# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0370/ # command:# Making conformation for sequence T0370 numbered 1 through 154 Created new target T0370 from T0370.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0370/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0370//projects/compbio/experiments/protein-predict/casp7/T0370/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0370//projects/compbio/experiments/protein-predict/casp7/T0370/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0370/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0370/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0370)V72.CB, (T0370)I125.CB) [> 3.3922 = 5.6536 < 7.3497] w=1.0000 to align # Constraint # added constraint: constraint((T0370)A55.CB, (T0370)Y122.CB) [> 3.2472 = 5.4121 < 7.0357] w=1.0000 to align # Constraint # added constraint: constraint((T0370)V54.CB, (T0370)F123.CB) [> 3.0073 = 5.0122 < 6.5158] w=1.0000 to align # Constraint # added constraint: constraint((T0370)L53.CB, (T0370)R124.CB) [> 3.1969 = 5.3282 < 6.9267] w=1.0000 to align # Constraint # added constraint: constraint((T0370)L53.CB, (T0370)F123.CB) [> 4.1127 = 6.8544 < 8.9108] w=1.0000 to align # Constraint # added constraint: constraint((T0370)L53.CB, (T0370)Y122.CB) [> 3.6267 = 6.0445 < 7.8579] w=1.0000 to align # Constraint # added constraint: constraint((T0370)A26.CB, (T0370)P42.CB) [> 4.0164 = 6.6940 < 8.7022] w=0.9833 to align # Constraint # added constraint: constraint((T0370)W27.CB, (T0370)P42.CB) [> 3.7255 = 6.2091 < 8.0719] w=0.9833 to align # Constraint # added constraint: constraint((T0370)W27.CB, (T0370)L74.CB) [> 3.7617 = 6.2695 < 8.1504] w=0.9833 to align # Constraint # added constraint: constraint((T0370)W27.CB, (T0370)G75.CA) [> 3.0466 = 5.0778 < 6.6011] w=0.9833 to align # Constraint # added constraint: constraint((T0370)V28.CB, (T0370)L40.CB) [> 3.9306 = 6.5510 < 8.5163] w=0.9833 to align # Constraint # added constraint: constraint((T0370)V28.CB, (T0370)V41.CB) [> 3.6789 = 6.1315 < 7.9710] w=0.9833 to align # Constraint # added constraint: constraint((T0370)V28.CB, (T0370)L74.CB) [> 3.5108 = 5.8514 < 7.6068] w=0.9833 to align # Constraint # added constraint: constraint((T0370)S29.CB, (T0370)L40.CB) [> 3.3604 = 5.6007 < 7.2809] w=0.9833 to align # Constraint # added constraint: constraint((T0370)S29.CB, (T0370)V72.CB) [> 3.8805 = 6.4674 < 8.4077] w=0.9833 to align # Constraint # added constraint: constraint((T0370)S29.CB, (T0370)R73.CB) [> 3.1966 = 5.3277 < 6.9260] w=0.9833 to align # Constraint # added constraint: constraint((T0370)T30.CB, (T0370)Y39.CB) [> 3.3593 = 5.5988 < 7.2784] w=0.9833 to align # Constraint # added constraint: constraint((T0370)T30.CB, (T0370)V72.CB) [> 3.5287 = 5.8812 < 7.6455] w=0.9833 to align # Constraint # added constraint: constraint((T0370)F52.CB, (T0370)L74.CB) [> 3.8257 = 6.3762 < 8.2891] w=0.9833 to align # Constraint # added constraint: constraint((T0370)F52.CB, (T0370)R124.CB) [> 4.3855 = 7.3091 < 9.5018] w=0.9833 to align # Constraint # added constraint: constraint((T0370)F52.CB, (T0370)I125.CB) [> 2.9493 = 4.9154 < 6.3901] w=0.9833 to align # Constraint # added constraint: constraint((T0370)R71.CB, (T0370)G87.CA) [> 3.7849 = 6.3082 < 8.2006] w=0.9681 to align # Constraint # added constraint: constraint((T0370)R71.CB, (T0370)T88.CB) [> 3.5124 = 5.8541 < 7.6103] w=0.9681 to align # Constraint # added constraint: constraint((T0370)V72.CB, (T0370)G87.CA) [> 3.5336 = 5.8894 < 7.6562] w=0.9681 to align # Constraint # added constraint: constraint((T0370)R73.CB, (T0370)L84.CB) [> 3.8266 = 6.3776 < 8.2909] w=0.9681 to align # Constraint # added constraint: constraint((T0370)R73.CB, (T0370)V85.CB) [> 4.1312 = 6.8853 < 8.9509] w=0.9681 to align # Constraint # added constraint: constraint((T0370)R73.CB, (T0370)E86.CB) [> 3.1932 = 5.3221 < 6.9187] w=0.9681 to align # Constraint # added constraint: constraint((T0370)R73.CB, (T0370)G87.CA) [> 4.4219 = 7.3699 < 9.5808] w=0.9681 to align # Constraint # added constraint: constraint((T0370)L74.CB, (T0370)L84.CB) [> 4.3201 = 7.2002 < 9.3603] w=0.9681 to align # Constraint # added constraint: constraint((T0370)L74.CB, (T0370)V85.CB) [> 2.7301 = 4.5502 < 5.9153] w=0.9681 to align # Constraint # added constraint: constraint((T0370)G75.CA, (T0370)L84.CB) [> 3.0261 = 5.0436 < 6.5566] w=0.9681 to align # Constraint # added constraint: constraint((T0370)G75.CA, (T0370)V85.CB) [> 3.9094 = 6.5156 < 8.4703] w=0.9681 to align # Constraint # added constraint: constraint((T0370)E86.CB, (T0370)R128.CB) [> 3.3052 = 5.5087 < 7.1613] w=0.9681 to align # Constraint # added constraint: constraint((T0370)G87.CA, (T0370)I125.CB) [> 3.3449 = 5.5747 < 7.2472] w=0.9681 to align # Constraint # added constraint: constraint((T0370)G87.CA, (T0370)R128.CB) [> 2.6762 = 4.4603 < 5.7984] w=0.9681 to align # Constraint # added constraint: constraint((T0370)T88.CB, (T0370)R128.CB) [> 4.1604 = 6.9340 < 9.0142] w=0.9681 to align # Constraint # added constraint: constraint((T0370)P91.CB, (T0370)Y122.CB) [> 4.3102 = 7.1837 < 9.3389] w=0.9681 to align # Constraint # added constraint: constraint((T0370)P91.CB, (T0370)F123.CB) [> 3.5048 = 5.8413 < 7.5937] w=0.9681 to align # Constraint # added constraint: constraint((T0370)T51.CB, (T0370)R124.CB) [> 3.2828 = 5.4713 < 7.1127] w=0.9666 to align # Constraint # added constraint: constraint((T0370)E86.CB, (T0370)R129.CB) [> 2.5580 = 4.2634 < 5.5424] w=0.9631 to align # Constraint # added constraint: constraint((T0370)V85.CB, (T0370)V130.CB) [> 3.3031 = 5.5051 < 7.1567] w=0.9631 to align # Constraint # added constraint: constraint((T0370)L84.CB, (T0370)V130.CB) [> 4.1917 = 6.9862 < 9.0821] w=0.9631 to align # Constraint # added constraint: constraint((T0370)V83.CB, (T0370)V130.CB) [> 3.9756 = 6.6260 < 8.6138] w=0.9631 to align # Constraint # added constraint: constraint((T0370)T56.CB, (T0370)L121.CB) [> 3.5465 = 5.9109 < 7.6841] w=0.9545 to align # Constraint # added constraint: constraint((T0370)V54.CB, (T0370)I125.CB) [> 4.4317 = 7.3862 < 9.6020] w=0.9521 to align # Constraint # added constraint: constraint((T0370)L74.CB, (T0370)I125.CB) [> 3.8779 = 6.4632 < 8.4022] w=0.9521 to align # Constraint # added constraint: constraint((T0370)P91.CB, (T0370)L121.CB) [> 3.4218 = 5.7030 < 7.4139] w=0.9521 to align # Constraint # added constraint: constraint((T0370)A55.CB, (T0370)L121.CB) [> 4.1504 = 6.9173 < 8.9925] w=0.9499 to align # Constraint # added constraint: constraint((T0370)V28.CB, (T0370)P42.CB) [> 4.1643 = 6.9405 < 9.0227] w=0.9499 to align # Constraint # added constraint: constraint((T0370)L84.CB, (T0370)Q131.CB) [> 2.7694 = 4.6156 < 6.0003] w=0.9497 to align # Constraint # added constraint: constraint((T0370)V83.CB, (T0370)Q131.CB) [> 4.2773 = 7.1289 < 9.2676] w=0.9497 to align # Constraint # added constraint: constraint((T0370)V85.CB, (T0370)I125.CB) [> 4.1413 = 6.9021 < 8.9727] w=0.9471 to align # Constraint # added constraint: constraint((T0370)T56.CB, (T0370)F123.CB) [> 3.8221 = 6.3701 < 8.2811] w=0.9348 to align # Constraint # added constraint: constraint((T0370)G70.CA, (T0370)T88.CB) [> 3.3119 = 5.5199 < 7.1759] w=0.9347 to align # Constraint # added constraint: constraint((T0370)A31.CB, (T0370)N65.CB) [> 3.3084 = 5.5140 < 7.1682] w=0.9332 to align # Constraint # added constraint: constraint((T0370)T51.CB, (T0370)I125.CB) [> 3.6834 = 6.1390 < 7.9808] w=0.9332 to align # Constraint # added constraint: constraint((T0370)P57.CB, (T0370)Y120.CB) [> 3.7545 = 6.2576 < 8.1348] w=0.9332 to align # Constraint # added constraint: constraint((T0370)V72.CB, (T0370)A89.CB) [> 2.9182 = 4.8637 < 6.3228] w=0.9180 to align # Constraint # added constraint: constraint((T0370)T88.CB, (T0370)I125.CB) [> 4.2128 = 7.0214 < 9.1278] w=0.9180 to align # Constraint # added constraint: constraint((T0370)A89.CB, (T0370)F123.CB) [> 3.0069 = 5.0114 < 6.5149] w=0.9180 to align # Constraint # added constraint: constraint((T0370)A89.CB, (T0370)R124.CB) [> 4.1766 = 6.9610 < 9.0492] w=0.9180 to align # Constraint # added constraint: constraint((T0370)A89.CB, (T0370)I125.CB) [> 2.9403 = 4.9005 < 6.3707] w=0.9180 to align # Constraint # added constraint: constraint((T0370)L90.CB, (T0370)R124.CB) [> 3.1193 = 5.1989 < 6.7585] w=0.9180 to align # Constraint # added constraint: constraint((T0370)V85.CB, (T0370)P127.CB) [> 3.1416 = 5.2359 < 6.8067] w=0.9180 to align # Constraint # added constraint: constraint((T0370)G87.CA, (T0370)S126.CB) [> 3.5890 = 5.9816 < 7.7761] w=0.9180 to align # Constraint # added constraint: constraint((T0370)G87.CA, (T0370)P127.CB) [> 3.5102 = 5.8504 < 7.6055] w=0.9180 to align # Constraint # added constraint: constraint((T0370)V83.CB, (T0370)A132.CB) [> 3.1241 = 5.2068 < 6.7688] w=0.9171 to align # Constraint # added constraint: constraint((T0370)G87.CA, (T0370)R129.CB) [> 4.1992 = 6.9987 < 9.0983] w=0.9130 to align # Constraint # added constraint: constraint((T0370)L92.CB, (T0370)Y122.CB) [> 2.5832 = 4.3053 < 5.5969] w=0.9028 to align # Constraint # added constraint: constraint((T0370)V72.CB, (T0370)E86.CB) [> 4.5595 = 7.5991 < 9.8789] w=0.9021 to align # Constraint # added constraint: constraint((T0370)V54.CB, (T0370)Y122.CB) [> 4.3019 = 7.1698 < 9.3207] w=0.9021 to align # Constraint # added constraint: constraint((T0370)V72.CB, (T0370)T88.CB) [> 4.2874 = 7.1456 < 9.2893] w=0.9021 to align # Constraint # added constraint: constraint((T0370)L53.CB, (T0370)I125.CB) [> 4.5597 = 7.5995 < 9.8794] w=0.8998 to align # Constraint # added constraint: constraint((T0370)A55.CB, (T0370)F123.CB) [> 4.4243 = 7.3739 < 9.5860] w=0.8998 to align # Constraint # added constraint: constraint((T0370)F52.CB, (T0370)V85.CB) [> 3.8645 = 6.4408 < 8.3731] w=0.8963 to align # Constraint # added constraint: constraint((T0370)P57.CB, (T0370)L121.CB) [> 4.3097 = 7.1829 < 9.3378] w=0.8948 to align # Constraint # added constraint: constraint((T0370)V28.CB, (T0370)G75.CA) [> 4.0562 = 6.7604 < 8.7885] w=0.8862 to align # Constraint # added constraint: constraint((T0370)S29.CB, (T0370)L74.CB) [> 3.9872 = 6.6453 < 8.6389] w=0.8846 to align # Constraint # added constraint: constraint((T0370)G70.CA, (T0370)A89.CB) [> 3.0258 = 5.0430 < 6.5559] w=0.8846 to align # Constraint # added constraint: constraint((T0370)T51.CB, (T0370)S126.CB) [> 3.1901 = 5.3168 < 6.9119] w=0.8831 to align # Constraint # added constraint: constraint((T0370)Y39.CB, (T0370)T62.CB) [> 4.0451 = 6.7418 < 8.7644] w=0.8831 to align # Constraint # added constraint: constraint((T0370)L43.CB, (T0370)V54.CB) [> 2.9424 = 4.9039 < 6.3751] w=0.8831 to align # Constraint # added constraint: constraint((T0370)A26.CB, (T0370)L43.CB) [> 3.7150 = 6.1916 < 8.0491] w=0.8831 to align # Constraint # added constraint: constraint((T0370)A55.CB, (T0370)Y120.CB) [> 3.6064 = 6.0106 < 7.8138] w=0.8781 to align # Constraint # added constraint: constraint((T0370)L90.CB, (T0370)F123.CB) [> 4.1156 = 6.8594 < 8.9172] w=0.8679 to align # Constraint # added constraint: constraint((T0370)T88.CB, (T0370)S126.CB) [> 3.3820 = 5.6366 < 7.3276] w=0.8679 to align # Constraint # added constraint: constraint((T0370)A26.CB, (T0370)I76.CB) [> 3.3983 = 5.6639 < 7.3631] w=0.8670 to align # Constraint # added constraint: constraint((T0370)V85.CB, (T0370)R129.CB) [> 4.4272 = 7.3786 < 9.5922] w=0.8629 to align # Constraint # added constraint: constraint((T0370)E86.CB, (T0370)V130.CB) [> 4.4240 = 7.3733 < 9.5853] w=0.8629 to align # Constraint # added constraint: constraint((T0370)L92.CB, (T0370)F123.CB) [> 4.2280 = 7.0467 < 9.1607] w=0.8528 to align # Constraint # added constraint: constraint((T0370)V41.CB, (T0370)T62.CB) [> 3.5193 = 5.8655 < 7.6251] w=0.8330 to align # Constraint # added constraint: constraint((T0370)A58.CB, (T0370)L121.CB) [> 3.0966 = 5.1610 < 6.7094] w=0.8296 to align # Constraint # added constraint: constraint((T0370)E86.CB, (T0370)P127.CB) [> 4.3076 = 7.1794 < 9.3332] w=0.8178 to align # Constraint # added constraint: constraint((T0370)V28.CB, (T0370)L43.CB) [> 3.5031 = 5.8385 < 7.5901] w=0.8163 to align # Constraint # added constraint: constraint((T0370)L43.CB, (T0370)T56.CB) [> 4.0480 = 6.7467 < 8.7707] w=0.8129 to align # Constraint # added constraint: constraint((T0370)L92.CB, (T0370)R124.CB) [> 3.5718 = 5.9530 < 7.7390] w=0.8027 to align # Constraint # added constraint: constraint((T0370)A26.CB, (T0370)Y45.CB) [> 3.4396 = 5.7326 < 7.4524] w=0.8002 to align # Constraint # added constraint: constraint((T0370)A58.CB, (T0370)Y120.CB) [> 4.3492 = 7.2487 < 9.4233] w=0.7996 to align # Constraint # added constraint: constraint((T0370)F52.CB, (T0370)P127.CB) [> 4.0921 = 6.8202 < 8.8663] w=0.7996 to align # Constraint # added constraint: constraint((T0370)A31.CB, (T0370)R71.CB) [> 4.2093 = 7.0155 < 9.1202] w=0.7996 to align # Constraint # added constraint: constraint((T0370)Y45.CB, (T0370)V54.CB) [> 3.3720 = 5.6199 < 7.3059] w=0.7969 to align # Constraint # added constraint: constraint((T0370)D25.CB, (T0370)S44.CB) [> 3.5103 = 5.8506 < 7.6057] w=0.7867 to align # Constraint # added constraint: constraint((T0370)Y39.CB, (T0370)N65.CB) [> 3.6541 = 6.0901 < 7.9172] w=0.7829 to align # Constraint # added constraint: constraint((T0370)Y39.CB, (T0370)P61.CB) [> 3.7681 = 6.2802 < 8.1643] w=0.7829 to align # Constraint # added constraint: constraint((T0370)S44.CB, (T0370)V54.CB) [> 4.0760 = 6.7932 < 8.8312] w=0.7802 to align # Constraint # added constraint: constraint((T0370)A58.CB, (T0370)S119.CB) [> 3.0738 = 5.1230 < 6.6599] w=0.7802 to align # Constraint # added constraint: constraint((T0370)R71.CB, (T0370)E86.CB) [> 4.5329 = 7.5548 < 9.8213] w=0.7673 to align # Constraint # added constraint: constraint((T0370)T51.CB, (T0370)P127.CB) [> 3.7225 = 6.2041 < 8.0653] w=0.7662 to align # Constraint # added constraint: constraint((T0370)P57.CB, (T0370)S119.CB) [> 3.5446 = 5.9077 < 7.6800] w=0.7646 to align # Constraint # added constraint: constraint((T0370)W27.CB, (T0370)I76.CB) [> 3.9267 = 6.5444 < 8.5077] w=0.7541 to align # Constraint # added constraint: constraint((T0370)L92.CB, (T0370)L121.CB) [> 3.9349 = 6.5582 < 8.5257] w=0.7526 to align # Constraint # added constraint: constraint((T0370)W27.CB, (T0370)L43.CB) [> 4.1952 = 6.9920 < 9.0896] w=0.7495 to align # Constraint # added constraint: constraint((T0370)T56.CB, (T0370)Y120.CB) [> 4.1922 = 6.9869 < 9.0830] w=0.7495 to align # Constraint # added constraint: constraint((T0370)L90.CB, (T0370)S126.CB) [> 4.1393 = 6.8988 < 8.9685] w=0.7176 to align # Constraint # added constraint: constraint((T0370)L66.CB, (T0370)F123.CB) [> 3.8031 = 6.3386 < 8.2401] w=0.6995 to align # Constraint # added constraint: constraint((T0370)V28.CB, (T0370)R73.CB) [> 4.4036 = 7.3393 < 9.5410] w=0.6850 to align # Constraint # added constraint: constraint((T0370)D25.CB, (T0370)Y45.CB) [> 3.7932 = 6.3220 < 8.2186] w=0.6849 to align # Constraint # added constraint: constraint((T0370)S29.CB, (T0370)Y39.CB) [> 4.0083 = 6.6806 < 8.6847] w=0.6834 to align # Constraint # added constraint: constraint((T0370)S29.CB, (T0370)G75.CA) [> 4.6087 = 7.6812 < 9.9856] w=0.6825 to align # Constraint # added constraint: constraint((T0370)V83.CB, (T0370)W133.CB) [> 4.4763 = 7.4604 < 9.6986] w=0.6800 to align # Constraint # added constraint: constraint((T0370)R71.CB, (T0370)A89.CB) [> 4.3818 = 7.3029 < 9.4938] w=0.6675 to align # Constraint # added constraint: constraint((T0370)A26.CB, (T0370)L74.CB) [> 2.9543 = 4.9238 < 6.4009] w=0.6667 to align # Constraint # added constraint: constraint((T0370)A26.CB, (T0370)G75.CA) [> 3.1654 = 5.2757 < 6.8583] w=0.6667 to align # Constraint # added constraint: constraint((T0370)W27.CB, (T0370)L40.CB) [> 3.3429 = 5.5716 < 7.2430] w=0.6667 to align # Constraint # added constraint: constraint((T0370)W27.CB, (T0370)V41.CB) [> 4.2919 = 7.1532 < 9.2991] w=0.6667 to align # Constraint # added constraint: constraint((T0370)V28.CB, (T0370)V72.CB) [> 3.6471 = 6.0784 < 7.9020] w=0.6667 to align # Constraint # added constraint: constraint((T0370)S29.CB, (T0370)P38.CB) [> 3.2960 = 5.4933 < 7.1413] w=0.6667 to align # Constraint # added constraint: constraint((T0370)I76.CB, (T0370)V85.CB) [> 4.6018 = 7.6696 < 9.9705] w=0.6516 to align # Constraint # added constraint: constraint((T0370)L82.CB, (T0370)A132.CB) [> 4.1430 = 6.9050 < 8.9766] w=0.6379 to align # Constraint # added constraint: constraint((T0370)V28.CB, (T0370)V54.CB) [> 4.0881 = 6.8135 < 8.8575] w=0.6333 to align # Constraint # added constraint: constraint((T0370)L20.CB, (T0370)I76.CB) [> 3.7695 = 6.2825 < 8.1672] w=0.6197 to align # Constraint # added constraint: constraint((T0370)T16.CB, (T0370)A132.CB) [> 3.5499 = 5.9165 < 7.6915] w=0.6147 to align # Constraint # added constraint: constraint((T0370)L82.CB, (T0370)W133.CB) [> 2.8163 = 4.6938 < 6.1020] w=0.6132 to align # Constraint # added constraint: constraint((T0370)V101.CB, (T0370)Y122.CB) [> 3.0535 = 5.0891 < 6.6158] w=0.6045 to align # Constraint # added constraint: constraint((T0370)T30.CB, (T0370)G63.CA) [> 4.3940 = 7.3234 < 9.5204] w=0.5999 to align # Constraint # added constraint: constraint((T0370)E50.CB, (T0370)S126.CB) [> 3.8405 = 6.4009 < 8.3212] w=0.5993 to align # Constraint # added constraint: constraint((T0370)T30.CB, (T0370)L40.CB) [> 3.7449 = 6.2415 < 8.1140] w=0.5826 to align # Constraint # added constraint: constraint((T0370)A26.CB, (T0370)S44.CB) [> 3.9573 = 6.5955 < 8.5741] w=0.5681 to align # Constraint # added constraint: constraint((T0370)L90.CB, (T0370)I125.CB) [> 4.4942 = 7.4903 < 9.7374] w=0.5624 to align # Constraint # added constraint: constraint((T0370)V24.CB, (T0370)I76.CB) [> 3.3970 = 5.6616 < 7.3601] w=0.5521 to align # Constraint # added constraint: constraint((T0370)A89.CB, (T0370)S126.CB) [> 4.6105 = 7.6842 < 9.9894] w=0.5514 to align # Constraint # added constraint: constraint((T0370)T30.CB, (T0370)G70.CA) [> 4.5571 = 7.5951 < 9.8736] w=0.5510 to align # Constraint # added constraint: constraint((T0370)T16.CB, (T0370)V83.CB) [> 3.2311 = 5.3852 < 7.0007] w=0.5346 to align # Constraint # added constraint: constraint((T0370)S44.CB, (T0370)A55.CB) [> 4.2864 = 7.1441 < 9.2873] w=0.5343 to align # Constraint # added constraint: constraint((T0370)L20.CB, (T0370)V83.CB) [> 3.5756 = 5.9593 < 7.7470] w=0.5193 to align # Constraint # added constraint: constraint((T0370)Y45.CB, (T0370)L74.CB) [> 4.2415 = 7.0692 < 9.1900] w=0.5130 to align # Constraint # added constraint: constraint((T0370)S67.CB, (T0370)P91.CB) [> 4.1159 = 6.8598 < 8.9178] w=0.5059 to align # Constraint # added constraint: constraint((T0370)L97.CB, (T0370)Y122.CB) [> 3.5768 = 5.9613 < 7.7497] w=0.5011 to align # Constraint # added constraint: constraint((T0370)A55.CB, (T0370)V101.CB) [> 4.0306 = 6.7177 < 8.7330] w=0.4994 to align # Constraint # added constraint: constraint((T0370)T30.CB, (T0370)R73.CB) [> 3.2720 = 5.4534 < 7.0894] w=0.4790 to align # Constraint # added constraint: constraint((T0370)L53.CB, (T0370)V101.CB) [> 3.0331 = 5.0551 < 6.5716] w=0.4709 to align # Constraint # added constraint: constraint((T0370)E86.CB, (T0370)Q131.CB) [> 4.5248 = 7.5413 < 9.8037] w=0.4668 to align # Constraint # added constraint: constraint((T0370)L92.CB, (T0370)V101.CB) [> 3.5694 = 5.9489 < 7.7336] w=0.4542 to align # Constraint # added constraint: constraint((T0370)V24.CB, (T0370)Y45.CB) [> 3.7294 = 6.2156 < 8.0803] w=0.4542 to align # Constraint # added constraint: constraint((T0370)G63.CA, (T0370)L121.CB) [> 4.1705 = 6.9509 < 9.0362] w=0.4536 to align # Constraint # added constraint: constraint((T0370)E50.CB, (T0370)P127.CB) [> 3.2052 = 5.3420 < 6.9446] w=0.4536 to align # Constraint # added constraint: constraint((T0370)S29.CB, (T0370)V41.CB) [> 3.8229 = 6.3715 < 8.2830] w=0.4536 to align # Constraint # added constraint: constraint((T0370)V72.CB, (T0370)F123.CB) [> 4.5485 = 7.5809 < 9.8551] w=0.4486 to align # Constraint # added constraint: constraint((T0370)A59.CB, (T0370)S119.CB) [> 3.3428 = 5.5713 < 7.2427] w=0.4462 to align # Constraint # added constraint: constraint((T0370)L53.CB, (T0370)T104.CB) [> 3.8546 = 6.4243 < 8.3516] w=0.4392 to align # Constraint # added constraint: constraint((T0370)R19.CB, (T0370)V83.CB) [> 3.1440 = 5.2400 < 6.8120] w=0.4375 to align # Constraint # added constraint: constraint((T0370)R19.CB, (T0370)I76.CB) [> 3.6386 = 6.0644 < 7.8837] w=0.4375 to align # Constraint # added constraint: constraint((T0370)A26.CB, (T0370)F52.CB) [> 4.4129 = 7.3548 < 9.5613] w=0.4341 to align # Constraint # added constraint: constraint((T0370)P98.CB, (T0370)Y122.CB) [> 3.3171 = 5.5285 < 7.1870] w=0.4341 to align # Constraint # added constraint: constraint((T0370)L53.CB, (T0370)L92.CB) [> 4.3265 = 7.2108 < 9.3740] w=0.4311 to align # Constraint # added constraint: constraint((T0370)A31.CB, (T0370)G70.CA) [> 4.5483 = 7.5805 < 9.8546] w=0.4208 to align # Constraint # added constraint: constraint((T0370)L46.CB, (T0370)T104.CB) [> 2.8749 = 4.7914 < 6.2288] w=0.4174 to align # Constraint # added constraint: constraint((T0370)L74.CB, (T0370)E86.CB) [> 4.7059 = 7.8432 < 10.1961] w=0.4057 to align # Constraint # added constraint: constraint((T0370)G63.CA, (T0370)F123.CB) [> 4.4035 = 7.3391 < 9.5409] w=0.4035 to align # Constraint # added constraint: constraint((T0370)L20.CB, (T0370)W47.CB) [> 3.2179 = 5.3631 < 6.9721] w=0.4008 to align # Constraint # added constraint: constraint((T0370)T16.CB, (T0370)V130.CB) [> 3.4754 = 5.7923 < 7.5300] w=0.4007 to align # Constraint # added constraint: constraint((T0370)L20.CB, (T0370)P78.CB) [> 3.5501 = 5.9168 < 7.6918] w=0.3993 to align # Constraint # added constraint: constraint((T0370)A26.CB, (T0370)G77.CA) [> 4.4798 = 7.4664 < 9.7063] w=0.3989 to align # Constraint # added constraint: constraint((T0370)V24.CB, (T0370)G77.CA) [> 3.9286 = 6.5476 < 8.5119] w=0.3874 to align # Constraint # added constraint: constraint((T0370)D25.CB, (T0370)I76.CB) [> 4.4394 = 7.3990 < 9.6187] w=0.3842 to align # Constraint # added constraint: constraint((T0370)D81.CB, (T0370)W133.CB) [> 3.6294 = 6.0490 < 7.8636] w=0.3810 to align # Constraint # added constraint: constraint((T0370)L84.CB, (T0370)W133.CB) [> 4.4021 = 7.3368 < 9.5379] w=0.3794 to align # Constraint # added constraint: constraint((T0370)G102.CA, (T0370)Y122.CB) [> 4.1308 = 6.8846 < 8.9500] w=0.3724 to align # Constraint # added constraint: constraint((T0370)G70.CA, (T0370)L90.CB) [> 4.4523 = 7.4204 < 9.6466] w=0.3723 to align # Constraint # added constraint: constraint((T0370)E93.CB, (T0370)L121.CB) [> 3.7890 = 6.3150 < 8.2095] w=0.3716 to align # Constraint # added constraint: constraint((T0370)L74.CB, (T0370)G87.CA) [> 4.4826 = 7.4710 < 9.7124] w=0.3716 to align # Constraint # added constraint: constraint((T0370)D25.CB, (T0370)P42.CB) [> 3.4459 = 5.7431 < 7.4661] w=0.3684 to align # Constraint # added constraint: constraint((T0370)L46.CB, (T0370)F105.CB) [> 2.9866 = 4.9777 < 6.4711] w=0.3674 to align # Constraint # added constraint: constraint((T0370)P91.CB, (T0370)R124.CB) [> 4.4847 = 7.4746 < 9.7170] w=0.3670 to align # Constraint # added constraint: constraint((T0370)A26.CB, (T0370)V54.CB) [> 4.4233 = 7.3721 < 9.5837] w=0.3661 to align # Constraint # added constraint: constraint((T0370)A31.CB, (T0370)V72.CB) [> 3.4613 = 5.7688 < 7.4994] w=0.3534 to align # Constraint # added constraint: constraint((T0370)R19.CB, (T0370)P78.CB) [> 4.1401 = 6.9002 < 8.9703] w=0.3508 to align # Constraint # added constraint: constraint((T0370)A31.CB, (T0370)L66.CB) [> 3.5376 = 5.8960 < 7.6648] w=0.3500 to align # Constraint # added constraint: constraint((T0370)D81.CB, (T0370)E135.CB) [> 3.6448 = 6.0746 < 7.8970] w=0.3476 to align # Constraint # added constraint: constraint((T0370)L84.CB, (T0370)R129.CB) [> 4.5519 = 7.5865 < 9.8625] w=0.3460 to align # Constraint # added constraint: constraint((T0370)L53.CB, (T0370)F105.CB) [> 3.8160 = 6.3599 < 8.2679] w=0.3390 to align # Constraint # added constraint: constraint((T0370)D25.CB, (T0370)L43.CB) [> 4.3155 = 7.1926 < 9.3504] w=0.3350 to align # Constraint # added constraint: constraint((T0370)T30.CB, (T0370)P61.CB) [> 4.6389 = 7.7314 < 10.0509] w=0.3327 to align # Constraint # added constraint: constraint((T0370)W27.CB, (T0370)G77.CA) [> 4.3010 = 7.1683 < 9.3188] w=0.3318 to align # Constraint # added constraint: constraint((T0370)L43.CB, (T0370)T62.CB) [> 4.4504 = 7.4174 < 9.6426] w=0.3317 to align # Constraint # added constraint: constraint((T0370)P57.CB, (T0370)T118.CB) [> 3.1974 = 5.3290 < 6.9277] w=0.3206 to align # Constraint # added constraint: constraint((T0370)S29.CB, (T0370)V54.CB) [> 4.0709 = 6.7849 < 8.8204] w=0.3166 to align # Constraint # added constraint: constraint((T0370)T56.CB, (T0370)Y122.CB) [> 4.4334 = 7.3890 < 9.6057] w=0.3056 to align # Constraint # added constraint: constraint((T0370)V24.CB, (T0370)S44.CB) [> 3.6416 = 6.0693 < 7.8901] w=0.3056 to align # Constraint # added constraint: constraint((T0370)T30.CB, (T0370)A89.CB) [> 4.5668 = 7.6113 < 9.8947] w=0.3039 to align # Constraint # added constraint: constraint((T0370)L43.CB, (T0370)A55.CB) [> 4.4745 = 7.4576 < 9.6948] w=0.3033 to align # Constraint # added constraint: constraint((T0370)E93.CB, (T0370)Y122.CB) [> 4.4796 = 7.4660 < 9.7058] w=0.3017 to align # Constraint # added constraint: constraint((T0370)A31.CB, (T0370)G63.CA) [> 4.3256 = 7.2094 < 9.3722] w=0.2999 to align # Constraint # added constraint: constraint((T0370)Y45.CB, (T0370)I76.CB) [> 4.5278 = 7.5464 < 9.8103] w=0.2993 to align # Constraint # added constraint: constraint((T0370)S29.CB, (T0370)P42.CB) [> 4.5362 = 7.5604 < 9.8285] w=0.2983 to align # Constraint # added constraint: constraint((T0370)E50.CB, (T0370)R124.CB) [> 3.8551 = 6.4251 < 8.3526] w=0.2959 to align # Constraint # added constraint: constraint((T0370)L20.CB, (T0370)F52.CB) [> 4.2943 = 7.1571 < 9.3043] w=0.2839 to align # Constraint # added constraint: constraint((T0370)S29.CB, (T0370)L43.CB) [> 3.1140 = 5.1899 < 6.7469] w=0.2832 to align # Constraint # added constraint: constraint((T0370)D34.CB, (T0370)E68.CB) [> 3.6509 = 6.0849 < 7.9104] w=0.2802 to align # Constraint # added constraint: constraint((T0370)L82.CB, (T0370)Q131.CB) [> 4.6006 = 7.6677 < 9.9681] w=0.2792 to align # Constraint # added constraint: constraint((T0370)L17.CB, (T0370)V83.CB) [> 3.7838 = 6.3064 < 8.1983] w=0.2688 to align # Constraint # added constraint: constraint((T0370)A31.CB, (T0370)T62.CB) [> 3.2389 = 5.3981 < 7.0176] w=0.2665 to align # Constraint # added constraint: constraint((T0370)I13.CB, (T0370)V130.CB) [> 3.9964 = 6.6607 < 8.6589] w=0.2656 to align # Constraint # added constraint: constraint((T0370)G63.CA, (T0370)P91.CB) [> 3.7617 = 6.2695 < 8.1504] w=0.2555 to align # Constraint # added constraint: constraint((T0370)L74.CB, (T0370)V83.CB) [> 4.6962 = 7.8271 < 10.1752] w=0.2505 to align # Constraint # added constraint: constraint((T0370)S44.CB, (T0370)K108.CB) [> 4.3462 = 7.2437 < 9.4168] w=0.2338 to align # Constraint # added constraint: constraint((T0370)T16.CB, (T0370)D81.CB) [> 4.4119 = 7.3531 < 9.5591] w=0.2307 to align # Constraint # added constraint: constraint((T0370)P57.CB, (T0370)T117.CB) [> 4.4261 = 7.3768 < 9.5899] w=0.2307 to align # Constraint # added constraint: constraint((T0370)T30.CB, (T0370)V41.CB) [> 4.3893 = 7.3155 < 9.5102] w=0.2221 to align # Constraint # added constraint: constraint((T0370)D15.CB, (T0370)A132.CB) [> 3.9814 = 6.6357 < 8.6264] w=0.2204 to align # Constraint # added constraint: constraint((T0370)S44.CB, (T0370)T109.CB) [> 3.6260 = 6.0434 < 7.8564] w=0.2171 to align # Constraint # added constraint: constraint((T0370)S44.CB, (T0370)F105.CB) [> 3.9150 = 6.5251 < 8.4826] w=0.2171 to align # Constraint # added constraint: constraint((T0370)V28.CB, (T0370)I76.CB) [> 4.6248 = 7.7080 < 10.0205] w=0.2171 to align # Constraint # added constraint: constraint((T0370)A33.CB, (T0370)R64.CB) [> 4.1709 = 6.9514 < 9.0369] w=0.2165 to align # Constraint # added constraint: constraint((T0370)W27.CB, (T0370)Y45.CB) [> 3.2518 = 5.4196 < 7.0455] w=0.2155 to align # Constraint # added constraint: constraint((T0370)R12.CB, (T0370)V83.CB) [> 4.0070 = 6.6783 < 8.6818] w=0.2155 to align # Constraint # added constraint: constraint((T0370)G102.CA, (T0370)L116.CB) [> 4.1721 = 6.9535 < 9.0395] w=0.2155 to align # Constraint # added constraint: constraint((T0370)Q131.CB, (T0370)R142.CB) [> 3.8788 = 6.4646 < 8.4040] w=0.2140 to align # Constraint # added constraint: constraint((T0370)L46.CB, (T0370)A55.CB) [> 4.1909 = 6.9848 < 9.0802] w=0.2125 to align # Constraint # added constraint: constraint((T0370)P38.CB, (T0370)R73.CB) [> 4.5325 = 7.5541 < 9.8203] w=0.2054 to align # Constraint # added constraint: constraint((T0370)R19.CB, (T0370)L82.CB) [> 4.1919 = 6.9865 < 9.0824] w=0.2037 to align # Constraint # added constraint: constraint((T0370)V85.CB, (T0370)Q131.CB) [> 4.6892 = 7.8154 < 10.1600] w=0.2037 to align # Constraint # added constraint: constraint((T0370)W27.CB, (T0370)F52.CB) [> 4.4782 = 7.4637 < 9.7028] w=0.2004 to align # Constraint # added constraint: constraint((T0370)T16.CB, (T0370)Q131.CB) [> 4.4263 = 7.3771 < 9.5903] w=0.2004 to align # Constraint # added constraint: constraint((T0370)V54.CB, (T0370)A89.CB) [> 4.4411 = 7.4019 < 9.6224] w=0.2004 to align # Constraint # added constraint: constraint((T0370)A58.CB, (T0370)S67.CB) [> 4.3919 = 7.3198 < 9.5158] w=0.2004 to align # Constraint # added constraint: constraint((T0370)T30.CB, (T0370)G75.CA) [> 4.6411 = 7.7351 < 10.0557] w=0.1996 to align # Constraint # added constraint: constraint((T0370)T56.CB, (T0370)L66.CB) [> 4.7007 = 7.8344 < 10.1847] w=0.1981 to align # Constraint # added constraint: constraint((T0370)I13.CB, (T0370)V24.CB) [> 4.1264 = 6.8773 < 8.9406] w=0.1981 to align # Constraint # added constraint: constraint((T0370)R80.CB, (T0370)E135.CB) [> 2.2637 = 3.7728 < 4.9047] w=0.1973 to align # Constraint # added constraint: constraint((T0370)W133.CB, (T0370)R142.CB) [> 3.2759 = 5.4598 < 7.0977] w=0.1973 to align # Constraint # added constraint: constraint((T0370)Q131.CB, (T0370)M145.CB) [> 4.3965 = 7.3275 < 9.5258] w=0.1973 to align # Constraint # added constraint: constraint((T0370)Q131.CB, (T0370)L144.CB) [> 2.7558 = 4.5930 < 5.9709] w=0.1973 to align # Constraint # added constraint: constraint((T0370)V130.CB, (T0370)L144.CB) [> 4.3995 = 7.3325 < 9.5323] w=0.1973 to align # Constraint # added constraint: constraint((T0370)R129.CB, (T0370)M145.CB) [> 3.9599 = 6.5998 < 8.5797] w=0.1973 to align # Constraint # added constraint: constraint((T0370)R129.CB, (T0370)L144.CB) [> 4.0341 = 6.7235 < 8.7406] w=0.1973 to align # Constraint # added constraint: constraint((T0370)L82.CB, (T0370)R134.CB) [> 4.6424 = 7.7374 < 10.0586] w=0.1957 to align # Constraint # added constraint: constraint((T0370)V101.CB, (T0370)R124.CB) [> 4.1003 = 6.8338 < 8.8840] w=0.1870 to align # Constraint # added constraint: constraint((T0370)P98.CB, (T0370)L121.CB) [> 4.4388 = 7.3980 < 9.6174] w=0.1837 to align # Constraint # added constraint: constraint((T0370)V41.CB, (T0370)S60.CB) [> 4.2388 = 7.0647 < 9.1841] w=0.1814 to align # Constraint # added constraint: constraint((T0370)E143.CB, (T0370)V152.CB) [> 4.0724 = 6.7873 < 8.8234] w=0.1798 to align # Constraint # added constraint: constraint((T0370)D48.CB, (T0370)R124.CB) [> 3.4609 = 5.7682 < 7.4987] w=0.1790 to align # Constraint # added constraint: constraint((T0370)F105.CB, (T0370)Y122.CB) [> 3.8191 = 6.3652 < 8.2748] w=0.1720 to align # Constraint # added constraint: constraint((T0370)W27.CB, (T0370)S44.CB) [> 4.4093 = 7.3489 < 9.5535] w=0.1671 to align # Constraint # added constraint: constraint((T0370)Y45.CB, (T0370)F105.CB) [> 4.2285 = 7.0474 < 9.1617] w=0.1670 to align # Constraint # added constraint: constraint((T0370)A9.CB, (T0370)V130.CB) [> 3.9149 = 6.5248 < 8.4823] w=0.1639 to align # Constraint # added constraint: constraint((T0370)L66.CB, (T0370)L90.CB) [> 4.3212 = 7.2020 < 9.3625] w=0.1553 to align # Constraint # added constraint: constraint((T0370)A58.CB, (T0370)T118.CB) [> 4.2738 = 7.1230 < 9.2598] w=0.1521 to align # Constraint # added constraint: constraint((T0370)D23.CB, (T0370)S44.CB) [> 4.2317 = 7.0529 < 9.1687] w=0.1521 to align # Constraint # added constraint: constraint((T0370)A31.CB, (T0370)A89.CB) [> 4.5475 = 7.5792 < 9.8530] w=0.1519 to align # Constraint # added constraint: constraint((T0370)V54.CB, (T0370)R124.CB) [> 4.4876 = 7.4794 < 9.7233] w=0.1506 to align # Constraint # added constraint: constraint((T0370)L17.CB, (T0370)E50.CB) [> 4.0669 = 6.7782 < 8.8116] w=0.1503 to align # Constraint # added constraint: constraint((T0370)G36.CA, (T0370)T69.CB) [> 4.5878 = 7.6463 < 9.9402] w=0.1503 to align # Constraint # added constraint: constraint((T0370)R71.CB, (T0370)R128.CB) [> 4.5720 = 7.6200 < 9.9060] w=0.1503 to align # Constraint # added constraint: constraint((T0370)R80.CB, (T0370)W133.CB) [> 4.1006 = 6.8343 < 8.8846] w=0.1503 to align # Constraint # added constraint: constraint((T0370)A55.CB, (T0370)T109.CB) [> 4.3046 = 7.1744 < 9.3267] w=0.1503 to align # Constraint # added constraint: constraint((T0370)G49.CA, (T0370)S126.CB) [> 4.5478 = 7.5797 < 9.8536] w=0.1480 to align # Constraint # added constraint: constraint((T0370)L53.CB, (T0370)G102.CA) [> 4.0144 = 6.6907 < 8.6979] w=0.1386 to align # Constraint # added constraint: constraint((T0370)G102.CA, (T0370)Y120.CB) [> 4.5652 = 7.6087 < 9.8913] w=0.1336 to align # Constraint # added constraint: constraint((T0370)D81.CB, (T0370)A136.CB) [> 4.5382 = 7.5637 < 9.8328] w=0.1336 to align # Constraint # added constraint: constraint((T0370)F105.CB, (T0370)Y120.CB) [> 3.2099 = 5.3498 < 6.9548] w=0.1336 to align # Constraint # added constraint: constraint((T0370)A31.CB, (T0370)L40.CB) [> 4.6154 = 7.6924 < 10.0001] w=0.1330 to align # Constraint # added constraint: constraint((T0370)V28.CB, (T0370)T56.CB) [> 4.6445 = 7.7408 < 10.0631] w=0.1321 to align # Constraint # added constraint: constraint((T0370)A9.CB, (T0370)V83.CB) [> 3.9183 = 6.5305 < 8.4897] w=0.1320 to align # Constraint # added constraint: constraint((T0370)T8.CB, (T0370)A132.CB) [> 3.7292 = 6.2154 < 8.0800] w=0.1320 to align # Constraint # added constraint: constraint((T0370)L97.CB, (T0370)Y120.CB) [> 4.1520 = 6.9201 < 8.9961] w=0.1320 to align # Constraint # added constraint: constraint((T0370)R128.CB, (T0370)R146.CB) [> 4.1993 = 6.9989 < 9.0986] w=0.1305 to align # Constraint # added constraint: constraint((T0370)D25.CB, (T0370)G77.CA) [> 4.1596 = 6.9326 < 9.0124] w=0.1196 to align # Constraint # added constraint: constraint((T0370)L46.CB, (T0370)T109.CB) [> 4.3051 = 7.1752 < 9.3278] w=0.1169 to align # Constraint # added constraint: constraint((T0370)P5.CB, (T0370)M145.CB) [> 2.4509 = 4.0848 < 5.3102] w=0.1153 to align # Constraint # added constraint: constraint((T0370)T51.CB, (T0370)L90.CB) [> 4.1782 = 6.9637 < 9.0528] w=0.1115 to align # Constraint # added constraint: constraint((T0370)F52.CB, (T0370)S126.CB) [> 4.6547 = 7.7578 < 10.0851] w=0.1052 to align # Constraint # added constraint: constraint((T0370)G36.CA, (T0370)N65.CB) [> 4.5980 = 7.6633 < 9.9623] w=0.1052 to align # Constraint # added constraint: constraint((T0370)T56.CB, (T0370)P91.CB) [> 4.3318 = 7.2197 < 9.3856] w=0.1052 to align # Constraint # added constraint: constraint((T0370)G32.CA, (T0370)L66.CB) [> 4.2593 = 7.0988 < 9.2284] w=0.1035 to align # Constraint # added constraint: constraint((T0370)V28.CB, (T0370)F123.CB) [> 4.6219 = 7.7032 < 10.0141] w=0.1035 to align # Constraint # added constraint: constraint((T0370)A33.CB, (T0370)G63.CA) [> 3.8605 = 6.4341 < 8.3643] w=0.1019 to align # Constraint # added constraint: constraint((T0370)G32.CA, (T0370)R64.CB) [> 4.5545 = 7.5908 < 9.8680] w=0.1004 to align # Constraint # added constraint: constraint((T0370)V85.CB, (T0370)R128.CB) [> 4.5925 = 7.6542 < 9.9505] w=0.1002 to align # Constraint # added constraint: constraint((T0370)S60.CB, (T0370)L121.CB) [> 4.7456 = 7.9093 < 10.2821] w=0.1002 to align # Constraint # added constraint: constraint((T0370)G49.CA, (T0370)P127.CB) [> 3.6540 = 6.0900 < 7.9170] w=0.1002 to align # Constraint # added constraint: constraint((T0370)Y39.CB, (T0370)G63.CA) [> 3.3425 = 5.5708 < 7.2421] w=0.1002 to align # Constraint # added constraint: constraint((T0370)L22.CB, (T0370)W47.CB) [> 3.7558 = 6.2596 < 8.1375] w=0.1002 to align # Constraint # added constraint: constraint((T0370)L53.CB, (T0370)K108.CB) [> 3.3312 = 5.5519 < 7.2175] w=0.1002 to align # Constraint # added constraint: constraint((T0370)A9.CB, (T0370)W47.CB) [> 4.5126 = 7.5210 < 9.7774] w=0.0986 to align # Constraint # added constraint: constraint((T0370)Q131.CB, (T0370)V152.CB) [> 4.0827 = 6.8046 < 8.8460] w=0.0986 to align # Constraint # added constraint: constraint((T0370)P5.CB, (T0370)W150.CB) [> 3.6151 = 6.0252 < 7.8327] w=0.0986 to align # Constraint # added constraint: constraint((T0370)E143.CB, (T0370)T153.CB) [> 4.2059 = 7.0098 < 9.1128] w=0.0979 to align # Constraint # added constraint: constraint((T0370)L20.CB, (T0370)Y45.CB) [> 4.1170 = 6.8616 < 8.9201] w=0.0868 to align # Constraint # added constraint: constraint((T0370)D81.CB, (T0370)L139.CB) [> 3.4707 = 5.7844 < 7.5198] w=0.0835 to align # Constraint # added constraint: constraint((T0370)L22.CB, (T0370)S44.CB) [> 4.0949 = 6.8249 < 8.8723] w=0.0835 to align # Constraint # added constraint: constraint((T0370)Y45.CB, (T0370)A55.CB) [> 4.1509 = 6.9182 < 8.9936] w=0.0835 to align # Constraint # added constraint: constraint((T0370)Q131.CB, (T0370)S140.CB) [> 4.0521 = 6.7535 < 8.7795] w=0.0835 to align # Constraint # added constraint: constraint((T0370)P5.CB, (T0370)P127.CB) [> 4.2188 = 7.0313 < 9.1406] w=0.0819 to align # Constraint # added constraint: constraint((T0370)L144.CB, (T0370)T153.CB) [> 3.2396 = 5.3993 < 7.0191] w=0.0819 to align # Constraint # added constraint: constraint((T0370)S140.CB, (T0370)D154.CB) [> 2.4964 = 4.1607 < 5.4089] w=0.0819 to align # Constraint # added constraint: constraint((T0370)L139.CB, (T0370)D154.CB) [> 3.4199 = 5.6999 < 7.4098] w=0.0819 to align # Constraint # added constraint: constraint((T0370)K10.CB, (T0370)W47.CB) [> 4.2366 = 7.0610 < 9.1793] w=0.0804 to align # Constraint # added constraint: constraint((T0370)W47.CB, (T0370)R124.CB) [> 4.4227 = 7.3712 < 9.5825] w=0.0710 to align # Constraint # added constraint: constraint((T0370)A55.CB, (T0370)L116.CB) [> 3.4248 = 5.7080 < 7.4204] w=0.0701 to align # Constraint # added constraint: constraint((T0370)L22.CB, (T0370)P78.CB) [> 3.7801 = 6.3002 < 8.1902] w=0.0685 to align # Constraint # added constraint: constraint((T0370)A31.CB, (T0370)V41.CB) [> 4.2944 = 7.1573 < 9.3044] w=0.0685 to align # Constraint # added constraint: constraint((T0370)G75.CA, (T0370)A132.CB) [> 4.6437 = 7.7395 < 10.0614] w=0.0668 to align # Constraint # added constraint: constraint((T0370)L82.CB, (T0370)L139.CB) [> 4.4485 = 7.4142 < 9.6384] w=0.0668 to align # Constraint # added constraint: constraint((T0370)T69.CB, (T0370)T88.CB) [> 3.2224 = 5.3706 < 6.9818] w=0.0668 to align # Constraint # added constraint: constraint((T0370)S29.CB, (T0370)Y45.CB) [> 4.6248 = 7.7079 < 10.0203] w=0.0668 to align # Constraint # added constraint: constraint((T0370)V28.CB, (T0370)Y45.CB) [> 4.5640 = 7.6066 < 9.8886] w=0.0668 to align # Constraint # added constraint: constraint((T0370)S67.CB, (T0370)A89.CB) [> 4.7159 = 7.8598 < 10.2178] w=0.0660 to align # Constraint # added constraint: constraint((T0370)F52.CB, (T0370)G87.CA) [> 4.6668 = 7.7780 < 10.1114] w=0.0660 to align # Constraint # added constraint: constraint((T0370)A55.CB, (T0370)T117.CB) [> 3.9187 = 6.5312 < 8.4905] w=0.0660 to align # Constraint # added constraint: constraint((T0370)M1.CB, (T0370)L151.CB) [> 3.4293 = 5.7155 < 7.4301] w=0.0652 to align # Constraint # added constraint: constraint((T0370)L40.CB, (T0370)R73.CB) [> 4.3489 = 7.2482 < 9.4227] w=0.0551 to align # Constraint # added constraint: constraint((T0370)G32.CA, (T0370)V72.CB) [> 4.6815 = 7.8025 < 10.1432] w=0.0518 to align # Constraint # added constraint: constraint((T0370)L46.CB, (T0370)A106.CB) [> 4.6221 = 7.7035 < 10.0146] w=0.0501 to align # Constraint # added constraint: constraint((T0370)F52.CB, (T0370)F123.CB) [> 4.5907 = 7.6512 < 9.9466] w=0.0501 to align # Constraint # added constraint: constraint((T0370)A6.CB, (T0370)V130.CB) [> 4.5281 = 7.5468 < 9.8109] w=0.0501 to align # Constraint # added constraint: constraint((T0370)S44.CB, (T0370)T56.CB) [> 4.7242 = 7.8737 < 10.2358] w=0.0501 to align # Constraint # added constraint: constraint((T0370)A9.CB, (T0370)F52.CB) [> 4.7870 = 7.9784 < 10.3719] w=0.0501 to align # Constraint # added constraint: constraint((T0370)W27.CB, (T0370)V85.CB) [> 4.6280 = 7.7134 < 10.0274] w=0.0501 to align # Constraint # added constraint: constraint((T0370)S44.CB, (T0370)D112.CB) [> 3.6068 = 6.0114 < 7.8148] w=0.0501 to align # Constraint # added constraint: constraint((T0370)D48.CB, (T0370)S126.CB) [> 4.4915 = 7.4858 < 9.7316] w=0.0501 to align # Constraint # added constraint: constraint((T0370)Y39.CB, (T0370)L66.CB) [> 4.7415 = 7.9025 < 10.2732] w=0.0501 to align # Constraint # added constraint: constraint((T0370)Y39.CB, (T0370)A58.CB) [> 4.0272 = 6.7119 < 8.7255] w=0.0501 to align # Constraint # added constraint: constraint((T0370)V41.CB, (T0370)T56.CB) [> 3.4583 = 5.7638 < 7.4930] w=0.0501 to align # Constraint # added constraint: constraint((T0370)V41.CB, (T0370)A59.CB) [> 3.4533 = 5.7555 < 7.4822] w=0.0501 to align # Constraint # added constraint: constraint((T0370)I13.CB, (T0370)I76.CB) [> 4.6994 = 7.8324 < 10.1821] w=0.0486 to align # Constraint # added constraint: constraint((T0370)A9.CB, (T0370)A132.CB) [> 4.7367 = 7.8944 < 10.2628] w=0.0486 to align # Constraint # added constraint: constraint((T0370)E50.CB, (T0370)R128.CB) [> 4.6352 = 7.7253 < 10.0429] w=0.0479 to align # Constraint # added constraint: constraint((T0370)G32.CA, (T0370)G70.CA) [> 4.6247 = 7.7078 < 10.0202] w=0.0384 to align # Constraint # added constraint: constraint((T0370)P57.CB, (T0370)L116.CB) [> 4.5700 = 7.6167 < 9.9017] w=0.0367 to align # Constraint # added constraint: constraint((T0370)A6.CB, (T0370)R134.CB) [> 4.0695 = 6.7825 < 8.8172] w=0.0334 to align # Constraint # added constraint: constraint((T0370)V83.CB, (T0370)L139.CB) [> 3.5333 = 5.8889 < 7.6556] w=0.0334 to align # Constraint # added constraint: constraint((T0370)T109.CB, (T0370)Y120.CB) [> 3.5773 = 5.9621 < 7.7508] w=0.0334 to align # Constraint # added constraint: constraint((T0370)T8.CB, (T0370)V130.CB) [> 4.7068 = 7.8447 < 10.1981] w=0.0334 to align # Constraint # added constraint: constraint((T0370)V28.CB, (T0370)Y39.CB) [> 4.6008 = 7.6680 < 9.9685] w=0.0334 to align # Constraint # added constraint: constraint((T0370)L40.CB, (T0370)K108.CB) [> 3.1427 = 5.2379 < 6.8093] w=0.0319 to align # Constraint # added constraint: constraint((T0370)P42.CB, (T0370)A106.CB) [> 4.3073 = 7.1789 < 9.3325] w=0.0319 to align # Constraint # added constraint: constraint((T0370)P42.CB, (T0370)T109.CB) [> 3.1071 = 5.1785 < 6.7320] w=0.0319 to align # Constraint # added constraint: constraint((T0370)P5.CB, (T0370)L151.CB) [> 4.6280 = 7.7134 < 10.0274] w=0.0319 to align # Constraint # added constraint: constraint((T0370)A33.CB, (T0370)G70.CA) [> 4.6650 = 7.7750 < 10.1074] w=0.0303 to align # Constraint # added constraint: constraint((T0370)Y45.CB, (T0370)G77.CA) [> 4.3885 = 7.3141 < 9.5083] w=0.0200 to align # Constraint # added constraint: constraint((T0370)R12.CB, (T0370)L151.CB) [> 3.0632 = 5.1053 < 6.6369] w=0.0167 to align # Constraint # added constraint: constraint((T0370)T79.CB, (T0370)R134.CB) [> 4.7809 = 7.9682 < 10.3586] w=0.0167 to align # Constraint # added constraint: constraint((T0370)I13.CB, (T0370)T153.CB) [> 4.5084 = 7.5140 < 9.7682] w=0.0167 to align # Constraint # added constraint: constraint((T0370)R80.CB, (T0370)G148.CA) [> 4.2588 = 7.0980 < 9.2274] w=0.0167 to align # Constraint # added constraint: constraint((T0370)A26.CB, (T0370)T79.CB) [> 4.7510 = 7.9184 < 10.2939] w=0.0167 to align # Constraint # added constraint: constraint((T0370)R129.CB, (T0370)R142.CB) [> 4.5082 = 7.5136 < 9.7677] w=0.0167 to align # Constraint # added constraint: constraint((T0370)A6.CB, (T0370)T51.CB) [> 4.4702 = 7.4504 < 9.6855] w=0.0167 to align # Constraint # added constraint: constraint((T0370)G35.CA, (T0370)T69.CB) [> 4.7779 = 7.9631 < 10.3521] w=0.0167 to align # Constraint # added constraint: constraint((T0370)T79.CB, (T0370)M145.CB) [> 4.6919 = 7.8198 < 10.1658] w=0.0167 to align # Constraint # added constraint: constraint((T0370)R129.CB, (T0370)S140.CB) [> 4.5537 = 7.5895 < 9.8664] w=0.0167 to align # Constraint # added constraint: constraint((T0370)R129.CB, (T0370)V152.CB) [> 4.4212 = 7.3686 < 9.5792] w=0.0167 to align # Constraint # added constraint: constraint((T0370)V130.CB, (T0370)L151.CB) [> 4.6040 = 7.6733 < 9.9753] w=0.0167 to align # Constraint # added constraint: constraint((T0370)V130.CB, (T0370)V152.CB) [> 4.1772 = 6.9620 < 9.0506] w=0.0167 to align # Constraint # added constraint: constraint((T0370)W133.CB, (T0370)W150.CB) [> 3.4393 = 5.7322 < 7.4519] w=0.0167 to align # Constraint # added constraint: constraint((T0370)A132.CB, (T0370)V152.CB) [> 4.5259 = 7.5432 < 9.8062] w=0.0167 to align # Constraint # added constraint: constraint((T0370)A132.CB, (T0370)W150.CB) [> 4.2312 = 7.0520 < 9.1676] w=0.0167 to align # Constraint # added constraint: constraint((T0370)A132.CB, (T0370)E149.CB) [> 4.7415 = 7.9024 < 10.2732] w=0.0167 to align # Constraint # added constraint: constraint((T0370)Q131.CB, (T0370)L151.CB) [> 4.4290 = 7.3818 < 9.5963] w=0.0167 to align # Constraint # added constraint: constraint((T0370)Q131.CB, (T0370)W150.CB) [> 4.3223 = 7.2038 < 9.3649] w=0.0167 to align # Constraint # added constraint: constraint((T0370)A37.CB, (T0370)R64.CB) [> 4.7466 = 7.9109 < 10.2842] w=0.0167 to align # Constraint # added constraint: constraint((T0370)A37.CB, (T0370)E68.CB) [> 4.6685 = 7.7808 < 10.1150] w=0.0167 to align # Constraint # added constraint: constraint((T0370)F105.CB, (T0370)T117.CB) [> 4.5528 = 7.5881 < 9.8645] w=0.0167 to align # Constraint # added constraint: constraint((T0370)L82.CB, (T0370)N137.CB) [> 3.8057 = 6.3429 < 8.2458] w=0.0167 to align # Constraint # added constraint: constraint((T0370)V41.CB, (T0370)L53.CB) [> 3.7004 = 6.1674 < 8.0176] w=0.0167 to align # Constraint # added constraint: constraint((T0370)P42.CB, (T0370)P127.CB) [> 4.5520 = 7.5867 < 9.8627] w=0.0167 to align # Constraint # added constraint: constraint((T0370)P42.CB, (T0370)I125.CB) [> 2.5424 = 4.2373 < 5.5086] w=0.0167 to align # Constraint # added constraint: constraint((T0370)P42.CB, (T0370)R124.CB) [> 3.8136 = 6.3560 < 8.2628] w=0.0167 to align # Constraint # added constraint: constraint((T0370)P42.CB, (T0370)V54.CB) [> 4.1188 = 6.8647 < 8.9241] w=0.0167 to align # Constraint # added constraint: constraint((T0370)P42.CB, (T0370)L53.CB) [> 3.6702 = 6.1170 < 7.9521] w=0.0167 to align # Constraint # added constraint: constraint((T0370)W27.CB, (T0370)L46.CB) [> 3.3696 = 5.6160 < 7.3008] w=0.0160 to align # Constraint # added constraint: constraint((T0370)R12.CB, (T0370)V152.CB) [> 4.7915 = 7.9859 < 10.3817] w=0.0152 to align # Constraint # added constraint: constraint((T0370)P38.CB, (T0370)R71.CB) [> 4.7516 = 7.9194 < 10.2952] w=0.0050 to align # Constraint # added constraint: constraint((T0370)P38.CB, (T0370)N65.CB) [> 4.1926 = 6.9876 < 9.0838] w=0.0050 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0370/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0370/decoys/ # ReadConformPDB reading from PDB file chimera-43-31.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 149 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-43-44.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-47-31.pdb.gz looking for model 1 WARNING: atom 206 has residue number 27 < previous residue 46 in chimera-47-31.pdb.gz # Found a chain break before 149 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera30-33-30.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera30-33.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera64-46-no2.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera64-46.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr370.gromacs0.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr370.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr370.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr370.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 Skipped atom 62, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 64, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 66, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 68, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 310, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 312, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 314, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 316, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 366, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 368, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 370, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 372, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 482, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 484, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 486, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 488, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 Skipped atom 169, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 502, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 Skipped atom 62, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 64, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 66, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 68, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 310, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 312, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 314, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 316, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 366, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 368, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 370, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 372, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 482, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 484, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 486, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 488, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 Skipped atom 169, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 502, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 Skipped atom 58, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 60, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 62, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 64, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 354, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 356, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 358, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 360, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 470, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 472, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 474, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 476, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 Skipped atom 138, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL4.pdb.gz Skipped atom 140, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL4.pdb.gz Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL4.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL4.pdb.gz # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Skipped atom 110, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 112, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 114, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 116, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 Skipped atom 138, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 140, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 Skipped atom 169, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 Skipped atom 98, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz Skipped atom 100, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz Skipped atom 102, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz Skipped atom 104, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 Skipped atom 169, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 Skipped atom 62, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 64, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 66, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 68, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 310, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 312, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 314, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 316, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 366, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 368, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 370, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 372, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 478, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 480, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 482, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz Skipped atom 484, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL4.pdb.gz # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 Skipped atom 433, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 434, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 435, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 436, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 441, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 442, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 443, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 444, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 449, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 450, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 451, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 452, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 457, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 458, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 459, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 460, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 465, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 466, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 467, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 468, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 473, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 474, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 475, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 476, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 481, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 482, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 483, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 484, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 489, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 490, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 491, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 492, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 497, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 499, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 505, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 506, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 507, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 508, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 513, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 515, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 521, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 522, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 523, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 524, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 529, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 531, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0370)T117.O and (T0370)T118.N only 0.000 apart, marking (T0370)T118.N as missing # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/panther3_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # naming current conformation panther3_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0370 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 277 model score -0.3502 model score -0.3203 model score -0.3664 model score -0.4116 model score -0.3349 model score -0.5651 model score -0.5680 model score -0.5677 model score -0.5731 model score -0.5809 model score -0.5835 model score -0.1076 model score -0.1133 model score -0.1037 model score 0.0671 model score -0.1319 model score 0.4502 model score -0.1539 model score -0.1539 model score -0.3390 model score -0.3390 model score 0.4376 model score 0.3996 model score 0.4069 model score 0.4516 model score 0.4392 model score -0.3594 model score -0.3937 model score -0.1902 model score 1.0917 model score -0.3845 model score 1.4704 model score 1.6497 model score 1.4317 model score 1.3695 model score 1.4827 model score -0.4727 model score -0.3685 model score 0.8535 model score -0.4676 model score -0.4791 model score -0.4991 model score -0.4046 model score -0.4719 model score -0.3941 model score -0.1970 model score -0.3711 model score -0.2313 model score 1.4175 model score 1.2769 model score 1.2770 model score 1.2772 model score 1.2773 model score 1.2772 model score -0.4936 model score -0.0662 model score 0.1244 model score -0.0788 model score -0.4044 model score -0.4037 model score -0.4719 model score -0.4791 model score -0.4991 model score -0.4991 model score -0.2365 model score -0.0926 model score -0.3603 model score -0.2841 model score 1.0692 model score 1.2769 model score 1.2768 model score 1.2768 model score 1.2768 model score 1.2768 model score 1.2769 model score 1.2768 model score 1.2768 model score 1.2768 model score 1.2768 model score 1.9482 model score 2.0073 model score 2.3287 model score 2.0762 model score 2.1750 model score -0.3005 model score -0.3104 model score -0.0994 model score -0.3113 model score -0.3237 model score 1.2767 model score 1.2771 model score 1.2768 model score 1.2769 model score 1.2768 model score -0.1776 model score -0.2078 model score -0.2218 model score -0.2448 model score -0.2235 model score -0.0717 model score 0.7617 model score 0.8173 model score 0.0126 model score 0.4784 model score -0.3276 model score -0.0461 model score -0.4576 model score -0.3396 model score -0.2970 model score -0.3214 model score -0.4844 model score -0.4844 model score -0.3176 model score 1.3272 model score 0.9403 model score 0.9436 model score 1.9261 model score -0.2466 model score -0.0389 model score 1.5047 model score 0.2512 model score 0.0186 model score 1.2766 model score -0.4591 model score -0.4267 model score -0.3086 model score 0.7077 model score -0.4796 model score -0.4148 model score -0.4267 model score -0.5064 model score 0.7576 model score -0.4505 model score -0.5770 model score -0.3156 model score -0.3385 model score -0.5848 model score -0.5859 model score -0.2466 model score 2.4101 model score 1.9957 model score 2.3598 model score 2.5187 model score 2.0553 model score -0.4201 model score -0.4360 model score -0.4035 model score -0.4146 model score -0.4090 model score -0.4332 model score -0.4431 model score -0.4144 model score -0.4061 model score -0.4227 model score -0.2979 model score -0.3498 model score -0.3596 model score -0.3564 model score -0.2570 model score -0.4234 model score -0.3170 model score -0.3170 model score -0.3170 model score -0.4981 model score -0.4944 model score -0.4325 model score -0.4070 model score -0.3562 model score -0.3103 model score -0.3767 model score -0.4562 model score -0.3769 model score -0.4086 model score -0.2896 model score -0.4325 model score -0.4893 model score -0.4613 model score -0.4653 model score -0.2950 model score -0.4545 model score -0.5281 model score -0.5182 model score -0.4481 model score -0.2267 model score -0.4499 model score -0.4403 model score -0.2824 model score -0.2848 model score -0.4391 model score -0.4366 model score -0.4642 model score -0.4440 model score -0.2548 model score -0.2198 model score -0.1989 model score 1.2766 model score 1.2766 model score 1.2765 model score 1.2767 model score 1.2766 model score 1.2768 model score 1.2768 model score 1.2768 model score 1.2768 model score 1.2768 model score -0.4675 model score -0.1071 model score -0.4318 model score -0.4625 model score -0.2380 model score -0.4147 model score -0.4460 model score -0.4086 model score -0.1756 model score -0.4027 model score -0.4019 model score -0.4086 model score -0.4460 model score -0.3519 model score -0.2015 model score -0.3833 model score -0.4430 model score -0.4086 model score -0.2394 model score -0.4027 model score 1.2769 model score 1.2768 model score 1.2768 model score 1.2768 model score 1.2769 model score -0.5460 model score 1.2769 model score 1.2768 model score 1.2768 model score 1.2768 model score 1.2769 model score -0.5417 model score -0.5292 model score -0.5300 model score -0.5729 model score -0.5560 model score -0.4989 model score -0.4892 model score 1.2768 model score 1.2768 model score 1.2767 model score 1.2768 model score 1.2768 model score -0.3752 model score -0.4355 model score -0.4396 model score -0.4509 model score -0.3492 model score 2.0698 model score 1.9657 model score 2.3560 model score 2.1356 model score 1.8984 model score -0.4649 model score -0.1856 model score -0.2074 model score -0.1908 model score 1.0789 model score -0.4021 model score -0.2740 model score -0.2670 model score -0.3811 model score -0.3168 model score -0.4901 model score -0.4769 model score -0.4267 model score -0.4465 model score -0.4263 model score -0.3818 model score 0.9544 model score 1.4230 model score -0.5221 weight: 0.9317 eval: -0.3502 min: -0.5859 max: 2.5187 weight: 0.9230 eval: -0.3203 min: -0.5859 max: 2.5187 weight: 0.9363 eval: -0.3664 min: -0.5859 max: 2.5187 weight: 0.9495 eval: -0.4116 min: -0.5859 max: 2.5187 weight: 0.9272 eval: -0.3349 min: -0.5859 max: 2.5187 weight: 0.9940 eval: -0.5651 min: -0.5859 max: 2.5187 weight: 0.9948 eval: -0.5680 min: -0.5859 max: 2.5187 weight: 0.9947 eval: -0.5677 min: -0.5859 max: 2.5187 weight: 0.9963 eval: -0.5731 min: -0.5859 max: 2.5187 weight: 0.9985 eval: -0.5809 min: -0.5859 max: 2.5187 weight: 0.9993 eval: -0.5835 min: -0.5859 max: 2.5187 weight: 0.8614 eval: -0.1076 min: -0.5859 max: 2.5187 weight: 0.8630 eval: -0.1133 min: -0.5859 max: 2.5187 weight: 0.8602 eval: -0.1037 min: -0.5859 max: 2.5187 weight: 0.8107 eval: 0.0671 min: -0.5859 max: 2.5187 weight: 0.8684 eval: -0.1319 min: -0.5859 max: 2.5187 weight: 0.6996 eval: 0.4502 min: -0.5859 max: 2.5187 weight: 0.8747 eval: -0.1539 min: -0.5859 max: 2.5187 weight: 0.8747 eval: -0.1539 min: -0.5859 max: 2.5187 weight: 0.9284 eval: -0.3390 min: -0.5859 max: 2.5187 weight: 0.9284 eval: -0.3390 min: -0.5859 max: 2.5187 weight: 0.7033 eval: 0.4376 min: -0.5859 max: 2.5187 weight: 0.7143 eval: 0.3996 min: -0.5859 max: 2.5187 weight: 0.7122 eval: 0.4069 min: -0.5859 max: 2.5187 weight: 0.6992 eval: 0.4516 min: -0.5859 max: 2.5187 weight: 0.7028 eval: 0.4392 min: -0.5859 max: 2.5187 weight: 0.9343 eval: -0.3594 min: -0.5859 max: 2.5187 weight: 0.9443 eval: -0.3937 min: -0.5859 max: 2.5187 weight: 0.8853 eval: -0.1902 min: -0.5859 max: 2.5187 weight: 0.5137 eval: 1.0917 min: -0.5859 max: 2.5187 weight: 0.9416 eval: -0.3845 min: -0.5859 max: 2.5187 weight: 0.4039 eval: 1.4704 min: -0.5859 max: 2.5187 weight: 0.3519 eval: 1.6497 min: -0.5859 max: 2.5187 weight: 0.4151 eval: 1.4317 min: -0.5859 max: 2.5187 weight: 0.4331 eval: 1.3695 min: -0.5859 max: 2.5187 weight: 0.4003 eval: 1.4827 min: -0.5859 max: 2.5187 weight: 0.9672 eval: -0.4727 min: -0.5859 max: 2.5187 weight: 0.9370 eval: -0.3685 min: -0.5859 max: 2.5187 weight: 0.5827 eval: 0.8535 min: -0.5859 max: 2.5187 weight: 0.9657 eval: -0.4676 min: -0.5859 max: 2.5187 weight: 0.9690 eval: -0.4791 min: -0.5859 max: 2.5187 weight: 0.9748 eval: -0.4991 min: -0.5859 max: 2.5187 weight: 0.9474 eval: -0.4046 min: -0.5859 max: 2.5187 weight: 0.9669 eval: -0.4719 min: -0.5859 max: 2.5187 weight: 0.9444 eval: -0.3941 min: -0.5859 max: 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weight: 0.4600 eval: 1.2769 min: -0.5859 max: 2.5187 weight: 0.4600 eval: 1.2768 min: -0.5859 max: 2.5187 weight: 0.4600 eval: 1.2768 min: -0.5859 max: 2.5187 weight: 0.4600 eval: 1.2768 min: -0.5859 max: 2.5187 weight: 0.4600 eval: 1.2769 min: -0.5859 max: 2.5187 weight: 0.9872 eval: -0.5417 min: -0.5859 max: 2.5187 weight: 0.9836 eval: -0.5292 min: -0.5859 max: 2.5187 weight: 0.9838 eval: -0.5300 min: -0.5859 max: 2.5187 weight: 0.9962 eval: -0.5729 min: -0.5859 max: 2.5187 weight: 0.9913 eval: -0.5560 min: -0.5859 max: 2.5187 weight: 0.9748 eval: -0.4989 min: -0.5859 max: 2.5187 weight: 0.9720 eval: -0.4892 min: -0.5859 max: 2.5187 weight: 0.4600 eval: 1.2768 min: -0.5859 max: 2.5187 weight: 0.4600 eval: 1.2768 min: -0.5859 max: 2.5187 weight: 0.4600 eval: 1.2767 min: -0.5859 max: 2.5187 weight: 0.4600 eval: 1.2768 min: -0.5859 max: 2.5187 weight: 0.4600 eval: 1.2768 min: -0.5859 max: 2.5187 weight: 0.9389 eval: -0.3752 min: -0.5859 max: 2.5187 weight: 0.9564 eval: -0.4355 min: -0.5859 max: 2.5187 weight: 0.9576 eval: -0.4396 min: -0.5859 max: 2.5187 weight: 0.9608 eval: -0.4509 min: -0.5859 max: 2.5187 weight: 0.9314 eval: -0.3492 min: -0.5859 max: 2.5187 weight: 0.2301 eval: 2.0698 min: -0.5859 max: 2.5187 weight: 0.2603 eval: 1.9657 min: -0.5859 max: 2.5187 weight: 0.1472 eval: 2.3560 min: -0.5859 max: 2.5187 weight: 0.2111 eval: 2.1356 min: -0.5859 max: 2.5187 weight: 0.2798 eval: 1.8984 min: -0.5859 max: 2.5187 weight: 0.9649 eval: -0.4649 min: -0.5859 max: 2.5187 weight: 0.8840 eval: -0.1856 min: -0.5859 max: 2.5187 weight: 0.8903 eval: -0.2074 min: -0.5859 max: 2.5187 weight: 0.8854 eval: -0.1908 min: -0.5859 max: 2.5187 weight: 0.5174 eval: 1.0789 min: -0.5859 max: 2.5187 weight: 0.9467 eval: -0.4021 min: -0.5859 max: 2.5187 weight: 0.9096 eval: -0.2740 min: -0.5859 max: 2.5187 weight: 0.9075 eval: -0.2670 min: -0.5859 max: 2.5187 weight: 0.9406 eval: -0.3811 min: -0.5859 max: 2.5187 weight: 0.9220 eval: -0.3168 min: -0.5859 max: 2.5187 weight: 0.9722 eval: -0.4901 min: -0.5859 max: 2.5187 weight: 0.9684 eval: -0.4769 min: -0.5859 max: 2.5187 weight: 0.9539 eval: -0.4267 min: -0.5859 max: 2.5187 weight: 0.9596 eval: -0.4465 min: -0.5859 max: 2.5187 weight: 0.9537 eval: -0.4263 min: -0.5859 max: 2.5187 weight: 0.9408 eval: -0.3818 min: -0.5859 max: 2.5187 weight: 0.5535 eval: 0.9544 min: -0.5859 max: 2.5187 weight: 0.4176 eval: 1.4230 min: -0.5859 max: 2.5187 weight: 0.9815 eval: -0.5221 min: -0.5859 max: 2.5187 Adding 5775 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -260.9560, CN propb: -260.9560 weights: 0.3224 constraints: 562 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 562 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 562 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 5213 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 5213 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 5775 # command: