# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0368/ # command:# Making conformation for sequence T0368 numbered 1 through 174 Created new target T0368 from T0368.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0368/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0368//projects/compbio/experiments/protein-predict/casp7/T0368/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0368//projects/compbio/experiments/protein-predict/casp7/T0368/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0368/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0368/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0368)L66.CB, (T0368)A75.CB) [> 2.8552 = 4.7586 < 6.1863] w=1.0000 to align # Constraint # added constraint: constraint((T0368)C33.CB, (T0368)G61.CA) [> 3.6512 = 6.0853 < 7.9109] w=0.9364 to align # Constraint # added constraint: constraint((T0368)A29.CB, (T0368)A65.CB) [> 3.2858 = 5.4764 < 7.1193] w=0.9342 to align # Constraint # added constraint: constraint((T0368)C33.CB, (T0368)C58.CB) [> 3.2536 = 5.4227 < 7.0495] w=0.9230 to align # Constraint # added constraint: constraint((T0368)Y26.CB, (T0368)A65.CB) [> 3.4649 = 5.7748 < 7.5073] w=0.9210 to align # Constraint # added constraint: constraint((T0368)C33.CB, (T0368)L62.CB) [> 2.6749 = 4.4581 < 5.7956] w=0.9098 to align # Constraint # added constraint: constraint((T0368)M37.CB, (T0368)C58.CB) [> 3.0448 = 5.0747 < 6.5971] w=0.8829 to align # Constraint # added constraint: constraint((T0368)A36.CB, (T0368)C58.CB) [> 2.9066 = 4.8444 < 6.2977] w=0.8694 to align # Constraint # added constraint: constraint((T0368)R34.CB, (T0368)L62.CB) [> 4.1990 = 6.9983 < 9.0978] w=0.8571 to align # Constraint # added constraint: constraint((T0368)Q20.CB, (T0368)A29.CB) [> 2.4120 = 4.0199 < 5.2259] w=0.8521 to align # Constraint # added constraint: constraint((T0368)A17.CB, (T0368)C33.CB) [> 2.7882 = 4.6469 < 6.0410] w=0.8152 to align # Constraint # added constraint: constraint((T0368)A17.CB, (T0368)N32.CB) [> 2.2529 = 3.7548 < 4.8812] w=0.8152 to align # Constraint # added constraint: constraint((T0368)M37.CB, (T0368)L62.CB) [> 4.1262 = 6.8770 < 8.9401] w=0.8125 to align # Constraint # added constraint: constraint((T0368)D16.CB, (T0368)N32.CB) [> 2.9249 = 4.8749 < 6.3373] w=0.7766 to align # Constraint # added constraint: constraint((T0368)Q18.CB, (T0368)A29.CB) [> 4.4253 = 7.3754 < 9.5881] w=0.7758 to align # Constraint # added constraint: constraint((T0368)A17.CB, (T0368)A29.CB) [> 2.7946 = 4.6576 < 6.0549] w=0.7374 to align # Constraint # added constraint: constraint((T0368)A17.CB, (T0368)A36.CB) [> 3.8513 = 6.4188 < 8.3444] w=0.7367 to align # Constraint # added constraint: constraint((T0368)A30.CB, (T0368)L66.CB) [> 4.1698 = 6.9496 < 9.0345] w=0.7363 to align # Constraint # added constraint: constraint((T0368)A63.CB, (T0368)A75.CB) [> 2.9994 = 4.9989 < 6.4986] w=0.7287 to align # Constraint # added constraint: constraint((T0368)Y26.CB, (T0368)L69.CB) [> 3.1864 = 5.3106 < 6.9038] w=0.7279 to align # Constraint # added constraint: constraint((T0368)L111.CB, (T0368)A120.CB) [> 2.5965 = 4.3275 < 5.6257] w=0.7273 to align # Constraint # added constraint: constraint((T0368)L14.CB, (T0368)A36.CB) [> 2.9192 = 4.8654 < 6.3250] w=0.7249 to align # Constraint # added constraint: constraint((T0368)A17.CB, (T0368)A30.CB) [> 4.5885 = 7.6475 < 9.9418] w=0.7240 to align # Constraint # added constraint: constraint((T0368)A79.CB, (T0368)A103.CB) [> 3.3628 = 5.6046 < 7.2860] w=0.7167 to align # Constraint # added constraint: constraint((T0368)A79.CB, (T0368)R107.CB) [> 2.7227 = 4.5379 < 5.8993] w=0.7148 to align # Constraint # added constraint: constraint((T0368)H59.CB, (T0368)A82.CB) [> 2.5715 = 4.2859 < 5.5717] w=0.7034 to align # Constraint # added constraint: constraint((T0368)L76.CB, (T0368)R107.CB) [> 3.8176 = 6.3627 < 8.2715] w=0.7025 to align # Constraint # added constraint: constraint((T0368)L14.CB, (T0368)C33.CB) [> 4.1436 = 6.9061 < 8.9779] w=0.6989 to align # Constraint # added constraint: constraint((T0368)M37.CB, (T0368)D55.CB) [> 4.0617 = 6.7695 < 8.8003] w=0.6959 to align # Constraint # added constraint: constraint((T0368)A63.CB, (T0368)S78.CB) [> 2.3406 = 3.9010 < 5.0713] w=0.6900 to align # Constraint # added constraint: constraint((T0368)L83.CB, (T0368)V104.CB) [> 3.9344 = 6.5573 < 8.5244] w=0.6783 to align # Constraint # added constraint: constraint((T0368)A63.CB, (T0368)A79.CB) [> 2.7694 = 4.6157 < 6.0004] w=0.6769 to align # Constraint # added constraint: constraint((T0368)H59.CB, (T0368)S78.CB) [> 3.1642 = 5.2737 < 6.8559] w=0.6764 to align # Constraint # added constraint: constraint((T0368)F72.CB, (T0368)A110.CB) [> 3.1450 = 5.2417 < 6.8143] w=0.6656 to align # Constraint # added constraint: constraint((T0368)A79.CB, (T0368)S106.CB) [> 3.1849 = 5.3082 < 6.9007] w=0.6649 to align # Constraint # added constraint: constraint((T0368)F72.CB, (T0368)L114.CB) [> 3.0036 = 5.0060 < 6.5078] w=0.6645 to align # Constraint # added constraint: constraint((T0368)L76.CB, (T0368)A110.CB) [> 3.1112 = 5.1853 < 6.7409] w=0.6635 to align # Constraint # added constraint: constraint((T0368)A79.CB, (T0368)A110.CB) [> 3.9624 = 6.6039 < 8.5851] w=0.6635 to align # Constraint # added constraint: constraint((T0368)L83.CB, (T0368)A103.CB) [> 2.9069 = 4.8448 < 6.2983] w=0.6524 to align # Constraint # added constraint: constraint((T0368)A75.CB, (T0368)A110.CB) [> 3.0424 = 5.0707 < 6.5919] w=0.6513 to align # Constraint # added constraint: constraint((T0368)L21.CB, (T0368)A65.CB) [> 3.7541 = 6.2568 < 8.1338] w=0.6470 to align # Constraint # added constraint: constraint((T0368)S40.CB, (T0368)D55.CB) [> 2.8318 = 4.7197 < 6.1356] w=0.6421 to align # Constraint # added constraint: constraint((T0368)A60.CB, (T0368)A82.CB) [> 2.8381 = 4.7302 < 6.1492] w=0.6368 to align # Constraint # added constraint: constraint((T0368)Y26.CB, (T0368)G68.CA) [> 3.7963 = 6.3272 < 8.2254] w=0.6362 to align # Constraint # added constraint: constraint((T0368)V104.CB, (T0368)E123.CB) [> 3.1993 = 5.3322 < 6.9318] w=0.6358 to align # Constraint # added constraint: constraint((T0368)Y105.CB, (T0368)V127.CB) [> 3.1705 = 5.2842 < 6.8694] w=0.6347 to align # Constraint # added constraint: constraint((T0368)A13.CB, (T0368)R35.CB) [> 2.9917 = 4.9862 < 6.4820] w=0.6301 to align # Constraint # added constraint: constraint((T0368)A56.CB, (T0368)A82.CB) [> 3.0948 = 5.1580 < 6.7055] w=0.6233 to align # Constraint # added constraint: constraint((T0368)L109.CB, (T0368)A120.CB) [> 4.2959 = 7.1598 < 9.3078] w=0.6220 to align # Constraint # added constraint: constraint((T0368)A60.CB, (T0368)S78.CB) [> 4.4479 = 7.4132 < 9.6372] w=0.6144 to align # Constraint # added constraint: constraint((T0368)D80.CB, (T0368)R107.CB) [> 4.1562 = 6.9271 < 9.0052] w=0.6127 to align # Constraint # added constraint: constraint((T0368)A108.CB, (T0368)F124.CB) [> 2.8277 = 4.7129 < 6.1267] w=0.6109 to align # Constraint # added constraint: constraint((T0368)A56.CB, (T0368)Y85.CB) [> 2.7384 = 4.5640 < 5.9331] w=0.6095 to align # Constraint # added constraint: constraint((T0368)A13.CB, (T0368)A36.CB) [> 2.6142 = 4.3570 < 5.6642] w=0.6051 to align # Constraint # added constraint: constraint((T0368)S40.CB, (T0368)C58.CB) [> 3.9330 = 6.5550 < 8.5215] w=0.6045 to align # Constraint # added constraint: constraint((T0368)H59.CB, (T0368)Y85.CB) [> 4.0900 = 6.8166 < 8.8616] w=0.5960 to align # Constraint # added constraint: constraint((T0368)L111.CB, (T0368)E123.CB) [> 3.8564 = 6.4274 < 8.3556] w=0.5848 to align # Constraint # added constraint: constraint((T0368)L83.CB, (T0368)R107.CB) [> 4.0581 = 6.7636 < 8.7926] w=0.5832 to align # Constraint # added constraint: constraint((T0368)D27.CB, (T0368)L69.CB) [> 4.1923 = 6.9872 < 9.0834] w=0.5668 to align # Constraint # added constraint: constraint((T0368)H41.CB, (T0368)D55.CB) [> 4.2320 = 7.0533 < 9.1692] w=0.5621 to align # Constraint # added constraint: constraint((T0368)A60.CB, (T0368)A79.CB) [> 4.1826 = 6.9710 < 9.0623] w=0.5611 to align # Constraint # added constraint: constraint((T0368)L14.CB, (T0368)C58.CB) [> 3.4132 = 5.6887 < 7.3953] w=0.5608 to align # Constraint # added constraint: constraint((T0368)F72.CB, (T0368)G113.CA) [> 3.5909 = 5.9849 < 7.7804] w=0.5590 to align # Constraint # added constraint: constraint((T0368)V104.CB, (T0368)F124.CB) [> 4.3997 = 7.3328 < 9.5326] w=0.5564 to align # Constraint # added constraint: constraint((T0368)A36.CB, (T0368)D55.CB) [> 4.2270 = 7.0449 < 9.1584] w=0.5491 to align # Constraint # added constraint: constraint((T0368)F86.CB, (T0368)A103.CB) [> 4.0601 = 6.7668 < 8.7969] w=0.5434 to align # Constraint # added constraint: constraint((T0368)T42.CB, (T0368)A56.CB) [> 4.4875 = 7.4793 < 9.7230] w=0.5408 to align # Constraint # added constraint: constraint((T0368)E64.CB, (T0368)A75.CB) [> 4.4751 = 7.4585 < 9.6960] w=0.5342 to align # Constraint # added constraint: constraint((T0368)V104.CB, (T0368)K126.CB) [> 3.2155 = 5.3591 < 6.9668] w=0.5315 to align # Constraint # added constraint: constraint((T0368)A56.CB, (T0368)F86.CB) [> 2.9232 = 4.8719 < 6.3335] w=0.5301 to align # Constraint # added constraint: constraint((T0368)F124.CB, (T0368)M144.CB) [> 3.7407 = 6.2344 < 8.1048] w=0.5297 to align # Constraint # added constraint: constraint((T0368)Y105.CB, (T0368)F124.CB) [> 4.1824 = 6.9706 < 9.0618] w=0.5166 to align # Constraint # added constraint: constraint((T0368)L14.CB, (T0368)F57.CB) [> 4.0619 = 6.7698 < 8.8008] w=0.5071 to align # Constraint # added constraint: constraint((T0368)A108.CB, (T0368)V127.CB) [> 4.0388 = 6.7314 < 8.7508] w=0.5065 to align # Constraint # added constraint: constraint((T0368)A108.CB, (T0368)M121.CB) [> 4.5697 = 7.6161 < 9.9009] w=0.5039 to align # Constraint # added constraint: constraint((T0368)L21.CB, (T0368)G61.CA) [> 4.3582 = 7.2636 < 9.4427] w=0.5026 to align # Constraint # added constraint: constraint((T0368)A63.CB, (T0368)L76.CB) [> 4.5868 = 7.6446 < 9.9380] w=0.4941 to align # Constraint # added constraint: constraint((T0368)L76.CB, (T0368)L111.CB) [> 4.1667 = 6.9445 < 9.0278] w=0.4798 to align # Constraint # added constraint: constraint((T0368)D73.CB, (T0368)L114.CB) [> 4.1802 = 6.9670 < 9.0571] w=0.4790 to align # Constraint # added constraint: constraint((T0368)A10.CB, (T0368)A36.CB) [> 3.0029 = 5.0049 < 6.5064] w=0.4243 to align # Constraint # added constraint: constraint((T0368)V128.CB, (T0368)K141.CB) [> 3.8728 = 6.4546 < 8.3910] w=0.4105 to align # Constraint # added constraint: constraint((T0368)Y11.CB, (T0368)A36.CB) [> 4.2098 = 7.0164 < 9.1213] w=0.3839 to align # Constraint # added constraint: constraint((T0368)F124.CB, (T0368)A148.CB) [> 3.7223 = 6.2038 < 8.0650] w=0.3809 to align # Constraint # added constraint: constraint((T0368)L21.CB, (T0368)E64.CB) [> 4.2227 = 7.0379 < 9.1493] w=0.3746 to align # Constraint # added constraint: constraint((T0368)A67.CB, (T0368)L109.CB) [> 3.8597 = 6.4329 < 8.3628] w=0.3737 to align # Constraint # added constraint: constraint((T0368)V104.CB, (T0368)M130.CB) [> 4.2056 = 7.0094 < 9.1122] w=0.3732 to align # Constraint # added constraint: constraint((T0368)L76.CB, (T0368)L114.CB) [> 4.1631 = 6.9385 < 9.0201] w=0.3719 to align # Constraint # added constraint: constraint((T0368)H59.CB, (T0368)A103.CB) [> 4.3693 = 7.2822 < 9.4669] w=0.3709 to align # Constraint # added constraint: constraint((T0368)A10.CB, (T0368)S40.CB) [> 3.2316 = 5.3860 < 7.0018] w=0.3585 to align # Constraint # added constraint: constraint((T0368)F124.CB, (T0368)K141.CB) [> 3.0320 = 5.0533 < 6.5693] w=0.3581 to align # Constraint # added constraint: constraint((T0368)M121.CB, (T0368)I152.CB) [> 4.0482 = 6.7470 < 8.7710] w=0.3434 to align # Constraint # added constraint: constraint((T0368)F57.CB, (T0368)A82.CB) [> 4.5392 = 7.5654 < 9.8350] w=0.3343 to align # Constraint # added constraint: constraint((T0368)A56.CB, (T0368)R89.CB) [> 4.0039 = 6.6732 < 8.6751] w=0.3297 to align # Constraint # added constraint: constraint((T0368)A56.CB, (T0368)L83.CB) [> 4.6598 = 7.7663 < 10.0961] w=0.3210 to align # Constraint # added constraint: constraint((T0368)I101.CB, (T0368)V127.CB) [> 3.1987 = 5.3312 < 6.9306] w=0.3187 to align # Constraint # added constraint: constraint((T0368)M121.CB, (T0368)M145.CB) [> 4.2927 = 7.1544 < 9.3008] w=0.3183 to align # Constraint # added constraint: constraint((T0368)V128.CB, (T0368)M145.CB) [> 3.8922 = 6.4870 < 8.4331] w=0.3141 to align # Constraint # added constraint: constraint((T0368)A108.CB, (T0368)M144.CB) [> 4.2453 = 7.0755 < 9.1981] w=0.2920 to align # Constraint # added constraint: constraint((T0368)I101.CB, (T0368)M130.CB) [> 3.1409 = 5.2348 < 6.8053] w=0.2919 to align # Constraint # added constraint: constraint((T0368)R89.CB, (T0368)V104.CB) [> 4.1765 = 6.9609 < 9.0491] w=0.2768 to align # Constraint # added constraint: constraint((T0368)F124.CB, (T0368)R151.CB) [> 3.4697 = 5.7828 < 7.5176] w=0.2732 to align # Constraint # added constraint: constraint((T0368)F72.CB, (T0368)L111.CB) [> 4.4120 = 7.3533 < 9.5593] w=0.2673 to align # Constraint # added constraint: constraint((T0368)G61.CA, (T0368)A82.CB) [> 4.7000 = 7.8334 < 10.1834] w=0.2669 to align # Constraint # added constraint: constraint((T0368)Y105.CB, (T0368)M144.CB) [> 3.6935 = 6.1558 < 8.0025] w=0.2652 to align # Constraint # added constraint: constraint((T0368)V128.CB, (T0368)M144.CB) [> 3.1180 = 5.1967 < 6.7557] w=0.2606 to align # Constraint # added constraint: constraint((T0368)A60.CB, (T0368)S102.CB) [> 3.5459 = 5.9098 < 7.6827] w=0.2542 to align # Constraint # added constraint: constraint((T0368)A56.CB, (T0368)A103.CB) [> 4.0594 = 6.7657 < 8.7954] w=0.2540 to align # Constraint # added constraint: constraint((T0368)A63.CB, (T0368)H77.CB) [> 4.5676 = 7.6127 < 9.8966] w=0.2532 to align # Constraint # added constraint: constraint((T0368)L83.CB, (T0368)W100.CB) [> 3.4732 = 5.7886 < 7.5252] w=0.2523 to align # Constraint # added constraint: constraint((T0368)M121.CB, (T0368)A148.CB) [> 3.5631 = 5.9385 < 7.7201] w=0.2516 to align # Constraint # added constraint: constraint((T0368)M121.CB, (T0368)M144.CB) [> 3.4010 = 5.6683 < 7.3688] w=0.2514 to align # Constraint # added constraint: constraint((T0368)M121.CB, (T0368)K141.CB) [> 4.0620 = 6.7700 < 8.8011] w=0.2514 to align # Constraint # added constraint: constraint((T0368)A75.CB, (T0368)R107.CB) [> 4.2651 = 7.1085 < 9.2411] w=0.2382 to align # Constraint # added constraint: constraint((T0368)A120.CB, (T0368)M144.CB) [> 2.9545 = 4.9242 < 6.4014] w=0.2381 to align # Constraint # added constraint: constraint((T0368)V7.CB, (T0368)I39.CB) [> 4.2535 = 7.0892 < 9.2160] w=0.2369 to align # Constraint # added constraint: constraint((T0368)A10.CB, (T0368)C58.CB) [> 4.6069 = 7.6782 < 9.9816] w=0.2272 to align # Constraint # added constraint: constraint((T0368)A56.CB, (T0368)W100.CB) [> 3.7946 = 6.3244 < 8.2217] w=0.2251 to align # Constraint # added constraint: constraint((T0368)V127.CB, (T0368)M144.CB) [> 3.2968 = 5.4946 < 7.1430] w=0.2220 to align # Constraint # added constraint: constraint((T0368)A56.CB, (T0368)K81.CB) [> 4.5702 = 7.6171 < 9.9022] w=0.2140 to align # Constraint # added constraint: constraint((T0368)F86.CB, (T0368)W100.CB) [> 2.8266 = 4.7111 < 6.1244] w=0.2138 to align # Constraint # added constraint: constraint((T0368)A82.CB, (T0368)W100.CB) [> 3.8091 = 6.3485 < 8.2531] w=0.2115 to align # Constraint # added constraint: constraint((T0368)I131.CB, (T0368)M144.CB) [> 2.9922 = 4.9870 < 6.4831] w=0.2054 to align # Constraint # added constraint: constraint((T0368)A36.CB, (T0368)L62.CB) [> 4.4370 = 7.3951 < 9.6136] w=0.2048 to align # Constraint # added constraint: constraint((T0368)A108.CB, (T0368)A148.CB) [> 4.3296 = 7.2160 < 9.3808] w=0.2007 to align # Constraint # added constraint: constraint((T0368)Y26.CB, (T0368)L66.CB) [> 4.5700 = 7.6168 < 9.9018] w=0.2005 to align # Constraint # added constraint: constraint((T0368)D112.CB, (T0368)V147.CB) [> 4.3401 = 7.2335 < 9.4035] w=0.2003 to align # Constraint # added constraint: constraint((T0368)S102.CB, (T0368)V127.CB) [> 4.0706 = 6.7843 < 8.8196] w=0.1984 to align # Constraint # added constraint: constraint((T0368)M121.CB, (T0368)R151.CB) [> 3.6465 = 6.0775 < 7.9008] w=0.1960 to align # Constraint # added constraint: constraint((T0368)K125.CB, (T0368)A148.CB) [> 3.4968 = 5.8280 < 7.5764] w=0.1937 to align # Constraint # added constraint: constraint((T0368)M43.CB, (T0368)C58.CB) [> 3.1431 = 5.2386 < 6.8102] w=0.1872 to align # Constraint # added constraint: constraint((T0368)A56.CB, (T0368)L99.CB) [> 3.5389 = 5.8982 < 7.6677] w=0.1854 to align # Constraint # added constraint: constraint((T0368)V128.CB, (T0368)R151.CB) [> 4.3983 = 7.3306 < 9.5298] w=0.1824 to align # Constraint # added constraint: constraint((T0368)R34.CB, (T0368)C58.CB) [> 4.6983 = 7.8304 < 10.1796] w=0.1738 to align # Constraint # added constraint: constraint((T0368)N87.CB, (T0368)W100.CB) [> 3.7854 = 6.3090 < 8.2017] w=0.1738 to align # Constraint # added constraint: constraint((T0368)M121.CB, (T0368)L155.CB) [> 3.2076 = 5.3461 < 6.9499] w=0.1712 to align # Constraint # added constraint: constraint((T0368)G61.CA, (T0368)S106.CB) [> 4.6578 = 7.7630 < 10.0919] w=0.1605 to align # Constraint # added constraint: constraint((T0368)V8.CB, (T0368)C58.CB) [> 4.3059 = 7.1765 < 9.3295] w=0.1559 to align # Constraint # added constraint: constraint((T0368)V8.CB, (T0368)F57.CB) [> 3.0066 = 5.0110 < 6.5142] w=0.1557 to align # Constraint # added constraint: constraint((T0368)F124.CB, (T0368)M145.CB) [> 3.0262 = 5.0436 < 6.5567] w=0.1471 to align # Constraint # added constraint: constraint((T0368)F86.CB, (T0368)L99.CB) [> 3.4328 = 5.7213 < 7.4377] w=0.1471 to align # Constraint # added constraint: constraint((T0368)L62.CB, (T0368)A75.CB) [> 4.3630 = 7.2716 < 9.4531] w=0.1469 to align # Constraint # added constraint: constraint((T0368)L14.CB, (T0368)D55.CB) [> 4.2195 = 7.0325 < 9.1422] w=0.1463 to align # Constraint # added constraint: constraint((T0368)S40.CB, (T0368)H51.CB) [> 3.4804 = 5.8007 < 7.5409] w=0.1447 to align # Constraint # added constraint: constraint((T0368)I101.CB, (T0368)I131.CB) [> 3.6745 = 6.1242 < 7.9615] w=0.1447 to align # Constraint # added constraint: constraint((T0368)E6.CB, (T0368)I39.CB) [> 3.1083 = 5.1805 < 6.7347] w=0.1436 to align # Constraint # added constraint: constraint((T0368)R107.CB, (T0368)F124.CB) [> 3.5209 = 5.8682 < 7.6287] w=0.1426 to align # Constraint # added constraint: constraint((T0368)M121.CB, (T0368)I149.CB) [> 4.1344 = 6.8907 < 8.9579] w=0.1338 to align # Constraint # added constraint: constraint((T0368)Y11.CB, (T0368)S40.CB) [> 4.5740 = 7.6234 < 9.9104] w=0.1338 to align # Constraint # added constraint: constraint((T0368)M43.CB, (T0368)Y85.CB) [> 4.4348 = 7.3913 < 9.6086] w=0.1338 to align # Constraint # added constraint: constraint((T0368)A82.CB, (T0368)L99.CB) [> 4.2771 = 7.1285 < 9.2670] w=0.1338 to align # Constraint # added constraint: constraint((T0368)A60.CB, (T0368)L99.CB) [> 3.7290 = 6.2150 < 8.0795] w=0.1338 to align # Constraint # added constraint: constraint((T0368)F57.CB, (T0368)L99.CB) [> 3.7073 = 6.1788 < 8.0325] w=0.1338 to align # Constraint # added constraint: constraint((T0368)V8.CB, (T0368)A60.CB) [> 4.4177 = 7.3628 < 9.5717] w=0.1291 to align # Constraint # added constraint: constraint((T0368)V8.CB, (T0368)G61.CA) [> 3.6173 = 6.0288 < 7.8374] w=0.1291 to align # Constraint # added constraint: constraint((T0368)E38.CB, (T0368)A82.CB) [> 4.5273 = 7.5455 < 9.8091] w=0.1290 to align # Constraint # added constraint: constraint((T0368)R70.CB, (T0368)L114.CB) [> 4.0783 = 6.7972 < 8.8363] w=0.1279 to align # Constraint # added constraint: constraint((T0368)M43.CB, (T0368)F57.CB) [> 3.4885 = 5.8141 < 7.5583] w=0.1204 to align # Constraint # added constraint: constraint((T0368)A10.CB, (T0368)H51.CB) [> 4.0081 = 6.6802 < 8.6842] w=0.1204 to align # Constraint # added constraint: constraint((T0368)F124.CB, (T0368)L155.CB) [> 4.0696 = 6.7826 < 8.8174] w=0.1187 to align # Constraint # added constraint: constraint((T0368)M121.CB, (T0368)G156.CA) [> 3.9348 = 6.5580 < 8.5254] w=0.1177 to align # Constraint # added constraint: constraint((T0368)H59.CB, (T0368)S106.CB) [> 3.6096 = 6.0159 < 7.8207] w=0.1164 to align # Constraint # added constraint: constraint((T0368)L12.CB, (T0368)A65.CB) [> 4.3364 = 7.2273 < 9.3955] w=0.1159 to align # Constraint # added constraint: constraint((T0368)A82.CB, (T0368)G97.CA) [> 4.0233 = 6.7056 < 8.7172] w=0.1158 to align # Constraint # added constraint: constraint((T0368)H59.CB, (T0368)W100.CB) [> 3.2146 = 5.3576 < 6.9649] w=0.1157 to align # Constraint # added constraint: constraint((T0368)S102.CB, (T0368)I131.CB) [> 3.6827 = 6.1379 < 7.9792] w=0.1157 to align # Constraint # added constraint: constraint((T0368)E129.CB, (T0368)A148.CB) [> 4.0702 = 6.7836 < 8.8187] w=0.1157 to align # Constraint # added constraint: constraint((T0368)L76.CB, (T0368)Y105.CB) [> 4.0988 = 6.8312 < 8.8806] w=0.1135 to align # Constraint # added constraint: constraint((T0368)R88.CB, (T0368)I101.CB) [> 4.4175 = 7.3625 < 9.5712] w=0.1071 to align # Constraint # added constraint: constraint((T0368)A60.CB, (T0368)W100.CB) [> 4.1178 = 6.8631 < 8.9220] w=0.1071 to align # Constraint # added constraint: constraint((T0368)A56.CB, (T0368)L92.CB) [> 3.4824 = 5.8040 < 7.5451] w=0.1070 to align # Constraint # added constraint: constraint((T0368)M43.CB, (T0368)A56.CB) [> 3.5765 = 5.9608 < 7.7490] w=0.1070 to align # Constraint # added constraint: constraint((T0368)F124.CB, (T0368)I152.CB) [> 3.1393 = 5.2321 < 6.8018] w=0.1070 to align # Constraint # added constraint: constraint((T0368)V7.CB, (T0368)S40.CB) [> 3.4598 = 5.7664 < 7.4963] w=0.1069 to align # Constraint # added constraint: constraint((T0368)L4.CB, (T0368)S40.CB) [> 3.4612 = 5.7686 < 7.4992] w=0.1067 to align # Constraint # added constraint: constraint((T0368)V7.CB, (T0368)A36.CB) [> 3.6765 = 6.1275 < 7.9657] w=0.1065 to align # Constraint # added constraint: constraint((T0368)F86.CB, (T0368)G97.CA) [> 3.5858 = 5.9763 < 7.7692] w=0.1062 to align # Constraint # added constraint: constraint((T0368)L14.CB, (T0368)F54.CB) [> 3.2611 = 5.4352 < 7.0657] w=0.1046 to align # Constraint # added constraint: constraint((T0368)L111.CB, (T0368)M144.CB) [> 4.3345 = 7.2242 < 9.3914] w=0.1044 to align # Constraint # added constraint: constraint((T0368)L69.CB, (T0368)A108.CB) [> 2.9290 = 4.8817 < 6.3462] w=0.1032 to align # Constraint # added constraint: constraint((T0368)A82.CB, (T0368)S102.CB) [> 4.5786 = 7.6311 < 9.9204] w=0.0937 to align # Constraint # added constraint: constraint((T0368)A120.CB, (T0368)L155.CB) [> 3.6356 = 6.0593 < 7.8770] w=0.0937 to align # Constraint # added constraint: constraint((T0368)G115.CA, (T0368)L155.CB) [> 4.7538 = 7.9230 < 10.2998] w=0.0937 to align # Constraint # added constraint: constraint((T0368)Y11.CB, (T0368)F54.CB) [> 3.1547 = 5.2579 < 6.8353] w=0.0937 to align # Constraint # added constraint: constraint((T0368)D80.CB, (T0368)A103.CB) [> 4.5950 = 7.6583 < 9.9558] w=0.0935 to align # Constraint # added constraint: constraint((T0368)A29.CB, (T0368)L69.CB) [> 4.6183 = 7.6972 < 10.0064] w=0.0933 to align # Constraint # added constraint: constraint((T0368)S40.CB, (T0368)F54.CB) [> 3.4413 = 5.7355 < 7.4561] w=0.0931 to align # Constraint # added constraint: constraint((T0368)S102.CB, (T0368)M130.CB) [> 3.8486 = 6.4143 < 8.3386] w=0.0913 to align # Constraint # added constraint: constraint((T0368)M121.CB, (T0368)A153.CB) [> 4.6458 = 7.7430 < 10.0659] w=0.0912 to align # Constraint # added constraint: constraint((T0368)H59.CB, (T0368)Y105.CB) [> 4.5629 = 7.6049 < 9.8863] w=0.0910 to align # Constraint # added constraint: constraint((T0368)S106.CB, (T0368)M121.CB) [> 4.6231 = 7.7052 < 10.0168] w=0.0907 to align # Constraint # added constraint: constraint((T0368)L69.CB, (T0368)L109.CB) [> 4.4704 = 7.4507 < 9.6859] w=0.0894 to align # Constraint # added constraint: constraint((T0368)V7.CB, (T0368)H51.CB) [> 3.7450 = 6.2417 < 8.1142] w=0.0803 to align # Constraint # added constraint: constraint((T0368)F57.CB, (T0368)L92.CB) [> 4.4640 = 7.4401 < 9.6721] w=0.0803 to align # Constraint # added constraint: constraint((T0368)Q18.CB, (T0368)G61.CA) [> 4.2483 = 7.0805 < 9.2046] w=0.0803 to align # Constraint # added constraint: constraint((T0368)L4.CB, (T0368)I39.CB) [> 3.2440 = 5.4066 < 7.0286] w=0.0799 to align # Constraint # added constraint: constraint((T0368)L83.CB, (T0368)I101.CB) [> 4.0132 = 6.6887 < 8.6953] w=0.0787 to align # Constraint # added constraint: constraint((T0368)L62.CB, (T0368)A82.CB) [> 4.1573 = 6.9288 < 9.0075] w=0.0783 to align # Constraint # added constraint: constraint((T0368)L99.CB, (T0368)I131.CB) [> 3.9063 = 6.5104 < 8.4636] w=0.0779 to align # Constraint # added constraint: constraint((T0368)A103.CB, (T0368)I131.CB) [> 3.9224 = 6.5374 < 8.4986] w=0.0779 to align # Constraint # added constraint: constraint((T0368)L21.CB, (T0368)F57.CB) [> 4.4843 = 7.4738 < 9.7160] w=0.0778 to align # Constraint # added constraint: constraint((T0368)H84.CB, (T0368)K126.CB) [> 4.6126 = 7.6876 < 9.9939] w=0.0778 to align # Constraint # added constraint: constraint((T0368)Y11.CB, (T0368)D55.CB) [> 4.7026 = 7.8377 < 10.1890] w=0.0669 to align # Constraint # added constraint: constraint((T0368)I101.CB, (T0368)M144.CB) [> 4.4631 = 7.4385 < 9.6701] w=0.0669 to align # Constraint # added constraint: constraint((T0368)S15.CB, (T0368)F57.CB) [> 3.8394 = 6.3990 < 8.3187] w=0.0669 to align # Constraint # added constraint: constraint((T0368)V8.CB, (T0368)A36.CB) [> 3.0630 = 5.1049 < 6.6364] w=0.0666 to align # Constraint # added constraint: constraint((T0368)L92.CB, (T0368)I101.CB) [> 3.5416 = 5.9027 < 7.6736] w=0.0664 to align # Constraint # added constraint: constraint((T0368)K5.CB, (T0368)F57.CB) [> 2.9217 = 4.8695 < 6.3304] w=0.0646 to align # Constraint # added constraint: constraint((T0368)F124.CB, (T0368)I149.CB) [> 3.9108 = 6.5180 < 8.4734] w=0.0535 to align # Constraint # added constraint: constraint((T0368)V8.CB, (T0368)F54.CB) [> 4.2623 = 7.1038 < 9.2350] w=0.0534 to align # Constraint # added constraint: constraint((T0368)L4.CB, (T0368)A36.CB) [> 3.1888 = 5.3146 < 6.9090] w=0.0533 to align # Constraint # added constraint: constraint((T0368)V104.CB, (T0368)M144.CB) [> 4.0148 = 6.6913 < 8.6987] w=0.0512 to align # Constraint # added constraint: constraint((T0368)M37.CB, (T0368)H51.CB) [> 3.4761 = 5.7935 < 7.5315] w=0.0512 to align # Constraint # added constraint: constraint((T0368)S40.CB, (T0368)G53.CA) [> 4.4483 = 7.4139 < 9.6381] w=0.0440 to align # Constraint # added constraint: constraint((T0368)V7.CB, (T0368)F54.CB) [> 4.3222 = 7.2037 < 9.3648] w=0.0401 to align # Constraint # added constraint: constraint((T0368)L4.CB, (T0368)A48.CB) [> 3.9685 = 6.6141 < 8.5983] w=0.0401 to align # Constraint # added constraint: constraint((T0368)E74.CB, (T0368)A110.CB) [> 4.6819 = 7.8031 < 10.1441] w=0.0401 to align # Constraint # added constraint: constraint((T0368)C33.CB, (T0368)H51.CB) [> 3.7815 = 6.3025 < 8.1932] w=0.0401 to align # Constraint # added constraint: constraint((T0368)F57.CB, (T0368)S102.CB) [> 4.7074 = 7.8457 < 10.1994] w=0.0401 to align # Constraint # added constraint: constraint((T0368)P44.CB, (T0368)A82.CB) [> 3.2974 = 5.4956 < 7.1443] w=0.0401 to align # Constraint # added constraint: constraint((T0368)A52.CB, (T0368)R88.CB) [> 4.6664 = 7.7774 < 10.1106] w=0.0400 to align # Constraint # added constraint: constraint((T0368)L92.CB, (T0368)R134.CB) [> 3.5464 = 5.9107 < 7.6839] w=0.0400 to align # Constraint # added constraint: constraint((T0368)F49.CB, (T0368)L62.CB) [> 4.3723 = 7.2872 < 9.4733] w=0.0399 to align # Constraint # added constraint: constraint((T0368)S15.CB, (T0368)Y26.CB) [> 4.4380 = 7.3966 < 9.6156] w=0.0397 to align # Constraint # added constraint: constraint((T0368)A110.CB, (T0368)L155.CB) [> 3.0877 = 5.1462 < 6.6901] w=0.0390 to align # Constraint # added constraint: constraint((T0368)H59.CB, (T0368)K98.CB) [> 4.7557 = 7.9262 < 10.3041] w=0.0389 to align # Constraint # added constraint: constraint((T0368)G97.CA, (T0368)M144.CB) [> 3.6253 = 6.0422 < 7.8548] w=0.0268 to align # Constraint # added constraint: constraint((T0368)V7.CB, (T0368)A48.CB) [> 3.2078 = 5.3464 < 6.9503] w=0.0268 to align # Constraint # added constraint: constraint((T0368)V7.CB, (T0368)M37.CB) [> 4.2799 = 7.1332 < 9.2731] w=0.0268 to align # Constraint # added constraint: constraint((T0368)L12.CB, (T0368)F54.CB) [> 3.9295 = 6.5492 < 8.5140] w=0.0268 to align # Constraint # added constraint: constraint((T0368)P44.CB, (T0368)C58.CB) [> 4.3716 = 7.2860 < 9.4717] w=0.0268 to align # Constraint # added constraint: constraint((T0368)A13.CB, (T0368)D50.CB) [> 3.1371 = 5.2284 < 6.7970] w=0.0268 to align # Constraint # added constraint: constraint((T0368)D112.CB, (T0368)I152.CB) [> 3.6682 = 6.1137 < 7.9478] w=0.0268 to align # Constraint # added constraint: constraint((T0368)A120.CB, (T0368)I152.CB) [> 2.8644 = 4.7741 < 6.2063] w=0.0268 to align # Constraint # added constraint: constraint((T0368)A10.CB, (T0368)D50.CB) [> 3.9743 = 6.6239 < 8.6110] w=0.0268 to align # Constraint # added constraint: constraint((T0368)Y11.CB, (T0368)F49.CB) [> 4.3940 = 7.3233 < 9.5203] w=0.0268 to align # Constraint # added constraint: constraint((T0368)A36.CB, (T0368)D50.CB) [> 3.6544 = 6.0906 < 7.9178] w=0.0268 to align # Constraint # added constraint: constraint((T0368)A48.CB, (T0368)Y85.CB) [> 4.1452 = 6.9087 < 8.9813] w=0.0268 to align # Constraint # added constraint: constraint((T0368)A48.CB, (T0368)R88.CB) [> 4.6554 = 7.7589 < 10.0866] w=0.0268 to align # Constraint # added constraint: constraint((T0368)F49.CB, (T0368)R89.CB) [> 4.3225 = 7.2041 < 9.3653] w=0.0268 to align # Constraint # added constraint: constraint((T0368)Q18.CB, (T0368)I152.CB) [> 3.6030 = 6.0051 < 7.8066] w=0.0267 to align # Constraint # added constraint: constraint((T0368)V22.CB, (T0368)I152.CB) [> 3.1611 = 5.2686 < 6.8491] w=0.0267 to align # Constraint # added constraint: constraint((T0368)L12.CB, (T0368)A36.CB) [> 3.7148 = 6.1913 < 8.0487] w=0.0267 to align # Constraint # added constraint: constraint((T0368)S40.CB, (T0368)F49.CB) [> 3.3807 = 5.6345 < 7.3249] w=0.0267 to align # Constraint # added constraint: constraint((T0368)P3.CB, (T0368)L12.CB) [> 3.3360 = 5.5599 < 7.2279] w=0.0266 to align # Constraint # added constraint: constraint((T0368)A103.CB, (T0368)F124.CB) [> 4.4712 = 7.4520 < 9.6876] w=0.0265 to align # Constraint # added constraint: constraint((T0368)E25.CB, (T0368)F57.CB) [> 4.1063 = 6.8438 < 8.8969] w=0.0265 to align # Constraint # added constraint: constraint((T0368)F54.CB, (T0368)K98.CB) [> 4.3612 = 7.2686 < 9.4492] w=0.0265 to align # Constraint # added constraint: constraint((T0368)G53.CA, (T0368)G97.CA) [> 4.5648 = 7.6080 < 9.8903] w=0.0265 to align # Constraint # added constraint: constraint((T0368)G53.CA, (T0368)A82.CB) [> 4.2375 = 7.0624 < 9.1812] w=0.0265 to align # Constraint # added constraint: constraint((T0368)A48.CB, (T0368)C58.CB) [> 2.7434 = 4.5723 < 5.9439] w=0.0265 to align # Constraint # added constraint: constraint((T0368)E47.CB, (T0368)S78.CB) [> 4.7374 = 7.8957 < 10.2644] w=0.0265 to align # Constraint # added constraint: constraint((T0368)E47.CB, (T0368)L66.CB) [> 4.6275 = 7.7125 < 10.0263] w=0.0265 to align # Constraint # added constraint: constraint((T0368)F72.CB, (T0368)M144.CB) [> 3.4030 = 5.6717 < 7.3732] w=0.0262 to align # Constraint # added constraint: constraint((T0368)A10.CB, (T0368)A65.CB) [> 4.1019 = 6.8365 < 8.8874] w=0.0232 to align # Constraint # added constraint: constraint((T0368)I39.CB, (T0368)A65.CB) [> 3.8266 = 6.3777 < 8.2910] w=0.0232 to align # Constraint # added constraint: constraint((T0368)S40.CB, (T0368)F57.CB) [> 4.3903 = 7.3172 < 9.5124] w=0.0174 to align # Constraint # added constraint: constraint((T0368)S40.CB, (T0368)A52.CB) [> 3.6159 = 6.0265 < 7.8344] w=0.0173 to align # Constraint # added constraint: constraint((T0368)P3.CB, (T0368)I39.CB) [> 3.9436 = 6.5726 < 8.5444] w=0.0134 to align # Constraint # added constraint: constraint((T0368)P3.CB, (T0368)E47.CB) [> 3.3770 = 5.6284 < 7.3169] w=0.0134 to align # Constraint # added constraint: constraint((T0368)K2.CB, (T0368)S40.CB) [> 3.5378 = 5.8963 < 7.6652] w=0.0134 to align # Constraint # added constraint: constraint((T0368)I101.CB, (T0368)I149.CB) [> 2.3097 = 3.8496 < 5.0044] w=0.0134 to align # Constraint # added constraint: constraint((T0368)Y11.CB, (T0368)G53.CA) [> 4.5588 = 7.5980 < 9.8773] w=0.0134 to align # Constraint # added constraint: constraint((T0368)L4.CB, (T0368)F49.CB) [> 2.1961 = 3.6601 < 4.7582] w=0.0133 to align # Constraint # added constraint: constraint((T0368)L4.CB, (T0368)G53.CA) [> 4.6260 = 7.7100 < 10.0230] w=0.0133 to align # Constraint # added constraint: constraint((T0368)S40.CB, (T0368)A82.CB) [> 4.4699 = 7.4498 < 9.6847] w=0.0133 to align # Constraint # added constraint: constraint((T0368)S71.CB, (T0368)M121.CB) [> 3.7131 = 6.1885 < 8.0450] w=0.0116 to align # Constraint # added constraint: constraint((T0368)G53.CA, (T0368)L111.CB) [> 3.9127 = 6.5212 < 8.4776] w=0.0027 to align # Constraint # added constraint: constraint((T0368)G9.CA, (T0368)E28.CB) [> 3.4634 = 5.7724 < 7.5041] w=0.0013 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0368/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0368/decoys/ # ReadConformPDB reading from PDB file tr368.gromacs0.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 134 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr368.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr368.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr368.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr368.with.ligand.renum.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 Skipped atom 129, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 131, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 333, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 334, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 335, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 336, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 357, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 358, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 359, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 360, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 625, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 626, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 627, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 628, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 Skipped atom 35, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 44, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 49, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 90, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 135, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 160, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 249, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 306, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 315, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 396, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 437, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 482, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 527, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 548, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 565, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 586, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 647, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 668, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 681, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 20 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 Skipped atom 129, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 131, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 345, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 346, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 347, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 348, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 369, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 370, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 371, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 372, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 637, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 638, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 639, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 640, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 174 in servers/nFOLD_TS2.pdb.gz # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 115 in servers/nFOLD_TS3.pdb.gz # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 138 in servers/nFOLD_TS4.pdb.gz # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/panther3_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation panther3_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0368 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 265 model score -0.4597 model score -0.4620 model score -0.4679 model score -0.4702 model score -0.4679 model score 1.1393 model score 0.9514 model score 0.7151 model score 1.0039 model score 0.3862 model score -0.0582 model score -0.0552 model score -0.2044 model score 0.3746 model score 0.3715 model score 0.1190 model score 0.0764 model score -0.0477 model score 0.2725 model score -0.0301 model score 0.3583 model score -0.0370 model score 0.4512 model score 1.4087 model score 1.3607 model score 0.8478 model score 1.0737 model score 1.2056 model score 0.9313 model score 0.8042 model score -0.3137 model score -0.3483 model score 0.3142 model score -0.2356 model score -0.1231 model score -0.2984 model score -0.2877 model score -0.3450 model score -0.1207 model score -0.4067 model score -0.1530 model score -0.3346 model score -0.1766 model score -0.0257 model score -0.2465 model score 1.2772 model score 1.2771 model score 1.2772 model score 1.2771 model score 1.2773 model score -0.2991 model score -0.2093 model score -0.1163 model score -0.1627 model score 0.1855 model score -0.0661 model score -0.4067 model score -0.2877 model score -0.2984 model score -0.3450 model score -0.1774 model score -0.1876 model score 0.8479 model score 1.1711 model score 1.0977 model score 1.2766 model score 1.2774 model score 1.2775 model score 1.2773 model score 1.2772 model score 1.2766 model score 1.2774 model score 1.2775 model score 1.2773 model score 1.2777 model score 2.1267 model score 2.3641 model score 2.2750 model score 1.9417 model score 2.0786 model score -0.2650 model score -0.3352 model score -0.2090 model score -0.3087 model score 0.6621 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.2475 model score 0.8282 model score 0.5768 model score 0.5610 model score -0.2605 model score 2.0243 model score 1.8927 model score 2.0480 model score 1.9770 model score -0.2879 model score -0.3108 model score -0.2362 model score -0.2837 model score -0.1369 model score -0.3270 model score -0.3141 model score -0.3141 model score 0.3628 model score 0.1186 model score -0.1263 model score 1.4273 model score 0.4286 model score -0.1294 model score -0.1754 model score -0.3948 model score 0.0215 model score -0.1825 model score 1.2771 model score 0.1411 model score 0.2125 model score 0.3795 model score -0.2397 model score -0.0379 model score 0.1597 model score 0.3795 model score 0.0053 model score 0.2125 model score 0.2698 model score -0.3731 model score -0.3750 model score -0.1267 model score -0.1887 model score -0.4873 model score 0.0339 model score 2.1974 model score 1.7000 model score 1.7666 model score 1.5692 model score 1.7476 model score 0.4206 model score 0.4109 model score 0.4117 model score 0.4044 model score -0.2400 model score -0.2623 model score 0.3958 model score -0.2118 model score -0.2355 model score -0.0197 model score -0.1944 model score -0.0890 model score -0.2161 model score -0.2145 model score 0.0280 model score -0.3802 model score -0.3083 model score -0.2969 model score -0.2964 model score -0.2967 model score -0.2969 model score -0.3803 model score -0.3511 model score -0.1272 model score -0.2161 model score -0.3436 model score -0.3543 model score -0.2501 model score -0.3261 model score -0.3128 model score -0.1754 model score -0.3029 model score -0.2822 model score -0.2831 model score -0.0852 model score -0.3553 model score -0.3541 model score -0.4006 model score -0.3749 model score -0.2694 model score -0.3961 model score -0.3436 model score -0.1114 model score -0.3803 model score -0.3996 model score -0.3511 model score -0.2572 model score -0.2764 model score 0.1711 model score -0.2253 model score -0.1966 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2773 model score 1.2772 model score 0.5458 model score 0.0049 model score -0.0663 model score -0.3052 model score -0.3331 model score 0.0339 model score -0.3702 model score -0.2501 model score 0.5867 model score 1.2771 model score -0.0439 model score -0.1523 model score -0.2275 model score -0.0405 model score -0.3957 model score 0.0120 model score 0.5776 model score -0.2341 model score 0.6899 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2773 model score 1.2771 model score -0.2597 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.4838 model score -0.4849 model score -0.4711 model score -0.4263 model score -0.4482 model score -0.1104 model score 0.0885 model score 1.2771 model score 1.2772 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.2266 model score -0.2622 model score -0.2112 model score 1.7708 model score 1.9515 model score -0.1288 model score -0.2341 model score -0.1314 model score -0.3000 model score -0.2134 model score -0.0861 model score -0.3065 model score -0.2772 model score -0.2512 model score -0.3417 model score -0.3532 model score -0.3028 model score 0.4133 model score 0.4308 model score 0.4018 model score 0.5962 model score 1.3112 model score 1.4014 model score -0.1128 weight: 0.9913 eval: -0.4597 min: -0.4873 max: 2.3641 weight: 0.9920 eval: -0.4620 min: -0.4873 max: 2.3641 weight: 0.9939 eval: -0.4679 min: -0.4873 max: 2.3641 weight: 0.9946 eval: -0.4702 min: -0.4873 max: 2.3641 weight: 0.9939 eval: -0.4679 min: -0.4873 max: 2.3641 weight: 0.4866 eval: 1.1393 min: -0.4873 max: 2.3641 weight: 0.5459 eval: 0.9514 min: -0.4873 max: 2.3641 weight: 0.6205 eval: 0.7151 min: -0.4873 max: 2.3641 weight: 0.5293 eval: 1.0039 min: -0.4873 max: 2.3641 weight: 0.7243 eval: 0.3862 min: -0.4873 max: 2.3641 weight: 0.8646 eval: -0.0582 min: -0.4873 max: 2.3641 weight: 0.8636 eval: -0.0552 min: -0.4873 max: 2.3641 weight: 0.9107 eval: -0.2044 min: -0.4873 max: 2.3641 weight: 0.7279 eval: 0.3746 min: -0.4873 max: 2.3641 weight: 0.7289 eval: 0.3715 min: -0.4873 max: 2.3641 weight: 0.8086 eval: 0.1190 min: -0.4873 max: 2.3641 weight: 0.8221 eval: 0.0764 min: -0.4873 max: 2.3641 weight: 0.8613 eval: -0.0477 min: -0.4873 max: 2.3641 weight: 0.7602 eval: 0.2725 min: -0.4873 max: 2.3641 weight: 0.8557 eval: -0.0301 min: -0.4873 max: 2.3641 weight: 0.7331 eval: 0.3583 min: -0.4873 max: 2.3641 weight: 0.8579 eval: -0.0370 min: -0.4873 max: 2.3641 weight: 0.7038 eval: 0.4512 min: -0.4873 max: 2.3641 weight: 0.4016 eval: 1.4087 min: -0.4873 max: 2.3641 weight: 0.4167 eval: 1.3607 min: -0.4873 max: 2.3641 weight: 0.5786 eval: 0.8478 min: -0.4873 max: 2.3641 weight: 0.5073 eval: 1.0737 min: -0.4873 max: 2.3641 weight: 0.4657 eval: 1.2056 min: -0.4873 max: 2.3641 weight: 0.5522 eval: 0.9313 min: -0.4873 max: 2.3641 weight: 0.5924 eval: 0.8042 min: -0.4873 max: 2.3641 weight: 0.9452 eval: -0.3137 min: -0.4873 max: 2.3641 weight: 0.9561 eval: -0.3483 min: -0.4873 max: 2.3641 weight: 0.7470 eval: 0.3142 min: -0.4873 max: 2.3641 weight: 0.9206 eval: -0.2356 min: -0.4873 max: 2.3641 weight: 0.8850 eval: -0.1231 min: -0.4873 max: 2.3641 weight: 0.9404 eval: -0.2984 min: -0.4873 max: 2.3641 weight: 0.9370 eval: -0.2877 min: -0.4873 max: 2.3641 weight: 0.9551 eval: -0.3450 min: -0.4873 max: 2.3641 weight: 0.8843 eval: -0.1207 min: -0.4873 max: 2.3641 weight: 0.9746 eval: -0.4067 min: -0.4873 max: 2.3641 weight: 0.8945 eval: -0.1530 min: -0.4873 max: 2.3641 weight: 0.9518 eval: -0.3346 min: -0.4873 max: 2.3641 weight: 0.9019 eval: -0.1766 min: -0.4873 max: 2.3641 weight: 0.8543 eval: -0.0257 min: -0.4873 max: 2.3641 weight: 0.9240 eval: -0.2465 min: -0.4873 max: 2.3641 weight: 0.4431 eval: 1.2772 min: -0.4873 max: 2.3641 weight: 0.4431 eval: 1.2771 min: -0.4873 max: 2.3641 weight: 0.4430 eval: 1.2772 min: -0.4873 max: 2.3641 weight: 0.4431 eval: 1.2771 min: -0.4873 max: 2.3641 weight: 0.4430 eval: 1.2773 min: -0.4873 max: 2.3641 weight: 0.9406 eval: -0.2991 min: -0.4873 max: 2.3641 weight: 0.9123 eval: -0.2093 min: -0.4873 max: 2.3641 weight: 0.8829 eval: -0.1163 min: -0.4873 max: 2.3641 weight: 0.8975 eval: -0.1627 min: -0.4873 max: 2.3641 weight: 0.7876 eval: 0.1855 min: -0.4873 max: 2.3641 weight: 0.8670 eval: -0.0661 min: -0.4873 max: 2.3641 weight: 0.9746 eval: -0.4067 min: -0.4873 max: 2.3641 weight: 0.9370 eval: -0.2877 min: -0.4873 max: 2.3641 weight: 0.9404 eval: -0.2984 min: -0.4873 max: 2.3641 weight: 0.9551 eval: -0.3450 min: -0.4873 max: 2.3641 weight: 0.9022 eval: -0.1774 min: -0.4873 max: 2.3641 weight: 0.9054 eval: -0.1876 min: -0.4873 max: 2.3641 weight: 0.5786 eval: 0.8479 min: -0.4873 max: 2.3641 weight: 0.4765 eval: 1.1711 min: -0.4873 max: 2.3641 weight: 0.4997 eval: 1.0977 min: -0.4873 max: 2.3641 weight: 0.4433 eval: 1.2766 min: -0.4873 max: 2.3641 weight: 0.4430 eval: 1.2774 min: -0.4873 max: 2.3641 weight: 0.4430 eval: 1.2775 min: -0.4873 max: 2.3641 weight: 0.4430 eval: 1.2773 min: -0.4873 max: 2.3641 weight: 0.4431 eval: 1.2772 min: -0.4873 max: 2.3641 weight: 0.4433 eval: 1.2766 min: -0.4873 max: 2.3641 weight: 0.4430 eval: 1.2774 min: -0.4873 max: 2.3641 weight: 0.4430 eval: 1.2775 min: -0.4873 max: 2.3641 weight: 0.4430 eval: 1.2773 min: -0.4873 max: 2.3641 weight: 0.4429 eval: 1.2777 min: -0.4873 max: 2.3641 weight: 0.1749 eval: 2.1267 min: -0.4873 max: 2.3641 weight: 0.1000 eval: 2.3641 min: -0.4873 max: 2.3641 weight: 0.1281 eval: 2.2750 min: -0.4873 max: 2.3641 weight: 0.2333 eval: 1.9417 min: -0.4873 max: 2.3641 weight: 0.1901 eval: 2.0786 min: -0.4873 max: 2.3641 weight: 0.9298 eval: -0.2650 min: -0.4873 max: 2.3641 weight: 0.9520 eval: -0.3352 min: -0.4873 max: 2.3641 weight: 0.9122 eval: -0.2090 min: -0.4873 max: 2.3641 weight: 0.9436 eval: -0.3087 min: -0.4873 max: 2.3641 weight: 0.6372 eval: 0.6621 min: -0.4873 max: 2.3641 weight: 0.4431 eval: 1.2771 min: -0.4873 max: 2.3641 weight: 0.4431 eval: 1.2771 min: -0.4873 max: 2.3641 weight: 0.4431 eval: 1.2771 min: -0.4873 max: 2.3641 weight: 0.4431 eval: 1.2771 min: -0.4873 max: 2.3641 weight: 0.4431 eval: 1.2771 min: -0.4873 max: 2.3641 weight: 0.7681 eval: 0.2475 min: -0.4873 max: 2.3641 weight: 0.5848 eval: 0.8282 min: -0.4873 max: 2.3641 weight: 0.6641 eval: 0.5768 min: -0.4873 max: 2.3641 weight: 0.6691 eval: 0.5610 min: -0.4873 max: 2.3641 weight: 0.9284 eval: -0.2605 min: -0.4873 max: 2.3641 weight: 0.2073 eval: 2.0243 min: -0.4873 max: 2.3641 weight: 0.2488 eval: 1.8927 min: -0.4873 max: 2.3641 weight: 0.1998 eval: 2.0480 min: -0.4873 max: 2.3641 weight: 0.2222 eval: 1.9770 min: -0.4873 max: 2.3641 weight: 0.9371 eval: -0.2879 min: -0.4873 max: 2.3641 weight: 0.9443 eval: -0.3108 min: -0.4873 max: 2.3641 weight: 0.9208 eval: -0.2362 min: -0.4873 max: 2.3641 weight: 0.9357 eval: -0.2837 min: -0.4873 max: 2.3641 weight: 0.8894 eval: -0.1369 min: -0.4873 max: 2.3641 weight: 0.9494 eval: -0.3270 min: -0.4873 max: 2.3641 weight: 0.9453 eval: -0.3141 min: -0.4873 max: 2.3641 weight: 0.9453 eval: -0.3141 min: -0.4873 max: 2.3641 weight: 0.7317 eval: 0.3628 min: -0.4873 max: 2.3641 weight: 0.8088 eval: 0.1186 min: -0.4873 max: 2.3641 weight: 0.8861 eval: -0.1263 min: -0.4873 max: 2.3641 weight: 0.3957 eval: 1.4273 min: -0.4873 max: 2.3641 weight: 0.7109 eval: 0.4286 min: -0.4873 max: 2.3641 weight: 0.8870 eval: -0.1294 min: -0.4873 max: 2.3641 weight: 0.9016 eval: -0.1754 min: -0.4873 max: 2.3641 weight: 0.9708 eval: -0.3948 min: -0.4873 max: 2.3641 weight: 0.8394 eval: 0.0215 min: -0.4873 max: 2.3641 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Adding 6306 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -309.1158, CN propb: -309.1158 weights: 0.3246 constraints: 345 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 345 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 345 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 5961 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 5961 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 6306 # command: