# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0372/ # command:# Making conformation for sequence T0372 numbered 1 through 305 Created new target T0372 from T0372.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0372/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0372//projects/compbio/experiments/protein-predict/casp7/T0372/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0372//projects/compbio/experiments/protein-predict/casp7/T0372/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0372/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0372/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0372)E167.CB, (T0372)I217.CB) [> 2.7765 = 4.6275 < 6.0158] w=1.0000 to align # Constraint # added constraint: constraint((T0372)T221.CB, (T0372)I249.CB) [> 2.7539 = 4.5898 < 5.9668] w=0.9981 to align # Constraint # added constraint: constraint((T0372)T221.CB, (T0372)V235.CB) [> 3.6900 = 6.1500 < 7.9950] w=0.9981 to align # Constraint # added constraint: constraint((T0372)A219.CB, (T0372)A245.CB) [> 3.4825 = 5.8042 < 7.5455] w=0.9981 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)F220.CB) [> 3.3472 = 5.5787 < 7.2523] w=0.9943 to align # Constraint # added constraint: constraint((T0372)I210.CB, (T0372)F220.CB) [> 3.2483 = 5.4138 < 7.0380] w=0.9828 to align # Constraint # added constraint: constraint((T0372)T221.CB, (T0372)F253.CB) [> 3.1883 = 5.3139 < 6.9081] w=0.9809 to align # Constraint # added constraint: constraint((T0372)A219.CB, (T0372)I249.CB) [> 3.7607 = 6.2678 < 8.1482] w=0.9809 to align # Constraint # added constraint: constraint((T0372)Y157.CB, (T0372)L211.CB) [> 3.5341 = 5.8902 < 7.6573] w=0.9663 to align # Constraint # added constraint: constraint((T0372)G209.CA, (T0372)F220.CB) [> 3.3237 = 5.5395 < 7.2014] w=0.9660 to align # Constraint # added constraint: constraint((T0372)Y157.CB, (T0372)E252.CB) [> 3.2058 = 5.3430 < 6.9460] w=0.9644 to align # Constraint # added constraint: constraint((T0372)A219.CB, (T0372)A238.CB) [> 2.8352 = 4.7253 < 6.1429] w=0.9628 to align # Constraint # added constraint: constraint((T0372)T158.CB, (T0372)G209.CA) [> 3.9049 = 6.5082 < 8.4606] w=0.9494 to align # Constraint # added constraint: constraint((T0372)Y157.CB, (T0372)G209.CA) [> 3.9016 = 6.5026 < 8.4534] w=0.9494 to align # Constraint # added constraint: constraint((T0372)Y157.CB, (T0372)I210.CB) [> 4.1063 = 6.8438 < 8.8969] w=0.9494 to align # Constraint # added constraint: constraint((T0372)P159.CB, (T0372)G209.CA) [> 3.6354 = 6.0591 < 7.8768] w=0.9491 to align # Constraint # added constraint: constraint((T0372)I210.CB, (T0372)A219.CB) [> 4.2189 = 7.0315 < 9.1409] w=0.9488 to align # Constraint # added constraint: constraint((T0372)G209.CA, (T0372)T221.CB) [> 3.3921 = 5.6534 < 7.3495] w=0.9488 to align # Constraint # added constraint: constraint((T0372)G223.CA, (T0372)V233.CB) [> 3.4422 = 5.7370 < 7.4581] w=0.9466 to align # Constraint # added constraint: constraint((T0372)F220.CB, (T0372)I249.CB) [> 4.3638 = 7.2730 < 9.4549] w=0.9294 to align # Constraint # added constraint: constraint((T0372)V218.CB, (T0372)A245.CB) [> 3.6209 = 6.0348 < 7.8453] w=0.9294 to align # Constraint # added constraint: constraint((T0372)V218.CB, (T0372)A238.CB) [> 3.7798 = 6.2996 < 8.1895] w=0.9285 to align # Constraint # added constraint: constraint((T0372)E156.CB, (T0372)L211.CB) [> 4.1850 = 6.9749 < 9.0674] w=0.9161 to align # Constraint # added constraint: constraint((T0372)G223.CA, (T0372)H234.CB) [> 3.4892 = 5.8153 < 7.5599] w=0.9130 to align # Constraint # added constraint: constraint((T0372)G209.CA, (T0372)I249.CB) [> 4.1799 = 6.9665 < 9.0564] w=0.9126 to align # Constraint # added constraint: constraint((T0372)F222.CB, (T0372)V235.CB) [> 3.3040 = 5.5066 < 7.1586] w=0.9084 to align # Constraint # added constraint: constraint((T0372)I160.CB, (T0372)G209.CA) [> 3.2912 = 5.4854 < 7.1310] w=0.8975 to align # Constraint # added constraint: constraint((T0372)I160.CB, (T0372)F220.CB) [> 4.2242 = 7.0403 < 9.1524] w=0.8805 to align # Constraint # added constraint: constraint((T0372)T221.CB, (T0372)N250.CB) [> 4.1126 = 6.8543 < 8.9106] w=0.8779 to align # Constraint # added constraint: constraint((T0372)F220.CB, (T0372)V235.CB) [> 4.3220 = 7.2033 < 9.3643] w=0.8768 to align # Constraint # added constraint: constraint((T0372)F220.CB, (T0372)E236.CB) [> 4.1167 = 6.8612 < 8.9195] w=0.8600 to align # Constraint # added constraint: constraint((T0372)A219.CB, (T0372)K237.CB) [> 3.0185 = 5.0309 < 6.5402] w=0.8596 to align # Constraint # added constraint: constraint((T0372)L171.CB, (T0372)I217.CB) [> 3.8651 = 6.4419 < 8.3745] w=0.8574 to align # Constraint # added constraint: constraint((T0372)L171.CB, (T0372)F220.CB) [> 3.6246 = 6.0410 < 7.8534] w=0.8574 to align # Constraint # added constraint: constraint((T0372)G223.CA, (T0372)F253.CB) [> 3.7762 = 6.2936 < 8.1817] w=0.8524 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)I217.CB) [> 4.0507 = 6.7512 < 8.7766] w=0.8453 to align # Constraint # added constraint: constraint((T0372)R164.CB, (T0372)I217.CB) [> 3.7817 = 6.3028 < 8.1937] w=0.8452 to align # Constraint # added constraint: constraint((T0372)V233.CB, (T0372)F253.CB) [> 3.7377 = 6.2295 < 8.0984] w=0.8425 to align # Constraint # added constraint: constraint((T0372)G223.CA, (T0372)G232.CA) [> 3.2593 = 5.4321 < 7.0617] w=0.8425 to align # Constraint # added constraint: constraint((T0372)A219.CB, (T0372)Y246.CB) [> 4.2323 = 7.0538 < 9.1699] w=0.8275 to align # Constraint # added constraint: constraint((T0372)F222.CB, (T0372)V233.CB) [> 4.3844 = 7.3074 < 9.4996] w=0.8234 to align # Constraint # added constraint: constraint((T0372)F222.CB, (T0372)H234.CB) [> 2.7583 = 4.5972 < 5.9764] w=0.8085 to align # Constraint # added constraint: constraint((T0372)T158.CB, (T0372)I210.CB) [> 3.4345 = 5.7242 < 7.4414] w=0.7961 to align # Constraint # added constraint: constraint((T0372)P159.CB, (T0372)I210.CB) [> 4.5514 = 7.5857 < 9.8614] w=0.7958 to align # Constraint # added constraint: constraint((T0372)T158.CB, (T0372)H212.CB) [> 4.1360 = 6.8932 < 8.9612] w=0.7958 to align # Constraint # added constraint: constraint((T0372)L211.CB, (T0372)A245.CB) [> 3.1790 = 5.2984 < 6.8879] w=0.7936 to align # Constraint # added constraint: constraint((T0372)L211.CB, (T0372)I249.CB) [> 3.4081 = 5.6802 < 7.3842] w=0.7933 to align # Constraint # added constraint: constraint((T0372)T221.CB, (T0372)E236.CB) [> 3.2446 = 5.4076 < 7.0299] w=0.7889 to align # Constraint # added constraint: constraint((T0372)L206.CB, (T0372)G223.CA) [> 3.6890 = 6.1483 < 7.9927] w=0.7838 to align # Constraint # added constraint: constraint((T0372)T221.CB, (T0372)V233.CB) [> 3.9211 = 6.5352 < 8.4957] w=0.7737 to align # Constraint # added constraint: constraint((T0372)R164.CB, (T0372)I210.CB) [> 3.5696 = 5.9494 < 7.7342] w=0.7613 to align # Constraint # added constraint: constraint((T0372)Y157.CB, (T0372)I249.CB) [> 3.9087 = 6.5144 < 8.4688] w=0.7587 to align # Constraint # added constraint: constraint((T0372)I160.CB, (T0372)I210.CB) [> 3.0706 = 5.1176 < 6.6529] w=0.7442 to align # Constraint # added constraint: constraint((T0372)G209.CA, (T0372)F222.CB) [> 4.4125 = 7.3542 < 9.5604] w=0.7438 to align # Constraint # added constraint: constraint((T0372)F231.CB, (T0372)I257.CB) [> 2.8142 = 4.6903 < 6.0974] w=0.7399 to align # Constraint # added constraint: constraint((T0372)W175.CB, (T0372)K237.CB) [> 3.1806 = 5.3010 < 6.8913] w=0.7390 to align # Constraint # added constraint: constraint((T0372)M224.CB, (T0372)H234.CB) [> 3.4034 = 5.6723 < 7.3740] w=0.7385 to align # Constraint # added constraint: constraint((T0372)A219.CB, (T0372)D239.CB) [> 3.5597 = 5.9328 < 7.7127] w=0.7383 to align # Constraint # added constraint: constraint((T0372)F220.CB, (T0372)K237.CB) [> 3.8492 = 6.4153 < 8.3399] w=0.7372 to align # Constraint # added constraint: constraint((T0372)A219.CB, (T0372)E236.CB) [> 3.9353 = 6.5588 < 8.5265] w=0.7369 to align # Constraint # added constraint: constraint((T0372)V218.CB, (T0372)D239.CB) [> 3.0797 = 5.1329 < 6.6728] w=0.7231 to align # Constraint # added constraint: constraint((T0372)P159.CB, (T0372)T207.CB) [> 4.0091 = 6.6818 < 8.6864] w=0.7161 to align # Constraint # added constraint: constraint((T0372)Y157.CB, (T0372)M248.CB) [> 3.4473 = 5.7455 < 7.4691] w=0.7153 to align # Constraint # added constraint: constraint((T0372)Y157.CB, (T0372)H212.CB) [> 4.5677 = 7.6129 < 9.8968] w=0.7105 to align # Constraint # added constraint: constraint((T0372)G208.CA, (T0372)T221.CB) [> 3.7597 = 6.2662 < 8.1461] w=0.7095 to align # Constraint # added constraint: constraint((T0372)G208.CA, (T0372)F220.CB) [> 3.9989 = 6.6648 < 8.6643] w=0.7095 to align # Constraint # added constraint: constraint((T0372)G208.CA, (T0372)F222.CB) [> 3.0840 = 5.1399 < 6.6819] w=0.7092 to align # Constraint # added constraint: constraint((T0372)L206.CB, (T0372)F222.CB) [> 3.7485 = 6.2475 < 8.1218] w=0.6980 to align # Constraint # added constraint: constraint((T0372)T221.CB, (T0372)E252.CB) [> 4.3254 = 7.2090 < 9.3717] w=0.6976 to align # Constraint # added constraint: constraint((T0372)I160.CB, (T0372)G208.CA) [> 2.9249 = 4.8749 < 6.3373] w=0.6929 to align # Constraint # added constraint: constraint((T0372)P159.CB, (T0372)G208.CA) [> 3.7987 = 6.3312 < 8.2306] w=0.6929 to align # Constraint # added constraint: constraint((T0372)G208.CA, (T0372)G223.CA) [> 3.7787 = 6.2979 < 8.1873] w=0.6923 to align # Constraint # added constraint: constraint((T0372)G209.CA, (T0372)E252.CB) [> 4.1680 = 6.9466 < 9.0306] w=0.6907 to align # Constraint # added constraint: constraint((T0372)L171.CB, (T0372)D239.CB) [> 3.8633 = 6.4388 < 8.3705] w=0.6854 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)I210.CB) [> 4.2860 = 7.1433 < 9.2863] w=0.6817 to align # Constraint # added constraint: constraint((T0372)Y155.CB, (T0372)L211.CB) [> 3.6958 = 6.1597 < 8.0076] w=0.6742 to align # Constraint # added constraint: constraint((T0372)T207.CB, (T0372)G223.CA) [> 3.4979 = 5.8298 < 7.5787] w=0.6686 to align # Constraint # added constraint: constraint((T0372)T207.CB, (T0372)F222.CB) [> 4.1411 = 6.9019 < 8.9725] w=0.6679 to align # Constraint # added constraint: constraint((T0372)Y155.CB, (T0372)H212.CB) [> 4.1207 = 6.8679 < 8.9283] w=0.6570 to align # Constraint # added constraint: constraint((T0372)F222.CB, (T0372)E236.CB) [> 4.1539 = 6.9231 < 9.0000] w=0.6503 to align # Constraint # added constraint: constraint((T0372)E174.CB, (T0372)D239.CB) [> 3.7030 = 6.1716 < 8.0231] w=0.6353 to align # Constraint # added constraint: constraint((T0372)G232.CA, (T0372)I264.CB) [> 3.7244 = 6.2073 < 8.0694] w=0.6195 to align # Constraint # added constraint: constraint((T0372)T230.CB, (T0372)Y261.CB) [> 3.6698 = 6.1164 < 7.9513] w=0.6189 to align # Constraint # added constraint: constraint((T0372)F231.CB, (T0372)Y261.CB) [> 2.9252 = 4.8754 < 6.3380] w=0.6185 to align # Constraint # added constraint: constraint((T0372)G209.CA, (T0372)F253.CB) [> 4.2868 = 7.1447 < 9.2881] w=0.6063 to align # Constraint # added constraint: constraint((T0372)T230.CB, (T0372)Y263.CB) [> 3.0946 = 5.1577 < 6.7050] w=0.6019 to align # Constraint # added constraint: constraint((T0372)E236.CB, (T0372)Y246.CB) [> 3.9241 = 6.5401 < 8.5021] w=0.6001 to align # Constraint # added constraint: constraint((T0372)E236.CB, (T0372)N250.CB) [> 4.0693 = 6.7821 < 8.8167] w=0.5833 to align # Constraint # added constraint: constraint((T0372)E172.CB, (T0372)K237.CB) [> 3.9142 = 6.5236 < 8.4807] w=0.5828 to align # Constraint # added constraint: constraint((T0372)T207.CB, (T0372)R256.CB) [> 3.8152 = 6.3587 < 8.2664] w=0.5790 to align # Constraint # added constraint: constraint((T0372)Y155.CB, (T0372)V213.CB) [> 3.4536 = 5.7560 < 7.4828] w=0.5713 to align # Constraint # added constraint: constraint((T0372)G223.CA, (T0372)V235.CB) [> 4.2701 = 7.1168 < 9.2519] w=0.5686 to align # Constraint # added constraint: constraint((T0372)E167.CB, (T0372)K216.CB) [> 4.2087 = 7.0145 < 9.1188] w=0.5671 to align # Constraint # added constraint: constraint((T0372)Y155.CB, (T0372)A245.CB) [> 3.8843 = 6.4739 < 8.4160] w=0.5639 to align # Constraint # added constraint: constraint((T0372)L206.CB, (T0372)M224.CB) [> 3.3520 = 5.5867 < 7.2627] w=0.5619 to align # Constraint # added constraint: constraint((T0372)I165.CB, (T0372)I195.CB) [> 3.3962 = 5.6603 < 7.3584] w=0.5510 to align # Constraint # added constraint: constraint((T0372)F231.CB, (T0372)Y263.CB) [> 4.2086 = 7.0143 < 9.1186] w=0.5501 to align # Constraint # added constraint: constraint((T0372)L169.CB, (T0372)G186.CA) [> 3.9825 = 6.6376 < 8.6288] w=0.5499 to align # Constraint # added constraint: constraint((T0372)E172.CB, (T0372)V235.CB) [> 4.1935 = 6.9892 < 9.0860] w=0.5486 to align # Constraint # added constraint: constraint((T0372)I160.CB, (T0372)T207.CB) [> 4.0355 = 6.7259 < 8.7436] w=0.5465 to align # Constraint # added constraint: constraint((T0372)V218.CB, (T0372)S241.CB) [> 3.9398 = 6.5663 < 8.5362] w=0.5359 to align # Constraint # added constraint: constraint((T0372)T230.CB, (T0372)I262.CB) [> 4.0901 = 6.8169 < 8.8620] w=0.5337 to align # Constraint # added constraint: constraint((T0372)V233.CB, (T0372)I264.CB) [> 3.6669 = 6.1115 < 7.9450] w=0.5335 to align # Constraint # added constraint: constraint((T0372)T230.CB, (T0372)I264.CB) [> 4.1885 = 6.9808 < 9.0750] w=0.5171 to align # Constraint # added constraint: constraint((T0372)F231.CB, (T0372)I264.CB) [> 2.8373 = 4.7289 < 6.1475] w=0.5164 to align # Constraint # added constraint: constraint((T0372)L169.CB, (T0372)T187.CB) [> 3.9283 = 6.5471 < 8.5112] w=0.5159 to align # Constraint # added constraint: constraint((T0372)G232.CA, (T0372)I257.CB) [> 4.3308 = 7.2181 < 9.3835] w=0.5127 to align # Constraint # added constraint: constraint((T0372)Y155.CB, (T0372)M248.CB) [> 3.8854 = 6.4756 < 8.4183] w=0.5124 to align # Constraint # added constraint: constraint((T0372)V218.CB, (T0372)I242.CB) [> 2.7588 = 4.5980 < 5.9773] w=0.4819 to align # Constraint # added constraint: constraint((T0372)G232.CA, (T0372)N265.CB) [> 3.1088 = 5.1812 < 6.7356] w=0.4775 to align # Constraint # added constraint: constraint((T0372)A219.CB, (T0372)I242.CB) [> 4.0588 = 6.7646 < 8.7940] w=0.4648 to align # Constraint # added constraint: constraint((T0372)Y155.CB, (T0372)V218.CB) [> 4.1634 = 6.9390 < 9.0206] w=0.4615 to align # Constraint # added constraint: constraint((T0372)W175.CB, (T0372)A238.CB) [> 4.0716 = 6.7860 < 8.8217] w=0.4485 to align # Constraint # added constraint: constraint((T0372)E167.CB, (T0372)I210.CB) [> 4.1772 = 6.9620 < 9.0507] w=0.4434 to align # Constraint # added constraint: constraint((T0372)F231.CB, (T0372)N265.CB) [> 4.0619 = 6.7699 < 8.8009] w=0.4432 to align # Constraint # added constraint: constraint((T0372)E172.CB, (T0372)F220.CB) [> 4.3815 = 7.3026 < 9.4934] w=0.4429 to align # Constraint # added constraint: constraint((T0372)I165.CB, (T0372)L198.CB) [> 3.6296 = 6.0494 < 7.8642] w=0.4370 to align # Constraint # added constraint: constraint((T0372)I165.CB, (T0372)L194.CB) [> 3.4838 = 5.8063 < 7.5482] w=0.4308 to align # Constraint # added constraint: constraint((T0372)T221.CB, (T0372)K237.CB) [> 4.4882 = 7.4803 < 9.7244] w=0.4284 to align # Constraint # added constraint: constraint((T0372)L204.CB, (T0372)P225.CB) [> 4.0252 = 6.7086 < 8.7212] w=0.4218 to align # Constraint # added constraint: constraint((T0372)W175.CB, (T0372)D239.CB) [> 3.8079 = 6.3465 < 8.2505] w=0.4153 to align # Constraint # added constraint: constraint((T0372)I165.CB, (T0372)R191.CB) [> 3.4641 = 5.7735 < 7.5055] w=0.4091 to align # Constraint # added constraint: constraint((T0372)G205.CA, (T0372)M224.CB) [> 3.7232 = 6.2053 < 8.0669] w=0.3916 to align # Constraint # added constraint: constraint((T0372)V233.CB, (T0372)N265.CB) [> 4.3747 = 7.2912 < 9.4786] w=0.3915 to align # Constraint # added constraint: constraint((T0372)L206.CB, (T0372)P225.CB) [> 4.1577 = 6.9295 < 9.0083] w=0.3764 to align # Constraint # added constraint: constraint((T0372)L169.CB, (T0372)R191.CB) [> 3.6241 = 6.0402 < 7.8522] w=0.3750 to align # Constraint # added constraint: constraint((T0372)L204.CB, (T0372)G223.CA) [> 3.1297 = 5.2162 < 6.7811] w=0.3703 to align # Constraint # added constraint: constraint((T0372)L204.CB, (T0372)M224.CB) [> 3.6146 = 6.0243 < 7.8316] w=0.3695 to align # Constraint # added constraint: constraint((T0372)L169.CB, (T0372)L194.CB) [> 3.3764 = 5.6273 < 7.3155] w=0.3624 to align # Constraint # added constraint: constraint((T0372)T221.CB, (T0372)H234.CB) [> 4.1601 = 6.9335 < 9.0135] w=0.3621 to align # Constraint # added constraint: constraint((T0372)C176.CB, (T0372)K237.CB) [> 4.1188 = 6.8646 < 8.9240] w=0.3616 to align # Constraint # added constraint: constraint((T0372)G223.CA, (T0372)I257.CB) [> 4.0424 = 6.7374 < 8.7586] w=0.3578 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)L194.CB) [> 3.7917 = 6.3194 < 8.2153] w=0.3459 to align # Constraint # added constraint: constraint((T0372)W175.CB, (T0372)A219.CB) [> 4.0395 = 6.7324 < 8.7521] w=0.3253 to align # Constraint # added constraint: constraint((T0372)T207.CB, (T0372)T221.CB) [> 3.5187 = 5.8646 < 7.6239] w=0.3246 to align # Constraint # added constraint: constraint((T0372)G205.CA, (T0372)P225.CB) [> 3.2559 = 5.4265 < 7.0544] w=0.3241 to align # Constraint # added constraint: constraint((T0372)R164.CB, (T0372)F220.CB) [> 4.5772 = 7.6286 < 9.9172] w=0.3188 to align # Constraint # added constraint: constraint((T0372)I160.CB, (T0372)L198.CB) [> 3.8054 = 6.3424 < 8.2451] w=0.3142 to align # Constraint # added constraint: constraint((T0372)F201.CB, (T0372)M224.CB) [> 3.7406 = 6.2343 < 8.1046] w=0.2983 to align # Constraint # added constraint: constraint((T0372)I160.CB, (T0372)E202.CB) [> 3.9334 = 6.5556 < 8.5223] w=0.2983 to align # Constraint # added constraint: constraint((T0372)I217.CB, (T0372)D239.CB) [> 4.3749 = 7.2916 < 9.4791] w=0.2963 to align # Constraint # added constraint: constraint((T0372)I160.CB, (T0372)F201.CB) [> 4.3044 = 7.1741 < 9.3263] w=0.2940 to align # Constraint # added constraint: constraint((T0372)I226.CB, (T0372)N265.CB) [> 3.9069 = 6.5116 < 8.4650] w=0.2913 to align # Constraint # added constraint: constraint((T0372)F231.CB, (T0372)F253.CB) [> 3.9740 = 6.6233 < 8.6103] w=0.2904 to align # Constraint # added constraint: constraint((T0372)Y246.CB, (T0372)K290.CB) [> 3.6204 = 6.0339 < 7.8441] w=0.2901 to align # Constraint # added constraint: constraint((T0372)E229.CB, (T0372)Y263.CB) [> 3.4760 = 5.7933 < 7.5313] w=0.2893 to align # Constraint # added constraint: constraint((T0372)D154.CB, (T0372)V213.CB) [> 4.1192 = 6.8653 < 8.9249] w=0.2794 to align # Constraint # added constraint: constraint((T0372)V218.CB, (T0372)K237.CB) [> 4.0345 = 6.7241 < 8.7413] w=0.2763 to align # Constraint # added constraint: constraint((T0372)L169.CB, (T0372)E190.CB) [> 3.1192 = 5.1987 < 6.7583] w=0.2761 to align # Constraint # added constraint: constraint((T0372)E172.CB, (T0372)E236.CB) [> 3.6433 = 6.0722 < 7.8939] w=0.2753 to align # Constraint # added constraint: constraint((T0372)V235.CB, (T0372)F253.CB) [> 4.0293 = 6.7155 < 8.7302] w=0.2751 to align # Constraint # added constraint: constraint((T0372)A219.CB, (T0372)V235.CB) [> 4.1201 = 6.8669 < 8.9269] w=0.2746 to align # Constraint # added constraint: constraint((T0372)T207.CB, (T0372)F220.CB) [> 4.0129 = 6.6882 < 8.6947] w=0.2734 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)G208.CA) [> 4.3067 = 7.1778 < 9.3312] w=0.2724 to align # Constraint # added constraint: constraint((T0372)L194.CB, (T0372)F222.CB) [> 3.9198 = 6.5330 < 8.4929] w=0.2623 to align # Constraint # added constraint: constraint((T0372)I160.CB, (T0372)G205.CA) [> 4.4705 = 7.4509 < 9.6862] w=0.2604 to align # Constraint # added constraint: constraint((T0372)F231.CB, (T0372)A254.CB) [> 4.6162 = 7.6937 < 10.0018] w=0.2588 to align # Constraint # added constraint: constraint((T0372)V233.CB, (T0372)I257.CB) [> 3.5342 = 5.8903 < 7.6574] w=0.2579 to align # Constraint # added constraint: constraint((T0372)G205.CA, (T0372)F222.CB) [> 4.0633 = 6.7722 < 8.8038] w=0.2425 to align # Constraint # added constraint: constraint((T0372)I160.CB, (T0372)L206.CB) [> 2.4263 = 4.0438 < 5.2569] w=0.2395 to align # Constraint # added constraint: constraint((T0372)G205.CA, (T0372)G223.CA) [> 3.3347 = 5.5579 < 7.2252] w=0.2387 to align # Constraint # added constraint: constraint((T0372)F201.CB, (T0372)G223.CA) [> 3.7251 = 6.2086 < 8.0711] w=0.2295 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)F222.CB) [> 4.2152 = 7.0253 < 9.1329] w=0.2275 to align # Constraint # added constraint: constraint((T0372)F201.CB, (T0372)F222.CB) [> 3.4897 = 5.8161 < 7.5609] w=0.2253 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)R191.CB) [> 4.0580 = 6.7633 < 8.7923] w=0.2217 to align # Constraint # added constraint: constraint((T0372)I160.CB, (T0372)F222.CB) [> 4.4577 = 7.4294 < 9.6583] w=0.2171 to align # Constraint # added constraint: constraint((T0372)L198.CB, (T0372)F222.CB) [> 4.5087 = 7.5145 < 9.7688] w=0.2113 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)E190.CB) [> 4.2389 = 7.0649 < 9.1844] w=0.2078 to align # Constraint # added constraint: constraint((T0372)E172.CB, (T0372)C181.CB) [> 3.7795 = 6.2992 < 8.1889] w=0.2067 to align # Constraint # added constraint: constraint((T0372)V213.CB, (T0372)A245.CB) [> 4.1707 = 6.9511 < 9.0365] w=0.2059 to align # Constraint # added constraint: constraint((T0372)F45.CB, (T0372)F54.CB) [> 3.8475 = 6.4126 < 8.3364] w=0.2058 to align # Constraint # added constraint: constraint((T0372)V178.CB, (T0372)D239.CB) [> 4.0609 = 6.7681 < 8.7985] w=0.2054 to align # Constraint # added constraint: constraint((T0372)L62.CB, (T0372)F91.CB) [> 3.9300 = 6.5499 < 8.5149] w=0.2047 to align # Constraint # added constraint: constraint((T0372)T43.CB, (T0372)F56.CB) [> 3.6968 = 6.1613 < 8.0097] w=0.2046 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)L198.CB) [> 4.1809 = 6.9681 < 9.0586] w=0.2036 to align # Constraint # added constraint: constraint((T0372)R164.CB, (T0372)H212.CB) [> 4.5275 = 7.5458 < 9.8096] w=0.2035 to align # Constraint # added constraint: constraint((T0372)E156.CB, (T0372)G215.CA) [> 4.3377 = 7.2295 < 9.3984] w=0.1999 to align # Constraint # added constraint: constraint((T0372)T187.CB, (T0372)Y196.CB) [> 3.6297 = 6.0495 < 7.8643] w=0.1901 to align # Constraint # added constraint: constraint((T0372)I48.CB, (T0372)V76.CB) [> 3.9821 = 6.6368 < 8.6278] w=0.1886 to align # Constraint # added constraint: constraint((T0372)I7.CB, (T0372)F45.CB) [> 3.2431 = 5.4052 < 7.0268] w=0.1886 to align # Constraint # added constraint: constraint((T0372)V213.CB, (T0372)I242.CB) [> 4.2803 = 7.1338 < 9.2740] w=0.1886 to align # Constraint # added constraint: constraint((T0372)L280.CB, (T0372)Y291.CB) [> 4.1521 = 6.9202 < 8.9962] w=0.1882 to align # Constraint # added constraint: constraint((T0372)L52.CB, (T0372)P67.CB) [> 3.7359 = 6.2265 < 8.0945] w=0.1882 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)I195.CB) [> 4.2566 = 7.0943 < 9.2227] w=0.1879 to align # Constraint # added constraint: constraint((T0372)G209.CA, (T0372)A219.CB) [> 3.9364 = 6.5607 < 8.5289] w=0.1876 to align # Constraint # added constraint: constraint((T0372)T43.CB, (T0372)K55.CB) [> 3.5360 = 5.8934 < 7.6614] w=0.1875 to align # Constraint # added constraint: constraint((T0372)L62.CB, (T0372)C92.CB) [> 3.4157 = 5.6929 < 7.4007] w=0.1875 to align # Constraint # added constraint: constraint((T0372)A63.CB, (T0372)M93.CB) [> 3.4796 = 5.7994 < 7.5392] w=0.1875 to align # Constraint # added constraint: constraint((T0372)T158.CB, (T0372)L211.CB) [> 3.9936 = 6.6560 < 8.6528] w=0.1874 to align # Constraint # added constraint: constraint((T0372)Y157.CB, (T0372)Y251.CB) [> 4.6123 = 7.6872 < 9.9933] w=0.1870 to align # Constraint # added constraint: constraint((T0372)L198.CB, (T0372)G208.CA) [> 4.3485 = 7.2474 < 9.4217] w=0.1769 to align # Constraint # added constraint: constraint((T0372)L204.CB, (T0372)F231.CB) [> 4.0786 = 6.7977 < 8.8370] w=0.1762 to align # Constraint # added constraint: constraint((T0372)E172.CB, (T0372)Q184.CB) [> 3.4982 = 5.8304 < 7.5795] w=0.1727 to align # Constraint # added constraint: constraint((T0372)A63.CB, (T0372)F91.CB) [> 3.2882 = 5.4804 < 7.1245] w=0.1716 to align # Constraint # added constraint: constraint((T0372)A46.CB, (T0372)L80.CB) [> 4.3594 = 7.2657 < 9.4454] w=0.1715 to align # Constraint # added constraint: constraint((T0372)G186.CA, (T0372)I195.CB) [> 3.7327 = 6.2212 < 8.0875] w=0.1714 to align # Constraint # added constraint: constraint((T0372)E172.CB, (T0372)L194.CB) [> 4.1736 = 6.9561 < 9.0429] w=0.1708 to align # Constraint # added constraint: constraint((T0372)T158.CB, (T0372)T207.CB) [> 4.3689 = 7.2814 < 9.4658] w=0.1707 to align # Constraint # added constraint: constraint((T0372)Y157.CB, (T0372)T207.CB) [> 3.5899 = 5.9832 < 7.7782] w=0.1707 to align # Constraint # added constraint: constraint((T0372)A197.CB, (T0372)L206.CB) [> 3.8099 = 6.3499 < 8.2549] w=0.1706 to align # Constraint # added constraint: constraint((T0372)A63.CB, (T0372)C92.CB) [> 4.3586 = 7.2643 < 9.4436] w=0.1703 to align # Constraint # added constraint: constraint((T0372)L62.CB, (T0372)M93.CB) [> 4.4475 = 7.4125 < 9.6362] w=0.1703 to align # Constraint # added constraint: constraint((T0372)G232.CA, (T0372)L270.CB) [> 3.6439 = 6.0731 < 7.8950] w=0.1694 to align # Constraint # added constraint: constraint((T0372)T161.CB, (T0372)L198.CB) [> 4.1946 = 6.9910 < 9.0883] w=0.1618 to align # Constraint # added constraint: constraint((T0372)F220.CB, (T0372)H234.CB) [> 4.4475 = 7.4125 < 9.6363] w=0.1569 to align # Constraint # added constraint: constraint((T0372)L169.CB, (T0372)Q184.CB) [> 3.9349 = 6.5581 < 8.5255] w=0.1554 to align # Constraint # added constraint: constraint((T0372)E172.CB, (T0372)H234.CB) [> 4.2541 = 7.0902 < 9.2173] w=0.1550 to align # Constraint # added constraint: constraint((T0372)F51.CB, (T0372)G69.CA) [> 4.0365 = 6.7275 < 8.7457] w=0.1539 to align # Constraint # added constraint: constraint((T0372)Y64.CB, (T0372)G95.CA) [> 4.1419 = 6.9032 < 8.9742] w=0.1533 to align # Constraint # added constraint: constraint((T0372)Y64.CB, (T0372)L94.CB) [> 3.0587 = 5.0979 < 6.6273] w=0.1533 to align # Constraint # added constraint: constraint((T0372)E172.CB, (T0372)E190.CB) [> 3.5024 = 5.8374 < 7.5886] w=0.1532 to align # Constraint # added constraint: constraint((T0372)V53.CB, (T0372)M66.CB) [> 3.8861 = 6.4769 < 8.4199] w=0.1532 to align # Constraint # added constraint: constraint((T0372)V53.CB, (T0372)P67.CB) [> 3.6706 = 6.1176 < 7.9529] w=0.1532 to align # Constraint # added constraint: constraint((T0372)V53.CB, (T0372)V76.CB) [> 4.0919 = 6.8199 < 8.8659] w=0.1531 to align # Constraint # added constraint: constraint((T0372)F54.CB, (T0372)Y64.CB) [> 3.6851 = 6.1419 < 7.9845] w=0.1531 to align # Constraint # added constraint: constraint((T0372)Q44.CB, (T0372)D83.CB) [> 4.3413 = 7.2355 < 9.4061] w=0.1530 to align # Constraint # added constraint: constraint((T0372)I210.CB, (T0372)T221.CB) [> 4.6774 = 7.7956 < 10.1343] w=0.1421 to align # Constraint # added constraint: constraint((T0372)K216.CB, (T0372)D239.CB) [> 4.6880 = 7.8133 < 10.1573] w=0.1408 to align # Constraint # added constraint: constraint((T0372)Q44.CB, (T0372)K55.CB) [> 3.6353 = 6.0588 < 7.8764] w=0.1372 to align # Constraint # added constraint: constraint((T0372)L52.CB, (T0372)M66.CB) [> 3.9613 = 6.6021 < 8.5828] w=0.1372 to align # Constraint # added constraint: constraint((T0372)Y155.CB, (T0372)I210.CB) [> 3.2480 = 5.4134 < 7.0374] w=0.1371 to align # Constraint # added constraint: constraint((T0372)A278.CB, (T0372)Y291.CB) [> 3.8488 = 6.4146 < 8.3390] w=0.1371 to align # Constraint # added constraint: constraint((T0372)A46.CB, (T0372)K79.CB) [> 3.7057 = 6.1761 < 8.0290] w=0.1371 to align # Constraint # added constraint: constraint((T0372)F18.CB, (T0372)M66.CB) [> 4.0579 = 6.7631 < 8.7920] w=0.1370 to align # Constraint # added constraint: constraint((T0372)C181.CB, (T0372)E236.CB) [> 4.0738 = 6.7896 < 8.8265] w=0.1366 to align # Constraint # added constraint: constraint((T0372)L52.CB, (T0372)V68.CB) [> 3.4759 = 5.7931 < 7.5310] w=0.1366 to align # Constraint # added constraint: constraint((T0372)I195.CB, (T0372)L206.CB) [> 3.9296 = 6.5493 < 8.5141] w=0.1366 to align # Constraint # added constraint: constraint((T0372)G232.CA, (T0372)Y261.CB) [> 3.6711 = 6.1185 < 7.9541] w=0.1366 to align # Constraint # added constraint: constraint((T0372)V53.CB, (T0372)M65.CB) [> 3.6032 = 6.0053 < 7.8069] w=0.1365 to align # Constraint # added constraint: constraint((T0372)F51.CB, (T0372)V68.CB) [> 3.6867 = 6.1445 < 7.9879] w=0.1365 to align # Constraint # added constraint: constraint((T0372)I210.CB, (T0372)M248.CB) [> 4.2293 = 7.0489 < 9.1635] w=0.1361 to align # Constraint # added constraint: constraint((T0372)A63.CB, (T0372)L94.CB) [> 3.9932 = 6.6554 < 8.6520] w=0.1361 to align # Constraint # added constraint: constraint((T0372)Y64.CB, (T0372)M93.CB) [> 4.4103 = 7.3505 < 9.5556] w=0.1361 to align # Constraint # added constraint: constraint((T0372)K55.CB, (T0372)Y64.CB) [> 3.6296 = 6.0494 < 7.8642] w=0.1360 to align # Constraint # added constraint: constraint((T0372)Y155.CB, (T0372)D243.CB) [> 4.1910 = 6.9851 < 9.0806] w=0.1356 to align # Constraint # added constraint: constraint((T0372)L169.CB, (T0372)A197.CB) [> 3.6226 = 6.0377 < 7.8490] w=0.1356 to align # Constraint # added constraint: constraint((T0372)V233.CB, (T0372)L270.CB) [> 2.4911 = 4.1519 < 5.3975] w=0.1350 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)V235.CB) [> 4.4473 = 7.4122 < 9.6359] w=0.1233 to align # Constraint # added constraint: constraint((T0372)I217.CB, (T0372)A238.CB) [> 4.1526 = 6.9209 < 8.9972] w=0.1232 to align # Constraint # added constraint: constraint((T0372)P225.CB, (T0372)H234.CB) [> 4.3274 = 7.2124 < 9.3761] w=0.1215 to align # Constraint # added constraint: constraint((T0372)G223.CA, (T0372)E236.CB) [> 2.9999 = 4.9998 < 6.4998] w=0.1213 to align # Constraint # added constraint: constraint((T0372)F222.CB, (T0372)K237.CB) [> 2.7315 = 4.5526 < 5.9183] w=0.1213 to align # Constraint # added constraint: constraint((T0372)F51.CB, (T0372)P67.CB) [> 3.2084 = 5.3474 < 6.9516] w=0.1202 to align # Constraint # added constraint: constraint((T0372)I7.CB, (T0372)V47.CB) [> 4.1243 = 6.8738 < 8.9360] w=0.1201 to align # Constraint # added constraint: constraint((T0372)L130.CB, (T0372)A254.CB) [> 3.3385 = 5.5641 < 7.2333] w=0.1201 to align # Constraint # added constraint: constraint((T0372)I160.CB, (T0372)A203.CB) [> 2.7940 = 4.6567 < 6.0536] w=0.1201 to align # Constraint # added constraint: constraint((T0372)T43.CB, (T0372)W57.CB) [> 3.7699 = 6.2832 < 8.1681] w=0.1201 to align # Constraint # added constraint: constraint((T0372)D6.CB, (T0372)F45.CB) [> 4.2784 = 7.1307 < 9.2699] w=0.1201 to align # Constraint # added constraint: constraint((T0372)L62.CB, (T0372)L94.CB) [> 3.3285 = 5.5475 < 7.2117] w=0.1200 to align # Constraint # added constraint: constraint((T0372)F54.CB, (T0372)A63.CB) [> 3.4362 = 5.7269 < 7.4450] w=0.1200 to align # Constraint # added constraint: constraint((T0372)L52.CB, (T0372)M65.CB) [> 3.7796 = 6.2993 < 8.1890] w=0.1200 to align # Constraint # added constraint: constraint((T0372)K74.CB, (T0372)I107.CB) [> 3.9133 = 6.5222 < 8.4789] w=0.1200 to align # Constraint # added constraint: constraint((T0372)L34.CB, (T0372)T43.CB) [> 3.3599 = 5.5999 < 7.2799] w=0.1200 to align # Constraint # added constraint: constraint((T0372)L77.CB, (T0372)I107.CB) [> 4.0855 = 6.8091 < 8.8519] w=0.1199 to align # Constraint # added constraint: constraint((T0372)F231.CB, (T0372)Q260.CB) [> 4.2250 = 7.0416 < 9.1541] w=0.1198 to align # Constraint # added constraint: constraint((T0372)N265.CB, (T0372)K279.CB) [> 4.4278 = 7.3797 < 9.5936] w=0.1198 to align # Constraint # added constraint: constraint((T0372)N265.CB, (T0372)A278.CB) [> 3.2947 = 5.4911 < 7.1385] w=0.1198 to align # Constraint # added constraint: constraint((T0372)I264.CB, (T0372)A278.CB) [> 4.3030 = 7.1717 < 9.3232] w=0.1198 to align # Constraint # added constraint: constraint((T0372)C181.CB, (T0372)P284.CB) [> 3.7736 = 6.2892 < 8.1760] w=0.1195 to align # Constraint # added constraint: constraint((T0372)L52.CB, (T0372)V76.CB) [> 3.6879 = 6.1465 < 7.9904] w=0.1194 to align # Constraint # added constraint: constraint((T0372)F54.CB, (T0372)M66.CB) [> 3.6257 = 6.0428 < 7.8556] w=0.1189 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)F201.CB) [> 4.0851 = 6.8086 < 8.8512] w=0.1188 to align # Constraint # added constraint: constraint((T0372)F54.CB, (T0372)L80.CB) [> 3.5656 = 5.9426 < 7.7254] w=0.1188 to align # Constraint # added constraint: constraint((T0372)A197.CB, (T0372)H234.CB) [> 3.4819 = 5.8031 < 7.5441] w=0.1079 to align # Constraint # added constraint: constraint((T0372)P153.CB, (T0372)N214.CB) [> 4.2568 = 7.0947 < 9.2232] w=0.1079 to align # Constraint # added constraint: constraint((T0372)V218.CB, (T0372)T240.CB) [> 4.1087 = 6.8479 < 8.9023] w=0.1063 to align # Constraint # added constraint: constraint((T0372)C176.CB, (T0372)E236.CB) [> 4.6179 = 7.6965 < 10.0055] w=0.1044 to align # Constraint # added constraint: constraint((T0372)G223.CA, (T0372)K237.CB) [> 4.6282 = 7.7137 < 10.0278] w=0.1043 to align # Constraint # added constraint: constraint((T0372)G223.CA, (T0372)I264.CB) [> 4.4995 = 7.4992 < 9.7490] w=0.1038 to align # Constraint # added constraint: constraint((T0372)C176.CB, (T0372)G186.CA) [> 3.9166 = 6.5276 < 8.4859] w=0.1036 to align # Constraint # added constraint: constraint((T0372)L169.CB, (T0372)N189.CB) [> 3.0830 = 5.1383 < 6.6798] w=0.1035 to align # Constraint # added constraint: constraint((T0372)L270.CB, (T0372)Y291.CB) [> 4.2081 = 7.0135 < 9.1176] w=0.1034 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)E236.CB) [> 4.0760 = 6.7934 < 8.8314] w=0.1031 to align # Constraint # added constraint: constraint((T0372)R127.CB, (T0372)P258.CB) [> 3.3438 = 5.5730 < 7.2449] w=0.1030 to align # Constraint # added constraint: constraint((T0372)Y155.CB, (T0372)A219.CB) [> 4.2850 = 7.1417 < 9.2843] w=0.1029 to align # Constraint # added constraint: constraint((T0372)M93.CB, (T0372)L104.CB) [> 4.0764 = 6.7941 < 8.8323] w=0.1029 to align # Constraint # added constraint: constraint((T0372)L133.CB, (T0372)N255.CB) [> 3.3803 = 5.6339 < 7.3240] w=0.1029 to align # Constraint # added constraint: constraint((T0372)M65.CB, (T0372)L77.CB) [> 3.9699 = 6.6165 < 8.6015] w=0.1028 to align # Constraint # added constraint: constraint((T0372)C27.CB, (T0372)Y64.CB) [> 3.2501 = 5.4168 < 7.0419] w=0.1027 to align # Constraint # added constraint: constraint((T0372)F4.CB, (T0372)A46.CB) [> 3.8223 = 6.3706 < 8.2817] w=0.1027 to align # Constraint # added constraint: constraint((T0372)G232.CA, (T0372)I262.CB) [> 3.8415 = 6.4025 < 8.3233] w=0.1027 to align # Constraint # added constraint: constraint((T0372)N26.CB, (T0372)Y64.CB) [> 3.7306 = 6.2176 < 8.0829] w=0.1027 to align # Constraint # added constraint: constraint((T0372)A63.CB, (T0372)L77.CB) [> 4.2446 = 7.0744 < 9.1967] w=0.1027 to align # Constraint # added constraint: constraint((T0372)A63.CB, (T0372)L80.CB) [> 3.3806 = 5.6343 < 7.3246] w=0.1027 to align # Constraint # added constraint: constraint((T0372)L211.CB, (T0372)I242.CB) [> 4.6489 = 7.7482 < 10.0726] w=0.1024 to align # Constraint # added constraint: constraint((T0372)K21.CB, (T0372)V68.CB) [> 4.2538 = 7.0897 < 9.2166] w=0.1023 to align # Constraint # added constraint: constraint((T0372)F18.CB, (T0372)L52.CB) [> 4.0003 = 6.6672 < 8.6674] w=0.1023 to align # Constraint # added constraint: constraint((T0372)N26.CB, (T0372)M66.CB) [> 2.7917 = 4.6529 < 6.0488] w=0.1022 to align # Constraint # added constraint: constraint((T0372)T43.CB, (T0372)F54.CB) [> 3.9098 = 6.5164 < 8.4713] w=0.1019 to align # Constraint # added constraint: constraint((T0372)D42.CB, (T0372)W57.CB) [> 3.9245 = 6.5408 < 8.5030] w=0.1018 to align # Constraint # added constraint: constraint((T0372)F56.CB, (T0372)L80.CB) [> 3.6890 = 6.1484 < 7.9929] w=0.1016 to align # Constraint # added constraint: constraint((T0372)F54.CB, (T0372)L77.CB) [> 4.4777 = 7.4628 < 9.7017] w=0.1016 to align # Constraint # added constraint: constraint((T0372)L194.CB, (T0372)V235.CB) [> 4.5197 = 7.5328 < 9.7926] w=0.0889 to align # Constraint # added constraint: constraint((T0372)L169.CB, (T0372)L198.CB) [> 3.6987 = 6.1645 < 8.0139] w=0.0882 to align # Constraint # added constraint: constraint((T0372)V53.CB, (T0372)L80.CB) [> 3.8243 = 6.3739 < 8.2860] w=0.0860 to align # Constraint # added constraint: constraint((T0372)S30.CB, (T0372)I226.CB) [> 3.1661 = 5.2768 < 6.8598] w=0.0859 to align # Constraint # added constraint: constraint((T0372)I7.CB, (T0372)A46.CB) [> 3.8846 = 6.4743 < 8.4167] w=0.0859 to align # Constraint # added constraint: constraint((T0372)H228.CB, (T0372)Y263.CB) [> 3.6916 = 6.1526 < 7.9984] w=0.0859 to align # Constraint # added constraint: constraint((T0372)G232.CA, (T0372)Y263.CB) [> 3.8061 = 6.3434 < 8.2464] w=0.0859 to align # Constraint # added constraint: constraint((T0372)Y125.CB, (T0372)A254.CB) [> 3.9695 = 6.6158 < 8.6006] w=0.0859 to align # Constraint # added constraint: constraint((T0372)L130.CB, (T0372)I257.CB) [> 3.9477 = 6.5794 < 8.5533] w=0.0858 to align # Constraint # added constraint: constraint((T0372)Q44.CB, (T0372)W57.CB) [> 3.4824 = 5.8039 < 7.5451] w=0.0858 to align # Constraint # added constraint: constraint((T0372)L133.CB, (T0372)P258.CB) [> 3.6536 = 6.0894 < 7.9162] w=0.0858 to align # Constraint # added constraint: constraint((T0372)L133.CB, (T0372)Y251.CB) [> 3.0424 = 5.0707 < 6.5920] w=0.0858 to align # Constraint # added constraint: constraint((T0372)K134.CB, (T0372)Y251.CB) [> 4.3340 = 7.2234 < 9.3904] w=0.0858 to align # Constraint # added constraint: constraint((T0372)R12.CB, (T0372)C35.CB) [> 4.0709 = 6.7848 < 8.8203] w=0.0858 to align # Constraint # added constraint: constraint((T0372)V53.CB, (T0372)A63.CB) [> 3.9325 = 6.5542 < 8.5204] w=0.0858 to align # Constraint # added constraint: constraint((T0372)V53.CB, (T0372)Y64.CB) [> 3.8726 = 6.4543 < 8.3905] w=0.0858 to align # Constraint # added constraint: constraint((T0372)E60.CB, (T0372)N90.CB) [> 3.1577 = 5.2628 < 6.8417] w=0.0858 to align # Constraint # added constraint: constraint((T0372)C27.CB, (T0372)M66.CB) [> 3.3540 = 5.5901 < 7.2671] w=0.0857 to align # Constraint # added constraint: constraint((T0372)I15.CB, (T0372)F45.CB) [> 4.4610 = 7.4349 < 9.6654] w=0.0857 to align # Constraint # added constraint: constraint((T0372)E172.CB, (T0372)D182.CB) [> 4.3473 = 7.2455 < 9.4192] w=0.0857 to align # Constraint # added constraint: constraint((T0372)F31.CB, (T0372)Y64.CB) [> 3.5133 = 5.8555 < 7.6122] w=0.0857 to align # Constraint # added constraint: constraint((T0372)I15.CB, (T0372)S32.CB) [> 4.0564 = 6.7607 < 8.7888] w=0.0857 to align # Constraint # added constraint: constraint((T0372)S22.CB, (T0372)G69.CA) [> 4.2138 = 7.0230 < 9.1299] w=0.0857 to align # Constraint # added constraint: constraint((T0372)C27.CB, (T0372)V53.CB) [> 4.5090 = 7.5151 < 9.7696] w=0.0857 to align # Constraint # added constraint: constraint((T0372)C27.CB, (T0372)K55.CB) [> 3.6399 = 6.0665 < 7.8865] w=0.0857 to align # Constraint # added constraint: constraint((T0372)F31.CB, (T0372)K55.CB) [> 3.0266 = 5.0443 < 6.5575] w=0.0857 to align # Constraint # added constraint: constraint((T0372)F56.CB, (T0372)E87.CB) [> 4.5263 = 7.5438 < 9.8070] w=0.0857 to align # Constraint # added constraint: constraint((T0372)P67.CB, (T0372)V76.CB) [> 4.0911 = 6.8185 < 8.8641] w=0.0856 to align # Constraint # added constraint: constraint((T0372)N26.CB, (T0372)G95.CA) [> 4.6845 = 7.8075 < 10.1497] w=0.0856 to align # Constraint # added constraint: constraint((T0372)D28.CB, (T0372)L94.CB) [> 4.2010 = 7.0016 < 9.1021] w=0.0856 to align # Constraint # added constraint: constraint((T0372)F4.CB, (T0372)F45.CB) [> 3.6110 = 6.0183 < 7.8238] w=0.0856 to align # Constraint # added constraint: constraint((T0372)F4.CB, (T0372)Q44.CB) [> 3.5281 = 5.8802 < 7.6443] w=0.0856 to align # Constraint # added constraint: constraint((T0372)T14.CB, (T0372)F51.CB) [> 3.7329 = 6.2216 < 8.0880] w=0.0856 to align # Constraint # added constraint: constraint((T0372)G232.CA, (T0372)A278.CB) [> 3.8277 = 6.3795 < 8.2934] w=0.0855 to align # Constraint # added constraint: constraint((T0372)G209.CA, (T0372)V218.CB) [> 4.3886 = 7.3143 < 9.5086] w=0.0850 to align # Constraint # added constraint: constraint((T0372)L52.CB, (T0372)L73.CB) [> 4.3658 = 7.2764 < 9.4593] w=0.0850 to align # Constraint # added constraint: constraint((T0372)E60.CB, (T0372)H89.CB) [> 4.3433 = 7.2388 < 9.4104] w=0.0847 to align # Constraint # added constraint: constraint((T0372)Q61.CB, (T0372)H89.CB) [> 4.0306 = 6.7177 < 8.7330] w=0.0847 to align # Constraint # added constraint: constraint((T0372)K55.CB, (T0372)M66.CB) [> 3.7064 = 6.1774 < 8.0306] w=0.0846 to align # Constraint # added constraint: constraint((T0372)L206.CB, (T0372)H234.CB) [> 4.3857 = 7.3095 < 9.5024] w=0.0844 to align # Constraint # added constraint: constraint((T0372)P153.CB, (T0372)H212.CB) [> 4.0069 = 6.6782 < 8.6817] w=0.0739 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)H234.CB) [> 4.3049 = 7.1748 < 9.3272] w=0.0705 to align # Constraint # added constraint: constraint((T0372)K216.CB, (T0372)A238.CB) [> 4.7370 = 7.8950 < 10.2635] w=0.0688 to align # Constraint # added constraint: constraint((T0372)T19.CB, (T0372)L29.CB) [> 3.3927 = 5.6546 < 7.3509] w=0.0688 to align # Constraint # added constraint: constraint((T0372)F31.CB, (T0372)F54.CB) [> 4.4531 = 7.4218 < 9.6484] w=0.0688 to align # Constraint # added constraint: constraint((T0372)E105.CB, (T0372)T115.CB) [> 3.6166 = 6.0276 < 7.8359] w=0.0687 to align # Constraint # added constraint: constraint((T0372)R101.CB, (T0372)D117.CB) [> 4.1173 = 6.8622 < 8.9209] w=0.0687 to align # Constraint # added constraint: constraint((T0372)M66.CB, (T0372)C97.CB) [> 4.4955 = 7.4925 < 9.7402] w=0.0687 to align # Constraint # added constraint: constraint((T0372)F56.CB, (T0372)L94.CB) [> 4.4566 = 7.4278 < 9.6561] w=0.0687 to align # Constraint # added constraint: constraint((T0372)W37.CB, (T0372)A197.CB) [> 3.5775 = 5.9624 < 7.7512] w=0.0687 to align # Constraint # added constraint: constraint((T0372)L34.CB, (T0372)F54.CB) [> 4.5342 = 7.5570 < 9.8240] w=0.0687 to align # Constraint # added constraint: constraint((T0372)N33.CB, (T0372)I226.CB) [> 3.5889 = 5.9815 < 7.7759] w=0.0687 to align # Constraint # added constraint: constraint((T0372)I7.CB, (T0372)L52.CB) [> 4.5311 = 7.5518 < 9.8174] w=0.0687 to align # Constraint # added constraint: constraint((T0372)D6.CB, (T0372)Q44.CB) [> 3.8330 = 6.3884 < 8.3049] w=0.0687 to align # Constraint # added constraint: constraint((T0372)V53.CB, (T0372)V68.CB) [> 3.8866 = 6.4776 < 8.4209] w=0.0686 to align # Constraint # added constraint: constraint((T0372)F54.CB, (T0372)P67.CB) [> 4.0554 = 6.7590 < 8.7867] w=0.0686 to align # Constraint # added constraint: constraint((T0372)Q61.CB, (T0372)N90.CB) [> 3.7839 = 6.3066 < 8.1985] w=0.0686 to align # Constraint # added constraint: constraint((T0372)L62.CB, (T0372)N90.CB) [> 3.0191 = 5.0318 < 6.5413] w=0.0686 to align # Constraint # added constraint: constraint((T0372)R78.CB, (T0372)I107.CB) [> 4.1266 = 6.8777 < 8.9410] w=0.0686 to align # Constraint # added constraint: constraint((T0372)G271.CA, (T0372)L280.CB) [> 3.2709 = 5.4514 < 7.0869] w=0.0686 to align # Constraint # added constraint: constraint((T0372)I15.CB, (T0372)V47.CB) [> 4.1278 = 6.8797 < 8.9436] w=0.0685 to align # Constraint # added constraint: constraint((T0372)L73.CB, (T0372)I107.CB) [> 3.6084 = 6.0140 < 7.8182] w=0.0685 to align # Constraint # added constraint: constraint((T0372)A46.CB, (T0372)F56.CB) [> 4.5624 = 7.6040 < 9.8852] w=0.0685 to align # Constraint # added constraint: constraint((T0372)L77.CB, (T0372)D103.CB) [> 4.2928 = 7.1547 < 9.3010] w=0.0685 to align # Constraint # added constraint: constraint((T0372)T19.CB, (T0372)M66.CB) [> 4.0428 = 6.7380 < 8.7594] w=0.0685 to align # Constraint # added constraint: constraint((T0372)I7.CB, (T0372)R38.CB) [> 3.4131 = 5.6885 < 7.3951] w=0.0684 to align # Constraint # added constraint: constraint((T0372)R12.CB, (T0372)R38.CB) [> 3.0757 = 5.1262 < 6.6641] w=0.0684 to align # Constraint # added constraint: constraint((T0372)I15.CB, (T0372)V53.CB) [> 4.0869 = 6.8114 < 8.8549] w=0.0684 to align # Constraint # added constraint: constraint((T0372)F18.CB, (T0372)V68.CB) [> 3.7561 = 6.2602 < 8.1383] w=0.0684 to align # Constraint # added constraint: constraint((T0372)L34.CB, (T0372)K55.CB) [> 3.6840 = 6.1400 < 7.9820] w=0.0684 to align # Constraint # added constraint: constraint((T0372)I48.CB, (T0372)P67.CB) [> 4.6646 = 7.7743 < 10.1065] w=0.0684 to align # Constraint # added constraint: constraint((T0372)F56.CB, (T0372)D83.CB) [> 4.1790 = 6.9651 < 9.0546] w=0.0684 to align # Constraint # added constraint: constraint((T0372)F56.CB, (T0372)F91.CB) [> 4.0532 = 6.7554 < 8.7820] w=0.0684 to align # Constraint # added constraint: constraint((T0372)Q61.CB, (T0372)L80.CB) [> 3.7383 = 6.2305 < 8.0997] w=0.0684 to align # Constraint # added constraint: constraint((T0372)L77.CB, (T0372)M93.CB) [> 3.9748 = 6.6247 < 8.6121] w=0.0684 to align # Constraint # added constraint: constraint((T0372)L80.CB, (T0372)M93.CB) [> 4.5051 = 7.5085 < 9.7611] w=0.0684 to align # Constraint # added constraint: constraint((T0372)I81.CB, (T0372)F91.CB) [> 4.0504 = 6.7507 < 8.7760] w=0.0684 to align # Constraint # added constraint: constraint((T0372)V233.CB, (T0372)I262.CB) [> 3.3449 = 5.5749 < 7.2474] w=0.0684 to align # Constraint # added constraint: constraint((T0372)F222.CB, (T0372)G232.CA) [> 4.0916 = 6.8194 < 8.8652] w=0.0684 to align # Constraint # added constraint: constraint((T0372)T221.CB, (T0372)G232.CA) [> 3.8920 = 6.4867 < 8.4327] w=0.0684 to align # Constraint # added constraint: constraint((T0372)L270.CB, (T0372)L280.CB) [> 3.7128 = 6.1879 < 8.0443] w=0.0684 to align # Constraint # added constraint: constraint((T0372)A193.CB, (T0372)L204.CB) [> 4.3955 = 7.3258 < 9.5235] w=0.0681 to align # Constraint # added constraint: constraint((T0372)T14.CB, (T0372)L52.CB) [> 3.7695 = 6.2825 < 8.1672] w=0.0680 to align # Constraint # added constraint: constraint((T0372)F18.CB, (T0372)V53.CB) [> 3.6985 = 6.1642 < 8.0134] w=0.0680 to align # Constraint # added constraint: constraint((T0372)E172.CB, (T0372)F222.CB) [> 4.5431 = 7.5719 < 9.8435] w=0.0680 to align # Constraint # added constraint: constraint((T0372)E172.CB, (T0372)R191.CB) [> 4.1864 = 6.9774 < 9.0706] w=0.0679 to align # Constraint # added constraint: constraint((T0372)E172.CB, (T0372)A193.CB) [> 3.5547 = 5.9245 < 7.7019] w=0.0675 to align # Constraint # added constraint: constraint((T0372)L169.CB, (T0372)A193.CB) [> 2.6611 = 4.4351 < 5.7656] w=0.0675 to align # Constraint # added constraint: constraint((T0372)K74.CB, (T0372)L108.CB) [> 3.7800 = 6.2999 < 8.1899] w=0.0674 to align # Constraint # added constraint: constraint((T0372)L62.CB, (T0372)H89.CB) [> 3.5168 = 5.8614 < 7.6198] w=0.0673 to align # Constraint # added constraint: constraint((T0372)Q61.CB, (T0372)M93.CB) [> 3.0654 = 5.1091 < 6.6418] w=0.0673 to align # Constraint # added constraint: constraint((T0372)P153.CB, (T0372)G215.CA) [> 4.0415 = 6.7358 < 8.7565] w=0.0567 to align # Constraint # added constraint: constraint((T0372)A203.CB, (T0372)M224.CB) [> 4.2088 = 7.0146 < 9.1190] w=0.0547 to align # Constraint # added constraint: constraint((T0372)N227.CB, (T0372)Y263.CB) [> 3.9844 = 6.6407 < 8.6330] w=0.0529 to align # Constraint # added constraint: constraint((T0372)I145.CB, (T0372)N250.CB) [> 4.6706 = 7.7843 < 10.1196] w=0.0516 to align # Constraint # added constraint: constraint((T0372)I145.CB, (T0372)Y251.CB) [> 3.0215 = 5.0359 < 6.5466] w=0.0516 to align # Constraint # added constraint: constraint((T0372)R147.CB, (T0372)G244.CA) [> 3.9840 = 6.6400 < 8.6320] w=0.0516 to align # Constraint # added constraint: constraint((T0372)R147.CB, (T0372)A247.CB) [> 4.1122 = 6.8536 < 8.9097] w=0.0516 to align # Constraint # added constraint: constraint((T0372)F148.CB, (T0372)L211.CB) [> 4.3142 = 7.1903 < 9.3474] w=0.0516 to align # Constraint # added constraint: constraint((T0372)F148.CB, (T0372)V213.CB) [> 4.7754 = 7.9589 < 10.3466] w=0.0516 to align # Constraint # added constraint: constraint((T0372)F148.CB, (T0372)G244.CA) [> 2.5850 = 4.3084 < 5.6009] w=0.0516 to align # Constraint # added constraint: constraint((T0372)F148.CB, (T0372)A245.CB) [> 3.2505 = 5.4174 < 7.0427] w=0.0516 to align # Constraint # added constraint: constraint((T0372)F148.CB, (T0372)M248.CB) [> 2.5443 = 4.2405 < 5.5126] w=0.0516 to align # Constraint # added constraint: constraint((T0372)I145.CB, (T0372)M248.CB) [> 4.6474 = 7.7457 < 10.0695] w=0.0516 to align # Constraint # added constraint: constraint((T0372)H144.CB, (T0372)A247.CB) [> 3.6459 = 6.0766 < 7.8995] w=0.0516 to align # Constraint # added constraint: constraint((T0372)A46.CB, (T0372)D83.CB) [> 2.7088 = 4.5146 < 5.8690] w=0.0516 to align # Constraint # added constraint: constraint((T0372)Q44.CB, (T0372)A84.CB) [> 4.4303 = 7.3839 < 9.5991] w=0.0516 to align # Constraint # added constraint: constraint((T0372)F39.CB, (T0372)Y196.CB) [> 3.3731 = 5.6218 < 7.3083] w=0.0516 to align # Constraint # added constraint: constraint((T0372)N33.CB, (T0372)N200.CB) [> 3.9177 = 6.5294 < 8.4883] w=0.0516 to align # Constraint # added constraint: constraint((T0372)S30.CB, (T0372)F201.CB) [> 4.1871 = 6.9786 < 9.0721] w=0.0516 to align # Constraint # added constraint: constraint((T0372)F18.CB, (T0372)V47.CB) [> 4.0024 = 6.6707 < 8.6719] w=0.0516 to align # Constraint # added constraint: constraint((T0372)V218.CB, (T0372)G244.CA) [> 4.5207 = 7.5345 < 9.7948] w=0.0516 to align # Constraint # added constraint: constraint((T0372)G205.CA, (T0372)I226.CB) [> 4.0362 = 6.7270 < 8.7452] w=0.0516 to align # Constraint # added constraint: constraint((T0372)R149.CB, (T0372)Y251.CB) [> 4.5422 = 7.5703 < 9.8414] w=0.0516 to align # Constraint # added constraint: constraint((T0372)T151.CB, (T0372)G244.CA) [> 4.6090 = 7.6816 < 9.9861] w=0.0516 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)T221.CB) [> 4.6710 = 7.7850 < 10.1205] w=0.0516 to align # Constraint # added constraint: constraint((T0372)L169.CB, (T0372)E236.CB) [> 4.5327 = 7.5545 < 9.8209] w=0.0516 to align # Constraint # added constraint: constraint((T0372)A203.CB, (T0372)R256.CB) [> 4.1747 = 6.9579 < 9.0452] w=0.0516 to align # Constraint # added constraint: constraint((T0372)V47.CB, (T0372)L80.CB) [> 4.0279 = 6.7131 < 8.7271] w=0.0516 to align # Constraint # added constraint: constraint((T0372)I15.CB, (T0372)L29.CB) [> 4.0421 = 6.7368 < 8.7579] w=0.0516 to align # Constraint # added constraint: constraint((T0372)L34.CB, (T0372)F45.CB) [> 4.5552 = 7.5920 < 9.8695] w=0.0516 to align # Constraint # added constraint: constraint((T0372)F39.CB, (T0372)A193.CB) [> 3.4443 = 5.7405 < 7.4627] w=0.0516 to align # Constraint # added constraint: constraint((T0372)F51.CB, (T0372)L73.CB) [> 4.0690 = 6.7817 < 8.8163] w=0.0516 to align # Constraint # added constraint: constraint((T0372)L171.CB, (T0372)K216.CB) [> 4.6551 = 7.7585 < 10.0860] w=0.0515 to align # Constraint # added constraint: constraint((T0372)A58.CB, (T0372)E190.CB) [> 3.0771 = 5.1286 < 6.6671] w=0.0515 to align # Constraint # added constraint: constraint((T0372)A58.CB, (T0372)N189.CB) [> 4.7911 = 7.9852 < 10.3808] w=0.0515 to align # Constraint # added constraint: constraint((T0372)A58.CB, (T0372)T187.CB) [> 3.1215 = 5.2025 < 6.7632] w=0.0515 to align # Constraint # added constraint: constraint((T0372)L40.CB, (T0372)A193.CB) [> 3.1423 = 5.2372 < 6.8084] w=0.0515 to align # Constraint # added constraint: constraint((T0372)L40.CB, (T0372)E190.CB) [> 3.8858 = 6.4763 < 8.4192] w=0.0515 to align # Constraint # added constraint: constraint((T0372)F39.CB, (T0372)W57.CB) [> 3.9832 = 6.6387 < 8.6303] w=0.0515 to align # Constraint # added constraint: constraint((T0372)S36.CB, (T0372)N227.CB) [> 3.9879 = 6.6465 < 8.6404] w=0.0515 to align # Constraint # added constraint: constraint((T0372)L9.CB, (T0372)R38.CB) [> 4.2039 = 7.0064 < 9.1083] w=0.0515 to align # Constraint # added constraint: constraint((T0372)I195.CB, (T0372)F222.CB) [> 4.7806 = 7.9677 < 10.3580] w=0.0515 to align # Constraint # added constraint: constraint((T0372)R191.CB, (T0372)F222.CB) [> 4.7828 = 7.9713 < 10.3627] w=0.0515 to align # Constraint # added constraint: constraint((T0372)Y123.CB, (T0372)V233.CB) [> 4.6995 = 7.8325 < 10.1822] w=0.0515 to align # Constraint # added constraint: constraint((T0372)G95.CA, (T0372)Y120.CB) [> 4.1448 = 6.9080 < 8.9804] w=0.0515 to align # Constraint # added constraint: constraint((T0372)K88.CB, (T0372)F112.CB) [> 4.1418 = 6.9031 < 8.9740] w=0.0515 to align # Constraint # added constraint: constraint((T0372)M65.CB, (T0372)M100.CB) [> 4.5384 = 7.5640 < 9.8331] w=0.0515 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)V178.CB) [> 3.9040 = 6.5066 < 8.4586] w=0.0515 to align # Constraint # added constraint: constraint((T0372)S30.CB, (T0372)F54.CB) [> 4.4751 = 7.4586 < 9.6961] w=0.0515 to align # Constraint # added constraint: constraint((T0372)H234.CB, (T0372)I264.CB) [> 4.4732 = 7.4553 < 9.6919] w=0.0515 to align # Constraint # added constraint: constraint((T0372)V233.CB, (T0372)Y263.CB) [> 4.4608 = 7.4346 < 9.6650] w=0.0515 to align # Constraint # added constraint: constraint((T0372)D154.CB, (T0372)H212.CB) [> 3.7485 = 6.2474 < 8.1217] w=0.0515 to align # Constraint # added constraint: constraint((T0372)R191.CB, (T0372)N200.CB) [> 3.9787 = 6.6312 < 8.6206] w=0.0515 to align # Constraint # added constraint: constraint((T0372)F31.CB, (T0372)T43.CB) [> 4.6947 = 7.8245 < 10.1718] w=0.0514 to align # Constraint # added constraint: constraint((T0372)W37.CB, (T0372)F56.CB) [> 3.6843 = 6.1404 < 7.9826] w=0.0514 to align # Constraint # added constraint: constraint((T0372)T43.CB, (T0372)A58.CB) [> 3.5344 = 5.8907 < 7.6579] w=0.0514 to align # Constraint # added constraint: constraint((T0372)K55.CB, (T0372)L80.CB) [> 3.7414 = 6.2357 < 8.1064] w=0.0514 to align # Constraint # added constraint: constraint((T0372)A63.CB, (T0372)N90.CB) [> 4.2816 = 7.1361 < 9.2769] w=0.0514 to align # Constraint # added constraint: constraint((T0372)T16.CB, (T0372)C35.CB) [> 3.9762 = 6.6270 < 8.6151] w=0.0514 to align # Constraint # added constraint: constraint((T0372)F4.CB, (T0372)V47.CB) [> 4.0949 = 6.8249 < 8.8723] w=0.0514 to align # Constraint # added constraint: constraint((T0372)R24.CB, (T0372)C97.CB) [> 3.9395 = 6.5658 < 8.5355] w=0.0513 to align # Constraint # added constraint: constraint((T0372)R12.CB, (T0372)S32.CB) [> 4.2435 = 7.0725 < 9.1943] w=0.0513 to align # Constraint # added constraint: constraint((T0372)S22.CB, (T0372)R101.CB) [> 3.8156 = 6.3594 < 8.2673] w=0.0513 to align # Constraint # added constraint: constraint((T0372)G95.CA, (T0372)L104.CB) [> 2.8624 = 4.7707 < 6.2019] w=0.0513 to align # Constraint # added constraint: constraint((T0372)A278.CB, (T0372)I287.CB) [> 3.3881 = 5.6468 < 7.3408] w=0.0512 to align # Constraint # added constraint: constraint((T0372)I160.CB, (T0372)I217.CB) [> 4.7719 = 7.9533 < 10.3392] w=0.0510 to align # Constraint # added constraint: constraint((T0372)E156.CB, (T0372)V218.CB) [> 4.4715 = 7.4526 < 9.6883] w=0.0510 to align # Constraint # added constraint: constraint((T0372)L52.CB, (T0372)G69.CA) [> 3.6859 = 6.1432 < 7.9861] w=0.0510 to align # Constraint # added constraint: constraint((T0372)R24.CB, (T0372)G69.CA) [> 3.3859 = 5.6432 < 7.3361] w=0.0510 to align # Constraint # added constraint: constraint((T0372)L194.CB, (T0372)G208.CA) [> 4.2578 = 7.0964 < 9.2253] w=0.0509 to align # Constraint # added constraint: constraint((T0372)A193.CB, (T0372)L206.CB) [> 4.3764 = 7.2940 < 9.4822] w=0.0509 to align # Constraint # added constraint: constraint((T0372)A17.CB, (T0372)F51.CB) [> 4.5450 = 7.5750 < 9.8474] w=0.0508 to align # Constraint # added constraint: constraint((T0372)V235.CB, (T0372)L270.CB) [> 4.7002 = 7.8337 < 10.1838] w=0.0505 to align # Constraint # added constraint: constraint((T0372)Y64.CB, (T0372)L80.CB) [> 4.6638 = 7.7729 < 10.1048] w=0.0503 to align # Constraint # added constraint: constraint((T0372)L62.CB, (T0372)A84.CB) [> 3.9596 = 6.5994 < 8.5792] w=0.0503 to align # Constraint # added constraint: constraint((T0372)G59.CA, (T0372)H89.CB) [> 4.4875 = 7.4792 < 9.7229] w=0.0502 to align # Constraint # added constraint: constraint((T0372)L198.CB, (T0372)T207.CB) [> 4.1379 = 6.8965 < 8.9655] w=0.0500 to align # Constraint # added constraint: constraint((T0372)T221.CB, (T0372)A238.CB) [> 2.6999 = 4.4998 < 5.8498] w=0.0362 to align # Constraint # added constraint: constraint((T0372)Y152.CB, (T0372)N214.CB) [> 3.3745 = 5.6242 < 7.3114] w=0.0361 to align # Constraint # added constraint: constraint((T0372)A46.CB, (T0372)A84.CB) [> 2.8644 = 4.7741 < 6.2063] w=0.0344 to align # Constraint # added constraint: constraint((T0372)I48.CB, (T0372)L80.CB) [> 2.9705 = 4.9509 < 6.4361] w=0.0344 to align # Constraint # added constraint: constraint((T0372)L52.CB, (T0372)L80.CB) [> 3.7130 = 6.1884 < 8.0449] w=0.0344 to align # Constraint # added constraint: constraint((T0372)K55.CB, (T0372)A84.CB) [> 4.0972 = 6.8286 < 8.8772] w=0.0344 to align # Constraint # added constraint: constraint((T0372)W57.CB, (T0372)N90.CB) [> 4.1259 = 6.8764 < 8.9394] w=0.0344 to align # Constraint # added constraint: constraint((T0372)W57.CB, (T0372)F91.CB) [> 3.7425 = 6.2375 < 8.1088] w=0.0344 to align # Constraint # added constraint: constraint((T0372)Y64.CB, (T0372)A84.CB) [> 3.9404 = 6.5673 < 8.5375] w=0.0344 to align # Constraint # added constraint: constraint((T0372)Y64.CB, (T0372)N90.CB) [> 4.6579 = 7.7632 < 10.0922] w=0.0344 to align # Constraint # added constraint: constraint((T0372)M65.CB, (T0372)V96.CB) [> 4.6830 = 7.8050 < 10.1464] w=0.0344 to align # Constraint # added constraint: constraint((T0372)M66.CB, (T0372)V96.CB) [> 2.6349 = 4.3915 < 5.7089] w=0.0344 to align # Constraint # added constraint: constraint((T0372)P67.CB, (T0372)L80.CB) [> 3.4219 = 5.7031 < 7.4141] w=0.0344 to align # Constraint # added constraint: constraint((T0372)P67.CB, (T0372)I81.CB) [> 4.7176 = 7.8627 < 10.2216] w=0.0344 to align # Constraint # added constraint: constraint((T0372)S30.CB, (T0372)N200.CB) [> 3.4587 = 5.7644 < 7.4937] w=0.0344 to align # Constraint # added constraint: constraint((T0372)N33.CB, (T0372)F54.CB) [> 4.1265 = 6.8776 < 8.9408] w=0.0344 to align # Constraint # added constraint: constraint((T0372)H144.CB, (T0372)A293.CB) [> 3.6756 = 6.1260 < 7.9638] w=0.0344 to align # Constraint # added constraint: constraint((T0372)L275.CB, (T0372)Y291.CB) [> 2.6676 = 4.4459 < 5.7797] w=0.0344 to align # Constraint # added constraint: constraint((T0372)R276.CB, (T0372)I287.CB) [> 4.5942 = 7.6570 < 9.9541] w=0.0344 to align # Constraint # added constraint: constraint((T0372)K277.CB, (T0372)I287.CB) [> 4.1965 = 6.9941 < 9.0923] w=0.0344 to align # Constraint # added constraint: constraint((T0372)P67.CB, (T0372)V96.CB) [> 3.3846 = 5.6410 < 7.3334] w=0.0344 to align # Constraint # added constraint: constraint((T0372)D72.CB, (T0372)M100.CB) [> 3.4912 = 5.8186 < 7.5642] w=0.0344 to align # Constraint # added constraint: constraint((T0372)I81.CB, (T0372)L94.CB) [> 3.8964 = 6.4940 < 8.4422] w=0.0344 to align # Constraint # added constraint: constraint((T0372)A84.CB, (T0372)L94.CB) [> 3.3923 = 5.6539 < 7.3500] w=0.0344 to align # Constraint # added constraint: constraint((T0372)D85.CB, (T0372)L94.CB) [> 3.9761 = 6.6268 < 8.6149] w=0.0344 to align # Constraint # added constraint: constraint((T0372)I124.CB, (T0372)Y263.CB) [> 3.2108 = 5.3514 < 6.9568] w=0.0344 to align # Constraint # added constraint: constraint((T0372)I124.CB, (T0372)I264.CB) [> 4.2304 = 7.0507 < 9.1660] w=0.0344 to align # Constraint # added constraint: constraint((T0372)K141.CB, (T0372)A293.CB) [> 3.7095 = 6.1825 < 8.0372] w=0.0344 to align # Constraint # added constraint: constraint((T0372)S128.CB, (T0372)Y263.CB) [> 4.7021 = 7.8369 < 10.1880] w=0.0344 to align # Constraint # added constraint: constraint((T0372)R127.CB, (T0372)I264.CB) [> 3.6914 = 6.1524 < 7.9981] w=0.0344 to align # Constraint # added constraint: constraint((T0372)R127.CB, (T0372)Y263.CB) [> 3.9067 = 6.5112 < 8.4646] w=0.0344 to align # Constraint # added constraint: constraint((T0372)R127.CB, (T0372)I262.CB) [> 3.6727 = 6.1211 < 7.9574] w=0.0344 to align # Constraint # added constraint: constraint((T0372)I124.CB, (T0372)N265.CB) [> 2.9812 = 4.9687 < 6.4594] w=0.0344 to align # Constraint # added constraint: constraint((T0372)I15.CB, (T0372)L52.CB) [> 3.6415 = 6.0692 < 7.8900] w=0.0344 to align # Constraint # added constraint: constraint((T0372)I15.CB, (T0372)F31.CB) [> 3.8384 = 6.3973 < 8.3165] w=0.0344 to align # Constraint # added constraint: constraint((T0372)V53.CB, (T0372)I81.CB) [> 4.3940 = 7.3233 < 9.5203] w=0.0344 to align # Constraint # added constraint: constraint((T0372)A119.CB, (T0372)L288.CB) [> 4.5582 = 7.5970 < 9.8761] w=0.0344 to align # Constraint # added constraint: constraint((T0372)Y120.CB, (T0372)Y263.CB) [> 3.1780 = 5.2966 < 6.8856] w=0.0344 to align # Constraint # added constraint: constraint((T0372)Y120.CB, (T0372)I264.CB) [> 4.1441 = 6.9068 < 8.9788] w=0.0344 to align # Constraint # added constraint: constraint((T0372)Y120.CB, (T0372)N265.CB) [> 3.5426 = 5.9044 < 7.6757] w=0.0344 to align # Constraint # added constraint: constraint((T0372)A121.CB, (T0372)Y263.CB) [> 4.2666 = 7.1111 < 9.2444] w=0.0344 to align # Constraint # added constraint: constraint((T0372)A121.CB, (T0372)I264.CB) [> 2.9289 = 4.8815 < 6.3459] w=0.0344 to align # Constraint # added constraint: constraint((T0372)D122.CB, (T0372)I262.CB) [> 4.4969 = 7.4949 < 9.7433] w=0.0344 to align # Constraint # added constraint: constraint((T0372)D122.CB, (T0372)Y263.CB) [> 3.7397 = 6.2328 < 8.1026] w=0.0344 to align # Constraint # added constraint: constraint((T0372)Y123.CB, (T0372)L275.CB) [> 2.8738 = 4.7896 < 6.2265] w=0.0344 to align # Constraint # added constraint: constraint((T0372)Y125.CB, (T0372)L275.CB) [> 4.4532 = 7.4220 < 9.6486] w=0.0344 to align # Constraint # added constraint: constraint((T0372)N250.CB, (T0372)H298.CB) [> 3.2029 = 5.3382 < 6.9396] w=0.0344 to align # Constraint # added constraint: constraint((T0372)S281.CB, (T0372)M292.CB) [> 4.6538 = 7.7563 < 10.0832] w=0.0344 to align # Constraint # added constraint: constraint((T0372)C176.CB, (T0372)R191.CB) [> 3.7424 = 6.2373 < 8.1085] w=0.0344 to align # Constraint # added constraint: constraint((T0372)C27.CB, (T0372)D122.CB) [> 3.3542 = 5.5903 < 7.2674] w=0.0344 to align # Constraint # added constraint: constraint((T0372)R25.CB, (T0372)L126.CB) [> 4.6966 = 7.8277 < 10.1760] w=0.0344 to align # Constraint # added constraint: constraint((T0372)I15.CB, (T0372)C35.CB) [> 3.5661 = 5.9434 < 7.7265] w=0.0344 to align # Constraint # added constraint: constraint((T0372)K5.CB, (T0372)D49.CB) [> 2.1869 = 3.6449 < 4.7383] w=0.0344 to align # Constraint # added constraint: constraint((T0372)L73.CB, (T0372)M100.CB) [> 4.6197 = 7.6995 < 10.0093] w=0.0344 to align # Constraint # added constraint: constraint((T0372)R192.CB, (T0372)F201.CB) [> 4.0366 = 6.7276 < 8.7459] w=0.0343 to align # Constraint # added constraint: constraint((T0372)L104.CB, (T0372)T115.CB) [> 3.7502 = 6.2503 < 8.1254] w=0.0343 to align # Constraint # added constraint: constraint((T0372)L288.CB, (T0372)H298.CB) [> 4.7108 = 7.8514 < 10.2068] w=0.0343 to align # Constraint # added constraint: constraint((T0372)V235.CB, (T0372)I264.CB) [> 4.1253 = 6.8755 < 8.9381] w=0.0343 to align # Constraint # added constraint: constraint((T0372)A203.CB, (T0372)I226.CB) [> 4.1868 = 6.9781 < 9.0715] w=0.0343 to align # Constraint # added constraint: constraint((T0372)S30.CB, (T0372)Y64.CB) [> 3.2301 = 5.3835 < 6.9985] w=0.0343 to align # Constraint # added constraint: constraint((T0372)I2.CB, (T0372)A46.CB) [> 3.1917 = 5.3196 < 6.9154] w=0.0342 to align # Constraint # added constraint: constraint((T0372)I2.CB, (T0372)I48.CB) [> 4.3839 = 7.3065 < 9.4984] w=0.0342 to align # Constraint # added constraint: constraint((T0372)K134.CB, (T0372)M248.CB) [> 3.8104 = 6.3507 < 8.2559] w=0.0342 to align # Constraint # added constraint: constraint((T0372)N26.CB, (T0372)S98.CB) [> 3.8888 = 6.4814 < 8.4258] w=0.0342 to align # Constraint # added constraint: constraint((T0372)S30.CB, (T0372)W57.CB) [> 4.6928 = 7.8213 < 10.1677] w=0.0342 to align # Constraint # added constraint: constraint((T0372)F31.CB, (T0372)L62.CB) [> 2.9591 = 4.9319 < 6.4114] w=0.0342 to align # Constraint # added constraint: constraint((T0372)N33.CB, (T0372)A58.CB) [> 4.6837 = 7.8062 < 10.1481] w=0.0342 to align # Constraint # added constraint: constraint((T0372)L34.CB, (T0372)Y64.CB) [> 3.0339 = 5.0566 < 6.5735] w=0.0342 to align # Constraint # added constraint: constraint((T0372)C35.CB, (T0372)F45.CB) [> 4.6829 = 7.8049 < 10.1463] w=0.0342 to align # Constraint # added constraint: constraint((T0372)A17.CB, (T0372)P67.CB) [> 4.3632 = 7.2720 < 9.4536] w=0.0342 to align # Constraint # added constraint: constraint((T0372)I15.CB, (T0372)Y64.CB) [> 3.6364 = 6.0607 < 7.8789] w=0.0342 to align # Constraint # added constraint: constraint((T0372)I15.CB, (T0372)F54.CB) [> 2.9295 = 4.8826 < 6.3473] w=0.0342 to align # Constraint # added constraint: constraint((T0372)F91.CB, (T0372)F112.CB) [> 4.1992 = 6.9986 < 9.0982] w=0.0342 to align # Constraint # added constraint: constraint((T0372)F91.CB, (T0372)L104.CB) [> 4.4687 = 7.4479 < 9.6822] w=0.0342 to align # Constraint # added constraint: constraint((T0372)M65.CB, (T0372)F91.CB) [> 4.2032 = 7.0054 < 9.1070] w=0.0342 to align # Constraint # added constraint: constraint((T0372)A63.CB, (T0372)V76.CB) [> 3.1709 = 5.2847 < 6.8702] w=0.0342 to align # Constraint # added constraint: constraint((T0372)Q61.CB, (T0372)L94.CB) [> 4.4125 = 7.3542 < 9.5605] w=0.0342 to align # Constraint # added constraint: constraint((T0372)W37.CB, (T0372)A58.CB) [> 4.1422 = 6.9036 < 8.9747] w=0.0342 to align # Constraint # added constraint: constraint((T0372)N99.CB, (T0372)Y120.CB) [> 4.7220 = 7.8699 < 10.2309] w=0.0342 to align # Constraint # added constraint: constraint((T0372)M93.CB, (T0372)F112.CB) [> 4.2666 = 7.1109 < 9.2442] w=0.0342 to align # Constraint # added constraint: constraint((T0372)M93.CB, (T0372)L108.CB) [> 4.6062 = 7.6770 < 9.9801] w=0.0342 to align # Constraint # added constraint: constraint((T0372)C92.CB, (T0372)E116.CB) [> 4.1511 = 6.9186 < 8.9941] w=0.0342 to align # Constraint # added constraint: constraint((T0372)C92.CB, (T0372)T115.CB) [> 3.8081 = 6.3468 < 8.2508] w=0.0342 to align # Constraint # added constraint: constraint((T0372)N33.CB, (T0372)A193.CB) [> 3.5340 = 5.8901 < 7.6571] w=0.0342 to align # Constraint # added constraint: constraint((T0372)P153.CB, (T0372)A254.CB) [> 3.6209 = 6.0349 < 7.8454] w=0.0342 to align # Constraint # added constraint: constraint((T0372)Y152.CB, (T0372)A254.CB) [> 3.5286 = 5.8810 < 7.6453] w=0.0342 to align # Constraint # added constraint: constraint((T0372)L133.CB, (T0372)Y152.CB) [> 3.9670 = 6.6116 < 8.5951] w=0.0342 to align # Constraint # added constraint: constraint((T0372)M100.CB, (T0372)F114.CB) [> 4.5153 = 7.5255 < 9.7831] w=0.0342 to align # Constraint # added constraint: constraint((T0372)E236.CB, (T0372)I287.CB) [> 4.6296 = 7.7160 < 10.0308] w=0.0340 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)T207.CB) [> 4.6273 = 7.7121 < 10.0258] w=0.0340 to align # Constraint # added constraint: constraint((T0372)L169.CB, (T0372)Y196.CB) [> 4.7244 = 7.8740 < 10.2362] w=0.0340 to align # Constraint # added constraint: constraint((T0372)L169.CB, (T0372)R192.CB) [> 4.5820 = 7.6366 < 9.9276] w=0.0339 to align # Constraint # added constraint: constraint((T0372)V233.CB, (T0372)G271.CA) [> 4.7486 = 7.9144 < 10.2887] w=0.0338 to align # Constraint # added constraint: constraint((T0372)S32.CB, (T0372)M66.CB) [> 4.0142 = 6.6903 < 8.6974] w=0.0338 to align # Constraint # added constraint: constraint((T0372)C35.CB, (T0372)K55.CB) [> 4.2834 = 7.1389 < 9.2806] w=0.0337 to align # Constraint # added constraint: constraint((T0372)H199.CB, (T0372)G223.CA) [> 4.4870 = 7.4783 < 9.7218] w=0.0336 to align # Constraint # added constraint: constraint((T0372)I15.CB, (T0372)S36.CB) [> 3.5530 = 5.9217 < 7.6982] w=0.0331 to align # Constraint # added constraint: constraint((T0372)S36.CB, (T0372)K55.CB) [> 3.5210 = 5.8682 < 7.6287] w=0.0331 to align # Constraint # added constraint: constraint((T0372)L80.CB, (T0372)C92.CB) [> 4.7460 = 7.9100 < 10.2830] w=0.0331 to align # Constraint # added constraint: constraint((T0372)L94.CB, (T0372)L104.CB) [> 4.1513 = 6.9188 < 8.9945] w=0.0331 to align # Constraint # added constraint: constraint((T0372)L34.CB, (T0372)A193.CB) [> 4.0431 = 6.7385 < 8.7600] w=0.0172 to align # Constraint # added constraint: constraint((T0372)L34.CB, (T0372)N200.CB) [> 3.4580 = 5.7633 < 7.4923] w=0.0172 to align # Constraint # added constraint: constraint((T0372)C35.CB, (T0372)F54.CB) [> 4.2160 = 7.0266 < 9.1347] w=0.0172 to align # Constraint # added constraint: constraint((T0372)C35.CB, (T0372)F56.CB) [> 3.7208 = 6.2014 < 8.0618] w=0.0172 to align # Constraint # added constraint: constraint((T0372)S36.CB, (T0372)F54.CB) [> 3.9707 = 6.6178 < 8.6032] w=0.0172 to align # Constraint # added constraint: constraint((T0372)S36.CB, (T0372)Y196.CB) [> 3.3331 = 5.5552 < 7.2217] w=0.0172 to align # Constraint # added constraint: constraint((T0372)S36.CB, (T0372)H199.CB) [> 4.1891 = 6.9819 < 9.0765] w=0.0172 to align # Constraint # added constraint: constraint((T0372)N33.CB, (T0372)Y196.CB) [> 3.3386 = 5.5644 < 7.2337] w=0.0172 to align # Constraint # added constraint: constraint((T0372)S32.CB, (T0372)P67.CB) [> 4.4114 = 7.3523 < 9.5580] w=0.0172 to align # Constraint # added constraint: constraint((T0372)S32.CB, (T0372)K55.CB) [> 4.1566 = 6.9276 < 9.0059] w=0.0172 to align # Constraint # added constraint: constraint((T0372)S32.CB, (T0372)F54.CB) [> 2.6671 = 4.4452 < 5.7788] w=0.0172 to align # Constraint # added constraint: constraint((T0372)I48.CB, (T0372)V68.CB) [> 4.6439 = 7.7399 < 10.0618] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Q44.CB, (T0372)A58.CB) [> 3.7625 = 6.2708 < 8.1520] w=0.0172 to align # Constraint # added constraint: constraint((T0372)W37.CB, (T0372)N200.CB) [> 3.5247 = 5.8745 < 7.6368] w=0.0172 to align # Constraint # added constraint: constraint((T0372)W37.CB, (T0372)Y196.CB) [> 2.8668 = 4.7779 < 6.2113] w=0.0172 to align # Constraint # added constraint: constraint((T0372)W37.CB, (T0372)F54.CB) [> 4.2220 = 7.0367 < 9.1477] w=0.0172 to align # Constraint # added constraint: constraint((T0372)I15.CB, (T0372)L34.CB) [> 3.7488 = 6.2481 < 8.1225] w=0.0172 to align # Constraint # added constraint: constraint((T0372)L9.CB, (T0372)L34.CB) [> 4.4278 = 7.3797 < 9.5935] w=0.0172 to align # Constraint # added constraint: constraint((T0372)L9.CB, (T0372)L29.CB) [> 4.4278 = 7.3797 < 9.5935] w=0.0172 to align # Constraint # added constraint: constraint((T0372)F31.CB, (T0372)F45.CB) [> 4.1837 = 6.9728 < 9.0647] w=0.0172 to align # Constraint # added constraint: constraint((T0372)L29.CB, (T0372)K55.CB) [> 3.8525 = 6.4209 < 8.3471] w=0.0172 to align # Constraint # added constraint: constraint((T0372)L29.CB, (T0372)F54.CB) [> 2.9122 = 4.8537 < 6.3098] w=0.0172 to align # Constraint # added constraint: constraint((T0372)L29.CB, (T0372)F45.CB) [> 4.1115 = 6.8526 < 8.9083] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y125.CB, (T0372)C294.CB) [> 3.5988 = 5.9980 < 7.7974] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y125.CB, (T0372)I264.CB) [> 2.5590 = 4.2650 < 5.5444] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y125.CB, (T0372)Y263.CB) [> 3.9686 = 6.6143 < 8.5986] w=0.0172 to align # Constraint # added constraint: constraint((T0372)I124.CB, (T0372)L295.CB) [> 3.9176 = 6.5294 < 8.4882] w=0.0172 to align # Constraint # added constraint: constraint((T0372)I124.CB, (T0372)L275.CB) [> 4.3153 = 7.1922 < 9.3498] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y123.CB, (T0372)L295.CB) [> 2.4504 = 4.0839 < 5.3091] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y123.CB, (T0372)C294.CB) [> 4.3106 = 7.1844 < 9.3397] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y123.CB, (T0372)M292.CB) [> 4.1692 = 6.9487 < 9.0333] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y123.CB, (T0372)Y291.CB) [> 2.3957 = 3.9928 < 5.1906] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y123.CB, (T0372)L288.CB) [> 4.5060 = 7.5101 < 9.7631] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y123.CB, (T0372)A278.CB) [> 3.6111 = 6.0184 < 7.8240] w=0.0172 to align # Constraint # added constraint: constraint((T0372)D122.CB, (T0372)D297.CB) [> 4.1245 = 6.8741 < 8.9364] w=0.0172 to align # Constraint # added constraint: constraint((T0372)A121.CB, (T0372)L295.CB) [> 3.0064 = 5.0106 < 6.5138] w=0.0172 to align # Constraint # added constraint: constraint((T0372)A121.CB, (T0372)L275.CB) [> 4.1744 = 6.9574 < 9.0446] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y120.CB, (T0372)L295.CB) [> 3.8969 = 6.4948 < 8.4432] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y120.CB, (T0372)L275.CB) [> 4.3694 = 7.2823 < 9.4670] w=0.0172 to align # Constraint # added constraint: constraint((T0372)A131.CB, (T0372)I145.CB) [> 3.7622 = 6.2702 < 8.1513] w=0.0172 to align # Constraint # added constraint: constraint((T0372)L130.CB, (T0372)I264.CB) [> 3.7008 = 6.1680 < 8.0184] w=0.0172 to align # Constraint # added constraint: constraint((T0372)L130.CB, (T0372)I262.CB) [> 3.7015 = 6.1692 < 8.0199] w=0.0172 to align # Constraint # added constraint: constraint((T0372)D129.CB, (T0372)Y263.CB) [> 3.6146 = 6.0243 < 7.8316] w=0.0172 to align # Constraint # added constraint: constraint((T0372)L126.CB, (T0372)Y263.CB) [> 3.4156 = 5.6926 < 7.4004] w=0.0172 to align # Constraint # added constraint: constraint((T0372)L126.CB, (T0372)I262.CB) [> 4.1302 = 6.8837 < 8.9488] w=0.0172 to align # Constraint # added constraint: constraint((T0372)N70.CB, (T0372)L94.CB) [> 3.1784 = 5.2973 < 6.8865] w=0.0172 to align # Constraint # added constraint: constraint((T0372)N70.CB, (T0372)C92.CB) [> 2.6601 = 4.4335 < 5.7635] w=0.0172 to align # Constraint # added constraint: constraint((T0372)G69.CA, (T0372)L94.CB) [> 4.4274 = 7.3790 < 9.5927] w=0.0172 to align # Constraint # added constraint: constraint((T0372)M66.CB, (T0372)C92.CB) [> 4.0014 = 6.6689 < 8.6696] w=0.0172 to align # Constraint # added constraint: constraint((T0372)M65.CB, (T0372)F114.CB) [> 4.5178 = 7.5296 < 9.7885] w=0.0172 to align # Constraint # added constraint: constraint((T0372)M65.CB, (T0372)C97.CB) [> 3.7009 = 6.1682 < 8.0187] w=0.0172 to align # Constraint # added constraint: constraint((T0372)M65.CB, (T0372)G95.CA) [> 3.3789 = 5.6315 < 7.3209] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y64.CB, (T0372)V96.CB) [> 4.6262 = 7.7102 < 10.0233] w=0.0172 to align # Constraint # added constraint: constraint((T0372)A63.CB, (T0372)G95.CA) [> 3.8674 = 6.4457 < 8.3794] w=0.0172 to align # Constraint # added constraint: constraint((T0372)A58.CB, (T0372)F91.CB) [> 3.6379 = 6.0632 < 7.8822] w=0.0172 to align # Constraint # added constraint: constraint((T0372)F54.CB, (T0372)V96.CB) [> 4.0910 = 6.8184 < 8.8639] w=0.0172 to align # Constraint # added constraint: constraint((T0372)A119.CB, (T0372)L295.CB) [> 2.5394 = 4.2323 < 5.5020] w=0.0172 to align # Constraint # added constraint: constraint((T0372)V96.CB, (T0372)R118.CB) [> 4.3990 = 7.3317 < 9.5312] w=0.0172 to align # Constraint # added constraint: constraint((T0372)T115.CB, (T0372)K277.CB) [> 4.2376 = 7.0627 < 9.1816] w=0.0172 to align # Constraint # added constraint: constraint((T0372)I195.CB, (T0372)T207.CB) [> 4.6603 = 7.7672 < 10.0973] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Q283.CB, (T0372)M292.CB) [> 3.9993 = 6.6655 < 8.6651] w=0.0172 to align # Constraint # added constraint: constraint((T0372)E236.CB, (T0372)I264.CB) [> 4.7153 = 7.8589 < 10.2165] w=0.0172 to align # Constraint # added constraint: constraint((T0372)F91.CB, (T0372)A293.CB) [> 3.1543 = 5.2571 < 6.8342] w=0.0172 to align # Constraint # added constraint: constraint((T0372)C92.CB, (T0372)A293.CB) [> 4.2871 = 7.1451 < 9.2886] w=0.0172 to align # Constraint # added constraint: constraint((T0372)M93.CB, (T0372)A293.CB) [> 4.2273 = 7.0455 < 9.1592] w=0.0172 to align # Constraint # added constraint: constraint((T0372)I113.CB, (T0372)K296.CB) [> 3.8677 = 6.4461 < 8.3799] w=0.0172 to align # Constraint # added constraint: constraint((T0372)R111.CB, (T0372)K296.CB) [> 3.3919 = 5.6532 < 7.3491] w=0.0172 to align # Constraint # added constraint: constraint((T0372)V96.CB, (T0372)K290.CB) [> 4.1468 = 6.9113 < 8.9846] w=0.0172 to align # Constraint # added constraint: constraint((T0372)R24.CB, (T0372)I124.CB) [> 3.1933 = 5.3222 < 6.9188] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y41.CB, (T0372)A193.CB) [> 2.9861 = 4.9768 < 6.4698] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y41.CB, (T0372)E190.CB) [> 4.6908 = 7.8181 < 10.1635] w=0.0172 to align # Constraint # added constraint: constraint((T0372)L29.CB, (T0372)G232.CA) [> 4.5127 = 7.5211 < 9.7775] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y125.CB, (T0372)Y282.CB) [> 2.8036 = 4.6726 < 6.0745] w=0.0172 to align # Constraint # added constraint: constraint((T0372)I124.CB, (T0372)T286.CB) [> 4.4132 = 7.3553 < 9.5619] w=0.0172 to align # Constraint # added constraint: constraint((T0372)I124.CB, (T0372)V285.CB) [> 2.8740 = 4.7899 < 6.2269] w=0.0172 to align # Constraint # added constraint: constraint((T0372)I124.CB, (T0372)P284.CB) [> 4.7724 = 7.9540 < 10.3402] w=0.0172 to align # Constraint # added constraint: constraint((T0372)R266.CB, (T0372)I287.CB) [> 4.2945 = 7.1575 < 9.3047] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y246.CB, (T0372)I272.CB) [> 4.5756 = 7.6261 < 9.9139] w=0.0172 to align # Constraint # added constraint: constraint((T0372)E236.CB, (T0372)I272.CB) [> 3.8146 = 6.3576 < 8.2649] w=0.0172 to align # Constraint # added constraint: constraint((T0372)G208.CA, (T0372)I217.CB) [> 3.6055 = 6.0092 < 7.8120] w=0.0172 to align # Constraint # added constraint: constraint((T0372)I195.CB, (T0372)G208.CA) [> 4.1813 = 6.9688 < 9.0595] w=0.0172 to align # Constraint # added constraint: constraint((T0372)A119.CB, (T0372)R266.CB) [> 2.3689 = 3.9481 < 5.1325] w=0.0172 to align # Constraint # added constraint: constraint((T0372)E116.CB, (T0372)C294.CB) [> 3.8732 = 6.4553 < 8.3919] w=0.0172 to align # Constraint # added constraint: constraint((T0372)T115.CB, (T0372)Y291.CB) [> 3.6668 = 6.1113 < 7.9447] w=0.0172 to align # Constraint # added constraint: constraint((T0372)I124.CB, (T0372)Q283.CB) [> 3.4757 = 5.7929 < 7.5308] w=0.0172 to align # Constraint # added constraint: constraint((T0372)I124.CB, (T0372)Y282.CB) [> 3.9008 = 6.5013 < 8.4517] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y123.CB, (T0372)V285.CB) [> 4.6947 = 7.8244 < 10.1717] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y123.CB, (T0372)P284.CB) [> 3.6842 = 6.1404 < 7.9825] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y123.CB, (T0372)Y282.CB) [> 2.5329 = 4.2215 < 5.4879] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y123.CB, (T0372)I264.CB) [> 3.8531 = 6.4218 < 8.3483] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y123.CB, (T0372)Y263.CB) [> 4.5182 = 7.5304 < 9.7895] w=0.0172 to align # Constraint # added constraint: constraint((T0372)A121.CB, (T0372)R266.CB) [> 3.5689 = 5.9481 < 7.7325] w=0.0172 to align # Constraint # added constraint: constraint((T0372)A121.CB, (T0372)E273.CB) [> 3.8677 = 6.4461 < 8.3800] w=0.0172 to align # Constraint # added constraint: constraint((T0372)A121.CB, (T0372)P284.CB) [> 3.0302 = 5.0503 < 6.5654] w=0.0172 to align # Constraint # added constraint: constraint((T0372)D122.CB, (T0372)Y261.CB) [> 3.8175 = 6.3626 < 8.2713] w=0.0172 to align # Constraint # added constraint: constraint((T0372)D122.CB, (T0372)V285.CB) [> 3.8605 = 6.4342 < 8.3645] w=0.0172 to align # Constraint # added constraint: constraint((T0372)V235.CB, (T0372)Y263.CB) [> 2.7173 = 4.5288 < 5.8875] w=0.0172 to align # Constraint # added constraint: constraint((T0372)V178.CB, (T0372)V218.CB) [> 4.6205 = 7.7008 < 10.0111] w=0.0172 to align # Constraint # added constraint: constraint((T0372)Y246.CB, (T0372)G274.CA) [> 3.7972 = 6.3286 < 8.2272] w=0.0172 to align # Constraint # added constraint: constraint((T0372)I160.CB, (T0372)E190.CB) [> 4.7774 = 7.9623 < 10.3510] w=0.0171 to align # Constraint # added constraint: constraint((T0372)A278.CB, (T0372)M292.CB) [> 3.6107 = 6.0179 < 7.8232] w=0.0171 to align # Constraint # added constraint: constraint((T0372)V96.CB, (T0372)F112.CB) [> 4.4295 = 7.3825 < 9.5972] w=0.0171 to align # Constraint # added constraint: constraint((T0372)C92.CB, (T0372)I113.CB) [> 3.8380 = 6.3967 < 8.3157] w=0.0171 to align # Constraint # added constraint: constraint((T0372)L62.CB, (T0372)G95.CA) [> 4.7390 = 7.8984 < 10.2679] w=0.0171 to align # Constraint # added constraint: constraint((T0372)F31.CB, (T0372)C92.CB) [> 3.9730 = 6.6217 < 8.6082] w=0.0171 to align # Constraint # added constraint: constraint((T0372)I15.CB, (T0372)M66.CB) [> 3.7576 = 6.2627 < 8.1416] w=0.0171 to align # Constraint # added constraint: constraint((T0372)L104.CB, (T0372)I113.CB) [> 4.5764 = 7.6274 < 9.9156] w=0.0171 to align # Constraint # added constraint: constraint((T0372)G95.CA, (T0372)Y125.CB) [> 4.5599 = 7.5998 < 9.8797] w=0.0171 to align # Constraint # added constraint: constraint((T0372)C181.CB, (T0372)E267.CB) [> 2.9101 = 4.8501 < 6.3052] w=0.0169 to align # Constraint # added constraint: constraint((T0372)N179.CB, (T0372)E268.CB) [> 3.7495 = 6.2491 < 8.1238] w=0.0169 to align # Constraint # added constraint: constraint((T0372)C168.CB, (T0372)H212.CB) [> 4.0154 = 6.6923 < 8.7000] w=0.0169 to align # Constraint # added constraint: constraint((T0372)I210.CB, (T0372)G223.CA) [> 4.6397 = 7.7328 < 10.0527] w=0.0169 to align # Constraint # added constraint: constraint((T0372)I210.CB, (T0372)F222.CB) [> 3.2788 = 5.4646 < 7.1040] w=0.0169 to align # Constraint # added constraint: constraint((T0372)V218.CB, (T0372)E236.CB) [> 4.3071 = 7.1785 < 9.3321] w=0.0168 to align # Constraint # added constraint: constraint((T0372)G232.CA, (T0372)K279.CB) [> 4.4423 = 7.4038 < 9.6249] w=0.0168 to align # Constraint # added constraint: constraint((T0372)A63.CB, (T0372)K141.CB) [> 4.3568 = 7.2613 < 9.4397] w=0.0166 to align # Constraint # added constraint: constraint((T0372)A63.CB, (T0372)F138.CB) [> 4.7761 = 7.9601 < 10.3482] w=0.0166 to align # Constraint # added constraint: constraint((T0372)Q61.CB, (T0372)F138.CB) [> 4.0427 = 6.7379 < 8.7592] w=0.0166 to align # Constraint # added constraint: constraint((T0372)G59.CA, (T0372)K141.CB) [> 4.3331 = 7.2219 < 9.3885] w=0.0166 to align # Constraint # added constraint: constraint((T0372)S36.CB, (T0372)M66.CB) [> 4.5518 = 7.5863 < 9.8623] w=0.0166 to align # Constraint # added constraint: constraint((T0372)S36.CB, (T0372)M65.CB) [> 4.4043 = 7.3404 < 9.5425] w=0.0166 to align # Constraint # added constraint: constraint((T0372)C35.CB, (T0372)M66.CB) [> 4.3490 = 7.2484 < 9.4229] w=0.0166 to align # Constraint # added constraint: constraint((T0372)M66.CB, (T0372)M100.CB) [> 4.7718 = 7.9530 < 10.3390] w=0.0166 to align # Constraint # added constraint: constraint((T0372)I15.CB, (T0372)M65.CB) [> 4.1009 = 6.8349 < 8.8854] w=0.0166 to align # Constraint # added constraint: constraint((T0372)D28.CB, (T0372)C97.CB) [> 4.5408 = 7.5679 < 9.8383] w=0.0166 to align # Constraint # added constraint: constraint((T0372)F91.CB, (T0372)I160.CB) [> 4.0959 = 6.8266 < 8.8745] w=0.0166 to align # Constraint # added constraint: constraint((T0372)C92.CB, (T0372)I160.CB) [> 4.3795 = 7.2992 < 9.4889] w=0.0166 to align # Constraint # added constraint: constraint((T0372)M93.CB, (T0372)L130.CB) [> 4.6248 = 7.7080 < 10.0205] w=0.0166 to align # Constraint # added constraint: constraint((T0372)C97.CB, (T0372)Y152.CB) [> 4.7822 = 7.9704 < 10.3615] w=0.0166 to align # Constraint # added constraint: constraint((T0372)T207.CB, (T0372)G232.CA) [> 4.3900 = 7.3166 < 9.5116] w=0.0019 to align # Constraint # added constraint: constraint((T0372)T207.CB, (T0372)I264.CB) [> 3.6008 = 6.0013 < 7.8017] w=0.0019 to align # Constraint # added constraint: constraint((T0372)T221.CB, (T0372)G271.CA) [> 4.5835 = 7.6391 < 9.9309] w=0.0019 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0372/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0372/decoys/ # ReadConformPDB reading from PDB file T0372.chimera.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 302 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/T0372.model1_renum.pdb.gz looking for chain 'A' model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation dimer//model1_renum # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 Skipped atom 482, because occupancy 1 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 484, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 486, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 488, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 574, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 576, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 578, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 580, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 938, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 940, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 942, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 944, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 239 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 35 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 WARNING: atom 1 has residue number 5 < previous residue 291 in servers/POMYSL_TS4.pdb.gz # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 WARNING: atom 1 has residue number 98 < previous residue 305 in servers/POMYSL_TS5.pdb.gz # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 250 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0372)M1.CA and (T0372)M1.CB only 0.000 apart, marking (T0372)M1.CB as missing WARNING: atoms too close: (T0372)F4.CA and (T0372)F4.CB only 0.000 apart, marking (T0372)F4.CB as missing WARNING: atoms too close: (T0372)I7.CA and (T0372)I7.CB only 0.000 apart, marking (T0372)I7.CB as missing WARNING: atoms too close: (T0372)T16.CA and (T0372)T16.CB only 0.000 apart, marking (T0372)T16.CB as missing WARNING: atoms too close: (T0372)M20.CA and (T0372)M20.CB only 0.000 apart, marking (T0372)M20.CB as missing WARNING: atoms too close: (T0372)C35.CA and (T0372)C35.CB only 0.000 apart, marking (T0372)C35.CB as missing WARNING: atoms too close: (T0372)Y41.CA and (T0372)Y41.CB only 0.000 apart, marking (T0372)Y41.CB as missing WARNING: atoms too close: (T0372)I48.CA and (T0372)I48.CB only 0.000 apart, marking (T0372)I48.CB as missing WARNING: atoms too close: (T0372)D49.CA and (T0372)D49.CB only 0.000 apart, marking (T0372)D49.CB as missing WARNING: atoms too close: (T0372)F56.CA and (T0372)F56.CB only 0.000 apart, marking (T0372)F56.CB as missing WARNING: atoms too close: (T0372)W57.CA and (T0372)W57.CB only 0.000 apart, marking (T0372)W57.CB as missing WARNING: atoms too close: (T0372)N90.CA and (T0372)N90.CB only 0.000 apart, marking (T0372)N90.CB as missing WARNING: atoms too close: (T0372)F91.CA and (T0372)F91.CB only 0.000 apart, marking (T0372)F91.CB as missing WARNING: atoms too close: (T0372)C92.CA and (T0372)C92.CB only 0.000 apart, marking (T0372)C92.CB as missing WARNING: atoms too close: (T0372)M93.CA and (T0372)M93.CB only 0.000 apart, marking (T0372)M93.CB as missing WARNING: atoms too close: (T0372)C97.CA and (T0372)C97.CB only 0.000 apart, marking (T0372)C97.CB as missing WARNING: atoms too close: (T0372)E105.CA and (T0372)E105.CB only 0.000 apart, marking (T0372)E105.CB as missing WARNING: atoms too close: (T0372)P109.CA and (T0372)P109.CB only 0.000 apart, marking (T0372)P109.CB as missing WARNING: atoms too close: (T0372)Y120.CA and (T0372)Y120.CB only 0.000 apart, marking (T0372)Y120.CB as missing WARNING: atoms too close: (T0372)L130.CA and (T0372)L130.CB only 0.000 apart, marking (T0372)L130.CB as missing WARNING: atoms too close: (T0372)L133.CA and (T0372)L133.CB only 0.000 apart, marking (T0372)L133.CB as missing WARNING: atoms too close: (T0372)H144.CA and (T0372)H144.CB only 0.000 apart, marking (T0372)H144.CB as missing WARNING: atoms too close: (T0372)R147.CA and (T0372)R147.CB only 0.000 apart, marking (T0372)R147.CB as missing WARNING: atoms too close: (T0372)Y152.CA and (T0372)Y152.CB only 0.000 apart, marking (T0372)Y152.CB as missing WARNING: atoms too close: (T0372)Y157.CA and (T0372)Y157.CB only 0.000 apart, marking (T0372)Y157.CB as missing WARNING: atoms too close: (T0372)D163.CA and (T0372)D163.CB only 0.000 apart, marking (T0372)D163.CB as missing WARNING: atoms too close: (T0372)C168.CA and (T0372)C168.CB only 0.000 apart, marking (T0372)C168.CB as missing WARNING: atoms too close: (T0372)L171.CA and (T0372)L171.CB only 0.000 apart, marking (T0372)L171.CB as missing WARNING: atoms too close: (T0372)A173.CA and (T0372)A173.CB only 0.000 apart, marking (T0372)A173.CB as missing WARNING: atoms too close: (T0372)V178.CA and (T0372)V178.CB only 0.000 apart, marking (T0372)V178.CB as missing WARNING: atoms too close: (T0372)N179.CA and (T0372)N179.CB only 0.000 apart, marking (T0372)N179.CB as missing WARNING: atoms too close: (T0372)R192.CA and (T0372)R192.CB only 0.000 apart, marking (T0372)R192.CB as missing WARNING: atoms too close: (T0372)I195.CA and (T0372)I195.CB only 0.000 apart, marking (T0372)I195.CB as missing WARNING: atoms too close: (T0372)L198.CA and (T0372)L198.CB only 0.000 apart, marking (T0372)L198.CB as missing WARNING: atoms too close: (T0372)N200.CA and (T0372)N200.CB only 0.000 apart, marking (T0372)N200.CB as missing WARNING: atoms too close: (T0372)F201.CA and (T0372)F201.CB only 0.000 apart, marking (T0372)F201.CB as missing WARNING: atoms too close: (T0372)A203.CA and (T0372)A203.CB only 0.000 apart, marking (T0372)A203.CB as missing WARNING: atoms too close: (T0372)L206.CA and (T0372)L206.CB only 0.000 apart, marking (T0372)L206.CB as missing WARNING: atoms too close: (T0372)L211.CA and (T0372)L211.CB only 0.000 apart, marking (T0372)L211.CB as missing WARNING: atoms too close: (T0372)I217.CA and (T0372)I217.CB only 0.000 apart, marking (T0372)I217.CB as missing WARNING: atoms too close: (T0372)F220.CA and (T0372)F220.CB only 0.000 apart, marking (T0372)F220.CB as missing WARNING: atoms too close: (T0372)V233.CA and (T0372)V233.CB only 0.000 apart, marking (T0372)V233.CB as missing WARNING: atoms too close: (T0372)T240.CA and (T0372)T240.CB only 0.000 apart, marking (T0372)T240.CB as missing WARNING: atoms too close: (T0372)Y246.CA and (T0372)Y246.CB only 0.000 apart, marking (T0372)Y246.CB as missing WARNING: atoms too close: (T0372)A247.CA and (T0372)A247.CB only 0.000 apart, marking (T0372)A247.CB as missing WARNING: atoms too close: (T0372)Y251.CA and (T0372)Y251.CB only 0.000 apart, marking (T0372)Y251.CB as missing WARNING: atoms too close: (T0372)N255.CA and (T0372)N255.CB only 0.000 apart, marking (T0372)N255.CB as missing WARNING: atoms too close: (T0372)P258.CA and (T0372)P258.CB only 0.000 apart, marking (T0372)P258.CB as missing WARNING: atoms too close: (T0372)R266.CA and (T0372)R266.CB only 0.000 apart, marking (T0372)R266.CB as missing WARNING: atoms too close: (T0372)I272.CA and (T0372)I272.CB only 0.000 apart, marking (T0372)I272.CB as missing WARNING: atoms too close: (T0372)L280.CA and (T0372)L280.CB only 0.000 apart, marking (T0372)L280.CB as missing WARNING: atoms too close: (T0372)T286.CA and (T0372)T286.CB only 0.000 apart, marking (T0372)T286.CB as missing WARNING: atoms too close: (T0372)Y291.CA and (T0372)Y291.CB only 0.000 apart, marking (T0372)Y291.CB as missing WARNING: atoms too close: (T0372)K296.CA and (T0372)K296.CB only 0.000 apart, marking (T0372)K296.CB as missing WARNING: atoms too close: (T0372)M300.CA and (T0372)M300.CB only 0.000 apart, marking (T0372)M300.CB as missing WARNING: atoms too close: (T0372)V303.CA and (T0372)V303.CB only 0.000 apart, marking (T0372)V303.CB as missing # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0372)I2.CA and (T0372)I2.CB only 0.000 apart, marking (T0372)I2.CB as missing WARNING: atoms too close: (T0372)I7.CA and (T0372)I7.CB only 0.000 apart, marking (T0372)I7.CB as missing WARNING: atoms too close: (T0372)T16.CA and (T0372)T16.CB only 0.000 apart, marking (T0372)T16.CB as missing WARNING: atoms too close: (T0372)S22.CA and (T0372)S22.CB only 0.000 apart, marking (T0372)S22.CB as missing WARNING: atoms too close: (T0372)N26.CA and (T0372)N26.CB only 0.000 apart, marking (T0372)N26.CB as missing WARNING: atoms too close: (T0372)C35.CA and (T0372)C35.CB only 0.000 apart, marking (T0372)C35.CB as missing WARNING: atoms too close: (T0372)Y41.CA and (T0372)Y41.CB only 0.000 apart, marking (T0372)Y41.CB as missing WARNING: atoms too close: (T0372)Q44.CA and (T0372)Q44.CB only 0.000 apart, marking (T0372)Q44.CB as missing WARNING: atoms too close: (T0372)Y64.CA and (T0372)Y64.CB only 0.000 apart, marking (T0372)Y64.CB as missing WARNING: atoms too close: (T0372)V76.CA and (T0372)V76.CB only 0.000 apart, marking (T0372)V76.CB as missing WARNING: atoms too close: (T0372)R78.CA and (T0372)R78.CB only 0.000 apart, marking (T0372)R78.CB as missing WARNING: atoms too close: (T0372)L104.CA and (T0372)L104.CB only 0.000 apart, marking (T0372)L104.CB as missing WARNING: atoms too close: (T0372)E105.CA and (T0372)E105.CB only 0.000 apart, marking (T0372)E105.CB as missing WARNING: atoms too close: (T0372)E110.CA and (T0372)E110.CB only 0.000 apart, marking (T0372)E110.CB as missing WARNING: atoms too close: (T0372)Y120.CA and (T0372)Y120.CB only 0.000 apart, marking (T0372)Y120.CB as missing WARNING: atoms too close: (T0372)T132.CA and (T0372)T132.CB only 0.000 apart, marking (T0372)T132.CB as missing WARNING: atoms too close: (T0372)L133.CA and (T0372)L133.CB only 0.000 apart, marking (T0372)L133.CB as missing WARNING: atoms too close: (T0372)N146.CA and (T0372)N146.CB only 0.000 apart, marking (T0372)N146.CB as missing WARNING: atoms too close: (T0372)Y157.CA and (T0372)Y157.CB only 0.000 apart, marking (T0372)Y157.CB as missing WARNING: atoms too close: (T0372)R164.CA and (T0372)R164.CB only 0.000 apart, marking (T0372)R164.CB as missing WARNING: atoms too close: (T0372)L171.CA and (T0372)L171.CB only 0.000 apart, marking (T0372)L171.CB as missing WARNING: atoms too close: (T0372)Q183.CA and (T0372)Q183.CB only 0.000 apart, marking (T0372)Q183.CB as missing WARNING: atoms too close: (T0372)Q184.CA and (T0372)Q184.CB only 0.000 apart, marking (T0372)Q184.CB as missing WARNING: atoms too close: (T0372)L194.CA and (T0372)L194.CB only 0.000 apart, marking (T0372)L194.CB as missing WARNING: atoms too close: (T0372)I195.CA and (T0372)I195.CB only 0.000 apart, marking (T0372)I195.CB as missing WARNING: atoms too close: (T0372)A203.CA and (T0372)A203.CB only 0.000 apart, marking (T0372)A203.CB as missing WARNING: atoms too close: (T0372)L204.CA and (T0372)L204.CB only 0.000 apart, marking (T0372)L204.CB as missing WARNING: atoms too close: (T0372)F220.CA and (T0372)F220.CB only 0.000 apart, marking (T0372)F220.CB as missing WARNING: atoms too close: (T0372)H228.CA and (T0372)H228.CB only 0.000 apart, marking (T0372)H228.CB as missing WARNING: atoms too close: (T0372)T240.CA and (T0372)T240.CB only 0.000 apart, marking (T0372)T240.CB as missing WARNING: atoms too close: (T0372)Y246.CA and (T0372)Y246.CB only 0.000 apart, marking (T0372)Y246.CB as missing WARNING: atoms too close: (T0372)A247.CA and (T0372)A247.CB only 0.000 apart, marking (T0372)A247.CB as missing WARNING: atoms too close: (T0372)F253.CA and (T0372)F253.CB only 0.000 apart, marking (T0372)F253.CB as missing WARNING: atoms too close: (T0372)A254.CA and (T0372)A254.CB only 0.000 apart, marking (T0372)A254.CB as missing WARNING: atoms too close: (T0372)E259.CA and (T0372)E259.CB only 0.000 apart, marking (T0372)E259.CB as missing WARNING: atoms too close: (T0372)I272.CA and (T0372)I272.CB only 0.000 apart, marking (T0372)I272.CB as missing WARNING: atoms too close: (T0372)L275.CA and (T0372)L275.CB only 0.000 apart, marking (T0372)L275.CB as missing WARNING: atoms too close: (T0372)S281.CA and (T0372)S281.CB only 0.000 apart, marking (T0372)S281.CB as missing WARNING: atoms too close: (T0372)Q283.CA and (T0372)Q283.CB only 0.000 apart, marking (T0372)Q283.CB as missing WARNING: atoms too close: (T0372)T286.CA and (T0372)T286.CB only 0.000 apart, marking (T0372)T286.CB as missing WARNING: atoms too close: (T0372)H298.CA and (T0372)H298.CB only 0.000 apart, marking (T0372)H298.CB as missing WARNING: atoms too close: (T0372)D301.CA and (T0372)D301.CB only 0.000 apart, marking (T0372)D301.CB as missing WARNING: atoms too close: (T0372)V303.CA and (T0372)V303.CB only 0.000 apart, marking (T0372)V303.CB as missing # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0372)I2.CA and (T0372)I2.CB only 0.000 apart, marking (T0372)I2.CB as missing WARNING: atoms too close: (T0372)F4.CA and (T0372)F4.CB only 0.000 apart, marking (T0372)F4.CB as missing WARNING: atoms too close: (T0372)I7.CA and (T0372)I7.CB only 0.000 apart, marking (T0372)I7.CB as missing WARNING: atoms too close: (T0372)T16.CA and (T0372)T16.CB only 0.000 apart, marking (T0372)T16.CB as missing WARNING: atoms too close: (T0372)S22.CA and (T0372)S22.CB only 0.000 apart, marking (T0372)S22.CB as missing WARNING: atoms too close: (T0372)D28.CA and (T0372)D28.CB only 0.000 apart, marking (T0372)D28.CB as missing WARNING: atoms too close: (T0372)C35.CA and (T0372)C35.CB only 0.000 apart, marking (T0372)C35.CB as missing WARNING: atoms too close: (T0372)Y41.CA and (T0372)Y41.CB only 0.000 apart, marking (T0372)Y41.CB as missing WARNING: atoms too close: (T0372)F45.CA and (T0372)F45.CB only 0.000 apart, marking (T0372)F45.CB as missing WARNING: atoms too close: (T0372)K55.CA and (T0372)K55.CB only 0.000 apart, marking (T0372)K55.CB as missing WARNING: atoms too close: (T0372)F56.CA and (T0372)F56.CB only 0.000 apart, marking (T0372)F56.CB as missing WARNING: atoms too close: (T0372)M66.CA and (T0372)M66.CB only 0.000 apart, marking (T0372)M66.CB as missing WARNING: atoms too close: (T0372)R78.CA and (T0372)R78.CB only 0.000 apart, marking (T0372)R78.CB as missing WARNING: atoms too close: (T0372)D83.CA and (T0372)D83.CB only 0.000 apart, marking (T0372)D83.CB as missing WARNING: atoms too close: (T0372)A84.CA and (T0372)A84.CB only 0.000 apart, marking (T0372)A84.CB as missing WARNING: atoms too close: (T0372)C92.CA and (T0372)C92.CB only 0.000 apart, marking (T0372)C92.CB as missing WARNING: atoms too close: (T0372)L108.CA and (T0372)L108.CB only 0.000 apart, marking (T0372)L108.CB as missing WARNING: atoms too close: (T0372)E110.CA and (T0372)E110.CB only 0.000 apart, marking (T0372)E110.CB as missing WARNING: atoms too close: (T0372)I113.CA and (T0372)I113.CB only 0.000 apart, marking (T0372)I113.CB as missing WARNING: atoms too close: (T0372)E116.CA and (T0372)E116.CB only 0.000 apart, marking (T0372)E116.CB as missing WARNING: atoms too close: (T0372)Y120.CA and (T0372)Y120.CB only 0.000 apart, marking (T0372)Y120.CB as missing WARNING: atoms too close: (T0372)N146.CA and (T0372)N146.CB only 0.000 apart, marking (T0372)N146.CB as missing WARNING: atoms too close: (T0372)Q166.CA and (T0372)Q166.CB only 0.000 apart, marking (T0372)Q166.CB as missing WARNING: atoms too close: (T0372)W175.CA and (T0372)W175.CB only 0.000 apart, marking (T0372)W175.CB as missing WARNING: atoms too close: (T0372)V178.CA and (T0372)V178.CB only 0.000 apart, marking (T0372)V178.CB as missing WARNING: atoms too close: (T0372)Q184.CA and (T0372)Q184.CB only 0.000 apart, marking (T0372)Q184.CB as missing WARNING: atoms too close: (T0372)L194.CA and (T0372)L194.CB only 0.000 apart, marking (T0372)L194.CB as missing WARNING: atoms too close: (T0372)L198.CA and (T0372)L198.CB only 0.000 apart, marking (T0372)L198.CB as missing WARNING: atoms too close: (T0372)N200.CA and (T0372)N200.CB only 0.000 apart, marking (T0372)N200.CB as missing WARNING: atoms too close: (T0372)F201.CA and (T0372)F201.CB only 0.000 apart, marking (T0372)F201.CB as missing WARNING: atoms too close: (T0372)L211.CA and (T0372)L211.CB only 0.000 apart, marking (T0372)L211.CB as missing WARNING: atoms too close: (T0372)N214.CA and (T0372)N214.CB only 0.000 apart, marking (T0372)N214.CB as missing WARNING: atoms too close: (T0372)K216.CA and (T0372)K216.CB only 0.000 apart, marking (T0372)K216.CB as missing WARNING: atoms too close: (T0372)V218.CA and (T0372)V218.CB only 0.000 apart, marking (T0372)V218.CB as missing WARNING: atoms too close: (T0372)T230.CA and (T0372)T230.CB only 0.000 apart, marking (T0372)T230.CB as missing WARNING: atoms too close: (T0372)V235.CA and (T0372)V235.CB only 0.000 apart, marking (T0372)V235.CB as missing WARNING: atoms too close: (T0372)K237.CA and (T0372)K237.CB only 0.000 apart, marking (T0372)K237.CB as missing WARNING: atoms too close: (T0372)S241.CA and (T0372)S241.CB only 0.000 apart, marking (T0372)S241.CB as missing WARNING: atoms too close: (T0372)D243.CA and (T0372)D243.CB only 0.000 apart, marking (T0372)D243.CB as missing WARNING: atoms too close: (T0372)Y246.CA and (T0372)Y246.CB only 0.000 apart, marking (T0372)Y246.CB as missing WARNING: atoms too close: (T0372)E252.CA and (T0372)E252.CB only 0.000 apart, marking (T0372)E252.CB as missing WARNING: atoms too close: (T0372)Y263.CA and (T0372)Y263.CB only 0.000 apart, marking (T0372)Y263.CB as missing WARNING: atoms too close: (T0372)E267.CA and (T0372)E267.CB only 0.000 apart, marking (T0372)E267.CB as missing WARNING: atoms too close: (T0372)I272.CA and (T0372)I272.CB only 0.000 apart, marking (T0372)I272.CB as missing WARNING: atoms too close: (T0372)L280.CA and (T0372)L280.CB only 0.000 apart, marking (T0372)L280.CB as missing WARNING: atoms too close: (T0372)Q283.CA and (T0372)Q283.CB only 0.000 apart, marking (T0372)Q283.CB as missing WARNING: atoms too close: (T0372)P284.CA and (T0372)P284.CB only 0.000 apart, marking (T0372)P284.CB as missing WARNING: atoms too close: (T0372)E289.CA and (T0372)E289.CB only 0.000 apart, marking (T0372)E289.CB as missing WARNING: atoms too close: (T0372)P299.CA and (T0372)P299.CB only 0.000 apart, marking (T0372)P299.CB as missing # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0372)I2.CA and (T0372)I2.CB only 0.000 apart, marking (T0372)I2.CB as missing WARNING: atoms too close: (T0372)P3.CA and (T0372)P3.CB only 0.000 apart, marking (T0372)P3.CB as missing WARNING: atoms too close: (T0372)F18.CA and (T0372)F18.CB only 0.000 apart, marking (T0372)F18.CB as missing WARNING: atoms too close: (T0372)K21.CA and (T0372)K21.CB only 0.000 apart, marking (T0372)K21.CB as missing WARNING: atoms too close: (T0372)S22.CA and (T0372)S22.CB only 0.000 apart, marking (T0372)S22.CB as missing WARNING: atoms too close: (T0372)N26.CA and (T0372)N26.CB only 0.000 apart, marking (T0372)N26.CB as missing WARNING: atoms too close: (T0372)S30.CA and (T0372)S30.CB only 0.000 apart, marking (T0372)S30.CB as missing WARNING: atoms too close: (T0372)L40.CA and (T0372)L40.CB only 0.000 apart, marking (T0372)L40.CB as missing WARNING: atoms too close: (T0372)D42.CA and (T0372)D42.CB only 0.000 apart, marking (T0372)D42.CB as missing WARNING: atoms too close: (T0372)Q44.CA and (T0372)Q44.CB only 0.000 apart, marking (T0372)Q44.CB as missing WARNING: atoms too close: (T0372)D49.CA and (T0372)D49.CB only 0.000 apart, marking (T0372)D49.CB as missing WARNING: atoms too close: (T0372)D50.CA and (T0372)D50.CB only 0.000 apart, marking (T0372)D50.CB as missing WARNING: atoms too close: (T0372)W57.CA and (T0372)W57.CB only 0.000 apart, marking (T0372)W57.CB as missing WARNING: atoms too close: (T0372)A58.CA and (T0372)A58.CB only 0.000 apart, marking (T0372)A58.CB as missing WARNING: atoms too close: (T0372)V68.CA and (T0372)V68.CB only 0.000 apart, marking (T0372)V68.CB as missing WARNING: atoms too close: (T0372)V76.CA and (T0372)V76.CB only 0.000 apart, marking (T0372)V76.CB as missing WARNING: atoms too close: (T0372)D83.CA and (T0372)D83.CB only 0.000 apart, marking (T0372)D83.CB as missing WARNING: atoms too close: (T0372)N90.CA and (T0372)N90.CB only 0.000 apart, marking (T0372)N90.CB as missing WARNING: atoms too close: (T0372)L104.CA and (T0372)L104.CB only 0.000 apart, marking (T0372)L104.CB as missing WARNING: atoms too close: (T0372)R111.CA and (T0372)R111.CB only 0.000 apart, marking (T0372)R111.CB as missing WARNING: atoms too close: (T0372)L126.CA and (T0372)L126.CB only 0.000 apart, marking (T0372)L126.CB as missing WARNING: atoms too close: (T0372)A131.CA and (T0372)A131.CB only 0.000 apart, marking (T0372)A131.CB as missing WARNING: atoms too close: (T0372)R142.CA and (T0372)R142.CB only 0.000 apart, marking (T0372)R142.CB as missing WARNING: atoms too close: (T0372)H144.CA and (T0372)H144.CB only 0.000 apart, marking (T0372)H144.CB as missing WARNING: atoms too close: (T0372)I145.CA and (T0372)I145.CB only 0.000 apart, marking (T0372)I145.CB as missing WARNING: atoms too close: (T0372)N146.CA and (T0372)N146.CB only 0.000 apart, marking (T0372)N146.CB as missing WARNING: atoms too close: (T0372)R164.CA and (T0372)R164.CB only 0.000 apart, marking (T0372)R164.CB as missing WARNING: atoms too close: (T0372)Q166.CA and (T0372)Q166.CB only 0.000 apart, marking (T0372)Q166.CB as missing WARNING: atoms too close: (T0372)C168.CA and (T0372)C168.CB only 0.000 apart, marking (T0372)C168.CB as missing WARNING: atoms too close: (T0372)N189.CA and (T0372)N189.CB only 0.000 apart, marking (T0372)N189.CB as missing WARNING: atoms too close: (T0372)A193.CA and (T0372)A193.CB only 0.000 apart, marking (T0372)A193.CB as missing WARNING: atoms too close: (T0372)L194.CA and (T0372)L194.CB only 0.000 apart, marking (T0372)L194.CB as missing WARNING: atoms too close: (T0372)Y196.CA and (T0372)Y196.CB only 0.000 apart, marking (T0372)Y196.CB as missing WARNING: atoms too close: (T0372)F201.CA and (T0372)F201.CB only 0.000 apart, marking (T0372)F201.CB as missing WARNING: atoms too close: (T0372)L206.CA and (T0372)L206.CB only 0.000 apart, marking (T0372)L206.CB as missing WARNING: atoms too close: (T0372)K216.CA and (T0372)K216.CB only 0.000 apart, marking (T0372)K216.CB as missing WARNING: atoms too close: (T0372)F220.CA and (T0372)F220.CB only 0.000 apart, marking (T0372)F220.CB as missing WARNING: atoms too close: (T0372)H228.CA and (T0372)H228.CB only 0.000 apart, marking (T0372)H228.CB as missing WARNING: atoms too close: (T0372)T240.CA and (T0372)T240.CB only 0.000 apart, marking (T0372)T240.CB as missing WARNING: atoms too close: (T0372)I242.CA and (T0372)I242.CB only 0.000 apart, marking (T0372)I242.CB as missing WARNING: atoms too close: (T0372)K277.CA and (T0372)K277.CB only 0.000 apart, marking (T0372)K277.CB as missing WARNING: atoms too close: (T0372)A278.CA and (T0372)A278.CB only 0.000 apart, marking (T0372)A278.CB as missing WARNING: atoms too close: (T0372)Y282.CA and (T0372)Y282.CB only 0.000 apart, marking (T0372)Y282.CB as missing WARNING: atoms too close: (T0372)Q283.CA and (T0372)Q283.CB only 0.000 apart, marking (T0372)Q283.CB as missing WARNING: atoms too close: (T0372)P284.CA and (T0372)P284.CB only 0.000 apart, marking (T0372)P284.CB as missing WARNING: atoms too close: (T0372)Y291.CA and (T0372)Y291.CB only 0.000 apart, marking (T0372)Y291.CB as missing WARNING: atoms too close: (T0372)A293.CA and (T0372)A293.CB only 0.000 apart, marking (T0372)A293.CB as missing WARNING: atoms too close: (T0372)R304.CA and (T0372)R304.CB only 0.000 apart, marking (T0372)R304.CB as missing # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0372)M1.CA and (T0372)M1.CB only 0.000 apart, marking (T0372)M1.CB as missing WARNING: atoms too close: (T0372)F4.CA and (T0372)F4.CB only 0.000 apart, marking (T0372)F4.CB as missing WARNING: atoms too close: (T0372)R12.CA and (T0372)R12.CB only 0.000 apart, marking (T0372)R12.CB as missing WARNING: atoms too close: (T0372)N26.CA and (T0372)N26.CB only 0.000 apart, marking (T0372)N26.CB as missing WARNING: atoms too close: (T0372)N33.CA and (T0372)N33.CB only 0.000 apart, marking (T0372)N33.CB as missing WARNING: atoms too close: (T0372)A46.CA and (T0372)A46.CB only 0.000 apart, marking (T0372)A46.CB as missing WARNING: atoms too close: (T0372)F54.CA and (T0372)F54.CB only 0.000 apart, marking (T0372)F54.CB as missing WARNING: atoms too close: (T0372)A58.CA and (T0372)A58.CB only 0.000 apart, marking (T0372)A58.CB as missing WARNING: atoms too close: (T0372)N70.CA and (T0372)N70.CB only 0.000 apart, marking (T0372)N70.CB as missing WARNING: atoms too close: (T0372)K88.CA and (T0372)K88.CB only 0.000 apart, marking (T0372)K88.CB as missing WARNING: atoms too close: (T0372)F91.CA and (T0372)F91.CB only 0.000 apart, marking (T0372)F91.CB as missing WARNING: atoms too close: (T0372)S98.CA and (T0372)S98.CB only 0.000 apart, marking (T0372)S98.CB as missing WARNING: atoms too close: (T0372)N99.CA and (T0372)N99.CB only 0.000 apart, marking (T0372)N99.CB as missing WARNING: atoms too close: (T0372)R101.CA and (T0372)R101.CB only 0.000 apart, marking (T0372)R101.CB as missing WARNING: atoms too close: (T0372)D122.CA and (T0372)D122.CB only 0.000 apart, marking (T0372)D122.CB as missing WARNING: atoms too close: (T0372)L126.CA and (T0372)L126.CB only 0.000 apart, marking (T0372)L126.CB as missing WARNING: atoms too close: (T0372)T132.CA and (T0372)T132.CB only 0.000 apart, marking (T0372)T132.CB as missing WARNING: atoms too close: (T0372)R142.CA and (T0372)R142.CB only 0.000 apart, marking (T0372)R142.CB as missing WARNING: atoms too close: (T0372)Y157.CA and (T0372)Y157.CB only 0.000 apart, marking (T0372)Y157.CB as missing WARNING: atoms too close: (T0372)P162.CA and (T0372)P162.CB only 0.000 apart, marking (T0372)P162.CB as missing WARNING: atoms too close: (T0372)Q166.CA and (T0372)Q166.CB only 0.000 apart, marking (T0372)Q166.CB as missing WARNING: atoms too close: (T0372)D170.CA and (T0372)D170.CB only 0.000 apart, marking (T0372)D170.CB as missing WARNING: atoms too close: (T0372)Q183.CA and (T0372)Q183.CB only 0.000 apart, marking (T0372)Q183.CB as missing WARNING: atoms too close: (T0372)Q184.CA and (T0372)Q184.CB only 0.000 apart, marking (T0372)Q184.CB as missing WARNING: atoms too close: (T0372)A197.CA and (T0372)A197.CB only 0.000 apart, marking (T0372)A197.CB as missing WARNING: atoms too close: (T0372)H199.CA and (T0372)H199.CB only 0.000 apart, marking (T0372)H199.CB as missing WARNING: atoms too close: (T0372)F201.CA and (T0372)F201.CB only 0.000 apart, marking (T0372)F201.CB as missing WARNING: atoms too close: (T0372)A203.CA and (T0372)A203.CB only 0.000 apart, marking (T0372)A203.CB as missing WARNING: atoms too close: (T0372)F220.CA and (T0372)F220.CB only 0.000 apart, marking (T0372)F220.CB as missing WARNING: atoms too close: (T0372)T221.CA and (T0372)T221.CB only 0.000 apart, marking (T0372)T221.CB as missing WARNING: atoms too close: (T0372)A238.CA and (T0372)A238.CB only 0.000 apart, marking (T0372)A238.CB as missing WARNING: atoms too close: (T0372)A247.CA and (T0372)A247.CB only 0.000 apart, marking (T0372)A247.CB as missing WARNING: atoms too close: (T0372)Q260.CA and (T0372)Q260.CB only 0.000 apart, marking (T0372)Q260.CB as missing WARNING: atoms too close: (T0372)I262.CA and (T0372)I262.CB only 0.000 apart, marking (T0372)I262.CB as missing WARNING: atoms too close: (T0372)N265.CA and (T0372)N265.CB only 0.000 apart, marking (T0372)N265.CB as missing WARNING: atoms too close: (T0372)L275.CA and (T0372)L275.CB only 0.000 apart, marking (T0372)L275.CB as missing WARNING: atoms too close: (T0372)T286.CA and (T0372)T286.CB only 0.000 apart, marking (T0372)T286.CB as missing WARNING: atoms too close: (T0372)L288.CA and (T0372)L288.CB only 0.000 apart, marking (T0372)L288.CB as missing WARNING: atoms too close: (T0372)C294.CA and (T0372)C294.CB only 0.000 apart, marking (T0372)C294.CB as missing WARNING: atoms too close: (T0372)M300.CA and (T0372)M300.CB only 0.000 apart, marking (T0372)M300.CB as missing # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 Skipped atom 55, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 376, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 461, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 289 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 229 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 Skipped atom 178, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 180, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 182, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 184, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 WARNING: atom 557 has residue number 1 < previous residue 267 in servers/mGen-3D_TS1.pdb.gz WARNING: atom 1094 has residue number 22 < previous residue 305 in servers/mGen-3D_TS1.pdb.gz # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 305 in servers/nFOLD_TS5.pdb.gz # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0372)C181.N and (T0372)D182.N only 0.000 apart, marking (T0372)D182.N as missing WARNING: atoms too close: (T0372)C181.CA and (T0372)D182.CA only 0.000 apart, marking (T0372)D182.CA as missing WARNING: atoms too close: (T0372)C181.O and (T0372)D182.O only 0.000 apart, marking (T0372)D182.O as missing WARNING: atoms too close: (T0372)C181.C and (T0372)D182.C only 0.000 apart, marking (T0372)D182.C as missing WARNING: atoms too close: (T0372)D182.N and (T0372)Q183.N only 0.000 apart, marking (T0372)D182.N as missing WARNING: atoms too close: (T0372)C181.N and (T0372)Q183.N only 0.000 apart, marking (T0372)Q183.N as missing WARNING: atoms too close: (T0372)D182.CA and (T0372)Q183.CA only 0.000 apart, marking (T0372)Q183.CA as missing WARNING: atoms too close: (T0372)C181.CA and (T0372)Q183.CA only 0.000 apart, marking (T0372)Q183.CA as missing WARNING: atoms too close: (T0372)D182.O and (T0372)Q183.O only 0.000 apart, marking (T0372)Q183.O as missing WARNING: atoms too close: (T0372)C181.O and (T0372)Q183.O only 0.000 apart, marking (T0372)Q183.O as missing WARNING: atoms too close: (T0372)D182.C and (T0372)Q183.C only 0.000 apart, marking (T0372)Q183.C as missing WARNING: atoms too close: (T0372)C181.C and (T0372)Q183.C only 0.000 apart, marking (T0372)Q183.C as missing # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/panther3_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0372)D117.N and (T0372)Y155.N only 0.000 apart, marking (T0372)Y155.N as missing WARNING: atoms too close: (T0372)D117.CA and (T0372)Y155.CA only 0.000 apart, marking (T0372)Y155.CA as missing WARNING: atoms too close: (T0372)D117.CB and (T0372)Y155.CB only 0.000 apart, marking (T0372)Y155.CB as missing WARNING: atoms too close: (T0372)D117.CG and (T0372)Y155.CG only 0.000 apart, marking (T0372)Y155.CG as missing WARNING: atoms too close: (T0372)D117.O and (T0372)Y155.O only 0.000 apart, marking (T0372)Y155.O as missing WARNING: atoms too close: (T0372)D117.C and (T0372)Y155.C only 0.000 apart, marking (T0372)Y155.C as missing WARNING: atoms too close: (T0372)Y155.N and (T0372)L171.N only 0.000 apart, marking (T0372)Y155.N as missing WARNING: atoms too close: (T0372)D117.N and (T0372)L171.N only 0.000 apart, marking (T0372)L171.N as missing WARNING: atoms too close: (T0372)Y155.CA and (T0372)L171.CA only 0.000 apart, marking (T0372)L171.CA as missing WARNING: atoms too close: (T0372)D117.CA and (T0372)L171.CA only 0.000 apart, marking (T0372)L171.CA as missing WARNING: atoms too close: (T0372)Y155.CB and (T0372)L171.CB only 0.000 apart, marking (T0372)L171.CB as missing WARNING: atoms too close: (T0372)D117.CB and (T0372)L171.CB only 0.000 apart, marking (T0372)L171.CB as missing WARNING: atoms too close: (T0372)Y155.CG and (T0372)L171.CG only 0.000 apart, marking (T0372)L171.CG as missing WARNING: atoms too close: (T0372)D117.CG and (T0372)L171.CG only 0.000 apart, marking (T0372)L171.CG as missing WARNING: atoms too close: (T0372)Y155.O and (T0372)L171.O only 0.000 apart, marking (T0372)L171.O as missing WARNING: atoms too close: (T0372)D117.O and (T0372)L171.O only 0.000 apart, marking (T0372)L171.O as missing WARNING: atoms too close: (T0372)Y155.C and (T0372)L171.C only 0.000 apart, marking (T0372)L171.C as missing WARNING: atoms too close: (T0372)D117.C and (T0372)L171.C only 0.000 apart, marking (T0372)L171.C as missing # WARNING: incomplete conformation T0372 can't currently be optimized by undertaker # naming current conformation panther3_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 248 model score 1.2255 model score 1.2116 model score 0.0504 model score 0.0723 model score 0.0154 model score 0.0466 model score 0.0319 model score 0.3203 model score 1.4403 model score -0.0440 model score 2.0457 model score 1.6361 model score 0.3055 model score 2.1266 model score 1.9299 model score 1.4081 model score 2.9084 model score 1.3034 model score 1.4081 model score 1.3034 model score 1.2456 model score 1.3803 model score 1.3948 model score -0.0279 model score 0.1512 model score 0.0051 model score 0.0870 model score -0.1033 model score 0.0498 model score -0.0876 model score 0.2611 model score 1.6015 model score 1.6443 model score 1.3081 model score 1.2968 model score 1.2667 model score 1.2585 model score 1.2712 model score 1.2715 model score 1.2629 model score -0.0876 model score 1.2106 model score 0.7545 model score -0.0071 model score -0.0143 model score 0.3239 model score 0.0870 model score 0.7545 model score 0.4289 model score -0.0876 model score 2.1407 model score 2.1203 model score 1.9941 model score 2.4515 model score 2.1266 model score 1.2508 model score 1.2921 model score 1.2508 model score 1.2798 model score 1.2521 model score 1.2508 model score 1.2921 model score 1.2798 model score 1.2818 model score 1.2892 model score 0.1679 model score 1.9927 model score 1.7816 model score 2.0514 model score 2.1846 model score 1.2530 model score 1.2771 model score 1.2916 model score 1.2861 model score 1.2826 model score 0.2143 model score 0.4289 model score 2.1816 model score 1.6930 model score 2.3935 model score 1.8627 model score 1.8578 model score 0.7195 model score 0.7195 model score 2.2014 model score 0.0337 model score 0.1648 model score 0.2260 model score 0.1194 model score 0.2078 model score -0.0111 model score 0.0259 model score 0.0133 model score 1.6968 model score 1.4563 model score 1.9354 model score 1.3487 model score 1.6190 model score 0.1458 model score 2.0591 model score 0.6312 model score 0.0709 model score 1.5532 model score 0.1179 model score 0.0123 model score 2.2125 model score 1.5449 model score 2.1175 model score -0.0231 model score 0.0123 model score 1.1211 model score 1.2591 model score 1.7998 model score -0.2613 model score -0.0442 model score -0.1484 model score -0.1991 model score -0.1656 model score 0.0513 model score 1.9549 model score 2.3655 model score 1.5599 model score 1.2975 model score 1.9775 model score 0.6347 model score 0.5623 model score 0.5843 model score 0.5230 model score 0.5485 model score 0.4250 model score 0.4013 model score 0.2382 model score 1.4003 model score 0.5567 model score 0.1465 model score 0.3053 model score 0.1055 model score 0.0287 model score 0.2032 model score 0.8222 model score 1.2243 model score 0.9790 model score 1.1767 model score 1.1282 model score 2.1385 model score 0.0287 model score 0.3053 model score 0.1055 model score 0.1465 model score 0.2115 model score 0.1578 model score 0.1362 model score -0.0239 model score 0.3237 model score 0.5152 model score 0.0637 model score 0.4187 model score -0.0926 model score 1.6284 model score 0.1576 model score 0.0541 model score 0.3890 model score -0.1139 model score 0.4226 model score 0.5725 model score 0.0229 model score 1.2774 model score -0.0043 model score 1.3141 model score 0.0148 model score 1.6382 model score 1.5952 model score 1.8978 model score 1.7349 model score 1.6884 model score 1.2595 model score 1.2732 model score 1.2733 model score 1.2771 model score 1.2771 model score 1.2669 model score 0.1811 model score -0.0871 model score -0.0403 model score 0.2430 model score 0.2003 model score -0.0239 model score 0.0015 model score 0.3412 model score 0.3368 model score 0.3113 model score 0.0240 model score -0.0665 model score 0.2306 model score 0.2896 model score 0.7792 model score 0.0513 model score -0.0143 model score 0.4976 model score 1.6909 model score 2.0504 model score 1.2771 model score 1.2734 model score 1.2679 model score 1.2577 model score 1.2594 model score 0.3135 model score 1.2771 model score 1.2654 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.0143 model score -0.0669 model score -0.0985 model score -0.1390 model score -0.0348 model score -0.1624 model score 0.2683 model score 1.2771 model score 1.2857 model score 1.2771 model score 1.2775 model score 1.2829 model score 0.4585 model score 0.8173 model score 1.9440 model score 1.9204 model score 1.9282 model score -0.1518 model score 0.0594 model score 0.3108 model score 0.5057 model score 0.1001 model score 2.0166 model score 0.4051 model score 0.0951 model score 0.3227 model score 0.3338 model score 0.0281 model score 2.2531 model score 1.2285 model score 1.8010 model score 2.4151 model score 1.8911 model score 1.3018 model score 1.2772 model score 0.1986 weight: 0.5778 eval: 1.2255 min: -0.2613 max: 2.9084 weight: 0.5818 eval: 1.2116 min: -0.2613 max: 2.9084 weight: 0.9115 eval: 0.0504 min: -0.2613 max: 2.9084 weight: 0.9053 eval: 0.0723 min: -0.2613 max: 2.9084 weight: 0.9214 eval: 0.0154 min: -0.2613 max: 2.9084 weight: 0.9126 eval: 0.0466 min: -0.2613 max: 2.9084 weight: 0.9168 eval: 0.0319 min: -0.2613 max: 2.9084 weight: 0.8349 eval: 0.3203 min: -0.2613 max: 2.9084 weight: 0.5168 eval: 1.4403 min: -0.2613 max: 2.9084 weight: 0.9383 eval: -0.0440 min: -0.2613 max: 2.9084 weight: 0.3450 eval: 2.0457 min: -0.2613 max: 2.9084 weight: 0.4613 eval: 1.6361 min: -0.2613 max: 2.9084 weight: 0.8391 eval: 0.3055 min: -0.2613 max: 2.9084 weight: 0.3220 eval: 2.1266 min: -0.2613 max: 2.9084 weight: 0.3778 eval: 1.9299 min: -0.2613 max: 2.9084 weight: 0.5260 eval: 1.4081 min: -0.2613 max: 2.9084 weight: 0.1000 eval: 2.9084 min: -0.2613 max: 2.9084 weight: 0.5557 eval: 1.3034 min: -0.2613 max: 2.9084 weight: 0.5260 eval: 1.4081 min: -0.2613 max: 2.9084 weight: 0.5557 eval: 1.3034 min: -0.2613 max: 2.9084 weight: 0.5721 eval: 1.2456 min: -0.2613 max: 2.9084 weight: 0.5339 eval: 1.3803 min: -0.2613 max: 2.9084 weight: 0.5298 eval: 1.3948 min: -0.2613 max: 2.9084 weight: 0.9337 eval: -0.0279 min: -0.2613 max: 2.9084 weight: 0.8829 eval: 0.1512 min: -0.2613 max: 2.9084 weight: 0.9243 eval: 0.0051 min: -0.2613 max: 2.9084 weight: 0.9011 eval: 0.0870 min: -0.2613 max: 2.9084 weight: 0.9551 eval: -0.1033 min: -0.2613 max: 2.9084 weight: 0.9117 eval: 0.0498 min: -0.2613 max: 2.9084 weight: 0.9507 eval: -0.0876 min: -0.2613 max: 2.9084 weight: 0.8517 eval: 0.2611 min: -0.2613 max: 2.9084 weight: 0.4711 eval: 1.6015 min: -0.2613 max: 2.9084 weight: 0.4589 eval: 1.6443 min: -0.2613 max: 2.9084 weight: 0.5544 eval: 1.3081 min: -0.2613 max: 2.9084 weight: 0.5576 eval: 1.2968 min: -0.2613 max: 2.9084 weight: 0.5661 eval: 1.2667 min: -0.2613 max: 2.9084 weight: 0.5685 eval: 1.2585 min: -0.2613 max: 2.9084 weight: 0.5649 eval: 1.2712 min: -0.2613 max: 2.9084 weight: 0.5648 eval: 1.2715 min: -0.2613 max: 2.9084 weight: 0.5672 eval: 1.2629 min: -0.2613 max: 2.9084 weight: 0.9507 eval: -0.0876 min: -0.2613 max: 2.9084 weight: 0.5821 eval: 1.2106 min: -0.2613 max: 2.9084 weight: 0.7116 eval: 0.7545 min: -0.2613 max: 2.9084 weight: 0.9278 eval: -0.0071 min: -0.2613 max: 2.9084 weight: 0.9299 eval: -0.0143 min: -0.2613 max: 2.9084 weight: 0.8338 eval: 0.3239 min: -0.2613 max: 2.9084 weight: 0.9011 eval: 0.0870 min: -0.2613 max: 2.9084 weight: 0.7116 eval: 0.7545 min: -0.2613 max: 2.9084 weight: 0.8040 eval: 0.4289 min: -0.2613 max: 2.9084 weight: 0.9507 eval: -0.0876 min: -0.2613 max: 2.9084 weight: 0.3180 eval: 2.1407 min: -0.2613 max: 2.9084 weight: 0.3238 eval: 2.1203 min: -0.2613 max: 2.9084 weight: 0.3596 eval: 1.9941 min: -0.2613 max: 2.9084 weight: 0.2297 eval: 2.4515 min: -0.2613 max: 2.9084 weight: 0.3220 eval: 2.1266 min: -0.2613 max: 2.9084 weight: 0.5707 eval: 1.2508 min: -0.2613 max: 2.9084 weight: 0.5589 eval: 1.2921 min: -0.2613 max: 2.9084 weight: 0.5707 eval: 1.2508 min: -0.2613 max: 2.9084 weight: 0.5624 eval: 1.2798 min: -0.2613 max: 2.9084 weight: 0.5703 eval: 1.2521 min: -0.2613 max: 2.9084 weight: 0.5707 eval: 1.2508 min: -0.2613 max: 2.9084 weight: 0.5589 eval: 1.2921 min: -0.2613 max: 2.9084 weight: 0.5624 eval: 1.2798 min: -0.2613 max: 2.9084 weight: 0.5619 eval: 1.2818 min: -0.2613 max: 2.9084 weight: 0.5597 eval: 1.2892 min: -0.2613 max: 2.9084 weight: 0.8781 eval: 0.1679 min: -0.2613 max: 2.9084 weight: 0.3600 eval: 1.9927 min: -0.2613 max: 2.9084 weight: 0.4199 eval: 1.7816 min: -0.2613 max: 2.9084 weight: 0.3433 eval: 2.0514 min: -0.2613 max: 2.9084 weight: 0.3055 eval: 2.1846 min: -0.2613 max: 2.9084 weight: 0.5700 eval: 1.2530 min: -0.2613 max: 2.9084 weight: 0.5632 eval: 1.2771 min: -0.2613 max: 2.9084 weight: 0.5591 eval: 1.2916 min: -0.2613 max: 2.9084 weight: 0.5606 eval: 1.2861 min: -0.2613 max: 2.9084 weight: 0.5616 eval: 1.2826 min: -0.2613 max: 2.9084 weight: 0.8650 eval: 0.2143 min: -0.2613 max: 2.9084 weight: 0.8040 eval: 0.4289 min: -0.2613 max: 2.9084 weight: 0.3064 eval: 2.1816 min: -0.2613 max: 2.9084 weight: 0.4451 eval: 1.6930 min: -0.2613 max: 2.9084 weight: 0.2462 eval: 2.3935 min: -0.2613 max: 2.9084 weight: 0.3969 eval: 1.8627 min: -0.2613 max: 2.9084 weight: 0.3983 eval: 1.8578 min: -0.2613 max: 2.9084 weight: 0.7215 eval: 0.7195 min: -0.2613 max: 2.9084 weight: 0.7215 eval: 0.7195 min: -0.2613 max: 2.9084 weight: 0.3007 eval: 2.2014 min: -0.2613 max: 2.9084 weight: 0.9162 eval: 0.0337 min: -0.2613 max: 2.9084 weight: 0.8790 eval: 0.1648 min: -0.2613 max: 2.9084 weight: 0.8616 eval: 0.2260 min: -0.2613 max: 2.9084 weight: 0.8919 eval: 0.1194 min: -0.2613 max: 2.9084 weight: 0.8668 eval: 0.2078 min: -0.2613 max: 2.9084 weight: 0.9290 eval: -0.0111 min: -0.2613 max: 2.9084 weight: 0.9184 eval: 0.0259 min: -0.2613 max: 2.9084 weight: 0.9220 eval: 0.0133 min: -0.2613 max: 2.9084 weight: 0.4440 eval: 1.6968 min: -0.2613 max: 2.9084 weight: 0.5123 eval: 1.4563 min: -0.2613 max: 2.9084 weight: 0.3763 eval: 1.9354 min: -0.2613 max: 2.9084 weight: 0.5429 eval: 1.3487 min: -0.2613 max: 2.9084 weight: 0.4661 eval: 1.6190 min: -0.2613 max: 2.9084 weight: 0.8844 eval: 0.1458 min: -0.2613 max: 2.9084 weight: 0.3411 eval: 2.0591 min: -0.2613 max: 2.9084 weight: 0.7466 eval: 0.6312 min: -0.2613 max: 2.9084 weight: 0.9057 eval: 0.0709 min: -0.2613 max: 2.9084 weight: 0.4848 eval: 1.5532 min: -0.2613 max: 2.9084 weight: 0.8923 eval: 0.1179 min: -0.2613 max: 2.9084 weight: 0.9223 eval: 0.0123 min: -0.2613 max: 2.9084 weight: 0.2976 eval: 2.2125 min: -0.2613 max: 2.9084 weight: 0.4871 eval: 1.5449 min: -0.2613 max: 2.9084 weight: 0.3246 eval: 2.1175 min: -0.2613 max: 2.9084 weight: 0.9324 eval: -0.0231 min: -0.2613 max: 2.9084 weight: 0.9223 eval: 0.0123 min: -0.2613 max: 2.9084 weight: 0.6075 eval: 1.1211 min: -0.2613 max: 2.9084 weight: 0.5683 eval: 1.2591 min: -0.2613 max: 2.9084 weight: 0.4148 eval: 1.7998 min: -0.2613 max: 2.9084 weight: 1.0000 eval: -0.2613 min: -0.2613 max: 2.9084 weight: 0.9384 eval: -0.0442 min: -0.2613 max: 2.9084 weight: 0.9679 eval: -0.1484 min: -0.2613 max: 2.9084 weight: 0.9823 eval: -0.1991 min: -0.2613 max: 2.9084 weight: 0.9728 eval: -0.1656 min: -0.2613 max: 2.9084 weight: 0.9112 eval: 0.0513 min: -0.2613 max: 2.9084 weight: 0.3707 eval: 1.9549 min: -0.2613 max: 2.9084 weight: 0.2542 eval: 2.3655 min: -0.2613 max: 2.9084 weight: 0.4829 eval: 1.5599 min: -0.2613 max: 2.9084 weight: 0.5574 eval: 1.2975 min: -0.2613 max: 2.9084 weight: 0.3643 eval: 1.9775 min: -0.2613 max: 2.9084 weight: 0.7456 eval: 0.6347 min: -0.2613 max: 2.9084 weight: 0.7662 eval: 0.5623 min: -0.2613 max: 2.9084 weight: 0.7599 eval: 0.5843 min: -0.2613 max: 2.9084 weight: 0.7773 eval: 0.5230 min: -0.2613 max: 2.9084 weight: 0.7701 eval: 0.5485 min: -0.2613 max: 2.9084 weight: 0.8051 eval: 0.4250 min: -0.2613 max: 2.9084 weight: 0.8119 eval: 0.4013 min: -0.2613 max: 2.9084 weight: 0.8582 eval: 0.2382 min: -0.2613 max: 2.9084 weight: 0.5282 eval: 1.4003 min: -0.2613 max: 2.9084 weight: 0.7677 eval: 0.5567 min: -0.2613 max: 2.9084 weight: 0.8842 eval: 0.1465 min: -0.2613 max: 2.9084 weight: 0.8391 eval: 0.3053 min: -0.2613 max: 2.9084 weight: 0.8958 eval: 0.1055 min: -0.2613 max: 2.9084 weight: 0.9177 eval: 0.0287 min: -0.2613 max: 2.9084 weight: 0.8681 eval: 0.2032 min: -0.2613 max: 2.9084 weight: 0.6924 eval: 0.8222 min: -0.2613 max: 2.9084 weight: 0.5782 eval: 1.2243 min: -0.2613 max: 2.9084 weight: 0.6478 eval: 0.9790 min: -0.2613 max: 2.9084 weight: 0.5917 eval: 1.1767 min: -0.2613 max: 2.9084 weight: 0.6055 eval: 1.1282 min: -0.2613 max: 2.9084 weight: 0.3186 eval: 2.1385 min: -0.2613 max: 2.9084 weight: 0.9177 eval: 0.0287 min: -0.2613 max: 2.9084 weight: 0.8391 eval: 0.3053 min: -0.2613 max: 2.9084 weight: 0.8958 eval: 0.1055 min: -0.2613 max: 2.9084 weight: 0.8842 eval: 0.1465 min: -0.2613 max: 2.9084 weight: 0.8658 eval: 0.2115 min: -0.2613 max: 2.9084 weight: 0.8810 eval: 0.1578 min: -0.2613 max: 2.9084 weight: 0.8871 eval: 0.1362 min: -0.2613 max: 2.9084 weight: 0.9326 eval: -0.0239 min: -0.2613 max: 2.9084 weight: 0.8339 eval: 0.3237 min: -0.2613 max: 2.9084 weight: 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-0.2613 max: 2.9084 weight: 0.9447 eval: -0.0665 min: -0.2613 max: 2.9084 weight: 0.8603 eval: 0.2306 min: -0.2613 max: 2.9084 weight: 0.8436 eval: 0.2896 min: -0.2613 max: 2.9084 weight: 0.7046 eval: 0.7792 min: -0.2613 max: 2.9084 weight: 0.9112 eval: 0.0513 min: -0.2613 max: 2.9084 weight: 0.9299 eval: -0.0143 min: -0.2613 max: 2.9084 weight: 0.7845 eval: 0.4976 min: -0.2613 max: 2.9084 weight: 0.4457 eval: 1.6909 min: -0.2613 max: 2.9084 weight: 0.3436 eval: 2.0504 min: -0.2613 max: 2.9084 weight: 0.5632 eval: 1.2771 min: -0.2613 max: 2.9084 weight: 0.5642 eval: 1.2734 min: -0.2613 max: 2.9084 weight: 0.5658 eval: 1.2679 min: -0.2613 max: 2.9084 weight: 0.5687 eval: 1.2577 min: -0.2613 max: 2.9084 weight: 0.5682 eval: 1.2594 min: -0.2613 max: 2.9084 weight: 0.8368 eval: 0.3135 min: -0.2613 max: 2.9084 weight: 0.5632 eval: 1.2771 min: -0.2613 max: 2.9084 weight: 0.5665 eval: 1.2654 min: -0.2613 max: 2.9084 weight: 0.5632 eval: 1.2771 min: -0.2613 max: 2.9084 weight: 0.5632 eval: 1.2771 min: -0.2613 max: 2.9084 weight: 0.5632 eval: 1.2771 min: -0.2613 max: 2.9084 weight: 0.9217 eval: 0.0143 min: -0.2613 max: 2.9084 weight: 0.9448 eval: -0.0669 min: -0.2613 max: 2.9084 weight: 0.9538 eval: -0.0985 min: -0.2613 max: 2.9084 weight: 0.9653 eval: -0.1390 min: -0.2613 max: 2.9084 weight: 0.9357 eval: -0.0348 min: -0.2613 max: 2.9084 weight: 0.9719 eval: -0.1624 min: -0.2613 max: 2.9084 weight: 0.8496 eval: 0.2683 min: -0.2613 max: 2.9084 weight: 0.5632 eval: 1.2771 min: -0.2613 max: 2.9084 weight: 0.5607 eval: 1.2857 min: -0.2613 max: 2.9084 weight: 0.5632 eval: 1.2771 min: -0.2613 max: 2.9084 weight: 0.5631 eval: 1.2775 min: -0.2613 max: 2.9084 weight: 0.5616 eval: 1.2829 min: -0.2613 max: 2.9084 weight: 0.7956 eval: 0.4585 min: -0.2613 max: 2.9084 weight: 0.6937 eval: 0.8173 min: -0.2613 max: 2.9084 weight: 0.3738 eval: 1.9440 min: -0.2613 max: 2.9084 weight: 0.3805 eval: 1.9204 min: -0.2613 max: 2.9084 weight: 0.3783 eval: 1.9282 min: -0.2613 max: 2.9084 weight: 0.9689 eval: -0.1518 min: -0.2613 max: 2.9084 weight: 0.9089 eval: 0.0594 min: -0.2613 max: 2.9084 weight: 0.8375 eval: 0.3108 min: -0.2613 max: 2.9084 weight: 0.7822 eval: 0.5057 min: -0.2613 max: 2.9084 weight: 0.8974 eval: 0.1001 min: -0.2613 max: 2.9084 weight: 0.3532 eval: 2.0166 min: -0.2613 max: 2.9084 weight: 0.8108 eval: 0.4051 min: -0.2613 max: 2.9084 weight: 0.8988 eval: 0.0951 min: -0.2613 max: 2.9084 weight: 0.8342 eval: 0.3227 min: -0.2613 max: 2.9084 weight: 0.8310 eval: 0.3338 min: -0.2613 max: 2.9084 weight: 0.9178 eval: 0.0281 min: -0.2613 max: 2.9084 weight: 0.2861 eval: 2.2531 min: -0.2613 max: 2.9084 weight: 0.5770 eval: 1.2285 min: -0.2613 max: 2.9084 weight: 0.4144 eval: 1.8010 min: -0.2613 max: 2.9084 weight: 0.2401 eval: 2.4151 min: -0.2613 max: 2.9084 weight: 0.3888 eval: 1.8911 min: -0.2613 max: 2.9084 weight: 0.5562 eval: 1.3018 min: -0.2613 max: 2.9084 weight: 0.5632 eval: 1.2772 min: -0.2613 max: 2.9084 weight: 0.8694 eval: 0.1986 min: -0.2613 max: 2.9084 Adding 23101 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -563.1353, CN propb: -563.1353 weights: 0.1981 constraints: 1231 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 1231 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 1231 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 21870 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 21870 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 23101 # command: