# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0365/ # command:# Making conformation for sequence T0365 numbered 1 through 226 Created new target T0365 from T0365.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0365/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0365//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0365/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0365//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0365/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0365/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0365/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ofcX/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ofcX expands to /projects/compbio/data/pdb/1ofc.pdb.gz 1ofcX:Skipped atom 744, because occupancy 0.5 <= existing 0.500 in 1ofcX Skipped atom 746, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 748, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 750, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 752, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 754, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 756, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 934, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 936, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 938, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 940, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 942, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1428, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1430, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1432, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1434, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1436, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1438, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1440, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1729, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1731, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1733, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1735, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1812, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1814, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1816, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1818, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1820, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1822, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1824, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1849, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1851, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1853, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1855, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1857, because occupancy 0.500 <= existing 0.500 in 1ofcX Skipped atom 1859, because occupancy 0.500 <= existing 0.500 in 1ofcX # T0365 read from 1ofcX/merged-good-all-a2m # 1ofcX read from 1ofcX/merged-good-all-a2m # adding 1ofcX to template set # found chain 1ofcX in template set Warning: unaligning (T0365)Q115 because of BadResidue code BAD_PEPTIDE in next template residue (1ofcX)N901 Warning: unaligning (T0365)A116 because of BadResidue code BAD_PEPTIDE at template residue (1ofcX)N901 T0365 3 :VNSILGVFAKSPIKPLQEHMDKVYD 1ofcX 820 :IDNIAKDVEGKTPEEVIEYNAVFWE # choosing archetypes in rotamer library T0365 42 :GNWDDA 1ofcX 850 :QDIERI T0365 51 :RKQISLAEKQGDSLKR 1ofcX 856 :MGQIERGEGKIQRRLS T0365 92 :QDKIANKAKD 1ofcX 872 :IKKALDQKMS T0365 109 :R 1ofcX 882 :R T0365 110 :QLLIP 1ofcX 889 :QLRLQ T0365 117 :LQV 1ofcX 902 :YTE T0365 120 :PFIAYLQRCIDA 1ofcX 906 :EDRFLVCMLHKL T0365 132 :VGLAQQVINE 1ofcX 925 :YEELRAAIRA T0365 149 :G 1ofcX 935 :S T0365 150 :FRGR 1ofcX 938 :FRFD T0365 154 :EVDFVAKMINELDII 1ofcX 948 :TALELQRRCNTLITL T0365 169 :EEDTDDLQIQ 1ofcX 964 :ERENIELEEK Number of specific fragments extracted= 13 number of extra gaps= 1 total=13 Number of alignments=1 # 1ofcX read from 1ofcX/merged-good-all-a2m # found chain 1ofcX in template set Warning: unaligning (T0365)L7 because of BadResidue code BAD_PEPTIDE at template residue (1ofcX)A716 Warning: unaligning (T0365)L72 because of BadResidue code BAD_PEPTIDE in next template residue (1ofcX)S794 Warning: unaligning (T0365)P73 because of BadResidue code BAD_PEPTIDE at template residue (1ofcX)S794 Warning: unaligning (T0365)S188 because of BadResidue code BAD_PEPTIDE in next template residue (1ofcX)N901 Warning: unaligning (T0365)E189 because of BadResidue code BAD_PEPTIDE at template residue (1ofcX)N901 T0365 8 :GVFAKS 1ofcX 717 :PRPPKQ T0365 14 :PIKP 1ofcX 730 :FFPP T0365 28 :CASLLVPFFEATI 1ofcX 735 :LFELLDQEIYYFR T0365 45 :DDAVQIRKQIS 1ofcX 766 :KVQREEQRKID T0365 62 :DSLKREIRLT 1ofcX 783 :EEEIQEKENL T0365 74 :SGL 1ofcX 795 :QGF T0365 78 :MPVERTDLLELLTQQDK 1ofcX 798 :TAWTKRDFNQFIKANEK T0365 109 :RQLLIPQAL 1ofcX 815 :YGRDDIDNI T0365 118 :QVPFIAYLQRCIDAV 1ofcX 832 :PEEVIEYNAVFWERC T0365 150 :F 1ofcX 849 :L T0365 153 :REVDFVA 1ofcX 850 :QDIERIM T0365 163 :NELDIIEEDTDDLQI 1ofcX 857 :GQIERGEGKIQRRLS T0365 178 :QLRRQLFAL 1ofcX 874 :KALDQKMSR T0365 190 :LNPVDVMFLYKT 1ofcX 902 :YTEIEDRFLVCM T0365 202 :IEWVGGLAD 1ofcX 925 :YEELRAAIR T0365 211 :LAERVGSRLELMLA 1ofcX 951 :ELQRRCNTLITLIE Number of specific fragments extracted= 16 number of extra gaps= 3 total=29 Number of alignments=2 # 1ofcX read from 1ofcX/merged-good-all-a2m # found chain 1ofcX in template set Warning: unaligning (T0365)G42 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ofcX)Y752 Warning: unaligning (T0365)L72 because of BadResidue code BAD_PEPTIDE in next template residue (1ofcX)S794 Warning: unaligning (T0365)P73 because of BadResidue code BAD_PEPTIDE at template residue (1ofcX)S794 Warning: unaligning (T0365)S188 because of BadResidue code BAD_PEPTIDE in next template residue (1ofcX)N901 Warning: unaligning (T0365)E189 because of BadResidue code BAD_PEPTIDE at template residue (1ofcX)N901 T0365 2 :PVNSILGVFAKSPIKPLQEHMDK 1ofcX 723 :PIVQDFQFFPPRLFELLDQEIYY T0365 37 :EATIT 1ofcX 746 :FRKTV T0365 45 :DDAVQIRKQIS 1ofcX 766 :KVQREEQRKID T0365 62 :DSLKREIRLT 1ofcX 783 :EEEIQEKENL T0365 74 :SGL 1ofcX 795 :QGF T0365 78 :MPVERTDLLELLTQQDK 1ofcX 798 :TAWTKRDFNQFIKANEK T0365 100 :KDISG 1ofcX 821 :DNIAK T0365 110 :QLL 1ofcX 826 :DVE T0365 113 :IPQA 1ofcX 830 :KTPE T0365 120 :PFIAYLQRCIDA 1ofcX 834 :EVIEYNAVFWER T0365 153 :REVDFVA 1ofcX 850 :QDIERIM T0365 163 :NELDIIEEDTDDL 1ofcX 857 :GQIERGEGKIQRR T0365 176 :QIQLRRQLFALE 1ofcX 872 :IKKALDQKMSRY T0365 190 :LNPVDVMFLYKT 1ofcX 902 :YTEIEDRFLVCM T0365 202 :IEWVGGLADL 1ofcX 925 :YEELRAAIRA T0365 212 :AERVGSRLELMLAR 1ofcX 952 :LQRRCNTLITLIER Number of specific fragments extracted= 16 number of extra gaps= 3 total=45 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ohuA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ohuA expands to /projects/compbio/data/pdb/1ohu.pdb.gz 1ohuA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0365 read from 1ohuA/merged-good-all-a2m # 1ohuA read from 1ohuA/merged-good-all-a2m # adding 1ohuA to template set # found chain 1ohuA in template set Warning: unaligning (T0365)S74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ohuA)P165 Warning: unaligning (T0365)P79 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ohuA)P165 T0365 10 :FAKSPIK 1ohuA 105 :LPSGVQP T0365 28 :CASLLVPFFEATITGNWDDAVQIRKQI 1ohuA 112 :EHEMMRVMGTIFEKKHAENFETFSEQL T0365 61 :GDSLKREIRLTLP 1ohuA 145 :SFSLYQDVVRTVG T0365 80 :VERTDLLELLT 1ohuA 166 :MSYGRLIGLIS T0365 102 :ISGRVIGRQLL 1ohuA 177 :FGGFVAAKMME T0365 114 :PQALQVPFIAYLQRCI 1ohuA 188 :SVELQGQVRNLFVYTS T0365 133 :GLAQQVIN 1ohuA 204 :LFIKTRIR T0365 142 :LDDL 1ohuA 214 :WKEH T0365 152 :GREVDFVAKMINELDIIEEDTD 1ohuA 218 :NRSWDDFMTLGKQMKEDYERAE Number of specific fragments extracted= 9 number of extra gaps= 0 total=54 Number of alignments=4 # 1ohuA read from 1ohuA/merged-good-all-a2m # found chain 1ohuA in template set Warning: unaligning (T0365)S74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ohuA)P165 Warning: unaligning (T0365)P79 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ohuA)P165 T0365 8 :GVFAKSPIK 1ohuA 103 :PGLPSGVQP T0365 28 :CASLLVPFFEATITGNWDDAVQIRKQI 1ohuA 112 :EHEMMRVMGTIFEKKHAENFETFSEQL T0365 62 :DSLKREIRLTLP 1ohuA 146 :FSLYQDVVRTVG T0365 80 :VERTDLLELLTQQDKIANKA 1ohuA 166 :MSYGRLIGLISFGGFVAAKM T0365 109 :RQL 1ohuA 186 :MES T0365 115 :QALQVPFIAYLQRCID 1ohuA 189 :VELQGQVRNLFVYTSL T0365 134 :LAQQVIN 1ohuA 205 :FIKTRIR T0365 142 :LDDL 1ohuA 214 :WKEH T0365 152 :GREVDFVAKMINELDIIEEDTD 1ohuA 218 :NRSWDDFMTLGKQMKEDYERAE Number of specific fragments extracted= 9 number of extra gaps= 0 total=63 Number of alignments=5 # 1ohuA read from 1ohuA/merged-good-all-a2m # found chain 1ohuA in template set Warning: unaligning (T0365)S74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ohuA)P165 Warning: unaligning (T0365)P79 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ohuA)P165 T0365 11 :AKSPIKP 1ohuA 106 :PSGVQPE T0365 29 :ASLLVPFFEATITGNWDDAVQIRKQI 1ohuA 113 :HEMMRVMGTIFEKKHAENFETFSEQL T0365 62 :DSLKREIRLTLP 1ohuA 146 :FSLYQDVVRTVG T0365 80 :VERTDLLELLTQQD 1ohuA 166 :MSYGRLIGLISFGG T0365 101 :DISGRVIGR 1ohuA 180 :FVAAKMMES T0365 113 :IPQALQVPFIAYLQR 1ohuA 190 :ELQGQVRNLFVYTSL T0365 134 :LAQQVIN 1ohuA 205 :FIKTRIR T0365 141 :EL 1ohuA 216 :EH T0365 152 :GREVDFVAKMINELDIIEEDTD 1ohuA 218 :NRSWDDFMTLGKQMKEDYERAE Number of specific fragments extracted= 9 number of extra gaps= 0 total=72 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1z72A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1z72A expands to /projects/compbio/data/pdb/1z72.pdb.gz 1z72A:Skipped atom 11, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 13, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 15, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 17, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 19, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 21, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 23, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 25, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 55, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 57, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 59, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 61, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 63, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 65, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 67, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 69, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 71, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 84, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 86, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 88, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 90, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 92, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 94, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 96, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 98, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 143, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 145, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 147, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 149, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 151, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 153, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 155, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 157, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 159, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 161, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 163, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 165, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 167, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 169, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 171, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 188, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 190, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 192, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 194, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 196, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 198, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 200, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 202, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 204, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 302, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 304, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 306, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 308, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 310, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 312, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 314, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 316, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 318, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 372, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 374, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 376, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 378, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 380, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 382, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 384, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 386, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 388, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 398, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 400, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 402, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 404, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 406, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 408, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 410, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 412, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 414, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 431, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 433, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 435, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 437, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 439, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 441, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 443, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 445, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 447, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 561, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 563, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 565, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 567, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 569, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 577, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 1z72A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 661, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 663, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 665, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 667, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 669, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 671, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 673, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 675, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 677, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 746, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 748, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 750, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 752, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 754, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 756, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 758, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 760, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 762, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 951, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 953, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 955, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 957, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 959, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 961, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 963, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 965, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 967, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1067, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1069, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1071, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1073, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1075, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1077, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1079, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1081, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1083, because occupancy 0.500 <= existing 0.500 in 1z72A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1342, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1344, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1346, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1348, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1350, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1352, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1384, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1386, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1388, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1390, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1392, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1394, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1396, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1398, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1407, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1409, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1411, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1413, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1415, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1417, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1419, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1421, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1423, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1432, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1434, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1436, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1438, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1440, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1442, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1444, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1446, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1448, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1450, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1452, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1454, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1511, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1513, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1515, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1517, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1519, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1521, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1523, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1525, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1723, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1725, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1727, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1729, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1731, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1733, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1735, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1737, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1739, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1741, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1743, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1745, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1747, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1749, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1751, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1753, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1755, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1757, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1759, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1761, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1763, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1765, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1767, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1769, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1771, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1773, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1775, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1777, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1779, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1781, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1783, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1785, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1787, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1789, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1791, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1793, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1802, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1804, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1806, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1808, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1810, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1812, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1814, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1816, because occupancy 0.500 <= existing 0.500 in 1z72A Skipped atom 1818, because occupancy 0.500 <= existing 0.500 in 1z72A # T0365 read from 1z72A/merged-good-all-a2m # 1z72A read from 1z72A/merged-good-all-a2m # adding 1z72A to template set # found chain 1z72A in template set Warning: unaligning (T0365)E147 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z72A)R195 Warning: unaligning (T0365)G149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z72A)R195 T0365 10 :FAKS 1z72A 38 :FAGT T0365 14 :PIKPLQEH 1z72A 43 :ENKVLKDY T0365 22 :MDKVYDCASLLVPFF 1z72A 58 :FDAFLSMLGACVAHA T0365 42 :GNWDDAVQIRKQISLAEKQGDSLKREIRLTLP 1z72A 73 :DKLESKLRFAKQLGFLEADEDGYFQKAFKELK T0365 80 :VERTDLLELLTQQDKIAN 1z72A 114 :TLHPVTKAFQDLMYSAVA T0365 98 :KAKDISGRVIG 1z72A 135 :YAHLLVMLVIA T0365 110 :QLLIPQ 1z72A 156 :DLALPE T0365 118 :QVPFIAYLQ 1z72A 162 :VYIHSEWIN T0365 131 :AVGLAQQVINELDDLL 1z72A 177 :FAEWVQFLVDELNRVG T0365 153 :REVDFVAKMINELDIIE 1z72A 196 :EDLTELQQRWNQAVALE Number of specific fragments extracted= 10 number of extra gaps= 0 total=82 Number of alignments=7 # 1z72A read from 1z72A/merged-good-all-a2m # found chain 1z72A in template set Warning: unaligning (T0365)E147 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1z72A)R195 Warning: unaligning (T0365)G149 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1z72A)R195 T0365 14 :PIKPLQEHMDKVYDCASLLVPFFEATIT 1z72A 43 :ENKVLKDYLIQDYHFFDAFLSMLGACVA T0365 42 :GNWDDAVQIRKQISLAEKQGDSLKREIRLTLP 1z72A 73 :DKLESKLRFAKQLGFLEADEDGYFQKAFKELK T0365 80 :VERTDLLELLTQQDKIAN 1z72A 114 :TLHPVTKAFQDLMYSAVA T0365 101 :DISGRVIG 1z72A 138 :LLVMLVIA T0365 110 :QLLIPQ 1z72A 156 :DLALPE T0365 119 :VPFIAYLQ 1z72A 163 :YIHSEWIN T0365 131 :AVGLAQQVINELDDLL 1z72A 177 :FAEWVQFLVDELNRVG T0365 153 :REVDFVAKMINELDIIE 1z72A 196 :EDLTELQQRWNQAVALE Number of specific fragments extracted= 8 number of extra gaps= 0 total=90 Number of alignments=8 # 1z72A read from 1z72A/merged-good-all-a2m # found chain 1z72A in template set T0365 35 :FFEATITGNWDDAVQIR 1z72A 13 :TVGELLKSSQKDWQAAI T0365 63 :SLKREIRLT 1z72A 32 :RFVKELFAG T0365 79 :PVERTDLLELLTQQDKIANKAKDISGRVIGRQ 1z72A 41 :TIENKVLKDYLIQDYHFFDAFLSMLGACVAHA T0365 113 :IPQALQVPFIAYLQRCIDAVGLAQ 1z72A 73 :DKLESKLRFAKQLGFLEADEDGYF T0365 137 :QVINE 1z72A 98 :KAFKE T0365 148 :AGFRGREV 1z72A 103 :LKVAENDY T0365 156 :DF 1z72A 117 :PV T0365 169 :EEDTDDLQIQLRRQ 1z72A 119 :TKAFQDLMYSAVAS T0365 188 :S 1z72A 133 :S T0365 191 :NPVDVMFLYKTI 1z72A 134 :DYAHLLVMLVIA T0365 203 :EWVG 1z72A 167 :EWIN T0365 207 :GLADLAERVGSRLELM 1z72A 176 :FFAEWVQFLVDELNRV Number of specific fragments extracted= 12 number of extra gaps= 0 total=102 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ouvA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ouvA expands to /projects/compbio/data/pdb/1ouv.pdb.gz 1ouvA:# T0365 read from 1ouvA/merged-good-all-a2m # 1ouvA read from 1ouvA/merged-good-all-a2m # adding 1ouvA to template set # found chain 1ouvA in template set T0365 11 :AKSPIKPLQEHMDKVYDCASL 1ouvA 74 :GQGVEKNLKKAASFYAKACDL T0365 32 :LVPFFEATITG 1ouvA 100 :CHLLGNLYYSG T0365 76 :LFMPVERTDLLELLTQQDKI 1ouvA 111 :QGVSQNTNKALQYYSKACDL T0365 100 :KDISGRVIGR 1ouvA 134 :EGCASLGGIY T0365 110 :QLLIPQALQVPFIA 1ouvA 145 :DGKVVTRDFKKAVE T0365 179 :LRRQLFAL 1ouvA 159 :YFTKACDL T0365 188 :S 1ouvA 167 :N T0365 191 :NPVDVMFLYKTI 1ouvA 168 :DGDGCTILGSLY T0365 205 :VGGLADLAERVGS 1ouvA 189 :LKKALASYDKACD Number of specific fragments extracted= 9 number of extra gaps= 0 total=111 Number of alignments=10 # 1ouvA read from 1ouvA/merged-good-all-a2m # found chain 1ouvA in template set T0365 11 :AKSPIKPLQEHMDKVYDCASL 1ouvA 74 :GQGVEKNLKKAASFYAKACDL T0365 32 :LVPFFEATI 1ouvA 100 :CHLLGNLYY T0365 74 :SGLFMPVERTDLLELLTQQDKI 1ouvA 109 :SGQGVSQNTNKALQYYSKACDL T0365 100 :KDISGRVIGR 1ouvA 134 :EGCASLGGIY T0365 110 :QLLIPQALQVPFIAYLQRCI 1ouvA 145 :DGKVVTRDFKKAVEYFTKAC T0365 130 :DAVGLAQQVINE 1ouvA 191 :KALASYDKACDL T0365 142 :LDDL 1ouvA 211 :AGNM T0365 146 :LEAGFRGREVDFVAKMINELDIIE 1ouvA 216 :HHGEGATKNFKEALARYSKACELE Number of specific fragments extracted= 8 number of extra gaps= 0 total=119 Number of alignments=11 # 1ouvA read from 1ouvA/merged-good-all-a2m # found chain 1ouvA in template set Warning: unaligning (T0365)S13 because first residue in template chain is (1ouvA)D28 T0365 14 :PIKPLQEHMD 1ouvA 29 :PKELVGLGAK T0365 38 :ATITGNWDDAVQIRKQISL 1ouvA 39 :SYKEKDFTQAKKYFEKACD T0365 81 :ERTDLLELLTQ 1ouvA 60 :ENSGCFNLGVL T0365 105 :RVIG 1ouvA 71 :YYQG T0365 112 :LIPQALQVPFIAYLQRCID 1ouvA 75 :QGVEKNLKKAASFYAKACD T0365 131 :AV 1ouvA 100 :CH T0365 138 :VINEL 1ouvA 102 :LLGNL T0365 145 :LLEAGFRGREVDFVAKMINELDI 1ouvA 107 :YYSGQGVSQNTNKALQYYSKACD T0365 173 :DDLQIQLRRQLFALE 1ouvA 153 :FKKAVEYFTKACDLN T0365 191 :NPVDVMFLYKTI 1ouvA 168 :DGDGCTILGSLY T0365 205 :VGGLADLAERVGS 1ouvA 189 :LKKALASYDKACD Number of specific fragments extracted= 11 number of extra gaps= 0 total=130 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vljA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0365 read from 1vljA/merged-good-all-a2m # 1vljA read from 1vljA/merged-good-all-a2m # found chain 1vljA in training set T0365 11 :AKSPIKP 1vljA 206 :DGSSPEI T0365 21 :HMDKVYDCASLLVPFFEATI 1vljA 213 :SNEIAEGTIRTIMKMTERLI T0365 41 :TGNWDDAVQIR 1vljA 235 :PDDYEARANLA T0365 66 :REIRLTLPS 1vljA 246 :WSATIALNG T0365 75 :GLFMPVE 1vljA 259 :GRRGGEW T0365 84 :DLLELLTQQDKIAN 1vljA 266 :ACHRIEHSLSALYD T0365 100 :KDISGRVIGRQLL 1vljA 283 :GAGLAIVFPAWMK T0365 113 :IPQALQVPFIAYLQRCI 1vljA 297 :VYRKNPAQFERFAKKIF T0365 133 :GLAQQVINELDDLLEA 1vljA 321 :ELILKGIEAFKNWLKK T0365 149 :GFRGREVDFVAKM 1vljA 347 :GIPEEDIDKIVDN T0365 176 :QIQLRRQLFALESEL 1vljA 360 :VMLLVEKNLKPKGAS T0365 191 :NP 1vljA 382 :ER T0365 203 :EWVGGLADL 1vljA 384 :EDVREILKL Number of specific fragments extracted= 13 number of extra gaps= 0 total=143 Number of alignments=13 # 1vljA read from 1vljA/merged-good-all-a2m # found chain 1vljA in training set T0365 21 :HMDKVYDCASLLVPFFEATI 1vljA 213 :SNEIAEGTIRTIMKMTERLI T0365 41 :TGNWDDAVQIRK 1vljA 235 :PDDYEARANLAW T0365 67 :EIRL 1vljA 247 :SATI T0365 71 :TLPSGLFMPVE 1vljA 255 :TMAVGRRGGEW T0365 84 :DLLELLTQQDKIAN 1vljA 266 :ACHRIEHSLSALYD T0365 98 :KAKDISGRVIGRQL 1vljA 285 :GLAIVFPAWMKYVY T0365 115 :QALQVPFIAYLQRCI 1vljA 299 :RKNPAQFERFAKKIF T0365 133 :GLAQQVINELDDLLEA 1vljA 321 :ELILKGIEAFKNWLKK T0365 149 :GFRGREVDFVAKMI 1vljA 347 :GIPEEDIDKIVDNV T0365 177 :IQLRRQLFALESE 1vljA 361 :MLLVEKNLKPKGA T0365 190 :LNPVDV 1vljA 381 :LEREDV T0365 199 :YKTIEW 1vljA 387 :REILKL Number of specific fragments extracted= 12 number of extra gaps= 0 total=155 Number of alignments=14 # 1vljA read from 1vljA/merged-good-all-a2m # found chain 1vljA in training set T0365 21 :HMDKVYDCASLLVPFFEATI 1vljA 213 :SNEIAEGTIRTIMKMTERLI T0365 41 :TGNWDDAVQIRKQ 1vljA 235 :PDDYEARANLAWS T0365 68 :IRLTLPSGL 1vljA 248 :ATIALNGTM T0365 84 :DLLELLTQQDKIA 1vljA 266 :ACHRIEHSLSALY T0365 97 :NKAKDISGRVIGRQLLIPQALQVPFIAYLQ 1vljA 284 :AGLAIVFPAWMKYVYRKNPAQFERFAKKIF T0365 127 :RCIDAVGLAQQVINEL 1vljA 322 :LILKGIEAFKNWLKKV T0365 148 :AGFRGREVDFVAKM 1vljA 346 :AGIPEEDIDKIVDN T0365 176 :QIQLRRQLFALES 1vljA 360 :VMLLVEKNLKPKG T0365 189 :ELNPVD 1vljA 380 :VLERED T0365 198 :LYKTIE 1vljA 386 :VREILK Number of specific fragments extracted= 10 number of extra gaps= 0 total=165 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kgnA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kgnA expands to /projects/compbio/data/pdb/1kgn.pdb.gz 1kgnA:# T0365 read from 1kgnA/merged-good-all-a2m # 1kgnA read from 1kgnA/merged-good-all-a2m # adding 1kgnA to template set # found chain 1kgnA in template set T0365 9 :VFAKSPIKPLQEHMDKVYDCASLLVPFFEATIT 1kgnA 88 :LLPDAETMHEEAVYTNIAFMESVHAKSYSNIFM T0365 42 :GNWD 1kgnA 123 :ASTP T0365 50 :IRKQISLAEKQG 1kgnA 127 :QINEAFRWSEEN T0365 83 :TDLLELLTQQDKIAN 1kgnA 139 :ENLQRKAKIIMSYYN T0365 99 :A 1kgnA 167 :L T0365 102 :ISGRVIGRQLLIP 1kgnA 173 :YSGFYLPMYLSSR T0365 116 :ALQVPFIAYLQRCIDAVGLAQQVINE 1kgnA 186 :AKLTNTADIIRLIIRDESVHGYYIGY T0365 145 :LLEAGFRGREVDFVAKMINELDIIEEDTDDLQIQLRRQLFALES 1kgnA 212 :KYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLG T0365 191 :NPVDVMFLYKTI 1kgnA 256 :WTEDVKRFLRYN T0365 209 :A 1kgnA 268 :A Number of specific fragments extracted= 10 number of extra gaps= 0 total=175 Number of alignments=16 # 1kgnA read from 1kgnA/merged-good-all-a2m # found chain 1kgnA in template set T0365 8 :GVFAKSPIKPLQEHMDKVYDCASLLVPFFEATIT 1kgnA 87 :SLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFM T0365 42 :GNWD 1kgnA 123 :ASTP T0365 50 :IRKQISLAEKQGDSLKREI 1kgnA 127 :QINEAFRWSEENENLQRKA T0365 83 :TDLLELLT 1kgnA 146 :KIIMSYYN T0365 96 :ANKAKDISGRVIGR 1kgnA 158 :LKKKVASTLLESFL T0365 110 :QL 1kgnA 183 :SS T0365 115 :QALQVPFIAYLQRCIDAVGLAQQVI 1kgnA 185 :RAKLTNTADIIRLIIRDESVHGYYI T0365 143 :DDLLEAGFRGREVDFVAKMINELDIIEEDTDDLQIQLRRQLFALES 1kgnA 210 :GYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLG T0365 191 :NPVDVMFLYKT 1kgnA 256 :WTEDVKRFLRY T0365 208 :LADLA 1kgnA 267 :NANKA Number of specific fragments extracted= 10 number of extra gaps= 0 total=185 Number of alignments=17 # 1kgnA read from 1kgnA/merged-good-all-a2m # found chain 1kgnA in template set T0365 16 :KPLQEHMDKVYDCASLLVPFFEATIT 1kgnA 95 :MHEEAVYTNIAFMESVHAKSYSNIFM T0365 43 :NWD 1kgnA 124 :STP T0365 50 :IRKQISLAEKQ 1kgnA 127 :QINEAFRWSEE T0365 82 :RTDLLELLTQQDKIAN 1kgnA 138 :NENLQRKAKIIMSYYN T0365 98 :KAKDISGRVIG 1kgnA 157 :PLKKKVASTLL T0365 119 :VPFIAYLQRCIDAVGLAQQVINE 1kgnA 189 :TNTADIIRLIIRDESVHGYYIGY T0365 145 :LLEAGFRGREVDFVAKMINELDIIEEDTDDLQIQLRRQLFALES 1kgnA 212 :KYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLG T0365 191 :NPVDVMFLYKTI 1kgnA 256 :WTEDVKRFLRYN T0365 209 :ADL 1kgnA 268 :ANK Number of specific fragments extracted= 9 number of extra gaps= 0 total=194 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1sumB/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1sumB expands to /projects/compbio/data/pdb/1sum.pdb.gz 1sumB:# T0365 read from 1sumB/merged-good-all-a2m # 1sumB read from 1sumB/merged-good-all-a2m # adding 1sumB to template set # found chain 1sumB in template set T0365 16 :KPLQEHMDKVYDCASLLVPFFEATI 1sumB 7 :EKVEEFKKGVLKAGWFIEKMFRNSI T0365 41 :TGNWDDAVQIRKQ 1sumB 36 :ERNESLAREVIAD T0365 54 :ISLAEKQGDSLKREIRLTLP 1sumB 52 :VDQMEVEIQEKAMEVLGLFS T0365 79 :PVER 1sumB 72 :PIGK T0365 83 :TDLLELLTQQDKIANKAKDISGRVI 1sumB 81 :TAGIRVAELIENIADKCHDIAKNVL T0365 108 :GRQLLIPQAL 1sumB 107 :LMEEPPLKPL T0365 119 :VPFIAYLQRCIDAVGLAQQVIN 1sumB 117 :EDIPAMANQTSEMLKFALRMFA T0365 152 :GREVDFVAK 1sumB 139 :DVNVEKSFE T0365 165 :LDIIEEDTDDLQIQLRRQLFAL 1sumB 148 :VCRMDSKVDDLYEKVREELLLY T0365 187 :ESELNPVDVMFLYKTIEWVGGLADLAERVGSRLELMLAR 1sumB 172 :ESPKYVKRALLLLEIAGNIEIIADYATNIVEVSVYMVQG Number of specific fragments extracted= 10 number of extra gaps= 0 total=204 Number of alignments=19 # 1sumB read from 1sumB/merged-good-all-a2m # found chain 1sumB in template set T0365 15 :IKPLQEHMDKVYDCASLLVPFFEATI 1sumB 6 :NEKVEEFKKGVLKAGWFIEKMFRNSI T0365 41 :TGNWDDAVQIRK 1sumB 36 :ERNESLAREVIA T0365 53 :QISLAEKQGDSLKREIRLTLP 1sumB 51 :VVDQMEVEIQEKAMEVLGLFS T0365 79 :PVERT 1sumB 72 :PIGKP T0365 86 :LELLTQQDKIANKAKDISGRVI 1sumB 84 :IRVAELIENIADKCHDIAKNVL T0365 108 :GRQLLIPQALQ 1sumB 107 :LMEEPPLKPLE T0365 120 :PFIAYLQRCIDAVGLAQQVI 1sumB 118 :DIPAMANQTSEMLKFALRMF T0365 151 :RGREVDFVAKMINELDIIEEDTDDLQIQLRRQLFALES 1sumB 138 :ADVNVEKSFEVCRMDSKVDDLYEKVREELLLYMMESPK T0365 191 :NPVDVMFLYKTIEWVGGLADLAERVGSRLELMLAR 1sumB 176 :YVKRALLLLEIAGNIEIIADYATNIVEVSVYMVQG Number of specific fragments extracted= 9 number of extra gaps= 0 total=213 Number of alignments=20 # 1sumB read from 1sumB/merged-good-all-a2m # found chain 1sumB in template set Warning: unaligning (T0365)P14 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1sumB)L5 T0365 15 :IKPLQEHMDKVYDCASLLVPFFEATI 1sumB 6 :NEKVEEFKKGVLKAGWFIEKMFRNSI T0365 41 :TGNWDDAVQIRKQ 1sumB 36 :ERNESLAREVIAD T0365 54 :ISLAEKQGDSLKREIRLTLP 1sumB 52 :VDQMEVEIQEKAMEVLGLFS T0365 83 :TDLLELLTQQDKIANKAKDISGRVI 1sumB 81 :TAGIRVAELIENIADKCHDIAKNVL T0365 108 :GRQLLIPQAL 1sumB 107 :LMEEPPLKPL T0365 120 :PFIAYLQRCIDAVGLAQQVIN 1sumB 118 :DIPAMANQTSEMLKFALRMFA T0365 152 :GREVDFVAKMI 1sumB 139 :DVNVEKSFEVC T0365 167 :IIEEDTDDLQIQLRRQLFALESE 1sumB 150 :RMDSKVDDLYEKVREELLLYMME T0365 191 :N 1sumB 173 :S T0365 192 :PVDVMFLYKTIEWVGGLADLAERVGSRLELML 1sumB 177 :VKRALLLLEIAGNIEIIADYATNIVEVSVYMV Number of specific fragments extracted= 10 number of extra gaps= 1 total=223 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vctA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vctA expands to /projects/compbio/data/pdb/1vct.pdb.gz 1vctA:Skipped atom 136, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 138, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 555, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 557, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 559, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 858, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 860, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 862, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 864, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 866, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 868, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 870, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 872, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 874, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 876, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 878, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 880, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 882, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 884, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 886, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 888, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 890, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 892, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 894, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 896, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 898, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 900, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1027, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1036, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1038, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1040, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1042, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1044, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1046, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1048, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1050, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1052, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1054, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1056, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1058, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1060, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1062, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1064, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1066, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1068, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1070, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1072, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1074, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1076, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1078, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1080, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1082, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1084, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1086, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1088, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1090, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1092, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1094, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1096, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1098, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1100, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1102, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1104, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1106, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1108, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1110, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1112, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1114, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1116, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1118, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1120, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1122, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1124, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1126, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1128, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1130, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1132, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1134, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1136, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1138, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1140, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1142, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1144, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1146, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1148, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1150, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1152, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1154, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1156, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1158, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1160, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1162, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1164, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1166, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1168, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1170, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1172, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1174, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1176, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1178, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1180, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1182, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1184, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1186, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1188, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1190, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1192, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1194, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1196, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1198, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1200, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1202, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1204, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1206, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1208, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1210, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1212, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1346, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1348, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1350, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1352, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1354, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1356, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1358, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1360, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1362, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1364, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1366, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1368, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1370, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1372, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1374, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1376, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1378, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1380, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1382, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1384, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1386, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1388, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1390, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1392, because occupancy 0.500 <= existing 0.500 in 1vctA Skipped atom 1394, because occupancy 0.500 <= existing 0.500 in 1vctA # T0365 read from 1vctA/merged-good-all-a2m # 1vctA read from 1vctA/merged-good-all-a2m # adding 1vctA to template set # found chain 1vctA in template set T0365 13 :SPIK 1vctA 10 :EPKS T0365 18 :LQEHMDKVYDCASLLVPFFEATI 1vctA 14 :VKEIFIEMKDTVELMVDLAYASL T0365 41 :TGN 1vctA 38 :FGD T0365 48 :VQIRKQISLAEKQGDSLKREIRLT 1vctA 41 :KEIAEEVLELEERIDLLNYQLMMH T0365 83 :T 1vctA 73 :K T0365 84 :DLLELLTQQDKIANKAKDISGRVIG 1vctA 80 :TILQIANAIEDISNAAGDLAKMVLE T0365 110 :QLLIPQALQVPFIA 1vctA 105 :GVELHPVIKETILE Number of specific fragments extracted= 7 number of extra gaps= 0 total=230 Number of alignments=22 # 1vctA read from 1vctA/merged-good-all-a2m # found chain 1vctA in template set T0365 114 :PQALQVPFIAYLQRCIDAVGLAQ 1vctA 14 :VKEIFIEMKDTVELMVDLAYASL T0365 142 :LDD 1vctA 37 :LFG T0365 159 :AKMINELDIIEEDTDDLQIQLRRQLFALES 1vctA 41 :KEIAEEVLELEERIDLLNYQLMMHSVLAAR T0365 191 :NPVDVMFLYKTIEWVGGLADLAERVGSRLELMLAR 1vctA 71 :NVKEAEQVITILQIANAIEDISNAAGDLAKMVLEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=234 Number of alignments=23 # 1vctA read from 1vctA/merged-good-all-a2m # found chain 1vctA in template set T0365 87 :ELLTQQDKIANKAKDISGRVIGRQL 1vctA 16 :EIFIEMKDTVELMVDLAYASLLFGD T0365 115 :QALQVPFIAYLQRCIDAVGLAQQVINE 1vctA 41 :KEIAEEVLELEERIDLLNYQLMMHSVL T0365 148 :AGFRGREVDFVAKMINELDIIEEDTDDLQ 1vctA 68 :AARNVKEAEQVITILQIANAIEDISNAAG T0365 178 :QLRRQLFALES 1vctA 97 :DLAKMVLEGVE T0365 190 :LNPVDVMFLYK 1vctA 108 :LHPVIKETILE Number of specific fragments extracted= 5 number of extra gaps= 0 total=239 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1urvA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1urvA expands to /projects/compbio/data/pdb/1urv.pdb.gz 1urvA:# T0365 read from 1urvA/merged-good-all-a2m # 1urvA read from 1urvA/merged-good-all-a2m # adding 1urvA to template set # found chain 1urvA in template set Warning: unaligning (T0365)S103 because of BadResidue code BAD_PEPTIDE in next template residue (1urvA)L115 Warning: unaligning (T0365)G104 because of BadResidue code BAD_PEPTIDE at template residue (1urvA)L115 T0365 21 :HMDKVYDCASLLV 1urvA 23 :ERKAVQAMWARLY T0365 34 :PFFEATI 1urvA 44 :AILVRFF T0365 41 :TGNWDDAVQ 1urvA 66 :MEDPLEMER T0365 53 :QISLAEKQGDSLKREIRLTLP 1urvA 77 :QLRKHASRVMGALNTVVENLH T0365 81 :ERTDLLELLTQQDKI 1urvA 98 :DPDKVSSVLALVGKA T0365 102 :I 1urvA 113 :H T0365 110 :QLLI 1urvA 116 :KHKV T0365 116 :AL 1urvA 120 :EP T0365 119 :VPFIAYLQRCID 1urvA 122 :VYFKILSGVILE T0365 145 :LLEAGFRGREVDFVAKMINELDII 1urvA 134 :VVAEEFASDFPPETQRAWAKLRGL T0365 172 :TDDLQIQLRRQ 1urvA 158 :IYSHVTAAYKE Number of specific fragments extracted= 11 number of extra gaps= 1 total=250 Number of alignments=25 # 1urvA read from 1urvA/merged-good-all-a2m # found chain 1urvA in template set T0365 21 :HMDKVYDCASLLV 1urvA 23 :ERKAVQAMWARLY T0365 42 :GNWDDA 1urvA 36 :ANSEDV T0365 61 :GDSLKREIRLTLPSGLFM 1urvA 42 :GVAILVRFFVNFPSAKQY T0365 108 :GRQLLIPQALQV 1urvA 63 :FKHMEDPLEMER T0365 130 :DAVGLAQQVINELDDLLEAG 1urvA 77 :QLRKHASRVMGALNTVVENL T0365 153 :REVDFVAKMINELDIIE 1urvA 97 :HDPDKVSSVLALVGKAH T0365 172 :TDDLQIQLRRQLFAL 1urvA 124 :FKILSGVILEVVAEE T0365 187 :ESELNPVDVMFLYKTIEWVGGLADLAER 1urvA 140 :ASDFPPETQRAWAKLRGLIYSHVTAAYK Number of specific fragments extracted= 8 number of extra gaps= 0 total=258 Number of alignments=26 # 1urvA read from 1urvA/merged-good-all-a2m # found chain 1urvA in template set Warning: unaligning (T0365)S103 because of BadResidue code BAD_PEPTIDE in next template residue (1urvA)L115 Warning: unaligning (T0365)R109 because of BadResidue code BAD_PEPTIDE at template residue (1urvA)L115 T0365 12 :KSPIKPLQEHMDKVYD 1urvA 21 :EAERKAVQAMWARLYA T0365 28 :CASLLVPFFEA 1urvA 42 :GVAILVRFFVN T0365 42 :GNWDDAVQ 1urvA 67 :EDPLEMER T0365 53 :QISLAEKQGDSLKREIRLTLP 1urvA 77 :QLRKHASRVMGALNTVVENLH T0365 81 :ERTDLLELLTQQDKIA 1urvA 98 :DPDKVSSVLALVGKAH T0365 110 :QLLIPQALQVPFIAYL 1urvA 116 :KHKVEPVYFKILSGVI T0365 143 :DDLLEAGFRGREVDFVAKMINELDII 1urvA 132 :LEVVAEEFASDFPPETQRAWAKLRGL T0365 172 :TDDLQIQLRRQ 1urvA 158 :IYSHVTAAYKE Number of specific fragments extracted= 8 number of extra gaps= 1 total=266 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1n81A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1n81A expands to /projects/compbio/data/pdb/1n81.pdb.gz 1n81A:# T0365 read from 1n81A/merged-good-all-a2m # 1n81A read from 1n81A/merged-good-all-a2m # adding 1n81A to template set # found chain 1n81A in template set T0365 14 :PIKPLQEHMDKVYDCASLLVPFF 1n81A 31 :LSPRIRKVGDIEFHACSDYIYLL T0365 38 :ATITGNWDDAVQIR 1n81A 54 :MTLSKDPEKFNYAL T0365 81 :ERTDLLELLTQ 1n81A 69 :DRVSIRRYVRK T0365 92 :QDKIANKAKDISGRVI 1n81A 94 :QDNIVNRISDRLISYC T0365 109 :RQLLIPQALQVPFIAYLQRCIDAVGLAQQVINE 1n81A 110 :TDKEVTEDYIKKIDDYLWVEQRVIEEVSINVDH T0365 152 :GREVDFVAKMIN 1n81A 143 :AREVKEKKRIMN T0365 164 :ELDIIEEDTDDLQ 1n81A 158 :LIRMLFDTYEYVK T0365 210 :DLAERVGSRLELMLA 1n81A 177 :DQYKDAAARISQFLI Number of specific fragments extracted= 8 number of extra gaps= 0 total=274 Number of alignments=28 # 1n81A read from 1n81A/merged-good-all-a2m # found chain 1n81A in template set T0365 8 :GVFAKSPIKPLQEHMDKVYDCASLLVPFFEA 1n81A 25 :HETHAPLSPRIRKVGDIEFHACSDYIYLLMT T0365 40 :ITGNWDDAVQIR 1n81A 56 :LSKDPEKFNYAL T0365 59 :KQGDSLKREIRLTLPS 1n81A 71 :VSIRRYVRKNQNRYNY T0365 78 :MPVERT 1n81A 87 :FLIEER T0365 91 :QQDKIANKAKDISGRVI 1n81A 93 :VQDNIVNRISDRLISYC T0365 109 :RQLLIPQALQVPFIAYLQRCIDAVGLAQQVINE 1n81A 110 :TDKEVTEDYIKKIDDYLWVEQRVIEEVSINVDH T0365 152 :GREVDFVAKMIN 1n81A 143 :AREVKEKKRIMN T0365 173 :DDLQIQLRRQLFALESE 1n81A 156 :KKLIRMLFDTYEYVKDV T0365 191 :N 1n81A 173 :K T0365 210 :DLAERVGSRLELMLA 1n81A 177 :DQYKDAAARISQFLI Number of specific fragments extracted= 10 number of extra gaps= 0 total=284 Number of alignments=29 # 1n81A read from 1n81A/merged-good-all-a2m # found chain 1n81A in template set T0365 8 :GVFAKSPIKPLQEHMDKVYDCASLLVPFFEATI 1n81A 25 :HETHAPLSPRIRKVGDIEFHACSDYIYLLMTLS T0365 42 :GNWDDAVQIR 1n81A 58 :KDPEKFNYAL T0365 53 :QISLAEK 1n81A 72 :SIRRYVR T0365 67 :EIRLTLPSGL 1n81A 79 :KNQNRYNYFL T0365 80 :VERT 1n81A 89 :IEER T0365 91 :QQDKIANKAKDISGRV 1n81A 93 :VQDNIVNRISDRLISY T0365 108 :GRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINE 1n81A 109 :CTDKEVTEDYIKKIDDYLWVEQRVIEEVSINVDH T0365 152 :GREVDFVAKMIN 1n81A 143 :AREVKEKKRIMN T0365 173 :DDLQIQLRRQLFALES 1n81A 156 :KKLIRMLFDTYEYVKD T0365 190 :LN 1n81A 172 :VK T0365 210 :DLAERVGSRLELMLA 1n81A 177 :DQYKDAAARISQFLI Number of specific fragments extracted= 11 number of extra gaps= 0 total=295 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f6hX/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2f6hX expands to /projects/compbio/data/pdb/2f6h.pdb.gz 2f6hX:# T0365 read from 2f6hX/merged-good-all-a2m # 2f6hX read from 2f6hX/merged-good-all-a2m # adding 2f6hX to template set # found chain 2f6hX in template set Warning: unaligning (T0365)N43 because first residue in template chain is (2f6hX)N22 Warning: unaligning (T0365)R153 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2f6hX)M149 T0365 44 :WDDA 2f6hX 23 :ATQI T0365 51 :RKQISLAEKQGDSLKREIRLTLPSGLFMP 2f6hX 27 :NEELYRLLEDTEILNQEITEGLLKGFEVP T0365 80 :VERTDL 2f6hX 63 :LSKRDV T0365 86 :LELLTQQ 2f6hX 92 :ESFLAQV T0365 96 :ANKAKDISG 2f6hX 99 :LTTIQKVVT T0365 110 :QLL 2f6hX 108 :QLK T0365 114 :PQALQVPFIAYLQRCIDAVGLAQQVINELDD 2f6hX 111 :GNDLIPSGVFWLANVRELYSFVVFALNSILT T0365 154 :EVDFVAKMINELDIIEEDTDDLQIQLRRQ 2f6hX 150 :TDEEYKEYVSLVTELKDDFEALSYNIYNI T0365 197 :FLYKTIEWVGGLA 2f6hX 179 :WLKKLQKQLQKKA Number of specific fragments extracted= 9 number of extra gaps= 0 total=304 Number of alignments=31 # 2f6hX read from 2f6hX/merged-good-all-a2m # found chain 2f6hX in template set Warning: unaligning (T0365)R153 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2f6hX)M149 Warning: unaligning (T0365)E189 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2f6hX)E222 T0365 44 :WD 2f6hX 23 :AT T0365 49 :QIRKQISLAEKQGDSLKREIRLTLPSGLFMP 2f6hX 25 :QINEELYRLLEDTEILNQEITEGLLKGFEVP T0365 80 :VERTDL 2f6hX 63 :LSKRDV T0365 87 :ELLTQQDKIANKA 2f6hX 70 :YPARILIIVLSEM T0365 100 :KDISGRVIGR 2f6hX 92 :ESFLAQVLTT T0365 110 :QLLI 2f6hX 108 :QLKG T0365 115 :QALQVPFIAYLQRCIDAVGLAQQVINELDD 2f6hX 112 :NDLIPSGVFWLANVRELYSFVVFALNSILT T0365 154 :EVDFVAKMINELDIIEEDTDDLQIQLR 2f6hX 150 :TDEEYKEYVSLVTELKDDFEALSYNIY T0365 181 :RQLFAL 2f6hX 181 :KKLQKQ T0365 190 :LNPVD 2f6hX 223 :YTMDD T0365 198 :LYKTIEWVGGLADLA 2f6hX 228 :ILTFFNSIYWCMKSF T0365 213 :ERVGSRLELML 2f6hX 246 :NEVFHAVVTTL Number of specific fragments extracted= 12 number of extra gaps= 0 total=316 Number of alignments=32 # 2f6hX read from 2f6hX/merged-good-all-a2m # found chain 2f6hX in template set Warning: unaligning (T0365)F10 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2f6hX)M149 T0365 11 :AKSPIKPLQEHMDKVYDCAS 2f6hX 150 :TDEEYKEYVSLVTELKDDFE T0365 31 :LLVPFFEAT 2f6hX 171 :LSYNIYNIW T0365 47 :AVQIRKQISLA 2f6hX 180 :LKKLQKQLQKK T0365 68 :IRLTLPSG 2f6hX 191 :AINAVVIS T0365 80 :VERTDLLELLTQQDK 2f6hX 223 :YTMDDILTFFNSIYW T0365 95 :IANKAKDIS 2f6hX 256 :LLNYVDAIC T0365 104 :GRVIGRQLLIPQALQVPFIAYLQRCIDAVGL 2f6hX 266 :NELIMKRNFLSWKRGLQLNYNVTRLEEWCKT T0365 137 :QVINELDDLLEAGFR 2f6hX 307 :QHLIQTAKLLQVRKY T0365 154 :EVDFV 2f6hX 322 :TIEDI T0365 181 :RQLFALESELNPVDVMFLYK 2f6hX 327 :DILRGICYSLTPAQLQKLIS T0365 201 :TIEWVGGLADLAER 2f6hX 361 :ILRYVADIVKKEAA Number of specific fragments extracted= 11 number of extra gaps= 0 total=327 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1j1vA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1j1vA expands to /projects/compbio/data/pdb/1j1v.pdb.gz 1j1vA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0365 read from 1j1vA/merged-good-all-a2m # 1j1vA read from 1j1vA/merged-good-all-a2m # adding 1j1vA to template set # found chain 1j1vA in template set T0365 47 :AVQIRKQISLAEK 1j1vA 376 :IDNIQKTVAEYYK T0365 80 :VERTDLL 1j1vA 389 :IKVADLL T0365 115 :QALQVPFIAYLQRCIDAVGLA 1j1vA 397 :KRRSRSVARPRQMAMALAKEL T0365 139 :INELDDL 1j1vA 422 :LPEIGDA T0365 150 :FRGREVDFVAKMINELDIIEED 1j1vA 429 :FGGRDHTTVLHACRKIEQLREE T0365 172 :TDDLQIQLRRQL 1j1vA 454 :IKEDFSNLIRTL Number of specific fragments extracted= 6 number of extra gaps= 0 total=333 Number of alignments=34 # 1j1vA read from 1j1vA/merged-good-all-a2m # found chain 1j1vA in template set T0365 100 :KDISGRVIGR 1j1vA 377 :DNIQKTVAEY T0365 110 :QLLIPQALQVPFIAYLQRCIDA 1j1vA 396 :SKRRSRSVARPRQMAMALAKEL T0365 139 :INELDDL 1j1vA 422 :LPEIGDA T0365 150 :FRGREVDFVAKMINELDIIEED 1j1vA 429 :FGGRDHTTVLHACRKIEQLREE T0365 172 :TDDLQIQLRRQL 1j1vA 454 :IKEDFSNLIRTL Number of specific fragments extracted= 5 number of extra gaps= 0 total=338 Number of alignments=35 # 1j1vA read from 1j1vA/merged-good-all-a2m # found chain 1j1vA in template set T0365 47 :AVQIRKQISLA 1j1vA 376 :IDNIQKTVAEY T0365 80 :VERTDLL 1j1vA 389 :IKVADLL T0365 111 :LLIPQALQVPFIAYLQ 1j1vA 397 :KRRSRSVARPRQMAMA T0365 128 :CIDAV 1j1vA 413 :LAKEL T0365 139 :INELDDL 1j1vA 422 :LPEIGDA T0365 150 :FRGREVDFVAKMINELDIIEED 1j1vA 429 :FGGRDHTTVLHACRKIEQLREE T0365 172 :TDDLQIQLRRQL 1j1vA 454 :IKEDFSNLIRTL Number of specific fragments extracted= 7 number of extra gaps= 0 total=345 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1oq9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1oq9A expands to /projects/compbio/data/pdb/1oq9.pdb.gz 1oq9A:# T0365 read from 1oq9A/merged-good-all-a2m # 1oq9A read from 1oq9A/merged-good-all-a2m # adding 1oq9A to template set # found chain 1oq9A in template set T0365 42 :GNWDD 1oq9A 74 :DGFDE T0365 50 :IRKQISLAEKQ 1oq9A 79 :QVRELRERAKE T0365 61 :GDSLKREIRLTLPSGLFM 1oq9A 107 :ALPTYQTMLNTLDGVRDE T0365 79 :PV 1oq9A 129 :PT T0365 84 :DLLELLTQQDKIANKAKDISGRVIGR 1oq9A 131 :SWAIWTRAWTAEENRHGDLLNKYLYL T0365 110 :QLL 1oq9A 159 :RVD T0365 118 :QVPFIAYLQRCID 1oq9A 162 :MRQIEKTIQYLIG T0365 131 :AVGLAQQVINELDDLLEAG 1oq9A 195 :QERATFISHGNTARQAKEH T0365 154 :EVDFVAKMINELDIIEEDTDDLQIQLRRQLFALES 1oq9A 214 :GDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDP T0365 192 :PVDVMFLYKTIEW 1oq9A 249 :DGTVLAFADMMRK T0365 207 :GLADLAERVGSR 1oq9A 277 :NLFDHFSAVAQR Number of specific fragments extracted= 11 number of extra gaps= 0 total=356 Number of alignments=37 # 1oq9A read from 1oq9A/merged-good-all-a2m # found chain 1oq9A in template set T0365 2 :PVNSILGVFAKSPIKPLQEHMDKVYD 1oq9A 24 :VHVQVTHSMPPQKIEIFKSLDNWAEE T0365 42 :GNWDDAVQIRKQISLAEKQ 1oq9A 71 :PASDGFDEQVRELRERAKE T0365 61 :GDSLKREIRLTLPS 1oq9A 107 :ALPTYQTMLNTLDG T0365 75 :GLFMPVE 1oq9A 125 :TGASPTS T0365 82 :RTDLLELLTQQDKIAN 1oq9A 136 :TRAWTAEENRHGDLLN T0365 98 :KAKDISGRVIGRQLL 1oq9A 164 :QIEKTIQYLIGSGMD T0365 113 :IPQALQVPFIAYLQRCIDAVGLAQQVINELDD 1oq9A 181 :TENSPYLGFIYTSFQERATFISHGNTARQAKE T0365 153 :REVDFVAKMINELDIIEEDTDDLQIQLRRQLFALE 1oq9A 213 :HGDIKLAQICGTIAADEKRHETAYTKIVEKLFEID T0365 191 :NPVDVMFLYKTIEW 1oq9A 248 :PDGTVLAFADMMRK T0365 206 :GGLADLAERVGSR 1oq9A 276 :DNLFDHFSAVAQR Number of specific fragments extracted= 10 number of extra gaps= 0 total=366 Number of alignments=38 # 1oq9A read from 1oq9A/merged-good-all-a2m # found chain 1oq9A in template set T0365 63 :SLKREIRLTLPSGL 1oq9A 109 :PTYQTMLNTLDGVR T0365 84 :DLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRC 1oq9A 131 :SWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGS T0365 129 :IDAVGLAQQVIN 1oq9A 200 :FISHGNTARQAK T0365 152 :GREVDFVAKMINELDIIEEDTDDLQIQLRRQLFALE 1oq9A 212 :EHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEID T0365 191 :NPVDVMFLYKTIEW 1oq9A 248 :PDGTVLAFADMMRK T0365 207 :GLADLAERVG 1oq9A 277 :NLFDHFSAVA T0365 217 :SRLELML 1oq9A 299 :DILEFLV Number of specific fragments extracted= 7 number of extra gaps= 0 total=373 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1o5hA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1o5hA expands to /projects/compbio/data/pdb/1o5h.pdb.gz 1o5hA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0365 read from 1o5hA/merged-good-all-a2m # 1o5hA read from 1o5hA/merged-good-all-a2m # adding 1o5hA to template set # found chain 1o5hA in template set T0365 10 :FAKSPIKPLQEHMD 1o5hA 3 :VERLSLKEFCDMVA T0365 24 :KVYDCASLLVPFFEATITGN 1o5hA 31 :VGAMACALAEMVANFTRKKK T0365 44 :WDDAVQIRKQISLAEKQGDSLKREIRLT 1o5hA 56 :EPEMERIVEAMEEARLKLFDLAKKDMEA T0365 72 :LPSG 1o5hA 87 :VMKA T0365 81 :ERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDD 1o5hA 98 :LQNALKEAASVPMDVIRVMKDLAHELEKLAEFGNKNLASDTLNAADLCHAVFQVEKVNVLINLK T0365 149 :GF 1o5hA 162 :EI T0365 153 :REVDFVAKMINELDIIEEDTDDLQIQLRRQLFAL 1o5hA 164 :SDETFRKNMLEELEEQEAQIEGCYQRVKKMLEGI Number of specific fragments extracted= 7 number of extra gaps= 0 total=380 Number of alignments=40 # 1o5hA read from 1o5hA/merged-good-all-a2m # found chain 1o5hA in template set T0365 10 :FAKSPIKPLQEHMD 1o5hA 3 :VERLSLKEFCDMVA T0365 24 :KVYDCASLLVPFFEATITGN 1o5hA 31 :VGAMACALAEMVANFTRKKK T0365 44 :WDDAVQIRKQISLAEKQGDSLKR 1o5hA 56 :EPEMERIVEAMEEARLKLFDLAK T0365 67 :EIRLTLPSGLFM 1o5hA 82 :EAFEKVMKAYKS T0365 81 :E 1o5hA 94 :S T0365 82 :RTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDD 1o5hA 99 :QNALKEAASVPMDVIRVMKDLAHELEKLAEFGNKNLASDTLNAADLCHAVFQVEKVNVLINLK T0365 152 :G 1o5hA 162 :E T0365 153 :REVDFVAKMINELDIIEEDTDDLQIQLRRQLFALESE 1o5hA 164 :SDETFRKNMLEELEEQEAQIEGCYQRVKKMLEGIVWS Number of specific fragments extracted= 8 number of extra gaps= 0 total=388 Number of alignments=41 # 1o5hA read from 1o5hA/merged-good-all-a2m # found chain 1o5hA in template set Warning: unaligning (T0365)V9 because first residue in template chain is (1o5hA)E2 T0365 10 :FAKSPIKPLQEHMD 1o5hA 3 :VERLSLKEFCDMVA T0365 24 :KVYDCASLLVPFFEATITGN 1o5hA 31 :VGAMACALAEMVANFTRKKK T0365 44 :WDDAVQIRKQISLAEKQGDSLKREIRLT 1o5hA 56 :EPEMERIVEAMEEARLKLFDLAKKDMEA T0365 72 :LPSG 1o5hA 87 :VMKA T0365 82 :RTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDD 1o5hA 99 :QNALKEAASVPMDVIRVMKDLAHELEKLAEFGNKNLASDTLNAADLCHAVFQVEKVNVLINLK T0365 150 :F 1o5hA 163 :I T0365 153 :REVDFVAKMINELDIIEEDTDDLQIQLRRQL 1o5hA 164 :SDETFRKNMLEELEEQEAQIEGCYQRVKKML Number of specific fragments extracted= 7 number of extra gaps= 0 total=395 Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1h6pA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1h6pA expands to /projects/compbio/data/pdb/1h6p.pdb.gz 1h6pA:# T0365 read from 1h6pA/merged-good-all-a2m # 1h6pA read from 1h6pA/merged-good-all-a2m # adding 1h6pA to template set # found chain 1h6pA in template set Warning: unaligning (T0365)E81 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)V97 Warning: unaligning (T0365)D166 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)R192 T0365 19 :QEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLA 1h6pA 48 :LEEAVNRWVLKFYFHEALRAFRGSRYGDFRQIRDIMQAL T0365 78 :MPV 1h6pA 89 :RPL T0365 83 :TDLLELLTQQDKIAN 1h6pA 98 :SRLLRVMQCLSRIEE T0365 98 :KAKDISGRVIGRQLLI 1h6pA 128 :PLESAINVLEMIKTEF T0365 116 :ALQVPFIA 1h6pA 144 :TLTEAVVE T0365 124 :YLQRCIDAVGLAQ 1h6pA 153 :SRKLVKEAAVIIC T0365 142 :LD 1h6pA 166 :IK T0365 152 :GREVDFVAKMINEL 1h6pA 168 :NKEFEKASKILKKH T0365 180 :RRQLFALESE 1h6pA 195 :LLNIIREKNL T0365 190 :LNPVDVM 1h6pA 212 :FSYETFQ T0365 199 :YKTIEWVGG 1h6pA 219 :QKMLRFLES Number of specific fragments extracted= 11 number of extra gaps= 0 total=406 Number of alignments=43 # 1h6pA read from 1h6pA/merged-good-all-a2m # found chain 1h6pA in template set Warning: unaligning (T0365)E81 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)V97 Warning: unaligning (T0365)D166 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)R192 T0365 19 :QEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLA 1h6pA 48 :LEEAVNRWVLKFYFHEALRAFRGSRYGDFRQIRDIMQAL T0365 76 :LFMPV 1h6pA 87 :LVRPL T0365 84 :DLLELLTQQDKIAN 1h6pA 99 :RLLRVMQCLSRIEE T0365 98 :KAKDISGRVIGR 1h6pA 128 :PLESAINVLEMI T0365 110 :QLLIPQALQVPFIAYL 1h6pA 142 :EFTLTEAVVESSRKLV T0365 129 :IDAVGLAQ 1h6pA 158 :KEAAVIIC T0365 142 :LD 1h6pA 166 :IK T0365 152 :GREVDFVAKMINEL 1h6pA 168 :NKEFEKASKILKKH T0365 180 :RRQLFALESE 1h6pA 195 :LLNIIREKNL T0365 190 :LNPVDV 1h6pA 212 :FSYETF T0365 198 :LYKTIEWVGG 1h6pA 218 :QQKMLRFLES Number of specific fragments extracted= 11 number of extra gaps= 0 total=417 Number of alignments=44 # 1h6pA read from 1h6pA/merged-good-all-a2m # found chain 1h6pA in template set Warning: unaligning (T0365)F77 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1h6pA)V97 Warning: unaligning (T0365)R82 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1h6pA)V97 T0365 19 :QEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLA 1h6pA 48 :LEEAVNRWVLKFYFHEALRAFRGSRYGDFRQIRDIMQAL T0365 72 :LPSGL 1h6pA 87 :LVRPL T0365 83 :TDLLELLT 1h6pA 98 :SRLLRVMQ T0365 91 :QQDKIANKAKDISGR 1h6pA 128 :PLESAINVLEMIKTE T0365 111 :LLIPQALQVPFIAYLQRCIDAV 1h6pA 143 :FTLTEAVVESSRKLVKEAAVII T0365 138 :VINE 1h6pA 165 :CIKN T0365 153 :REVDFVAKMINEL 1h6pA 169 :KEFEKASKILKKH T0365 180 :RRQLFALESE 1h6pA 195 :LLNIIREKNL T0365 190 :LNPVDVM 1h6pA 212 :FSYETFQ T0365 199 :YKTIEWVGG 1h6pA 219 :QKMLRFLES Number of specific fragments extracted= 10 number of extra gaps= 0 total=427 Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wkbA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wkbA expands to /projects/compbio/data/pdb/1wkb.pdb.gz 1wkbA:# T0365 read from 1wkbA/merged-good-all-a2m # 1wkbA read from 1wkbA/merged-good-all-a2m # adding 1wkbA to template set # found chain 1wkbA in template set T0365 80 :VERTDLLELLTQQDKIANKAKDIS 1wkbA 689 :WRRKEVGKLRKQIERFYELISQFA T0365 108 :GRQLL 1wkbA 713 :EYEVK T0365 115 :Q 1wkbA 718 :G T0365 116 :ALQVPFIAYLQRCIDAVGLAQQVINEL 1wkbA 721 :ELKDIDRWMLHRLNKAIKETTNALEEF T0365 143 :DDLLEAGF 1wkbA 750 :RTAVQWAF T0365 170 :EDTDDLQIQLRRQL 1wkbA 758 :YSIMNDLRWYLRRT T0365 185 :A 1wkbA 772 :E T0365 188 :SELNPVDVMFLYKTIEWVGGLA 1wkbA 773 :GRDDEAKRYVLRTLADVWVRLM Number of specific fragments extracted= 8 number of extra gaps= 0 total=435 Number of alignments=46 # 1wkbA read from 1wkbA/merged-good-all-a2m # found chain 1wkbA in template set T0365 80 :VERTDLLELLTQQDKIANKAKDIS 1wkbA 689 :WRRKEVGKLRKQIERFYELISQFA T0365 108 :GRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELD 1wkbA 713 :EYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFR T0365 161 :MINELDIIEEDTDDLQIQLRRQ 1wkbA 749 :TRTAVQWAFYSIMNDLRWYLRR T0365 186 :LESELNPVDVMFLYKTIEWVGGLA 1wkbA 771 :TEGRDDEAKRYVLRTLADVWVRLM Number of specific fragments extracted= 4 number of extra gaps= 0 total=439 Number of alignments=47 # 1wkbA read from 1wkbA/merged-good-all-a2m # found chain 1wkbA in template set T0365 78 :MPVERTDLLELLTQQDKIANKAKDISG 1wkbA 687 :FDWRRKEVGKLRKQIERFYELISQFAE T0365 109 :RQLL 1wkbA 714 :YEVK T0365 113 :IPQALQVPFIAYLQRC 1wkbA 721 :ELKDIDRWMLHRLNKA T0365 132 :VGLAQQVINEL 1wkbA 737 :IKETTNALEEF T0365 153 :R 1wkbA 748 :R T0365 165 :LDIIEEDTDDLQIQLRRQLFALESELN 1wkbA 749 :TRTAVQWAFYSIMNDLRWYLRRTEGRD T0365 192 :PVDVMFLYKTIEWVGGLA 1wkbA 777 :EAKRYVLRTLADVWVRLM Number of specific fragments extracted= 7 number of extra gaps= 0 total=446 Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1t72A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0365/1t72A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0365/1t72A/merged-good-all-a2m.gz for input Trying 1t72A/merged-good-all-a2m Error: Couldn't open file 1t72A/merged-good-all-a2m or 1t72A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ku1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ku1A expands to /projects/compbio/data/pdb/1ku1.pdb.gz 1ku1A:# T0365 read from 1ku1A/merged-good-all-a2m # 1ku1A read from 1ku1A/merged-good-all-a2m # adding 1ku1A to template set # found chain 1ku1A in template set T0365 9 :VFAKS 1ku1A -8 :LVPRG T0365 14 :PIK 1ku1A -2 :HMD T0365 17 :PLQEHMDKVYD 1ku1A 562 :EFIECTNAFNE T0365 28 :CASLLVP 1ku1A 577 :GIPMLIE T0365 42 :GNWDDAVQIR 1ku1A 590 :DSDKDIAEFL T0365 58 :EKQGDSLK 1ku1A 608 :KKTIGLLL T0365 66 :R 1ku1A 629 :R T0365 67 :EIRLTLPSGLFMPVERTDLLELLTQQDK 1ku1A 640 :EAIRILLTKFRLPGESQQIERIIEAFSS T0365 98 :KAKD 1ku1A 668 :AYCE T0365 110 :QLLIPQALQ 1ku1A 672 :NQDYDPSKI T0365 119 :VPFIAYLQRCIDAVGLA 1ku1A 696 :DSVFILSYSIIMLNTDL T0365 149 :GFRGR 1ku1A 716 :QVKEH T0365 154 :EVDFVAK 1ku1A 722 :SFEDYSG T0365 174 :DLQIQLRRQLFA 1ku1A 742 :WYLDRVYCSIRD Number of specific fragments extracted= 14 number of extra gaps= 0 total=460 Number of alignments=49 # 1ku1A read from 1ku1A/merged-good-all-a2m # found chain 1ku1A in template set Warning: unaligning (T0365)G8 because first residue in template chain is (1ku1A)G-9 T0365 9 :VFAKS 1ku1A -8 :LVPRG T0365 14 :PIKP 1ku1A -2 :HMDR T0365 18 :LQEHMDKVYD 1ku1A 563 :FIECTNAFNE T0365 28 :CASLLVP 1ku1A 577 :GIPMLIE T0365 42 :GNWDDAVQI 1ku1A 590 :DSDKDIAEF T0365 51 :RKQISLA 1ku1A 608 :KKTIGLL T0365 59 :KQGDSLKR 1ku1A 622 :SLLNEYIR T0365 67 :EIRLTLPSGLFMPVERTDLLELLTQQDKIA 1ku1A 640 :EAIRILLTKFRLPGESQQIERIIEAFSSAY T0365 108 :GRQLLIPQA 1ku1A 670 :CENQDYDPS T0365 118 :QVPFIAYLQRCIDAVGLAQ 1ku1A 695 :ADSVFILSYSIIMLNTDLH T0365 152 :G 1ku1A 716 :Q T0365 153 :REVDFVAK 1ku1A 721 :MSFEDYSG T0365 174 :DLQIQLRRQLFA 1ku1A 742 :WYLDRVYCSIRD T0365 188 :SE 1ku1A 754 :KE Number of specific fragments extracted= 14 number of extra gaps= 0 total=474 Number of alignments=50 # 1ku1A read from 1ku1A/merged-good-all-a2m # found chain 1ku1A in template set T0365 8 :GVFAKSPIK 1ku1A -8 :LVPRGSHMD T0365 17 :PLQEHMDKVYD 1ku1A 562 :EFIECTNAFNE T0365 28 :CASLLVP 1ku1A 577 :GIPMLIE T0365 42 :GNWDDAVQIR 1ku1A 590 :DSDKDIAEFL T0365 70 :LTLPSG 1ku1A 600 :FNNNNR T0365 80 :VERTDLLELL 1ku1A 606 :MNKKTIGLLL T0365 94 :KIANKAKDI 1ku1A 622 :SLLNEYIRL T0365 103 :SGRVIGRQLLIP 1ku1A 641 :AIRILLTKFRLP T0365 115 :QALQVPFIAYL 1ku1A 655 :SQQIERIIEAF T0365 132 :VGLAQQ 1ku1A 666 :SSAYCE T0365 147 :EAGFRGR 1ku1A 672 :NQDYDPS T0365 154 :EVDFVAKMINELDIIEEDT 1ku1A 694 :DADSVFILSYSIIMLNTDL T0365 178 :QLRRQLFALESELN 1ku1A 725 :DYSGNLKGCCNHKD T0365 196 :MFLYKTIEWVGG 1ku1A 742 :WYLDRVYCSIRD Number of specific fragments extracted= 14 number of extra gaps= 0 total=488 Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hw1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0365 read from 1hw1A/merged-good-all-a2m # 1hw1A read from 1hw1A/merged-good-all-a2m # found chain 1hw1A in training set T0365 5 :SILGVFAKSPIKPLQEHMDKVYDCA 1hw1A 85 :TLARLDHESVPQLIDNLLSVRTNIS T0365 33 :VPFFEATITGNWDDAVQIRK 1hw1A 110 :TIFIRTAFRQHPDKAQEVLA T0365 71 :TLPS 1hw1A 130 :TANE T0365 78 :MPVERTDL 1hw1A 134 :VADHADAF T0365 96 :ANKAKDISGRVIGRQLL 1hw1A 142 :AELDYNIFRGLAFASGN T0365 115 :QAL 1hw1A 159 :PIY T0365 119 :VPFIAYLQRCID 1hw1A 166 :NGMKGLYTRIGR T0365 131 :AVGLAQQVINELDDLLEAGFR 1hw1A 185 :ARSLALGFYHKLSALCSEGAH T0365 156 :DFVAKM 1hw1A 206 :DQVYET T0365 165 :LDIIEEDTDDLQIQLRR 1hw1A 212 :VRRYGHESGEIWHRMQK Number of specific fragments extracted= 10 number of extra gaps= 0 total=498 Number of alignments=52 # 1hw1A read from 1hw1A/merged-good-all-a2m # found chain 1hw1A in training set T0365 7 :LGVFAKSPIKPLQEHMDKVYDC 1hw1A 87 :ARLDHESVPQLIDNLLSVRTNI T0365 32 :LVPFFEATITGNWDDAVQIR 1hw1A 109 :STIFIRTAFRQHPDKAQEVL T0365 70 :LTLPS 1hw1A 129 :ATANE T0365 78 :MPVERTDL 1hw1A 134 :VADHADAF T0365 96 :ANKAKDISGRVIGRQLL 1hw1A 142 :AELDYNIFRGLAFASGN T0365 115 :QA 1hw1A 159 :PI T0365 117 :LQVPFIAYLQRCI 1hw1A 164 :ILNGMKGLYTRIG T0365 130 :DAVGLAQQVINELDDLLEAGFR 1hw1A 184 :EARSLALGFYHKLSALCSEGAH T0365 156 :DFVAKM 1hw1A 206 :DQVYET T0365 165 :LDIIEEDTDDLQIQLRR 1hw1A 212 :VRRYGHESGEIWHRMQK Number of specific fragments extracted= 10 number of extra gaps= 0 total=508 Number of alignments=53 # 1hw1A read from 1hw1A/merged-good-all-a2m # found chain 1hw1A in training set T0365 7 :LGVFAKSPIKPLQEHMDKVYD 1hw1A 87 :ARLDHESVPQLIDNLLSVRTN T0365 31 :LLVPFFEATITGNWDDAVQIRKQ 1hw1A 108 :ISTIFIRTAFRQHPDKAQEVLAT T0365 72 :LPS 1hw1A 131 :ANE T0365 78 :MPVERT 1hw1A 134 :VADHAD T0365 87 :ELLTQQDKIANKAKDISG 1hw1A 140 :AFAELDYNIFRGLAFASG T0365 114 :PQALQVPF 1hw1A 158 :NPIYGLIL T0365 122 :IAYLQRCID 1hw1A 169 :KGLYTRIGR T0365 131 :AVGLAQQVINELDDLLEAGFR 1hw1A 185 :ARSLALGFYHKLSALCSEGAH T0365 156 :DFVAKM 1hw1A 206 :DQVYET T0365 165 :LDIIEEDTDDLQIQLRR 1hw1A 212 :VRRYGHESGEIWHRMQK Number of specific fragments extracted= 10 number of extra gaps= 0 total=518 Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2c6cA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2c6cA expands to /projects/compbio/data/pdb/2c6c.pdb.gz 2c6cA:# T0365 read from 2c6cA/merged-good-all-a2m # 2c6cA read from 2c6cA/merged-good-all-a2m # adding 2c6cA to template set # found chain 2c6cA in template set Warning: unaligning (T0365)R151 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c6cA)N657 Warning: unaligning (T0365)E154 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2c6cA)N657 T0365 75 :GLFMPVERTDLLELLTQQ 2c6cA 590 :SIVLPFDCRDYAVVLRKY T0365 96 :ANKAKDISG 2c6cA 608 :ADKIYSISM T0365 105 :RVIGRQLL 2c6cA 621 :EMKTYSVS T0365 118 :QVPFIAYLQRCIDAVGLAQQVIN 2c6cA 629 :FDSLFSAVKNFTEIASKFSERLQ T0365 149 :GF 2c6cA 652 :DF T0365 155 :VDFVAKMINELDIIE 2c6cA 658 :PIVLRMMNDQLMFLE T0365 179 :LRRQLFALESELNPVD 2c6cA 708 :IYDALFDIESKVDPSK T0365 197 :FLYKTIEWVGGLADLAERVGSR 2c6cA 724 :AWGEVKRQIYVAAFTVQAAAET Number of specific fragments extracted= 8 number of extra gaps= 0 total=526 Number of alignments=55 # 2c6cA read from 2c6cA/merged-good-all-a2m # found chain 2c6cA in template set Warning: unaligning (T0365)R151 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c6cA)N657 Warning: unaligning (T0365)E154 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2c6cA)N657 T0365 76 :LFMPVERTDLL 2c6cA 591 :IVLPFDCRDYA T0365 90 :TQQDKIANKAKDISG 2c6cA 602 :VVLRKYADKIYSISM T0365 105 :RVIGRQLLI 2c6cA 621 :EMKTYSVSF T0365 119 :VPFIAYLQRCIDAVGLAQQVI 2c6cA 630 :DSLFSAVKNFTEIASKFSERL T0365 148 :AGF 2c6cA 651 :QDF T0365 155 :VDFVAKMINELDIIE 2c6cA 658 :PIVLRMMNDQLMFLE T0365 179 :LRRQLFALESELNPVDV 2c6cA 708 :IYDALFDIESKVDPSKA T0365 198 :LYKTIEWVGGLADLAERVGSR 2c6cA 725 :WGEVKRQIYVAAFTVQAAAET Number of specific fragments extracted= 8 number of extra gaps= 0 total=534 Number of alignments=56 # 2c6cA read from 2c6cA/merged-good-all-a2m # found chain 2c6cA in template set Warning: unaligning (T0365)R151 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c6cA)N657 Warning: unaligning (T0365)E154 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2c6cA)N657 T0365 77 :FMPVERTDLLELLT 2c6cA 592 :VLPFDCRDYAVVLR T0365 94 :KIANKAKDISG 2c6cA 606 :KYADKIYSISM T0365 113 :IPQALQVP 2c6cA 617 :KHPQEMKT T0365 127 :RCIDAVGLAQQVINELDDLL 2c6cA 631 :SLFSAVKNFTEIASKFSERL T0365 148 :AGF 2c6cA 651 :QDF T0365 155 :VDFVAKMINELDIIE 2c6cA 658 :PIVLRMMNDQLMFLE T0365 179 :LRRQLFALESELNPVD 2c6cA 708 :IYDALFDIESKVDPSK T0365 197 :FLYKTIEWVGGLADLAERVGSRL 2c6cA 724 :AWGEVKRQIYVAAFTVQAAAETL Number of specific fragments extracted= 8 number of extra gaps= 0 total=542 Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xwmA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xwmA expands to /projects/compbio/data/pdb/1xwm.pdb.gz 1xwmA:# T0365 read from 1xwmA/merged-good-all-a2m # 1xwmA read from 1xwmA/merged-good-all-a2m # adding 1xwmA to template set # found chain 1xwmA in template set Warning: unaligning (T0365)S13 because first residue in template chain is (1xwmA)T4 T0365 14 :PIKPLQEHMDKVYDCASLLVPFFEATI 1xwmA 5 :FADDLASLHNKLIEMGRLTEVALQQAI T0365 41 :TGNWDDAVQIRK 1xwmA 36 :TQNANLAMAVID T0365 53 :QISLAEKQGDSLKREIRLT 1xwmA 51 :SIDALEEEVNDFALWLIAA T0365 80 :VERTDL 1xwmA 72 :PVATDL T0365 86 :LELLTQQDKIANKAKDISGRVIGRQLL 1xwmA 84 :IKIASDIERIADFAVNIAKACIRIGGQ T0365 116 :ALQ 1xwmA 111 :PFV T0365 119 :VPFIAYLQRCIDAVGL 1xwmA 117 :GPLVLMYRLATDMVST T0365 138 :VINELDD 1xwmA 133 :AIAAYDR T0365 153 :REVD 1xwmA 140 :EDAS T0365 161 :MINELDIIEEDTDDLQIQLRRQL 1xwmA 144 :LAAQIADMDHRVDEQYGEMMASL T0365 188 :SELNPVDVMFLYKTIEWVGGLADLAERVGSRLELMLA 1xwmA 173 :DAATLAQMNVLALVARYIERTADHATNIAEHLVYLVK Number of specific fragments extracted= 11 number of extra gaps= 0 total=553 Number of alignments=58 # 1xwmA read from 1xwmA/merged-good-all-a2m # found chain 1xwmA in template set Warning: unaligning (T0365)S13 because first residue in template chain is (1xwmA)T4 T0365 14 :PIKPLQEHMDKVYDCASLLVPFFEATI 1xwmA 5 :FADDLASLHNKLIEMGRLTEVALQQAI T0365 41 :TGNWDDAVQIRK 1xwmA 36 :TQNANLAMAVID T0365 53 :QISLAEKQGDSLKREIRLT 1xwmA 51 :SIDALEEEVNDFALWLIAA T0365 76 :L 1xwmA 71 :Q T0365 80 :VERT 1xwmA 72 :PVAT T0365 84 :DL 1xwmA 79 :RI T0365 86 :LELLTQQDKIANKAKDISGRVIGRQL 1xwmA 84 :IKIASDIERIADFAVNIAKACIRIGG T0365 112 :LIPQAL 1xwmA 111 :PFVMDI T0365 119 :VPFIAYLQRCID 1xwmA 117 :GPLVLMYRLATD T0365 134 :LAQQVINELDD 1xwmA 129 :MVSTAIAAYDR T0365 153 :REVD 1xwmA 140 :EDAS T0365 161 :MINELDIIEEDTDDLQIQLRRQLFALESE 1xwmA 144 :LAAQIADMDHRVDEQYGEMMASLLAVAKT T0365 191 :N 1xwmA 173 :D T0365 192 :PVDVMFLYKTIEWVGGLADLAERVGSRLELMLAR 1xwmA 177 :LAQMNVLALVARYIERTADHATNIAEHLVYLVKG Number of specific fragments extracted= 14 number of extra gaps= 0 total=567 Number of alignments=59 # 1xwmA read from 1xwmA/merged-good-all-a2m # found chain 1xwmA in template set T0365 14 :PIKPLQEHMDKVYDCASLLVPFFE 1xwmA 12 :LHNKLIEMGRLTEVALQQAIEAFQ T0365 41 :TGNWDDAVQIRK 1xwmA 36 :TQNANLAMAVID T0365 53 :QISLAEKQGDSLKREIRLT 1xwmA 51 :SIDALEEEVNDFALWLIAA T0365 80 :VERTD 1xwmA 72 :PVATD T0365 85 :LLELLTQQDKIANKAKDISGRVIGRQLLIP 1xwmA 83 :AIKIASDIERIADFAVNIAKACIRIGGQPF T0365 119 :VPFIAYLQRCIDAVGLAQQVINE 1xwmA 117 :GPLVLMYRLATDMVSTAIAAYDR T0365 153 :REVD 1xwmA 140 :EDAS T0365 161 :MINELDIIEEDTDDLQIQLRRQLFALES 1xwmA 144 :LAAQIADMDHRVDEQYGEMMASLLAVAK T0365 190 :LN 1xwmA 172 :TD T0365 192 :PVDVMFLYKTIEWVGGLADLAERVGSRLELML 1xwmA 177 :LAQMNVLALVARYIERTADHATNIAEHLVYLV Number of specific fragments extracted= 10 number of extra gaps= 0 total=577 Number of alignments=60 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0365//projects/compbio/experiments/protein-predict/casp7/T0365/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0365//projects/compbio/experiments/protein-predict/casp7/T0365/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0365/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0365/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)T172.CB) [> 3.7738 = 6.2897 < 8.1766] w=1.0000 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)L179.CB) [> 3.9122 = 6.5203 < 8.4764] w=0.9417 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)M161.CB) [> 3.9397 = 6.5662 < 8.5360] w=0.9049 to align # Constraint # added constraint: constraint((T0365)F35.CB, (T0365)I50.CB) [> 3.3772 = 5.6286 < 7.3172] w=0.8903 to align # Constraint # added constraint: constraint((T0365)L32.CB, (T0365)I54.CB) [> 3.4881 = 5.8136 < 7.5577] w=0.8348 to align # Constraint # added constraint: constraint((T0365)F36.CB, (T0365)A47.CB) [> 3.7052 = 6.1753 < 8.0278] w=0.8346 to align # Constraint # added constraint: constraint((T0365)L32.CB, (T0365)A99.CB) [> 3.7682 = 6.2804 < 8.1645] w=0.8294 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)L175.CB) [> 3.4561 = 5.7602 < 7.4883] w=0.7721 to align # Constraint # added constraint: constraint((T0365)R51.CB, (T0365)S103.CB) [> 3.1095 = 5.1825 < 6.7373] w=0.7703 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)S103.CB) [> 3.3321 = 5.5535 < 7.2195] w=0.7703 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)M161.CB) [> 3.5844 = 5.9740 < 7.7662] w=0.7486 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)T201.CB) [> 3.5529 = 5.9215 < 7.6980] w=0.7235 to align # Constraint # added constraint: constraint((T0365)V106.CB, (T0365)F121.CB) [> 3.2556 = 5.4260 < 7.0538] w=0.7222 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)I102.CB) [> 4.3112 = 7.1854 < 9.3410] w=0.7113 to align # Constraint # added constraint: constraint((T0365)L32.CB, (T0365)I50.CB) [> 4.0189 = 6.6982 < 8.7077] w=0.7060 to align # Constraint # added constraint: constraint((T0365)R51.CB, (T0365)K100.CB) [> 3.5705 = 5.9508 < 7.7361] w=0.6931 to align # Constraint # added constraint: constraint((T0365)V25.CB, (T0365)G61.CA) [> 4.0041 = 6.6736 < 8.6756] w=0.6918 to align # Constraint # added constraint: constraint((T0365)L134.CB, (T0365)I168.CB) [> 4.0611 = 6.7684 < 8.7990] w=0.6441 to align # Constraint # added constraint: constraint((T0365)T172.CB, (T0365)V205.CB) [> 4.1390 = 6.8984 < 8.9679] w=0.6354 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)A212.CB) [> 3.8627 = 6.4378 < 8.3692] w=0.6325 to align # Constraint # added constraint: constraint((T0365)R127.CB, (T0365)T172.CB) [> 3.4476 = 5.7461 < 7.4699] w=0.6303 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)L179.CB) [> 3.8089 = 6.3481 < 8.2525] w=0.6223 to align # Constraint # added constraint: constraint((T0365)L183.CB, (T0365)L198.CB) [> 3.7847 = 6.3079 < 8.2002] w=0.6152 to align # Constraint # added constraint: constraint((T0365)L179.CB, (T0365)I202.CB) [> 3.5584 = 5.9307 < 7.7099] w=0.6149 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)L219.CB) [> 4.0304 = 6.7173 < 8.7325] w=0.6132 to align # Constraint # added constraint: constraint((T0365)E169.CB, (T0365)A209.CB) [> 3.6268 = 6.0447 < 7.8582] w=0.6114 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)V205.CB) [> 4.2147 = 7.0245 < 9.1318] w=0.6044 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)Q176.CB) [> 4.1009 = 6.8348 < 8.8852] w=0.5989 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)V205.CB) [> 3.4587 = 5.7645 < 7.4939] w=0.5969 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)T201.CB) [> 3.9491 = 6.5818 < 8.5563] w=0.5954 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)I168.CB) [> 3.3920 = 5.6533 < 7.3493] w=0.5926 to align # Constraint # added constraint: constraint((T0365)A47.CB, (T0365)V106.CB) [> 2.8464 = 4.7439 < 6.1671] w=0.5895 to align # Constraint # added constraint: constraint((T0365)V106.CB, (T0365)Y124.CB) [> 3.3264 = 5.5440 < 7.2072] w=0.5886 to align # Constraint # added constraint: constraint((T0365)T39.CB, (T0365)V106.CB) [> 3.8845 = 6.4741 < 8.4164] w=0.5882 to align # Constraint # added constraint: constraint((T0365)F36.CB, (T0365)I50.CB) [> 3.2200 = 5.3666 < 6.9766] w=0.5872 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)Q176.CB) [> 3.9809 = 6.6348 < 8.6252] w=0.5829 to align # Constraint # added constraint: constraint((T0365)V25.CB, (T0365)Q92.CB) [> 3.9639 = 6.6065 < 8.5885] w=0.5717 to align # Constraint # added constraint: constraint((T0365)L183.CB, (T0365)V195.CB) [> 3.4121 = 5.6869 < 7.3930] w=0.5702 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)I162.CB) [> 3.8765 = 6.4609 < 8.3992] w=0.5685 to align # Constraint # added constraint: constraint((T0365)L31.CB, (T0365)A57.CB) [> 4.1263 = 6.8772 < 8.9403] w=0.5673 to align # Constraint # added constraint: constraint((T0365)C28.CB, (T0365)A57.CB) [> 2.7301 = 4.5501 < 5.9151] w=0.5673 to align # Constraint # added constraint: constraint((T0365)F184.CB, (T0365)V195.CB) [> 3.9321 = 6.5535 < 8.5195] w=0.5573 to align # Constraint # added constraint: constraint((T0365)L32.CB, (T0365)I95.CB) [> 3.3995 = 5.6658 < 7.3656] w=0.5485 to align # Constraint # added constraint: constraint((T0365)A29.CB, (T0365)Q92.CB) [> 3.5325 = 5.8876 < 7.6538] w=0.5485 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)L165.CB) [> 3.4656 = 5.7761 < 7.5089] w=0.5484 to align # Constraint # added constraint: constraint((T0365)V48.CB, (T0365)I107.CB) [> 4.4682 = 7.4470 < 9.6811] w=0.5483 to align # Constraint # added constraint: constraint((T0365)P120.CB, (T0365)L175.CB) [> 3.5143 = 5.8571 < 7.6142] w=0.5483 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)L208.CB) [> 3.1388 = 5.2313 < 6.8007] w=0.5480 to align # Constraint # added constraint: constraint((T0365)E58.CB, (T0365)Q92.CB) [> 4.3079 = 7.1798 < 9.3337] w=0.5451 to align # Constraint # added constraint: constraint((T0365)I54.CB, (T0365)A96.CB) [> 2.6091 = 4.3485 < 5.6530] w=0.5451 to align # Constraint # added constraint: constraint((T0365)V25.CB, (T0365)L89.CB) [> 3.5880 = 5.9800 < 7.7740] w=0.5438 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)L208.CB) [> 4.2293 = 7.0488 < 9.1635] w=0.5391 to align # Constraint # added constraint: constraint((T0365)T172.CB, (T0365)G206.CA) [> 3.5245 = 5.8741 < 7.6364] w=0.5377 to align # Constraint # added constraint: constraint((T0365)R105.CB, (T0365)T201.CB) [> 3.1142 = 5.1903 < 6.7474] w=0.5354 to align # Constraint # added constraint: constraint((T0365)I162.CB, (T0365)E220.CB) [> 3.3967 = 5.6612 < 7.3596] w=0.5347 to align # Constraint # added constraint: constraint((T0365)A38.CB, (T0365)I50.CB) [> 3.2788 = 5.4647 < 7.1041] w=0.5327 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)L125.CB) [> 4.5767 = 7.6278 < 9.9161] w=0.5308 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)A99.CB) [> 3.3743 = 5.6238 < 7.3109] w=0.5303 to align # Constraint # added constraint: constraint((T0365)T39.CB, (T0365)S103.CB) [> 2.9554 = 4.9257 < 6.4034] w=0.5290 to align # Constraint # added constraint: constraint((T0365)F36.CB, (T0365)A99.CB) [> 3.0421 = 5.0702 < 6.5912] w=0.5290 to align # Constraint # added constraint: constraint((T0365)F35.CB, (T0365)A99.CB) [> 3.0832 = 5.1387 < 6.6803] w=0.5290 to align # Constraint # added constraint: constraint((T0365)L32.CB, (T0365)A96.CB) [> 3.0722 = 5.1203 < 6.6564] w=0.5290 to align # Constraint # added constraint: constraint((T0365)A123.CB, (T0365)L175.CB) [> 3.7549 = 6.2582 < 8.1357] w=0.5247 to align # Constraint # added constraint: constraint((T0365)V25.CB, (T0365)A99.CB) [> 3.7970 = 6.3284 < 8.2269] w=0.5225 to align # Constraint # added constraint: constraint((T0365)V25.CB, (T0365)I95.CB) [> 3.2751 = 5.4584 < 7.0960] w=0.5225 to align # Constraint # added constraint: constraint((T0365)L125.CB, (T0365)V205.CB) [> 3.3816 = 5.6359 < 7.3267] w=0.5200 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)I202.CB) [> 3.7464 = 6.2441 < 8.1173] w=0.5165 to align # Constraint # added constraint: constraint((T0365)L142.CB, (T0365)V158.CB) [> 3.7961 = 6.3269 < 8.2250] w=0.5152 to align # Constraint # added constraint: constraint((T0365)K65.CB, (T0365)L86.CB) [> 3.3117 = 5.5195 < 7.1753] w=0.5148 to align # Constraint # added constraint: constraint((T0365)D62.CB, (T0365)L89.CB) [> 4.0290 = 6.7150 < 8.7294] w=0.5148 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)L165.CB) [> 3.7095 = 6.1824 < 8.0372] w=0.5136 to align # Constraint # added constraint: constraint((T0365)G61.CA, (T0365)L86.CB) [> 4.2939 = 7.1566 < 9.3035] w=0.5126 to align # Constraint # added constraint: constraint((T0365)C28.CB, (T0365)E58.CB) [> 3.9653 = 6.6089 < 8.5915] w=0.5120 to align # Constraint # added constraint: constraint((T0365)I40.CB, (T0365)I102.CB) [> 4.1560 = 6.9267 < 9.0047] w=0.5011 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)A209.CB) [> 2.5327 = 4.2213 < 5.4876] w=0.4992 to align # Constraint # added constraint: constraint((T0365)L134.CB, (T0365)A212.CB) [> 4.0590 = 6.7650 < 8.7945] w=0.4992 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)G216.CA) [> 3.1123 = 5.1872 < 6.7434] w=0.4992 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)L219.CB) [> 3.1863 = 5.3105 < 6.9036] w=0.4992 to align # Constraint # added constraint: constraint((T0365)L32.CB, (T0365)Q92.CB) [> 3.0454 = 5.0757 < 6.5985] w=0.4947 to align # Constraint # added constraint: constraint((T0365)K24.CB, (T0365)A57.CB) [> 4.3876 = 7.3126 < 9.5064] w=0.4947 to align # Constraint # added constraint: constraint((T0365)G108.CA, (T0365)F197.CB) [> 3.5055 = 5.8425 < 7.5953] w=0.4914 to align # Constraint # added constraint: constraint((T0365)C28.CB, (T0365)L89.CB) [> 3.8267 = 6.3779 < 8.2912] w=0.4899 to align # Constraint # added constraint: constraint((T0365)R180.CB, (T0365)Y199.CB) [> 4.1756 = 6.9594 < 9.0472] w=0.4790 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)V205.CB) [> 4.5822 = 7.6370 < 9.9281] w=0.4790 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)E169.CB) [> 3.8317 = 6.3862 < 8.3020] w=0.4711 to align # Constraint # added constraint: constraint((T0365)Q91.CB, (T0365)R214.CB) [> 3.1485 = 5.2474 < 6.8217] w=0.4711 to align # Constraint # added constraint: constraint((T0365)L88.CB, (T0365)R218.CB) [> 3.4304 = 5.7173 < 7.4325] w=0.4711 to align # Constraint # added constraint: constraint((T0365)L88.CB, (T0365)V215.CB) [> 3.2786 = 5.4643 < 7.1036] w=0.4711 to align # Constraint # added constraint: constraint((T0365)E87.CB, (T0365)R218.CB) [> 2.9894 = 4.9824 < 6.4771] w=0.4711 to align # Constraint # added constraint: constraint((T0365)G61.CA, (T0365)L89.CB) [> 3.3961 = 5.6602 < 7.3582] w=0.4711 to align # Constraint # added constraint: constraint((T0365)E58.CB, (T0365)T90.CB) [> 4.0491 = 6.7486 < 8.7731] w=0.4711 to align # Constraint # added constraint: constraint((T0365)A57.CB, (T0365)L89.CB) [> 4.4723 = 7.4538 < 9.6900] w=0.4711 to align # Constraint # added constraint: constraint((T0365)S55.CB, (T0365)D93.CB) [> 3.8576 = 6.4293 < 8.3581] w=0.4711 to align # Constraint # added constraint: constraint((T0365)I54.CB, (T0365)D93.CB) [> 3.4581 = 5.7635 < 7.4926] w=0.4711 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)K100.CB) [> 3.6707 = 6.1179 < 7.9533] w=0.4711 to align # Constraint # added constraint: constraint((T0365)A47.CB, (T0365)I107.CB) [> 3.1379 = 5.2299 < 6.7989] w=0.4711 to align # Constraint # added constraint: constraint((T0365)A47.CB, (T0365)S103.CB) [> 2.5135 = 4.1891 < 5.4458] w=0.4711 to align # Constraint # added constraint: constraint((T0365)W44.CB, (T0365)I107.CB) [> 3.6400 = 6.0667 < 7.8867] w=0.4711 to align # Constraint # added constraint: constraint((T0365)W44.CB, (T0365)V106.CB) [> 4.5869 = 7.6448 < 9.9383] w=0.4711 to align # Constraint # added constraint: constraint((T0365)V33.CB, (T0365)I129.CB) [> 4.4245 = 7.3741 < 9.5863] w=0.4711 to align # Constraint # added constraint: constraint((T0365)V155.CB, (T0365)L223.CB) [> 3.1706 = 5.2843 < 6.8696] w=0.4711 to align # Constraint # added constraint: constraint((T0365)V155.CB, (T0365)E220.CB) [> 3.1639 = 5.2732 < 6.8551] w=0.4711 to align # Constraint # added constraint: constraint((T0365)R153.CB, (T0365)L223.CB) [> 3.4738 = 5.7896 < 7.5265] w=0.4711 to align # Constraint # added constraint: constraint((T0365)R153.CB, (T0365)L219.CB) [> 3.6987 = 6.1645 < 8.0138] w=0.4711 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)V215.CB) [> 3.8425 = 6.4042 < 8.3255] w=0.4711 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)V215.CB) [> 3.8397 = 6.3995 < 8.3194] w=0.4711 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)V205.CB) [> 3.0029 = 5.0048 < 6.5062] w=0.4711 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)I202.CB) [> 4.0369 = 6.7282 < 8.7466] w=0.4711 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)I202.CB) [> 3.6182 = 6.0304 < 7.8394] w=0.4711 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)L198.CB) [> 4.0673 = 6.7788 < 8.8124] w=0.4711 to align # Constraint # added constraint: constraint((T0365)P120.CB, (T0365)Q178.CB) [> 3.5571 = 5.9284 < 7.7070] w=0.4711 to align # Constraint # added constraint: constraint((T0365)R105.CB, (T0365)K200.CB) [> 3.3836 = 5.6394 < 7.3312] w=0.4711 to align # Constraint # added constraint: constraint((T0365)D101.CB, (T0365)W204.CB) [> 3.2570 = 5.4283 < 7.0567] w=0.4711 to align # Constraint # added constraint: constraint((T0365)A99.CB, (T0365)L208.CB) [> 4.6029 = 7.6715 < 9.9729] w=0.4711 to align # Constraint # added constraint: constraint((T0365)K98.CB, (T0365)L208.CB) [> 3.0289 = 5.0481 < 6.5625] w=0.4711 to align # Constraint # added constraint: constraint((T0365)K98.CB, (T0365)G207.CA) [> 3.8321 = 6.3869 < 8.3029] w=0.4711 to align # Constraint # added constraint: constraint((T0365)K98.CB, (T0365)W204.CB) [> 2.6377 = 4.3962 < 5.7150] w=0.4711 to align # Constraint # added constraint: constraint((T0365)I95.CB, (T0365)A212.CB) [> 4.6182 = 7.6970 < 10.0061] w=0.4711 to align # Constraint # added constraint: constraint((T0365)I95.CB, (T0365)L211.CB) [> 3.0368 = 5.0612 < 6.5796] w=0.4711 to align # Constraint # added constraint: constraint((T0365)I95.CB, (T0365)L208.CB) [> 3.1970 = 5.3283 < 6.9268] w=0.4711 to align # Constraint # added constraint: constraint((T0365)Q92.CB, (T0365)V215.CB) [> 4.6497 = 7.7495 < 10.0743] w=0.4711 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)I162.CB) [> 3.4261 = 5.7101 < 7.4232] w=0.4711 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)L64.CB) [> 3.2008 = 5.3347 < 6.9351] w=0.4698 to align # Constraint # added constraint: constraint((T0365)K24.CB, (T0365)L64.CB) [> 3.7917 = 6.3196 < 8.2154] w=0.4698 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)V215.CB) [> 4.3671 = 7.2785 < 9.4620] w=0.4698 to align # Constraint # added constraint: constraint((T0365)E169.CB, (T0365)E213.CB) [> 3.6490 = 6.0816 < 7.9061] w=0.4698 to align # Constraint # added constraint: constraint((T0365)D130.CB, (T0365)I168.CB) [> 3.9697 = 6.6162 < 8.6010] w=0.4666 to align # Constraint # added constraint: constraint((T0365)D143.CB, (T0365)V158.CB) [> 2.9952 = 4.9920 < 6.4896] w=0.4595 to align # Constraint # added constraint: constraint((T0365)T39.CB, (T0365)K100.CB) [> 4.6496 = 7.7494 < 10.0742] w=0.4518 to align # Constraint # added constraint: constraint((T0365)T39.CB, (T0365)A99.CB) [> 2.6756 = 4.4593 < 5.7971] w=0.4518 to align # Constraint # added constraint: constraint((T0365)L31.CB, (T0365)Q53.CB) [> 4.2719 = 7.1199 < 9.2558] w=0.4483 to align # Constraint # added constraint: constraint((T0365)V25.CB, (T0365)K98.CB) [> 3.8709 = 6.4515 < 8.3870] w=0.4440 to align # Constraint # added constraint: constraint((T0365)A29.CB, (T0365)K98.CB) [> 4.7208 = 7.8680 < 10.2284] w=0.4440 to align # Constraint # added constraint: constraint((T0365)A29.CB, (T0365)I102.CB) [> 3.3592 = 5.5986 < 7.2782] w=0.4440 to align # Constraint # added constraint: constraint((T0365)F36.CB, (T0365)I113.CB) [> 3.9519 = 6.5866 < 8.5625] w=0.4440 to align # Constraint # added constraint: constraint((T0365)L165.CB, (T0365)A212.CB) [> 4.0296 = 6.7160 < 8.7307] w=0.4380 to align # Constraint # added constraint: constraint((T0365)F35.CB, (T0365)Y124.CB) [> 3.9110 = 6.5183 < 8.4738] w=0.4374 to align # Constraint # added constraint: constraint((T0365)F36.CB, (T0365)S103.CB) [> 4.0012 = 6.6687 < 8.6692] w=0.4369 to align # Constraint # added constraint: constraint((T0365)L125.CB, (T0365)Q176.CB) [> 3.3874 = 5.6457 < 7.3394] w=0.4325 to align # Constraint # added constraint: constraint((T0365)C28.CB, (T0365)G61.CA) [> 4.3255 = 7.2091 < 9.3718] w=0.4321 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)Y124.CB) [> 4.0693 = 6.7822 < 8.8169] w=0.4250 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)A209.CB) [> 3.2703 = 5.4506 < 7.0857] w=0.4206 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)A212.CB) [> 2.3057 = 3.8429 < 4.9958] w=0.4206 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)E213.CB) [> 4.1167 = 6.8612 < 8.9196] w=0.4206 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)A212.CB) [> 2.9604 = 4.9340 < 6.4142] w=0.4206 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)A212.CB) [> 2.7443 = 4.5738 < 5.9460] w=0.4206 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)V215.CB) [> 2.8707 = 4.7845 < 6.2198] w=0.4206 to align # Constraint # added constraint: constraint((T0365)P17.CB, (T0365)I68.CB) [> 3.3705 = 5.6176 < 7.3028] w=0.4187 to align # Constraint # added constraint: constraint((T0365)F35.CB, (T0365)A96.CB) [> 3.4849 = 5.8082 < 7.5507] w=0.4160 to align # Constraint # added constraint: constraint((T0365)F36.CB, (T0365)I54.CB) [> 3.8142 = 6.3570 < 8.2641] w=0.4134 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)R153.CB) [> 4.2455 = 7.0759 < 9.1986] w=0.4067 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)R153.CB) [> 3.3677 = 5.6128 < 7.2967] w=0.4067 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)K65.CB) [> 3.8195 = 6.3658 < 8.2755] w=0.3926 to align # Constraint # added constraint: constraint((T0365)K24.CB, (T0365)Q60.CB) [> 4.0157 = 6.6929 < 8.7008] w=0.3926 to align # Constraint # added constraint: constraint((T0365)A29.CB, (T0365)V132.CB) [> 4.4872 = 7.4787 < 9.7223] w=0.3926 to align # Constraint # added constraint: constraint((T0365)E37.CB, (T0365)I129.CB) [> 4.0449 = 6.7415 < 8.7639] w=0.3926 to align # Constraint # added constraint: constraint((T0365)I40.CB, (T0365)I122.CB) [> 4.0609 = 6.7681 < 8.7986] w=0.3926 to align # Constraint # added constraint: constraint((T0365)I40.CB, (T0365)L125.CB) [> 2.6866 = 4.4777 < 5.8210] w=0.3926 to align # Constraint # added constraint: constraint((T0365)I95.CB, (T0365)V132.CB) [> 4.2387 = 7.0646 < 9.1840] w=0.3926 to align # Constraint # added constraint: constraint((T0365)P114.CB, (T0365)L198.CB) [> 4.2576 = 7.0961 < 9.2249] w=0.3926 to align # Constraint # added constraint: constraint((T0365)L165.CB, (T0365)E213.CB) [> 3.6184 = 6.0306 < 7.8398] w=0.3926 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)Q176.CB) [> 4.2706 = 7.1177 < 9.2530] w=0.3916 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)R180.CB) [> 4.0114 = 6.6858 < 8.6915] w=0.3886 to align # Constraint # added constraint: constraint((T0365)L125.CB, (T0365)R180.CB) [> 4.0192 = 6.6987 < 8.7083] w=0.3837 to align # Constraint # added constraint: constraint((T0365)R69.CB, (T0365)V80.CB) [> 3.7277 = 6.2128 < 8.0766] w=0.3835 to align # Constraint # added constraint: constraint((T0365)E141.CB, (T0365)M161.CB) [> 3.0842 = 5.1403 < 6.6824] w=0.3800 to align # Constraint # added constraint: constraint((T0365)L88.CB, (T0365)L142.CB) [> 3.2866 = 5.4778 < 7.1211] w=0.3791 to align # Constraint # added constraint: constraint((T0365)Q118.CB, (T0365)L183.CB) [> 2.9954 = 4.9923 < 6.4900] w=0.3633 to align # Constraint # added constraint: constraint((T0365)L142.CB, (T0365)R153.CB) [> 3.5922 = 5.9870 < 7.7831] w=0.3436 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)L219.CB) [> 2.9540 = 4.9234 < 6.4004] w=0.3421 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)G216.CA) [> 4.3062 = 7.1770 < 9.3301] w=0.3421 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)G216.CA) [> 2.9612 = 4.9354 < 6.4160] w=0.3421 to align # Constraint # added constraint: constraint((T0365)S103.CB, (T0365)Q176.CB) [> 3.8044 = 6.3407 < 8.2429] w=0.3408 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)R109.CB) [> 4.0399 = 6.7332 < 8.7532] w=0.3404 to align # Constraint # added constraint: constraint((T0365)D46.CB, (T0365)G108.CA) [> 4.6996 = 7.8327 < 10.1825] w=0.3404 to align # Constraint # added constraint: constraint((T0365)F35.CB, (T0365)L117.CB) [> 2.6812 = 4.4686 < 5.8092] w=0.3404 to align # Constraint # added constraint: constraint((T0365)P34.CB, (T0365)L117.CB) [> 4.3358 = 7.2263 < 9.3942] w=0.3404 to align # Constraint # added constraint: constraint((T0365)F35.CB, (T0365)Q53.CB) [> 3.7446 = 6.2411 < 8.1134] w=0.3404 to align # Constraint # added constraint: constraint((T0365)C28.CB, (T0365)A96.CB) [> 4.2641 = 7.1069 < 9.2389] w=0.3361 to align # Constraint # added constraint: constraint((T0365)E141.CB, (T0365)R153.CB) [> 3.8150 = 6.3584 < 8.2659] w=0.3360 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)C128.CB) [> 3.0122 = 5.0203 < 6.5264] w=0.3353 to align # Constraint # added constraint: constraint((T0365)R109.CB, (T0365)F121.CB) [> 2.9497 = 4.9163 < 6.3911] w=0.3321 to align # Constraint # added constraint: constraint((T0365)I68.CB, (T0365)L85.CB) [> 3.6108 = 6.0180 < 7.8233] w=0.3318 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)R218.CB) [> 4.7279 = 7.8799 < 10.2438] w=0.3141 to align # Constraint # added constraint: constraint((T0365)P114.CB, (T0365)V195.CB) [> 3.8101 = 6.3501 < 8.2552] w=0.3141 to align # Constraint # added constraint: constraint((T0365)V33.CB, (T0365)Q136.CB) [> 3.9388 = 6.5646 < 8.5340] w=0.3141 to align # Constraint # added constraint: constraint((T0365)V33.CB, (T0365)G133.CA) [> 3.6582 = 6.0970 < 7.9261] w=0.3141 to align # Constraint # added constraint: constraint((T0365)A29.CB, (T0365)Q136.CB) [> 3.0960 = 5.1600 < 6.7080] w=0.3141 to align # Constraint # added constraint: constraint((T0365)Y26.CB, (T0365)Q136.CB) [> 3.9399 = 6.5664 < 8.5364] w=0.3141 to align # Constraint # added constraint: constraint((T0365)V155.CB, (T0365)A224.CB) [> 3.6702 = 6.1170 < 7.9521] w=0.3141 to align # Constraint # added constraint: constraint((T0365)I162.CB, (T0365)L219.CB) [> 3.5538 = 5.9230 < 7.6999] w=0.3128 to align # Constraint # added constraint: constraint((T0365)L125.CB, (T0365)L208.CB) [> 4.2967 = 7.1612 < 9.3095] w=0.3128 to align # Constraint # added constraint: constraint((T0365)Q110.CB, (T0365)F121.CB) [> 3.4871 = 5.8118 < 7.5553] w=0.3107 to align # Constraint # added constraint: constraint((T0365)A47.CB, (T0365)L142.CB) [> 4.3925 = 7.3209 < 9.5171] w=0.3096 to align # Constraint # added constraint: constraint((T0365)L86.CB, (T0365)F150.CB) [> 3.6893 = 6.1489 < 7.9935] w=0.3035 to align # Constraint # added constraint: constraint((T0365)I15.CB, (T0365)N140.CB) [> 4.0146 = 6.6910 < 8.6983] w=0.3005 to align # Constraint # added constraint: constraint((T0365)V106.CB, (T0365)T201.CB) [> 4.3074 = 7.1789 < 9.3326] w=0.2999 to align # Constraint # added constraint: constraint((T0365)Q136.CB, (T0365)L165.CB) [> 4.1054 = 6.8423 < 8.8949] w=0.2992 to align # Constraint # added constraint: constraint((T0365)I162.CB, (T0365)L223.CB) [> 2.6868 = 4.4780 < 5.8214] w=0.2992 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)L219.CB) [> 3.2094 = 5.3490 < 6.9537] w=0.2992 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)L219.CB) [> 3.8119 = 6.3531 < 8.2591] w=0.2992 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)A209.CB) [> 4.2839 = 7.1398 < 9.2818] w=0.2917 to align # Constraint # added constraint: constraint((T0365)R105.CB, (T0365)L198.CB) [> 4.4026 = 7.3376 < 9.5389] w=0.2917 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)A159.CB) [> 3.2003 = 5.3339 < 6.9341] w=0.2856 to align # Constraint # added constraint: constraint((T0365)L134.CB, (T0365)E164.CB) [> 4.2977 = 7.1628 < 9.3117] w=0.2844 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)F150.CB) [> 3.2858 = 5.4763 < 7.1192] w=0.2801 to align # Constraint # added constraint: constraint((T0365)I68.CB, (T0365)V80.CB) [> 3.4711 = 5.7853 < 7.5208] w=0.2793 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)G216.CA) [> 4.3873 = 7.3122 < 9.5058] w=0.2781 to align # Constraint # added constraint: constraint((T0365)Q118.CB, (T0365)D194.CB) [> 3.9231 = 6.5385 < 8.5000] w=0.2688 to align # Constraint # added constraint: constraint((T0365)L31.CB, (T0365)Y124.CB) [> 2.4952 = 4.1586 < 5.4062] w=0.2674 to align # Constraint # added constraint: constraint((T0365)L31.CB, (T0365)F121.CB) [> 4.4133 = 7.3555 < 9.5622] w=0.2674 to align # Constraint # added constraint: constraint((T0365)Y26.CB, (T0365)D62.CB) [> 3.7284 = 6.2140 < 8.0782] w=0.2674 to align # Constraint # added constraint: constraint((T0365)L111.CB, (T0365)Q182.CB) [> 3.9666 = 6.6110 < 8.5943] w=0.2627 to align # Constraint # added constraint: constraint((T0365)I129.CB, (T0365)L142.CB) [> 3.6447 = 6.0744 < 7.8968] w=0.2624 to align # Constraint # added constraint: constraint((T0365)L145.CB, (T0365)V158.CB) [> 3.1014 = 5.1690 < 6.7197] w=0.2623 to align # Constraint # added constraint: constraint((T0365)L145.CB, (T0365)F157.CB) [> 3.3910 = 5.6517 < 7.3472] w=0.2623 to align # Constraint # added constraint: constraint((T0365)L142.CB, (T0365)V155.CB) [> 4.2498 = 7.0830 < 9.2079] w=0.2576 to align # Constraint # added constraint: constraint((T0365)L89.CB, (T0365)I102.CB) [> 3.9902 = 6.6504 < 8.6455] w=0.2480 to align # Constraint # added constraint: constraint((T0365)S30.CB, (T0365)I54.CB) [> 4.1666 = 6.9443 < 9.0276] w=0.2454 to align # Constraint # added constraint: constraint((T0365)A96.CB, (T0365)Q136.CB) [> 4.1425 = 6.9041 < 8.9753] w=0.2454 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)L211.CB) [> 4.4374 = 7.3957 < 9.6144] w=0.2453 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)Q176.CB) [> 3.6517 = 6.0862 < 7.9120] w=0.2436 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)F157.CB) [> 4.4937 = 7.4895 < 9.7364] w=0.2434 to align # Constraint # added constraint: constraint((T0365)E141.CB, (T0365)E154.CB) [> 2.9603 = 4.9339 < 6.4141] w=0.2434 to align # Constraint # added constraint: constraint((T0365)I107.CB, (T0365)L175.CB) [> 2.7059 = 4.5099 < 5.8629] w=0.2424 to align # Constraint # added constraint: constraint((T0365)G104.CA, (T0365)D171.CB) [> 4.6028 = 7.6714 < 9.9728] w=0.2424 to align # Constraint # added constraint: constraint((T0365)L64.CB, (T0365)I95.CB) [> 3.1716 = 5.2861 < 6.8719] w=0.2424 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)A135.CB) [> 3.9121 = 6.5201 < 8.4761] w=0.2404 to align # Constraint # added constraint: constraint((T0365)L111.CB, (T0365)V193.CB) [> 4.3898 = 7.3164 < 9.5113] w=0.2356 to align # Constraint # added constraint: constraint((T0365)G108.CA, (T0365)V193.CB) [> 4.7207 = 7.8678 < 10.2281] w=0.2356 to align # Constraint # added constraint: constraint((T0365)A99.CB, (T0365)W204.CB) [> 4.6532 = 7.7554 < 10.0820] w=0.2356 to align # Constraint # added constraint: constraint((T0365)Q91.CB, (T0365)R218.CB) [> 4.3836 = 7.3060 < 9.4979] w=0.2356 to align # Constraint # added constraint: constraint((T0365)W44.CB, (T0365)R109.CB) [> 3.5491 = 5.9152 < 7.6898] w=0.2356 to align # Constraint # added constraint: constraint((T0365)L183.CB, (T0365)M196.CB) [> 4.4312 = 7.3854 < 9.6010] w=0.2356 to align # Constraint # added constraint: constraint((T0365)V158.CB, (T0365)E220.CB) [> 3.2794 = 5.4658 < 7.1055] w=0.2356 to align # Constraint # added constraint: constraint((T0365)V158.CB, (T0365)G216.CA) [> 3.3288 = 5.5480 < 7.2124] w=0.2356 to align # Constraint # added constraint: constraint((T0365)R153.CB, (T0365)M222.CB) [> 3.8455 = 6.4092 < 8.3319] w=0.2356 to align # Constraint # added constraint: constraint((T0365)R153.CB, (T0365)E220.CB) [> 3.7707 = 6.2845 < 8.1699] w=0.2356 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)M222.CB) [> 4.6592 = 7.7654 < 10.0950] w=0.2356 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)E220.CB) [> 4.4991 = 7.4985 < 9.7480] w=0.2356 to align # Constraint # added constraint: constraint((T0365)L111.CB, (T0365)D194.CB) [> 3.7096 = 6.1827 < 8.0375] w=0.2356 to align # Constraint # added constraint: constraint((T0365)D84.CB, (T0365)M222.CB) [> 2.8043 = 4.6738 < 6.0760] w=0.2356 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)L85.CB) [> 3.6499 = 6.0831 < 7.9081] w=0.2356 to align # Constraint # added constraint: constraint((T0365)W44.CB, (T0365)L111.CB) [> 4.2128 = 7.0214 < 9.1278] w=0.2356 to align # Constraint # added constraint: constraint((T0365)R109.CB, (T0365)F197.CB) [> 3.1447 = 5.2412 < 6.8136] w=0.2356 to align # Constraint # added constraint: constraint((T0365)V155.CB, (T0365)M222.CB) [> 4.5710 = 7.6184 < 9.9038] w=0.2356 to align # Constraint # added constraint: constraint((T0365)I122.CB, (T0365)F184.CB) [> 4.6648 = 7.7747 < 10.1070] w=0.2252 to align # Constraint # added constraint: constraint((T0365)R51.CB, (T0365)I107.CB) [> 3.9151 = 6.5252 < 8.4828] w=0.2252 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)R180.CB) [> 4.3664 = 7.2774 < 9.4606] w=0.2241 to align # Constraint # added constraint: constraint((T0365)F10.CB, (T0365)D62.CB) [> 3.0113 = 5.0189 < 6.5246] w=0.2220 to align # Constraint # added constraint: constraint((T0365)F10.CB, (T0365)K65.CB) [> 2.8771 = 4.7951 < 6.2337] w=0.2220 to align # Constraint # added constraint: constraint((T0365)D27.CB, (T0365)R127.CB) [> 4.0926 = 6.8210 < 8.8673] w=0.2220 to align # Constraint # added constraint: constraint((T0365)N97.CB, (T0365)I168.CB) [> 3.7874 = 6.3123 < 8.2060] w=0.2220 to align # Constraint # added constraint: constraint((T0365)Q60.CB, (T0365)K94.CB) [> 4.5295 = 7.5491 < 9.8138] w=0.2220 to align # Constraint # added constraint: constraint((T0365)K94.CB, (T0365)L221.CB) [> 3.8436 = 6.4060 < 8.3278] w=0.2219 to align # Constraint # added constraint: constraint((T0365)Y26.CB, (T0365)Q126.CB) [> 4.7473 = 7.9121 < 10.2857] w=0.2219 to align # Constraint # added constraint: constraint((T0365)I15.CB, (T0365)Q136.CB) [> 3.8755 = 6.4591 < 8.3969] w=0.2219 to align # Constraint # added constraint: constraint((T0365)P14.CB, (T0365)Q137.CB) [> 3.7301 = 6.2167 < 8.0818] w=0.2219 to align # Constraint # added constraint: constraint((T0365)I162.CB, (T0365)A224.CB) [> 3.4259 = 5.7098 < 7.4227] w=0.2219 to align # Constraint # added constraint: constraint((T0365)A159.CB, (T0365)A224.CB) [> 4.5931 = 7.6551 < 9.9516] w=0.2219 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)L223.CB) [> 4.0463 = 6.7439 < 8.7670] w=0.2219 to align # Constraint # added constraint: constraint((T0365)Q136.CB, (T0365)L223.CB) [> 3.7529 = 6.2548 < 8.1312] w=0.2219 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)L223.CB) [> 3.7266 = 6.2110 < 8.0743] w=0.2219 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)L223.CB) [> 4.0289 = 6.7148 < 8.7293] w=0.2219 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)M222.CB) [> 3.3848 = 5.6413 < 7.3337] w=0.2219 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)L219.CB) [> 3.9421 = 6.5701 < 8.5412] w=0.2219 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)R218.CB) [> 4.1397 = 6.8994 < 8.9693] w=0.2219 to align # Constraint # added constraint: constraint((T0365)K98.CB, (T0365)L221.CB) [> 4.1678 = 6.9464 < 9.0303] w=0.2219 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)R218.CB) [> 4.6479 = 7.7465 < 10.0705] w=0.2219 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)Y199.CB) [> 3.3767 = 5.6279 < 7.3163] w=0.2114 to align # Constraint # added constraint: constraint((T0365)F184.CB, (T0365)D194.CB) [> 2.8646 = 4.7743 < 6.2065] w=0.2100 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)Y199.CB) [> 3.5469 = 5.9115 < 7.6850] w=0.2031 to align # Constraint # added constraint: constraint((T0365)R109.CB, (T0365)Y199.CB) [> 3.1080 = 5.1800 < 6.7340] w=0.2027 to align # Constraint # added constraint: constraint((T0365)R109.CB, (T0365)L198.CB) [> 3.4683 = 5.7805 < 7.5147] w=0.2027 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)I139.CB) [> 3.4672 = 5.7787 < 7.5124] w=0.2014 to align # Constraint # added constraint: constraint((T0365)R69.CB, (T0365)L85.CB) [> 4.0722 = 6.7871 < 8.8232] w=0.2008 to align # Constraint # added constraint: constraint((T0365)L31.CB, (T0365)I50.CB) [> 3.9753 = 6.6256 < 8.6132] w=0.1985 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)I68.CB) [> 3.5103 = 5.8506 < 7.6057] w=0.1905 to align # Constraint # added constraint: constraint((T0365)L117.CB, (T0365)L183.CB) [> 4.4217 = 7.3695 < 9.5803] w=0.1901 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)T201.CB) [> 4.0454 = 6.7424 < 8.7651] w=0.1859 to align # Constraint # added constraint: constraint((T0365)L186.CB, (T0365)V195.CB) [> 2.6267 = 4.3778 < 5.6911] w=0.1851 to align # Constraint # added constraint: constraint((T0365)L117.CB, (T0365)L198.CB) [> 4.4110 = 7.3516 < 9.5571] w=0.1851 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)C128.CB) [> 3.5769 = 5.9614 < 7.7499] w=0.1819 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)F121.CB) [> 3.7012 = 6.1686 < 8.0192] w=0.1801 to align # Constraint # added constraint: constraint((T0365)Y26.CB, (T0365)D166.CB) [> 3.9218 = 6.5363 < 8.4972] w=0.1776 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)C128.CB) [> 4.3260 = 7.2100 < 9.3730] w=0.1776 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)Y124.CB) [> 3.5466 = 5.9110 < 7.6843] w=0.1776 to align # Constraint # added constraint: constraint((T0365)Q19.CB, (T0365)I177.CB) [> 4.7534 = 7.9224 < 10.2991] w=0.1776 to align # Constraint # added constraint: constraint((T0365)L7.CB, (T0365)R127.CB) [> 4.5637 = 7.6063 < 9.8881] w=0.1776 to align # Constraint # added constraint: constraint((T0365)L7.CB, (T0365)Y124.CB) [> 3.5383 = 5.8972 < 7.6664] w=0.1776 to align # Constraint # added constraint: constraint((T0365)V80.CB, (T0365)V132.CB) [> 3.5197 = 5.8662 < 7.6261] w=0.1776 to align # Constraint # added constraint: constraint((T0365)M78.CB, (T0365)Q136.CB) [> 4.6636 = 7.7727 < 10.1046] w=0.1776 to align # Constraint # added constraint: constraint((T0365)L72.CB, (T0365)Q136.CB) [> 3.7007 = 6.1678 < 8.0182] w=0.1776 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)A148.CB) [> 3.7957 = 6.3261 < 8.2239] w=0.1775 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)V132.CB) [> 3.4122 = 5.6870 < 7.3931] w=0.1745 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)E220.CB) [> 4.3145 = 7.1908 < 9.3481] w=0.1741 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)F150.CB) [> 3.7796 = 6.2994 < 8.1892] w=0.1715 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)Y124.CB) [> 3.5800 = 5.9668 < 7.7568] w=0.1715 to align # Constraint # added constraint: constraint((T0365)L72.CB, (T0365)E81.CB) [> 4.2991 = 7.1652 < 9.3147] w=0.1648 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)V80.CB) [> 3.9358 = 6.5597 < 8.5276] w=0.1637 to align # Constraint # added constraint: constraint((T0365)L18.CB, (T0365)P79.CB) [> 4.3331 = 7.2219 < 9.3885] w=0.1570 to align # Constraint # added constraint: constraint((T0365)I68.CB, (T0365)P79.CB) [> 4.1981 = 6.9968 < 9.0958] w=0.1570 to align # Constraint # added constraint: constraint((T0365)R69.CB, (T0365)P79.CB) [> 4.0359 = 6.7264 < 8.7444] w=0.1570 to align # Constraint # added constraint: constraint((T0365)E81.CB, (T0365)R225.CB) [> 4.4973 = 7.4955 < 9.7442] w=0.1570 to align # Constraint # added constraint: constraint((T0365)R82.CB, (T0365)L223.CB) [> 4.7226 = 7.8710 < 10.2324] w=0.1570 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)E203.CB) [> 4.2781 = 7.1301 < 9.2691] w=0.1570 to align # Constraint # added constraint: constraint((T0365)D84.CB, (T0365)L221.CB) [> 3.8902 = 6.4836 < 8.4287] w=0.1570 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)L211.CB) [> 4.6109 = 7.6848 < 9.9902] w=0.1570 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)A212.CB) [> 2.7073 = 4.5121 < 5.8658] w=0.1570 to align # Constraint # added constraint: constraint((T0365)C28.CB, (T0365)L64.CB) [> 3.4742 = 5.7903 < 7.5274] w=0.1512 to align # Constraint # added constraint: constraint((T0365)L72.CB, (T0365)I102.CB) [> 3.9415 = 6.5691 < 8.5399] w=0.1497 to align # Constraint # added constraint: constraint((T0365)D23.CB, (T0365)L72.CB) [> 3.1446 = 5.2410 < 6.8134] w=0.1480 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)Q176.CB) [> 3.9365 = 6.5609 < 8.5292] w=0.1480 to align # Constraint # added constraint: constraint((T0365)R109.CB, (T0365)M196.CB) [> 4.6494 = 7.7491 < 10.0738] w=0.1465 to align # Constraint # added constraint: constraint((T0365)Q110.CB, (T0365)V195.CB) [> 4.6632 = 7.7720 < 10.1035] w=0.1465 to align # Constraint # added constraint: constraint((T0365)L111.CB, (T0365)M196.CB) [> 3.0714 = 5.1190 < 6.6547] w=0.1465 to align # Constraint # added constraint: constraint((T0365)G108.CA, (T0365)L117.CB) [> 4.2433 = 7.0721 < 9.1938] w=0.1439 to align # Constraint # added constraint: constraint((T0365)L64.CB, (T0365)L88.CB) [> 3.8358 = 6.3930 < 8.3109] w=0.1345 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)V132.CB) [> 3.5349 = 5.8914 < 7.6589] w=0.1321 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)C128.CB) [> 3.1995 = 5.3326 < 6.9324] w=0.1321 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)F121.CB) [> 3.5875 = 5.9792 < 7.7730] w=0.1321 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)A148.CB) [> 3.4591 = 5.7651 < 7.4946] w=0.1286 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)V138.CB) [> 4.1480 = 6.9134 < 8.9874] w=0.1245 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)I139.CB) [> 4.5252 = 7.5420 < 9.8046] w=0.1221 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)T201.CB) [> 4.0414 = 6.7357 < 8.7564] w=0.1213 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)F121.CB) [> 4.0628 = 6.7714 < 8.8028] w=0.1184 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)A131.CB) [> 4.4953 = 7.4921 < 9.7398] w=0.1184 to align # Constraint # added constraint: constraint((T0365)V80.CB, (T0365)Y124.CB) [> 3.7857 = 6.3095 < 8.2024] w=0.1183 to align # Constraint # added constraint: constraint((T0365)P73.CB, (T0365)L85.CB) [> 4.4505 = 7.4176 < 9.6428] w=0.1153 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)L72.CB) [> 3.8600 = 6.4334 < 8.3634] w=0.1153 to align # Constraint # added constraint: constraint((T0365)P73.CB, (T0365)R82.CB) [> 4.5752 = 7.6253 < 9.9129] w=0.1120 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)L145.CB) [> 3.9932 = 6.6553 < 8.6519] w=0.1114 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)I102.CB) [> 3.6166 = 6.0277 < 7.8360] w=0.1058 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)T201.CB) [> 3.5525 = 5.9208 < 7.6970] w=0.1055 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)L145.CB) [> 3.7341 = 6.2235 < 8.0906] w=0.1054 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)L76.CB) [> 3.9222 = 6.5370 < 8.4981] w=0.1043 to align # Constraint # added constraint: constraint((T0365)I15.CB, (T0365)T71.CB) [> 4.3223 = 7.2038 < 9.3650] w=0.1033 to align # Constraint # added constraint: constraint((T0365)M196.CB, (T0365)V215.CB) [> 2.7988 = 4.6646 < 6.0640] w=0.1021 to align # Constraint # added constraint: constraint((T0365)P79.CB, (T0365)L88.CB) [> 4.4319 = 7.3865 < 9.6024] w=0.1017 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)V193.CB) [> 3.2563 = 5.4272 < 7.0553] w=0.0977 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)A135.CB) [> 3.2904 = 5.4840 < 7.1292] w=0.0964 to align # Constraint # added constraint: constraint((T0365)E81.CB, (T0365)R153.CB) [> 4.4406 = 7.4010 < 9.6213] w=0.0940 to align # Constraint # added constraint: constraint((T0365)L76.CB, (T0365)Y124.CB) [> 4.1117 = 6.8528 < 8.9087] w=0.0929 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)L146.CB) [> 3.4499 = 5.7499 < 7.4749] w=0.0883 to align # Constraint # added constraint: constraint((T0365)E67.CB, (T0365)Q182.CB) [> 4.1274 = 6.8790 < 8.9427] w=0.0879 to align # Constraint # added constraint: constraint((T0365)G75.CA, (T0365)L85.CB) [> 2.3053 = 3.8421 < 4.9948] w=0.0875 to align # Constraint # added constraint: constraint((T0365)L76.CB, (T0365)L85.CB) [> 4.2605 = 7.1008 < 9.2311] w=0.0875 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)I139.CB) [> 4.2077 = 7.0128 < 9.1166] w=0.0846 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)Q176.CB) [> 3.5117 = 5.8528 < 7.6087] w=0.0844 to align # Constraint # added constraint: constraint((T0365)F77.CB, (T0365)V158.CB) [> 4.1568 = 6.9281 < 9.0065] w=0.0842 to align # Constraint # added constraint: constraint((T0365)V9.CB, (T0365)L145.CB) [> 4.6268 = 7.7113 < 10.0248] w=0.0830 to align # Constraint # added constraint: constraint((T0365)V9.CB, (T0365)I139.CB) [> 4.0886 = 6.8143 < 8.8586] w=0.0830 to align # Constraint # added constraint: constraint((T0365)Q136.CB, (T0365)L211.CB) [> 4.5409 = 7.5681 < 9.8386] w=0.0830 to align # Constraint # added constraint: constraint((T0365)A38.CB, (T0365)M78.CB) [> 3.1823 = 5.3038 < 6.8949] w=0.0787 to align # Constraint # added constraint: constraint((T0365)M22.CB, (T0365)F77.CB) [> 2.6968 = 4.4947 < 5.8432] w=0.0787 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)F77.CB) [> 3.5479 = 5.9131 < 7.6870] w=0.0787 to align # Constraint # added constraint: constraint((T0365)L18.CB, (T0365)M78.CB) [> 4.6546 = 7.7576 < 10.0849] w=0.0787 to align # Constraint # added constraint: constraint((T0365)L18.CB, (T0365)F77.CB) [> 1.7723 = 2.9538 < 3.8400] w=0.0787 to align # Constraint # added constraint: constraint((T0365)L18.CB, (T0365)L76.CB) [> 3.5227 = 5.8713 < 7.6326] w=0.0787 to align # Constraint # added constraint: constraint((T0365)V195.CB, (T0365)R214.CB) [> 2.9388 = 4.8981 < 6.3675] w=0.0787 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)L211.CB) [> 4.6109 = 7.6848 < 9.9902] w=0.0785 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)P120.CB) [> 3.5697 = 5.9495 < 7.7343] w=0.0772 to align # Constraint # added constraint: constraint((T0365)G108.CA, (T0365)L190.CB) [> 4.7395 = 7.8991 < 10.2689] w=0.0772 to align # Constraint # added constraint: constraint((T0365)Q136.CB, (T0365)L221.CB) [> 4.1677 = 6.9461 < 9.0300] w=0.0772 to align # Constraint # added constraint: constraint((T0365)Q136.CB, (T0365)M222.CB) [> 3.5911 = 5.9851 < 7.7807] w=0.0772 to align # Constraint # added constraint: constraint((T0365)M161.CB, (T0365)M222.CB) [> 4.5274 = 7.5457 < 9.8094] w=0.0772 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)A209.CB) [> 3.4175 = 5.6958 < 7.4046] w=0.0772 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)M222.CB) [> 2.7182 = 4.5304 < 5.8895] w=0.0772 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)L211.CB) [> 4.7648 = 7.9414 < 10.3238] w=0.0772 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)L190.CB) [> 3.5377 = 5.8962 < 7.6651] w=0.0740 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)G75.CA) [> 3.4289 = 5.7148 < 7.4292] w=0.0722 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)Q176.CB) [> 4.0456 = 6.7427 < 8.7655] w=0.0688 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)A135.CB) [> 3.9138 = 6.5230 < 8.4799] w=0.0660 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)A131.CB) [> 3.0961 = 5.1602 < 6.7083] w=0.0660 to align # Constraint # added constraint: constraint((T0365)I50.CB, (T0365)Y124.CB) [> 3.3224 = 5.5374 < 7.1986] w=0.0660 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)A131.CB) [> 3.9138 = 6.5230 < 8.4799] w=0.0660 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)P192.CB) [> 4.7789 = 7.9649 < 10.3543] w=0.0643 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)V138.CB) [> 3.8930 = 6.4884 < 8.4349] w=0.0643 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)V138.CB) [> 3.0000 = 4.9999 < 6.4999] w=0.0643 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)V138.CB) [> 4.0472 = 6.7453 < 8.7689] w=0.0643 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)L31.CB) [> 3.0582 = 5.0970 < 6.6260] w=0.0637 to align # Constraint # added constraint: constraint((T0365)I6.CB, (T0365)P17.CB) [> 3.7901 = 6.3169 < 8.2120] w=0.0592 to align # Constraint # added constraint: constraint((T0365)R82.CB, (T0365)Q136.CB) [> 3.8788 = 6.4646 < 8.4040] w=0.0561 to align # Constraint # added constraint: constraint((T0365)F77.CB, (T0365)I139.CB) [> 4.2030 = 7.0050 < 9.1065] w=0.0561 to align # Constraint # added constraint: constraint((T0365)L186.CB, (T0365)F197.CB) [> 3.2474 = 5.4123 < 7.0360] w=0.0561 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)S217.CB) [> 4.3503 = 7.2505 < 9.4256] w=0.0561 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)D210.CB) [> 4.4973 = 7.4955 < 9.7442] w=0.0561 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)A209.CB) [> 2.6654 = 4.4423 < 5.7750] w=0.0561 to align # Constraint # added constraint: constraint((T0365)L179.CB, (T0365)A224.CB) [> 2.8500 = 4.7501 < 6.1751] w=0.0522 to align # Constraint # added constraint: constraint((T0365)L179.CB, (T0365)L223.CB) [> 3.1423 = 5.2371 < 6.8083] w=0.0522 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)V138.CB) [> 3.8284 = 6.3808 < 8.2950] w=0.0468 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)R153.CB) [> 3.9154 = 6.5257 < 8.4833] w=0.0454 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)L146.CB) [> 4.3481 = 7.2468 < 9.4208] w=0.0454 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)L146.CB) [> 3.7933 = 6.3222 < 8.2189] w=0.0454 to align # Constraint # added constraint: constraint((T0365)M78.CB, (T0365)R109.CB) [> 4.6156 = 7.6927 < 10.0005] w=0.0454 to align # Constraint # added constraint: constraint((T0365)L76.CB, (T0365)G108.CA) [> 3.6223 = 6.0371 < 7.8482] w=0.0454 to align # Constraint # added constraint: constraint((T0365)V3.CB, (T0365)L112.CB) [> 4.7732 = 7.9553 < 10.3419] w=0.0437 to align # Constraint # added constraint: constraint((T0365)S5.CB, (T0365)L112.CB) [> 3.4624 = 5.7707 < 7.5019] w=0.0437 to align # Constraint # added constraint: constraint((T0365)I6.CB, (T0365)P114.CB) [> 2.8990 = 4.8316 < 6.2811] w=0.0437 to align # Constraint # added constraint: constraint((T0365)P14.CB, (T0365)V193.CB) [> 4.6789 = 7.7982 < 10.1377] w=0.0437 to align # Constraint # added constraint: constraint((T0365)C128.CB, (T0365)D173.CB) [> 2.2987 = 3.8312 < 4.9805] w=0.0437 to align # Constraint # added constraint: constraint((T0365)L112.CB, (T0365)F121.CB) [> 4.0913 = 6.8188 < 8.8645] w=0.0437 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)R153.CB) [> 3.6038 = 6.0063 < 7.8082] w=0.0425 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)R109.CB) [> 4.4670 = 7.4450 < 9.6785] w=0.0415 to align # Constraint # added constraint: constraint((T0365)V9.CB, (T0365)I102.CB) [> 3.9461 = 6.5768 < 8.5498] w=0.0415 to align # Constraint # added constraint: constraint((T0365)R109.CB, (T0365)Q176.CB) [> 4.2593 = 7.0989 < 9.2285] w=0.0415 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)A135.CB) [> 4.7637 = 7.9396 < 10.3214] w=0.0415 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)I50.CB) [> 1.8754 = 3.1256 < 4.0633] w=0.0394 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)L186.CB) [> 3.7423 = 6.2371 < 8.1083] w=0.0394 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)N191.CB) [> 4.3014 = 7.1691 < 9.3198] w=0.0394 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)A131.CB) [> 3.0213 = 5.0355 < 6.5462] w=0.0321 to align # Constraint # added constraint: constraint((T0365)G108.CA, (T0365)L146.CB) [> 4.7873 = 7.9788 < 10.3724] w=0.0321 to align # Constraint # added constraint: constraint((T0365)F77.CB, (T0365)L146.CB) [> 4.1773 = 6.9622 < 9.0509] w=0.0281 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)S217.CB) [> 4.3503 = 7.2505 < 9.4256] w=0.0281 to align # Constraint # added constraint: constraint((T0365)V9.CB, (T0365)A131.CB) [> 2.9228 = 4.8714 < 6.3328] w=0.0261 to align # Constraint # added constraint: constraint((T0365)P14.CB, (T0365)G75.CA) [> 3.8535 = 6.4225 < 8.3492] w=0.0261 to align # Constraint # added constraint: constraint((T0365)P14.CB, (T0365)L76.CB) [> 4.0066 = 6.6776 < 8.6809] w=0.0261 to align # Constraint # added constraint: constraint((T0365)V3.CB, (T0365)L18.CB) [> 4.7053 = 7.8421 < 10.1948] w=0.0261 to align # Constraint # added constraint: constraint((T0365)V3.CB, (T0365)M22.CB) [> 3.5720 = 5.9533 < 7.7393] w=0.0261 to align # Constraint # added constraint: constraint((T0365)I6.CB, (T0365)L18.CB) [> 3.7692 = 6.2820 < 8.1666] w=0.0261 to align # Constraint # added constraint: constraint((T0365)I6.CB, (T0365)M22.CB) [> 4.0065 = 6.6775 < 8.6807] w=0.0261 to align # Constraint # added constraint: constraint((T0365)I6.CB, (T0365)R153.CB) [> 3.4206 = 5.7010 < 7.4113] w=0.0261 to align # Constraint # added constraint: constraint((T0365)L7.CB, (T0365)M22.CB) [> 4.4311 = 7.3852 < 9.6008] w=0.0261 to align # Constraint # added constraint: constraint((T0365)Y124.CB, (T0365)A135.CB) [> 4.1839 = 6.9732 < 9.0652] w=0.0261 to align # Constraint # added constraint: constraint((T0365)Q176.CB, (T0365)A224.CB) [> 4.7058 = 7.8430 < 10.1959] w=0.0261 to align # Constraint # added constraint: constraint((T0365)P79.CB, (T0365)I113.CB) [> 4.5755 = 7.6258 < 9.9135] w=0.0261 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)L190.CB) [> 4.1523 = 6.9205 < 8.9966] w=0.0236 to align # Constraint # added constraint: constraint((T0365)I113.CB, (T0365)M222.CB) [> 4.0544 = 6.7573 < 8.7844] w=0.0234 to align # Constraint # added constraint: constraint((T0365)M196.CB, (T0365)M222.CB) [> 4.1325 = 6.8874 < 8.9537] w=0.0234 to align # Constraint # added constraint: constraint((T0365)V193.CB, (T0365)M222.CB) [> 2.9675 = 4.9459 < 6.4296] w=0.0234 to align # Constraint # added constraint: constraint((T0365)P192.CB, (T0365)M222.CB) [> 3.4645 = 5.7741 < 7.5063] w=0.0234 to align # Constraint # added constraint: constraint((T0365)L85.CB, (T0365)V138.CB) [> 4.6636 = 7.7727 < 10.1045] w=0.0234 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)R153.CB) [> 3.8515 = 6.4191 < 8.3449] w=0.0212 to align # Constraint # added constraint: constraint((T0365)L76.CB, (T0365)I102.CB) [> 4.2787 = 7.1311 < 9.2705] w=0.0203 to align # Constraint # added constraint: constraint((T0365)G75.CA, (T0365)Y124.CB) [> 4.7021 = 7.8369 < 10.1880] w=0.0203 to align # Constraint # added constraint: constraint((T0365)F121.CB, (T0365)L146.CB) [> 4.1033 = 6.8388 < 8.8905] w=0.0203 to align # Constraint # added constraint: constraint((T0365)V138.CB, (T0365)L190.CB) [> 4.1530 = 6.9217 < 8.9983] w=0.0203 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)P79.CB) [> 3.0117 = 5.0196 < 6.5255] w=0.0157 to align # Constraint # added constraint: constraint((T0365)H21.CB, (T0365)M78.CB) [> 4.7453 = 7.9088 < 10.2815] w=0.0157 to align # Constraint # added constraint: constraint((T0365)A135.CB, (T0365)P192.CB) [> 4.3302 = 7.2170 < 9.3821] w=0.0157 to align # Constraint # added constraint: constraint((T0365)A131.CB, (T0365)P192.CB) [> 4.1853 = 6.9755 < 9.0681] w=0.0157 to align # Constraint # added constraint: constraint((T0365)I102.CB, (T0365)V132.CB) [> 4.4638 = 7.4397 < 9.6715] w=0.0157 to align # Constraint # added constraint: constraint((T0365)I139.CB, (T0365)E187.CB) [> 4.1853 = 6.9755 < 9.0682] w=0.0079 to align # Constraint # added constraint: constraint((T0365)V132.CB, (T0365)P192.CB) [> 4.3302 = 7.2170 < 9.3821] w=0.0079 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0365/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0365/decoys/ # ReadConformPDB reading from PDB file chimera-11-10.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-8-7.gromacs0.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-8-7.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-8-7.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 226 in servers/POMYSL_TS2.pdb.gz # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 WARNING: atom 1 has residue number 33 < previous residue 226 in servers/POMYSL_TS5.pdb.gz # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 9 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 9 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 186 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0365)E141.CA and (T0365)A148.CA only 0.000 apart, marking (T0365)E141.CA as missing WARNING: atoms too close: (T0365)L142.CA and (T0365)G149.CA only 0.000 apart, marking (T0365)L142.CA as missing WARNING: atoms too close: (T0365)D143.CA and (T0365)F150.CA only 0.000 apart, marking (T0365)F150.CA as missing # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 2 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 16 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0365)D84.O and (T0365)L85.N only 0.000 apart, marking (T0365)L85.N as missing # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0365)R66.O and (T0365)E67.N only 0.000 apart, marking (T0365)E67.N as missing # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0365)D45.O and (T0365)D46.N only 0.000 apart, marking (T0365)D46.N as missing # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 WARNING: atom 1 has residue number 9 < previous residue 226 in servers/nFOLD_TS5.pdb.gz # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0365 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 1.0685 model score 0.8636 model score 0.8626 model score 0.8617 model score 1.8950 model score 1.7048 model score 2.4517 model score 2.1301 model score 2.3613 model score 2.1241 model score 1.7615 model score 1.9929 model score 2.0405 model score 1.3395 model score 2.8462 model score 2.3236 model score 1.9366 model score 2.8830 model score 0.4293 model score 1.0325 model score 0.4558 model score 1.0227 model score 0.4624 model score 1.4053 model score 1.8145 model score 1.5519 model score 1.8247 model score 1.7690 model score 0.4074 model score 0.4674 model score 2.0224 model score 0.2920 model score 0.3099 model score 0.4768 model score 0.4269 model score 0.4786 model score 1.0914 model score 0.4114 model score 0.4422 model score 0.5584 model score 2.6574 model score 1.7381 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.2424 model score 0.6097 model score 0.5808 model score 0.5461 model score 0.6209 model score 0.4261 model score 0.3099 model score 0.4269 model score 0.2920 model score 0.4786 model score 0.6141 model score 0.6067 model score 0.8597 model score 0.9421 model score 0.4293 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.4992 model score 2.5591 model score 2.4481 model score 2.4248 model score 2.3344 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.5487 model score 0.5138 model score 0.4621 model score 2.2279 model score 0.5714 model score 1.5343 model score 1.4646 model score 2.0633 model score 2.0641 model score 0.5823 model score 0.3393 model score 0.3926 model score 0.6045 model score 0.5228 model score 0.4674 model score 0.4310 model score 0.4499 model score 0.6839 model score 1.9466 model score 2.0256 model score 1.9635 model score 1.6861 model score 0.8627 model score 0.4063 model score 0.6647 model score 1.2452 model score 1.7594 model score 1.2771 model score 0.5985 model score 0.7168 model score 0.3659 model score 0.6122 model score 2.0975 model score 0.7007 model score 0.6618 model score 0.5766 model score 0.6122 model score 2.1396 model score 0.4822 model score 0.5593 model score 0.4764 model score 0.4794 model score 0.4816 model score 0.7804 model score 2.3045 model score 1.8398 model score 2.2764 model score 2.4539 model score 1.9335 model score 0.3876 model score 0.4011 model score 0.3951 model score 0.4010 model score 0.3849 model score 0.3888 model score 0.4019 model score 0.3931 model score 0.3984 model score 0.3979 model score 0.3259 model score 0.3896 model score 0.3853 model score 0.3280 model score 0.3015 model score 0.7425 model score 0.9658 model score 0.7945 model score 0.9384 model score 1.0225 model score 0.7036 model score 0.5477 model score 0.4313 model score 0.5631 model score 0.4477 model score 0.3015 model score 0.4512 model score 0.3642 model score 0.5644 model score 0.3585 model score 0.5537 model score 0.4823 model score 0.5228 model score 0.5913 model score 0.4823 model score 0.9233 model score 0.4684 model score 0.4743 model score 0.5602 model score 0.4684 model score 0.8938 model score 0.4589 model score 0.3948 model score 0.5631 model score 0.5477 model score 0.4313 model score 0.3796 model score 0.3813 model score 0.5105 model score 0.4427 model score 0.4710 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.9277 model score 0.0779 model score 0.1544 model score 0.4289 model score 0.9948 model score 0.3642 model score 0.4512 model score 1.8225 model score 0.7556 model score 2.0573 model score 0.3762 model score 0.7215 model score 1.2672 model score 2.0978 model score 2.1236 model score 0.7804 model score 0.4984 model score 0.4655 model score 2.4159 model score 2.1856 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.3476 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.3185 model score 0.3196 model score 0.4545 model score 0.3109 model score 0.3030 model score 0.5446 model score 0.4869 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.1176 model score 2.0046 model score 2.2513 model score 2.3357 model score 2.1974 model score 2.2820 model score 2.5121 model score 2.4696 model score 2.4900 model score 2.3061 model score 0.4560 model score 2.0263 model score 1.5688 model score 2.1692 model score 2.0503 model score 0.4964 model score 0.3363 model score 1.2560 model score 2.0190 model score 1.2558 model score 0.4429 model score 1.0534 model score 1.1126 model score 1.0127 model score 1.8210 model score 1.8771 model score 0.5475 USE_META, weight: 0.6822 cost: 1.0685 min: 0.0779 max: 2.8830 USE_META, weight: 0.7479 cost: 0.8636 min: 0.0779 max: 2.8830 USE_META, weight: 0.7482 cost: 0.8626 min: 0.0779 max: 2.8830 USE_META, weight: 0.7485 cost: 0.8617 min: 0.0779 max: 2.8830 USE_META, weight: 0.4170 cost: 1.8950 min: 0.0779 max: 2.8830 USE_META, weight: 0.4780 cost: 1.7048 min: 0.0779 max: 2.8830 USE_META, weight: 0.2384 cost: 2.4517 min: 0.0779 max: 2.8830 USE_META, weight: 0.3415 cost: 2.1301 min: 0.0779 max: 2.8830 USE_META, weight: 0.2674 cost: 2.3613 min: 0.0779 max: 2.8830 USE_META, weight: 0.3435 cost: 2.1241 min: 0.0779 max: 2.8830 USE_META, weight: 0.4598 cost: 1.7615 min: 0.0779 max: 2.8830 USE_META, weight: 0.3856 cost: 1.9929 min: 0.0779 max: 2.8830 USE_META, weight: 0.3703 cost: 2.0405 min: 0.0779 max: 2.8830 USE_META, weight: 0.5952 cost: 1.3395 min: 0.0779 max: 2.8830 USE_META, weight: 0.1118 cost: 2.8462 min: 0.0779 max: 2.8830 USE_META, weight: 0.2795 cost: 2.3236 min: 0.0779 max: 2.8830 USE_META, weight: 0.4036 cost: 1.9366 min: 0.0779 max: 2.8830 USE_META, weight: 0.1000 cost: 2.8830 min: 0.0779 max: 2.8830 USE_META, weight: 0.8872 cost: 0.4293 min: 0.0779 max: 2.8830 USE_META, weight: 0.6937 cost: 1.0325 min: 0.0779 max: 2.8830 USE_META, weight: 0.8787 cost: 0.4558 min: 0.0779 max: 2.8830 USE_META, weight: 0.6969 cost: 1.0227 min: 0.0779 max: 2.8830 USE_META, weight: 0.8766 cost: 0.4624 min: 0.0779 max: 2.8830 USE_META, weight: 0.5741 cost: 1.4053 min: 0.0779 max: 2.8830 USE_META, weight: 0.4428 cost: 1.8145 min: 0.0779 max: 2.8830 USE_META, weight: 0.5271 cost: 1.5519 min: 0.0779 max: 2.8830 USE_META, weight: 0.4395 cost: 1.8247 min: 0.0779 max: 2.8830 USE_META, weight: 0.4574 cost: 1.7690 min: 0.0779 max: 2.8830 USE_META, weight: 0.8943 cost: 0.4074 min: 0.0779 max: 2.8830 USE_META, weight: 0.8750 cost: 0.4674 min: 0.0779 max: 2.8830 USE_META, weight: 0.3761 cost: 2.0224 min: 0.0779 max: 2.8830 USE_META, weight: 0.9313 cost: 0.2920 min: 0.0779 max: 2.8830 USE_META, weight: 0.9256 cost: 0.3099 min: 0.0779 max: 2.8830 USE_META, weight: 0.8720 cost: 0.4768 min: 0.0779 max: 2.8830 USE_META, weight: 0.8880 cost: 0.4269 min: 0.0779 max: 2.8830 USE_META, weight: 0.8714 cost: 0.4786 min: 0.0779 max: 2.8830 USE_META, weight: 0.6748 cost: 1.0914 min: 0.0779 max: 2.8830 USE_META, weight: 0.8930 cost: 0.4114 min: 0.0779 max: 2.8830 USE_META, weight: 0.8831 cost: 0.4422 min: 0.0779 max: 2.8830 USE_META, weight: 0.8458 cost: 0.5584 min: 0.0779 max: 2.8830 USE_META, weight: 0.1724 cost: 2.6574 min: 0.0779 max: 2.8830 USE_META, weight: 0.4673 cost: 1.7381 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.9472 cost: 0.2424 min: 0.0779 max: 2.8830 USE_META, weight: 0.8294 cost: 0.6097 min: 0.0779 max: 2.8830 USE_META, weight: 0.8386 cost: 0.5808 min: 0.0779 max: 2.8830 USE_META, weight: 0.8498 cost: 0.5461 min: 0.0779 max: 2.8830 USE_META, weight: 0.8258 cost: 0.6209 min: 0.0779 max: 2.8830 USE_META, weight: 0.8883 cost: 0.4261 min: 0.0779 max: 2.8830 USE_META, weight: 0.9256 cost: 0.3099 min: 0.0779 max: 2.8830 USE_META, weight: 0.8880 cost: 0.4269 min: 0.0779 max: 2.8830 USE_META, weight: 0.9313 cost: 0.2920 min: 0.0779 max: 2.8830 USE_META, weight: 0.8714 cost: 0.4786 min: 0.0779 max: 2.8830 USE_META, weight: 0.8280 cost: 0.6141 min: 0.0779 max: 2.8830 USE_META, weight: 0.8303 cost: 0.6067 min: 0.0779 max: 2.8830 USE_META, weight: 0.7491 cost: 0.8597 min: 0.0779 max: 2.8830 USE_META, weight: 0.7227 cost: 0.9421 min: 0.0779 max: 2.8830 USE_META, weight: 0.8872 cost: 0.4293 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.2231 cost: 2.4992 min: 0.0779 max: 2.8830 USE_META, weight: 0.2039 cost: 2.5591 min: 0.0779 max: 2.8830 USE_META, weight: 0.2395 cost: 2.4481 min: 0.0779 max: 2.8830 USE_META, weight: 0.2470 cost: 2.4248 min: 0.0779 max: 2.8830 USE_META, weight: 0.2760 cost: 2.3344 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.8489 cost: 0.5487 min: 0.0779 max: 2.8830 USE_META, weight: 0.8601 cost: 0.5138 min: 0.0779 max: 2.8830 USE_META, weight: 0.8767 cost: 0.4621 min: 0.0779 max: 2.8830 USE_META, weight: 0.3102 cost: 2.2279 min: 0.0779 max: 2.8830 USE_META, weight: 0.8416 cost: 0.5714 min: 0.0779 max: 2.8830 USE_META, weight: 0.5327 cost: 1.5343 min: 0.0779 max: 2.8830 USE_META, weight: 0.5551 cost: 1.4646 min: 0.0779 max: 2.8830 USE_META, weight: 0.3630 cost: 2.0633 min: 0.0779 max: 2.8830 USE_META, weight: 0.3627 cost: 2.0641 min: 0.0779 max: 2.8830 USE_META, weight: 0.8381 cost: 0.5823 min: 0.0779 max: 2.8830 USE_META, weight: 0.9161 cost: 0.3393 min: 0.0779 max: 2.8830 USE_META, weight: 0.8990 cost: 0.3926 min: 0.0779 max: 2.8830 USE_META, weight: 0.8310 cost: 0.6045 min: 0.0779 max: 2.8830 USE_META, weight: 0.8572 cost: 0.5228 min: 0.0779 max: 2.8830 USE_META, weight: 0.8750 cost: 0.4674 min: 0.0779 max: 2.8830 USE_META, weight: 0.8867 cost: 0.4310 min: 0.0779 max: 2.8830 USE_META, weight: 0.8806 cost: 0.4499 min: 0.0779 max: 2.8830 USE_META, weight: 0.8055 cost: 0.6839 min: 0.0779 max: 2.8830 USE_META, weight: 0.4004 cost: 1.9466 min: 0.0779 max: 2.8830 USE_META, weight: 0.3751 cost: 2.0256 min: 0.0779 max: 2.8830 USE_META, weight: 0.3950 cost: 1.9635 min: 0.0779 max: 2.8830 USE_META, weight: 0.4840 cost: 1.6861 min: 0.0779 max: 2.8830 USE_META, weight: 0.7482 cost: 0.8627 min: 0.0779 max: 2.8830 USE_META, weight: 0.8946 cost: 0.4063 min: 0.0779 max: 2.8830 USE_META, weight: 0.8117 cost: 0.6647 min: 0.0779 max: 2.8830 USE_META, weight: 0.6255 cost: 1.2452 min: 0.0779 max: 2.8830 USE_META, weight: 0.4605 cost: 1.7594 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.8330 cost: 0.5985 min: 0.0779 max: 2.8830 USE_META, weight: 0.7950 cost: 0.7168 min: 0.0779 max: 2.8830 USE_META, weight: 0.9076 cost: 0.3659 min: 0.0779 max: 2.8830 USE_META, weight: 0.8285 cost: 0.6122 min: 0.0779 max: 2.8830 USE_META, weight: 0.3520 cost: 2.0975 min: 0.0779 max: 2.8830 USE_META, weight: 0.8002 cost: 0.7007 min: 0.0779 max: 2.8830 USE_META, weight: 0.8126 cost: 0.6618 min: 0.0779 max: 2.8830 USE_META, weight: 0.8400 cost: 0.5766 min: 0.0779 max: 2.8830 USE_META, weight: 0.8285 cost: 0.6122 min: 0.0779 max: 2.8830 USE_META, weight: 0.3385 cost: 2.1396 min: 0.0779 max: 2.8830 USE_META, weight: 0.8703 cost: 0.4822 min: 0.0779 max: 2.8830 USE_META, weight: 0.8455 cost: 0.5593 min: 0.0779 max: 2.8830 USE_META, weight: 0.8721 cost: 0.4764 min: 0.0779 max: 2.8830 USE_META, weight: 0.8712 cost: 0.4794 min: 0.0779 max: 2.8830 USE_META, weight: 0.8705 cost: 0.4816 min: 0.0779 max: 2.8830 USE_META, weight: 0.7746 cost: 0.7804 min: 0.0779 max: 2.8830 USE_META, weight: 0.2856 cost: 2.3045 min: 0.0779 max: 2.8830 USE_META, weight: 0.4347 cost: 1.8398 min: 0.0779 max: 2.8830 USE_META, weight: 0.2946 cost: 2.2764 min: 0.0779 max: 2.8830 USE_META, weight: 0.2377 cost: 2.4539 min: 0.0779 max: 2.8830 USE_META, weight: 0.4046 cost: 1.9335 min: 0.0779 max: 2.8830 USE_META, weight: 0.9006 cost: 0.3876 min: 0.0779 max: 2.8830 USE_META, weight: 0.8963 cost: 0.4011 min: 0.0779 max: 2.8830 USE_META, weight: 0.8982 cost: 0.3951 min: 0.0779 max: 2.8830 USE_META, weight: 0.8963 cost: 0.4010 min: 0.0779 max: 2.8830 USE_META, weight: 0.9015 cost: 0.3849 min: 0.0779 max: 2.8830 USE_META, weight: 0.9002 cost: 0.3888 min: 0.0779 max: 2.8830 USE_META, weight: 0.8960 cost: 0.4019 min: 0.0779 max: 2.8830 USE_META, weight: 0.8988 cost: 0.3931 min: 0.0779 max: 2.8830 USE_META, weight: 0.8972 cost: 0.3984 min: 0.0779 max: 2.8830 USE_META, weight: 0.8973 cost: 0.3979 min: 0.0779 max: 2.8830 USE_META, weight: 0.9204 cost: 0.3259 min: 0.0779 max: 2.8830 USE_META, weight: 0.9000 cost: 0.3896 min: 0.0779 max: 2.8830 USE_META, weight: 0.9014 cost: 0.3853 min: 0.0779 max: 2.8830 USE_META, weight: 0.9198 cost: 0.3280 min: 0.0779 max: 2.8830 USE_META, weight: 0.9282 cost: 0.3015 min: 0.0779 max: 2.8830 USE_META, weight: 0.7867 cost: 0.7425 min: 0.0779 max: 2.8830 USE_META, weight: 0.7151 cost: 0.9658 min: 0.0779 max: 2.8830 USE_META, weight: 0.7701 cost: 0.7945 min: 0.0779 max: 2.8830 USE_META, weight: 0.7239 cost: 0.9384 min: 0.0779 max: 2.8830 USE_META, weight: 0.6969 cost: 1.0225 min: 0.0779 max: 2.8830 USE_META, weight: 0.7992 cost: 0.7036 min: 0.0779 max: 2.8830 USE_META, weight: 0.8493 cost: 0.5477 min: 0.0779 max: 2.8830 USE_META, weight: 0.8866 cost: 0.4313 min: 0.0779 max: 2.8830 USE_META, weight: 0.8443 cost: 0.5631 min: 0.0779 max: 2.8830 USE_META, weight: 0.8813 cost: 0.4477 min: 0.0779 max: 2.8830 USE_META, weight: 0.9282 cost: 0.3015 min: 0.0779 max: 2.8830 USE_META, weight: 0.8802 cost: 0.4512 min: 0.0779 max: 2.8830 USE_META, weight: 0.9081 cost: 0.3642 min: 0.0779 max: 2.8830 USE_META, weight: 0.8439 cost: 0.5644 min: 0.0779 max: 2.8830 USE_META, weight: 0.9100 cost: 0.3585 min: 0.0779 max: 2.8830 USE_META, weight: 0.8473 cost: 0.5537 min: 0.0779 max: 2.8830 USE_META, weight: 0.8702 cost: 0.4823 min: 0.0779 max: 2.8830 USE_META, weight: 0.8573 cost: 0.5228 min: 0.0779 max: 2.8830 USE_META, weight: 0.8352 cost: 0.5913 min: 0.0779 max: 2.8830 USE_META, weight: 0.8702 cost: 0.4823 min: 0.0779 max: 2.8830 USE_META, weight: 0.7287 cost: 0.9233 min: 0.0779 max: 2.8830 USE_META, weight: 0.8747 cost: 0.4684 min: 0.0779 max: 2.8830 USE_META, weight: 0.8728 cost: 0.4743 min: 0.0779 max: 2.8830 USE_META, weight: 0.8453 cost: 0.5602 min: 0.0779 max: 2.8830 USE_META, weight: 0.8747 cost: 0.4684 min: 0.0779 max: 2.8830 USE_META, weight: 0.7382 cost: 0.8938 min: 0.0779 max: 2.8830 USE_META, weight: 0.8778 cost: 0.4589 min: 0.0779 max: 2.8830 USE_META, weight: 0.8983 cost: 0.3948 min: 0.0779 max: 2.8830 USE_META, weight: 0.8443 cost: 0.5631 min: 0.0779 max: 2.8830 USE_META, weight: 0.8493 cost: 0.5477 min: 0.0779 max: 2.8830 USE_META, weight: 0.8866 cost: 0.4313 min: 0.0779 max: 2.8830 USE_META, weight: 0.9032 cost: 0.3796 min: 0.0779 max: 2.8830 USE_META, weight: 0.9026 cost: 0.3813 min: 0.0779 max: 2.8830 USE_META, weight: 0.8612 cost: 0.5105 min: 0.0779 max: 2.8830 USE_META, weight: 0.8829 cost: 0.4427 min: 0.0779 max: 2.8830 USE_META, weight: 0.8738 cost: 0.4710 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.4065 cost: 1.9277 min: 0.0779 max: 2.8830 USE_META, weight: 1.0000 cost: 0.0779 min: 0.0779 max: 2.8830 USE_META, weight: 0.9754 cost: 0.1544 min: 0.0779 max: 2.8830 USE_META, weight: 0.8874 cost: 0.4289 min: 0.0779 max: 2.8830 USE_META, weight: 0.7058 cost: 0.9948 min: 0.0779 max: 2.8830 USE_META, weight: 0.9081 cost: 0.3642 min: 0.0779 max: 2.8830 USE_META, weight: 0.8802 cost: 0.4512 min: 0.0779 max: 2.8830 USE_META, weight: 0.4402 cost: 1.8225 min: 0.0779 max: 2.8830 USE_META, weight: 0.7826 cost: 0.7556 min: 0.0779 max: 2.8830 USE_META, weight: 0.3649 cost: 2.0573 min: 0.0779 max: 2.8830 USE_META, weight: 0.9043 cost: 0.3762 min: 0.0779 max: 2.8830 USE_META, weight: 0.7935 cost: 0.7215 min: 0.0779 max: 2.8830 USE_META, weight: 0.6184 cost: 1.2672 min: 0.0779 max: 2.8830 USE_META, weight: 0.3519 cost: 2.0978 min: 0.0779 max: 2.8830 USE_META, weight: 0.3436 cost: 2.1236 min: 0.0779 max: 2.8830 USE_META, weight: 0.7746 cost: 0.7804 min: 0.0779 max: 2.8830 USE_META, weight: 0.8651 cost: 0.4984 min: 0.0779 max: 2.8830 USE_META, weight: 0.8756 cost: 0.4655 min: 0.0779 max: 2.8830 USE_META, weight: 0.2499 cost: 2.4159 min: 0.0779 max: 2.8830 USE_META, weight: 0.3238 cost: 2.1856 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.9135 cost: 0.3476 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.9228 cost: 0.3185 min: 0.0779 max: 2.8830 USE_META, weight: 0.9224 cost: 0.3196 min: 0.0779 max: 2.8830 USE_META, weight: 0.8792 cost: 0.4545 min: 0.0779 max: 2.8830 USE_META, weight: 0.9252 cost: 0.3109 min: 0.0779 max: 2.8830 USE_META, weight: 0.9278 cost: 0.3030 min: 0.0779 max: 2.8830 USE_META, weight: 0.8503 cost: 0.5446 min: 0.0779 max: 2.8830 USE_META, weight: 0.8688 cost: 0.4869 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.6152 cost: 1.2771 min: 0.0779 max: 2.8830 USE_META, weight: 0.3456 cost: 2.1176 min: 0.0779 max: 2.8830 USE_META, weight: 0.3818 cost: 2.0046 min: 0.0779 max: 2.8830 USE_META, weight: 0.3027 cost: 2.2513 min: 0.0779 max: 2.8830 USE_META, weight: 0.2756 cost: 2.3357 min: 0.0779 max: 2.8830 USE_META, weight: 0.3199 cost: 2.1974 min: 0.0779 max: 2.8830 USE_META, weight: 0.2928 cost: 2.2820 min: 0.0779 max: 2.8830 USE_META, weight: 0.2190 cost: 2.5121 min: 0.0779 max: 2.8830 USE_META, weight: 0.2326 cost: 2.4696 min: 0.0779 max: 2.8830 USE_META, weight: 0.2261 cost: 2.4900 min: 0.0779 max: 2.8830 USE_META, weight: 0.2851 cost: 2.3061 min: 0.0779 max: 2.8830 USE_META, weight: 0.8787 cost: 0.4560 min: 0.0779 max: 2.8830 USE_META, weight: 0.3749 cost: 2.0263 min: 0.0779 max: 2.8830 USE_META, weight: 0.5216 cost: 1.5688 min: 0.0779 max: 2.8830 USE_META, weight: 0.3290 cost: 2.1692 min: 0.0779 max: 2.8830 USE_META, weight: 0.3672 cost: 2.0503 min: 0.0779 max: 2.8830 USE_META, weight: 0.8657 cost: 0.4964 min: 0.0779 max: 2.8830 USE_META, weight: 0.9171 cost: 0.3363 min: 0.0779 max: 2.8830 USE_META, weight: 0.6220 cost: 1.2560 min: 0.0779 max: 2.8830 USE_META, weight: 0.3772 cost: 2.0190 min: 0.0779 max: 2.8830 USE_META, weight: 0.6221 cost: 1.2558 min: 0.0779 max: 2.8830 USE_META, weight: 0.8829 cost: 0.4429 min: 0.0779 max: 2.8830 USE_META, weight: 0.6870 cost: 1.0534 min: 0.0779 max: 2.8830 USE_META, weight: 0.6680 cost: 1.1126 min: 0.0779 max: 2.8830 USE_META, weight: 0.7001 cost: 1.0127 min: 0.0779 max: 2.8830 USE_META, weight: 0.4407 cost: 1.8210 min: 0.0779 max: 2.8830 USE_META, weight: 0.4227 cost: 1.8771 min: 0.0779 max: 2.8830 USE_META, weight: 0.8493 cost: 0.5475 min: 0.0779 max: 2.8830 USE_EVALUE, weight: 0.3327 eval: 7.6030 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.3327 eval: 7.6030 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.3327 eval: 7.6030 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.3991 eval: 6.8461 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.3991 eval: 6.8461 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.3991 eval: 6.8461 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.2977 eval: 8.0012 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.2977 eval: 8.0012 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.2977 eval: 8.0012 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.5014 eval: 5.6807 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.5014 eval: 5.6807 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.5014 eval: 5.6807 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.4095 eval: 6.7282 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.4095 eval: 6.7282 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.4095 eval: 6.7282 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.5287 eval: 5.3692 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.5287 eval: 5.3692 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.5287 eval: 5.3692 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.9833 eval: 0.1899 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.9833 eval: 0.1899 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.9833 eval: 0.1899 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.5782 eval: 4.8062 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.5782 eval: 4.8062 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.5782 eval: 4.8062 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.9422 eval: 0.6581 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.9422 eval: 0.6581 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.9422 eval: 0.6581 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.2591 eval: 8.4418 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.2591 eval: 8.4418 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.2591 eval: 8.4418 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.8412 eval: 1.8098 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.8412 eval: 1.8098 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.8412 eval: 1.8098 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.5571 eval: 5.0465 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.5571 eval: 5.0465 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.5571 eval: 5.0465 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.9426 eval: 0.6539 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.9426 eval: 0.6539 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.9426 eval: 0.6539 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.1000 eval: 10.2540 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.1000 eval: 10.2540 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.1000 eval: 10.2540 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.6221 eval: 4.3053 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.6221 eval: 4.3053 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.6221 eval: 4.3053 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.2705 eval: 8.3111 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.2705 eval: 8.3111 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.2705 eval: 8.3111 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.7538 eval: 2.8053 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.7538 eval: 2.8053 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.7538 eval: 2.8053 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.3573 eval: 7.3224 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.3573 eval: 7.3224 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 0.3573 eval: 7.3224 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 1.0000 eval: 0.0001 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 1.0000 eval: 0.0001 min: 0.0000 max: 10.2540 USE_EVALUE, weight: 1.0000 eval: 0.0001 min: 0.0000 max: 10.2540 Number of contacts in models: 260 Number of contacts in alignments: 60 NUMB_ALIGNS: 60 Adding 13184 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -356.2945, CN propb: -356.2945 weights: 0.3720 constraints: 445 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 445 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 445 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 12739 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 12739 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 13184 # command: