0376)A133.CB, (T0376)N159.CB) [> 3.7734 = 6.2890 < 8.1757] w=0.7798 to align
# Constraint # added constraint: constraint((T0376)G79.CA, (T0376)H89.CB) [> 4.0978 = 6.8297 < 8.8786] w=0.7796 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)G77.CA) [> 3.2279 = 5.3798 < 6.9938] w=0.7788 to align
# Constraint # added constraint: constraint((T0376)I190.CB, (T0376)G207.CA) [> 3.6998 = 6.1663 < 8.0162] w=0.7783 to align
# Constraint # added constraint: constraint((T0376)I190.CB, (T0376)A205.CB) [> 2.8876 = 4.8127 < 6.2565] w=0.7783 to align
# Constraint # added constraint: constraint((T0376)M189.CB, (T0376)T206.CB) [> 3.9277 = 6.5461 < 8.5099] w=0.7783 to align
# Constraint # added constraint: constraint((T0376)I190.CB, (T0376)I209.CB) [> 3.8951 = 6.4919 < 8.4395] w=0.7775 to align
# Constraint # added constraint: constraint((T0376)V87.CB, (T0376)A123.CB) [> 3.5353 = 5.8921 < 7.6597] w=0.7707 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)M102.CB) [> 3.7876 = 6.3127 < 8.2065] w=0.7674 to align
# Constraint # added constraint: constraint((T0376)F25.CB, (T0376)R66.CB) [> 3.5675 = 5.9459 < 7.7297] w=0.7643 to align
# Constraint # added constraint: constraint((T0376)T187.CB, (T0376)T206.CB) [> 3.0088 = 5.0146 < 6.5190] w=0.7617 to align
# Constraint # added constraint: constraint((T0376)L188.CB, (T0376)G207.CA) [> 4.2791 = 7.1319 < 9.2714] w=0.7610 to align
# Constraint # added constraint: constraint((T0376)V134.CB, (T0376)F163.CB) [> 3.9169 = 6.5283 < 8.4867] w=0.7585 to align
# Constraint # added constraint: constraint((T0376)G191.CA, (T0376)I209.CB) [> 3.0211 = 5.0351 < 6.5457] w=0.7544 to align
# Constraint # added constraint: constraint((T0376)V68.CB, (T0376)V96.CB) [> 3.6193 = 6.0322 < 7.8418] w=0.7539 to align
# Constraint # added constraint: constraint((T0376)M61.CB, (T0376)H92.CB) [> 3.3162 = 5.5271 < 7.1852] w=0.7538 to align
# Constraint # added constraint: constraint((T0376)P105.CB, (T0376)N137.CB) [> 3.6352 = 6.0587 < 7.8763] w=0.7478 to align
# Constraint # added constraint: constraint((T0376)Y45.CB, (T0376)L67.CB) [> 3.4824 = 5.8040 < 7.5452] w=0.7440 to align
# Constraint # added constraint: constraint((T0376)F163.CB, (T0376)M189.CB) [> 3.8068 = 6.3447 < 8.2481] w=0.7434 to align
# Constraint # added constraint: constraint((T0376)G162.CA, (T0376)M189.CB) [> 4.0140 = 6.6900 < 8.6969] w=0.7433 to align
# Constraint # added constraint: constraint((T0376)V161.CB, (T0376)T187.CB) [> 3.6630 = 6.1049 < 7.9364] w=0.7433 to align
# Constraint # added constraint: constraint((T0376)Y45.CB, (T0376)V64.CB) [> 3.5833 = 5.9722 < 7.7639] w=0.7430 to align
# Constraint # added constraint: constraint((T0376)P105.CB, (T0376)Q117.CB) [> 3.5468 = 5.9113 < 7.6847] w=0.7404 to align
# Constraint # added constraint: constraint((T0376)F121.CB, (T0376)I135.CB) [> 3.7666 = 6.2777 < 8.1610] w=0.7400 to align
# Constraint # added constraint: constraint((T0376)M189.CB, (T0376)A208.CB) [> 3.9464 = 6.5773 < 8.5505] w=0.7390 to align
# Constraint # added constraint: constraint((T0376)Y136.CB, (T0376)K164.CB) [> 3.0026 = 5.0043 < 6.5056] w=0.7276 to align
# Constraint # added constraint: constraint((T0376)T83.CB, (T0376)A123.CB) [> 3.2428 = 5.4047 < 7.0262] w=0.7247 to align
# Constraint # added constraint: constraint((T0376)M102.CB, (T0376)I135.CB) [> 4.4279 = 7.3798 < 9.5937] w=0.7154 to align
# Constraint # added constraint: constraint((T0376)V43.CB, (T0376)L67.CB) [> 3.8962 = 6.4937 < 8.4418] w=0.7138 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)V44.CB) [> 3.2614 = 5.4356 < 7.0663] w=0.7135 to align
# Constraint # added constraint: constraint((T0376)V87.CB, (T0376)I124.CB) [> 3.7471 = 6.2452 < 8.1187] w=0.7094 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)A42.CB) [> 3.0153 = 5.0255 < 6.5332] w=0.7060 to align
# Constraint # added constraint: constraint((T0376)V134.CB, (T0376)L160.CB) [> 3.9951 = 6.6585 < 8.6560] w=0.7016 to align
# Constraint # added constraint: constraint((T0376)M189.CB, (T0376)I209.CB) [> 3.5251 = 5.8752 < 7.6378] w=0.6998 to align
# Constraint # added constraint: constraint((T0376)V103.CB, (T0376)I124.CB) [> 3.6683 = 6.1139 < 7.9480] w=0.6940 to align
# Constraint # added constraint: constraint((T0376)A86.CB, (T0376)I124.CB) [> 3.3909 = 5.6514 < 7.3469] w=0.6940 to align
# Constraint # added constraint: constraint((T0376)P105.CB, (T0376)I135.CB) [> 4.0146 = 6.6910 < 8.6983] w=0.6937 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)V44.CB) [> 3.6954 = 6.1590 < 8.0067] w=0.6915 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)V44.CB) [> 3.9811 = 6.6352 < 8.6258] w=0.6904 to align
# Constraint # added constraint: constraint((T0376)K164.CB, (T0376)G191.CA) [> 3.9387 = 6.5645 < 8.5339] w=0.6898 to align
# Constraint # added constraint: constraint((T0376)M102.CB, (T0376)A133.CB) [> 4.3729 = 7.2881 < 9.4746] w=0.6857 to align
# Constraint # added constraint: constraint((T0376)D57.CB, (T0376)H89.CB) [> 3.6213 = 6.0355 < 7.8461] w=0.6854 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)S41.CB) [> 3.3283 = 5.5472 < 7.2114] w=0.6827 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)M40.CB) [> 3.7845 = 6.3075 < 8.1997] w=0.6827 to align
# Constraint # added constraint: constraint((T0376)L125.CB, (T0376)N159.CB) [> 2.6603 = 4.4338 < 5.7640] w=0.6740 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)V76.CB) [> 4.5422 = 7.5703 < 9.8413] w=0.6740 to align
# Constraint # added constraint: constraint((T0376)F163.CB, (T0376)T187.CB) [> 4.2343 = 7.0571 < 9.1743] w=0.6664 to align
# Constraint # added constraint: constraint((T0376)G162.CA, (T0376)V186.CB) [> 3.3565 = 5.5941 < 7.2723] w=0.6659 to align
# Constraint # added constraint: constraint((T0376)F121.CB, (T0376)L160.CB) [> 3.8209 = 6.3682 < 8.2787] w=0.6592 to align
# Constraint # added constraint: constraint((T0376)V103.CB, (T0376)F121.CB) [> 4.0782 = 6.7970 < 8.8360] w=0.6555 to align
# Constraint # added constraint: constraint((T0376)G191.CA, (T0376)T210.CB) [> 4.2027 = 7.0045 < 9.1058] w=0.6553 to align
# Constraint # added constraint: constraint((T0376)L28.CB, (T0376)L67.CB) [> 3.8812 = 6.4687 < 8.4093] w=0.6548 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)M40.CB) [> 3.0636 = 5.1059 < 6.6377] w=0.6529 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)V43.CB) [> 3.4284 = 5.7140 < 7.4283] w=0.6520 to align
# Constraint # added constraint: constraint((T0376)V134.CB, (T0376)M189.CB) [> 3.9318 = 6.5530 < 8.5189] w=0.6473 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)G207.CA) [> 3.9386 = 6.5644 < 8.5337] w=0.6444 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)K164.CB) [> 4.1039 = 6.8398 < 8.8917] w=0.6432 to align
# Constraint # added constraint: constraint((T0376)V134.CB, (T0376)K164.CB) [> 3.3482 = 5.5804 < 7.2545] w=0.6432 to align
# Constraint # added constraint: constraint((T0376)V29.CB, (T0376)R66.CB) [> 3.3566 = 5.5944 < 7.2727] w=0.6424 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)I209.CB) [> 3.6522 = 6.0870 < 7.9131] w=0.6423 to align
# Constraint # added constraint: constraint((T0376)A86.CB, (T0376)H120.CB) [> 4.0204 = 6.7007 < 8.7109] w=0.6403 to align
# Constraint # added constraint: constraint((T0376)I190.CB, (T0376)F200.CB) [> 2.6382 = 4.3971 < 5.7162] w=0.6396 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)A42.CB) [> 4.1843 = 6.9738 < 9.0659] w=0.6377 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)S41.CB) [> 3.5268 = 5.8780 < 7.6415] w=0.6375 to align
# Constraint # added constraint: constraint((T0376)A80.CB, (T0376)H89.CB) [> 3.5294 = 5.8824 < 7.6471] w=0.6349 to align
# Constraint # added constraint: constraint((T0376)L188.CB, (T0376)G204.CA) [> 3.9311 = 6.5518 < 8.5173] w=0.6317 to align
# Constraint # added constraint: constraint((T0376)A86.CB, (T0376)V103.CB) [> 3.9502 = 6.5836 < 8.5587] w=0.6314 to align
# Constraint # added constraint: constraint((T0376)F166.CB, (T0376)G191.CA) [> 3.3153 = 5.5255 < 7.1831] w=0.6306 to align
# Constraint # added constraint: constraint((T0376)Y45.CB, (T0376)G63.CA) [> 4.0488 = 6.7480 < 8.7724] w=0.6296 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)V44.CB) [> 3.4924 = 5.8206 < 7.5668] w=0.6259 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)V43.CB) [> 3.9361 = 6.5601 < 8.5282] w=0.6259 to align
# Constraint # added constraint: constraint((T0376)G47.CA, (T0376)G77.CA) [> 3.5083 = 5.8471 < 7.6013] w=0.6241 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)V43.CB) [> 3.3705 = 5.6174 < 7.3026] w=0.6236 to align
# Constraint # added constraint: constraint((T0376)I36.CB, (T0376)G71.CA) [> 3.9295 = 6.5491 < 8.5138] w=0.6213 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)A208.CB) [> 3.6388 = 6.0647 < 7.8841] w=0.6212 to align
# Constraint # added constraint: constraint((T0376)L28.CB, (T0376)G63.CA) [> 3.8547 = 6.4245 < 8.3519] w=0.6152 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)M40.CB) [> 3.3848 = 5.6413 < 7.3337] w=0.6140 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)V76.CB) [> 3.8998 = 6.4997 < 8.4496] w=0.6105 to align
# Constraint # added constraint: constraint((T0376)I104.CB, (T0376)S138.CB) [> 4.0908 = 6.8180 < 8.8634] w=0.6067 to align
# Constraint # added constraint: constraint((T0376)A90.CB, (T0376)A128.CB) [> 3.1546 = 5.2577 < 6.8350] w=0.6060 to align
# Constraint # added constraint: constraint((T0376)L125.CB, (T0376)L160.CB) [> 4.0679 = 6.7799 < 8.8139] w=0.6053 to align
# Constraint # added constraint: constraint((T0376)T83.CB, (T0376)H120.CB) [> 3.2511 = 5.4184 < 7.0440] w=0.5995 to align
# Constraint # added constraint: constraint((T0376)M102.CB, (T0376)K164.CB) [> 3.8504 = 6.4173 < 8.3425] w=0.5904 to align
# Constraint # added constraint: constraint((T0376)Q94.CB, (T0376)E130.CB) [> 4.0736 = 6.7894 < 8.8262] w=0.5877 to align
# Constraint # added constraint: constraint((T0376)G77.CA, (T0376)A93.CB) [> 4.4336 = 7.3894 < 9.6062] w=0.5860 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)E165.CB) [> 3.2233 = 5.3722 < 6.9839] w=0.5838 to align
# Constraint # added constraint: constraint((T0376)K164.CB, (T0376)M189.CB) [> 3.0512 = 5.0854 < 6.6110] w=0.5818 to align
# Constraint # added constraint: constraint((T0376)A176.CB, (T0376)C203.CB) [> 3.2234 = 5.3722 < 6.9839] w=0.5787 to align
# Constraint # added constraint: constraint((T0376)Y136.CB, (T0376)F163.CB) [> 3.9558 = 6.5930 < 8.5709] w=0.5736 to align
# Constraint # added constraint: constraint((T0376)V76.CB, (T0376)V96.CB) [> 4.2720 = 7.1199 < 9.2559] w=0.5721 to align
# Constraint # added constraint: constraint((T0376)K164.CB, (T0376)I190.CB) [> 3.8990 = 6.4983 < 8.4477] w=0.5703 to align
# Constraint # added constraint: constraint((T0376)K118.CB, (T0376)L153.CB) [> 3.8195 = 6.3658 < 8.2756] w=0.5605 to align
# Constraint # added constraint: constraint((T0376)P105.CB, (T0376)S138.CB) [> 3.9436 = 6.5727 < 8.5445] w=0.5543 to align
# Constraint # added constraint: constraint((T0376)V161.CB, (T0376)V186.CB) [> 3.9852 = 6.6419 < 8.6345] w=0.5539 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)Y45.CB) [> 3.3742 = 5.6237 < 7.3108] w=0.5498 to align
# Constraint # added constraint: constraint((T0376)G77.CA, (T0376)I104.CB) [> 4.1676 = 6.9459 < 9.0297] w=0.5491 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)A208.CB) [> 4.0731 = 6.7885 < 8.8250] w=0.5452 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)G207.CA) [> 4.2382 = 7.0637 < 9.1828] w=0.5452 to align
# Constraint # added constraint: constraint((T0376)A90.CB, (T0376)V103.CB) [> 4.4199 = 7.3665 < 9.5764] w=0.5384 to align
# Constraint # added constraint: constraint((T0376)S138.CB, (T0376)G167.CA) [> 3.6997 = 6.1662 < 8.0160] w=0.5372 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)L35.CB) [> 3.0375 = 5.0624 < 6.5812] w=0.5345 to align
# Constraint # added constraint: constraint((T0376)A42.CB, (T0376)K99.CB) [> 4.5570 = 7.5951 < 9.8736] w=0.5326 to align
# Constraint # added constraint: constraint((T0376)E165.CB, (T0376)I190.CB) [> 3.8535 = 6.4225 < 8.3492] w=0.5306 to align
# Constraint # added constraint: constraint((T0376)P73.CB, (T0376)G100.CA) [> 4.2958 = 7.1596 < 9.3075] w=0.5258 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)G211.CA) [> 2.8479 = 4.7465 < 6.1705] w=0.5247 to align
# Constraint # added constraint: constraint((T0376)L101.CB, (T0376)A128.CB) [> 3.6618 = 6.1030 < 7.9339] w=0.5227 to align
# Constraint # added constraint: constraint((T0376)T187.CB, (T0376)G207.CA) [> 4.4254 = 7.3758 < 9.5885] w=0.5211 to align
# Constraint # added constraint: constraint((T0376)K164.CB, (T0376)I209.CB) [> 3.8189 = 6.3649 < 8.2743] w=0.5197 to align
# Constraint # added constraint: constraint((T0376)F150.CB, (T0376)N178.CB) [> 3.4767 = 5.7945 < 7.5328] w=0.5140 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)T210.CB) [> 4.0669 = 6.7781 < 8.8116] w=0.5131 to align
# Constraint # added constraint: constraint((T0376)V64.CB, (T0376)G97.CA) [> 3.7151 = 6.1919 < 8.0494] w=0.5084 to align
# Constraint # added constraint: constraint((T0376)T83.CB, (T0376)A119.CB) [> 4.2839 = 7.1399 < 9.2818] w=0.5014 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)K31.CB) [> 3.7494 = 6.2490 < 8.1236] w=0.5000 to align
# Constraint # added constraint: constraint((T0376)G167.CA, (T0376)G191.CA) [> 4.3132 = 7.1886 < 9.3452] w=0.4975 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)I75.CB) [> 4.1733 = 6.9555 < 9.0422] w=0.4972 to align
# Constraint # added constraint: constraint((T0376)F163.CB, (T0376)V186.CB) [> 3.9988 = 6.6647 < 8.6641] w=0.4971 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)G211.CA) [> 3.8582 = 6.4303 < 8.3594] w=0.4954 to align
# Constraint # added constraint: constraint((T0376)G8.CA, (T0376)S41.CB) [> 2.7615 = 4.6025 < 5.9833] w=0.4939 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)G32.CA) [> 4.1050 = 6.8417 < 8.8941] w=0.4927 to align
# Constraint # added constraint: constraint((T0376)D57.CB, (T0376)A88.CB) [> 3.9242 = 6.5403 < 8.5024] w=0.4927 to align
# Constraint # added constraint: constraint((T0376)F121.CB, (T0376)H157.CB) [> 3.7878 = 6.3130 < 8.2069] w=0.4920 to align
# Constraint # added constraint: constraint((T0376)T83.CB, (T0376)I124.CB) [> 4.2394 = 7.0656 < 9.1853] w=0.4920 to align
# Constraint # added constraint: constraint((T0376)A147.CB, (T0376)E177.CB) [> 3.2057 = 5.3428 < 6.9456] w=0.4917 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)T210.CB) [> 3.8103 = 6.3505 < 8.2557] w=0.4911 to align
# Constraint # added constraint: constraint((T0376)I179.CB, (T0376)G204.CA) [> 3.1119 = 5.1865 < 6.7425] w=0.4909 to align
# Constraint # added constraint: constraint((T0376)I179.CB, (T0376)L188.CB) [> 3.5438 = 5.9064 < 7.6783] w=0.4867 to align
# Constraint # added constraint: constraint((T0376)M172.CB, (T0376)F200.CB) [> 4.0268 = 6.7113 < 8.7247] w=0.4863 to align
# Constraint # added constraint: constraint((T0376)E165.CB, (T0376)G191.CA) [> 3.6414 = 6.0689 < 7.8896] w=0.4856 to align
# Constraint # added constraint: constraint((T0376)L35.CB, (T0376)I72.CB) [> 4.0518 = 6.7531 < 8.7790] w=0.4841 to align
# Constraint # added constraint: constraint((T0376)M61.CB, (T0376)A93.CB) [> 4.1389 = 6.8981 < 8.9676] w=0.4840 to align
# Constraint # added constraint: constraint((T0376)A147.CB, (T0376)N178.CB) [> 3.6027 = 6.0045 < 7.8059] w=0.4833 to align
# Constraint # added constraint: constraint((T0376)S7.CB, (T0376)S41.CB) [> 3.4215 = 5.7025 < 7.4133] w=0.4827 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)A27.CB) [> 2.7846 = 4.6410 < 6.0332] w=0.4819 to align
# Constraint # added constraint: constraint((T0376)R60.CB, (T0376)H89.CB) [> 3.7599 = 6.2664 < 8.1464] w=0.4778 to align
# Constraint # added constraint: constraint((T0376)A133.CB, (T0376)G162.CA) [> 4.4255 = 7.3758 < 9.5886] w=0.4775 to align
# Constraint # added constraint: constraint((T0376)E165.CB, (T0376)M189.CB) [> 4.0170 = 6.6950 < 8.7035] w=0.4769 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)L153.CB) [> 3.2808 = 5.4680 < 7.1084] w=0.4753 to align
# Constraint # added constraint: constraint((T0376)R106.CB, (T0376)Q117.CB) [> 4.2569 = 7.0949 < 9.2234] w=0.4704 to align
# Constraint # added constraint: constraint((T0376)A90.CB, (T0376)I131.CB) [> 4.1775 = 6.9626 < 9.0514] w=0.4691 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)G167.CA) [> 3.9922 = 6.6537 < 8.6498] w=0.4678 to align
# Constraint # added constraint: constraint((T0376)A176.CB, (T0376)G204.CA) [> 3.9875 = 6.6458 < 8.6395] w=0.4639 to align
# Constraint # added constraint: constraint((T0376)V91.CB, (T0376)A128.CB) [> 4.0142 = 6.6903 < 8.6974] w=0.4612 to align
# Constraint # added constraint: constraint((T0376)A175.CB, (T0376)A205.CB) [> 3.5969 = 5.9948 < 7.7932] w=0.4601 to align
# Constraint # added constraint: constraint((T0376)A175.CB, (T0376)C203.CB) [> 2.8062 = 4.6771 < 6.0802] w=0.4600 to align
# Constraint # added constraint: constraint((T0376)F121.CB, (T0376)L153.CB) [> 3.4558 = 5.7597 < 7.4876] w=0.4594 to align
# Constraint # added constraint: constraint((T0376)L160.CB, (T0376)V186.CB) [> 3.8923 = 6.4872 < 8.4334] w=0.4571 to align
# Constraint # added constraint: constraint((T0376)G191.CA, (T0376)F200.CB) [> 4.1006 = 6.8343 < 8.8846] w=0.4568 to align
# Constraint # added constraint: constraint((T0376)L125.CB, (T0376)H157.CB) [> 3.5649 = 5.9415 < 7.7239] w=0.4507 to align
# Constraint # added constraint: constraint((T0376)F25.CB, (T0376)G63.CA) [> 3.6062 = 6.0103 < 7.8134] w=0.4484 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)L35.CB) [> 4.2161 = 7.0269 < 9.1350] w=0.4475 to align
# Constraint # added constraint: constraint((T0376)M172.CB, (T0376)C203.CB) [> 3.1585 = 5.2642 < 6.8434] w=0.4454 to align
# Constraint # added constraint: constraint((T0376)M61.CB, (T0376)V96.CB) [> 3.1725 = 5.2874 < 6.8737] w=0.4453 to align
# Constraint # added constraint: constraint((T0376)Q117.CB, (T0376)L153.CB) [> 4.0463 = 6.7438 < 8.7670] w=0.4436 to align
# Constraint # added constraint: constraint((T0376)K164.CB, (T0376)L188.CB) [> 4.3444 = 7.2407 < 9.4129] w=0.4422 to align
# Constraint # added constraint: constraint((T0376)A93.CB, (T0376)I131.CB) [> 4.0990 = 6.8317 < 8.8812] w=0.4385 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)T78.CB) [> 4.0656 = 6.7760 < 8.8088] w=0.4380 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)I209.CB) [> 3.3763 = 5.6272 < 7.3153] w=0.4371 to align
# Constraint # added constraint: constraint((T0376)G167.CA, (T0376)V192.CB) [> 3.7908 = 6.3180 < 8.2134] w=0.4369 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)K31.CB) [> 3.5069 = 5.8448 < 7.5983] w=0.4349 to align
# Constraint # added constraint: constraint((T0376)R173.CB, (T0376)C203.CB) [> 3.5420 = 5.9034 < 7.6744] w=0.4337 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)L28.CB) [> 3.3563 = 5.5939 < 7.2721] w=0.4320 to align
# Constraint # added constraint: constraint((T0376)F166.CB, (T0376)V192.CB) [> 2.9538 = 4.9230 < 6.4000] w=0.4315 to align
# Constraint # added constraint: constraint((T0376)V81.CB, (T0376)S109.CB) [> 3.6971 = 6.1619 < 8.0105] w=0.4308 to align
# Constraint # added constraint: constraint((T0376)Y45.CB, (T0376)A98.CB) [> 4.5413 = 7.5688 < 9.8394] w=0.4307 to align
# Constraint # added constraint: constraint((T0376)G32.CA, (T0376)I72.CB) [> 4.1856 = 6.9761 < 9.0689] w=0.4302 to align
# Constraint # added constraint: constraint((T0376)A175.CB, (T0376)F200.CB) [> 3.6215 = 6.0358 < 7.8465] w=0.4294 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)V74.CB) [> 4.5227 = 7.5378 < 9.7992] w=0.4273 to align
# Constraint # added constraint: constraint((T0376)Y136.CB, (T0376)F166.CB) [> 4.2120 = 7.0200 < 9.1260] w=0.4235 to align
# Constraint # added constraint: constraint((T0376)A175.CB, (T0376)L188.CB) [> 3.7907 = 6.3178 < 8.2131] w=0.4225 to align
# Constraint # added constraint: constraint((T0376)A80.CB, (T0376)V103.CB) [> 4.0436 = 6.7393 < 8.7611] w=0.4218 to align
# Constraint # added constraint: constraint((T0376)P139.CB, (T0376)G167.CA) [> 3.7031 = 6.1718 < 8.0233] w=0.4215 to align
# Constraint # added constraint: constraint((T0376)V29.CB, (T0376)L67.CB) [> 3.7494 = 6.2490 < 8.1237] w=0.4214 to align
# Constraint # added constraint: constraint((T0376)I179.CB, (T0376)C203.CB) [> 3.8673 = 6.4454 < 8.3791] w=0.4214 to align
# Constraint # added constraint: constraint((T0376)V81.CB, (T0376)V107.CB) [> 3.3218 = 5.5363 < 7.1971] w=0.4175 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)I209.CB) [> 4.0890 = 6.8150 < 8.8595] w=0.4160 to align
# Constraint # added constraint: constraint((T0376)V197.CB, (T0376)L223.CB) [> 3.5098 = 5.8497 < 7.6046] w=0.4152 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)F150.CB) [> 3.8965 = 6.4942 < 8.4424] w=0.4142 to align
# Constraint # added constraint: constraint((T0376)G8.CA, (T0376)G207.CA) [> 2.7712 = 4.6187 < 6.0043] w=0.4107 to align
# Constraint # added constraint: constraint((T0376)S138.CB, (T0376)F166.CB) [> 2.4082 = 4.0136 < 5.2177] w=0.4080 to align
# Constraint # added constraint: constraint((T0376)S7.CB, (T0376)T206.CB) [> 3.3295 = 5.5492 < 7.2139] w=0.4075 to align
# Constraint # added constraint: constraint((T0376)R60.CB, (T0376)V76.CB) [> 4.0532 = 6.7554 < 8.7821] w=0.4071 to align
# Constraint # added constraint: constraint((T0376)A80.CB, (T0376)R106.CB) [> 4.1349 = 6.8915 < 8.9589] w=0.4070 to align
# Constraint # added constraint: constraint((T0376)A147.CB, (T0376)S181.CB) [> 3.4285 = 5.7141 < 7.4284] w=0.4064 to align
# Constraint # added constraint: constraint((T0376)R106.CB, (T0376)H120.CB) [> 3.5819 = 5.9699 < 7.7608] w=0.4014 to align
# Constraint # added constraint: constraint((T0376)G39.CA, (T0376)I221.CB) [> 3.5071 = 5.8451 < 7.5987] w=0.4005 to align
# Constraint # added constraint: constraint((T0376)D193.CB, (T0376)I212.CB) [> 3.8816 = 6.4693 < 8.4101] w=0.4003 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)F166.CB) [> 3.6294 = 6.0489 < 7.8636] w=0.3998 to align
# Constraint # added constraint: constraint((T0376)F151.CB, (T0376)R182.CB) [> 3.8384 = 6.3973 < 8.3165] w=0.3996 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)K31.CB) [> 3.8563 = 6.4271 < 8.3553] w=0.3969 to align
# Constraint # added constraint: constraint((T0376)P132.CB, (T0376)G162.CA) [> 4.4597 = 7.4328 < 9.6627] w=0.3966 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)T210.CB) [> 4.2583 = 7.0972 < 9.2264] w=0.3928 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)C46.CB) [> 4.2451 = 7.0752 < 9.1977] w=0.3924 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)R60.CB) [> 3.5349 = 5.8915 < 7.6590] w=0.3897 to align
# Constraint # added constraint: constraint((T0376)G8.CA, (T0376)A208.CB) [> 3.9434 = 6.5724 < 8.5441] w=0.3875 to align
# Constraint # added constraint: constraint((T0376)P105.CB, (T0376)H120.CB) [> 4.3805 = 7.3008 < 9.4911] w=0.3871 to align
# Constraint # added constraint: constraint((T0376)V134.CB, (T0376)T187.CB) [> 4.3754 = 7.2923 < 9.4800] w=0.3865 to align
# Constraint # added constraint: constraint((T0376)G79.CA, (T0376)M102.CB) [> 4.4136 = 7.3560 < 9.5627] w=0.3841 to align
# Constraint # added constraint: constraint((T0376)G79.CA, (T0376)R106.CB) [> 4.4776 = 7.4627 < 9.7016] w=0.3838 to align
# Constraint # added constraint: constraint((T0376)K118.CB, (T0376)A152.CB) [> 3.4733 = 5.7889 < 7.5255] w=0.3824 to align
# Constraint # added constraint: constraint((T0376)F163.CB, (T0376)N178.CB) [> 3.9611 = 6.6019 < 8.5825] w=0.3796 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)C224.CB) [> 3.5715 = 5.9525 < 7.7383] w=0.3783 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)L28.CB) [> 3.9806 = 6.6344 < 8.6247] w=0.3783 to align
# Constraint # added constraint: constraint((T0376)A86.CB, (T0376)A123.CB) [> 3.7986 = 6.3310 < 8.2303] w=0.3779 to align
# Constraint # added constraint: constraint((T0376)T210.CB, (T0376)V220.CB) [> 3.5878 = 5.9797 < 7.7736] w=0.3775 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)G39.CA) [> 4.2122 = 7.0204 < 9.1265] w=0.3767 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)A42.CB) [> 4.0649 = 6.7749 < 8.8073] w=0.3758 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)I209.CB) [> 3.0031 = 5.0053 < 6.5068] w=0.3754 to align
# Constraint # added constraint: constraint((T0376)L125.CB, (T0376)K158.CB) [> 4.0656 = 6.7760 < 8.8088] w=0.3722 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)V220.CB) [> 3.0569 = 5.0948 < 6.6232] w=0.3706 to align
# Constraint # added constraint: constraint((T0376)H198.CB, (T0376)S227.CB) [> 3.8405 = 6.4008 < 8.3211] w=0.3698 to align
# Constraint # added constraint: constraint((T0376)K31.CB, (T0376)N214.CB) [> 4.3758 = 7.2930 < 9.4809] w=0.3696 to align
# Constraint # added constraint: constraint((T0376)V81.CB, (T0376)R106.CB) [> 2.9025 = 4.8375 < 6.2887] w=0.3695 to align
# Constraint # added constraint: constraint((T0376)V201.CB, (T0376)S227.CB) [> 3.1454 = 5.2424 < 6.8151] w=0.3694 to align
# Constraint # added constraint: constraint((T0376)I131.CB, (T0376)N159.CB) [> 4.2028 = 7.0046 < 9.1060] w=0.3692 to align
# Constraint # added constraint: constraint((T0376)V161.CB, (T0376)L188.CB) [> 3.9886 = 6.6476 < 8.6419] w=0.3659 to align
# Constraint # added constraint: constraint((T0376)T78.CB, (T0376)I104.CB) [> 4.1269 = 6.8782 < 8.9416] w=0.3642 to align
# Constraint # added constraint: constraint((T0376)I190.CB, (T0376)V201.CB) [> 4.4148 = 7.3581 < 9.5655] w=0.3641 to align
# Constraint # added constraint: constraint((T0376)K122.CB, (T0376)H157.CB) [> 3.7538 = 6.2563 < 8.1332] w=0.3620 to align
# Constraint # added constraint: constraint((T0376)R106.CB, (T0376)S138.CB) [> 3.4883 = 5.8138 < 7.5580] w=0.3617 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)A42.CB) [> 3.9777 = 6.6296 < 8.6184] w=0.3610 to align
# Constraint # added constraint: constraint((T0376)S138.CB, (T0376)E165.CB) [> 3.8707 = 6.4512 < 8.3865] w=0.3608 to align
# Constraint # added constraint: constraint((T0376)A175.CB, (T0376)I190.CB) [> 3.7311 = 6.2185 < 8.0840] w=0.3600 to align
# Constraint # added constraint: constraint((T0376)F150.CB, (T0376)F163.CB) [> 3.6782 = 6.1304 < 7.9695] w=0.3552 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)V43.CB) [> 3.9207 = 6.5346 < 8.4949] w=0.3550 to align
# Constraint # added constraint: constraint((T0376)Y140.CB, (T0376)F166.CB) [> 4.1110 = 6.8516 < 8.9071] w=0.3531 to align
# Constraint # added constraint: constraint((T0376)I179.CB, (T0376)A205.CB) [> 4.2478 = 7.0797 < 9.2036] w=0.3520 to align
# Constraint # added constraint: constraint((T0376)P23.CB, (T0376)Q59.CB) [> 3.8493 = 6.4154 < 8.3400] w=0.3474 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)G213.CA) [> 3.0669 = 5.1115 < 6.6450] w=0.3474 to align
# Constraint # added constraint: constraint((T0376)M40.CB, (T0376)G213.CA) [> 4.1894 = 6.9823 < 9.0770] w=0.3473 to align
# Constraint # added constraint: constraint((T0376)D38.CB, (T0376)P217.CB) [> 2.8219 = 4.7032 < 6.1142] w=0.3471 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)M49.CB) [> 3.6590 = 6.0984 < 7.9279] w=0.3468 to align
# Constraint # added constraint: constraint((T0376)F25.CB, (T0376)E62.CB) [> 3.8119 = 6.3532 < 8.2591] w=0.3465 to align
# Constraint # added constraint: constraint((T0376)A133.CB, (T0376)H157.CB) [> 4.3470 = 7.2449 < 9.4184] w=0.3432 to align
# Constraint # added constraint: constraint((T0376)I114.CB, (T0376)L153.CB) [> 3.9275 = 6.5459 < 8.5097] w=0.3413 to align
# Constraint # added constraint: constraint((T0376)V76.CB, (T0376)A90.CB) [> 4.3723 = 7.2872 < 9.4733] w=0.3388 to align
# Constraint # added constraint: constraint((T0376)V81.CB, (T0376)L108.CB) [> 3.5536 = 5.9227 < 7.6995] w=0.3386 to align
# Constraint # added constraint: constraint((T0376)E165.CB, (T0376)L188.CB) [> 3.9817 = 6.6362 < 8.6271] w=0.3383 to align
# Constraint # added constraint: constraint((T0376)D38.CB, (T0376)I221.CB) [> 3.5119 = 5.8532 < 7.6092] w=0.3383 to align
# Constraint # added constraint: constraint((T0376)Y140.CB, (T0376)G167.CA) [> 4.1776 = 6.9627 < 9.0515] w=0.3378 to align
# Constraint # added constraint: constraint((T0376)A175.CB, (T0376)G204.CA) [> 3.5463 = 5.9106 < 7.6837] w=0.3377 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)G63.CA) [> 4.2411 = 7.0685 < 9.1890] w=0.3320 to align
# Constraint # added constraint: constraint((T0376)L35.CB, (T0376)P217.CB) [> 3.6638 = 6.1063 < 7.9382] w=0.3318 to align
# Constraint # added constraint: constraint((T0376)G8.CA, (T0376)T206.CB) [> 4.1632 = 6.9387 < 9.0203] w=0.3315 to align
# Constraint # added constraint: constraint((T0376)P132.CB, (T0376)L160.CB) [> 4.3610 = 7.2683 < 9.4488] w=0.3308 to align
# Constraint # added constraint: constraint((T0376)V192.CB, (T0376)I209.CB) [> 4.0568 = 6.7613 < 8.7896] w=0.3294 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)N214.CB) [> 4.4528 = 7.4214 < 9.6478] w=0.3289 to align
# Constraint # added constraint: constraint((T0376)S126.CB, (T0376)N159.CB) [> 4.6024 = 7.6706 < 9.9718] w=0.3281 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)N214.CB) [> 3.4438 = 5.7397 < 7.4616] w=0.3251 to align
# Constraint # added constraint: constraint((T0376)W52.CB, (T0376)G79.CA) [> 4.4216 = 7.3693 < 9.5801] w=0.3246 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)G213.CA) [> 4.1754 = 6.9589 < 9.0466] w=0.3243 to align
# Constraint # added constraint: constraint((T0376)T83.CB, (T0376)R106.CB) [> 4.5063 = 7.5105 < 9.7636] w=0.3243 to align
# Constraint # added constraint: constraint((T0376)A208.CB, (T0376)V220.CB) [> 3.9640 = 6.6067 < 8.5887] w=0.3241 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)G50.CA) [> 2.7883 = 4.6471 < 6.0413] w=0.3240 to align
# Constraint # added constraint: constraint((T0376)A147.CB, (T0376)Y174.CB) [> 3.6957 = 6.1595 < 8.0073] w=0.3234 to align
# Constraint # added constraint: constraint((T0376)F166.CB, (T0376)I190.CB) [> 3.9589 = 6.5982 < 8.5776] w=0.3230 to align
# Constraint # added constraint: constraint((T0376)R154.CB, (T0376)R182.CB) [> 3.5686 = 5.9476 < 7.7319] w=0.3217 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)M189.CB) [> 4.2193 = 7.0321 < 9.1418] w=0.3202 to align
# Constraint # added constraint: constraint((T0376)M40.CB, (T0376)P217.CB) [> 3.0772 = 5.1287 < 6.6673] w=0.3166 to align
# Constraint # added constraint: constraint((T0376)G39.CA, (T0376)P217.CB) [> 3.8335 = 6.3892 < 8.3060] w=0.3166 to align
# Constraint # added constraint: constraint((T0376)N202.CB, (T0376)S227.CB) [> 4.0369 = 6.7281 < 8.7465] w=0.3166 to align
# Constraint # added constraint: constraint((T0376)V107.CB, (T0376)Y141.CB) [> 4.2863 = 7.1439 < 9.2871] w=0.3163 to align
# Constraint # added constraint: constraint((T0376)V197.CB, (T0376)T210.CB) [> 4.3179 = 7.1966 < 9.3555] w=0.3161 to align
# Constraint # added constraint: constraint((T0376)A80.CB, (T0376)I104.CB) [> 4.0851 = 6.8086 < 8.8511] w=0.3153 to align
# Constraint # added constraint: constraint((T0376)V192.CB, (T0376)A208.CB) [> 4.3031 = 7.1718 < 9.3233] w=0.3138 to align
# Constraint # added constraint: constraint((T0376)W52.CB, (T0376)G77.CA) [> 4.0311 = 6.7184 < 8.7340] w=0.3089 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)P217.CB) [> 3.7707 = 6.2844 < 8.1698] w=0.3089 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)D51.CB) [> 3.3568 = 5.5946 < 7.2730] w=0.3088 to align
# Constraint # added constraint: constraint((T0376)G39.CA, (T0376)K218.CB) [> 4.2595 = 7.0992 < 9.2289] w=0.3087 to align
# Constraint # added constraint: constraint((T0376)A90.CB, (T0376)A133.CB) [> 4.5090 = 7.5151 < 9.7696] w=0.3083 to align
# Constraint # added constraint: constraint((T0376)V76.CB, (T0376)H89.CB) [> 4.3053 = 7.1755 < 9.3282] w=0.3083 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)N214.CB) [> 3.3864 = 5.6439 < 7.3371] w=0.3043 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)S48.CB) [> 4.2876 = 7.1461 < 9.2899] w=0.3011 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)M49.CB) [> 2.3265 = 3.8775 < 5.0407] w=0.3011 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)G50.CA) [> 4.1698 = 6.9496 < 9.0345] w=0.3011 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)M49.CB) [> 4.1318 = 6.8863 < 8.9521] w=0.3011 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)G50.CA) [> 3.7242 = 6.2070 < 8.0690] w=0.3011 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)G50.CA) [> 3.4026 = 5.6710 < 7.3723] w=0.3011 to align
# Constraint # added constraint: constraint((T0376)P23.CB, (T0376)G63.CA) [> 3.8656 = 6.4427 < 8.3756] w=0.3011 to align
# Constraint # added constraint: constraint((T0376)M49.CB, (T0376)G211.CA) [> 3.0960 = 5.1600 < 6.7080] w=0.3011 to align
# Constraint # added constraint: constraint((T0376)G207.CA, (T0376)C224.CB) [> 3.8552 = 6.4253 < 8.3529] w=0.3011 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)N214.CB) [> 4.0844 = 6.8073 < 8.8494] w=0.3011 to align
# Constraint # added constraint: constraint((T0376)M40.CB, (T0376)I221.CB) [> 4.1031 = 6.8386 < 8.8901] w=0.3010 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)T206.CB) [> 4.3110 = 7.1851 < 9.3406] w=0.3002 to align
# Constraint # added constraint: constraint((T0376)S48.CB, (T0376)I104.CB) [> 4.2636 = 7.1060 < 9.2378] w=0.2990 to align
# Constraint # added constraint: constraint((T0376)D148.CB, (T0376)A175.CB) [> 3.2584 = 5.4307 < 7.0599] w=0.2950 to align
# Constraint # added constraint: constraint((T0376)G8.CA, (T0376)A42.CB) [> 4.1744 = 6.9573 < 9.0445] w=0.2945 to align
# Constraint # added constraint: constraint((T0376)D193.CB, (T0376)T210.CB) [> 3.0148 = 5.0248 < 6.5322] w=0.2925 to align
# Constraint # added constraint: constraint((T0376)G168.CA, (T0376)V196.CB) [> 3.6434 = 6.0723 < 7.8940] w=0.2925 to align
# Constraint # added constraint: constraint((T0376)F163.CB, (T0376)I190.CB) [> 4.0409 = 6.7348 < 8.7552] w=0.2924 to align
# Constraint # added constraint: constraint((T0376)L28.CB, (T0376)Y45.CB) [> 4.0136 = 6.6893 < 8.6961] w=0.2922 to align
# Constraint # added constraint: constraint((T0376)I104.CB, (T0376)I135.CB) [> 4.4446 = 7.4077 < 9.6300] w=0.2916 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)G47.CA) [> 3.8102 = 6.3503 < 8.2554] w=0.2888 to align
# Constraint # added constraint: constraint((T0376)G77.CA, (T0376)Y136.CB) [> 4.5498 = 7.5830 < 9.8579] w=0.2863 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)G63.CA) [> 4.1184 = 6.8639 < 8.9231] w=0.2863 to align
# Constraint # added constraint: constraint((T0376)R154.CB, (T0376)F163.CB) [> 3.9341 = 6.5568 < 8.5239] w=0.2863 to align
# Constraint # added constraint: constraint((T0376)V201.CB, (T0376)C224.CB) [> 3.8763 = 6.4604 < 8.3986] w=0.2857 to align
# Constraint # added constraint: constraint((T0376)F150.CB, (T0376)R182.CB) [> 3.8094 = 6.3490 < 8.2537] w=0.2832 to align
# Constraint # added constraint: constraint((T0376)K33.CB, (T0376)A70.CB) [> 3.7230 = 6.2050 < 8.0666] w=0.2817 to align
# Constraint # added constraint: constraint((T0376)G32.CA, (T0376)A70.CB) [> 3.5289 = 5.8815 < 7.6459] w=0.2817 to align
# Constraint # added constraint: constraint((T0376)R106.CB, (T0376)N137.CB) [> 4.0443 = 6.7406 < 8.7627] w=0.2783 to align
# Constraint # added constraint: constraint((T0376)S48.CB, (T0376)Y141.CB) [> 3.9949 = 6.6582 < 8.6557] w=0.2780 to align
# Constraint # added constraint: constraint((T0376)K31.CB, (T0376)M268.CB) [> 4.2003 = 7.0004 < 9.1006] w=0.2780 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)L55.CB) [> 4.2308 = 7.0512 < 9.1666] w=0.2779 to align
# Constraint # added constraint: constraint((T0376)V107.CB, (T0376)F143.CB) [> 4.4075 = 7.3459 < 9.5497] w=0.2776 to align
# Constraint # added constraint: constraint((T0376)G8.CA, (T0376)C224.CB) [> 3.5430 = 5.9050 < 7.6764] w=0.2774 to align
# Constraint # added constraint: constraint((T0376)E165.CB, (T0376)N178.CB) [> 4.1791 = 6.9652 < 9.0548] w=0.2772 to align
# Constraint # added constraint: constraint((T0376)G47.CA, (T0376)R60.CB) [> 3.8068 = 6.3447 < 8.2481] w=0.2769 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)R154.CB) [> 3.6802 = 6.1337 < 7.9739] w=0.2765 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)T210.CB) [> 4.0414 = 6.7357 < 8.7564] w=0.2742 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)V161.CB) [> 3.7377 = 6.2295 < 8.0984] w=0.2727 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)M268.CB) [> 4.0613 = 6.7689 < 8.7995] w=0.2703 to align
# Constraint # added constraint: constraint((T0376)G100.CA, (T0376)A128.CB) [> 4.4870 = 7.4784 < 9.7219] w=0.2694 to align
# Constraint # added constraint: constraint((T0376)N82.CB, (T0376)R106.CB) [> 4.4092 = 7.3487 < 9.5533] w=0.2691 to align
# Constraint # added constraint: constraint((T0376)G79.CA, (T0376)P105.CB) [> 3.8817 = 6.4695 < 8.4103] w=0.2688 to align
# Constraint # added constraint: constraint((T0376)D57.CB, (T0376)S85.CB) [> 3.5942 = 5.9903 < 7.7874] w=0.2680 to align
# Constraint # added constraint: constraint((T0376)V29.CB, (T0376)G63.CA) [> 4.2054 = 7.0091 < 9.1118] w=0.2664 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)C46.CB) [> 4.1349 = 6.8915 < 8.9590] w=0.2651 to align
# Constraint # added constraint: constraint((T0376)I190.CB, (T0376)C203.CB) [> 4.4586 = 7.4310 < 9.6602] w=0.2629 to align
# Constraint # added constraint: constraint((T0376)G47.CA, (T0376)G79.CA) [> 4.2369 = 7.0616 < 9.1800] w=0.2615 to align
# Constraint # added constraint: constraint((T0376)P139.CB, (T0376)F166.CB) [> 4.1649 = 6.9414 < 9.0239] w=0.2613 to align
# Constraint # added constraint: constraint((T0376)G79.CA, (T0376)Y136.CB) [> 4.5846 = 7.6410 < 9.9333] w=0.2611 to align
# Constraint # added constraint: constraint((T0376)L160.CB, (T0376)T187.CB) [> 4.2993 = 7.1656 < 9.3152] w=0.2584 to align
# Constraint # added constraint: constraint((T0376)A86.CB, (T0376)A127.CB) [> 4.3611 = 7.2684 < 9.4490] w=0.2559 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)V134.CB) [> 4.3918 = 7.3197 < 9.5157] w=0.2548 to align
# Constraint # added constraint: constraint((T0376)D193.CB, (T0376)A208.CB) [> 4.2777 = 7.1294 < 9.2683] w=0.2542 to align
# Constraint # added constraint: constraint((T0376)T210.CB, (T0376)L223.CB) [> 3.6311 = 6.0518 < 7.8673] w=0.2536 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)P73.CB) [> 3.5980 = 5.9967 < 7.7957] w=0.2533 to align
# Constraint # added constraint: constraint((T0376)G47.CA, (T0376)T78.CB) [> 3.6715 = 6.1191 < 7.9549] w=0.2471 to align
# Constraint # added constraint: constraint((T0376)K118.CB, (T0376)E156.CB) [> 3.0712 = 5.1187 < 6.6544] w=0.2466 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)C46.CB) [> 3.4497 = 5.7496 < 7.4745] w=0.2463 to align
# Constraint # added constraint: constraint((T0376)F151.CB, (T0376)N178.CB) [> 3.9961 = 6.6602 < 8.6582] w=0.2463 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)G211.CA) [> 4.0695 = 6.7825 < 8.8172] w=0.2460 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)V44.CB) [> 3.6249 = 6.0415 < 7.8539] w=0.2453 to align
# Constraint # added constraint: constraint((T0376)A90.CB, (T0376)P129.CB) [> 3.5512 = 5.9186 < 7.6941] w=0.2423 to align
# Constraint # added constraint: constraint((T0376)S138.CB, (T0376)G191.CA) [> 4.2794 = 7.1324 < 9.2721] w=0.2382 to align
# Constraint # added constraint: constraint((T0376)V197.CB, (T0376)S227.CB) [> 4.0375 = 6.7291 < 8.7479] w=0.2380 to align
# Constraint # added constraint: constraint((T0376)Y136.CB, (T0376)G162.CA) [> 3.8338 = 6.3898 < 8.3067] w=0.2380 to align
# Constraint # added constraint: constraint((T0376)G47.CA, (T0376)M102.CB) [> 4.3378 = 7.2297 < 9.3987] w=0.2369 to align
# Constraint # added constraint: constraint((T0376)Y136.CB, (T0376)G167.CA) [> 3.5951 = 5.9917 < 7.7893] w=0.2361 to align
# Constraint # added constraint: constraint((T0376)V215.CB, (T0376)M267.CB) [> 3.0587 = 5.0978 < 6.6271] w=0.2316 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)V161.CB) [> 3.9428 = 6.5714 < 8.5428] w=0.2316 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)I75.CB) [> 4.4822 = 7.4703 < 9.7114] w=0.2316 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)I212.CB) [> 2.9113 = 4.8521 < 6.3078] w=0.2313 to align
# Constraint # added constraint: constraint((T0376)L226.CB, (T0376)R238.CB) [> 3.4980 = 5.8300 < 7.5789] w=0.2309 to align
# Constraint # added constraint: constraint((T0376)V134.CB, (T0376)L188.CB) [> 4.0896 = 6.8160 < 8.8608] w=0.2306 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)P73.CB) [> 4.2100 = 7.0166 < 9.1216] w=0.2273 to align
# Constraint # added constraint: constraint((T0376)L226.CB, (T0376)A235.CB) [> 3.3395 = 5.5659 < 7.2357] w=0.2234 to align
# Constraint # added constraint: constraint((T0376)L108.CB, (T0376)G142.CA) [> 4.0810 = 6.8017 < 8.8422] w=0.2233 to align
# Constraint # added constraint: constraint((T0376)Y174.CB, (T0376)C203.CB) [> 3.2269 = 5.3782 < 6.9917] w=0.2229 to align
# Constraint # added constraint: constraint((T0376)S48.CB, (T0376)T78.CB) [> 3.7412 = 6.2353 < 8.1059] w=0.2223 to align
# Constraint # added constraint: constraint((T0376)L223.CB, (T0376)A239.CB) [> 3.3273 = 5.5455 < 7.2091] w=0.2162 to align
# Constraint # added constraint: constraint((T0376)V196.CB, (T0376)A208.CB) [> 3.9180 = 6.5300 < 8.4890] w=0.2158 to align
# Constraint # added constraint: constraint((T0376)S48.CB, (T0376)G79.CA) [> 3.9739 = 6.6232 < 8.6102] w=0.2158 to align
# Constraint # added constraint: constraint((T0376)V161.CB, (T0376)E185.CB) [> 4.1309 = 6.8849 < 8.9504] w=0.2154 to align
# Constraint # added constraint: constraint((T0376)V201.CB, (T0376)Q228.CB) [> 4.2723 = 7.1205 < 9.2567] w=0.2085 to align
# Constraint # added constraint: constraint((T0376)K265.CB, (T0376)Y276.CB) [> 3.1905 = 5.3174 < 6.9127] w=0.2085 to align
# Constraint # added constraint: constraint((T0376)D51.CB, (T0376)L278.CB) [> 4.0697 = 6.7828 < 8.8176] w=0.2085 to align
# Constraint # added constraint: constraint((T0376)D51.CB, (T0376)H279.CB) [> 3.4140 = 5.6900 < 7.3970] w=0.2085 to align
# Constraint # added constraint: constraint((T0376)I212.CB, (T0376)L251.CB) [> 3.6591 = 6.0985 < 7.9280] w=0.2085 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)G211.CA) [> 3.5974 = 5.9956 < 7.7943] w=0.2085 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)G213.CA) [> 4.4842 = 7.4736 < 9.7157] w=0.2082 to align
# Constraint # added constraint: constraint((T0376)M189.CB, (T0376)F200.CB) [> 3.5742 = 5.9571 < 7.7442] w=0.2077 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)V197.CB) [> 4.2312 = 7.0520 < 9.1676] w=0.2062 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)L149.CB) [> 3.2806 = 5.4676 < 7.1079] w=0.2053 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)G207.CA) [> 3.6300 = 6.0500 < 7.8650] w=0.2043 to align
# Constraint # added constraint: constraint((T0376)R18.CB, (T0376)A27.CB) [> 3.5800 = 5.9667 < 7.7566] w=0.2043 to align
# Constraint # added constraint: constraint((T0376)R106.CB, (T0376)Y136.CB) [> 3.5693 = 5.9488 < 7.7334] w=0.2012 to align
# Constraint # added constraint: constraint((T0376)G47.CA, (T0376)V76.CB) [> 4.2137 = 7.0228 < 9.1297] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)D51.CB, (T0376)E282.CB) [> 4.3064 = 7.1773 < 9.3305] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)E34.CB, (T0376)D273.CB) [> 3.3922 = 5.6537 < 7.3498] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)K31.CB, (T0376)D273.CB) [> 3.4866 = 5.8110 < 7.5543] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)R21.CB, (T0376)H279.CB) [> 3.0616 = 5.1027 < 6.6335] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)R21.CB, (T0376)T277.CB) [> 3.7473 = 6.2456 < 8.1192] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)C17.CB, (T0376)H279.CB) [> 3.8732 = 6.4553 < 8.3919] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)C17.CB, (T0376)L278.CB) [> 4.2672 = 7.1121 < 9.2457] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)C17.CB, (T0376)T277.CB) [> 2.8238 = 4.7063 < 6.1181] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)K265.CB) [> 3.5619 = 5.9365 < 7.7175] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)L270.CB, (T0376)F298.CB) [> 3.2593 = 5.4322 < 7.0619] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)L270.CB, (T0376)E295.CB) [> 3.7159 = 6.1931 < 8.0510] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)M267.CB, (T0376)F298.CB) [> 3.3642 = 5.6071 < 7.2892] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)M267.CB, (T0376)V294.CB) [> 3.3743 = 5.6238 < 7.3109] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)Y266.CB, (T0376)V294.CB) [> 3.1388 = 5.2313 < 6.8007] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)Y266.CB, (T0376)R291.CB) [> 3.8857 = 6.4761 < 8.4190] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)Y266.CB, (T0376)L286.CB) [> 3.0241 = 5.0401 < 6.5522] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)K265.CB, (T0376)L278.CB) [> 4.0033 = 6.6721 < 8.6737] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)E219.CB, (T0376)L242.CB) [> 3.2805 = 5.4674 < 7.1077] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)L216.CB, (T0376)A247.CB) [> 3.8080 = 6.3466 < 8.2506] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)V215.CB, (T0376)M268.CB) [> 3.6446 = 6.0743 < 7.8965] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)N214.CB, (T0376)M268.CB) [> 3.7179 = 6.1965 < 8.0554] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)L54.CB, (T0376)H279.CB) [> 2.5997 = 4.3329 < 5.6327] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)A208.CB, (T0376)C224.CB) [> 4.0111 = 6.6851 < 8.6906] w=0.2008 to align
# Constraint # added constraint: constraint((T0376)G100.CA, (T0376)V161.CB) [> 4.4768 = 7.4614 < 9.6998] w=0.2007 to align
# Constraint # added constraint: constraint((T0376)E165.CB, (T0376)A205.CB) [> 4.4268 = 7.3779 < 9.5913] w=0.2007 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)L248.CB) [> 3.3071 = 5.5118 < 7.1654] w=0.2006 to align
# Constraint # added constraint: constraint((T0376)E165.CB, (T0376)F200.CB) [> 4.4769 = 7.4614 < 9.6999] w=0.2006 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)R146.CB) [> 3.3339 = 5.5566 < 7.2235] w=0.1997 to align
# Constraint # added constraint: constraint((T0376)I75.CB, (T0376)I209.CB) [> 4.7372 = 7.8954 < 10.2640] w=0.1996 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)G162.CA) [> 4.3340 = 7.2233 < 9.3903] w=0.1994 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)L223.CB) [> 3.4262 = 5.7103 < 7.4234] w=0.1994 to align
# Constraint # added constraint: constraint((T0376)D193.CB, (T0376)G211.CA) [> 3.6725 = 6.1208 < 7.9571] w=0.1990 to align
# Constraint # added constraint: constraint((T0376)L223.CB, (T0376)L244.CB) [> 3.9159 = 6.5266 < 8.4845] w=0.1930 to align
# Constraint # added constraint: constraint((T0376)V250.CB, (T0376)Q297.CB) [> 3.2076 = 5.3460 < 6.9498] w=0.1930 to align
# Constraint # added constraint: constraint((T0376)L216.CB, (T0376)F301.CB) [> 3.8077 = 6.3462 < 8.2500] w=0.1930 to align
# Constraint # added constraint: constraint((T0376)P105.CB, (T0376)T145.CB) [> 3.8142 = 6.3570 < 8.2641] w=0.1930 to align
# Constraint # added constraint: constraint((T0376)M49.CB, (T0376)V261.CB) [> 3.8092 = 6.3487 < 8.2533] w=0.1930 to align
# Constraint # added constraint: constraint((T0376)R110.CB, (T0376)F143.CB) [> 3.4782 = 5.7970 < 7.5361] w=0.1930 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)G213.CA) [> 4.4284 = 7.3806 < 9.5948] w=0.1929 to align
# Constraint # added constraint: constraint((T0376)G191.CA, (T0376)A205.CB) [> 3.6861 = 6.1434 < 7.9865] w=0.1918 to align
# Constraint # added constraint: constraint((T0376)F150.CB, (T0376)V186.CB) [> 4.1949 = 6.9915 < 9.0889] w=0.1909 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)G47.CA) [> 4.3050 = 7.1750 < 9.3276] w=0.1890 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)Y45.CB) [> 3.7015 = 6.1692 < 8.0199] w=0.1868 to align
# Constraint # added constraint: constraint((T0376)S48.CB, (T0376)S138.CB) [> 4.4821 = 7.4702 < 9.7113] w=0.1853 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)K265.CB) [> 4.4972 = 7.4954 < 9.7440] w=0.1853 to align
# Constraint # added constraint: constraint((T0376)R18.CB, (T0376)T277.CB) [> 4.0340 = 6.7234 < 8.7404] w=0.1853 to align
# Constraint # added constraint: constraint((T0376)P105.CB, (T0376)F143.CB) [> 2.9136 = 4.8560 < 6.3128] w=0.1853 to align
# Constraint # added constraint: constraint((T0376)Q117.CB, (T0376)F143.CB) [> 4.3794 = 7.2990 < 9.4888] w=0.1853 to align
# Constraint # added constraint: constraint((T0376)K265.CB, (T0376)T277.CB) [> 4.4878 = 7.4797 < 9.7236] w=0.1853 to align
# Constraint # added constraint: constraint((T0376)L270.CB, (T0376)V294.CB) [> 4.2765 = 7.1276 < 9.2659] w=0.1853 to align
# Constraint # added constraint: constraint((T0376)L54.CB, (T0376)E282.CB) [> 4.3624 = 7.2706 < 9.4518] w=0.1853 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)P132.CB) [> 4.2563 = 7.0939 < 9.2220] w=0.1853 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)G162.CA) [> 4.0658 = 6.7764 < 8.8093] w=0.1853 to align
# Constraint # added constraint: constraint((T0376)H198.CB, (T0376)A235.CB) [> 3.7441 = 6.2401 < 8.1121] w=0.1850 to align
# Constraint # added constraint: constraint((T0376)S227.CB, (T0376)A237.CB) [> 3.1781 = 5.2969 < 6.8860] w=0.1846 to align
# Constraint # added constraint: constraint((T0376)V107.CB, (T0376)S138.CB) [> 4.0476 = 6.7460 < 8.7698] w=0.1842 to align
# Constraint # added constraint: constraint((T0376)T187.CB, (T0376)A205.CB) [> 3.6878 = 6.1463 < 7.9901] w=0.1837 to align
# Constraint # added constraint: constraint((T0376)P105.CB, (T0376)P139.CB) [> 4.1136 = 6.8561 < 8.9129] w=0.1831 to align
# Constraint # added constraint: constraint((T0376)V161.CB, (T0376)M189.CB) [> 3.1319 = 5.2199 < 6.7859] w=0.1812 to align
# Constraint # added constraint: constraint((T0376)S48.CB, (T0376)G77.CA) [> 3.7929 = 6.3215 < 8.2179] w=0.1776 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)M268.CB) [> 3.6810 = 6.1350 < 7.9756] w=0.1776 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)V261.CB) [> 3.8897 = 6.4829 < 8.4277] w=0.1776 to align
# Constraint # added constraint: constraint((T0376)R106.CB, (T0376)F143.CB) [> 4.4178 = 7.3630 < 9.5719] w=0.1776 to align
# Constraint # added constraint: constraint((T0376)A80.CB, (T0376)V107.CB) [> 4.2160 = 7.0267 < 9.1347] w=0.1771 to align
# Constraint # added constraint: constraint((T0376)G79.CA, (T0376)A90.CB) [> 4.2991 = 7.1651 < 9.3146] w=0.1770 to align
# Constraint # added constraint: constraint((T0376)I104.CB, (T0376)N137.CB) [> 4.3032 = 7.1720 < 9.3236] w=0.1765 to align
# Constraint # added constraint: constraint((T0376)P139.CB, (T0376)G168.CA) [> 4.0324 = 6.7207 < 8.7369] w=0.1745 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)S41.CB) [> 3.8439 = 6.4065 < 8.3284] w=0.1719 to align
# Constraint # added constraint: constraint((T0376)V81.CB, (T0376)H120.CB) [> 4.2536 = 7.0892 < 9.2160] w=0.1713 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)A208.CB) [> 4.0704 = 6.7841 < 8.8193] w=0.1699 to align
# Constraint # added constraint: constraint((T0376)L55.CB, (T0376)H279.CB) [> 4.5831 = 7.6386 < 9.9302] w=0.1699 to align
# Constraint # added constraint: constraint((T0376)Q19.CB, (T0376)T277.CB) [> 3.7442 = 6.2403 < 8.1124] w=0.1699 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)T187.CB) [> 3.2158 = 5.3597 < 6.9676] w=0.1699 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)D51.CB) [> 4.7593 = 7.9323 < 10.3119] w=0.1698 to align
# Constraint # added constraint: constraint((T0376)V107.CB, (T0376)N137.CB) [> 4.1147 = 6.8578 < 8.9151] w=0.1691 to align
# Constraint # added constraint: constraint((T0376)D193.CB, (T0376)G213.CA) [> 4.3845 = 7.3074 < 9.4997] w=0.1691 to align
# Constraint # added constraint: constraint((T0376)L226.CB, (T0376)A237.CB) [> 2.9570 = 4.9283 < 6.4068] w=0.1688 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)G32.CA) [> 4.3133 = 7.1888 < 9.3455] w=0.1684 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)M102.CB) [> 4.6460 = 7.7434 < 10.0664] w=0.1682 to align
# Constraint # added constraint: constraint((T0376)S7.CB, (T0376)A42.CB) [> 3.5742 = 5.9570 < 7.7441] w=0.1678 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)K99.CB) [> 4.1700 = 6.9499 < 9.0349] w=0.1622 to align
# Constraint # added constraint: constraint((T0376)V215.CB, (T0376)F264.CB) [> 3.7160 = 6.1934 < 8.0514] w=0.1622 to align
# Constraint # added constraint: constraint((T0376)A86.CB, (T0376)R106.CB) [> 4.6480 = 7.7467 < 10.0708] w=0.1622 to align
# Constraint # added constraint: constraint((T0376)M49.CB, (T0376)N214.CB) [> 4.3717 = 7.2862 < 9.4721] w=0.1622 to align
# Constraint # added constraint: constraint((T0376)F254.CB, (T0376)Y263.CB) [> 2.6989 = 4.4982 < 5.8477] w=0.1622 to align
# Constraint # added constraint: constraint((T0376)H222.CB, (T0376)R238.CB) [> 3.7445 = 6.2408 < 8.1130] w=0.1621 to align
# Constraint # added constraint: constraint((T0376)G162.CA, (T0376)I190.CB) [> 3.9883 = 6.6472 < 8.6413] w=0.1619 to align
# Constraint # added constraint: constraint((T0376)M102.CB, (T0376)I209.CB) [> 4.5564 = 7.5941 < 9.8723] w=0.1613 to align
# Constraint # added constraint: constraint((T0376)D193.CB, (T0376)I209.CB) [> 4.0145 = 6.6908 < 8.6981] w=0.1613 to align
# Constraint # added constraint: constraint((T0376)L251.CB, (T0376)L260.CB) [> 3.3408 = 5.5680 < 7.2384] w=0.1608 to align
# Constraint # added constraint: constraint((T0376)P139.CB, (T0376)Y174.CB) [> 3.1831 = 5.3052 < 6.8968] w=0.1604 to align
# Constraint # added constraint: constraint((T0376)G191.CA, (T0376)G211.CA) [> 4.3740 = 7.2900 < 9.4769] w=0.1597 to align
# Constraint # added constraint: constraint((T0376)Y140.CB, (T0376)G168.CA) [> 4.5313 = 7.5522 < 9.8178] w=0.1584 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)V44.CB) [> 3.5191 = 5.8651 < 7.6247] w=0.1582 to align
# Constraint # added constraint: constraint((T0376)G47.CA, (T0376)I104.CB) [> 4.5344 = 7.5573 < 9.8245] w=0.1569 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)T210.CB) [> 4.0660 = 6.7767 < 8.8097] w=0.1568 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)K31.CB) [> 4.2268 = 7.0446 < 9.1580] w=0.1565 to align
# Constraint # added constraint: constraint((T0376)S7.CB, (T0376)T187.CB) [> 3.7879 = 6.3132 < 8.2071] w=0.1544 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)F264.CB) [> 3.6957 = 6.1596 < 8.0074] w=0.1544 to align
# Constraint # added constraint: constraint((T0376)G211.CA, (T0376)F264.CB) [> 3.9118 = 6.5197 < 8.4756] w=0.1544 to align
# Constraint # added constraint: constraint((T0376)N214.CB, (T0376)F264.CB) [> 3.2494 = 5.4157 < 7.0404] w=0.1544 to align
# Constraint # added constraint: constraint((T0376)L262.CB, (T0376)L278.CB) [> 3.3247 = 5.5412 < 7.2036] w=0.1544 to align
# Constraint # added constraint: constraint((T0376)L262.CB, (T0376)L286.CB) [> 2.9786 = 4.9644 < 6.4537] w=0.1544 to align
# Constraint # added constraint: constraint((T0376)Y263.CB, (T0376)L286.CB) [> 3.9773 = 6.6287 < 8.6174] w=0.1544 to align
# Constraint # added constraint: constraint((T0376)Y266.CB, (T0376)Q290.CB) [> 4.4101 = 7.3502 < 9.5552] w=0.1544 to align
# Constraint # added constraint: constraint((T0376)K271.CB, (T0376)F298.CB) [> 3.8249 = 6.3748 < 8.2872] w=0.1544 to align
# Constraint # added constraint: constraint((T0376)I190.CB, (T0376)T210.CB) [> 4.5837 = 7.6396 < 9.9314] w=0.1544 to align
# Constraint # added constraint: constraint((T0376)V134.CB, (T0376)I190.CB) [> 4.2301 = 7.0502 < 9.1653] w=0.1543 to align
# Constraint # added constraint: constraint((T0376)V197.CB, (T0376)V220.CB) [> 3.5917 = 5.9861 < 7.7819] w=0.1543 to align
# Constraint # added constraint: constraint((T0376)D193.CB, (T0376)V220.CB) [> 4.3562 = 7.2603 < 9.4383] w=0.1543 to align
# Constraint # added constraint: constraint((T0376)M172.CB, (T0376)V196.CB) [> 3.8914 = 6.4857 < 8.4314] w=0.1542 to align
# Constraint # added constraint: constraint((T0376)V196.CB, (T0376)L223.CB) [> 3.8519 = 6.4198 < 8.3457] w=0.1542 to align
# Constraint # added constraint: constraint((T0376)H198.CB, (T0376)R238.CB) [> 3.8059 = 6.3431 < 8.2460] w=0.1541 to align
# Constraint # added constraint: constraint((T0376)P258.CB, (T0376)E282.CB) [> 4.0350 = 6.7250 < 8.7425] w=0.1541 to align
# Constraint # added constraint: constraint((T0376)L188.CB, (T0376)F200.CB) [> 4.1172 = 6.8620 < 8.9206] w=0.1538 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)Q246.CB) [> 3.2899 = 5.4832 < 7.1282] w=0.1536 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)L226.CB) [> 3.0041 = 5.0069 < 6.5090] w=0.1534 to align
# Constraint # added constraint: constraint((T0376)H198.CB, (T0376)L226.CB) [> 4.1433 = 6.9055 < 8.9772] w=0.1531 to align
# Constraint # added constraint: constraint((T0376)V161.CB, (T0376)T206.CB) [> 4.3346 = 7.2243 < 9.3916] w=0.1528 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)G211.CA) [> 3.7677 = 6.2795 < 8.1634] w=0.1512 to align
# Constraint # added constraint: constraint((T0376)M172.CB, (T0376)V192.CB) [> 3.9209 = 6.5348 < 8.4952] w=0.1509 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)Y45.CB) [> 4.1533 = 6.9221 < 8.9987] w=0.1493 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)A42.CB) [> 4.0154 = 6.6923 < 8.7000] w=0.1490 to align
# Constraint # added constraint: constraint((T0376)V215.CB, (T0376)V261.CB) [> 3.1993 = 5.3322 < 6.9319] w=0.1467 to align
# Constraint # added constraint: constraint((T0376)D51.CB, (T0376)V261.CB) [> 4.1403 = 6.9005 < 8.9707] w=0.1467 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)L223.CB) [> 4.2787 = 7.1312 < 9.2705] w=0.1467 to align
# Constraint # added constraint: constraint((T0376)M189.CB, (T0376)G204.CA) [> 4.1741 = 6.9569 < 9.0440] w=0.1466 to align
# Constraint # added constraint: constraint((T0376)A170.CB, (T0376)V196.CB) [> 3.9369 = 6.5616 < 8.5301] w=0.1466 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)L251.CB) [> 3.3161 = 5.5269 < 7.1850] w=0.1462 to align
# Constraint # added constraint: constraint((T0376)K31.CB, (T0376)V43.CB) [> 3.7206 = 6.2010 < 8.0613] w=0.1461 to align
# Constraint # added constraint: constraint((T0376)L226.CB, (T0376)R240.CB) [> 3.9279 = 6.5465 < 8.5105] w=0.1459 to align
# Constraint # added constraint: constraint((T0376)M172.CB, (T0376)A195.CB) [> 3.9541 = 6.5901 < 8.5672] w=0.1455 to align
# Constraint # added constraint: constraint((T0376)G211.CA, (T0376)S227.CB) [> 3.3919 = 5.6532 < 7.3491] w=0.1455 to align
# Constraint # added constraint: constraint((T0376)L188.CB, (T0376)I209.CB) [> 3.5710 = 5.9517 < 7.7372] w=0.1453 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)C46.CB) [> 3.9343 = 6.5572 < 8.5244] w=0.1446 to align
# Constraint # added constraint: constraint((T0376)L101.CB, (T0376)P129.CB) [> 4.0818 = 6.8030 < 8.8439] w=0.1421 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)I209.CB) [> 3.0066 = 5.0111 < 6.5144] w=0.1419 to align
# Constraint # added constraint: constraint((T0376)C17.CB, (T0376)L28.CB) [> 3.7391 = 6.2319 < 8.1015] w=0.1418 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)I209.CB) [> 3.6944 = 6.1574 < 8.0046] w=0.1404 to align
# Constraint # added constraint: constraint((T0376)V261.CB, (T0376)L278.CB) [> 3.7086 = 6.1809 < 8.0352] w=0.1390 to align
# Constraint # added constraint: constraint((T0376)F254.CB, (T0376)V294.CB) [> 4.1329 = 6.8881 < 8.9546] w=0.1390 to align
# Constraint # added constraint: constraint((T0376)R18.CB, (T0376)E275.CB) [> 4.0151 = 6.6919 < 8.6994] w=0.1390 to align
# Constraint # added constraint: constraint((T0376)V215.CB, (T0376)F298.CB) [> 4.3672 = 7.2786 < 9.4622] w=0.1390 to align
# Constraint # added constraint: constraint((T0376)Y266.CB, (T0376)Y276.CB) [> 2.7407 = 4.5678 < 5.9381] w=0.1390 to align
# Constraint # added constraint: constraint((T0376)Y276.CB, (T0376)L286.CB) [> 4.2303 = 7.0506 < 9.1657] w=0.1390 to align
# Constraint # added constraint: constraint((T0376)N214.CB, (T0376)V261.CB) [> 3.9951 = 6.6585 < 8.6560] w=0.1390 to align
# Constraint # added constraint: constraint((T0376)N214.CB, (T0376)M267.CB) [> 4.4839 = 7.4732 < 9.7151] w=0.1390 to align
# Constraint # added constraint: constraint((T0376)G79.CA, (T0376)L101.CB) [> 4.6117 = 7.6862 < 9.9920] w=0.1390 to align
# Constraint # added constraint: constraint((T0376)G111.CA, (T0376)F143.CB) [> 3.6861 = 6.1436 < 7.9866] w=0.1389 to align
# Constraint # added constraint: constraint((T0376)H198.CB, (T0376)L244.CB) [> 3.0651 = 5.1085 < 6.6410] w=0.1388 to align
# Constraint # added constraint: constraint((T0376)D38.CB, (T0376)G213.CA) [> 4.2553 = 7.0921 < 9.2198] w=0.1388 to align
# Constraint # added constraint: constraint((T0376)L223.CB, (T0376)A237.CB) [> 3.2296 = 5.3827 < 6.9975] w=0.1388 to align
# Constraint # added constraint: constraint((T0376)L223.CB, (T0376)A235.CB) [> 3.1972 = 5.3288 < 6.9274] w=0.1387 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)V43.CB) [> 3.5606 = 5.9344 < 7.7147] w=0.1387 to align
# Constraint # added constraint: constraint((T0376)G207.CA, (T0376)S227.CB) [> 4.2647 = 7.1079 < 9.2402] w=0.1384 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)G47.CA) [> 3.3909 = 5.6515 < 7.3470] w=0.1384 to align
# Constraint # added constraint: constraint((T0376)A208.CB, (T0376)L223.CB) [> 4.1515 = 6.9192 < 8.9949] w=0.1380 to align
# Constraint # added constraint: constraint((T0376)L188.CB, (T0376)A208.CB) [> 3.8667 = 6.4444 < 8.3778] w=0.1376 to align
# Constraint # added constraint: constraint((T0376)M102.CB, (T0376)M189.CB) [> 4.5585 = 7.5975 < 9.8767] w=0.1375 to align
# Constraint # added constraint: constraint((T0376)A80.CB, (T0376)M102.CB) [> 4.2847 = 7.1412 < 9.2835] w=0.1372 to align
# Constraint # added constraint: constraint((T0376)I75.CB, (T0376)P132.CB) [> 4.4605 = 7.4341 < 9.6643] w=0.1368 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)G211.CA) [> 4.0456 = 6.7426 < 8.7654] w=0.1367 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)A208.CB) [> 3.9388 = 6.5647 < 8.5342] w=0.1364 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)L55.CB) [> 4.0330 = 6.7216 < 8.7381] w=0.1361 to align
# Constraint # added constraint: constraint((T0376)M49.CB, (T0376)G79.CA) [> 3.8046 = 6.3409 < 8.2432] w=0.1317 to align
# Constraint # added constraint: constraint((T0376)I190.CB, (T0376)G199.CA) [> 4.2235 = 7.0391 < 9.1508] w=0.1313 to align
# Constraint # added constraint: constraint((T0376)Q246.CB, (T0376)F301.CB) [> 3.8379 = 6.3965 < 8.3155] w=0.1313 to align
# Constraint # added constraint: constraint((T0376)S253.CB, (T0376)Y263.CB) [> 4.2306 = 7.0510 < 9.1664] w=0.1313 to align
# Constraint # added constraint: constraint((T0376)V201.CB, (T0376)L223.CB) [> 4.3139 = 7.1898 < 9.3468] w=0.1313 to align
# Constraint # added constraint: constraint((T0376)G8.CA, (T0376)M189.CB) [> 4.6194 = 7.6990 < 10.0087] w=0.1313 to align
# Constraint # added constraint: constraint((T0376)I190.CB, (T0376)T206.CB) [> 4.0413 = 6.7354 < 8.7561] w=0.1312 to align
# Constraint # added constraint: constraint((T0376)V107.CB, (T0376)A144.CB) [> 4.1204 = 6.8674 < 8.9276] w=0.1310 to align
# Constraint # added constraint: constraint((T0376)L108.CB, (T0376)F143.CB) [> 3.5896 = 5.9826 < 7.7774] w=0.1307 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)G211.CA) [> 3.0633 = 5.1055 < 6.6371] w=0.1295 to align
# Constraint # added constraint: constraint((T0376)T83.CB, (T0376)A116.CB) [> 4.0107 = 6.6845 < 8.6899] w=0.1294 to align
# Constraint # added constraint: constraint((T0376)S7.CB, (T0376)A208.CB) [> 4.4238 = 7.3729 < 9.5848] w=0.1293 to align
# Constraint # added constraint: constraint((T0376)G162.CA, (T0376)T206.CB) [> 4.4299 = 7.3831 < 9.5980] w=0.1292 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)L149.CB) [> 4.3139 = 7.1898 < 9.3468] w=0.1291 to align
# Constraint # added constraint: constraint((T0376)V250.CB, (T0376)L260.CB) [> 3.4219 = 5.7032 < 7.4142] w=0.1257 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)Y45.CB) [> 3.6345 = 6.0576 < 7.8748] w=0.1245 to align
# Constraint # added constraint: constraint((T0376)L54.CB, (T0376)N281.CB) [> 4.6761 = 7.7936 < 10.1316] w=0.1235 to align
# Constraint # added constraint: constraint((T0376)G191.CA, (T0376)G207.CA) [> 3.7763 = 6.2938 < 8.1820] w=0.1235 to align
# Constraint # added constraint: constraint((T0376)I212.CB, (T0376)L242.CB) [> 3.8836 = 6.4727 < 8.4145] w=0.1235 to align
# Constraint # added constraint: constraint((T0376)A195.CB, (T0376)E243.CB) [> 3.6124 = 6.0207 < 7.8269] w=0.1234 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)T145.CB) [> 3.9982 = 6.6636 < 8.6627] w=0.1233 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)Y45.CB) [> 3.9244 = 6.5406 < 8.5028] w=0.1231 to align
# Constraint # added constraint: constraint((T0376)V87.CB, (T0376)H120.CB) [> 3.3596 = 5.5994 < 7.2792] w=0.1229 to align
# Constraint # added constraint: constraint((T0376)S227.CB, (T0376)A239.CB) [> 3.0035 = 5.0058 < 6.5075] w=0.1226 to align
# Constraint # added constraint: constraint((T0376)V186.CB, (T0376)T206.CB) [> 3.0335 = 5.0558 < 6.5725] w=0.1223 to align
# Constraint # added constraint: constraint((T0376)P139.CB, (T0376)D171.CB) [> 3.8398 = 6.3996 < 8.3195] w=0.1198 to align
# Constraint # added constraint: constraint((T0376)C17.CB, (T0376)V44.CB) [> 3.8286 = 6.3810 < 8.2953] w=0.1191 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)V261.CB) [> 4.1913 = 6.9856 < 9.0812] w=0.1175 to align
# Constraint # added constraint: constraint((T0376)G8.CA, (T0376)K225.CB) [> 4.4573 = 7.4289 < 9.6576] w=0.1158 to align
# Constraint # added constraint: constraint((T0376)V250.CB, (T0376)V294.CB) [> 4.0165 = 6.6942 < 8.7025] w=0.1158 to align
# Constraint # added constraint: constraint((T0376)P23.CB, (T0376)L55.CB) [> 4.6877 = 7.8128 < 10.1566] w=0.1158 to align
# Constraint # added constraint: constraint((T0376)E219.CB, (T0376)L244.CB) [> 3.5567 = 5.9279 < 7.7062] w=0.1158 to align
# Constraint # added constraint: constraint((T0376)L223.CB, (T0376)R240.CB) [> 2.8651 = 4.7752 < 6.2077] w=0.1158 to align
# Constraint # added constraint: constraint((T0376)E219.CB, (T0376)A247.CB) [> 3.5586 = 5.9310 < 7.7103] w=0.1158 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)I190.CB) [> 4.0829 = 6.8049 < 8.8463] w=0.1158 to align
# Constraint # added constraint: constraint((T0376)T78.CB, (T0376)H92.CB) [> 4.4128 = 7.3547 < 9.5611] w=0.1158 to align
# Constraint # added constraint: constraint((T0376)I212.CB, (T0376)S227.CB) [> 3.8620 = 6.4366 < 8.3676] w=0.1157 to align
# Constraint # added constraint: constraint((T0376)L260.CB, (T0376)T283.CB) [> 4.2140 = 7.0234 < 9.1304] w=0.1149 to align
# Constraint # added constraint: constraint((T0376)A80.CB, (T0376)P105.CB) [> 3.8304 = 6.3840 < 8.2992] w=0.1146 to align
# Constraint # added constraint: constraint((T0376)T145.CB, (T0376)Y174.CB) [> 4.0034 = 6.6724 < 8.6741] w=0.1145 to align
# Constraint # added constraint: constraint((T0376)S138.CB, (T0376)L149.CB) [> 3.8221 = 6.3702 < 8.2812] w=0.1138 to align
# Constraint # added constraint: constraint((T0376)V103.CB, (T0376)L160.CB) [> 4.6648 = 7.7746 < 10.1070] w=0.1131 to align
# Constraint # added constraint: constraint((T0376)L54.CB, (T0376)F280.CB) [> 4.5309 = 7.5515 < 9.8169] w=0.1081 to align
# Constraint # added constraint: constraint((T0376)L54.CB, (T0376)L278.CB) [> 4.6285 = 7.7142 < 10.0284] w=0.1081 to align
# Constraint # added constraint: constraint((T0376)Q117.CB, (T0376)T145.CB) [> 3.5607 = 5.9345 < 7.7148] w=0.1081 to align
# Constraint # added constraint: constraint((T0376)E219.CB, (T0376)R240.CB) [> 3.2394 = 5.3990 < 7.0187] w=0.1081 to align
# Constraint # added constraint: constraint((T0376)F254.CB, (T0376)F264.CB) [> 3.6077 = 6.0128 < 7.8166] w=0.1081 to align
# Constraint # added constraint: constraint((T0376)I104.CB, (T0376)Y141.CB) [> 4.5493 = 7.5822 < 9.8568] w=0.1081 to align
# Constraint # added constraint: constraint((T0376)D259.CB, (T0376)L270.CB) [> 3.2984 = 5.4973 < 7.1465] w=0.1081 to align
# Constraint # added constraint: constraint((T0376)V215.CB, (T0376)L262.CB) [> 3.7370 = 6.2283 < 8.0968] w=0.1081 to align
# Constraint # added constraint: constraint((T0376)I212.CB, (T0376)L248.CB) [> 3.3546 = 5.5910 < 7.2683] w=0.1081 to align
# Constraint # added constraint: constraint((T0376)V220.CB, (T0376)A247.CB) [> 4.2689 = 7.1149 < 9.2493] w=0.1081 to align
# Constraint # added constraint: constraint((T0376)G77.CA, (T0376)V134.CB) [> 4.6930 = 7.8217 < 10.1682] w=0.1081 to align
# Constraint # added constraint: constraint((T0376)T210.CB, (T0376)E219.CB) [> 3.9687 = 6.6145 < 8.5989] w=0.1079 to align
# Constraint # added constraint: constraint((T0376)P139.CB, (T0376)P169.CB) [> 3.4239 = 5.7066 < 7.4186] w=0.1077 to align
# Constraint # added constraint: constraint((T0376)C17.CB, (T0376)C46.CB) [> 3.5989 = 5.9982 < 7.7977] w=0.1077 to align
# Constraint # added constraint: constraint((T0376)V107.CB, (T0376)I135.CB) [> 3.4410 = 5.7350 < 7.4555] w=0.1076 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)G79.CA) [> 4.3524 = 7.2539 < 9.4301] w=0.1076 to align
# Constraint # added constraint: constraint((T0376)A80.CB, (T0376)S109.CB) [> 4.3176 = 7.1961 < 9.3549] w=0.1072 to align
# Constraint # added constraint: constraint((T0376)R110.CB, (T0376)Y141.CB) [> 3.6499 = 6.0832 < 7.9082] w=0.1072 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)A205.CB) [> 4.3561 = 7.2601 < 9.4381] w=0.1059 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)V201.CB) [> 3.3058 = 5.5096 < 7.1625] w=0.1058 to align
# Constraint # added constraint: constraint((T0376)M102.CB, (T0376)V161.CB) [> 4.3640 = 7.2733 < 9.4553] w=0.1037 to align
# Constraint # added constraint: constraint((T0376)A249.CB, (T0376)V261.CB) [> 4.0545 = 6.7575 < 8.7848] w=0.1035 to align
# Constraint # added constraint: constraint((T0376)V250.CB, (T0376)Y263.CB) [> 4.0899 = 6.8165 < 8.8615] w=0.1035 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)T210.CB) [> 4.2834 = 7.1390 < 9.2807] w=0.1035 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)A208.CB) [> 3.9064 = 6.5107 < 8.4639] w=0.1028 to align
# Constraint # added constraint: constraint((T0376)M49.CB, (T0376)T78.CB) [> 3.9166 = 6.5276 < 8.4859] w=0.1012 to align
# Constraint # added constraint: constraint((T0376)K31.CB, (T0376)L262.CB) [> 4.2735 = 7.1225 < 9.2592] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)H198.CB, (T0376)D236.CB) [> 3.9619 = 6.6032 < 8.5841] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)N214.CB, (T0376)L262.CB) [> 3.7325 = 6.2208 < 8.0871] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)V215.CB, (T0376)K265.CB) [> 3.9055 = 6.5091 < 8.4619] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)V269.CB) [> 3.8372 = 6.3953 < 8.3139] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)L262.CB) [> 3.9850 = 6.6417 < 8.6342] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)I212.CB, (T0376)F264.CB) [> 4.1628 = 6.9381 < 9.0195] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)E219.CB, (T0376)F301.CB) [> 4.3095 = 7.1825 < 9.3372] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)G211.CA, (T0376)V261.CB) [> 4.0639 = 6.7731 < 8.8050] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)G50.CA, (T0376)V261.CB) [> 4.2502 = 7.0838 < 9.2089] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)F264.CB, (T0376)R291.CB) [> 3.1914 = 5.3189 < 6.9146] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)L260.CB, (T0376)H279.CB) [> 3.0516 = 5.0859 < 6.6117] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)G257.CA, (T0376)H279.CB) [> 3.4745 = 5.7909 < 7.5281] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)S253.CB, (T0376)Y293.CB) [> 3.6257 = 6.0429 < 7.8558] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)L248.CB, (T0376)Q290.CB) [> 3.1092 = 5.1820 < 6.7365] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)E219.CB, (T0376)Q246.CB) [> 4.0245 = 6.7075 < 8.7198] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)E219.CB, (T0376)E243.CB) [> 4.0175 = 6.6958 < 8.7045] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)E219.CB, (T0376)A241.CB) [> 4.0195 = 6.6992 < 8.7089] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)L216.CB, (T0376)V250.CB) [> 3.8237 = 6.3728 < 8.2847] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)L216.CB, (T0376)L242.CB) [> 3.8084 = 6.3473 < 8.2515] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)T210.CB) [> 3.2161 = 5.3602 < 6.9682] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)S252.CB, (T0376)T283.CB) [> 2.9228 = 4.8713 < 6.3327] w=0.1004 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)V44.CB) [> 3.3395 = 5.5659 < 7.2356] w=0.1003 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)A42.CB) [> 3.3916 = 5.6526 < 7.3484] w=0.1003 to align
# Constraint # added constraint: constraint((T0376)G213.CA, (T0376)S227.CB) [> 3.1264 = 5.2106 < 6.7738] w=0.1003 to align
# Constraint # added constraint: constraint((T0376)T210.CB, (T0376)S227.CB) [> 3.5242 = 5.8737 < 7.6358] w=0.1000 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)V134.CB) [> 4.7251 = 7.8752 < 10.2377] w=0.0995 to align
# Constraint # added constraint: constraint((T0376)S109.CB, (T0376)Y141.CB) [> 3.0451 = 5.0751 < 6.5977] w=0.0994 to align
# Constraint # added constraint: constraint((T0376)I104.CB, (T0376)E165.CB) [> 4.4239 = 7.3731 < 9.5850] w=0.0993 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)K31.CB) [> 3.7675 = 6.2792 < 8.1629] w=0.0990 to align
# Constraint # added constraint: constraint((T0376)G8.CA, (T0376)T210.CB) [> 3.7802 = 6.3004 < 8.1905] w=0.0944 to align
# Constraint # added constraint: constraint((T0376)G8.CA, (T0376)I209.CB) [> 4.3139 = 7.1898 < 9.3468] w=0.0944 to align
# Constraint # added constraint: constraint((T0376)L108.CB, (T0376)Y140.CB) [> 3.5738 = 5.9563 < 7.7433] w=0.0932 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)I75.CB) [> 3.9440 = 6.5734 < 8.5454] w=0.0931 to align
# Constraint # added constraint: constraint((T0376)I190.CB, (T0376)G204.CA) [> 4.5687 = 7.6144 < 9.8988] w=0.0929 to align
# Constraint # added constraint: constraint((T0376)D51.CB, (T0376)Y276.CB) [> 4.2591 = 7.0985 < 9.2281] w=0.0927 to align
# Constraint # added constraint: constraint((T0376)M49.CB, (T0376)D255.CB) [> 3.5471 = 5.9118 < 7.6854] w=0.0927 to align
# Constraint # added constraint: constraint((T0376)K31.CB, (T0376)M267.CB) [> 3.5131 = 5.8551 < 7.6116] w=0.0927 to align
# Constraint # added constraint: constraint((T0376)V196.CB, (T0376)V220.CB) [> 3.5910 = 5.9851 < 7.7806] w=0.0927 to align
# Constraint # added constraint: constraint((T0376)M267.CB, (T0376)Q297.CB) [> 3.5697 = 5.9495 < 7.7344] w=0.0927 to align
# Constraint # added constraint: constraint((T0376)T78.CB, (T0376)A128.CB) [> 4.5720 = 7.6200 < 9.9059] w=0.0927 to align
# Constraint # added constraint: constraint((T0376)Q246.CB, (T0376)L300.CB) [> 3.8157 = 6.3596 < 8.2675] w=0.0927 to align
# Constraint # added constraint: constraint((T0376)L54.CB, (T0376)Y276.CB) [> 4.3541 = 7.2568 < 9.4338] w=0.0927 to align
# Constraint # added constraint: constraint((T0376)F264.CB, (T0376)T287.CB) [> 4.2821 = 7.1369 < 9.2779] w=0.0927 to align
# Constraint # added constraint: constraint((T0376)V250.CB, (T0376)Y293.CB) [> 3.5053 = 5.8422 < 7.5948] w=0.0927 to align
# Constraint # added constraint: constraint((T0376)V197.CB, (T0376)A239.CB) [> 4.0856 = 6.8093 < 8.8521] w=0.0926 to align
# Constraint # added constraint: constraint((T0376)V201.CB, (T0376)A235.CB) [> 4.5597 = 7.5995 < 9.8793] w=0.0925 to align
# Constraint # added constraint: constraint((T0376)V201.CB, (T0376)A239.CB) [> 4.3830 = 7.3050 < 9.4965] w=0.0925 to align
# Constraint # added constraint: constraint((T0376)V87.CB, (T0376)R110.CB) [> 2.8269 = 4.7115 < 6.1249] w=0.0922 to align
# Constraint # added constraint: constraint((T0376)V87.CB, (T0376)G111.CA) [> 4.1450 = 6.9083 < 8.9809] w=0.0922 to align
# Constraint # added constraint: constraint((T0376)R106.CB, (T0376)I135.CB) [> 2.1759 = 3.6265 < 4.7144] w=0.0922 to align
# Constraint # added constraint: constraint((T0376)A208.CB, (T0376)S227.CB) [> 4.0739 = 6.7899 < 8.8269] w=0.0918 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)M267.CB) [> 3.6516 = 6.0859 < 7.9117] w=0.0912 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)V161.CB) [> 3.7885 = 6.3141 < 8.2084] w=0.0891 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)I75.CB) [> 4.1407 = 6.9011 < 8.9715] w=0.0880 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)G207.CA) [> 4.0361 = 6.7269 < 8.7449] w=0.0875 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)T206.CB) [> 3.9737 = 6.6228 < 8.6096] w=0.0874 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)G191.CA) [> 3.7522 = 6.2537 < 8.1298] w=0.0873 to align
# Constraint # added constraint: constraint((T0376)G213.CA, (T0376)A229.CB) [> 2.9450 = 4.9083 < 6.3808] w=0.0865 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)S48.CB) [> 4.0064 = 6.6774 < 8.6806] w=0.0858 to align
# Constraint # added constraint: constraint((T0376)R106.CB, (T0376)Y140.CB) [> 3.3140 = 5.5234 < 7.1804] w=0.0855 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)L188.CB) [> 3.2115 = 5.3526 < 6.9584] w=0.0849 to align
# Constraint # added constraint: constraint((T0376)L55.CB, (T0376)D273.CB) [> 4.5886 = 7.6477 < 9.9420] w=0.0849 to align
# Constraint # added constraint: constraint((T0376)P105.CB, (T0376)R146.CB) [> 3.6583 = 6.0971 < 7.9262] w=0.0849 to align
# Constraint # added constraint: constraint((T0376)V215.CB, (T0376)A247.CB) [> 4.4213 = 7.3688 < 9.5794] w=0.0849 to align
# Constraint # added constraint: constraint((T0376)S253.CB, (T0376)Y276.CB) [> 4.1203 = 6.8671 < 8.9273] w=0.0849 to align
# Constraint # added constraint: constraint((T0376)S7.CB, (T0376)L188.CB) [> 3.8874 = 6.4791 < 8.4228] w=0.0849 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)W52.CB) [> 4.5092 = 7.5153 < 9.7700] w=0.0849 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)A208.CB) [> 3.3884 = 5.6474 < 7.3416] w=0.0848 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)G207.CA) [> 4.0906 = 6.8177 < 8.8630] w=0.0848 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)V44.CB) [> 4.3538 = 7.2564 < 9.4333] w=0.0848 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)T210.CB) [> 3.7220 = 6.2033 < 8.0643] w=0.0848 to align
# Constraint # added constraint: constraint((T0376)A147.CB, (T0376)M172.CB) [> 3.7615 = 6.2692 < 8.1500] w=0.0847 to align
# Constraint # added constraint: constraint((T0376)I114.CB, (T0376)T145.CB) [> 4.2558 = 7.0931 < 9.2210] w=0.0846 to align
# Constraint # added constraint: constraint((T0376)S138.CB, (T0376)P169.CB) [> 3.3338 = 5.5563 < 7.2231] w=0.0846 to align
# Constraint # added constraint: constraint((T0376)L160.CB, (T0376)E185.CB) [> 3.6933 = 6.1554 < 8.0021] w=0.0845 to align
# Constraint # added constraint: constraint((T0376)G162.CA, (T0376)E185.CB) [> 3.4185 = 5.6976 < 7.4068] w=0.0844 to align
# Constraint # added constraint: constraint((T0376)V76.CB, (T0376)G97.CA) [> 4.5973 = 7.6622 < 9.9609] w=0.0841 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)Y266.CB) [> 4.4927 = 7.4878 < 9.7341] w=0.0835 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)Y263.CB) [> 1.9772 = 3.2953 < 4.2839] w=0.0835 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)G211.CA) [> 3.6092 = 6.0153 < 7.8199] w=0.0832 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)G47.CA) [> 3.0789 = 5.1315 < 6.6710] w=0.0832 to align
# Constraint # added constraint: constraint((T0376)L67.CB, (T0376)G97.CA) [> 4.5094 = 7.5157 < 9.7704] w=0.0829 to align
# Constraint # added constraint: constraint((T0376)L160.CB, (T0376)L188.CB) [> 3.5716 = 5.9527 < 7.7385] w=0.0814 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)G191.CA) [> 3.8911 = 6.4852 < 8.4308] w=0.0806 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)V43.CB) [> 3.9695 = 6.6159 < 8.6006] w=0.0789 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)V43.CB) [> 4.1090 = 6.8483 < 8.9028] w=0.0778 to align
# Constraint # added constraint: constraint((T0376)I5.CB, (T0376)P73.CB) [> 3.8291 = 6.3818 < 8.2964] w=0.0772 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)M189.CB) [> 4.2999 = 7.1665 < 9.3164] w=0.0772 to align
# Constraint # added constraint: constraint((T0376)D20.CB, (T0376)T277.CB) [> 4.6372 = 7.7287 < 10.0473] w=0.0772 to align
# Constraint # added constraint: constraint((T0376)L251.CB, (T0376)M267.CB) [> 4.1979 = 6.9965 < 9.0954] w=0.0772 to align
# Constraint # added constraint: constraint((T0376)R106.CB, (T0376)G142.CA) [> 4.5496 = 7.5827 < 9.8575] w=0.0772 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)A42.CB) [> 3.9996 = 6.6660 < 8.6658] w=0.0771 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)I209.CB) [> 3.2753 = 5.4589 < 7.0965] w=0.0771 to align
# Constraint # added constraint: constraint((T0376)H198.CB, (T0376)A237.CB) [> 3.3128 = 5.5213 < 7.1777] w=0.0771 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)M49.CB) [> 4.1126 = 6.8544 < 8.9108] w=0.0768 to align
# Constraint # added constraint: constraint((T0376)I5.CB, (T0376)S41.CB) [> 4.1468 = 6.9114 < 8.9848] w=0.0767 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)K31.CB) [> 4.2648 = 7.1079 < 9.2403] w=0.0767 to align
# Constraint # added constraint: constraint((T0376)R106.CB, (T0376)Y141.CB) [> 3.3047 = 5.5078 < 7.1602] w=0.0766 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)C46.CB) [> 3.5442 = 5.9069 < 7.6790] w=0.0766 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)S227.CB) [> 2.8305 = 4.7176 < 6.1328] w=0.0766 to align
# Constraint # added constraint: constraint((T0376)V186.CB, (T0376)G207.CA) [> 4.4425 = 7.4042 < 9.6254] w=0.0763 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)F264.CB) [> 2.4969 = 4.1616 < 5.4100] w=0.0758 to align
# Constraint # added constraint: constraint((T0376)A195.CB, (T0376)Y263.CB) [> 3.9731 = 6.6218 < 8.6084] w=0.0758 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)L262.CB) [> 4.4596 = 7.4326 < 9.6624] w=0.0758 to align
# Constraint # added constraint: constraint((T0376)P139.CB, (T0376)L149.CB) [> 3.4705 = 5.7842 < 7.5194] w=0.0752 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)V74.CB) [> 4.0286 = 6.7144 < 8.7287] w=0.0726 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)M189.CB) [> 4.0329 = 6.7216 < 8.7380] w=0.0721 to align
# Constraint # added constraint: constraint((T0376)G213.CA, (T0376)A237.CB) [> 3.8078 = 6.3464 < 8.2503] w=0.0718 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)C46.CB) [> 4.2141 = 7.0235 < 9.1306] w=0.0717 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)S227.CB) [> 3.7127 = 6.1878 < 8.0442] w=0.0713 to align
# Constraint # added constraint: constraint((T0376)N202.CB, (T0376)A235.CB) [> 3.8703 = 6.4504 < 8.3856] w=0.0695 to align
# Constraint # added constraint: constraint((T0376)L260.CB, (T0376)L270.CB) [> 2.7561 = 4.5935 < 5.9716] w=0.0695 to align
# Constraint # added constraint: constraint((T0376)V76.CB, (T0376)H92.CB) [> 4.7307 = 7.8844 < 10.2498] w=0.0695 to align
# Constraint # added constraint: constraint((T0376)G199.CA, (T0376)S227.CB) [> 4.2097 = 7.0162 < 9.1210] w=0.0695 to align
# Constraint # added constraint: constraint((T0376)M49.CB, (T0376)F254.CB) [> 3.8847 = 6.4745 < 8.4168] w=0.0695 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)G39.CA) [> 4.4532 = 7.4220 < 9.6487] w=0.0695 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)M189.CB) [> 4.3937 = 7.3228 < 9.5196] w=0.0694 to align
# Constraint # added constraint: constraint((T0376)K31.CB, (T0376)Y45.CB) [> 4.2839 = 7.1399 < 9.2818] w=0.0694 to align
# Constraint # added constraint: constraint((T0376)I104.CB, (T0376)V134.CB) [> 3.8965 = 6.4941 < 8.4424] w=0.0694 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)S48.CB) [> 3.0794 = 5.1323 < 6.6720] w=0.0691 to align
# Constraint # added constraint: constraint((T0376)R106.CB, (T0376)G162.CA) [> 4.5966 = 7.6610 < 9.9592] w=0.0690 to align
# Constraint # added constraint: constraint((T0376)D171.CB, (T0376)C203.CB) [> 4.6315 = 7.7191 < 10.0348] w=0.0690 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)I75.CB) [> 4.1147 = 6.8578 < 8.9151] w=0.0689 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)M189.CB) [> 4.2336 = 7.0560 < 9.1727] w=0.0687 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)S227.CB) [> 3.4002 = 5.6671 < 7.3672] w=0.0686 to align
# Constraint # added constraint: constraint((T0376)K31.CB, (T0376)V215.CB) [> 3.7789 = 6.2983 < 8.1877] w=0.0684 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)M189.CB) [> 3.2920 = 5.4868 < 7.1328] w=0.0683 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)L260.CB) [> 3.7294 = 6.2157 < 8.0804] w=0.0681 to align
# Constraint # added constraint: constraint((T0376)G39.CA, (T0376)V261.CB) [> 4.5194 = 7.5324 < 9.7921] w=0.0681 to align
# Constraint # added constraint: constraint((T0376)M49.CB, (T0376)G77.CA) [> 3.9661 = 6.6102 < 8.5932] w=0.0678 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)G77.CA) [> 3.7268 = 6.2113 < 8.0747] w=0.0644 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)I75.CB) [> 4.5461 = 7.5768 < 9.8498] w=0.0634 to align
# Constraint # added constraint: constraint((T0376)Y263.CB, (T0376)Y293.CB) [> 4.6193 = 7.6989 < 10.0085] w=0.0618 to align
# Constraint # added constraint: constraint((T0376)K31.CB, (T0376)E275.CB) [> 3.7247 = 6.2079 < 8.0702] w=0.0618 to align
# Constraint # added constraint: constraint((T0376)D24.CB, (T0376)Y276.CB) [> 3.2489 = 5.4148 < 7.0392] w=0.0618 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)Y276.CB) [> 2.5867 = 4.3112 < 5.6045] w=0.0618 to align
# Constraint # added constraint: constraint((T0376)L262.CB, (T0376)Y276.CB) [> 3.9524 = 6.5873 < 8.5634] w=0.0618 to align
# Constraint # added constraint: constraint((T0376)L262.CB, (T0376)T277.CB) [> 4.5215 = 7.5358 < 9.7965] w=0.0618 to align
# Constraint # added constraint: constraint((T0376)M268.CB, (T0376)F298.CB) [> 4.7084 = 7.8473 < 10.2015] w=0.0618 to align
# Constraint # added constraint: constraint((T0376)M49.CB, (T0376)F264.CB) [> 4.0007 = 6.6678 < 8.6682] w=0.0618 to align
# Constraint # added constraint: constraint((T0376)S109.CB, (T0376)L149.CB) [> 4.0148 = 6.6913 < 8.6987] w=0.0617 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)A208.CB) [> 4.0559 = 6.7598 < 8.7877] w=0.0617 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)G207.CA) [> 3.9820 = 6.6366 < 8.6276] w=0.0617 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)V43.CB) [> 4.5207 = 7.5346 < 9.7949] w=0.0617 to align
# Constraint # added constraint: constraint((T0376)P73.CB, (T0376)P132.CB) [> 4.5128 = 7.5213 < 9.7777] w=0.0616 to align
# Constraint # added constraint: constraint((T0376)I104.CB, (T0376)A133.CB) [> 4.4651 = 7.4419 < 9.6744] w=0.0616 to align
# Constraint # added constraint: constraint((T0376)V87.CB, (T0376)S112.CB) [> 2.3264 = 3.8773 < 5.0405] w=0.0614 to align
# Constraint # added constraint: constraint((T0376)L54.CB, (T0376)G79.CA) [> 3.6719 = 6.1198 < 7.9557] w=0.0614 to align
# Constraint # added constraint: constraint((T0376)I212.CB, (T0376)L223.CB) [> 3.4458 = 5.7431 < 7.4660] w=0.0612 to align
# Constraint # added constraint: constraint((T0376)A133.CB, (T0376)L188.CB) [> 4.0858 = 6.8097 < 8.8526] w=0.0611 to align
# Constraint # added constraint: constraint((T0376)S138.CB, (T0376)I190.CB) [> 4.0650 = 6.7750 < 8.8075] w=0.0608 to align
# Constraint # added constraint: constraint((T0376)A133.CB, (T0376)V186.CB) [> 3.7720 = 6.2866 < 8.1726] w=0.0606 to align
# Constraint # added constraint: constraint((T0376)S7.CB, (T0376)G71.CA) [> 3.7995 = 6.3325 < 8.2323] w=0.0603 to align
# Constraint # added constraint: constraint((T0376)M49.CB, (T0376)V76.CB) [> 4.3426 = 7.2376 < 9.4089] w=0.0601 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)T210.CB) [> 4.4756 = 7.4594 < 9.6972] w=0.0601 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)G211.CA) [> 3.1142 = 5.1904 < 6.7475] w=0.0601 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)I212.CB) [> 3.3340 = 5.5567 < 7.2236] w=0.0601 to align
# Constraint # added constraint: constraint((T0376)A86.CB, (T0376)L101.CB) [> 3.7368 = 6.2280 < 8.0964] w=0.0599 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)S227.CB) [> 4.3728 = 7.2881 < 9.4745] w=0.0595 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)V201.CB) [> 3.8302 = 6.3837 < 8.2988] w=0.0567 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)G47.CA) [> 3.8849 = 6.4748 < 8.4172] w=0.0567 to align
# Constraint # added constraint: constraint((T0376)W52.CB, (T0376)I104.CB) [> 4.5773 = 7.6287 < 9.9174] w=0.0549 to align
# Constraint # added constraint: constraint((T0376)L251.CB, (T0376)Y263.CB) [> 2.5986 = 4.3310 < 5.6303] w=0.0541 to align
# Constraint # added constraint: constraint((T0376)S4.CB, (T0376)K99.CB) [> 3.1096 = 5.1827 < 6.7375] w=0.0541 to align
# Constraint # added constraint: constraint((T0376)S4.CB, (T0376)P73.CB) [> 3.4481 = 5.7468 < 7.4708] w=0.0541 to align
# Constraint # added constraint: constraint((T0376)G191.CA, (T0376)V201.CB) [> 4.7056 = 7.8426 < 10.1954] w=0.0541 to align
# Constraint # added constraint: constraint((T0376)K99.CB, (T0376)E130.CB) [> 4.5072 = 7.5119 < 9.7655] w=0.0540 to align
# Constraint # added constraint: constraint((T0376)A170.CB, (T0376)N202.CB) [> 3.9486 = 6.5811 < 8.5554] w=0.0536 to align
# Constraint # added constraint: constraint((T0376)E185.CB, (T0376)T206.CB) [> 2.8430 = 4.7384 < 6.1599] w=0.0534 to align
# Constraint # added constraint: constraint((T0376)G162.CA, (T0376)I209.CB) [> 4.0655 = 6.7759 < 8.8086] w=0.0533 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)I209.CB) [> 4.1692 = 6.9486 < 9.0332] w=0.0527 to align
# Constraint # added constraint: constraint((T0376)S112.CB, (T0376)S138.CB) [> 3.7048 = 6.1747 < 8.0271] w=0.0502 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)A239.CB) [> 3.6612 = 6.1020 < 7.9326] w=0.0496 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)P73.CB) [> 4.3770 = 7.2950 < 9.4835] w=0.0490 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)I75.CB) [> 4.5689 = 7.6148 < 9.8992] w=0.0489 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)V215.CB) [> 3.9783 = 6.6304 < 8.6195] w=0.0488 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)S227.CB) [> 4.2007 = 7.0012 < 9.1016] w=0.0488 to align
# Constraint # added constraint: constraint((T0376)Y266.CB, (T0376)E295.CB) [> 4.6196 = 7.6994 < 10.0092] w=0.0463 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)R146.CB) [> 3.9111 = 6.5185 < 8.4741] w=0.0463 to align
# Constraint # added constraint: constraint((T0376)S48.CB, (T0376)V261.CB) [> 4.6273 = 7.7121 < 10.0258] w=0.0463 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)L262.CB) [> 4.4282 = 7.3804 < 9.5945] w=0.0463 to align
# Constraint # added constraint: constraint((T0376)R106.CB, (T0376)E165.CB) [> 4.7341 = 7.8903 < 10.2573] w=0.0463 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)I36.CB) [> 4.4896 = 7.4827 < 9.7275] w=0.0463 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)P73.CB) [> 4.5966 = 7.6611 < 9.9594] w=0.0463 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)P23.CB) [> 3.8220 = 6.3700 < 8.2810] w=0.0463 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)L223.CB) [> 4.0863 = 6.8106 < 8.8537] w=0.0463 to align
# Constraint # added constraint: constraint((T0376)Y140.CB, (T0376)V192.CB) [> 3.7494 = 6.2491 < 8.1238] w=0.0463 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)L188.CB) [> 3.9914 = 6.6524 < 8.6481] w=0.0463 to align
# Constraint # added constraint: constraint((T0376)I75.CB, (T0376)V103.CB) [> 3.7023 = 6.1705 < 8.0216] w=0.0463 to align
# Constraint # added constraint: constraint((T0376)A42.CB, (T0376)G207.CA) [> 4.4867 = 7.4778 < 9.7212] w=0.0462 to align
# Constraint # added constraint: constraint((T0376)G191.CA, (T0376)I212.CB) [> 4.5117 = 7.5194 < 9.7753] w=0.0459 to align
# Constraint # added constraint: constraint((T0376)A90.CB, (T0376)M102.CB) [> 4.2429 = 7.0715 < 9.1930] w=0.0459 to align
# Constraint # added constraint: constraint((T0376)L101.CB, (T0376)I135.CB) [> 3.8313 = 6.3855 < 8.3011] w=0.0459 to align
# Constraint # added constraint: constraint((T0376)G97.CA, (T0376)A127.CB) [> 4.4747 = 7.4578 < 9.6952] w=0.0458 to align
# Constraint # added constraint: constraint((T0376)K31.CB, (T0376)L216.CB) [> 3.5621 = 5.9369 < 7.7179] w=0.0458 to align
# Constraint # added constraint: constraint((T0376)T83.CB, (T0376)L101.CB) [> 3.3918 = 5.6530 < 7.3489] w=0.0458 to align
# Constraint # added constraint: constraint((T0376)A84.CB, (T0376)K95.CB) [> 4.0398 = 6.7329 < 8.7528] w=0.0458 to align
# Constraint # added constraint: constraint((T0376)N214.CB, (T0376)L223.CB) [> 4.2642 = 7.1069 < 9.2390] w=0.0458 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)I190.CB) [> 3.7819 = 6.3032 < 8.1942] w=0.0457 to align
# Constraint # added constraint: constraint((T0376)R146.CB, (T0376)E165.CB) [> 3.9882 = 6.6469 < 8.6410] w=0.0457 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)P73.CB) [> 4.2435 = 7.0725 < 9.1942] w=0.0456 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)G77.CA) [> 3.2669 = 5.4448 < 7.0782] w=0.0420 to align
# Constraint # added constraint: constraint((T0376)Y45.CB, (T0376)I209.CB) [> 4.1800 = 6.9666 < 9.0566] w=0.0418 to align
# Constraint # added constraint: constraint((T0376)Y45.CB, (T0376)M102.CB) [> 3.5214 = 5.8690 < 7.6297] w=0.0418 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)S227.CB) [> 3.2117 = 5.3529 < 6.9588] w=0.0413 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)I104.CB) [> 4.3541 = 7.2569 < 9.4340] w=0.0412 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)M102.CB) [> 3.9553 = 6.5921 < 8.5698] w=0.0412 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)V261.CB) [> 4.2330 = 7.0550 < 9.1715] w=0.0412 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)G211.CA) [> 3.8955 = 6.4925 < 8.4402] w=0.0407 to align
# Constraint # added constraint: constraint((T0376)D171.CB, (T0376)I190.CB) [> 3.9908 = 6.6514 < 8.6468] w=0.0395 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)I209.CB) [> 3.8853 = 6.4754 < 8.4181] w=0.0393 to align
# Constraint # added constraint: constraint((T0376)D184.CB, (T0376)G204.CA) [> 4.1740 = 6.9567 < 9.0437] w=0.0389 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)I190.CB) [> 4.2918 = 7.1530 < 9.2989] w=0.0386 to align
# Constraint # added constraint: constraint((T0376)I212.CB, (T0376)V261.CB) [> 4.7500 = 7.9167 < 10.2917] w=0.0386 to align
# Constraint # added constraint: constraint((T0376)G77.CA, (T0376)P105.CB) [> 4.0438 = 6.7397 < 8.7616] w=0.0386 to align
# Constraint # added constraint: constraint((T0376)G77.CA, (T0376)A90.CB) [> 4.3282 = 7.2137 < 9.3777] w=0.0386 to align
# Constraint # added constraint: constraint((T0376)Y45.CB, (T0376)T56.CB) [> 3.7178 = 6.1964 < 8.0553] w=0.0385 to align
# Constraint # added constraint: constraint((T0376)T56.CB, (T0376)G77.CA) [> 4.2161 = 7.0269 < 9.1349] w=0.0385 to align
# Constraint # added constraint: constraint((T0376)L55.CB, (T0376)G79.CA) [> 4.2480 = 7.0800 < 9.2040] w=0.0385 to align
# Constraint # added constraint: constraint((T0376)A90.CB, (T0376)I104.CB) [> 4.2417 = 7.0695 < 9.1903] w=0.0385 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)E219.CB) [> 3.2027 = 5.3378 < 6.9392] w=0.0384 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)L188.CB) [> 3.6936 = 6.1560 < 8.0028] w=0.0384 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)G213.CA) [> 3.8160 = 6.3600 < 8.2680] w=0.0384 to align
# Constraint # added constraint: constraint((T0376)A133.CB, (T0376)T206.CB) [> 4.0679 = 6.7799 < 8.8138] w=0.0383 to align
# Constraint # added constraint: constraint((T0376)T56.CB, (T0376)G79.CA) [> 4.4073 = 7.3456 < 9.5492] w=0.0383 to align
# Constraint # added constraint: constraint((T0376)I5.CB, (T0376)A42.CB) [> 3.6884 = 6.1473 < 7.9915] w=0.0383 to align
# Constraint # added constraint: constraint((T0376)M49.CB, (T0376)I104.CB) [> 4.6651 = 7.7751 < 10.1076] w=0.0383 to align
# Constraint # added constraint: constraint((T0376)K31.CB, (T0376)S227.CB) [> 4.3337 = 7.2229 < 9.3897] w=0.0382 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)G191.CA) [> 3.3683 = 5.6139 < 7.2980] w=0.0380 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)L188.CB) [> 4.5132 = 7.5219 < 9.7785] w=0.0380 to align
# Constraint # added constraint: constraint((T0376)M102.CB, (T0376)G162.CA) [> 4.5818 = 7.6363 < 9.9272] w=0.0380 to align
# Constraint # added constraint: constraint((T0376)G213.CA, (T0376)D236.CB) [> 2.9657 = 4.9428 < 6.4256] w=0.0378 to align
# Constraint # added constraint: constraint((T0376)V134.CB, (T0376)I209.CB) [> 3.7839 = 6.3065 < 8.1985] w=0.0378 to align
# Constraint # added constraint: constraint((T0376)P53.CB, (T0376)N82.CB) [> 3.7666 = 6.2777 < 8.1610] w=0.0375 to align
# Constraint # added constraint: constraint((T0376)Y45.CB, (T0376)T78.CB) [> 4.5596 = 7.5993 < 9.8791] w=0.0369 to align
# Constraint # added constraint: constraint((T0376)P53.CB, (T0376)L108.CB) [> 3.5186 = 5.8644 < 7.6237] w=0.0369 to align
# Constraint # added constraint: constraint((T0376)W52.CB, (T0376)G111.CA) [> 4.2880 = 7.1467 < 9.2907] w=0.0364 to align
# Constraint # added constraint: constraint((T0376)V161.CB, (T0376)I190.CB) [> 4.2933 = 7.1555 < 9.3022] w=0.0353 to align
# Constraint # added constraint: constraint((T0376)N281.CB, (T0376)F298.CB) [> 3.5357 = 5.8928 < 7.6606] w=0.0340 to align
# Constraint # added constraint: constraint((T0376)A239.CB, (T0376)V261.CB) [> 3.7165 = 6.1942 < 8.0525] w=0.0340 to align
# Constraint # added constraint: constraint((T0376)F280.CB, (T0376)R291.CB) [> 4.6035 = 7.6725 < 9.9743] w=0.0333 to align
# Constraint # added constraint: constraint((T0376)F280.CB, (T0376)V294.CB) [> 3.3684 = 5.6141 < 7.2983] w=0.0333 to align
# Constraint # added constraint: constraint((T0376)P53.CB, (T0376)I212.CB) [> 4.5497 = 7.5828 < 9.8577] w=0.0322 to align
# Constraint # added constraint: constraint((T0376)W52.CB, (T0376)R106.CB) [> 3.6828 = 6.1381 < 7.9795] w=0.0320 to align
# Constraint # added constraint: constraint((T0376)D171.CB, (T0376)G191.CA) [> 3.3367 = 5.5612 < 7.2295] w=0.0318 to align
# Constraint # added constraint: constraint((T0376)M1.CB, (T0376)K99.CB) [> 3.8363 = 6.3939 < 8.3120] w=0.0309 to align
# Constraint # added constraint: constraint((T0376)Y263.CB, (T0376)Q297.CB) [> 4.2285 = 7.0475 < 9.1618] w=0.0309 to align
# Constraint # added constraint: constraint((T0376)S7.CB, (T0376)V201.CB) [> 4.2934 = 7.1556 < 9.3023] w=0.0309 to align
# Constraint # added constraint: constraint((T0376)N202.CB, (T0376)L278.CB) [> 4.0985 = 6.8309 < 8.8802] w=0.0309 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)I190.CB) [> 3.7980 = 6.3301 < 8.2291] w=0.0309 to align
# Constraint # added constraint: constraint((T0376)T78.CB, (T0376)P105.CB) [> 3.7889 = 6.3148 < 8.2093] w=0.0308 to align
# Constraint # added constraint: constraint((T0376)V103.CB, (T0376)N137.CB) [> 3.2157 = 5.3595 < 6.9673] w=0.0308 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)I190.CB) [> 3.8887 = 6.4812 < 8.4256] w=0.0308 to align
# Constraint # added constraint: constraint((T0376)V76.CB, (T0376)V103.CB) [> 3.6786 = 6.1311 < 7.9704] w=0.0308 to align
# Constraint # added constraint: constraint((T0376)M189.CB, (T0376)V201.CB) [> 4.5664 = 7.6106 < 9.8938] w=0.0308 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)I190.CB) [> 3.7303 = 6.2172 < 8.0824] w=0.0308 to align
# Constraint # added constraint: constraint((T0376)V74.CB, (T0376)L101.CB) [> 3.6334 = 6.0557 < 7.8725] w=0.0308 to align
# Constraint # added constraint: constraint((T0376)N82.CB, (T0376)P105.CB) [> 4.0401 = 6.7335 < 8.7535] w=0.0308 to align
# Constraint # added constraint: constraint((T0376)R106.CB, (T0376)L149.CB) [> 3.1069 = 5.1782 < 6.7316] w=0.0307 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)S227.CB) [> 4.1995 = 6.9991 < 9.0989] w=0.0307 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)L108.CB) [> 4.3092 = 7.1819 < 9.3365] w=0.0307 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)G79.CA) [> 4.1417 = 6.9029 < 8.9737] w=0.0307 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)L188.CB) [> 4.1533 = 6.9222 < 8.9989] w=0.0307 to align
# Constraint # added constraint: constraint((T0376)I190.CB, (T0376)G211.CA) [> 4.3661 = 7.2768 < 9.4598] w=0.0306 to align
# Constraint # added constraint: constraint((T0376)A37.CB, (T0376)P217.CB) [> 3.5426 = 5.9042 < 7.6755] w=0.0305 to align
# Constraint # added constraint: constraint((T0376)A176.CB, (T0376)N202.CB) [> 4.6157 = 7.6928 < 10.0006] w=0.0305 to align
# Constraint # added constraint: constraint((T0376)K31.CB, (T0376)L223.CB) [> 4.2396 = 7.0659 < 9.1857] w=0.0305 to align
# Constraint # added constraint: constraint((T0376)V76.CB, (T0376)K99.CB) [> 4.0310 = 6.7183 < 8.7338] w=0.0305 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)P73.CB) [> 4.4408 = 7.4013 < 9.6217] w=0.0304 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)E165.CB) [> 4.6789 = 7.7982 < 10.1376] w=0.0303 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)M189.CB) [> 4.5681 = 7.6135 < 9.8976] w=0.0303 to align
# Constraint # added constraint: constraint((T0376)A133.CB, (T0376)M189.CB) [> 4.0210 = 6.7017 < 8.7123] w=0.0303 to align
# Constraint # added constraint: constraint((T0376)P105.CB, (T0376)L149.CB) [> 3.8351 = 6.3919 < 8.3095] w=0.0299 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)I135.CB) [> 4.6321 = 7.7202 < 10.0363] w=0.0298 to align
# Constraint # added constraint: constraint((T0376)I75.CB, (T0376)I135.CB) [> 4.7372 = 7.8953 < 10.2638] w=0.0298 to align
# Constraint # added constraint: constraint((T0376)F150.CB, (T0376)G204.CA) [> 3.5001 = 5.8334 < 7.5834] w=0.0298 to align
# Constraint # added constraint: constraint((T0376)P53.CB, (T0376)G79.CA) [> 4.0682 = 6.7804 < 8.8145] w=0.0298 to align
# Constraint # added constraint: constraint((T0376)N281.CB, (T0376)F301.CB) [> 4.1928 = 6.9880 < 9.0845] w=0.0282 to align
# Constraint # added constraint: constraint((T0376)V161.CB, (T0376)I209.CB) [> 3.9840 = 6.6400 < 8.6320] w=0.0276 to align
# Constraint # added constraint: constraint((T0376)V161.CB, (T0376)G191.CA) [> 4.1388 = 6.8979 < 8.9673] w=0.0276 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)V261.CB) [> 4.2378 = 7.0630 < 9.1819] w=0.0268 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)M102.CB) [> 3.9197 = 6.5329 < 8.4927] w=0.0268 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)I104.CB) [> 4.2429 = 7.0715 < 9.1929] w=0.0268 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)T210.CB) [> 4.7421 = 7.9035 < 10.2746] w=0.0268 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)S227.CB) [> 4.7536 = 7.9226 < 10.2994] w=0.0261 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)Y45.CB) [> 3.3966 = 5.6610 < 7.3593] w=0.0260 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)Y45.CB) [> 4.2261 = 7.0435 < 9.1565] w=0.0254 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)N214.CB) [> 4.6784 = 7.7973 < 10.1365] w=0.0239 to align
# Constraint # added constraint: constraint((T0376)I5.CB, (T0376)I75.CB) [> 3.8677 = 6.4462 < 8.3800] w=0.0232 to align
# Constraint # added constraint: constraint((T0376)S4.CB, (T0376)G100.CA) [> 4.2450 = 7.0751 < 9.1976] w=0.0232 to align
# Constraint # added constraint: constraint((T0376)M1.CB, (T0376)S41.CB) [> 3.9861 = 6.6434 < 8.6365] w=0.0232 to align
# Constraint # added constraint: constraint((T0376)P53.CB, (T0376)V107.CB) [> 3.9030 = 6.5050 < 8.4565] w=0.0232 to align
# Constraint # added constraint: constraint((T0376)V43.CB, (T0376)G71.CA) [> 4.6365 = 7.7274 < 10.0457] w=0.0232 to align
# Constraint # added constraint: constraint((T0376)I36.CB, (T0376)P73.CB) [> 4.0740 = 6.7900 < 8.8270] w=0.0232 to align
# Constraint # added constraint: constraint((T0376)I5.CB, (T0376)G162.CA) [> 4.7654 = 7.9424 < 10.3251] w=0.0232 to align
# Constraint # added constraint: constraint((T0376)I5.CB, (T0376)V161.CB) [> 3.7896 = 6.3160 < 8.2108] w=0.0232 to align
# Constraint # added constraint: constraint((T0376)I5.CB, (T0376)V134.CB) [> 4.3324 = 7.2206 < 9.3868] w=0.0232 to align
# Constraint # added constraint: constraint((T0376)N202.CB, (T0376)A230.CB) [> 4.2543 = 7.0906 < 9.2177] w=0.0232 to align
# Constraint # added constraint: constraint((T0376)R106.CB, (T0376)V134.CB) [> 4.2762 = 7.1270 < 9.2651] w=0.0232 to align
# Constraint # added constraint: constraint((T0376)A42.CB, (T0376)I209.CB) [> 4.7356 = 7.8926 < 10.2604] w=0.0232 to align
# Constraint # added constraint: constraint((T0376)K31.CB, (T0376)A42.CB) [> 3.5470 = 5.9117 < 7.6852] w=0.0232 to align
# Constraint # added constraint: constraint((T0376)N82.CB, (T0376)V103.CB) [> 4.1255 = 6.8759 < 8.9386] w=0.0232 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)M102.CB) [> 4.7569 = 7.9281 < 10.3065] w=0.0232 to align
# Constraint # added constraint: constraint((T0376)V103.CB, (T0376)M189.CB) [> 4.4261 = 7.3769 < 9.5899] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)T206.CB) [> 4.0890 = 6.8150 < 8.8595] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)I75.CB) [> 4.2013 = 7.0021 < 9.1027] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)I36.CB) [> 4.6960 = 7.8266 < 10.1746] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)W52.CB, (T0376)V76.CB) [> 3.8743 = 6.4571 < 8.3943] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)A247.CB, (T0376)K265.CB) [> 3.9196 = 6.5327 < 8.4925] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)M102.CB, (T0376)I190.CB) [> 4.6136 = 7.6893 < 9.9961] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)I135.CB) [> 4.7901 = 7.9835 < 10.3785] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)V161.CB) [> 3.6119 = 6.0198 < 7.8258] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)A133.CB) [> 4.6835 = 7.8058 < 10.1475] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)A3.CB, (T0376)C203.CB) [> 4.5286 = 7.5476 < 9.8119] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)S138.CB, (T0376)G162.CA) [> 4.2106 = 7.0176 < 9.1229] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)L101.CB, (T0376)V161.CB) [> 4.3217 = 7.2029 < 9.3638] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)A42.CB, (T0376)L101.CB) [> 4.5957 = 7.6596 < 9.9574] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)I190.CB) [> 4.2409 = 7.0682 < 9.1886] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)V161.CB) [> 3.5982 = 5.9970 < 7.7961] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)V201.CB, (T0376)A230.CB) [> 4.0696 = 6.7826 < 8.8174] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)N82.CB, (T0376)I104.CB) [> 4.1449 = 6.9082 < 8.9807] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)K99.CB, (T0376)P129.CB) [> 4.5430 = 7.5717 < 9.8432] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)A195.CB, (T0376)S227.CB) [> 4.6657 = 7.7762 < 10.1091] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)K31.CB, (T0376)I212.CB) [> 4.5915 = 7.6525 < 9.9483] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)G191.CA) [> 4.3909 = 7.3181 < 9.5135] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)I36.CB, (T0376)V74.CB) [> 4.4153 = 7.3589 < 9.5665] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)G213.CA) [> 3.1339 = 5.2232 < 6.7901] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)A42.CB, (T0376)T206.CB) [> 4.7256 = 7.8760 < 10.2387] w=0.0231 to align
# Constraint # added constraint: constraint((T0376)G211.CA, (T0376)L223.CB) [> 3.5183 = 5.8638 < 7.6230] w=0.0230 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)I212.CB) [> 2.5770 = 4.2951 < 5.5836] w=0.0230 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)I212.CB) [> 3.7798 = 6.2997 < 8.1896] w=0.0229 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)A208.CB) [> 3.2287 = 5.3811 < 6.9954] w=0.0229 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)G207.CA) [> 3.8176 = 6.3626 < 8.2714] w=0.0229 to align
# Constraint # added constraint: constraint((T0376)V134.CB, (T0376)G207.CA) [> 3.0405 = 5.0674 < 6.5877] w=0.0229 to align
# Constraint # added constraint: constraint((T0376)V134.CB, (T0376)T206.CB) [> 4.1056 = 6.8426 < 8.8954] w=0.0229 to align
# Constraint # added constraint: constraint((T0376)A133.CB, (T0376)G207.CA) [> 4.5249 = 7.5415 < 9.8040] w=0.0229 to align
# Constraint # added constraint: constraint((T0376)M102.CB, (T0376)L188.CB) [> 4.5644 = 7.6073 < 9.8895] w=0.0229 to align
# Constraint # added constraint: constraint((T0376)G191.CA, (T0376)G213.CA) [> 4.0765 = 6.7942 < 8.8325] w=0.0228 to align
# Constraint # added constraint: constraint((T0376)K99.CB, (T0376)A133.CB) [> 4.3983 = 7.3305 < 9.5296] w=0.0228 to align
# Constraint # added constraint: constraint((T0376)K99.CB, (T0376)V134.CB) [> 4.1804 = 6.9673 < 9.0575] w=0.0228 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)K31.CB) [> 3.9312 = 6.5521 < 8.5177] w=0.0227 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)M189.CB) [> 2.7155 = 4.5258 < 5.8835] w=0.0226 to align
# Constraint # added constraint: constraint((T0376)S138.CB, (T0376)M189.CB) [> 4.4976 = 7.4959 < 9.7447] w=0.0226 to align
# Constraint # added constraint: constraint((T0376)P53.CB, (T0376)S109.CB) [> 3.3608 = 5.6013 < 7.2817] w=0.0222 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)G211.CA) [> 3.7904 = 6.3173 < 8.2125] w=0.0184 to align
# Constraint # added constraint: constraint((T0376)V43.CB, (T0376)G207.CA) [> 4.6990 = 7.8316 < 10.1811] w=0.0167 to align
# Constraint # added constraint: constraint((T0376)A3.CB, (T0376)P73.CB) [> 3.8784 = 6.4640 < 8.4032] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)A3.CB, (T0376)S41.CB) [> 4.5070 = 7.5117 < 9.7652] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)M1.CB, (T0376)P132.CB) [> 4.3414 = 7.2357 < 9.4065] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)E219.CB, (T0376)Y305.CB) [> 4.0007 = 6.6678 < 8.6682] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)L216.CB, (T0376)W304.CB) [> 4.7975 = 7.9959 < 10.3947] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)E219.CB, (T0376)W304.CB) [> 4.7909 = 7.9848 < 10.3803] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)V43.CB, (T0376)I209.CB) [> 3.8285 = 6.3808 < 8.2950] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)V43.CB, (T0376)M102.CB) [> 3.5823 = 5.9706 < 7.7617] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)V43.CB, (T0376)G77.CA) [> 4.2362 = 7.0604 < 9.1785] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)K271.CB, (T0376)F280.CB) [> 3.1193 = 5.1988 < 6.7585] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)T206.CB, (T0376)L278.CB) [> 4.7497 = 7.9161 < 10.2910] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)V201.CB, (T0376)L278.CB) [> 3.5640 = 5.9401 < 7.7221] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)P53.CB) [> 4.5392 = 7.5653 < 9.8349] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)G47.CA, (T0376)P105.CB) [> 4.5541 = 7.5902 < 9.8673] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)P105.CB) [> 4.4133 = 7.3556 < 9.5622] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)V201.CB) [> 4.6788 = 7.7980 < 10.1374] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)V134.CB, (T0376)A208.CB) [> 4.1949 = 6.9914 < 9.0889] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)T194.CB, (T0376)A230.CB) [> 4.4445 = 7.4075 < 9.6297] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)G213.CA, (T0376)L223.CB) [> 2.6531 = 4.4218 < 5.7484] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)G50.CA, (T0376)N82.CB) [> 3.3761 = 5.6269 < 7.3150] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)M189.CB, (T0376)T210.CB) [> 4.6998 = 7.8330 < 10.1830] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)V201.CB, (T0376)V261.CB) [> 3.6140 = 6.0234 < 7.8305] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)T206.CB, (T0376)V261.CB) [> 4.0793 = 6.7988 < 8.8384] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)P53.CB, (T0376)R106.CB) [> 4.5090 = 7.5150 < 9.7695] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)L125.CB, (T0376)D183.CB) [> 4.2260 = 7.0433 < 9.1562] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)V103.CB) [> 4.7876 = 7.9794 < 10.3732] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)V103.CB) [> 3.4663 = 5.7772 < 7.5103] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)P105.CB, (T0376)E165.CB) [> 4.2121 = 7.0201 < 9.1261] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)V103.CB, (T0376)V161.CB) [> 4.5345 = 7.5575 < 9.8247] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)I190.CB) [> 4.2030 = 7.0050 < 9.1065] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)L223.CB) [> 3.6083 = 6.0138 < 7.8179] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)A195.CB) [> 3.7669 = 6.2782 < 8.1617] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)A195.CB) [> 3.7550 = 6.2584 < 8.1359] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)M189.CB) [> 4.4257 = 7.3762 < 9.5891] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)G199.CA, (T0376)L278.CB) [> 4.6858 = 7.8096 < 10.1525] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)I75.CB, (T0376)A90.CB) [> 4.4049 = 7.3416 < 9.5440] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)G47.CA, (T0376)A90.CB) [> 4.4357 = 7.3928 < 9.6107] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)A90.CB) [> 3.6944 = 6.1573 < 8.0045] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)V43.CB, (T0376)L101.CB) [> 4.7875 = 7.9792 < 10.3730] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)V43.CB, (T0376)V76.CB) [> 3.7871 = 6.3118 < 8.2053] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)V134.CB, (T0376)G191.CA) [> 4.1225 = 6.8709 < 8.9321] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)V76.CB, (T0376)V134.CB) [> 3.1326 = 5.2210 < 6.7873] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)V76.CB, (T0376)M189.CB) [> 4.7080 = 7.8466 < 10.2005] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)T78.CB, (T0376)V134.CB) [> 4.4731 = 7.4552 < 9.6917] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)A84.CB, (T0376)M102.CB) [> 4.7330 = 7.8883 < 10.2548] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)L101.CB, (T0376)M189.CB) [> 3.8674 = 6.4457 < 8.3794] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)M102.CB, (T0376)S138.CB) [> 4.1289 = 6.8815 < 8.9459] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)G47.CA, (T0376)I75.CB) [> 2.3214 = 3.8690 < 5.0297] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)G47.CA, (T0376)V74.CB) [> 3.1627 = 5.2711 < 6.8525] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)Y45.CB, (T0376)P73.CB) [> 4.1126 = 6.8544 < 8.9107] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)M49.CB, (T0376)I75.CB) [> 3.9768 = 6.6281 < 8.6165] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)P73.CB, (T0376)L101.CB) [> 4.0253 = 6.7089 < 8.7216] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)P73.CB, (T0376)M102.CB) [> 3.2118 = 5.3530 < 6.9589] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)P73.CB, (T0376)V134.CB) [> 3.4196 = 5.6993 < 7.4091] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)V74.CB, (T0376)M102.CB) [> 4.1599 = 6.9332 < 9.0132] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)I75.CB, (T0376)I104.CB) [> 4.3846 = 7.3076 < 9.4999] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)L55.CB, (T0376)T78.CB) [> 4.5045 = 7.5075 < 9.7598] w=0.0154 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)M102.CB) [> 4.6554 = 7.7589 < 10.0866] w=0.0153 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)G77.CA) [> 3.7156 = 6.1927 < 8.0505] w=0.0153 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)S227.CB) [> 3.3367 = 5.5612 < 7.2295] w=0.0153 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)L223.CB) [> 3.7637 = 6.2728 < 8.1546] w=0.0153 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)L101.CB) [> 3.9688 = 6.6146 < 8.5990] w=0.0152 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)V103.CB) [> 3.9861 = 6.6435 < 8.6365] w=0.0152 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)L101.CB) [> 3.7055 = 6.1758 < 8.0286] w=0.0152 to align
# Constraint # added constraint: constraint((T0376)G47.CA, (T0376)V103.CB) [> 3.4217 = 5.7028 < 7.4137] w=0.0152 to align
# Constraint # added constraint: constraint((T0376)G47.CA, (T0376)S227.CB) [> 4.1807 = 6.9678 < 9.0581] w=0.0152 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)S227.CB) [> 4.5122 = 7.5203 < 9.7764] w=0.0152 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)T210.CB) [> 3.8254 = 6.3757 < 8.2884] w=0.0151 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)L223.CB) [> 3.5890 = 5.9816 < 7.7761] w=0.0151 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)G191.CA) [> 4.1861 = 6.9769 < 9.0700] w=0.0149 to align
# Constraint # added constraint: constraint((T0376)G162.CA, (T0376)G207.CA) [> 3.3497 = 5.5829 < 7.2577] w=0.0149 to align
# Constraint # added constraint: constraint((T0376)V161.CB, (T0376)G207.CA) [> 4.3281 = 7.2135 < 9.3776] w=0.0149 to align
# Constraint # added constraint: constraint((T0376)L55.CB, (T0376)I212.CB) [> 4.3257 = 7.2095 < 9.3724] w=0.0131 to align
# Constraint # added constraint: constraint((T0376)N214.CB, (T0376)A231.CB) [> 3.7480 = 6.2467 < 8.1207] w=0.0118 to align
# Constraint # added constraint: constraint((T0376)G191.CA, (T0376)T206.CB) [> 4.7431 = 7.9051 < 10.2767] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)F6.CB, (T0376)A230.CB) [> 4.1566 = 6.9277 < 9.0060] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)V201.CB) [> 3.8068 = 6.3447 < 8.2482] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)T206.CB) [> 4.4918 = 7.4863 < 9.7321] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)V261.CB) [> 3.9062 = 6.5103 < 8.4633] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)L223.CB) [> 3.1648 = 5.2746 < 6.8570] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)G191.CA) [> 4.4839 = 7.4732 < 9.7151] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)A42.CB) [> 3.9108 = 6.5180 < 8.4734] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)P53.CB, (T0376)T78.CB) [> 3.2445 = 5.4076 < 7.0299] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)G191.CA, (T0376)V261.CB) [> 4.6336 = 7.7226 < 10.0394] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)G191.CA, (T0376)L262.CB) [> 4.3078 = 7.1797 < 9.3337] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)V192.CB, (T0376)F280.CB) [> 4.6604 = 7.7673 < 10.0975] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)P16.CB, (T0376)M49.CB) [> 3.8942 = 6.4903 < 8.4373] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)G213.CA) [> 3.3404 = 5.5674 < 7.2376] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)S138.CB, (T0376)T194.CB) [> 4.7044 = 7.8407 < 10.1929] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)C46.CB, (T0376)I104.CB) [> 4.4095 = 7.3492 < 9.5539] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)P105.CB, (T0376)V134.CB) [> 4.5725 = 7.6209 < 9.9072] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)T78.CB) [> 4.3607 = 7.2678 < 9.4481] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)I104.CB, (T0376)A128.CB) [> 4.4073 = 7.3455 < 9.5492] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)G50.CA, (T0376)G111.CA) [> 3.6999 = 6.1665 < 8.0164] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)I135.CB, (T0376)T206.CB) [> 4.6080 = 7.6801 < 9.9841] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)E165.CB) [> 4.7528 = 7.9213 < 10.2977] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)E165.CB, (T0376)A208.CB) [> 4.5252 = 7.5421 < 9.8047] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)E165.CB, (T0376)I209.CB) [> 2.2509 = 3.7515 < 4.8769] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)E165.CB, (T0376)T210.CB) [> 4.7997 = 7.9995 < 10.3994] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)T194.CB) [> 4.3283 = 7.2139 < 9.3780] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)T194.CB) [> 3.6820 = 6.1367 < 7.9777] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)K31.CB, (T0376)T194.CB) [> 4.0339 = 6.7232 < 8.7402] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)G79.CA) [> 3.3014 = 5.5023 < 7.1530] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)T194.CB) [> 3.3469 = 5.5782 < 7.2517] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)T2.CB, (T0376)C203.CB) [> 4.6753 = 7.7921 < 10.1298] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)Y45.CB, (T0376)G79.CA) [> 3.8921 = 6.4868 < 8.4329] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)G191.CA) [> 4.1876 = 6.9793 < 9.0731] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)V44.CB, (T0376)I190.CB) [> 4.6101 = 7.6834 < 9.9885] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)G207.CA, (T0376)V261.CB) [> 4.6767 = 7.7946 < 10.1329] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)G111.CA, (T0376)N281.CB) [> 3.8487 = 6.4145 < 8.3389] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)S109.CB, (T0376)N281.CB) [> 4.3459 = 7.2431 < 9.4160] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)M49.CB, (T0376)F280.CB) [> 4.1955 = 6.9925 < 9.0903] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)M49.CB, (T0376)L278.CB) [> 3.6749 = 6.1248 < 7.9623] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)M49.CB, (T0376)A90.CB) [> 4.0365 = 6.7274 < 8.7457] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)V81.CB, (T0376)F280.CB) [> 3.7623 = 6.2705 < 8.1516] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)A247.CB, (T0376)Y263.CB) [> 2.8695 = 4.7826 < 6.2173] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)Y305.CB, (T0376)A314.CB) [> 3.3933 = 5.6556 < 7.3522] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)N302.CB, (T0376)A314.CB) [> 3.7357 = 6.2261 < 8.0940] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)V261.CB, (T0376)A314.CB) [> 4.4820 = 7.4700 < 9.7110] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)V261.CB, (T0376)W304.CB) [> 3.2618 = 5.4364 < 7.0673] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)V261.CB, (T0376)N302.CB) [> 3.2732 = 5.4553 < 7.0919] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)L223.CB, (T0376)Y263.CB) [> 4.6385 = 7.7309 < 10.0501] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)E219.CB, (T0376)V261.CB) [> 4.7509 = 7.9182 < 10.2936] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)N214.CB, (T0376)S227.CB) [> 2.7215 = 4.5358 < 5.8965] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)G47.CA, (T0376)I212.CB) [> 4.1592 = 6.9321 < 9.0117] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)I190.CB) [> 4.6401 = 7.7335 < 10.0535] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)I212.CB) [> 4.0141 = 6.6902 < 8.6972] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)I212.CB) [> 2.2847 = 3.8079 < 4.9502] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)L13.CB, (T0376)I212.CB) [> 3.9425 = 6.5708 < 8.5421] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)V74.CB) [> 4.6818 = 7.8030 < 10.1439] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)M189.CB) [> 4.6476 = 7.7461 < 10.0699] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)G213.CA) [> 3.8994 = 6.4990 < 8.4488] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)G162.CA, (T0376)G191.CA) [> 4.1204 = 6.8674 < 8.9276] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)L188.CB, (T0376)V201.CB) [> 3.2022 = 5.3370 < 6.9381] w=0.0077 to align
# Constraint # added constraint: constraint((T0376)T15.CB, (T0376)R106.CB) [> 3.7107 = 6.1845 < 8.0398] w=0.0076 to align
# Constraint # added constraint: constraint((T0376)M14.CB, (T0376)R106.CB) [> 4.6654 = 7.7757 < 10.1084] w=0.0076 to align
# Constraint # added constraint: constraint((T0376)S138.CB, (T0376)I209.CB) [> 4.5784 = 7.6307 < 9.9199] w=0.0074 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)T210.CB) [> 3.3347 = 5.5578 < 7.2252] w=0.0074 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)I209.CB) [> 3.7735 = 6.2891 < 8.1759] w=0.0074 to align
# Constraint # added constraint: constraint((T0376)N137.CB, (T0376)A208.CB) [> 3.4358 = 5.7264 < 7.4443] w=0.0074 to align
# Constraint # added constraint: constraint((T0376)S138.CB, (T0376)G213.CA) [> 4.5729 = 7.6215 < 9.9080] w=0.0074 to align
# Constraint # added constraint: constraint((T0376)S138.CB, (T0376)I212.CB) [> 3.5087 = 5.8478 < 7.6021] w=0.0074 to align
# Constraint # added constraint: constraint((T0376)S138.CB, (T0376)G211.CA) [> 3.5602 = 5.9337 < 7.7139] w=0.0074 to align
# Constraint # added constraint: constraint((T0376)S138.CB, (T0376)T210.CB) [> 4.2626 = 7.1043 < 9.2356] w=0.0074 to align
# Constraint # added constraint: constraint((T0376)A12.CB, (T0376)V74.CB) [> 4.5114 = 7.5191 < 9.7748] w=0.0073 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)I212.CB) [> 3.3507 = 5.5845 < 7.2598] w=0.0073 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)G162.CA) [> 4.3415 = 7.2359 < 9.4067] w=0.0072 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)N214.CB) [> 3.2698 = 5.4496 < 7.0845] w=0.0072 to align
# Constraint # added constraint: constraint((T0376)G162.CA, (T0376)A208.CB) [> 4.0200 = 6.7000 < 8.7100] w=0.0072 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)Y45.CB) [> 3.7650 = 6.2751 < 8.1576] w=0.0032 to align
# Constraint # added constraint: constraint((T0376)V9.CB, (T0376)N214.CB) [> 4.1142 = 6.8570 < 8.9141] w=0.0032 to align
# Constraint # added constraint: constraint((T0376)I10.CB, (T0376)G191.CA) [> 4.0008 = 6.6681 < 8.6685] w=0.0032 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)G47.CA) [> 2.9905 = 4.9842 < 6.4794] w=0.0032 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)G77.CA) [> 3.4587 = 5.7645 < 7.4938] w=0.0032 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)M102.CB) [> 3.8358 = 6.3930 < 8.3108] w=0.0032 to align
# Constraint # added constraint: constraint((T0376)P11.CB, (T0376)I104.CB) [> 4.1632 = 6.9387 < 9.0203] w=0.0032 to align
# Constraint # added constraint: constraint((T0376)F280.CB, (T0376)Q297.CB) [> 3.8939 = 6.4898 < 8.4367] w=0.0008 to align
# Constraint # added constraint: constraint((T0376)F280.CB, (T0376)F301.CB) [> 2.8556 = 4.7593 < 6.1870] w=0.0008 to align
# SetCost created cost = 
#	( 1.0000 * align )
# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0376/
# command:# reading script from file servers-clean.under
# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0376/decoys/
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS5
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS5
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS5
# ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1
# choosing archetypes in rotamer library
# Found a chain break before 280
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS1
# ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1
# Found a chain break before 252
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS2
# ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1
# Found a chain break before 291
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS3
# ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1
# Found a chain break before 272
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS4
# ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1
# Found a chain break before 272
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS5
# ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1
# Found a chain break before 316
# copying to AlignedFragments data structure
# naming current conformation BayesHH_TS1
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS1
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS2
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1
# Found a chain break before 274
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS3
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1
# Found a chain break before 274
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS4
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS5
# ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS1
# ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1
# Found a chain break before 313
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS2
# ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS3
# ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1
# Found a chain break before 291
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS4
# ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS5
# ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation CPHmodels_TS1
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS1
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS2
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS3
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS4
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS5
# ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Distill_TS1
# ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Distill_TS2
# ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Distill_TS3
# ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Distill_TS4
# ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Distill_TS5
# ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1
# Found a chain break before 315
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS1
# ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS2
# ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS3
# ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS4
# ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS5
# ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1
# Found a chain break before 303
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS1
# ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS2
# ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1
# Found a chain break before 313
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS3
# ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1
# Found a chain break before 310
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS4
# ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FAMS_TS5
# ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1
# Found a chain break before 299
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS1
# ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1
# Found a chain break before 275
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS2
# ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS3
# ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS4
# ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS5
# ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL1
# ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1
Skipped atom 97, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 98, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 99, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 100, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 333, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 334, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 335, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 336, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 433, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 434, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 435, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 436, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 645, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 646, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 647, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 648, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 733, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 734, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 735, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 736, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 773, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 774, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 775, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 776, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 881, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 882, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 883, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 884, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL2
# ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1
Skipped atom 986, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 988, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 990, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
Skipped atom 992, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL3
# ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1
Skipped atom 886, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 888, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 890, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
Skipped atom 892, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL4
# ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL5
# ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL1
# ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1
Skipped atom 986, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 988, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 990, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 992, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL2
# ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1
Skipped atom 882, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz
Skipped atom 884, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz
Skipped atom 886, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz
Skipped atom 888, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL3
# ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1
Skipped atom 97, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 98, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 99, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 100, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 333, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 334, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 335, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 336, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 433, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 434, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 435, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 436, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 645, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 646, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 647, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 648, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 733, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 734, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 735, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 736, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 773, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 774, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 775, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 776, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 881, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 882, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 883, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
Skipped atom 884, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL4
# ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL5
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1
# Found a chain break before 151
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS1
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1
# Found a chain break before 224
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS2
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1
# Found a chain break before 272
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS3
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS4
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1
# Found a chain break before 256
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS5
# ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS1
# ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS2
# ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS3
# ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS4
# ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1
# Found a chain break before 303
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS5
# ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL1
# ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL2
# ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL3
# ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL4
# ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL5
# ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS1
# ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1
# Found a chain break before 312
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS2
# ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS3
# ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1
# Found a chain break before 313
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS4
# ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1
# Found a chain break before 310
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS5
# ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1
# Found a chain break before 310
# copying to AlignedFragments data structure
# naming current conformation Frankenstein_TS1
# ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1
# Found a chain break before 307
# copying to AlignedFragments data structure
# naming current conformation Frankenstein_TS2
# ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1
# Found a chain break before 311
# copying to AlignedFragments data structure
# naming current conformation Frankenstein_TS3
# ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1
# Found a chain break before 284
# copying to AlignedFragments data structure
# naming current conformation Frankenstein_TS4
# ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# naming current conformation Frankenstein_TS5
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS1
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS3
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS4
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS5
# ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1
# Found a chain break before 260
# copying to AlignedFragments data structure
# naming current conformation HHpred1_TS1
# ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1
# Found a chain break before 260
# copying to AlignedFragments data structure
# naming current conformation HHpred2_TS1
# ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# naming current conformation HHpred3_TS1
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS1
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS2
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS3
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS4
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS5
# ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS1
# ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS2
# ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS3
# ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS4
# ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS5
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1
# Found a chain break before 260
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1
# Found a chain break before 301
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS2
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1
# Found a chain break before 190
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS3
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1
# Found a chain break before 274
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS4
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS5
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1
# Found a chain break before 301
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1
# Found a chain break before 310
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS2
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1
# Found a chain break before 241
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS3
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1
# Found a chain break before 190
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS4
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1
# Found a chain break before 310
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS5
# ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1
# Found a chain break before 317
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS1
# ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS2
# ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS3
# ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS4
# ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS5
# ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1
# Found a chain break before 300
# copying to AlignedFragments data structure
# naming current conformation NN_PUT_lab_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS2
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS3
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS4
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS5
# ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation PROTINFO_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1
# naming current conformation PROTINFO_TS2
# ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1
# naming current conformation PROTINFO_TS3
# ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1
# naming current conformation PROTINFO_TS4
# ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1
# Found a chain break before 128
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS5
# ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS1
# ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS2
# ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS3
# ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS4
# ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS5
# ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Phyre-1_TS1
# ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS1
# ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1
# Found a chain break before 318
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS2
# ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS3
# ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1
# Found a chain break before 282
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS4
# ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS5
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS1
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1
# Found a chain break before 209
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS2
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS3
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS4
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1
# Found a chain break before 251
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS5
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS1
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS2
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1
# Found a chain break before 306
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS3
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1
# Found a chain break before 277
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS4
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1
# Found a chain break before 280
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS5
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS1
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1
# Found a chain break before 311
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS2
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1
# Found a chain break before 305
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS3
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1
# Found a chain break before 314
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS4
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1
# Found a chain break before 315
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS5
# ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1
# Found a chain break before 215
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS1
# ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1
# Found a chain break before 260
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS2
# ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1
# Found a chain break before 301
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS3
# ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1
# Found a chain break before 260
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS4
# ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS5
# ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1
# Found a chain break before 251
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS1
# ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1
# Found a chain break before 282
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS2
# ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1
# Found a chain break before 209
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS3
# ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1
# Found a chain break before 209
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS4
# ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1
# Found a chain break before 276
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS5
# ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1
# Found a chain break before 274
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS1
# ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1
# Found a chain break before 280
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS2
# ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS3
# ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS4
# ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS5
# ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1
Skipped atom 890, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 892, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 894, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 896, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL1
# ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL2
# ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL3
# ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL4
# ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL5
# ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL1
# ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1
Skipped atom 1095, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL2
# ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL3
# ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1
Skipped atom 327, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL4
# ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL5
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1
# Found a chain break before 284
# copying to AlignedFragments data structure
# naming current conformation SAM_T06_server_TS1
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS2
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS3
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS4
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS5
# ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1
# Found a chain break before 280
# copying to AlignedFragments data structure
# naming current conformation SP3_TS1
# ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1
# Found a chain break before 274
# copying to AlignedFragments data structure
# naming current conformation SP3_TS2
# ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1
# Found a chain break before 215
# copying to AlignedFragments data structure
# naming current conformation SP3_TS3
# ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1
# Found a chain break before 215
# copying to AlignedFragments data structure
# naming current conformation SP3_TS4
# ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1
# Found a chain break before 260
# copying to AlignedFragments data structure
# naming current conformation SP3_TS5
# ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1
# Found a chain break before 274
# copying to AlignedFragments data structure
# naming current conformation SP4_TS1
# ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1
# Found a chain break before 280
# copying to AlignedFragments data structure
# naming current conformation SP4_TS2
# ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1
# Found a chain break before 260
# copying to AlignedFragments data structure
# naming current conformation SP4_TS3
# ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1
# Found a chain break before 215
# copying to AlignedFragments data structure
# naming current conformation SP4_TS4
# ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# naming current conformation SP4_TS5
# ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1
# Found a chain break before 300
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS1
# ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1
# Found a chain break before 280
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS2
# ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1
# Found a chain break before 272
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS3
# ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1
# Found a chain break before 215
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS4
# ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1
# Found a chain break before 260
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS5
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS1
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS2
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS3
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS4
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS5
# ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation UNI-EID_expm_TS1
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL1
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL2
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL3
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL4
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL5
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1
# Found a chain break before 314
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS1
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1
# Found a chain break before 310
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS2
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1
# Found a chain break before 311
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS3
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS4
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1
# Found a chain break before 305
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS5
# ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation beautshot_TS1
# ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation beautshotbase_TS1
# ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1
Skipped atom 986, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz
Skipped atom 988, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz
Skipped atom 990, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz
Skipped atom 992, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL1
# ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL2
# ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1
Skipped atom 882, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 884, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 886, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
Skipped atom 888, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL3
# ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL4
# ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL5
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1
# Found a chain break before 227
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1
# Found a chain break before 303
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1
# Found a chain break before 227
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1
# Found a chain break before 227
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1
# Found a chain break before 227
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS5
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1
# Found a chain break before 318
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1
WARNING: atoms too close: (T0376)M189.O and (T0376)I190.N only 0.000 apart, marking (T0376)I190.N as missing
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1
# Found a chain break before 318
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1
# Found a chain break before 318
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS5
# ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS5
# ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1
# naming current conformation keasar-server_TS1
# ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1
# Found a chain break before 134
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS2
# ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1
# Found a chain break before 136
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS3
# ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1
# naming current conformation keasar-server_TS4
# ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1
# naming current conformation keasar-server_TS5
# ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation mGen-3D_TS1
# ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS1
# ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS2
# ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS3
# ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1
WARNING: atom 1 has residue number 5  < previous residue 256  in servers/nFOLD_TS4.pdb.gz
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS4
# ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS5
# ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1
WARNING: atoms too close: (T0376)I5.N and (T0376)A119.N only 0.000 apart, marking (T0376)A119.N as missing
WARNING: atoms too close: (T0376)I5.CA and (T0376)A119.CA only 0.000 apart, marking (T0376)A119.CA as missing
WARNING: atoms too close: (T0376)I5.CB and (T0376)A119.CB only 0.000 apart, marking (T0376)A119.CB as missing
WARNING: atoms too close: (T0376)I5.O and (T0376)A119.O only 0.000 apart, marking (T0376)A119.O as missing
WARNING: atoms too close: (T0376)I5.C and (T0376)A119.C only 0.000 apart, marking (T0376)A119.C as missing
WARNING: atoms too close: (T0376)A119.N and (T0376)A127.N only 0.000 apart, marking (T0376)A119.N as missing
WARNING: atoms too close: (T0376)I5.N and (T0376)A127.N only 0.000 apart, marking (T0376)A127.N as missing
WARNING: atoms too close: (T0376)A119.CA and (T0376)A127.CA only 0.000 apart, marking (T0376)A127.CA as missing
WARNING: atoms too close: (T0376)I5.CA and (T0376)A127.CA only 0.000 apart, marking (T0376)A127.CA as missing
WARNING: atoms too close: (T0376)A119.CB and (T0376)A127.CB only 0.000 apart, marking (T0376)A127.CB as missing
WARNING: atoms too close: (T0376)I5.CB and (T0376)A127.CB only 0.000 apart, marking (T0376)A127.CB as missing
WARNING: atoms too close: (T0376)A119.O and (T0376)A127.O only 0.000 apart, marking (T0376)A127.O as missing
WARNING: atoms too close: (T0376)I5.O and (T0376)A127.O only 0.000 apart, marking (T0376)A127.O as missing
WARNING: atoms too close: (T0376)A119.C and (T0376)A127.C only 0.000 apart, marking (T0376)A127.C as missing
WARNING: atoms too close: (T0376)I5.C and (T0376)A127.C only 0.000 apart, marking (T0376)A127.C as missing
WARNING: atoms too close: (T0376)A127.N and (T0376)P169.N only 0.000 apart, marking (T0376)A127.N as missing
WARNING: atoms too close: (T0376)A119.N and (T0376)P169.N only 0.000 apart, marking (T0376)A119.N as missing
WARNING: atoms too close: (T0376)I5.N and (T0376)P169.N only 0.000 apart, marking (T0376)P169.N as missing
WARNING: atoms too close: (T0376)A127.CA and (T0376)P169.CA only 0.000 apart, marking (T0376)P169.CA as missing
WARNING: atoms too close: (T0376)A119.CA and (T0376)P169.CA only 0.000 apart, marking (T0376)P169.CA as missing
WARNING: atoms too close: (T0376)I5.CA and (T0376)P169.CA only 0.000 apart, marking (T0376)P169.CA as missing
WARNING: atoms too close: (T0376)A127.CB and (T0376)P169.CB only 0.000 apart, marking (T0376)P169.CB as missing
WARNING: atoms too close: (T0376)A119.CB and (T0376)P169.CB only 0.000 apart, marking (T0376)P169.CB as missing
WARNING: atoms too close: (T0376)I5.CB and (T0376)P169.CB only 0.000 apart, marking (T0376)P169.CB as missing
WARNING: atoms too close: (T0376)A127.O and (T0376)P169.O only 0.000 apart, marking (T0376)P169.O as missing
WARNING: atoms too close: (T0376)A119.O and (T0376)P169.O only 0.000 apart, marking (T0376)P169.O as missing
WARNING: atoms too close: (T0376)I5.O and (T0376)P169.O only 0.000 apart, marking (T0376)P169.O as missing
WARNING: atoms too close: (T0376)A127.C and (T0376)P169.C only 0.000 apart, marking (T0376)P169.C as missing
WARNING: atoms too close: (T0376)A119.C and (T0376)P169.C only 0.000 apart, marking (T0376)P169.C as missing
WARNING: atoms too close: (T0376)I5.C and (T0376)P169.C only 0.000 apart, marking (T0376)P169.C as missing
WARNING: atoms too close: (T0376)P169.N and (T0376)A170.N only 0.000 apart, marking (T0376)P169.N as missing
WARNING: atoms too close: (T0376)A127.N and (T0376)A170.N only 0.000 apart, marking (T0376)A127.N as missing
WARNING: atoms too close: (T0376)A119.N and (T0376)A170.N only 0.000 apart, marking (T0376)A119.N as missing
WARNING: atoms too close: (T0376)I5.N and (T0376)A170.N only 0.000 apart, marking (T0376)A170.N as missing
WARNING: atoms too close: (T0376)P169.CA and (T0376)A170.CA only 0.000 apart, marking (T0376)A170.CA as missing
WARNING: atoms too close: (T0376)A127.CA and (T0376)A170.CA only 0.000 apart, marking (T0376)A170.CA as missing
WARNING: atoms too close: (T0376)A119.CA and (T0376)A170.CA only 0.000 apart, marking (T0376)A170.CA as missing
WARNING: atoms too close: (T0376)I5.CA and (T0376)A170.CA only 0.000 apart, marking (T0376)A170.CA as missing
WARNING: atoms too close: (T0376)P169.CB and (T0376)A170.CB only 0.000 apart, marking (T0376)A170.CB as missing
WARNING: atoms too close: (T0376)A127.CB and (T0376)A170.CB only 0.000 apart, marking (T0376)A170.CB as missing
WARNING: atoms too close: (T0376)A119.CB and (T0376)A170.CB only 0.000 apart, marking (T0376)A170.CB as missing
WARNING: atoms too close: (T0376)I5.CB and (T0376)A170.CB only 0.000 apart, marking (T0376)A170.CB as missing
WARNING: atoms too close: (T0376)P169.O and (T0376)A170.O only 0.000 apart, marking (T0376)A170.O as missing
WARNING: atoms too close: (T0376)A127.O and (T0376)A170.O only 0.000 apart, marking (T0376)A170.O as missing
WARNING: atoms too close: (T0376)A119.O and (T0376)A170.O only 0.000 apart, marking (T0376)A170.O as missing
WARNING: atoms too close: (T0376)I5.O and (T0376)A170.O only 0.000 apart, marking (T0376)A170.O as missing
WARNING: atoms too close: (T0376)P169.C and (T0376)A170.C only 0.000 apart, marking (T0376)A170.C as missing
WARNING: atoms too close: (T0376)A127.C and (T0376)A170.C only 0.000 apart, marking (T0376)A170.C as missing
WARNING: atoms too close: (T0376)A119.C and (T0376)A170.C only 0.000 apart, marking (T0376)A170.C as missing
WARNING: atoms too close: (T0376)I5.C and (T0376)A170.C only 0.000 apart, marking (T0376)A170.C as missing
WARNING: atoms too close: (T0376)A170.N and (T0376)G199.N only 0.000 apart, marking (T0376)A170.N as missing
WARNING: atoms too close: (T0376)P169.N and (T0376)G199.N only 0.000 apart, marking (T0376)P169.N as missing
WARNING: atoms too close: (T0376)A127.N and (T0376)G199.N only 0.000 apart, marking (T0376)A127.N as missing
WARNING: atoms too close: (T0376)A119.N and (T0376)G199.N only 0.000 apart, marking (T0376)A119.N as missing
WARNING: atoms too close: (T0376)I5.N and (T0376)G199.N only 0.000 apart, marking (T0376)G199.N as missing
WARNING: atoms too close: (T0376)A170.CA and (T0376)G199.CA only 0.000 apart, marking (T0376)G199.CA as missing
WARNING: atoms too close: (T0376)P169.CA and (T0376)G199.CA only 0.000 apart, marking (T0376)G199.CA as missing
WARNING: atoms too close: (T0376)A127.CA and (T0376)G199.CA only 0.000 apart, marking (T0376)G199.CA as missing
WARNING: atoms too close: (T0376)A119.CA and (T0376)G199.CA only 0.000 apart, marking (T0376)G199.CA as missing
WARNING: atoms too close: (T0376)I5.CA and (T0376)G199.CA only 0.000 apart, marking (T0376)G199.CA as missing
WARNING: atoms too close: (T0376)A170.O and (T0376)G199.O only 0.000 apart, marking (T0376)G199.O as missing
WARNING: atoms too close: (T0376)P169.O and (T0376)G199.O only 0.000 apart, marking (T0376)G199.O as missing
WARNING: atoms too close: (T0376)A127.O and (T0376)G199.O only 0.000 apart, marking (T0376)G199.O as missing
WARNING: atoms too close: (T0376)A119.O and (T0376)G199.O only 0.000 apart, marking (T0376)G199.O as missing
WARNING: atoms too close: (T0376)I5.O and (T0376)G199.O only 0.000 apart, marking (T0376)G199.O as missing
WARNING: atoms too close: (T0376)A170.C and (T0376)G199.C only 0.000 apart, marking (T0376)G199.C as missing
WARNING: atoms too close: (T0376)P169.C and (T0376)G199.C only 0.000 apart, marking (T0376)G199.C as missing
WARNING: atoms too close: (T0376)A127.C and (T0376)G199.C only 0.000 apart, marking (T0376)G199.C as missing
WARNING: atoms too close: (T0376)A119.C and (T0376)G199.C only 0.000 apart, marking (T0376)G199.C as missing
WARNING: atoms too close: (T0376)I5.C and (T0376)G199.C only 0.000 apart, marking (T0376)G199.C as missing
WARNING: atoms too close: (T0376)G199.N and (T0376)L251.N only 0.000 apart, marking (T0376)G199.N as missing
WARNING: atoms too close: (T0376)A170.N and (T0376)L251.N only 0.000 apart, marking (T0376)A170.N as missing
WARNING: atoms too close: (T0376)P169.N and (T0376)L251.N only 0.000 apart, marking (T0376)P169.N as missing
WARNING: atoms too close: (T0376)A127.N and (T0376)L251.N only 0.000 apart, marking (T0376)A127.N as missing
WARNING: atoms too close: (T0376)A119.N and (T0376)L251.N only 0.000 apart, marking (T0376)A119.N as missing
WARNING: atoms too close: (T0376)I5.N and (T0376)L251.N only 0.000 apart, marking (T0376)L251.N as missing
WARNING: atoms too close: (T0376)G199.CA and (T0376)L251.CA only 0.000 apart, marking (T0376)L251.CA as missing
WARNING: atoms too close: (T0376)A170.CA and (T0376)L251.CA only 0.000 apart, marking (T0376)L251.CA as missing
WARNING: atoms too close: (T0376)P169.CA and (T0376)L251.CA only 0.000 apart, marking (T0376)L251.CA as missing
WARNING: atoms too close: (T0376)A127.CA and (T0376)L251.CA only 0.000 apart, marking (T0376)L251.CA as missing
WARNING: atoms too close: (T0376)A119.CA and (T0376)L251.CA only 0.000 apart, marking (T0376)L251.CA as missing
WARNING: atoms too close: (T0376)I5.CA and (T0376)L251.CA only 0.000 apart, marking (T0376)L251.CA as missing
WARNING: atoms too close: (T0376)A170.CB and (T0376)L251.CB only 0.000 apart, marking (T0376)L251.CB as missing
WARNING: atoms too close: (T0376)P169.CB and (T0376)L251.CB only 0.000 apart, marking (T0376)L251.CB as missing
WARNING: atoms too close: (T0376)A127.CB and (T0376)L251.CB only 0.000 apart, marking (T0376)L251.CB as missing
WARNING: atoms too close: (T0376)A119.CB and (T0376)L251.CB only 0.000 apart, marking (T0376)L251.CB as missing
WARNING: atoms too close: (T0376)I5.CB and (T0376)L251.CB only 0.000 apart, marking (T0376)L251.CB as missing
WARNING: atoms too close: (T0376)I5.CG1 and (T0376)L251.CG only 0.000 apart, marking (T0376)L251.CG as missing
WARNING: atoms too close: (T0376)G199.O and (T0376)L251.O only 0.000 apart, marking (T0376)L251.O as missing
WARNING: atoms too close: (T0376)A170.O and (T0376)L251.O only 0.000 apart, marking (T0376)L251.O as missing
WARNING: atoms too close: (T0376)P169.O and (T0376)L251.O only 0.000 apart, marking (T0376)L251.O as missing
WARNING: atoms too close: (T0376)A127.O and (T0376)L251.O only 0.000 apart, marking (T0376)L251.O as missing
WARNING: atoms too close: (T0376)A119.O and (T0376)L251.O only 0.000 apart, marking (T0376)L251.O as missing
WARNING: atoms too close: (T0376)I5.O and (T0376)L251.O only 0.000 apart, marking (T0376)L251.O as missing
WARNING: atoms too close: (T0376)G199.C and (T0376)L251.C only 0.000 apart, marking (T0376)L251.C as missing
WARNING: atoms too close: (T0376)A170.C and (T0376)L251.C only 0.000 apart, marking (T0376)L251.C as missing
WARNING: atoms too close: (T0376)P169.C and (T0376)L251.C only 0.000 apart, marking (T0376)L251.C as missing
WARNING: atoms too close: (T0376)A127.C and (T0376)L251.C only 0.000 apart, marking (T0376)L251.C as missing
WARNING: atoms too close: (T0376)A119.C and (T0376)L251.C only 0.000 apart, marking (T0376)L251.C as missing
WARNING: atoms too close: (T0376)I5.C and (T0376)L251.C only 0.000 apart, marking (T0376)L251.C as missing
WARNING: atoms too close: (T0376)L251.N and (T0376)S252.N only 0.000 apart, marking (T0376)L251.N as missing
WARNING: atoms too close: (T0376)G199.N and (T0376)S252.N only 0.000 apart, marking (T0376)G199.N as missing
WARNING: atoms too close: (T0376)A170.N and (T0376)S252.N only 0.000 apart, marking (T0376)A170.N as missing
WARNING: atoms too close: (T0376)P169.N and (T0376)S252.N only 0.000 apart, marking (T0376)P169.N as missing
WARNING: atoms too close: (T0376)A127.N and (T0376)S252.N only 0.000 apart, marking (T0376)A127.N as missing
WARNING: atoms too close: (T0376)A119.N and (T0376)S252.N only 0.000 apart, marking (T0376)A119.N as missing
WARNING: atoms too close: (T0376)I5.N and (T0376)S252.N only 0.000 apart, marking (T0376)S252.N as missing
WARNING: atoms too close: (T0376)L251.CA and (T0376)S252.CA only 0.000 apart, marking (T0376)S252.CA as missing
WARNING: atoms too close: (T0376)G199.CA and (T0376)S252.CA only 0.000 apart, marking (T0376)S252.CA as missing
WARNING: atoms too close: (T0376)A170.CA and (T0376)S252.CA only 0.000 apart, marking (T0376)S252.CA as missing
WARNING: atoms too close: (T0376)P169.CA and (T0376)S252.CA only 0.000 apart, marking (T0376)S252.CA as missing
WARNING: atoms too close: (T0376)A127.CA and (T0376)S252.CA only 0.000 apart, marking (T0376)S252.CA as missing
WARNING: atoms too close: (T0376)A119.CA and (T0376)S252.CA only 0.000 apart, marking (T0376)S252.CA as missing
WARNING: atoms too close: (T0376)I5.CA and (T0376)S252.CA only 0.000 apart, marking (T0376)S252.CA as missing
WARNING: atoms too close: (T0376)L251.CB and (T0376)S252.CB only 0.000 apart, marking (T0376)S252.CB as missing
WARNING: atoms too close: (T0376)A170.CB and (T0376)S252.CB only 0.000 apart, marking (T0376)S252.CB as missing
WARNING: atoms too close: (T0376)P169.CB and (T0376)S252.CB only 0.000 apart, marking (T0376)S252.CB as missing
WARNING: atoms too close: (T0376)A127.CB and (T0376)S252.CB only 0.000 apart, marking (T0376)S252.CB as missing
WARNING: atoms too close: (T0376)A119.CB and (T0376)S252.CB only 0.000 apart, marking (T0376)S252.CB as missing
WARNING: atoms too close: (T0376)I5.CB and (T0376)S252.CB only 0.000 apart, marking (T0376)S252.CB as missing
WARNING: atoms too close: (T0376)L251.O and (T0376)S252.O only 0.000 apart, marking (T0376)S252.O as missing
WARNING: atoms too close: (T0376)G199.O and (T0376)S252.O only 0.000 apart, marking (T0376)S252.O as missing
WARNING: atoms too close: (T0376)A170.O and (T0376)S252.O only 0.000 apart, marking (T0376)S252.O as missing
WARNING: atoms too close: (T0376)P169.O and (T0376)S252.O only 0.000 apart, marking (T0376)S252.O as missing
WARNING: atoms too close: (T0376)A127.O and (T0376)S252.O only 0.000 apart, marking (T0376)S252.O as missing
WARNING: atoms too close: (T0376)A119.O and (T0376)S252.O only 0.000 apart, marking (T0376)S252.O as missing
WARNING: atoms too close: (T0376)I5.O and (T0376)S252.O only 0.000 apart, marking (T0376)S252.O as missing
WARNING: atoms too close: (T0376)L251.C and (T0376)S252.C only 0.000 apart, marking (T0376)S252.C as missing
WARNING: atoms too close: (T0376)G199.C and (T0376)S252.C only 0.000 apart, marking (T0376)S252.C as missing
WARNING: atoms too close: (T0376)A170.C and (T0376)S252.C only 0.000 apart, marking (T0376)S252.C as missing
WARNING: atoms too close: (T0376)P169.C and (T0376)S252.C only 0.000 apart, marking (T0376)S252.C as missing
WARNING: atoms too close: (T0376)A127.C and (T0376)S252.C only 0.000 apart, marking (T0376)S252.C as missing
WARNING: atoms too close: (T0376)A119.C and (T0376)S252.C only 0.000 apart, marking (T0376)S252.C as missing
WARNING: atoms too close: (T0376)I5.C and (T0376)S252.C only 0.000 apart, marking (T0376)S252.C as missing
WARNING: atoms too close: (T0376)S252.N and (T0376)S253.N only 0.000 apart, marking (T0376)S252.N as missing
WARNING: atoms too close: (T0376)L251.N and (T0376)S253.N only 0.000 apart, marking (T0376)L251.N as missing
WARNING: atoms too close: (T0376)G199.N and (T0376)S253.N only 0.000 apart, marking (T0376)G199.N as missing
WARNING: atoms too close: (T0376)A170.N and (T0376)S253.N only 0.000 apart, marking (T0376)A170.N as missing
WARNING: atoms too close: (T0376)P169.N and (T0376)S253.N only 0.000 apart, marking (T0376)P169.N as missing
WARNING: atoms too close: (T0376)A127.N and (T0376)S253.N only 0.000 apart, marking (T0376)A127.N as missing
WARNING: atoms too close: (T0376)A119.N and (T0376)S253.N only 0.000 apart, marking (T0376)A119.N as missing
WARNING: atoms too close: (T0376)I5.N and (T0376)S253.N only 0.000 apart, marking (T0376)S253.N as missing
WARNING: atoms too close: (T0376)S252.CA and (T0376)S253.CA only 0.000 apart, marking (T0376)S253.CA as missing
WARNING: atoms too close: (T0376)L251.CA and (T0376)S253.CA only 0.000 apart, marking (T0376)S253.CA as missing
WARNING: atoms too close: (T0376)G199.CA and (T0376)S253.CA only 0.000 apart, marking (T0376)S253.CA as missing
WARNING: atoms too close: (T0376)A170.CA and (T0376)S253.CA only 0.000 apart, marking (T0376)S253.CA as missing
WARNING: atoms too close: (T0376)P169.CA and (T0376)S253.CA only 0.000 apart, marking (T0376)S253.CA as missing
WARNING: atoms too close: (T0376)A127.CA and (T0376)S253.CA only 0.000 apart, marking (T0376)S253.CA as missing
WARNING: atoms too close: (T0376)A119.CA and (T0376)S253.CA only 0.000 apart, marking (T0376)S253.CA as missing
WARNING: atoms too close: (T0376)I5.CA and (T0376)S253.CA only 0.000 apart, marking (T0376)S253.CA as missing
WARNING: atoms too close: (T0376)S252.CB and (T0376)S253.CB only 0.000 apart, marking (T0376)S253.CB as missing
WARNING: atoms too close: (T0376)L251.CB and (T0376)S253.CB only 0.000 apart, marking (T0376)S253.CB as missing
WARNING: atoms too close: (T0376)A170.CB and (T0376)S253.CB only 0.000 apart, marking (T0376)S253.CB as missing
WARNING: atoms too close: (T0376)P169.CB and (T0376)S253.CB only 0.000 apart, marking (T0376)S253.CB as missing
WARNING: atoms too close: (T0376)A127.CB and (T0376)S253.CB only 0.000 apart, marking (T0376)S253.CB as missing
WARNING: atoms too close: (T0376)A119.CB and (T0376)S253.CB only 0.000 apart, marking (T0376)S253.CB as missing
WARNING: atoms too close: (T0376)I5.CB and (T0376)S253.CB only 0.000 apart, marking (T0376)S253.CB as missing
WARNING: atoms too close: (T0376)S252.O and (T0376)S253.O only 0.000 apart, marking (T0376)S253.O as missing
WARNING: atoms too close: (T0376)L251.O and (T0376)S253.O only 0.000 apart, marking (T0376)S253.O as missing
WARNING: atoms too close: (T0376)G199.O and (T0376)S253.O only 0.000 apart, marking (T0376)S253.O as missing
WARNING: atoms too close: (T0376)A170.O and (T0376)S253.O only 0.000 apart, marking (T0376)S253.O as missing
WARNING: atoms too close: (T0376)P169.O and (T0376)S253.O only 0.000 apart, marking (T0376)S253.O as missing
WARNING: atoms too close: (T0376)A127.O and (T0376)S253.O only 0.000 apart, marking (T0376)S253.O as missing
WARNING: atoms too close: (T0376)A119.O and (T0376)S253.O only 0.000 apart, marking (T0376)S253.O as missing
WARNING: atoms too close: (T0376)I5.O and (T0376)S253.O only 0.000 apart, marking (T0376)S253.O as missing
WARNING: atoms too close: (T0376)S252.C and (T0376)S253.C only 0.000 apart, marking (T0376)S253.C as missing
WARNING: atoms too close: (T0376)L251.C and (T0376)S253.C only 0.000 apart, marking (T0376)S253.C as missing
WARNING: atoms too close: (T0376)G199.C and (T0376)S253.C only 0.000 apart, marking (T0376)S253.C as missing
WARNING: atoms too close: (T0376)A170.C and (T0376)S253.C only 0.000 apart, marking (T0376)S253.C as missing
WARNING: atoms too close: (T0376)P169.C and (T0376)S253.C only 0.000 apart, marking (T0376)S253.C as missing
WARNING: atoms too close: (T0376)A127.C and (T0376)S253.C only 0.000 apart, marking (T0376)S253.C as missing
WARNING: atoms too close: (T0376)A119.C and (T0376)S253.C only 0.000 apart, marking (T0376)S253.C as missing
WARNING: atoms too close: (T0376)I5.C and (T0376)S253.C only 0.000 apart, marking (T0376)S253.C as missing
WARNING: atoms too close: (T0376)S253.N and (T0376)F254.N only 0.000 apart, marking (T0376)S253.N as missing
WARNING: atoms too close: (T0376)S252.N and (T0376)F254.N only 0.000 apart, marking (T0376)S252.N as missing
WARNING: atoms too close: (T0376)L251.N and (T0376)F254.N only 0.000 apart, marking (T0376)L251.N as missing
WARNING: atoms too close: (T0376)G199.N and (T0376)F254.N only 0.000 apart, marking (T0376)G199.N as missing
WARNING: atoms too close: (T0376)A170.N and (T0376)F254.N only 0.000 apart, marking (T0376)A170.N as missing
WARNING: atoms too close: (T0376)P169.N and (T0376)F254.N only 0.000 apart, marking (T0376)P169.N as missing
WARNING: atoms too close: (T0376)A127.N and (T0376)F254.N only 0.000 apart, marking (T0376)A127.N as missing
WARNING: atoms too close: (T0376)A119.N and (T0376)F254.N only 0.000 apart, marking (T0376)A119.N as missing
WARNING: atoms too close: (T0376)I5.N and (T0376)F254.N only 0.000 apart, marking (T0376)F254.N as missing
WARNING: atoms too close: (T0376)S253.CA and (T0376)F254.CA only 0.000 apart, marking (T0376)F254.CA as missing
WARNING: atoms too close: (T0376)S252.CA and (T0376)F254.CA only 0.000 apart, marking (T0376)F254.CA as missing
WARNING: atoms too close: (T0376)L251.CA and (T0376)F254.CA only 0.000 apart, marking (T0376)F254.CA as missing
WARNING: atoms too close: (T0376)G199.CA and (T0376)F254.CA only 0.000 apart, marking (T0376)F254.CA as missing
WARNING: atoms too close: (T0376)A170.CA and (T0376)F254.CA only 0.000 apart, marking (T0376)F254.CA as missing
WARNING: atoms too close: (T0376)P169.CA and (T0376)F254.CA only 0.000 apart, marking (T0376)F254.CA as missing
WARNING: atoms too close: (T0376)A127.CA and (T0376)F254.CA only 0.000 apart, marking (T0376)F254.CA as missing
WARNING: atoms too close: (T0376)A119.CA and (T0376)F254.CA only 0.000 apart, marking (T0376)F254.CA as missing
WARNING: atoms too close: (T0376)I5.CA and (T0376)F254.CA only 0.000 apart, marking (T0376)F254.CA as missing
WARNING: atoms too close: (T0376)S253.CB and (T0376)F254.CB only 0.000 apart, marking (T0376)F254.CB as missing
WARNING: atoms too close: (T0376)S252.CB and (T0376)F254.CB only 0.000 apart, marking (T0376)F254.CB as missing
WARNING: atoms too close: (T0376)L251.CB and (T0376)F254.CB only 0.000 apart, marking (T0376)F254.CB as missing
WARNING: atoms too close: (T0376)A170.CB and (T0376)F254.CB only 0.000 apart, marking (T0376)F254.CB as missing
WARNING: atoms too close: (T0376)P169.CB and (T0376)F254.CB only 0.000 apart, marking (T0376)F254.CB as missing
WARNING: atoms too close: (T0376)A127.CB and (T0376)F254.CB only 0.000 apart, marking (T0376)F254.CB as missing
WARNING: atoms too close: (T0376)A119.CB and (T0376)F254.CB only 0.000 apart, marking (T0376)F254.CB as missing
WARNING: atoms too close: (T0376)I5.CB and (T0376)F254.CB only 0.000 apart, marking (T0376)F254.CB as missing
WARNING: atoms too close: (T0376)L251.CG and (T0376)F254.CG only 0.000 apart, marking (T0376)F254.CG as missing
WARNING: atoms too close: (T0376)I5.CG1 and (T0376)F254.CG only 0.000 apart, marking (T0376)F254.CG as missing
WARNING: atoms too close: (T0376)S253.O and (T0376)F254.O only 0.000 apart, marking (T0376)F254.O as missing
WARNING: atoms too close: (T0376)S252.O and (T0376)F254.O only 0.000 apart, marking (T0376)F254.O as missing
WARNING: atoms too close: (T0376)L251.O and (T0376)F254.O only 0.000 apart, marking (T0376)F254.O as missing
WARNING: atoms too close: (T0376)G199.O and (T0376)F254.O only 0.000 apart, marking (T0376)F254.O as missing
WARNING: atoms too close: (T0376)A170.O and (T0376)F254.O only 0.000 apart, marking (T0376)F254.O as missing
WARNING: atoms too close: (T0376)P169.O and (T0376)F254.O only 0.000 apart, marking (T0376)F254.O as missing
WARNING: atoms too close: (T0376)A127.O and (T0376)F254.O only 0.000 apart, marking (T0376)F254.O as missing
WARNING: atoms too close: (T0376)A119.O and (T0376)F254.O only 0.000 apart, marking (T0376)F254.O as missing
WARNING: atoms too close: (T0376)I5.O and (T0376)F254.O only 0.000 apart, marking (T0376)F254.O as missing
WARNING: atoms too close: (T0376)S253.C and (T0376)F254.C only 0.000 apart, marking (T0376)F254.C as missing
WARNING: atoms too close: (T0376)S252.C and (T0376)F254.C only 0.000 apart, marking (T0376)F254.C as missing
WARNING: atoms too close: (T0376)L251.C and (T0376)F254.C only 0.000 apart, marking (T0376)F254.C as missing
WARNING: atoms too close: (T0376)G199.C and (T0376)F254.C only 0.000 apart, marking (T0376)F254.C as missing
WARNING: atoms too close: (T0376)A170.C and (T0376)F254.C only 0.000 apart, marking (T0376)F254.C as missing
WARNING: atoms too close: (T0376)P169.C and (T0376)F254.C only 0.000 apart, marking (T0376)F254.C as missing
WARNING: atoms too close: (T0376)A127.C and (T0376)F254.C only 0.000 apart, marking (T0376)F254.C as missing
WARNING: atoms too close: (T0376)A119.C and (T0376)F254.C only 0.000 apart, marking (T0376)F254.C as missing
WARNING: atoms too close: (T0376)I5.C and (T0376)F254.C only 0.000 apart, marking (T0376)F254.C as missing
WARNING: atoms too close: (T0376)F254.N and (T0376)G272.N only 0.000 apart, marking (T0376)F254.N as missing
WARNING: atoms too close: (T0376)S253.N and (T0376)G272.N only 0.000 apart, marking (T0376)S253.N as missing
WARNING: atoms too close: (T0376)S252.N and (T0376)G272.N only 0.000 apart, marking (T0376)S252.N as missing
WARNING: atoms too close: (T0376)L251.N and (T0376)G272.N only 0.000 apart, marking (T0376)L251.N as missing
WARNING: atoms too close: (T0376)G199.N and (T0376)G272.N only 0.000 apart, marking (T0376)G199.N as missing
WARNING: atoms too close: (T0376)A170.N and (T0376)G272.N only 0.000 apart, marking (T0376)A170.N as missing
WARNING: atoms too close: (T0376)P169.N and (T0376)G272.N only 0.000 apart, marking (T0376)P169.N as missing
WARNING: atoms too close: (T0376)A127.N and (T0376)G272.N only 0.000 apart, marking (T0376)A127.N as missing
WARNING: atoms too close: (T0376)A119.N and (T0376)G272.N only 0.000 apart, marking (T0376)A119.N as missing
WARNING: atoms too close: (T0376)I5.N and (T0376)G272.N only 0.000 apart, marking (T0376)G272.N as missing
WARNING: atoms too close: (T0376)F254.CA and (T0376)G272.CA only 0.000 apart, marking (T0376)G272.CA as missing
WARNING: atoms too close: (T0376)S253.CA and (T0376)G272.CA only 0.000 apart, marking (T0376)G272.CA as missing
WARNING: atoms too close: (T0376)S252.CA and (T0376)G272.CA only 0.000 apart, marking (T0376)G272.CA as missing
WARNING: atoms too close: (T0376)L251.CA and (T0376)G272.CA only 0.000 apart, marking (T0376)G272.CA as missing
WARNING: atoms too close: (T0376)G199.CA and (T0376)G272.CA only 0.000 apart, marking (T0376)G272.CA as missing
WARNING: atoms too close: (T0376)A170.CA and (T0376)G272.CA only 0.000 apart, marking (T0376)G272.CA as missing
WARNING: atoms too close: (T0376)P169.CA and (T0376)G272.CA only 0.000 apart, marking (T0376)G272.CA as missing
WARNING: atoms too close: (T0376)A127.CA and (T0376)G272.CA only 0.000 apart, marking (T0376)G272.CA as missing
WARNING: atoms too close: (T0376)A119.CA and (T0376)G272.CA only 0.000 apart, marking (T0376)G272.CA as missing
WARNING: atoms too close: (T0376)I5.CA and (T0376)G272.CA only 0.000 apart, marking (T0376)G272.CA as missing
WARNING: atoms too close: (T0376)F254.O and (T0376)G272.O only 0.000 apart, marking (T0376)G272.O as missing
WARNING: atoms too close: (T0376)S253.O and (T0376)G272.O only 0.000 apart, marking (T0376)G272.O as missing
WARNING: atoms too close: (T0376)S252.O and (T0376)G272.O only 0.000 apart, marking (T0376)G272.O as missing
WARNING: atoms too close: (T0376)L251.O and (T0376)G272.O only 0.000 apart, marking (T0376)G272.O as missing
WARNING: atoms too close: (T0376)G199.O and (T0376)G272.O only 0.000 apart, marking (T0376)G272.O as missing
WARNING: atoms too close: (T0376)A170.O and (T0376)G272.O only 0.000 apart, marking (T0376)G272.O as missing
WARNING: atoms too close: (T0376)P169.O and (T0376)G272.O only 0.000 apart, marking (T0376)G272.O as missing
WARNING: atoms too close: (T0376)A127.O and (T0376)G272.O only 0.000 apart, marking (T0376)G272.O as missing
WARNING: atoms too close: (T0376)A119.O and (T0376)G272.O only 0.000 apart, marking (T0376)G272.O as missing
WARNING: atoms too close: (T0376)I5.O and (T0376)G272.O only 0.000 apart, marking (T0376)G272.O as missing
WARNING: atoms too close: (T0376)F254.C and (T0376)G272.C only 0.000 apart, marking (T0376)G272.C as missing
WARNING: atoms too close: (T0376)S253.C and (T0376)G272.C only 0.000 apart, marking (T0376)G272.C as missing
WARNING: atoms too close: (T0376)S252.C and (T0376)G272.C only 0.000 apart, marking (T0376)G272.C as missing
WARNING: atoms too close: (T0376)L251.C and (T0376)G272.C only 0.000 apart, marking (T0376)G272.C as missing
WARNING: atoms too close: (T0376)G199.C and (T0376)G272.C only 0.000 apart, marking (T0376)G272.C as missing
WARNING: atoms too close: (T0376)A170.C and (T0376)G272.C only 0.000 apart, marking (T0376)G272.C as missing
WARNING: atoms too close: (T0376)P169.C and (T0376)G272.C only 0.000 apart, marking (T0376)G272.C as missing
WARNING: atoms too close: (T0376)A127.C and (T0376)G272.C only 0.000 apart, marking (T0376)G272.C as missing
WARNING: atoms too close: (T0376)A119.C and (T0376)G272.C only 0.000 apart, marking (T0376)G272.C as missing
WARNING: atoms too close: (T0376)I5.C and (T0376)G272.C only 0.000 apart, marking (T0376)G272.C as missing
WARNING: atoms too close: (T0376)G272.N and (T0376)D273.N only 0.000 apart, marking (T0376)G272.N as missing
WARNING: atoms too close: (T0376)F254.N and (T0376)D273.N only 0.000 apart, marking (T0376)F254.N as missing
WARNING: atoms too close: (T0376)S253.N and (T0376)D273.N only 0.000 apart, marking (T0376)S253.N as missing
WARNING: atoms too close: (T0376)S252.N and (T0376)D273.N only 0.000 apart, marking (T0376)S252.N as missing
WARNING: atoms too close: (T0376)L251.N and (T0376)D273.N only 0.000 apart, marking (T0376)L251.N as missing
WARNING: atoms too close: (T0376)G199.N and (T0376)D273.N only 0.000 apart, marking (T0376)G199.N as missing
WARNING: atoms too close: (T0376)A170.N and (T0376)D273.N only 0.000 apart, marking (T0376)A170.N as missing
WARNING: atoms too close: (T0376)P169.N and (T0376)D273.N only 0.000 apart, marking (T0376)P169.N as missing
WARNING: atoms too close: (T0376)A127.N and (T0376)D273.N only 0.000 apart, marking (T0376)A127.N as missing
WARNING: atoms too close: (T0376)A119.N and (T0376)D273.N only 0.000 apart, marking (T0376)A119.N as missing
WARNING: atoms too close: (T0376)I5.N and (T0376)D273.N only 0.000 apart, marking (T0376)D273.N as missing
WARNING: atoms too close: (T0376)G272.CA and (T0376)D273.CA only 0.000 apart, marking (T0376)D273.CA as missing
WARNING: atoms too close: (T0376)F254.CA and (T0376)D273.CA only 0.000 apart, marking (T0376)D273.CA as missing
WARNING: atoms too close: (T0376)S253.CA and (T0376)D273.CA only 0.000 apart, marking (T0376)D273.CA as missing
WARNING: atoms too close: (T0376)S252.CA and (T0376)D273.CA only 0.000 apart, marking (T0376)D273.CA as missing
WARNING: atoms too close: (T0376)L251.CA and (T0376)D273.CA only 0.000 apart, marking (T0376)D273.CA as missing
WARNING: atoms too close: (T0376)G199.CA and (T0376)D273.CA only 0.000 apart, marking (T0376)D273.CA as missing
WARNING: atoms too close: (T0376)A170.CA and (T0376)D273.CA only 0.000 apart, marking (T0376)D273.CA as missing
WARNING: atoms too close: (T0376)P169.CA and (T0376)D273.CA only 0.000 apart, marking (T0376)D273.CA as missing
WARNING: atoms too close: (T0376)A127.CA and (T0376)D273.CA only 0.000 apart, marking (T0376)D273.CA as missing
WARNING: atoms too close: (T0376)A119.CA and (T0376)D273.CA only 0.000 apart, marking (T0376)D273.CA as missing
WARNING: atoms too close: (T0376)I5.CA and (T0376)D273.CA only 0.000 apart, marking (T0376)D273.CA as missing
WARNING: atoms too close: (T0376)F254.CB and (T0376)D273.CB only 0.000 apart, marking (T0376)D273.CB as missing
WARNING: atoms too close: (T0376)S253.CB and (T0376)D273.CB only 0.000 apart, marking (T0376)D273.CB as missing
WARNING: atoms too close: (T0376)S252.CB and (T0376)D273.CB only 0.000 apart, marking (T0376)D273.CB as missing
WARNING: atoms too close: (T0376)L251.CB and (T0376)D273.CB only 0.000 apart, marking (T0376)D273.CB as missing
WARNING: atoms too close: (T0376)A170.CB and (T0376)D273.CB only 0.000 apart, marking (T0376)D273.CB as missing
WARNING: atoms too close: (T0376)P169.CB and (T0376)D273.CB only 0.000 apart, marking (T0376)D273.CB as missing
WARNING: atoms too close: (T0376)A127.CB and (T0376)D273.CB only 0.000 apart, marking (T0376)D273.CB as missing
WARNING: atoms too close: (T0376)A119.CB and (T0376)D273.CB only 0.000 apart, marking (T0376)D273.CB as missing
WARNING: atoms too close: (T0376)I5.CB and (T0376)D273.CB only 0.000 apart, marking (T0376)D273.CB as missing
WARNING: atoms too close: (T0376)F254.CG and (T0376)D273.CG only 0.000 apart, marking (T0376)D273.CG as missing
WARNING: atoms too close: (T0376)L251.CG and (T0376)D273.CG only 0.000 apart, marking (T0376)D273.CG as missing
WARNING: atoms too close: (T0376)I5.CG1 and (T0376)D273.CG only 0.000 apart, marking (T0376)D273.CG as missing
WARNING: atoms too close: (T0376)G272.O and (T0376)D273.O only 0.000 apart, marking (T0376)D273.O as missing
WARNING: atoms too close: (T0376)F254.O and (T0376)D273.O only 0.000 apart, marking (T0376)D273.O as missing
WARNING: atoms too close: (T0376)S253.O and (T0376)D273.O only 0.000 apart, marking (T0376)D273.O as missing
WARNING: atoms too close: (T0376)S252.O and (T0376)D273.O only 0.000 apart, marking (T0376)D273.O as missing
WARNING: atoms too close: (T0376)L251.O and (T0376)D273.O only 0.000 apart, marking (T0376)D273.O as missing
WARNING: atoms too close: (T0376)G199.O and (T0376)D273.O only 0.000 apart, marking (T0376)D273.O as missing
WARNING: atoms too close: (T0376)A170.O and (T0376)D273.O only 0.000 apart, marking (T0376)D273.O as missing
WARNING: atoms too close: (T0376)P169.O and (T0376)D273.O only 0.000 apart, marking (T0376)D273.O as missing
WARNING: atoms too close: (T0376)A127.O and (T0376)D273.O only 0.000 apart, marking (T0376)D273.O as missing
WARNING: atoms too close: (T0376)A119.O and (T0376)D273.O only 0.000 apart, marking (T0376)D273.O as missing
WARNING: atoms too close: (T0376)I5.O and (T0376)D273.O only 0.000 apart, marking (T0376)D273.O as missing
WARNING: atoms too close: (T0376)G272.C and (T0376)D273.C only 0.000 apart, marking (T0376)D273.C as missing
WARNING: atoms too close: (T0376)F254.C and (T0376)D273.C only 0.000 apart, marking (T0376)D273.C as missing
WARNING: atoms too close: (T0376)S253.C and (T0376)D273.C only 0.000 apart, marking (T0376)D273.C as missing
WARNING: atoms too close: (T0376)S252.C and (T0376)D273.C only 0.000 apart, marking (T0376)D273.C as missing
WARNING: atoms too close: (T0376)L251.C and (T0376)D273.C only 0.000 apart, marking (T0376)D273.C as missing
WARNING: atoms too close: (T0376)G199.C and (T0376)D273.C only 0.000 apart, marking (T0376)D273.C as missing
WARNING: atoms too close: (T0376)A170.C and (T0376)D273.C only 0.000 apart, marking (T0376)D273.C as missing
WARNING: atoms too close: (T0376)P169.C and (T0376)D273.C only 0.000 apart, marking (T0376)D273.C as missing
WARNING: atoms too close: (T0376)A127.C and (T0376)D273.C only 0.000 apart, marking (T0376)D273.C as missing
WARNING: atoms too close: (T0376)A119.C and (T0376)D273.C only 0.000 apart, marking (T0376)D273.C as missing
WARNING: atoms too close: (T0376)I5.C and (T0376)D273.C only 0.000 apart, marking (T0376)D273.C as missing
WARNING: atoms too close: (T0376)D273.N and (T0376)E282.N only 0.000 apart, marking (T0376)D273.N as missing
WARNING: atoms too close: (T0376)G272.N and (T0376)E282.N only 0.000 apart, marking (T0376)G272.N as missing
WARNING: atoms too close: (T0376)F254.N and (T0376)E282.N only 0.000 apart, marking (T0376)F254.N as missing
WARNING: atoms too close: (T0376)S253.N and (T0376)E282.N only 0.000 apart, marking (T0376)S253.N as missing
WARNING: atoms too close: (T0376)S252.N and (T0376)E282.N only 0.000 apart, marking (T0376)S252.N as missing
WARNING: atoms too close: (T0376)L251.N and (T0376)E282.N only 0.000 apart, marking (T0376)L251.N as missing
WARNING: atoms too close: (T0376)G199.N and (T0376)E282.N only 0.000 apart, marking (T0376)G199.N as missing
WARNING: atoms too close: (T0376)A170.N and (T0376)E282.N only 0.000 apart, marking (T0376)A170.N as missing
WARNING: atoms too close: (T0376)P169.N and (T0376)E282.N only 0.000 apart, marking (T0376)P169.N as missing
WARNING: atoms too close: (T0376)A127.N and (T0376)E282.N only 0.000 apart, marking (T0376)A127.N as missing
WARNING: atoms too close: (T0376)A119.N and (T0376)E282.N only 0.000 apart, marking (T0376)A119.N as missing
WARNING: atoms too close: (T0376)I5.N and (T0376)E282.N only 0.000 apart, marking (T0376)E282.N as missing
WARNING: atoms too close: (T0376)D273.CA and (T0376)E282.CA only 0.000 apart, marking (T0376)E282.CA as missing
WARNING: atoms too close: (T0376)G272.CA and (T0376)E282.CA only 0.000 apart, marking (T0376)E282.CA as missing
WARNING: atoms too close: (T0376)F254.CA and (T0376)E282.CA only 0.000 apart, marking (T0376)E282.CA as missing
WARNING: atoms too close: (T0376)S253.CA and (T0376)E282.CA only 0.000 apart, marking (T0376)E282.CA as missing
WARNING: atoms too close: (T0376)S252.CA and (T0376)E282.CA only 0.000 apart, marking (T0376)E282.CA as missing
WARNING: atoms too close: (T0376)L251.CA and (T0376)E282.CA only 0.000 apart, marking (T0376)E282.CA as missing
WARNING: atoms too close: (T0376)G199.CA and (T0376)E282.CA only 0.000 apart, marking (T0376)E282.CA as missing
WARNING: atoms too close: (T0376)A170.CA and (T0376)E282.CA only 0.000 apart, marking (T0376)E282.CA as missing
WARNING: atoms too close: (T0376)P169.CA and (T0376)E282.CA only 0.000 apart, marking (T0376)E282.CA as missing
WARNING: atoms too close: (T0376)A127.CA and (T0376)E282.CA only 0.000 apart, marking (T0376)E282.CA as missing
WARNING: atoms too close: (T0376)A119.CA and (T0376)E282.CA only 0.000 apart, marking (T0376)E282.CA as missing
WARNING: atoms too close: (T0376)I5.CA and (T0376)E282.CA only 0.000 apart, marking (T0376)E282.CA as missing
WARNING: atoms too close: (T0376)D273.CB and (T0376)E282.CB only 0.000 apart, marking (T0376)E282.CB as missing
WARNING: atoms too close: (T0376)F254.CB and (T0376)E282.CB only 0.000 apart, marking (T0376)E282.CB as missing
WARNING: atoms too close: (T0376)S253.CB and (T0376)E282.CB only 0.000 apart, marking (T0376)E282.CB as missing
WARNING: atoms too close: (T0376)S252.CB and (T0376)E282.CB only 0.000 apart, marking (T0376)E282.CB as missing
WARNING: atoms too close: (T0376)L251.CB and (T0376)E282.CB only 0.000 apart, marking (T0376)E282.CB as missing
WARNING: atoms too close: (T0376)A170.CB and (T0376)E282.CB only 0.000 apart, marking (T0376)E282.CB as missing
WARNING: atoms too close: (T0376)P169.CB and (T0376)E282.CB only 0.000 apart, marking (T0376)E282.CB as missing
WARNING: atoms too close: (T0376)A127.CB and (T0376)E282.CB only 0.000 apart, marking (T0376)E282.CB as missing
WARNING: atoms too close: (T0376)A119.CB and (T0376)E282.CB only 0.000 apart, marking (T0376)E282.CB as missing
WARNING: atoms too close: (T0376)I5.CB and (T0376)E282.CB only 0.000 apart, marking (T0376)E282.CB as missing
WARNING: atoms too close: (T0376)D273.CG and (T0376)E282.CG only 0.000 apart, marking (T0376)E282.CG as missing
WARNING: atoms too close: (T0376)F254.CG and (T0376)E282.CG only 0.000 apart, marking (T0376)E282.CG as missing
WARNING: atoms too close: (T0376)L251.CG and (T0376)E282.CG only 0.000 apart, marking (T0376)E282.CG as missing
WARNING: atoms too close: (T0376)I5.CG1 and (T0376)E282.CG only 0.000 apart, marking (T0376)E282.CG as missing
WARNING: atoms too close: (T0376)D273.O and (T0376)E282.O only 0.000 apart, marking (T0376)E282.O as missing
WARNING: atoms too close: (T0376)G272.O and (T0376)E282.O only 0.000 apart, marking (T0376)E282.O as missing
WARNING: atoms too close: (T0376)F254.O and (T0376)E282.O only 0.000 apart, marking (T0376)E282.O as missing
WARNING: atoms too close: (T0376)S253.O and (T0376)E282.O only 0.000 apart, marking (T0376)E282.O as missing
WARNING: atoms too close: (T0376)S252.O and (T0376)E282.O only 0.000 apart, marking (T0376)E282.O as missing
WARNING: atoms too close: (T0376)L251.O and (T0376)E282.O only 0.000 apart, marking (T0376)E282.O as missing
WARNING: atoms too close: (T0376)G199.O and (T0376)E282.O only 0.000 apart, marking (T0376)E282.O as missing
WARNING: atoms too close: (T0376)A170.O and (T0376)E282.O only 0.000 apart, marking (T0376)E282.O as missing
WARNING: atoms too close: (T0376)P169.O and (T0376)E282.O only 0.000 apart, marking (T0376)E282.O as missing
WARNING: atoms too close: (T0376)A127.O and (T0376)E282.O only 0.000 apart, marking (T0376)E282.O as missing
WARNING: atoms too close: (T0376)A119.O and (T0376)E282.O only 0.000 apart, marking (T0376)E282.O as missing
WARNING: atoms too close: (T0376)I5.O and (T0376)E282.O only 0.000 apart, marking (T0376)E282.O as missing
WARNING: atoms too close: (T0376)D273.C and (T0376)E282.C only 0.000 apart, marking (T0376)E282.C as missing
WARNING: atoms too close: (T0376)G272.C and (T0376)E282.C only 0.000 apart, marking (T0376)E282.C as missing
WARNING: atoms too close: (T0376)F254.C and (T0376)E282.C only 0.000 apart, marking (T0376)E282.C as missing
WARNING: atoms too close: (T0376)S253.C and (T0376)E282.C only 0.000 apart, marking (T0376)E282.C as missing
WARNING: atoms too close: (T0376)S252.C and (T0376)E282.C only 0.000 apart, marking (T0376)E282.C as missing
WARNING: atoms too close: (T0376)L251.C and (T0376)E282.C only 0.000 apart, marking (T0376)E282.C as missing
WARNING: atoms too close: (T0376)G199.C and (T0376)E282.C only 0.000 apart, marking (T0376)E282.C as missing
WARNING: atoms too close: (T0376)A170.C and (T0376)E282.C only 0.000 apart, marking (T0376)E282.C as missing
WARNING: atoms too close: (T0376)P169.C and (T0376)E282.C only 0.000 apart, marking (T0376)E282.C as missing
WARNING: atoms too close: (T0376)A127.C and (T0376)E282.C only 0.000 apart, marking (T0376)E282.C as missing
WARNING: atoms too close: (T0376)A119.C and (T0376)E282.C only 0.000 apart, marking (T0376)E282.C as missing
WARNING: atoms too close: (T0376)I5.C and (T0376)E282.C only 0.000 apart, marking (T0376)E282.C as missing
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation panther2_TS1
# ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0376 can't currently be optimized by undertaker
# naming current conformation shub_TS1
# command:Using radius: 8.0000
Metaserver mode
NUMB_ALIGNS: 257
model score -0.2457
model score -0.2550
model score -0.2369
model score -0.2163
model score -0.1912
model score -0.2837
model score -0.2819
model score -0.2299
model score -0.2351
model score -0.2305
model score -0.2611
model score -0.2477
model score -0.2298
model score -0.2489
model score -0.2183
model score -0.3852
model score -0.3985
model score -0.3643
model score -0.3613
model score -0.3568
model score -0.4225
model score -0.3860
model score -0.3828
model score -0.3517
model score -0.3513
model score -0.3551
model score -0.3819
model score -0.3820
model score -0.3152
model score -0.3832
model score -0.2937
model score -0.1902
model score -0.3912
model score -0.3070
model score -0.3671
model score -0.3732
model score -0.2523
model score 1.2672
model score 1.2687
model score 1.2661
model score 1.2683
model score 1.2713
model score -0.3270
model score -0.3253
model score -0.3554
model score -0.3578
model score -0.3360
model score -0.3021
model score -0.3819
model score -0.3820
model score -0.3689
model score -0.2937
model score -0.4080
model score -0.3830
model score -0.3125
model score -0.3230
model score -0.3164
model score 1.2641
model score 1.2637
model score 1.2650
model score 1.2649
model score 1.2854
model score 1.2641
model score 1.2650
model score 1.2649
model score 1.2637
model score 1.2813
model score 2.4591
model score 2.1958
model score 2.3682
model score 2.3636
model score 2.1682
model score -0.3876
model score 1.8720
model score 1.1437
model score 1.1225
model score 1.8341
model score 1.2647
model score 1.2780
model score 1.2707
model score 1.2691
model score 1.2813
model score -0.2934
model score -0.2910
model score -0.3205
model score -0.3266
model score -0.3689
model score -0.2780
model score -0.2297
model score 0.0578
model score 1.7133
model score 1.8436
model score -0.3233
model score -0.3882
model score -0.3632
model score -0.2491
model score -0.3684
model score -0.4297
model score -0.4133
model score -0.3436
model score -0.2861
model score -0.3010
model score -0.3499
model score -0.0094
model score -0.3205
model score -0.3890
model score -0.2995
model score -0.2364
model score -0.2450
model score -0.3563
model score -0.3680
model score -0.3974
model score -0.3924
model score -0.3806
model score -0.3680
model score -0.3570
model score -0.4059
model score -0.3974
model score -0.3472
model score -0.4102
model score -0.3882
model score -0.3907
model score -0.4118
model score -0.3817
model score -0.4171
model score -0.1636
model score -0.1838
model score -0.1515
model score -0.1594
model score -0.1753
model score -0.3363
model score -0.1782
model score -0.1861
model score -0.2043
model score -0.1720
model score -0.3791
model score -0.3949
model score -0.3514
model score -0.3758
model score -0.4005
model score -0.3858
model score -0.3728
model score -0.3727
model score -0.3787
model score -0.3603
model score -0.3721
model score 0.1093
model score -0.3526
model score -0.4109
model score -0.2452
model score -0.2977
model score -0.3720
model score -0.3633
model score -0.3101
model score -0.3996
model score -0.2489
model score -0.3550
model score -0.3276
model score -0.3319
model score -0.3012
model score -0.3203
model score -0.4009
model score -0.3707
model score -0.3512
model score -0.3396
model score -0.3669
model score -0.2977
model score -0.2987
model score -0.3703
model score -0.3526
model score -0.2554
model score -0.3619
model score -0.3386
model score -0.3646
model score -0.3544
model score -0.3561
model score 1.2657
model score 1.2656
model score 1.2658
model score 1.2655
model score 1.2655
model score 1.2651
model score 1.2650
model score 1.2651
model score 1.2648
model score 1.2652
model score -0.2039
model score -0.1575
model score -0.0265
model score 0.2473
model score 0.0779
model score -0.4125
model score -0.4033
model score -0.3305
model score -0.3883
model score -0.4108
model score -0.4156
model score -0.3976
model score -0.4185
model score -0.3305
model score -0.3840
model score -0.4171
model score -0.3689
model score -0.3683
model score -0.2947
model score -0.4215
model score 1.2642
model score 1.2643
model score 1.2651
model score 1.2647
model score 1.2641
model score -0.3575
model score 1.2642
model score 1.2643
model score 1.2651
model score 1.2647
model score 1.2641
model score -0.4130
model score -0.4083
model score -0.4096
model score -0.4167
model score -0.2338
model score -0.3696
model score -0.3433
model score 1.2650
model score 1.2642
model score 1.2649
model score 1.2723
model score 1.2792
model score -0.1545
model score -0.1632
model score -0.1602
model score -0.1770
model score -0.1912
model score 2.1338
model score 2.3145
model score 2.0567
model score 2.4519
model score 2.2073
model score -0.4085
model score -0.2946
model score -0.3743
model score -0.2711
model score 0.3747
model score -0.3387
model score -0.3337
model score -0.3127
model score -0.3204
model score -0.2765
model score -0.3356
model score -0.3961
model score -0.2489
model score -0.2955
model score -0.1522
model score 1.5489
model score -0.3398
model score -0.3687
weight: 0.9427 eval: -0.2457 min: -0.4297 max: 2.4591
weight: 0.9456 eval: -0.2550 min: -0.4297 max: 2.4591
weight: 0.9399 eval: -0.2369 min: -0.4297 max: 2.4591
weight: 0.9335 eval: -0.2163 min: -0.4297 max: 2.4591
weight: 0.9257 eval: -0.1912 min: -0.4297 max: 2.4591
weight: 0.9545 eval: -0.2837 min: -0.4297 max: 2.4591
weight: 0.9539 eval: -0.2819 min: -0.4297 max: 2.4591
weight: 0.9378 eval: -0.2299 min: -0.4297 max: 2.4591
weight: 0.9394 eval: -0.2351 min: -0.4297 max: 2.4591
weight: 0.9379 eval: -0.2305 min: -0.4297 max: 2.4591
weight: 0.9475 eval: -0.2611 min: -0.4297 max: 2.4591
weight: 0.9433 eval: -0.2477 min: -0.4297 max: 2.4591
weight: 0.9377 eval: -0.2298 min: -0.4297 max: 2.4591
weight: 0.9437 eval: -0.2489 min: -0.4297 max: 2.4591
weight: 0.9341 eval: -0.2183 min: -0.4297 max: 2.4591
weight: 0.9861 eval: -0.3852 min: -0.4297 max: 2.4591
weight: 0.9903 eval: -0.3985 min: -0.4297 max: 2.4591
weight: 0.9796 eval: -0.3643 min: -0.4297 max: 2.4591
weight: 0.9787 eval: -0.3613 min: -0.4297 max: 2.4591
weight: 0.9773 eval: -0.3568 min: -0.4297 max: 2.4591
weight: 0.9978 eval: -0.4225 min: -0.4297 max: 2.4591
weight: 0.9864 eval: -0.3860 min: -0.4297 max: 2.4591
weight: 0.9854 eval: -0.3828 min: -0.4297 max: 2.4591
weight: 0.9757 eval: -0.3517 min: -0.4297 max: 2.4591
weight: 0.9756 eval: -0.3513 min: -0.4297 max: 2.4591
weight: 0.9767 eval: -0.3551 min: -0.4297 max: 2.4591
weight: 0.9851 eval: -0.3819 min: -0.4297 max: 2.4591
weight: 0.9851 eval: -0.3820 min: -0.4297 max: 2.4591
weight: 0.9643 eval: -0.3152 min: -0.4297 max: 2.4591
weight: 0.9855 eval: -0.3832 min: -0.4297 max: 2.4591
weight: 0.9576 eval: -0.2937 min: -0.4297 max: 2.4591
weight: 0.9254 eval: -0.1902 min: -0.4297 max: 2.4591
weight: 0.9880 eval: -0.3912 min: -0.4297 max: 2.4591
weight: 0.9618 eval: -0.3070 min: -0.4297 max: 2.4591
weight: 0.9805 eval: -0.3671 min: -0.4297 max: 2.4591
weight: 0.9824 eval: -0.3732 min: -0.4297 max: 2.4591
weight: 0.9447 eval: -0.2523 min: -0.4297 max: 2.4591
weight: 0.4713 eval: 1.2672 min: -0.4297 max: 2.4591
weight: 0.4709 eval: 1.2687 min: -0.4297 max: 2.4591
weight: 0.4717 eval: 1.2661 min: -0.4297 max: 2.4591
weight: 0.4710 eval: 1.2683 min: -0.4297 max: 2.4591
weight: 0.4701 eval: 1.2713 min: -0.4297 max: 2.4591
weight: 0.9680 eval: -0.3270 min: -0.4297 max: 2.4591
weight: 0.9675 eval: -0.3253 min: -0.4297 max: 2.4591
weight: 0.9768 eval: -0.3554 min: -0.4297 max: 2.4591
weight: 0.9776 eval: -0.3578 min: -0.4297 max: 2.4591
weight: 0.9708 eval: -0.3360 min: -0.4297 max: 2.4591
weight: 0.9602 eval: -0.3021 min: -0.4297 max: 2.4591
weight: 0.9851 eval: -0.3819 min: -0.4297 max: 2.4591
weight: 0.9851 eval: -0.3820 min: -0.4297 max: 2.4591
weight: 0.9810 eval: -0.3689 min: -0.4297 max: 2.4591
weight: 0.9576 eval: -0.2937 min: -0.4297 max: 2.4591
weight: 0.9932 eval: -0.4080 min: -0.4297 max: 2.4591
weight: 0.9855 eval: -0.3830 min: -0.4297 max: 2.4591
weight: 0.9635 eval: -0.3125 min: -0.4297 max: 2.4591
weight: 0.9667 eval: -0.3230 min: -0.4297 max: 2.4591
weight: 0.9647 eval: -0.3164 min: -0.4297 max: 2.4591
weight: 0.4723 eval: 1.2641 min: -0.4297 max: 2.4591
weight: 0.4724 eval: 1.2637 min: -0.4297 max: 2.4591
weight: 0.4720 eval: 1.2650 min: -0.4297 max: 2.4591
weight: 0.4720 eval: 1.2649 min: -0.4297 max: 2.4591
weight: 0.4657 eval: 1.2854 min: -0.4297 max: 2.4591
weight: 0.4723 eval: 1.2641 min: -0.4297 max: 2.4591
weight: 0.4720 eval: 1.2650 min: -0.4297 max: 2.4591
weight: 0.4720 eval: 1.2649 min: -0.4297 max: 2.4591
weight: 0.4724 eval: 1.2637 min: -0.4297 max: 2.4591
weight: 0.4669 eval: 1.2813 min: -0.4297 max: 2.4591
weight: 0.1000 eval: 2.4591 min: -0.4297 max: 2.4591
weight: 0.1820 eval: 2.1958 min: -0.4297 max: 2.4591
weight: 0.1283 eval: 2.3682 min: -0.4297 max: 2.4591
weight: 0.1297 eval: 2.3636 min: -0.4297 max: 2.4591
weight: 0.1906 eval: 2.1682 min: -0.4297 max: 2.4591
weight: 0.9869 eval: -0.3876 min: -0.4297 max: 2.4591
weight: 0.2829 eval: 1.8720 min: -0.4297 max: 2.4591
weight: 0.5098 eval: 1.1437 min: -0.4297 max: 2.4591
weight: 0.5164 eval: 1.1225 min: -0.4297 max: 2.4591
weight: 0.2947 eval: 1.8341 min: -0.4297 max: 2.4591
weight: 0.4721 eval: 1.2647 min: -0.4297 max: 2.4591
weight: 0.4680 eval: 1.2780 min: -0.4297 max: 2.4591
weight: 0.4703 eval: 1.2707 min: -0.4297 max: 2.4591
weight: 0.4707 eval: 1.2691 min: -0.4297 max: 2.4591
weight: 0.4669 eval: 1.2813 min: -0.4297 max: 2.4591
weight: 0.9575 eval: -0.2934 min: -0.4297 max: 2.4591
weight: 0.9568 eval: -0.2910 min: -0.4297 max: 2.4591
weight: 0.9660 eval: -0.3205 min: -0.4297 max: 2.4591
weight: 0.9679 eval: -0.3266 min: -0.4297 max: 2.4591
weight: 0.9810 eval: -0.3689 min: -0.4297 max: 2.4591
weight: 0.9527 eval: -0.2780 min: -0.4297 max: 2.4591
weight: 0.9377 eval: -0.2297 min: -0.4297 max: 2.4591
weight: 0.8481 eval: 0.0578 min: -0.4297 max: 2.4591
weight: 0.3324 eval: 1.7133 min: -0.4297 max: 2.4591
weight: 0.2918 eval: 1.8436 min: -0.4297 max: 2.4591
weight: 0.9668 eval: -0.3233 min: -0.4297 max: 2.4591
weight: 0.9871 eval: -0.3882 min: -0.4297 max: 2.4591
weight: 0.9793 eval: -0.3632 min: -0.4297 max: 2.4591
weight: 0.9437 eval: -0.2491 min: -0.4297 max: 2.4591
weight: 0.9809 eval: -0.3684 min: -0.4297 max: 2.4591
weight: 1.0000 eval: -0.4297 min: -0.4297 max: 2.4591
weight: 0.9949 eval: -0.4133 min: -0.4297 max: 2.4591
weight: 0.9732 eval: -0.3436 min: -0.4297 max: 2.4591
weight: 0.9553 eval: -0.2861 min: -0.4297 max: 2.4591
weight: 0.9599 eval: -0.3010 min: -0.4297 max: 2.4591
weight: 0.9751 eval: -0.3499 min: -0.4297 max: 2.4591
weight: 0.8690 eval: -0.0094 min: -0.4297 max: 2.4591
weight: 0.9660 eval: -0.3205 min: -0.4297 max: 2.4591
weight: 0.9873 eval: -0.3890 min: -0.4297 max: 2.4591
weight: 0.9594 eval: -0.2995 min: -0.4297 max: 2.4591
weight: 0.9398 eval: -0.2364 min: -0.4297 max: 2.4591
weight: 0.9424 eval: -0.2450 min: -0.4297 max: 2.4591
weight: 0.9771 eval: -0.3563 min: -0.4297 max: 2.4591
weight: 0.9808 eval: -0.3680 min: -0.4297 max: 2.4591
weight: 0.9899 eval: -0.3974 min: -0.4297 max: 2.4591
weight: 0.9884 eval: -0.3924 min: -0.4297 max: 2.4591
weight: 0.9847 eval: -0.3806 min: -0.4297 max: 2.4591
weight: 0.9808 eval: -0.3680 min: -0.4297 max: 2.4591
weight: 0.9773 eval: -0.3570 min: -0.4297 max: 2.4591
weight: 0.9926 eval: -0.4059 min: -0.4297 max: 2.4591
weight: 0.9899 eval: -0.3974 min: -0.4297 max: 2.4591
weight: 0.9743 eval: -0.3472 min: -0.4297 max: 2.4591
weight: 0.9939 eval: -0.4102 min: -0.4297 max: 2.4591
weight: 0.9871 eval: -0.3882 min: -0.4297 max: 2.4591
weight: 0.9878 eval: -0.3907 min: -0.4297 max: 2.4591
weight: 0.9944 eval: -0.4118 min: -0.4297 max: 2.4591
weight: 0.9850 eval: -0.3817 min: -0.4297 max: 2.4591
weight: 0.9961 eval: -0.4171 min: -0.4297 max: 2.4591
weight: 0.9171 eval: -0.1636 min: -0.4297 max: 2.4591
weight: 0.9234 eval: -0.1838 min: -0.4297 max: 2.4591
weight: 0.9133 eval: -0.1515 min: -0.4297 max: 2.4591
weight: 0.9158 eval: -0.1594 min: -0.4297 max: 2.4591
weight: 0.9207 eval: -0.1753 min: -0.4297 max: 2.4591
weight: 0.9709 eval: -0.3363 min: -0.4297 max: 2.4591
weight: 0.9216 eval: -0.1782 min: -0.4297 max: 2.4591
weight: 0.9241 eval: -0.1861 min: -0.4297 max: 2.4591
weight: 0.9298 eval: -0.2043 min: -0.4297 max: 2.4591
weight: 0.9197 eval: -0.1720 min: -0.4297 max: 2.4591
weight: 0.9842 eval: -0.3791 min: -0.4297 max: 2.4591
weight: 0.9892 eval: -0.3949 min: -0.4297 max: 2.4591
weight: 0.9756 eval: -0.3514 min: -0.4297 max: 2.4591
weight: 0.9832 eval: -0.3758 min: -0.4297 max: 2.4591
weight: 0.9909 eval: -0.4005 min: -0.4297 max: 2.4591
weight: 0.9863 eval: -0.3858 min: -0.4297 max: 2.4591
weight: 0.9823 eval: -0.3728 min: -0.4297 max: 2.4591
weight: 0.9822 eval: -0.3727 min: -0.4297 max: 2.4591
weight: 0.9841 eval: -0.3787 min: -0.4297 max: 2.4591
weight: 0.9784 eval: -0.3603 min: -0.4297 max: 2.4591
weight: 0.9821 eval: -0.3721 min: -0.4297 max: 2.4591
weight: 0.8321 eval: 0.1093 min: -0.4297 max: 2.4591
weight: 0.9760 eval: -0.3526 min: -0.4297 max: 2.4591
weight: 0.9941 eval: -0.4109 min: -0.4297 max: 2.4591
weight: 0.9425 eval: -0.2452 min: -0.4297 max: 2.4591
weight: 0.9589 eval: -0.2977 min: -0.4297 max: 2.4591
weight: 0.9820 eval: -0.3720 min: -0.4297 max: 2.4591
weight: 0.9793 eval: -0.3633 min: -0.4297 max: 2.4591
weight: 0.9627 eval: -0.3101 min: -0.4297 max: 2.4591
weight: 0.9906 eval: -0.3996 min: -0.4297 max: 2.4591
weight: 0.9437 eval: -0.2489 min: -0.4297 max: 2.4591
weight: 0.9767 eval: -0.3550 min: -0.4297 max: 2.4591
weight: 0.9682 eval: -0.3276 min: -0.4297 max: 2.4591
weight: 0.9695 eval: -0.3319 min: -0.4297 max: 2.4591
weight: 0.9600 eval: -0.3012 min: -0.4297 max: 2.4591
weight: 0.9659 eval: -0.3203 min: -0.4297 max: 2.4591
weight: 0.9910 eval: -0.4009 min: -0.4297 max: 2.4591
weight: 0.9816 eval: -0.3707 min: -0.4297 max: 2.4591
weight: 0.9755 eval: -0.3512 min: -0.4297 max: 2.4591
weight: 0.9719 eval: -0.3396 min: -0.4297 max: 2.4591
weight: 0.9804 eval: -0.3669 min: -0.4297 max: 2.4591
weight: 0.9589 eval: -0.2977 min: -0.4297 max: 2.4591
weight: 0.9592 eval: -0.2987 min: -0.4297 max: 2.4591
weight: 0.9815 eval: -0.3703 min: -0.4297 max: 2.4591
weight: 0.9760 eval: -0.3526 min: -0.4297 max: 2.4591
weight: 0.9457 eval: -0.2554 min: -0.4297 max: 2.4591
weight: 0.9789 eval: -0.3619 min: -0.4297 max: 2.4591
weight: 0.9716 eval: -0.3386 min: -0.4297 max: 2.4591
weight: 0.9797 eval: -0.3646 min: -0.4297 max: 2.4591
weight: 0.9765 eval: -0.3544 min: -0.4297 max: 2.4591
weight: 0.9771 eval: -0.3561 min: -0.4297 max: 2.4591
weight: 0.4718 eval: 1.2657 min: -0.4297 max: 2.4591
weight: 0.4718 eval: 1.2656 min: -0.4297 max: 2.4591
weight: 0.4718 eval: 1.2658 min: -0.4297 max: 2.4591
weight: 0.4719 eval: 1.2655 min: -0.4297 max: 2.4591
weight: 0.4719 eval: 1.2655 min: -0.4297 max: 2.4591
weight: 0.4720 eval: 1.2651 min: -0.4297 max: 2.4591
weight: 0.4720 eval: 1.2650 min: -0.4297 max: 2.4591
weight: 0.4720 eval: 1.2651 min: -0.4297 max: 2.4591
weight: 0.4721 eval: 1.2648 min: -0.4297 max: 2.4591
weight: 0.4719 eval: 1.2652 min: -0.4297 max: 2.4591
weight: 0.9296 eval: -0.2039 min: -0.4297 max: 2.4591
weight: 0.9152 eval: -0.1575 min: -0.4297 max: 2.4591
weight: 0.8744 eval: -0.0265 min: -0.4297 max: 2.4591
weight: 0.7891 eval: 0.2473 min: -0.4297 max: 2.4591
weight: 0.8418 eval: 0.0779 min: -0.4297 max: 2.4591
weight: 0.9946 eval: -0.4125 min: -0.4297 max: 2.4591
weight: 0.9918 eval: -0.4033 min: -0.4297 max: 2.4591
weight: 0.9691 eval: -0.3305 min: -0.4297 max: 2.4591
weight: 0.9871 eval: -0.3883 min: -0.4297 max: 2.4591
weight: 0.9941 eval: -0.4108 min: -0.4297 max: 2.4591
weight: 0.9956 eval: -0.4156 min: -0.4297 max: 2.4591
weight: 0.9900 eval: -0.3976 min: -0.4297 max: 2.4591
weight: 0.9965 eval: -0.4185 min: -0.4297 max: 2.4591
weight: 0.9691 eval: -0.3305 min: -0.4297 max: 2.4591
weight: 0.9858 eval: -0.3840 min: -0.4297 max: 2.4591
weight: 0.9961 eval: -0.4171 min: -0.4297 max: 2.4591
weight: 0.9811 eval: -0.3689 min: -0.4297 max: 2.4591
weight: 0.9809 eval: -0.3683 min: -0.4297 max: 2.4591
weight: 0.9579 eval: -0.2947 min: -0.4297 max: 2.4591
weight: 0.9974 eval: -0.4215 min: -0.4297 max: 2.4591
weight: 0.4723 eval: 1.2642 min: -0.4297 max: 2.4591
weight: 0.4722 eval: 1.2643 min: -0.4297 max: 2.4591
weight: 0.4720 eval: 1.2651 min: -0.4297 max: 2.4591
weight: 0.4721 eval: 1.2647 min: -0.4297 max: 2.4591
weight: 0.4723 eval: 1.2641 min: -0.4297 max: 2.4591
weight: 0.9775 eval: -0.3575 min: -0.4297 max: 2.4591
weight: 0.4723 eval: 1.2642 min: -0.4297 max: 2.4591
weight: 0.4722 eval: 1.2643 min: -0.4297 max: 2.4591
weight: 0.4720 eval: 1.2651 min: -0.4297 max: 2.4591
weight: 0.4721 eval: 1.2647 min: -0.4297 max: 2.4591
weight: 0.4723 eval: 1.2641 min: -0.4297 max: 2.4591
weight: 0.9948 eval: -0.4130 min: -0.4297 max: 2.4591
weight: 0.9933 eval: -0.4083 min: -0.4297 max: 2.4591
weight: 0.9937 eval: -0.4096 min: -0.4297 max: 2.4591
weight: 0.9959 eval: -0.4167 min: -0.4297 max: 2.4591
weight: 0.9390 eval: -0.2338 min: -0.4297 max: 2.4591
weight: 0.9813 eval: -0.3696 min: -0.4297 max: 2.4591
weight: 0.9731 eval: -0.3433 min: -0.4297 max: 2.4591
weight: 0.4720 eval: 1.2650 min: -0.4297 max: 2.4591
weight: 0.4723 eval: 1.2642 min: -0.4297 max: 2.4591
weight: 0.4720 eval: 1.2649 min: -0.4297 max: 2.4591
weight: 0.4697 eval: 1.2723 min: -0.4297 max: 2.4591
weight: 0.4676 eval: 1.2792 min: -0.4297 max: 2.4591
weight: 0.9143 eval: -0.1545 min: -0.4297 max: 2.4591
weight: 0.9170 eval: -0.1632 min: -0.4297 max: 2.4591
weight: 0.9160 eval: -0.1602 min: -0.4297 max: 2.4591
weight: 0.9213 eval: -0.1770 min: -0.4297 max: 2.4591
weight: 0.9257 eval: -0.1912 min: -0.4297 max: 2.4591
weight: 0.2013 eval: 2.1338 min: -0.4297 max: 2.4591
weight: 0.1450 eval: 2.3145 min: -0.4297 max: 2.4591
weight: 0.2254 eval: 2.0567 min: -0.4297 max: 2.4591
weight: 0.1022 eval: 2.4519 min: -0.4297 max: 2.4591
weight: 0.1784 eval: 2.2073 min: -0.4297 max: 2.4591
weight: 0.9934 eval: -0.4085 min: -0.4297 max: 2.4591
weight: 0.9579 eval: -0.2946 min: -0.4297 max: 2.4591
weight: 0.9827 eval: -0.3743 min: -0.4297 max: 2.4591
weight: 0.9506 eval: -0.2711 min: -0.4297 max: 2.4591
weight: 0.7494 eval: 0.3747 min: -0.4297 max: 2.4591
weight: 0.9717 eval: -0.3387 min: -0.4297 max: 2.4591
weight: 0.9701 eval: -0.3337 min: -0.4297 max: 2.4591
weight: 0.9635 eval: -0.3127 min: -0.4297 max: 2.4591
weight: 0.9659 eval: -0.3204 min: -0.4297 max: 2.4591
weight: 0.9523 eval: -0.2765 min: -0.4297 max: 2.4591
weight: 0.9707 eval: -0.3356 min: -0.4297 max: 2.4591
weight: 0.9895 eval: -0.3961 min: -0.4297 max: 2.4591
weight: 0.9437 eval: -0.2489 min: -0.4297 max: 2.4591
weight: 0.9582 eval: -0.2955 min: -0.4297 max: 2.4591
weight: 0.9135 eval: -0.1522 min: -0.4297 max: 2.4591
weight: 0.3836 eval: 1.5489 min: -0.4297 max: 2.4591
weight: 0.9720 eval: -0.3398 min: -0.4297 max: 2.4591
weight: 0.9810 eval: -0.3687 min: -0.4297 max: 2.4591
Adding 11518 constraints to all2.constraints
Done adding distance constraints
# command:Reading probabilities from probabilities.dat
Reading constraints from ConstraintSet all2.constraints
maxweight: 1.0000
Optimizing...
 Probability sum: -545.0790, CN propb: -545.0790 weights: 0.3363 constraints: 1356
# command:Found ConstraintSet
# PrintContacts align.constraints_meta02
Number of constraints in align2.constraints 1356
# command:Found ConstraintSet
# PrintContacts align_bonus.constraints_meta02
Number of constraints in align2.constraints.bonus 1356
# command:Found ConstraintSet
# PrintContacts rejected.constraints_meta02
Number of constraints in rejected2.constraints 10162
# command:Found ConstraintSet
# PrintContacts rejected_bonus.constraints_meta02
Number of constraints in rejected2.constraints.bonus 10162
# command:Found ConstraintSet
# PrintContacts non_contacts.constraints_meta02
Number of constraints in noncontact2.constraints 0
# command:Found ConstraintSet
# PrintContacts non_contacts_bonus.constraints_meta02
Number of constraints in noncontact2.constraints.bonus 0
# command:Found ConstraintSet
# PrintContacts all.constraints_meta02
Number of constraints in all2.constraints 11518
# command: