# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0373/ # command:# Making conformation for sequence T0373 numbered 1 through 147 Created new target T0373 from T0373.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0373/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0373//projects/compbio/experiments/protein-predict/casp7/T0373/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0373//projects/compbio/experiments/protein-predict/casp7/T0373/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0373/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0373/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0373)A57.CB, (T0373)L67.CB) [> 2.9525 = 4.9208 < 6.3971] w=1.0000 to align # Constraint # added constraint: constraint((T0373)P53.CB, (T0373)L67.CB) [> 3.6143 = 6.0238 < 7.8310] w=0.9785 to align # Constraint # added constraint: constraint((T0373)L56.CB, (T0373)L67.CB) [> 3.3702 = 5.6171 < 7.3022] w=0.9784 to align # Constraint # added constraint: constraint((T0373)L71.CB, (T0373)I80.CB) [> 3.8642 = 6.4404 < 8.3725] w=0.9714 to align # Constraint # added constraint: constraint((T0373)P53.CB, (T0373)L71.CB) [> 4.0359 = 6.7265 < 8.7445] w=0.9066 to align # Constraint # added constraint: constraint((T0373)R82.CB, (T0373)V94.CB) [> 3.5168 = 5.8613 < 7.6197] w=0.9064 to align # Constraint # added constraint: constraint((T0373)A43.CB, (T0373)A59.CB) [> 3.6089 = 6.0148 < 7.8192] w=0.9022 to align # Constraint # added constraint: constraint((T0373)Q37.CB, (T0373)L70.CB) [> 3.5035 = 5.8392 < 7.5910] w=0.8994 to align # Constraint # added constraint: constraint((T0373)L71.CB, (T0373)V94.CB) [> 3.8752 = 6.4587 < 8.3963] w=0.8852 to align # Constraint # added constraint: constraint((T0373)V51.CB, (T0373)V94.CB) [> 3.3026 = 5.5043 < 7.1555] w=0.8850 to align # Constraint # added constraint: constraint((T0373)V81.CB, (T0373)S95.CB) [> 3.1515 = 5.2525 < 6.8282] w=0.8705 to align # Constraint # added constraint: constraint((T0373)I80.CB, (T0373)S95.CB) [> 4.1009 = 6.8348 < 8.8852] w=0.8705 to align # Constraint # added constraint: constraint((T0373)I80.CB, (T0373)L96.CB) [> 3.7259 = 6.2098 < 8.0727] w=0.8633 to align # Constraint # added constraint: constraint((T0373)L79.CB, (T0373)L96.CB) [> 4.1815 = 6.9692 < 9.0599] w=0.8632 to align # Constraint # added constraint: constraint((T0373)L79.CB, (T0373)S97.CB) [> 3.5127 = 5.8545 < 7.6108] w=0.8492 to align # Constraint # added constraint: constraint((T0373)G78.CA, (T0373)S97.CB) [> 3.2654 = 5.4422 < 7.0749] w=0.8492 to align # Constraint # added constraint: constraint((T0373)V81.CB, (T0373)V94.CB) [> 4.3916 = 7.3194 < 9.5152] w=0.8489 to align # Constraint # added constraint: constraint((T0373)T52.CB, (T0373)V94.CB) [> 4.3579 = 7.2632 < 9.4422] w=0.8429 to align # Constraint # added constraint: constraint((T0373)A43.CB, (T0373)L56.CB) [> 3.6686 = 6.1143 < 7.9485] w=0.8400 to align # Constraint # added constraint: constraint((T0373)P53.CB, (T0373)A68.CB) [> 3.7840 = 6.3066 < 8.1986] w=0.8294 to align # Constraint # added constraint: constraint((T0373)V81.CB, (T0373)S97.CB) [> 3.4734 = 5.7890 < 7.5258] w=0.8277 to align # Constraint # added constraint: constraint((T0373)V40.CB, (T0373)E60.CB) [> 4.0076 = 6.6793 < 8.6831] w=0.8275 to align # Constraint # added constraint: constraint((T0373)V40.CB, (T0373)L74.CB) [> 4.0499 = 6.7498 < 8.7747] w=0.8256 to align # Constraint # added constraint: constraint((T0373)I80.CB, (T0373)S97.CB) [> 3.8038 = 6.3397 < 8.2416] w=0.8061 to align # Constraint # added constraint: constraint((T0373)V40.CB, (T0373)L70.CB) [> 3.4034 = 5.6723 < 7.3740] w=0.8041 to align # Constraint # added constraint: constraint((T0373)R82.CB, (T0373)R93.CB) [> 4.2069 = 7.0115 < 9.1150] w=0.7908 to align # Constraint # added constraint: constraint((T0373)L41.CB, (T0373)L79.CB) [> 3.9648 = 6.6080 < 8.5904] w=0.7825 to align # Constraint # added constraint: constraint((T0373)V40.CB, (T0373)L71.CB) [> 4.2013 = 7.0021 < 9.1027] w=0.7775 to align # Constraint # added constraint: constraint((T0373)I44.CB, (T0373)V94.CB) [> 3.6825 = 6.1376 < 7.9788] w=0.7735 to align # Constraint # added constraint: constraint((T0373)H83.CB, (T0373)S95.CB) [> 3.8001 = 6.3336 < 8.2337] w=0.7677 to align # Constraint # added constraint: constraint((T0373)L79.CB, (T0373)G100.CA) [> 2.7794 = 4.6323 < 6.0221] w=0.7641 to align # Constraint # added constraint: constraint((T0373)I44.CB, (T0373)I80.CB) [> 4.0164 = 6.6940 < 8.7022] w=0.7541 to align # Constraint # added constraint: constraint((T0373)H83.CB, (T0373)R93.CB) [> 3.2643 = 5.4404 < 7.0725] w=0.7476 to align # Constraint # added constraint: constraint((T0373)V39.CB, (T0373)E60.CB) [> 3.6188 = 6.0313 < 7.8407] w=0.7466 to align # Constraint # added constraint: constraint((T0373)V40.CB, (T0373)L67.CB) [> 4.3315 = 7.2192 < 9.3850] w=0.7464 to align # Constraint # added constraint: constraint((T0373)L41.CB, (T0373)L74.CB) [> 4.2159 = 7.0265 < 9.1345] w=0.7396 to align # Constraint # added constraint: constraint((T0373)L41.CB, (T0373)L96.CB) [> 3.9833 = 6.6388 < 8.6304] w=0.7339 to align # Constraint # added constraint: constraint((T0373)S36.CB, (T0373)L70.CB) [> 3.4786 = 5.7976 < 7.5370] w=0.7325 to align # Constraint # added constraint: constraint((T0373)I44.CB, (T0373)L96.CB) [> 3.1187 = 5.1978 < 6.7571] w=0.7321 to align # Constraint # added constraint: constraint((T0373)L41.CB, (T0373)L104.CB) [> 3.3849 = 5.6414 < 7.3339] w=0.6924 to align # Constraint # added constraint: constraint((T0373)P53.CB, (T0373)S64.CB) [> 3.7895 = 6.3158 < 8.2106] w=0.6910 to align # Constraint # added constraint: constraint((T0373)Q37.CB, (T0373)E73.CB) [> 4.1693 = 6.9488 < 9.0334] w=0.6896 to align # Constraint # added constraint: constraint((T0373)D45.CB, (T0373)L96.CB) [> 3.6678 = 6.1130 < 7.9469] w=0.6883 to align # Constraint # added constraint: constraint((T0373)G78.CA, (T0373)G100.CA) [> 4.3174 = 7.1957 < 9.3544] w=0.6550 to align # Constraint # added constraint: constraint((T0373)L79.CB, (T0373)E99.CB) [> 3.5801 = 5.9668 < 7.7568] w=0.6549 to align # Constraint # added constraint: constraint((T0373)G78.CA, (T0373)E99.CB) [> 3.4720 = 5.7867 < 7.5228] w=0.6549 to align # Constraint # added constraint: constraint((T0373)I44.CB, (T0373)S95.CB) [> 3.9893 = 6.6489 < 8.6435] w=0.6326 to align # Constraint # added constraint: constraint((T0373)S54.CB, (T0373)S64.CB) [> 3.9810 = 6.6351 < 8.6256] w=0.6284 to align # Constraint # added constraint: constraint((T0373)R82.CB, (T0373)S95.CB) [> 4.5094 = 7.5157 < 9.7704] w=0.6280 to align # Constraint # added constraint: constraint((T0373)L71.CB, (T0373)R82.CB) [> 4.1660 = 6.9434 < 9.0264] w=0.6193 to align # Constraint # added constraint: constraint((T0373)L41.CB, (T0373)I80.CB) [> 4.4354 = 7.3923 < 9.6100] w=0.6108 to align # Constraint # added constraint: constraint((T0373)R82.CB, (T0373)T92.CB) [> 3.1775 = 5.2958 < 6.8845] w=0.5985 to align # Constraint # added constraint: constraint((T0373)S36.CB, (T0373)M62.CB) [> 3.9435 = 6.5725 < 8.5442] w=0.5948 to align # Constraint # added constraint: constraint((T0373)V81.CB, (T0373)L96.CB) [> 4.5810 = 7.6351 < 9.9256] w=0.5765 to align # Constraint # added constraint: constraint((T0373)T52.CB, (T0373)R91.CB) [> 3.3672 = 5.6121 < 7.2957] w=0.5700 to align # Constraint # added constraint: constraint((T0373)H83.CB, (T0373)T92.CB) [> 4.1888 = 6.9814 < 9.0758] w=0.5697 to align # Constraint # added constraint: constraint((T0373)D45.CB, (T0373)L104.CB) [> 3.2816 = 5.4693 < 7.1101] w=0.5538 to align # Constraint # added constraint: constraint((T0373)L38.CB, (T0373)N107.CB) [> 3.6989 = 6.1649 < 8.0143] w=0.5402 to align # Constraint # added constraint: constraint((T0373)L41.CB, (T0373)G100.CA) [> 4.0881 = 6.8135 < 8.8576] w=0.5251 to align # Constraint # added constraint: constraint((T0373)P53.CB, (T0373)T92.CB) [> 3.7452 = 6.2420 < 8.1146] w=0.5197 to align # Constraint # added constraint: constraint((T0373)D45.CB, (T0373)R101.CB) [> 4.1371 = 6.8951 < 8.9637] w=0.5179 to align # Constraint # added constraint: constraint((T0373)S36.CB, (T0373)N66.CB) [> 4.0815 = 6.8025 < 8.8433] w=0.4943 to align # Constraint # added constraint: constraint((T0373)D50.CB, (T0373)V94.CB) [> 4.0420 = 6.7366 < 8.7576] w=0.4830 to align # Constraint # added constraint: constraint((T0373)A57.CB, (T0373)N66.CB) [> 4.4709 = 7.4515 < 9.6870] w=0.4577 to align # Constraint # added constraint: constraint((T0373)D50.CB, (T0373)S95.CB) [> 3.0366 = 5.0610 < 6.5793] w=0.4542 to align # Constraint # added constraint: constraint((T0373)D50.CB, (T0373)R93.CB) [> 3.0310 = 5.0517 < 6.5672] w=0.4456 to align # Constraint # added constraint: constraint((T0373)A84.CB, (T0373)R93.CB) [> 4.3216 = 7.2027 < 9.3635] w=0.4364 to align # Constraint # added constraint: constraint((T0373)L41.CB, (T0373)N103.CB) [> 4.1413 = 6.9021 < 8.9727] w=0.3943 to align # Constraint # added constraint: constraint((T0373)L38.CB, (T0373)L104.CB) [> 3.7524 = 6.2539 < 8.1301] w=0.3817 to align # Constraint # added constraint: constraint((T0373)G42.CA, (T0373)R108.CB) [> 4.0875 = 6.8124 < 8.8562] w=0.3676 to align # Constraint # added constraint: constraint((T0373)V40.CB, (T0373)I80.CB) [> 4.6279 = 7.7132 < 10.0271] w=0.3598 to align # Constraint # added constraint: constraint((T0373)A28.CB, (T0373)L38.CB) [> 3.7979 = 6.3298 < 8.2287] w=0.3400 to align # Constraint # added constraint: constraint((T0373)L41.CB, (T0373)N107.CB) [> 4.1105 = 6.8508 < 8.9060] w=0.3375 to align # Constraint # added constraint: constraint((T0373)P53.CB, (T0373)R91.CB) [> 4.3756 = 7.2927 < 9.4805] w=0.2807 to align # Constraint # added constraint: constraint((T0373)Q34.CB, (T0373)L70.CB) [> 4.1867 = 6.9778 < 9.0711] w=0.2647 to align # Constraint # added constraint: constraint((T0373)A43.CB, (T0373)E55.CB) [> 4.2322 = 7.0536 < 9.1697] w=0.2382 to align # Constraint # added constraint: constraint((T0373)D50.CB, (T0373)H83.CB) [> 4.2013 = 7.0022 < 9.1029] w=0.2374 to align # Constraint # added constraint: constraint((T0373)E75.CB, (T0373)V94.CB) [> 4.5946 = 7.6576 < 9.9549] w=0.2347 to align # Constraint # added constraint: constraint((T0373)L38.CB, (T0373)R111.CB) [> 4.0888 = 6.8146 < 8.8590] w=0.2236 to align # Constraint # added constraint: constraint((T0373)P53.CB, (T0373)R82.CB) [> 4.5331 = 7.5551 < 9.8217] w=0.2193 to align # Constraint # added constraint: constraint((T0373)G42.CA, (T0373)L96.CB) [> 4.3668 = 7.2780 < 9.4614] w=0.2081 to align # Constraint # added constraint: constraint((T0373)E27.CB, (T0373)K110.CB) [> 3.3915 = 5.6526 < 7.3483] w=0.1944 to align # Constraint # added constraint: constraint((T0373)G48.CA, (T0373)L96.CB) [> 4.1577 = 6.9295 < 9.0084] w=0.1943 to align # Constraint # added constraint: constraint((T0373)V40.CB, (T0373)V94.CB) [> 4.5284 = 7.5473 < 9.8115] w=0.1939 to align # Constraint # added constraint: constraint((T0373)A28.CB, (T0373)N107.CB) [> 4.2752 = 7.1253 < 9.2628] w=0.1800 to align # Constraint # added constraint: constraint((T0373)S54.CB, (T0373)R91.CB) [> 4.2583 = 7.0972 < 9.2264] w=0.1797 to align # Constraint # added constraint: constraint((T0373)D31.CB, (T0373)N103.CB) [> 3.9376 = 6.5626 < 8.5314] w=0.1728 to align # Constraint # added constraint: constraint((T0373)R25.CB, (T0373)F35.CB) [> 4.0294 = 6.7158 < 8.7305] w=0.1728 to align # Constraint # added constraint: constraint((T0373)T52.CB, (T0373)R90.CB) [> 3.5127 = 5.8545 < 7.6108] w=0.1704 to align # Constraint # added constraint: constraint((T0373)L24.CB, (T0373)L38.CB) [> 4.2427 = 7.0711 < 9.1925] w=0.1655 to align # Constraint # added constraint: constraint((T0373)I44.CB, (T0373)L74.CB) [> 4.6593 = 7.7654 < 10.0951] w=0.1632 to align # Constraint # added constraint: constraint((T0373)G42.CA, (T0373)R111.CB) [> 4.1352 = 6.8920 < 8.9596] w=0.1517 to align # Constraint # added constraint: constraint((T0373)V33.CB, (T0373)N103.CB) [> 4.2918 = 7.1530 < 9.2989] w=0.1512 to align # Constraint # added constraint: constraint((T0373)V33.CB, (T0373)L79.CB) [> 4.3889 = 7.3148 < 9.5092] w=0.1511 to align # Constraint # added constraint: constraint((T0373)L74.CB, (T0373)G100.CA) [> 4.7221 = 7.8701 < 10.2312] w=0.1506 to align # Constraint # added constraint: constraint((T0373)L47.CB, (T0373)A59.CB) [> 4.5711 = 7.6185 < 9.9040] w=0.1409 to align # Constraint # added constraint: constraint((T0373)V39.CB, (T0373)R111.CB) [> 4.1697 = 6.9496 < 9.0344] w=0.1386 to align # Constraint # added constraint: constraint((T0373)Q37.CB, (T0373)L71.CB) [> 4.3250 = 7.2084 < 9.3709] w=0.1385 to align # Constraint # added constraint: constraint((T0373)L24.CB, (T0373)R111.CB) [> 3.5762 = 5.9603 < 7.7484] w=0.1368 to align # Constraint # added constraint: constraint((T0373)E27.CB, (T0373)G77.CA) [> 3.7410 = 6.2350 < 8.1054] w=0.1313 to align # Constraint # added constraint: constraint((T0373)A57.CB, (T0373)A68.CB) [> 4.5573 = 7.5955 < 9.8742] w=0.1294 to align # Constraint # added constraint: constraint((T0373)V39.CB, (T0373)N107.CB) [> 2.9255 = 4.8758 < 6.3385] w=0.1233 to align # Constraint # added constraint: constraint((T0373)T21.CB, (T0373)F35.CB) [> 3.9174 = 6.5290 < 8.4877] w=0.1224 to align # Constraint # added constraint: constraint((T0373)L41.CB, (T0373)V94.CB) [> 3.2925 = 5.4875 < 7.1337] w=0.1170 to align # Constraint # added constraint: constraint((T0373)V39.CB, (T0373)L104.CB) [> 3.4325 = 5.7208 < 7.4370] w=0.1170 to align # Constraint # added constraint: constraint((T0373)L24.CB, (T0373)F35.CB) [> 3.6602 = 6.1002 < 7.9303] w=0.1152 to align # Constraint # added constraint: constraint((T0373)E27.CB, (T0373)N107.CB) [> 3.6780 = 6.1299 < 7.9689] w=0.1152 to align # Constraint # added constraint: constraint((T0373)V51.CB, (T0373)R90.CB) [> 3.6246 = 6.0410 < 7.8533] w=0.1129 to align # Constraint # added constraint: constraint((T0373)F35.CB, (T0373)N107.CB) [> 3.1498 = 5.2497 < 6.8246] w=0.1096 to align # Constraint # added constraint: constraint((T0373)V33.CB, (T0373)N107.CB) [> 3.9174 = 6.5290 < 8.4877] w=0.1080 to align # Constraint # added constraint: constraint((T0373)G42.CA, (T0373)N107.CB) [> 3.4492 = 5.7488 < 7.4734] w=0.0996 to align # Constraint # added constraint: constraint((T0373)A118.CB, (T0373)L131.CB) [> 3.6804 = 6.1340 < 7.9742] w=0.0947 to align # Constraint # added constraint: constraint((T0373)L20.CB, (T0373)L115.CB) [> 4.0807 = 6.8012 < 8.8416] w=0.0936 to align # Constraint # added constraint: constraint((T0373)D50.CB, (T0373)L96.CB) [> 4.1373 = 6.8955 < 8.9641] w=0.0935 to align # Constraint # added constraint: constraint((T0373)R111.CB, (T0373)L131.CB) [> 3.7111 = 6.1852 < 8.0407] w=0.0898 to align # Constraint # added constraint: constraint((T0373)E27.CB, (T0373)W114.CB) [> 3.5371 = 5.8952 < 7.6637] w=0.0864 to align # Constraint # added constraint: constraint((T0373)E27.CB, (T0373)R111.CB) [> 3.6501 = 6.0835 < 7.9085] w=0.0864 to align # Constraint # added constraint: constraint((T0373)L47.CB, (T0373)L56.CB) [> 4.3197 = 7.1996 < 9.3594] w=0.0863 to align # Constraint # added constraint: constraint((T0373)R82.CB, (T0373)R91.CB) [> 3.9852 = 6.6420 < 8.6346] w=0.0862 to align # Constraint # added constraint: constraint((T0373)M119.CB, (T0373)R128.CB) [> 3.6621 = 6.1035 < 7.9345] w=0.0861 to align # Constraint # added constraint: constraint((T0373)D50.CB, (T0373)R90.CB) [> 2.9276 = 4.8794 < 6.3432] w=0.0841 to align # Constraint # added constraint: constraint((T0373)A43.CB, (T0373)R108.CB) [> 4.5533 = 7.5889 < 9.8655] w=0.0834 to align # Constraint # added constraint: constraint((T0373)W114.CB, (T0373)L131.CB) [> 3.1952 = 5.3254 < 6.9230] w=0.0809 to align # Constraint # added constraint: constraint((T0373)L41.CB, (T0373)R111.CB) [> 3.8434 = 6.4056 < 8.3273] w=0.0798 to align # Constraint # added constraint: constraint((T0373)D31.CB, (T0373)K110.CB) [> 4.1006 = 6.8344 < 8.8847] w=0.0792 to align # Constraint # added constraint: constraint((T0373)L24.CB, (T0373)W114.CB) [> 3.6055 = 6.0092 < 7.8120] w=0.0792 to align # Constraint # added constraint: constraint((T0373)E27.CB, (T0373)L115.CB) [> 3.6205 = 6.0342 < 7.8445] w=0.0792 to align # Constraint # added constraint: constraint((T0373)E27.CB, (T0373)L74.CB) [> 3.5728 = 5.9547 < 7.7411] w=0.0791 to align # Constraint # added constraint: constraint((T0373)V51.CB, (T0373)R91.CB) [> 3.8062 = 6.3436 < 8.2467] w=0.0790 to align # Constraint # added constraint: constraint((T0373)L41.CB, (T0373)R101.CB) [> 4.5927 = 7.6544 < 9.9508] w=0.0790 to align # Constraint # added constraint: constraint((T0373)R72.CB, (T0373)R82.CB) [> 4.6572 = 7.7621 < 10.0907] w=0.0790 to align # Constraint # added constraint: constraint((T0373)K110.CB, (T0373)L138.CB) [> 3.6930 = 6.1550 < 8.0015] w=0.0742 to align # Constraint # added constraint: constraint((T0373)L115.CB, (T0373)R128.CB) [> 3.8178 = 6.3630 < 8.2719] w=0.0736 to align # Constraint # added constraint: constraint((T0373)A28.CB, (T0373)K110.CB) [> 4.2425 = 7.0709 < 9.1922] w=0.0720 to align # Constraint # added constraint: constraint((T0373)L71.CB, (T0373)T92.CB) [> 4.3654 = 7.2757 < 9.4585] w=0.0719 to align # Constraint # added constraint: constraint((T0373)L24.CB, (T0373)K110.CB) [> 3.8539 = 6.4232 < 8.3502] w=0.0648 to align # Constraint # added constraint: constraint((T0373)L20.CB, (T0373)W114.CB) [> 3.8357 = 6.3928 < 8.3106] w=0.0648 to align # Constraint # added constraint: constraint((T0373)V33.CB, (T0373)L74.CB) [> 4.6631 = 7.7719 < 10.1034] w=0.0648 to align # Constraint # added constraint: constraint((T0373)D50.CB, (T0373)D85.CB) [> 4.1622 = 6.9371 < 9.0182] w=0.0647 to align # Constraint # added constraint: constraint((T0373)V116.CB, (T0373)R128.CB) [> 3.8671 = 6.4451 < 8.3787] w=0.0624 to align # Constraint # added constraint: constraint((T0373)A118.CB, (T0373)L130.CB) [> 3.8760 = 6.4601 < 8.3981] w=0.0593 to align # Constraint # added constraint: constraint((T0373)K110.CB, (T0373)L123.CB) [> 2.9615 = 4.9358 < 6.4165] w=0.0593 to align # Constraint # added constraint: constraint((T0373)L20.CB, (T0373)R111.CB) [> 3.8751 = 6.4585 < 8.3960] w=0.0576 to align # Constraint # added constraint: constraint((T0373)R23.CB, (T0373)G77.CA) [> 3.9949 = 6.6582 < 8.6557] w=0.0575 to align # Constraint # added constraint: constraint((T0373)L47.CB, (T0373)V94.CB) [> 4.0098 = 6.6830 < 8.6879] w=0.0575 to align # Constraint # added constraint: constraint((T0373)R117.CB, (T0373)L141.CB) [> 3.9143 = 6.5238 < 8.4809] w=0.0574 to align # Constraint # added constraint: constraint((T0373)R111.CB, (T0373)A134.CB) [> 4.5347 = 7.5578 < 9.8251] w=0.0544 to align # Constraint # added constraint: constraint((T0373)K110.CB, (T0373)A134.CB) [> 4.3260 = 7.2099 < 9.3729] w=0.0544 to align # Constraint # added constraint: constraint((T0373)R111.CB, (T0373)A132.CB) [> 3.9679 = 6.6132 < 8.5972] w=0.0535 to align # Constraint # added constraint: constraint((T0373)C122.CB, (T0373)F144.CB) [> 4.4571 = 7.4285 < 9.6571] w=0.0520 to align # Constraint # added constraint: constraint((T0373)L38.CB, (T0373)K110.CB) [> 4.5069 = 7.5114 < 9.7649] w=0.0504 to align # Constraint # added constraint: constraint((T0373)M119.CB, (T0373)L131.CB) [> 3.9586 = 6.5977 < 8.5770] w=0.0479 to align # Constraint # added constraint: constraint((T0373)W114.CB, (T0373)L138.CB) [> 3.4064 = 5.6773 < 7.3805] w=0.0473 to align # Constraint # added constraint: constraint((T0373)W114.CB, (T0373)L130.CB) [> 4.5082 = 7.5136 < 9.7677] w=0.0452 to align # Constraint # added constraint: constraint((T0373)V81.CB, (T0373)R93.CB) [> 3.1246 = 5.2077 < 6.7701] w=0.0431 to align # Constraint # added constraint: constraint((T0373)V81.CB, (T0373)T92.CB) [> 3.8714 = 6.4523 < 8.3880] w=0.0431 to align # Constraint # added constraint: constraint((T0373)I80.CB, (T0373)R93.CB) [> 3.8535 = 6.4226 < 8.3493] w=0.0431 to align # Constraint # added constraint: constraint((T0373)I80.CB, (T0373)T92.CB) [> 3.5644 = 5.9406 < 7.7228] w=0.0431 to align # Constraint # added constraint: constraint((T0373)L13.CB, (T0373)L74.CB) [> 4.0545 = 6.7574 < 8.7847] w=0.0429 to align # Constraint # added constraint: constraint((T0373)K110.CB, (T0373)G135.CA) [> 2.8179 = 4.6965 < 6.1054] w=0.0407 to align # Constraint # added constraint: constraint((T0373)W114.CB, (T0373)L141.CB) [> 3.1681 = 5.2802 < 6.8643] w=0.0398 to align # Constraint # added constraint: constraint((T0373)L7.CB, (T0373)T19.CB) [> 4.0107 = 6.6845 < 8.6898] w=0.0365 to align # Constraint # added constraint: constraint((T0373)D50.CB, (T0373)R91.CB) [> 3.0081 = 5.0135 < 6.5175] w=0.0360 to align # Constraint # added constraint: constraint((T0373)A118.CB, (T0373)L137.CB) [> 4.0950 = 6.8250 < 8.8724] w=0.0359 to align # Constraint # added constraint: constraint((T0373)M119.CB, (T0373)L130.CB) [> 3.6384 = 6.0640 < 7.8832] w=0.0338 to align # Constraint # added constraint: constraint((T0373)W114.CB, (T0373)A142.CB) [> 4.0845 = 6.8075 < 8.8497] w=0.0329 to align # Constraint # added constraint: constraint((T0373)W114.CB, (T0373)A134.CB) [> 2.5465 = 4.2442 < 5.5174] w=0.0308 to align # Constraint # added constraint: constraint((T0373)G78.CA, (T0373)N107.CB) [> 3.4365 = 5.7274 < 7.4456] w=0.0288 to align # Constraint # added constraint: constraint((T0373)D50.CB, (T0373)R101.CB) [> 4.5846 = 7.6409 < 9.9332] w=0.0288 to align # Constraint # added constraint: constraint((T0373)T92.CB, (T0373)R111.CB) [> 3.6242 = 6.0404 < 7.8525] w=0.0288 to align # Constraint # added constraint: constraint((T0373)A118.CB, (T0373)L138.CB) [> 3.3164 = 5.5273 < 7.1855] w=0.0288 to align # Constraint # added constraint: constraint((T0373)M119.CB, (T0373)L137.CB) [> 3.6459 = 6.0764 < 7.8994] w=0.0279 to align # Constraint # added constraint: constraint((T0373)L115.CB, (T0373)A134.CB) [> 2.6916 = 4.4860 < 5.8318] w=0.0260 to align # Constraint # added constraint: constraint((T0373)D50.CB, (T0373)G89.CA) [> 3.6824 = 6.1373 < 7.9785] w=0.0242 to align # Constraint # added constraint: constraint((T0373)S98.CB, (T0373)N107.CB) [> 3.3053 = 5.5089 < 7.1616] w=0.0222 to align # Constraint # added constraint: constraint((T0373)L20.CB, (T0373)A121.CB) [> 4.0167 = 6.6946 < 8.7029] w=0.0216 to align # Constraint # added constraint: constraint((T0373)F35.CB, (T0373)A69.CB) [> 4.6589 = 7.7648 < 10.0942] w=0.0216 to align # Constraint # added constraint: constraint((T0373)G77.CA, (T0373)N107.CB) [> 3.7381 = 6.2303 < 8.0993] w=0.0216 to align # Constraint # added constraint: constraint((T0373)L9.CB, (T0373)E27.CB) [> 3.3896 = 5.6494 < 7.3442] w=0.0216 to align # Constraint # added constraint: constraint((T0373)D50.CB, (T0373)T92.CB) [> 3.6275 = 6.0458 < 7.8595] w=0.0216 to align # Constraint # added constraint: constraint((T0373)I44.CB, (T0373)N107.CB) [> 3.4238 = 5.7064 < 7.4183] w=0.0216 to align # Constraint # added constraint: constraint((T0373)A43.CB, (T0373)L74.CB) [> 3.9472 = 6.5787 < 8.5524] w=0.0216 to align # Constraint # added constraint: constraint((T0373)A43.CB, (T0373)L70.CB) [> 3.5078 = 5.8464 < 7.6003] w=0.0216 to align # Constraint # added constraint: constraint((T0373)H120.CB, (T0373)L138.CB) [> 3.4488 = 5.7481 < 7.4725] w=0.0216 to align # Constraint # added constraint: constraint((T0373)I44.CB, (T0373)R93.CB) [> 3.6368 = 6.0613 < 7.8797] w=0.0216 to align # Constraint # added constraint: constraint((T0373)L9.CB, (T0373)M62.CB) [> 3.6346 = 6.0576 < 7.8748] w=0.0215 to align # Constraint # added constraint: constraint((T0373)L9.CB, (T0373)N66.CB) [> 3.8872 = 6.4787 < 8.4223] w=0.0215 to align # Constraint # added constraint: constraint((T0373)L9.CB, (T0373)L67.CB) [> 4.7513 = 7.9188 < 10.2945] w=0.0215 to align # Constraint # added constraint: constraint((T0373)A10.CB, (T0373)L70.CB) [> 3.2560 = 5.4267 < 7.0547] w=0.0215 to align # Constraint # added constraint: constraint((T0373)A10.CB, (T0373)L74.CB) [> 3.9521 = 6.5869 < 8.5629] w=0.0215 to align # Constraint # added constraint: constraint((T0373)R14.CB, (T0373)L96.CB) [> 4.3413 = 7.2355 < 9.4062] w=0.0215 to align # Constraint # added constraint: constraint((T0373)R14.CB, (T0373)L79.CB) [> 4.0322 = 6.7203 < 8.7364] w=0.0215 to align # Constraint # added constraint: constraint((T0373)L13.CB, (T0373)L71.CB) [> 3.9369 = 6.5615 < 8.5299] w=0.0215 to align # Constraint # added constraint: constraint((T0373)L13.CB, (T0373)L67.CB) [> 3.4929 = 5.8215 < 7.5679] w=0.0215 to align # Constraint # added constraint: constraint((T0373)L13.CB, (T0373)M62.CB) [> 4.4280 = 7.3800 < 9.5940] w=0.0215 to align # Constraint # added constraint: constraint((T0373)L13.CB, (T0373)L56.CB) [> 3.6143 = 6.0238 < 7.8309] w=0.0215 to align # Constraint # added constraint: constraint((T0373)H12.CB, (T0373)M62.CB) [> 3.9516 = 6.5859 < 8.5617] w=0.0215 to align # Constraint # added constraint: constraint((T0373)E27.CB, (T0373)S36.CB) [> 3.1215 = 5.2024 < 6.7632] w=0.0215 to align # Constraint # added constraint: constraint((T0373)E27.CB, (T0373)V39.CB) [> 3.1029 = 5.1716 < 6.7230] w=0.0215 to align # Constraint # added constraint: constraint((T0373)E27.CB, (T0373)V40.CB) [> 4.7633 = 7.9389 < 10.3206] w=0.0215 to align # Constraint # added constraint: constraint((T0373)W114.CB, (T0373)E127.CB) [> 3.6800 = 6.1334 < 7.9735] w=0.0209 to align # Constraint # added constraint: constraint((T0373)D6.CB, (T0373)L20.CB) [> 3.7928 = 6.3214 < 8.2178] w=0.0150 to align # Constraint # added constraint: constraint((T0373)D50.CB, (T0373)S97.CB) [> 4.4964 = 7.4941 < 9.7423] w=0.0144 to align # Constraint # added constraint: constraint((T0373)L13.CB, (T0373)L138.CB) [> 4.7752 = 7.9587 < 10.3463] w=0.0144 to align # Constraint # added constraint: constraint((T0373)T19.CB, (T0373)W114.CB) [> 3.9780 = 6.6301 < 8.6191] w=0.0144 to align # Constraint # added constraint: constraint((T0373)Q16.CB, (T0373)C122.CB) [> 4.7783 = 7.9639 < 10.3531] w=0.0144 to align # Constraint # added constraint: constraint((T0373)V39.CB, (T0373)V51.CB) [> 4.6651 = 7.7752 < 10.1078] w=0.0144 to align # Constraint # added constraint: constraint((T0373)Q37.CB, (T0373)G100.CA) [> 3.8429 = 6.4048 < 8.3263] w=0.0144 to align # Constraint # added constraint: constraint((T0373)S36.CB, (T0373)L74.CB) [> 3.9834 = 6.6391 < 8.6308] w=0.0144 to align # Constraint # added constraint: constraint((T0373)L20.CB, (T0373)K110.CB) [> 4.7519 = 7.9198 < 10.2957] w=0.0144 to align # Constraint # added constraint: constraint((T0373)Q8.CB, (T0373)E27.CB) [> 3.8648 = 6.4413 < 8.3737] w=0.0144 to align # Constraint # added constraint: constraint((T0373)L9.CB, (T0373)M119.CB) [> 4.1173 = 6.8621 < 8.9207] w=0.0144 to align # Constraint # added constraint: constraint((T0373)L41.CB, (T0373)K110.CB) [> 4.3185 = 7.1975 < 9.3568] w=0.0144 to align # Constraint # added constraint: constraint((T0373)V81.CB, (T0373)R91.CB) [> 4.0433 = 6.7387 < 8.7604] w=0.0144 to align # Constraint # added constraint: constraint((T0373)D50.CB, (T0373)A84.CB) [> 4.4228 = 7.3713 < 9.5827] w=0.0144 to align # Constraint # added constraint: constraint((T0373)L9.CB, (T0373)G78.CA) [> 4.1621 = 6.9368 < 9.0179] w=0.0144 to align # Constraint # added constraint: constraint((T0373)L131.CB, (T0373)R140.CB) [> 3.2721 = 5.4535 < 7.0896] w=0.0144 to align # Constraint # added constraint: constraint((T0373)E27.CB, (T0373)R46.CB) [> 3.8694 = 6.4490 < 8.3837] w=0.0143 to align # Constraint # added constraint: constraint((T0373)V17.CB, (T0373)N107.CB) [> 4.4360 = 7.3933 < 9.6113] w=0.0141 to align # Constraint # added constraint: constraint((T0373)V17.CB, (T0373)L104.CB) [> 3.5055 = 5.8425 < 7.5953] w=0.0141 to align # Constraint # added constraint: constraint((T0373)V17.CB, (T0373)I80.CB) [> 4.5697 = 7.6161 < 9.9010] w=0.0141 to align # Constraint # added constraint: constraint((T0373)V17.CB, (T0373)L74.CB) [> 3.6934 = 6.1557 < 8.0024] w=0.0141 to align # Constraint # added constraint: constraint((T0373)Q16.CB, (T0373)L74.CB) [> 4.1342 = 6.8903 < 8.9574] w=0.0141 to align # Constraint # added constraint: constraint((T0373)L123.CB, (T0373)L137.CB) [> 3.1695 = 5.2825 < 6.8673] w=0.0129 to align # Constraint # added constraint: constraint((T0373)L123.CB, (T0373)L138.CB) [> 3.7732 = 6.2886 < 8.1752] w=0.0129 to align # Constraint # added constraint: constraint((T0373)Q16.CB, (T0373)L131.CB) [> 4.6668 = 7.7780 < 10.1114] w=0.0072 to align # Constraint # added constraint: constraint((T0373)A10.CB, (T0373)G135.CA) [> 3.4634 = 5.7723 < 7.5040] w=0.0072 to align # Constraint # added constraint: constraint((T0373)H12.CB, (T0373)T21.CB) [> 3.7637 = 6.2728 < 8.1546] w=0.0072 to align # Constraint # added constraint: constraint((T0373)H12.CB, (T0373)A134.CB) [> 2.9688 = 4.9480 < 6.4324] w=0.0072 to align # Constraint # added constraint: constraint((T0373)L9.CB, (T0373)L141.CB) [> 4.7675 = 7.9458 < 10.3295] w=0.0072 to align # Constraint # added constraint: constraint((T0373)S15.CB, (T0373)A118.CB) [> 4.5612 = 7.6021 < 9.8827] w=0.0072 to align # Constraint # added constraint: constraint((T0373)Q16.CB, (T0373)R111.CB) [> 4.2228 = 7.0379 < 9.1493] w=0.0072 to align # Constraint # added constraint: constraint((T0373)A10.CB, (T0373)E27.CB) [> 4.3590 = 7.2650 < 9.4445] w=0.0072 to align # Constraint # added constraint: constraint((T0373)A10.CB, (T0373)A28.CB) [> 3.5211 = 5.8685 < 7.6291] w=0.0072 to align # Constraint # added constraint: constraint((T0373)E75.CB, (T0373)S97.CB) [> 4.4417 = 7.4028 < 9.6236] w=0.0072 to align # Constraint # added constraint: constraint((T0373)A11.CB, (T0373)N103.CB) [> 4.6955 = 7.8259 < 10.1736] w=0.0072 to align # Constraint # added constraint: constraint((T0373)V94.CB, (T0373)W114.CB) [> 4.7707 = 7.9512 < 10.3366] w=0.0072 to align # Constraint # added constraint: constraint((T0373)C122.CB, (T0373)L141.CB) [> 3.8566 = 6.4276 < 8.3559] w=0.0072 to align # Constraint # added constraint: constraint((T0373)Q16.CB, (T0373)L56.CB) [> 2.8149 = 4.6915 < 6.0989] w=0.0072 to align # Constraint # added constraint: constraint((T0373)Q16.CB, (T0373)E55.CB) [> 4.6733 = 7.7888 < 10.1254] w=0.0072 to align # Constraint # added constraint: constraint((T0373)L74.CB, (T0373)T92.CB) [> 4.5487 = 7.5812 < 9.8555] w=0.0072 to align # Constraint # added constraint: constraint((T0373)N107.CB, (T0373)A133.CB) [> 4.3730 = 7.2883 < 9.4747] w=0.0069 to align # Constraint # added constraint: constraint((T0373)N107.CB, (T0373)A142.CB) [> 3.1417 = 5.2362 < 6.8071] w=0.0063 to align # Constraint # added constraint: constraint((T0373)K110.CB, (T0373)L141.CB) [> 4.3479 = 7.2465 < 9.4205] w=0.0063 to align # Constraint # added constraint: constraint((T0373)K110.CB, (T0373)A142.CB) [> 2.6491 = 4.4151 < 5.7396] w=0.0063 to align # Constraint # added constraint: constraint((T0373)R111.CB, (T0373)T139.CB) [> 4.1729 = 6.9549 < 9.0413] w=0.0063 to align # Constraint # added constraint: constraint((T0373)R111.CB, (T0373)L141.CB) [> 4.6064 = 7.6773 < 9.9805] w=0.0063 to align # Constraint # added constraint: constraint((T0373)W114.CB, (T0373)L137.CB) [> 4.4021 = 7.3368 < 9.5379] w=0.0063 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0373/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0373/decoys/ # ReadConformPDB reading from PDB file chimera-1-2a61A.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 122 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-2-2a61A.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-1-1jgsA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-1-1jgsA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-1-1lnwA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-1-1lnwA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-1-2a61A.pdb.gz looking for chain 'A' model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-1-2a61A # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-1-2fbhA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-1-2fbhA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-6-1jgsA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-6-1jgsA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-6-1lnwA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-6-1lnwA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-6-2a61A.pdb.gz looking for chain 'A' model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-6-2a61A # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-6-2fbhA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-6-2fbhA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-7-1jgsA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-7-1jgsA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-7-1lnwA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-7-1lnwA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-7-2a61A.pdb.gz looking for chain 'A' model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-7-2a61A # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-7-2fbhA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-7-2fbhA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-chimera-1-2a61A.pdb.gz looking for chain 'A' model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-chimera-1-2a61A # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 39 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 7 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 Skipped atom 54, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 56, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 58, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 60, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 134, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 136, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 198, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 200, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 234, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 236, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 238, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 240, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 334, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 336, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 338, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 340, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 422, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 424, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 426, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 428, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 446, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 448, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 518, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 520, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 Skipped atom 555, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 Skipped atom 330, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 332, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 334, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 336, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 454, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 456, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 534, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 536, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 Skipped atom 54, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 56, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 58, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 60, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 134, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 136, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 198, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 200, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 234, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 236, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 238, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 240, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 334, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 336, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 338, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 340, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 422, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 424, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 426, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 428, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 446, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 448, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 518, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 520, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 Skipped atom 555, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 Skipped atom 330, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 332, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 334, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 336, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 454, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 456, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 534, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 536, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 16 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 Skipped atom 54, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 56, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 58, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 60, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 134, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 136, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 198, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 200, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 234, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 236, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 238, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 240, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 334, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 336, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 338, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 340, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 422, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 424, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 426, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 428, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 446, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 448, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 518, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz Skipped atom 520, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL1.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 2 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 Skipped atom 326, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 328, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 330, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 332, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 446, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 448, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 Skipped atom 54, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 56, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 58, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 60, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 134, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 136, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 198, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 200, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 234, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 236, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 238, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 240, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 334, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 336, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 338, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 340, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 422, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 424, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 426, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 428, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 446, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 448, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 518, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 520, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 Skipped atom 547, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 Skipped atom 110, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 112, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 114, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 116, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 198, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 200, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 202, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 204, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 334, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 336, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 338, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 340, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 386, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 388, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 422, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 424, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 426, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 428, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 478, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 480, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 482, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 484, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 518, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz Skipped atom 520, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL5.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 Skipped atom 179, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 267, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 269, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 271, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 273, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 Skipped atom 231, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 264, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 Skipped atom 151, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 428, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 430, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 432, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz Skipped atom 434, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 Skipped atom 547, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 Skipped atom 54, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 56, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 58, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 60, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 134, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 136, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 198, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 200, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 234, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 236, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 238, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 240, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 334, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 336, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 338, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 340, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 422, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 424, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 426, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 428, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 446, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 448, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 518, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 520, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 Skipped atom 330, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 332, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 334, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 336, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 454, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 456, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 534, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz Skipped atom 536, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL5.pdb.gz # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 26 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/panther3_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0373)D45.N and (T0373)A57.N only 0.000 apart, marking (T0373)A57.N as missing WARNING: atoms too close: (T0373)D45.CA and (T0373)A57.CA only 0.000 apart, marking (T0373)A57.CA as missing WARNING: atoms too close: (T0373)D45.CB and (T0373)A57.CB only 0.000 apart, marking (T0373)A57.CB as missing WARNING: atoms too close: (T0373)D45.O and (T0373)A57.O only 0.000 apart, marking (T0373)A57.O as missing WARNING: atoms too close: (T0373)D45.C and (T0373)A57.C only 0.000 apart, marking (T0373)A57.C as missing WARNING: atoms too close: (T0373)A57.N and (T0373)A58.N only 0.000 apart, marking (T0373)A57.N as missing WARNING: atoms too close: (T0373)D45.N and (T0373)A58.N only 0.000 apart, marking (T0373)A58.N as missing WARNING: atoms too close: (T0373)A57.CA and (T0373)A58.CA only 0.000 apart, marking (T0373)A58.CA as missing WARNING: atoms too close: (T0373)D45.CA and (T0373)A58.CA only 0.000 apart, marking (T0373)A58.CA as missing WARNING: atoms too close: (T0373)A57.CB and (T0373)A58.CB only 0.000 apart, marking (T0373)A58.CB as missing WARNING: atoms too close: (T0373)D45.CB and (T0373)A58.CB only 0.000 apart, marking (T0373)A58.CB as missing WARNING: atoms too close: (T0373)A57.O and (T0373)A58.O only 0.000 apart, marking (T0373)A58.O as missing WARNING: atoms too close: (T0373)D45.O and (T0373)A58.O only 0.000 apart, marking (T0373)A58.O as missing WARNING: atoms too close: (T0373)A57.C and (T0373)A58.C only 0.000 apart, marking (T0373)A58.C as missing WARNING: atoms too close: (T0373)D45.C and (T0373)A58.C only 0.000 apart, marking (T0373)A58.C as missing WARNING: atoms too close: (T0373)A58.N and (T0373)A59.N only 0.000 apart, marking (T0373)A58.N as missing WARNING: atoms too close: (T0373)A57.N and (T0373)A59.N only 0.000 apart, marking (T0373)A57.N as missing WARNING: atoms too close: (T0373)D45.N and (T0373)A59.N only 0.000 apart, marking (T0373)A59.N as missing WARNING: atoms too close: (T0373)A58.CA and (T0373)A59.CA only 0.000 apart, marking (T0373)A59.CA as missing WARNING: atoms too close: (T0373)A57.CA and (T0373)A59.CA only 0.000 apart, marking (T0373)A59.CA as missing WARNING: atoms too close: (T0373)D45.CA and (T0373)A59.CA only 0.000 apart, marking (T0373)A59.CA as missing WARNING: atoms too close: (T0373)A58.CB and (T0373)A59.CB only 0.000 apart, marking (T0373)A59.CB as missing WARNING: atoms too close: (T0373)A57.CB and (T0373)A59.CB only 0.000 apart, marking (T0373)A59.CB as missing WARNING: atoms too close: (T0373)D45.CB and (T0373)A59.CB only 0.000 apart, marking (T0373)A59.CB as missing WARNING: atoms too close: (T0373)A58.O and (T0373)A59.O only 0.000 apart, marking (T0373)A59.O as missing WARNING: atoms too close: (T0373)A57.O and (T0373)A59.O only 0.000 apart, marking (T0373)A59.O as missing WARNING: atoms too close: (T0373)D45.O and (T0373)A59.O only 0.000 apart, marking (T0373)A59.O as missing WARNING: atoms too close: (T0373)A58.C and (T0373)A59.C only 0.000 apart, marking (T0373)A59.C as missing WARNING: atoms too close: (T0373)A57.C and (T0373)A59.C only 0.000 apart, marking (T0373)A59.C as missing WARNING: atoms too close: (T0373)D45.C and (T0373)A59.C only 0.000 apart, marking (T0373)A59.C as missing # WARNING: incomplete conformation T0373 can't currently be optimized by undertaker # naming current conformation panther3_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 264 model score -0.5128 model score -0.5232 model score 0.5718 model score 0.5718 model score 0.5718 model score 0.5718 model score -0.5014 model score -0.5014 model score -0.5015 model score -0.5015 model score -0.4756 model score -0.4756 model score -0.4755 model score -0.4756 model score -0.5128 model score -0.2166 model score -0.2166 model score -0.2166 model score -0.2166 model score -0.2166 model score -0.2166 model score -0.2166 model score -0.5557 model score -0.3024 model score -0.4509 model score -0.4500 model score -0.3366 model score 0.7234 model score 1.2804 model score 1.1546 model score 1.2068 model score 1.4572 model score -0.5037 model score -0.4872 model score -0.4200 model score -0.4080 model score -0.5279 model score -0.4412 model score -0.5063 model score -0.4991 model score -0.4751 model score -0.5004 model score -0.3485 model score -0.5257 model score -0.4896 model score -0.5057 model score -0.4932 model score -0.2557 model score 1.2797 model score 1.2687 model score 1.2552 model score 1.2773 model score 1.2547 model score -0.5461 model score -0.5327 model score -0.4532 model score -0.5555 model score -0.4496 model score -0.5064 model score -0.4751 model score -0.4365 model score -0.5004 model score -0.4991 model score -0.5791 model score -0.5557 model score -0.4500 model score -0.4341 model score -0.4459 model score 1.2552 model score 1.2537 model score 1.2532 model score 1.2531 model score 1.2540 model score 1.2552 model score 1.2537 model score 1.2532 model score 1.2531 model score 1.2540 model score 1.6079 model score 1.7598 model score 1.9239 model score 2.1654 model score 1.8036 model score -0.5009 model score -0.4944 model score -0.4895 model score -0.3023 model score -0.4361 model score 1.2552 model score 1.2556 model score 1.2547 model score 1.2537 model score 1.2546 model score -0.4790 model score -0.4365 model score -0.4079 model score -0.5180 model score -0.4426 model score -0.4655 model score -0.4221 model score -0.3785 model score -0.4836 model score -0.5165 model score -0.4916 model score -0.4799 model score -0.5286 model score -0.5261 model score -0.4740 model score -0.5504 model score -0.4915 model score -0.5001 model score 0.0507 model score -0.2196 model score 0.1033 model score -0.2467 model score -0.3069 model score -0.5292 model score -0.4667 model score -0.4159 model score -0.4078 model score -0.1654 model score 1.2537 model score -0.4979 model score -0.4928 model score -0.5026 model score -0.5627 model score -0.5470 model score -0.4928 model score -0.4880 model score -0.5026 model score -0.4910 model score -0.5627 model score -0.5958 model score -0.6007 model score -0.6029 model score -0.5292 model score 1.2924 model score 1.2627 model score 1.2857 model score 1.2901 model score 1.2606 model score -0.5236 model score -0.5086 model score -0.4966 model score -0.5312 model score -0.5344 model score -0.4817 model score -0.4855 model score -0.5009 model score -0.4554 model score -0.5139 model score -0.4765 model score -0.5175 model score -0.4561 model score -0.4561 model score -0.4561 model score -0.4561 model score -0.5194 model score -0.5059 model score -0.4386 model score -0.3829 model score -0.4900 model score -0.4662 model score -0.5346 model score -0.4700 model score -0.4688 model score -0.5352 model score -0.4583 model score -0.5024 model score -0.1829 model score -0.4921 model score -0.4411 model score -0.5143 model score -0.4901 model score -0.2290 model score -0.5014 model score -0.4551 model score -0.5144 model score -0.5147 model score -0.5059 model score -0.5072 model score -0.3829 model score -0.4555 model score -0.3880 model score -0.4848 model score -0.5229 model score -0.4173 model score 1.2531 model score 1.2552 model score 1.2532 model score 1.2538 model score 1.2536 model score 1.2543 model score 1.2531 model score 1.2541 model score 1.2533 model score 1.2544 model score -0.5034 model score -0.2276 model score -0.0621 model score -0.4466 model score -0.0090 model score -0.4911 model score -0.5096 model score -0.5243 model score -0.3826 model score -0.4889 model score -0.4759 model score -0.5184 model score -0.5139 model score -0.4161 model score -0.4937 model score -0.4911 model score -0.5243 model score -0.5096 model score -0.4233 model score -0.4934 model score 1.2532 model score 1.2556 model score 1.2552 model score 1.2537 model score 1.2531 model score -0.3835 model score 1.2532 model score 1.2556 model score 1.2552 model score 1.2537 model score 1.2531 model score -0.5834 model score -0.5855 model score -0.5788 model score -0.5932 model score -0.6107 model score -0.4815 model score -0.4794 model score 1.2556 model score 1.2537 model score 1.2547 model score 1.2538 model score 1.2551 model score -0.4987 model score -0.5583 model score -0.5450 model score -0.4814 model score -0.4941 model score -0.4950 model score -0.5039 model score -0.2209 model score -0.1234 model score -0.1908 model score -0.4827 model score -0.3986 model score -0.4959 model score -0.4980 model score -0.4817 model score -0.5741 model score -0.3539 model score -0.4535 model score -0.3720 model score -0.4909 model score -0.3406 model score -0.2721 model score 0.1755 model score -0.5191 weight: 0.9683 eval: -0.5128 min: -0.6107 max: 2.1654 weight: 0.9717 eval: -0.5232 min: -0.6107 max: 2.1654 weight: 0.6167 eval: 0.5718 min: -0.6107 max: 2.1654 weight: 0.6167 eval: 0.5718 min: -0.6107 max: 2.1654 weight: 0.6167 eval: 0.5718 min: -0.6107 max: 2.1654 weight: 0.6166 eval: 0.5718 min: -0.6107 max: 2.1654 weight: 0.9646 eval: -0.5014 min: -0.6107 max: 2.1654 weight: 0.9646 eval: -0.5014 min: -0.6107 max: 2.1654 weight: 0.9646 eval: -0.5015 min: -0.6107 max: 2.1654 weight: 0.9646 eval: -0.5015 min: -0.6107 max: 2.1654 weight: 0.9562 eval: -0.4756 min: -0.6107 max: 2.1654 weight: 0.9562 eval: -0.4756 min: -0.6107 max: 2.1654 weight: 0.9562 eval: -0.4755 min: -0.6107 max: 2.1654 weight: 0.9562 eval: -0.4756 min: -0.6107 max: 2.1654 weight: 0.9683 eval: -0.5128 min: -0.6107 max: 2.1654 weight: 0.8722 eval: -0.2166 min: -0.6107 max: 2.1654 weight: 0.8722 eval: -0.2166 min: -0.6107 max: 2.1654 weight: 0.8722 eval: -0.2166 min: -0.6107 max: 2.1654 weight: 0.8722 eval: -0.2166 min: -0.6107 max: 2.1654 weight: 0.8722 eval: -0.2166 min: -0.6107 max: 2.1654 weight: 0.8722 eval: -0.2166 min: -0.6107 max: 2.1654 weight: 0.8722 eval: -0.2166 min: -0.6107 max: 2.1654 weight: 0.9822 eval: -0.5557 min: -0.6107 max: 2.1654 weight: 0.9001 eval: -0.3024 min: -0.6107 max: 2.1654 weight: 0.9482 eval: -0.4509 min: -0.6107 max: 2.1654 weight: 0.9479 eval: -0.4500 min: -0.6107 max: 2.1654 weight: 0.9111 eval: -0.3366 min: -0.6107 max: 2.1654 weight: 0.5675 eval: 0.7234 min: -0.6107 max: 2.1654 weight: 0.3869 eval: 1.2804 min: -0.6107 max: 2.1654 weight: 0.4277 eval: 1.1546 min: -0.6107 max: 2.1654 weight: 0.4108 eval: 1.2068 min: -0.6107 max: 2.1654 weight: 0.3296 eval: 1.4572 min: -0.6107 max: 2.1654 weight: 0.9653 eval: -0.5037 min: -0.6107 max: 2.1654 weight: 0.9600 eval: -0.4872 min: -0.6107 max: 2.1654 weight: 0.9382 eval: -0.4200 min: -0.6107 max: 2.1654 weight: 0.9343 eval: -0.4080 min: -0.6107 max: 2.1654 weight: 0.9732 eval: -0.5279 min: -0.6107 max: 2.1654 weight: 0.9451 eval: -0.4412 min: -0.6107 max: 2.1654 weight: 0.9662 eval: -0.5063 min: -0.6107 max: 2.1654 weight: 0.9638 eval: -0.4991 min: -0.6107 max: 2.1654 weight: 0.9560 eval: -0.4751 min: -0.6107 max: 2.1654 weight: 0.9642 eval: -0.5004 min: -0.6107 max: 2.1654 weight: 0.9150 eval: -0.3485 min: -0.6107 max: 2.1654 weight: 0.9725 eval: -0.5257 min: -0.6107 max: 2.1654 weight: 0.9608 eval: -0.4896 min: -0.6107 max: 2.1654 weight: 0.9660 eval: -0.5057 min: -0.6107 max: 2.1654 weight: 0.9619 eval: -0.4932 min: -0.6107 max: 2.1654 weight: 0.8849 eval: -0.2557 min: -0.6107 max: 2.1654 weight: 0.3871 eval: 1.2797 min: -0.6107 max: 2.1654 weight: 0.3907 eval: 1.2687 min: -0.6107 max: 2.1654 weight: 0.3951 eval: 1.2552 min: -0.6107 max: 2.1654 weight: 0.3879 eval: 1.2773 min: -0.6107 max: 2.1654 weight: 0.3952 eval: 1.2547 min: -0.6107 max: 2.1654 weight: 0.9791 eval: -0.5461 min: -0.6107 max: 2.1654 weight: 0.9747 eval: -0.5327 min: -0.6107 max: 2.1654 weight: 0.9489 eval: -0.4532 min: -0.6107 max: 2.1654 weight: 0.9821 eval: -0.5555 min: -0.6107 max: 2.1654 weight: 0.9478 eval: -0.4496 min: -0.6107 max: 2.1654 weight: 0.9662 eval: -0.5064 min: -0.6107 max: 2.1654 weight: 0.9560 eval: -0.4751 min: -0.6107 max: 2.1654 weight: 0.9435 eval: -0.4365 min: -0.6107 max: 2.1654 weight: 0.9642 eval: -0.5004 min: -0.6107 max: 2.1654 weight: 0.9638 eval: -0.4991 min: -0.6107 max: 2.1654 weight: 0.9897 eval: -0.5791 min: -0.6107 max: 2.1654 weight: 0.9822 eval: -0.5557 min: -0.6107 max: 2.1654 weight: 0.9479 eval: -0.4500 min: -0.6107 max: 2.1654 weight: 0.9428 eval: -0.4341 min: -0.6107 max: 2.1654 weight: 0.9466 eval: -0.4459 min: -0.6107 max: 2.1654 weight: 0.3951 eval: 1.2552 min: -0.6107 max: 2.1654 weight: 0.3956 eval: 1.2537 min: -0.6107 max: 2.1654 weight: 0.3958 eval: 1.2532 min: -0.6107 max: 2.1654 weight: 0.3958 eval: 1.2531 min: -0.6107 max: 2.1654 weight: 0.3955 eval: 1.2540 min: -0.6107 max: 2.1654 weight: 0.3951 eval: 1.2552 min: -0.6107 max: 2.1654 weight: 0.3956 eval: 1.2537 min: -0.6107 max: 2.1654 weight: 0.3958 eval: 1.2532 min: -0.6107 max: 2.1654 weight: 0.3958 eval: 1.2531 min: -0.6107 max: 2.1654 weight: 0.3955 eval: 1.2540 min: -0.6107 max: 2.1654 weight: 0.2808 eval: 1.6079 min: -0.6107 max: 2.1654 weight: 0.2315 eval: 1.7598 min: -0.6107 max: 2.1654 weight: 0.1783 eval: 1.9239 min: -0.6107 max: 2.1654 weight: 0.1000 eval: 2.1654 min: -0.6107 max: 2.1654 weight: 0.2173 eval: 1.8036 min: -0.6107 max: 2.1654 weight: 0.9644 eval: -0.5009 min: -0.6107 max: 2.1654 weight: 0.9623 eval: -0.4944 min: -0.6107 max: 2.1654 weight: 0.9607 eval: -0.4895 min: -0.6107 max: 2.1654 weight: 0.9000 eval: -0.3023 min: -0.6107 max: 2.1654 weight: 0.9434 eval: -0.4361 min: -0.6107 max: 2.1654 weight: 0.3951 eval: 1.2552 min: -0.6107 max: 2.1654 weight: 0.3950 eval: 1.2556 min: -0.6107 max: 2.1654 weight: 0.3953 eval: 1.2547 min: -0.6107 max: 2.1654 weight: 0.3956 eval: 1.2537 min: -0.6107 max: 2.1654 weight: 0.3953 eval: 1.2546 min: -0.6107 max: 2.1654 weight: 0.9573 eval: -0.4790 min: -0.6107 max: 2.1654 weight: 0.9435 eval: -0.4365 min: -0.6107 max: 2.1654 weight: 0.9343 eval: -0.4079 min: -0.6107 max: 2.1654 weight: 0.9700 eval: -0.5180 min: -0.6107 max: 2.1654 weight: 0.9455 eval: -0.4426 min: -0.6107 max: 2.1654 weight: 0.9529 eval: -0.4655 min: -0.6107 max: 2.1654 weight: 0.9389 eval: -0.4221 min: -0.6107 max: 2.1654 weight: 0.9247 eval: -0.3785 min: -0.6107 max: 2.1654 weight: 0.9588 eval: -0.4836 min: -0.6107 max: 2.1654 weight: 0.9695 eval: -0.5165 min: -0.6107 max: 2.1654 weight: 0.9614 eval: -0.4916 min: -0.6107 max: 2.1654 weight: 0.9576 eval: -0.4799 min: -0.6107 max: 2.1654 weight: 0.9734 eval: -0.5286 min: -0.6107 max: 2.1654 weight: 0.9726 eval: -0.5261 min: -0.6107 max: 2.1654 weight: 0.9557 eval: -0.4740 min: -0.6107 max: 2.1654 weight: 0.9805 eval: -0.5504 min: -0.6107 max: 2.1654 weight: 0.9614 eval: -0.4915 min: -0.6107 max: 2.1654 weight: 0.9642 eval: -0.5001 min: -0.6107 max: 2.1654 weight: 0.7856 eval: 0.0507 min: -0.6107 max: 2.1654 weight: 0.8732 eval: -0.2196 min: -0.6107 max: 2.1654 weight: 0.7685 eval: 0.1033 min: -0.6107 max: 2.1654 weight: 0.8820 eval: -0.2467 min: -0.6107 max: 2.1654 weight: 0.9015 eval: -0.3069 min: -0.6107 max: 2.1654 weight: 0.9736 eval: -0.5292 min: -0.6107 max: 2.1654 weight: 0.9533 eval: -0.4667 min: -0.6107 max: 2.1654 weight: 0.9368 eval: -0.4159 min: -0.6107 max: 2.1654 weight: 0.9342 eval: -0.4078 min: -0.6107 max: 2.1654 weight: 0.8556 eval: -0.1654 min: -0.6107 max: 2.1654 weight: 0.3956 eval: 1.2537 min: -0.6107 max: 2.1654 weight: 0.9634 eval: -0.4979 min: -0.6107 max: 2.1654 weight: 0.9618 eval: -0.4928 min: -0.6107 max: 2.1654 weight: 0.9649 eval: -0.5026 min: -0.6107 max: 2.1654 weight: 0.9844 eval: -0.5627 min: -0.6107 max: 2.1654 weight: 0.9794 eval: -0.5470 min: -0.6107 max: 2.1654 weight: 0.9618 eval: -0.4928 min: -0.6107 max: 2.1654 weight: 0.9602 eval: -0.4880 min: -0.6107 max: 2.1654 weight: 0.9649 eval: -0.5026 min: -0.6107 max: 2.1654 weight: 0.9612 eval: -0.4910 min: -0.6107 max: 2.1654 weight: 0.9844 eval: -0.5627 min: -0.6107 max: 2.1654 weight: 0.9952 eval: -0.5958 min: -0.6107 max: 2.1654 weight: 0.9968 eval: -0.6007 min: -0.6107 max: 2.1654 weight: 0.9975 eval: -0.6029 min: -0.6107 max: 2.1654 weight: 0.9736 eval: -0.5292 min: -0.6107 max: 2.1654 weight: 0.3831 eval: 1.2924 min: -0.6107 max: 2.1654 weight: 0.3927 eval: 1.2627 min: -0.6107 max: 2.1654 weight: 0.3852 eval: 1.2857 min: -0.6107 max: 2.1654 weight: 0.3838 eval: 1.2901 min: -0.6107 max: 2.1654 weight: 0.3934 eval: 1.2606 min: -0.6107 max: 2.1654 weight: 0.9718 eval: -0.5236 min: -0.6107 max: 2.1654 weight: 0.9669 eval: -0.5086 min: -0.6107 max: 2.1654 weight: 0.9630 eval: -0.4966 min: -0.6107 max: 2.1654 weight: 0.9742 eval: -0.5312 min: -0.6107 max: 2.1654 weight: 0.9753 eval: -0.5344 min: -0.6107 max: 2.1654 weight: 0.9582 eval: -0.4817 min: -0.6107 max: 2.1654 weight: 0.9594 eval: -0.4855 min: -0.6107 max: 2.1654 weight: 0.9644 eval: -0.5009 min: -0.6107 max: 2.1654 weight: 0.9497 eval: -0.4554 min: -0.6107 max: 2.1654 weight: 0.9686 eval: -0.5139 min: -0.6107 max: 2.1654 weight: 0.9565 eval: -0.4765 min: -0.6107 max: 2.1654 weight: 0.9698 eval: -0.5175 min: -0.6107 max: 2.1654 weight: 0.9499 eval: -0.4561 min: -0.6107 max: 2.1654 weight: 0.9499 eval: -0.4561 min: -0.6107 max: 2.1654 weight: 0.9499 eval: -0.4561 min: -0.6107 max: 2.1654 weight: 0.9499 eval: -0.4561 min: -0.6107 max: 2.1654 weight: 0.9704 eval: -0.5194 min: -0.6107 max: 2.1654 weight: 0.9660 eval: -0.5059 min: -0.6107 max: 2.1654 weight: 0.9442 eval: -0.4386 min: -0.6107 max: 2.1654 weight: 0.9262 eval: -0.3829 min: -0.6107 max: 2.1654 weight: 0.9609 eval: -0.4900 min: -0.6107 max: 2.1654 weight: 0.9532 eval: -0.4662 min: -0.6107 max: 2.1654 weight: 0.9753 eval: -0.5346 min: -0.6107 max: 2.1654 weight: 0.9544 eval: -0.4700 min: -0.6107 max: 2.1654 weight: 0.9540 eval: -0.4688 min: -0.6107 max: 2.1654 weight: 0.9755 eval: -0.5352 min: -0.6107 max: 2.1654 weight: 0.9506 eval: -0.4583 min: -0.6107 max: 2.1654 weight: 0.9649 eval: -0.5024 min: -0.6107 max: 2.1654 weight: 0.8613 eval: -0.1829 min: -0.6107 max: 2.1654 weight: 0.9616 eval: -0.4921 min: -0.6107 max: 2.1654 weight: 0.9450 eval: -0.4411 min: -0.6107 max: 2.1654 weight: 0.9687 eval: -0.5143 min: -0.6107 max: 2.1654 weight: 0.9609 eval: -0.4901 min: -0.6107 max: 2.1654 weight: 0.8763 eval: -0.2290 min: -0.6107 max: 2.1654 weight: 0.9646 eval: -0.5014 min: -0.6107 max: 2.1654 weight: 0.9496 eval: -0.4551 min: -0.6107 max: 2.1654 weight: 0.9688 eval: -0.5144 min: -0.6107 max: 2.1654 weight: 0.9689 eval: -0.5147 min: -0.6107 max: 2.1654 weight: 0.9660 eval: -0.5059 min: -0.6107 max: 2.1654 weight: 0.9664 eval: -0.5072 min: -0.6107 max: 2.1654 weight: 0.9262 eval: -0.3829 min: -0.6107 max: 2.1654 weight: 0.9497 eval: -0.4555 min: -0.6107 max: 2.1654 weight: 0.9278 eval: -0.3880 min: -0.6107 max: 2.1654 weight: 0.9592 eval: -0.4848 min: -0.6107 max: 2.1654 weight: 0.9715 eval: -0.5229 min: -0.6107 max: 2.1654 weight: 0.9373 eval: -0.4173 min: -0.6107 max: 2.1654 weight: 0.3958 eval: 1.2531 min: -0.6107 max: 2.1654 weight: 0.3951 eval: 1.2552 min: -0.6107 max: 2.1654 weight: 0.3958 eval: 1.2532 min: -0.6107 max: 2.1654 weight: 0.3956 eval: 1.2538 min: -0.6107 max: 2.1654 weight: 0.3956 eval: 1.2536 min: -0.6107 max: 2.1654 weight: 0.3954 eval: 1.2543 min: -0.6107 max: 2.1654 weight: 0.3958 eval: 1.2531 min: -0.6107 max: 2.1654 weight: 0.3954 eval: 1.2541 min: -0.6107 max: 2.1654 weight: 0.3957 eval: 1.2533 min: -0.6107 max: 2.1654 weight: 0.3954 eval: 1.2544 min: -0.6107 max: 2.1654 weight: 0.9652 eval: -0.5034 min: -0.6107 max: 2.1654 weight: 0.8758 eval: -0.2276 min: -0.6107 max: 2.1654 weight: 0.8222 eval: -0.0621 min: -0.6107 max: 2.1654 weight: 0.9468 eval: -0.4466 min: -0.6107 max: 2.1654 weight: 0.8049 eval: -0.0090 min: -0.6107 max: 2.1654 weight: 0.9612 eval: -0.4911 min: -0.6107 max: 2.1654 weight: 0.9672 eval: -0.5096 min: -0.6107 max: 2.1654 weight: 0.9720 eval: -0.5243 min: -0.6107 max: 2.1654 weight: 0.9260 eval: -0.3826 min: -0.6107 max: 2.1654 weight: 0.9605 eval: -0.4889 min: -0.6107 max: 2.1654 weight: 0.9563 eval: -0.4759 min: -0.6107 max: 2.1654 weight: 0.9701 eval: -0.5184 min: -0.6107 max: 2.1654 weight: 0.9686 eval: -0.5139 min: -0.6107 max: 2.1654 weight: 0.9369 eval: -0.4161 min: -0.6107 max: 2.1654 weight: 0.9621 eval: -0.4937 min: -0.6107 max: 2.1654 weight: 0.9612 eval: -0.4911 min: -0.6107 max: 2.1654 weight: 0.9720 eval: -0.5243 min: -0.6107 max: 2.1654 weight: 0.9672 eval: -0.5096 min: -0.6107 max: 2.1654 weight: 0.9393 eval: -0.4233 min: -0.6107 max: 2.1654 weight: 0.9620 eval: -0.4934 min: -0.6107 max: 2.1654 weight: 0.3958 eval: 1.2532 min: -0.6107 max: 2.1654 weight: 0.3950 eval: 1.2556 min: -0.6107 max: 2.1654 weight: 0.3951 eval: 1.2552 min: -0.6107 max: 2.1654 weight: 0.3956 eval: 1.2537 min: -0.6107 max: 2.1654 weight: 0.3958 eval: 1.2531 min: -0.6107 max: 2.1654 weight: 0.9264 eval: -0.3835 min: -0.6107 max: 2.1654 weight: 0.3958 eval: 1.2532 min: -0.6107 max: 2.1654 weight: 0.3950 eval: 1.2556 min: -0.6107 max: 2.1654 weight: 0.3951 eval: 1.2552 min: -0.6107 max: 2.1654 weight: 0.3956 eval: 1.2537 min: -0.6107 max: 2.1654 weight: 0.3958 eval: 1.2531 min: -0.6107 max: 2.1654 weight: 0.9912 eval: -0.5834 min: -0.6107 max: 2.1654 weight: 0.9918 eval: -0.5855 min: -0.6107 max: 2.1654 weight: 0.9897 eval: -0.5788 min: -0.6107 max: 2.1654 weight: 0.9943 eval: -0.5932 min: -0.6107 max: 2.1654 weight: 1.0000 eval: -0.6107 min: -0.6107 max: 2.1654 weight: 0.9581 eval: -0.4815 min: -0.6107 max: 2.1654 weight: 0.9575 eval: -0.4794 min: -0.6107 max: 2.1654 weight: 0.3950 eval: 1.2556 min: -0.6107 max: 2.1654 weight: 0.3956 eval: 1.2537 min: -0.6107 max: 2.1654 weight: 0.3953 eval: 1.2547 min: -0.6107 max: 2.1654 weight: 0.3956 eval: 1.2538 min: -0.6107 max: 2.1654 weight: 0.3951 eval: 1.2551 min: -0.6107 max: 2.1654 weight: 0.9637 eval: -0.4987 min: -0.6107 max: 2.1654 weight: 0.9830 eval: -0.5583 min: -0.6107 max: 2.1654 weight: 0.9787 eval: -0.5450 min: -0.6107 max: 2.1654 weight: 0.9581 eval: -0.4814 min: -0.6107 max: 2.1654 weight: 0.9622 eval: -0.4941 min: -0.6107 max: 2.1654 weight: 0.9625 eval: -0.4950 min: -0.6107 max: 2.1654 weight: 0.9654 eval: -0.5039 min: -0.6107 max: 2.1654 weight: 0.8736 eval: -0.2209 min: -0.6107 max: 2.1654 weight: 0.8420 eval: -0.1234 min: -0.6107 max: 2.1654 weight: 0.8639 eval: -0.1908 min: -0.6107 max: 2.1654 weight: 0.9585 eval: -0.4827 min: -0.6107 max: 2.1654 weight: 0.9313 eval: -0.3986 min: -0.6107 max: 2.1654 weight: 0.9628 eval: -0.4959 min: -0.6107 max: 2.1654 weight: 0.9635 eval: -0.4980 min: -0.6107 max: 2.1654 weight: 0.9582 eval: -0.4817 min: -0.6107 max: 2.1654 weight: 0.9881 eval: -0.5741 min: -0.6107 max: 2.1654 weight: 0.9167 eval: -0.3539 min: -0.6107 max: 2.1654 weight: 0.9491 eval: -0.4535 min: -0.6107 max: 2.1654 weight: 0.9226 eval: -0.3720 min: -0.6107 max: 2.1654 weight: 0.9612 eval: -0.4909 min: -0.6107 max: 2.1654 weight: 0.9124 eval: -0.3406 min: -0.6107 max: 2.1654 weight: 0.8902 eval: -0.2721 min: -0.6107 max: 2.1654 weight: 0.7451 eval: 0.1755 min: -0.6107 max: 2.1654 weight: 0.9703 eval: -0.5191 min: -0.6107 max: 2.1654 Adding 2476 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -226.1294, CN propb: -226.1294 weights: 0.3599 constraints: 234 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 234 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 234 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 2242 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 2242 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 2476 # command: