# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0362/ # command:# Making conformation for sequence T0362 numbered 1 through 151 Created new target T0362 from T0362.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0362/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0362//projects/compbio/experiments/protein-predict/casp7/T0362/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0362//projects/compbio/experiments/protein-predict/casp7/T0362/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0362/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0362/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0362)I69.CB, (T0362)R118.CB) [> 3.0026 = 5.0044 < 6.5057] w=1.0000 to align # Constraint # added constraint: constraint((T0362)F75.CB, (T0362)A113.CB) [> 3.1120 = 5.1867 < 6.7427] w=1.0000 to align # Constraint # added constraint: constraint((T0362)R76.CB, (T0362)A113.CB) [> 3.6965 = 6.1609 < 8.0092] w=1.0000 to align # Constraint # added constraint: constraint((T0362)I79.CB, (T0362)A112.CB) [> 3.2793 = 5.4656 < 7.1052] w=1.0000 to align # Constraint # added constraint: constraint((T0362)A86.CB, (T0362)F105.CB) [> 4.2467 = 7.0778 < 9.2011] w=1.0000 to align # Constraint # added constraint: constraint((T0362)M87.CB, (T0362)F103.CB) [> 3.5875 = 5.9792 < 7.7730] w=1.0000 to align # Constraint # added constraint: constraint((T0362)M87.CB, (T0362)E104.CB) [> 4.3597 = 7.2662 < 9.4461] w=1.0000 to align # Constraint # added constraint: constraint((T0362)S98.CB, (T0362)R118.CB) [> 3.5803 = 5.9672 < 7.7573] w=1.0000 to align # Constraint # added constraint: constraint((T0362)F105.CB, (T0362)H114.CB) [> 4.4238 = 7.3731 < 9.5850] w=1.0000 to align # Constraint # added constraint: constraint((T0362)E104.CB, (T0362)H114.CB) [> 3.2314 = 5.3857 < 7.0014] w=1.0000 to align # Constraint # added constraint: constraint((T0362)F103.CB, (T0362)I117.CB) [> 4.0054 = 6.6756 < 8.6783] w=1.0000 to align # Constraint # added constraint: constraint((T0362)F103.CB, (T0362)H114.CB) [> 4.2595 = 7.0992 < 9.2290] w=1.0000 to align # Constraint # added constraint: constraint((T0362)V101.CB, (T0362)H119.CB) [> 4.0085 = 6.6808 < 8.6851] w=1.0000 to align # Constraint # added constraint: constraint((T0362)V101.CB, (T0362)I117.CB) [> 2.9304 = 4.8839 < 6.3491] w=1.0000 to align # Constraint # added constraint: constraint((T0362)Q100.CB, (T0362)R118.CB) [> 3.0996 = 5.1659 < 6.7157] w=1.0000 to align # Constraint # added constraint: constraint((T0362)Q100.CB, (T0362)I117.CB) [> 4.3182 = 7.1970 < 9.3561] w=1.0000 to align # Constraint # added constraint: constraint((T0362)F99.CB, (T0362)H119.CB) [> 2.7802 = 4.6337 < 6.0239] w=1.0000 to align # Constraint # added constraint: constraint((T0362)F99.CB, (T0362)R118.CB) [> 4.2639 = 7.1065 < 9.2384] w=1.0000 to align # Constraint # added constraint: constraint((T0362)S98.CB, (T0362)H119.CB) [> 3.8629 = 6.4381 < 8.3696] w=1.0000 to align # Constraint # added constraint: constraint((T0362)I68.CB, (T0362)R118.CB) [> 4.3498 = 7.2496 < 9.4245] w=0.9910 to align # Constraint # added constraint: constraint((T0362)L85.CB, (T0362)F105.CB) [> 3.4422 = 5.7370 < 7.4581] w=0.9898 to align # Constraint # added constraint: constraint((T0362)C71.CB, (T0362)I117.CB) [> 2.9202 = 4.8671 < 6.3272] w=0.9898 to align # Constraint # added constraint: constraint((T0362)H70.CB, (T0362)R118.CB) [> 2.7070 = 4.5116 < 5.8651] w=0.9898 to align # Constraint # added constraint: constraint((T0362)I68.CB, (T0362)H119.CB) [> 3.5341 = 5.8902 < 7.6573] w=0.9808 to align # Constraint # added constraint: constraint((T0362)I68.CB, (T0362)I117.CB) [> 3.5506 = 5.9177 < 7.6931] w=0.9808 to align # Constraint # added constraint: constraint((T0362)M87.CB, (T0362)F105.CB) [> 3.1258 = 5.2097 < 6.7726] w=0.9796 to align # Constraint # added constraint: constraint((T0362)E88.CB, (T0362)F103.CB) [> 4.0688 = 6.7813 < 8.8157] w=0.9796 to align # Constraint # added constraint: constraint((T0362)E88.CB, (T0362)E104.CB) [> 2.9513 = 4.9189 < 6.3945] w=0.9796 to align # Constraint # added constraint: constraint((T0362)L89.CB, (T0362)V101.CB) [> 3.3308 = 5.5514 < 7.2168] w=0.9796 to align # Constraint # added constraint: constraint((T0362)L89.CB, (T0362)H102.CB) [> 4.1865 = 6.9775 < 9.0707] w=0.9796 to align # Constraint # added constraint: constraint((T0362)L89.CB, (T0362)F103.CB) [> 2.9423 = 4.9038 < 6.3749] w=0.9796 to align # Constraint # added constraint: constraint((T0362)R90.CB, (T0362)H102.CB) [> 3.0398 = 5.0664 < 6.5863] w=0.9796 to align # Constraint # added constraint: constraint((T0362)P91.CB, (T0362)V101.CB) [> 3.4380 = 5.7300 < 7.4490] w=0.9796 to align # Constraint # added constraint: constraint((T0362)I69.CB, (T0362)H119.CB) [> 3.9767 = 6.6279 < 8.6163] w=0.9716 to align # Constraint # added constraint: constraint((T0362)L85.CB, (T0362)A112.CB) [> 4.1591 = 6.9318 < 9.0113] w=0.9695 to align # Constraint # added constraint: constraint((T0362)A86.CB, (T0362)R106.CB) [> 2.9302 = 4.8837 < 6.3488] w=0.9692 to align # Constraint # added constraint: constraint((T0362)I79.CB, (T0362)C107.CB) [> 3.4940 = 5.8233 < 7.5703] w=0.9692 to align # Constraint # added constraint: constraint((T0362)F103.CB, (T0362)A115.CB) [> 2.7859 = 4.6432 < 6.0362] w=0.9692 to align # Constraint # added constraint: constraint((T0362)H102.CB, (T0362)L116.CB) [> 3.4169 = 5.6948 < 7.4033] w=0.9692 to align # Constraint # added constraint: constraint((T0362)V101.CB, (T0362)L116.CB) [> 4.2333 = 7.0555 < 9.1721] w=0.9692 to align # Constraint # added constraint: constraint((T0362)Q100.CB, (T0362)L116.CB) [> 3.8192 = 6.3653 < 8.2749] w=0.9692 to align # Constraint # added constraint: constraint((T0362)D74.CB, (T0362)A113.CB) [> 3.8526 = 6.4211 < 8.3474] w=0.9692 to align # Constraint # added constraint: constraint((T0362)A73.CB, (T0362)A115.CB) [> 2.5877 = 4.3128 < 5.6066] w=0.9692 to align # Constraint # added constraint: constraint((T0362)R76.CB, (T0362)I111.CB) [> 3.4259 = 5.7099 < 7.4228] w=0.9692 to align # Constraint # added constraint: constraint((T0362)R77.CB, (T0362)Q110.CB) [> 3.5603 = 5.9339 < 7.7141] w=0.9692 to align # Constraint # added constraint: constraint((T0362)I69.CB, (T0362)S98.CB) [> 4.2283 = 7.0472 < 9.1614] w=0.9685 to align # Constraint # added constraint: constraint((T0362)F75.CB, (T0362)A112.CB) [> 4.3543 = 7.2571 < 9.4342] w=0.9662 to align # Constraint # added constraint: constraint((T0362)H70.CB, (T0362)I117.CB) [> 4.1786 = 6.9644 < 9.0537] w=0.9593 to align # Constraint # added constraint: constraint((T0362)L85.CB, (T0362)R106.CB) [> 4.1939 = 6.9899 < 9.0868] w=0.9591 to align # Constraint # added constraint: constraint((T0362)C71.CB, (T0362)L116.CB) [> 4.2309 = 7.0516 < 9.1670] w=0.9590 to align # Constraint # added constraint: constraint((T0362)C71.CB, (T0362)A115.CB) [> 3.7740 = 6.2900 < 8.1770] w=0.9590 to align # Constraint # added constraint: constraint((T0362)E92.CB, (T0362)V101.CB) [> 3.9156 = 6.5260 < 8.4838] w=0.9577 to align # Constraint # added constraint: constraint((T0362)E92.CB, (T0362)H102.CB) [> 3.1421 = 5.2368 < 6.8078] w=0.9577 to align # Constraint # added constraint: constraint((T0362)R90.CB, (T0362)V101.CB) [> 4.1120 = 6.8534 < 8.9094] w=0.9476 to align # Constraint # added constraint: constraint((T0362)A73.CB, (T0362)A113.CB) [> 3.6159 = 6.0265 < 7.8345] w=0.9454 to align # Constraint # added constraint: constraint((T0362)H102.CB, (T0362)A115.CB) [> 4.4665 = 7.4441 < 9.6773] w=0.9387 to align # Constraint # added constraint: constraint((T0362)L85.CB, (T0362)C107.CB) [> 3.6086 = 6.0143 < 7.8187] w=0.9387 to align # Constraint # added constraint: constraint((T0362)Q72.CB, (T0362)A115.CB) [> 3.7280 = 6.2133 < 8.0773] w=0.9387 to align # Constraint # added constraint: constraint((T0362)A73.CB, (T0362)H114.CB) [> 4.2191 = 7.0318 < 9.1414] w=0.9385 to align # Constraint # added constraint: constraint((T0362)E104.CB, (T0362)A113.CB) [> 4.4488 = 7.4146 < 9.6390] w=0.9385 to align # Constraint # added constraint: constraint((T0362)P67.CB, (T0362)H119.CB) [> 4.0114 = 6.6856 < 8.6913] w=0.9357 to align # Constraint # added constraint: constraint((T0362)F103.CB, (T0362)L116.CB) [> 4.4007 = 7.3344 < 9.5348] w=0.9355 to align # Constraint # added constraint: constraint((T0362)Q72.CB, (T0362)L116.CB) [> 3.0193 = 5.0322 < 6.5418] w=0.9305 to align # Constraint # added constraint: constraint((T0362)W37.CB, (T0362)I117.CB) [> 3.3442 = 5.5737 < 7.2459] w=0.9305 to align # Constraint # added constraint: constraint((T0362)S98.CB, (T0362)L120.CB) [> 3.1807 = 5.3012 < 6.8916] w=0.9285 to align # Constraint # added constraint: constraint((T0362)W37.CB, (T0362)L89.CB) [> 3.3108 = 5.5181 < 7.1735] w=0.9231 to align # Constraint # added constraint: constraint((T0362)L29.CB, (T0362)F105.CB) [> 3.7416 = 6.2360 < 8.1068] w=0.9185 to align # Constraint # added constraint: constraint((T0362)E88.CB, (T0362)R106.CB) [> 4.3608 = 7.2680 < 9.4484] w=0.9181 to align # Constraint # added constraint: constraint((T0362)L66.CB, (T0362)H119.CB) [> 2.8143 = 4.6906 < 6.0978] w=0.9162 to align # Constraint # added constraint: constraint((T0362)D74.CB, (T0362)H114.CB) [> 3.0557 = 5.0928 < 6.6206] w=0.9077 to align # Constraint # added constraint: constraint((T0362)C33.CB, (T0362)F103.CB) [> 2.7977 = 4.6629 < 6.0617] w=0.9026 to align # Constraint # added constraint: constraint((T0362)I69.CB, (T0362)L120.CB) [> 3.0723 = 5.1205 < 6.6567] w=0.9001 to align # Constraint # added constraint: constraint((T0362)C71.CB, (T0362)R118.CB) [> 4.4215 = 7.3692 < 9.5799] w=0.8999 to align # Constraint # added constraint: constraint((T0362)S40.CB, (T0362)L89.CB) [> 2.8628 = 4.7714 < 6.2028] w=0.8988 to align # Constraint # added constraint: constraint((T0362)N97.CB, (T0362)L120.CB) [> 3.8059 = 6.3431 < 8.2460] w=0.8979 to align # Constraint # added constraint: constraint((T0362)W37.CB, (T0362)V101.CB) [> 3.0427 = 5.0711 < 6.5925] w=0.8924 to align # Constraint # added constraint: constraint((T0362)C33.CB, (T0362)M87.CB) [> 3.6098 = 6.0164 < 7.8213] w=0.8923 to align # Constraint # added constraint: constraint((T0362)P67.CB, (T0362)L120.CB) [> 3.1944 = 5.3240 < 6.9212] w=0.8868 to align # Constraint # added constraint: constraint((T0362)P91.CB, (T0362)Q100.CB) [> 4.4440 = 7.4066 < 9.6286] w=0.8832 to align # Constraint # added constraint: constraint((T0362)S36.CB, (T0362)L89.CB) [> 2.8151 = 4.6919 < 6.0994] w=0.8823 to align # Constraint # added constraint: constraint((T0362)R77.CB, (T0362)I111.CB) [> 4.3179 = 7.1965 < 9.3555] w=0.8771 to align # Constraint # added constraint: constraint((T0362)R76.CB, (T0362)H114.CB) [> 4.1821 = 6.9702 < 9.0613] w=0.8769 to align # Constraint # added constraint: constraint((T0362)W32.CB, (T0362)M87.CB) [> 3.2287 = 5.3811 < 6.9955] w=0.8721 to align # Constraint # added constraint: constraint((T0362)C33.CB, (T0362)I117.CB) [> 4.1358 = 6.8930 < 8.9608] w=0.8648 to align # Constraint # added constraint: constraint((T0362)L66.CB, (T0362)L120.CB) [> 4.0170 = 6.6950 < 8.7035] w=0.8641 to align # Constraint # added constraint: constraint((T0362)D83.CB, (T0362)C107.CB) [> 3.3741 = 5.6235 < 7.3106] w=0.8634 to align # Constraint # added constraint: constraint((T0362)C33.CB, (T0362)A115.CB) [> 3.1368 = 5.2280 < 6.7964] w=0.8510 to align # Constraint # added constraint: constraint((T0362)W32.CB, (T0362)F105.CB) [> 4.0800 = 6.8000 < 8.8400] w=0.8499 to align # Constraint # added constraint: constraint((T0362)L29.CB, (T0362)A113.CB) [> 3.2777 = 5.4628 < 7.1016] w=0.8499 to align # Constraint # added constraint: constraint((T0362)Q100.CB, (T0362)H119.CB) [> 4.4973 = 7.4955 < 9.7441] w=0.8431 to align # Constraint # added constraint: constraint((T0362)F26.CB, (T0362)F75.CB) [> 3.5728 = 5.9546 < 7.7410] w=0.8406 to align # Constraint # added constraint: constraint((T0362)L8.CB, (T0362)E88.CB) [> 3.1627 = 5.2711 < 6.8524] w=0.8330 to align # Constraint # added constraint: constraint((T0362)M24.CB, (T0362)H80.CB) [> 4.3436 = 7.2393 < 9.4111] w=0.8307 to align # Constraint # added constraint: constraint((T0362)W37.CB, (T0362)F103.CB) [> 3.6389 = 6.0648 < 7.8842] w=0.8279 to align # Constraint # added constraint: constraint((T0362)M24.CB, (T0362)P78.CB) [> 4.2667 = 7.1112 < 9.2446] w=0.8263 to align # Constraint # added constraint: constraint((T0362)L9.CB, (T0362)A86.CB) [> 4.3552 = 7.2587 < 9.4363] w=0.8249 to align # Constraint # added constraint: constraint((T0362)L8.CB, (T0362)M87.CB) [> 4.0829 = 6.8048 < 8.8462] w=0.8248 to align # Constraint # added constraint: constraint((T0362)L29.CB, (T0362)F75.CB) [> 4.3970 = 7.3283 < 9.5267] w=0.8238 to align # Constraint # added constraint: constraint((T0362)V13.CB, (T0362)I79.CB) [> 3.4214 = 5.7023 < 7.4130] w=0.8229 to align # Constraint # added constraint: constraint((T0362)L9.CB, (T0362)M87.CB) [> 2.9038 = 4.8397 < 6.2915] w=0.8229 to align # Constraint # added constraint: constraint((T0362)W32.CB, (T0362)L85.CB) [> 3.9408 = 6.5680 < 8.5384] w=0.8192 to align # Constraint # added constraint: constraint((T0362)L9.CB, (T0362)S36.CB) [> 2.7812 = 4.6353 < 6.0259] w=0.8136 to align # Constraint # added constraint: constraint((T0362)V13.CB, (T0362)L85.CB) [> 3.8193 = 6.3654 < 8.2751] w=0.8126 to align # Constraint # added constraint: constraint((T0362)R10.CB, (T0362)A86.CB) [> 3.1567 = 5.2612 < 6.8395] w=0.8126 to align # Constraint # added constraint: constraint((T0362)L8.CB, (T0362)A86.CB) [> 3.7098 = 6.1830 < 8.0379] w=0.8043 to align # Constraint # added constraint: constraint((T0362)R10.CB, (T0362)L85.CB) [> 4.0954 = 6.8257 < 8.8735] w=0.8024 to align # Constraint # added constraint: constraint((T0362)V23.CB, (T0362)I79.CB) [> 3.8234 = 6.3724 < 8.2841] w=0.8001 to align # Constraint # added constraint: constraint((T0362)V23.CB, (T0362)P78.CB) [> 2.6202 = 4.3670 < 5.6771] w=0.8001 to align # Constraint # added constraint: constraint((T0362)V13.CB, (T0362)G82.CA) [> 3.1099 = 5.1831 < 6.7381] w=0.7983 to align # Constraint # added constraint: constraint((T0362)L7.CB, (T0362)L89.CB) [> 2.9353 = 4.8921 < 6.3597] w=0.7942 to align # Constraint # added constraint: constraint((T0362)V13.CB, (T0362)M24.CB) [> 3.1893 = 5.3155 < 6.9101] w=0.7922 to align # Constraint # added constraint: constraint((T0362)H102.CB, (T0362)H114.CB) [> 4.4994 = 7.4990 < 9.7486] w=0.7860 to align # Constraint # added constraint: constraint((T0362)V13.CB, (T0362)D83.CB) [> 3.0972 = 5.1620 < 6.7106] w=0.7851 to align # Constraint # added constraint: constraint((T0362)V12.CB, (T0362)A84.CB) [> 3.2805 = 5.4675 < 7.1077] w=0.7838 to align # Constraint # added constraint: constraint((T0362)V101.CB, (T0362)R118.CB) [> 4.5712 = 7.6187 < 9.9043] w=0.7832 to align # Constraint # added constraint: constraint((T0362)F30.CB, (T0362)A73.CB) [> 3.7126 = 6.1877 < 8.0440] w=0.7796 to align # Constraint # added constraint: constraint((T0362)F30.CB, (T0362)C71.CB) [> 4.1742 = 6.9570 < 9.0442] w=0.7775 to align # Constraint # added constraint: constraint((T0362)L7.CB, (T0362)S40.CB) [> 2.7150 = 4.5251 < 5.8826] w=0.7726 to align # Constraint # added constraint: constraint((T0362)R11.CB, (T0362)L85.CB) [> 3.0591 = 5.0985 < 6.6281] w=0.7716 to align # Constraint # added constraint: constraint((T0362)R10.CB, (T0362)A84.CB) [> 3.5544 = 5.9239 < 7.7011] w=0.7716 to align # Constraint # added constraint: constraint((T0362)V23.CB, (T0362)H80.CB) [> 3.5831 = 5.9718 < 7.7634] w=0.7693 to align # Constraint # added constraint: constraint((T0362)D74.CB, (T0362)A115.CB) [> 4.3104 = 7.1840 < 9.3392] w=0.7615 to align # Constraint # added constraint: constraint((T0362)R11.CB, (T0362)W32.CB) [> 3.2769 = 5.4616 < 7.1000] w=0.7613 to align # Constraint # added constraint: constraint((T0362)L7.CB, (T0362)S36.CB) [> 3.6461 = 6.0768 < 7.8999] w=0.7429 to align # Constraint # added constraint: constraint((T0362)N97.CB, (T0362)A121.CB) [> 3.4101 = 5.6835 < 7.3885] w=0.7415 to align # Constraint # added constraint: constraint((T0362)D17.CB, (T0362)Q28.CB) [> 2.7497 = 4.5828 < 5.9576] w=0.7412 to align # Constraint # added constraint: constraint((T0362)H34.CB, (T0362)I68.CB) [> 3.9316 = 6.5527 < 8.5185] w=0.7375 to align # Constraint # added constraint: constraint((T0362)V13.CB, (T0362)T81.CB) [> 3.0324 = 5.0540 < 6.5702] w=0.7340 to align # Constraint # added constraint: constraint((T0362)V13.CB, (T0362)H80.CB) [> 4.0231 = 6.7051 < 8.7167] w=0.7307 to align # Constraint # added constraint: constraint((T0362)L9.CB, (T0362)E39.CB) [> 3.8141 = 6.3568 < 8.2638] w=0.7265 to align # Constraint # added constraint: constraint((T0362)L66.CB, (T0362)A121.CB) [> 3.3989 = 5.6648 < 7.3643] w=0.7256 to align # Constraint # added constraint: constraint((T0362)L7.CB, (T0362)E88.CB) [> 4.3256 = 7.2094 < 9.3722] w=0.7123 to align # Constraint # added constraint: constraint((T0362)A86.CB, (T0362)C107.CB) [> 4.5138 = 7.5230 < 9.7799] w=0.7110 to align # Constraint # added constraint: constraint((T0362)R10.CB, (T0362)M87.CB) [> 4.4598 = 7.4330 < 9.6630] w=0.7101 to align # Constraint # added constraint: constraint((T0362)R11.CB, (T0362)A84.CB) [> 4.2314 = 7.0523 < 9.1679] w=0.7101 to align # Constraint # added constraint: constraint((T0362)W6.CB, (T0362)L89.CB) [> 3.9952 = 6.6587 < 8.6563] w=0.7019 to align # Constraint # added constraint: constraint((T0362)S40.CB, (T0362)P91.CB) [> 3.9048 = 6.5080 < 8.4604] w=0.6999 to align # Constraint # added constraint: constraint((T0362)W6.CB, (T0362)R90.CB) [> 3.0318 = 5.0530 < 6.5689] w=0.6998 to align # Constraint # added constraint: constraint((T0362)L7.CB, (T0362)E39.CB) [> 3.3672 = 5.6120 < 7.2955] w=0.6896 to align # Constraint # added constraint: constraint((T0362)S98.CB, (T0362)A121.CB) [> 4.2744 = 7.1239 < 9.2611] w=0.6800 to align # Constraint # added constraint: constraint((T0362)A65.CB, (T0362)A121.CB) [> 4.2991 = 7.1651 < 9.3147] w=0.6799 to align # Constraint # added constraint: constraint((T0362)L8.CB, (T0362)L89.CB) [> 4.4679 = 7.4465 < 9.6804] w=0.6796 to align # Constraint # added constraint: constraint((T0362)W37.CB, (T0362)H119.CB) [> 4.2828 = 7.1379 < 9.2793] w=0.6795 to align # Constraint # added constraint: constraint((T0362)L41.CB, (T0362)L66.CB) [> 3.2696 = 5.4493 < 7.0841] w=0.6793 to align # Constraint # added constraint: constraint((T0362)G22.CA, (T0362)H80.CB) [> 3.9680 = 6.6133 < 8.5974] w=0.6753 to align # Constraint # added constraint: constraint((T0362)R11.CB, (T0362)M87.CB) [> 4.0995 = 6.8326 < 8.8823] w=0.6690 to align # Constraint # added constraint: constraint((T0362)L66.CB, (T0362)F99.CB) [> 4.1770 = 6.9616 < 9.0501] w=0.6646 to align # Constraint # added constraint: constraint((T0362)C33.CB, (T0362)A73.CB) [> 4.2145 = 7.0242 < 9.1315] w=0.6611 to align # Constraint # added constraint: constraint((T0362)L29.CB, (T0362)A73.CB) [> 4.0011 = 6.6685 < 8.6690] w=0.6602 to align # Constraint # added constraint: constraint((T0362)L9.CB, (T0362)E35.CB) [> 3.7799 = 6.2997 < 8.1897] w=0.6592 to align # Constraint # added constraint: constraint((T0362)V13.CB, (T0362)A84.CB) [> 4.3089 = 7.1815 < 9.3360] w=0.6486 to align # Constraint # added constraint: constraint((T0362)V12.CB, (T0362)D83.CB) [> 4.3986 = 7.3310 < 9.5303] w=0.6468 to align # Constraint # added constraint: constraint((T0362)F15.CB, (T0362)T81.CB) [> 3.3457 = 5.5761 < 7.2490] w=0.6452 to align # Constraint # added constraint: constraint((T0362)W6.CB, (T0362)E88.CB) [> 4.0171 = 6.6951 < 8.7037] w=0.6403 to align # Constraint # added constraint: constraint((T0362)V12.CB, (T0362)L85.CB) [> 4.5275 = 7.5458 < 9.8096] w=0.6350 to align # Constraint # added constraint: constraint((T0362)L29.CB, (T0362)A112.CB) [> 4.2468 = 7.0780 < 9.2014] w=0.6346 to align # Constraint # added constraint: constraint((T0362)V64.CB, (T0362)A121.CB) [> 3.4189 = 5.6981 < 7.4076] w=0.6185 to align # Constraint # added constraint: constraint((T0362)E104.CB, (T0362)A115.CB) [> 4.5883 = 7.6472 < 9.9413] w=0.6177 to align # Constraint # added constraint: constraint((T0362)C33.CB, (T0362)L89.CB) [> 4.3779 = 7.2966 < 9.4855] w=0.6148 to align # Constraint # added constraint: constraint((T0362)C33.CB, (T0362)A113.CB) [> 4.2105 = 7.0175 < 9.1228] w=0.6046 to align # Constraint # added constraint: constraint((T0362)R14.CB, (T0362)T81.CB) [> 3.8892 = 6.4820 < 8.4267] w=0.6043 to align # Constraint # added constraint: constraint((T0362)R77.CB, (T0362)A113.CB) [> 4.6180 = 7.6967 < 10.0057] w=0.6014 to align # Constraint # added constraint: constraint((T0362)F26.CB, (T0362)A73.CB) [> 4.4319 = 7.3865 < 9.6024] w=0.5994 to align # Constraint # added constraint: constraint((T0362)E88.CB, (T0362)F105.CB) [> 4.6187 = 7.6978 < 10.0072] w=0.5943 to align # Constraint # added constraint: constraint((T0362)F99.CB, (T0362)A121.CB) [> 4.0853 = 6.8088 < 8.8514] w=0.5877 to align # Constraint # added constraint: constraint((T0362)L41.CB, (T0362)H119.CB) [> 3.1371 = 5.2285 < 6.7971] w=0.5765 to align # Constraint # added constraint: constraint((T0362)T18.CB, (T0362)T81.CB) [> 3.4089 = 5.6815 < 7.3859] w=0.5636 to align # Constraint # added constraint: constraint((T0362)L41.CB, (T0362)V101.CB) [> 3.9328 = 6.5546 < 8.5210] w=0.5468 to align # Constraint # added constraint: constraint((T0362)D17.CB, (T0362)T81.CB) [> 4.3121 = 7.1868 < 9.3428] w=0.5428 to align # Constraint # added constraint: constraint((T0362)R14.CB, (T0362)G82.CA) [> 4.3107 = 7.1845 < 9.3399] w=0.5426 to align # Constraint # added constraint: constraint((T0362)Q72.CB, (T0362)I117.CB) [> 4.5698 = 7.6164 < 9.9013] w=0.5409 to align # Constraint # added constraint: constraint((T0362)L29.CB, (T0362)L85.CB) [> 4.2133 = 7.0221 < 9.1288] w=0.5392 to align # Constraint # added constraint: constraint((T0362)L41.CB, (T0362)F99.CB) [> 3.3532 = 5.5887 < 7.2653] w=0.5357 to align # Constraint # added constraint: constraint((T0362)P91.CB, (T0362)H102.CB) [> 4.5429 = 7.5714 < 9.8429] w=0.5349 to align # Constraint # added constraint: constraint((T0362)L9.CB, (T0362)W32.CB) [> 3.9843 = 6.6406 < 8.6327] w=0.5268 to align # Constraint # added constraint: constraint((T0362)L7.CB, (T0362)S43.CB) [> 4.0186 = 6.6977 < 8.7070] w=0.5169 to align # Constraint # added constraint: constraint((T0362)P67.CB, (T0362)I122.CB) [> 3.3604 = 5.6007 < 7.2809] w=0.5114 to align # Constraint # added constraint: constraint((T0362)S36.CB, (T0362)E88.CB) [> 4.2706 = 7.1177 < 9.2530] w=0.5053 to align # Constraint # added constraint: constraint((T0362)M24.CB, (T0362)L85.CB) [> 4.3305 = 7.2175 < 9.3828] w=0.5049 to align # Constraint # added constraint: constraint((T0362)F99.CB, (T0362)L120.CB) [> 4.6417 = 7.7361 < 10.0570] w=0.5021 to align # Constraint # added constraint: constraint((T0362)A65.CB, (T0362)I122.CB) [> 3.5135 = 5.8559 < 7.6126] w=0.5010 to align # Constraint # added constraint: constraint((T0362)L9.CB, (T0362)L89.CB) [> 4.4975 = 7.4958 < 9.7446] w=0.4919 to align # Constraint # added constraint: constraint((T0362)M87.CB, (T0362)R106.CB) [> 4.6380 = 7.7300 < 10.0490] w=0.4791 to align # Constraint # added constraint: constraint((T0362)V64.CB, (T0362)I122.CB) [> 4.1859 = 6.9764 < 9.0694] w=0.4703 to align # Constraint # added constraint: constraint((T0362)C33.CB, (T0362)C71.CB) [> 4.2984 = 7.1640 < 9.3132] w=0.4623 to align # Constraint # added constraint: constraint((T0362)S40.CB, (T0362)R90.CB) [> 4.1984 = 6.9973 < 9.0964] w=0.4611 to align # Constraint # added constraint: constraint((T0362)M24.CB, (T0362)T81.CB) [> 4.2243 = 7.0404 < 9.1525] w=0.4554 to align # Constraint # added constraint: constraint((T0362)A73.CB, (T0362)L116.CB) [> 4.6248 = 7.7080 < 10.0204] w=0.4470 to align # Constraint # added constraint: constraint((T0362)M24.CB, (T0362)D83.CB) [> 4.4981 = 7.4969 < 9.7460] w=0.4451 to align # Constraint # added constraint: constraint((T0362)R76.CB, (T0362)Q110.CB) [> 4.6125 = 7.6876 < 9.9938] w=0.4432 to align # Constraint # added constraint: constraint((T0362)I68.CB, (T0362)L120.CB) [> 4.6131 = 7.6884 < 9.9950] w=0.4363 to align # Constraint # added constraint: constraint((T0362)G22.CA, (T0362)T81.CB) [> 3.8658 = 6.4430 < 8.3759] w=0.4303 to align # Constraint # added constraint: constraint((T0362)E42.CB, (T0362)L66.CB) [> 3.6168 = 6.0280 < 7.8364] w=0.4230 to align # Constraint # added constraint: constraint((T0362)W37.CB, (T0362)I68.CB) [> 4.2639 = 7.1065 < 9.2384] w=0.4209 to align # Constraint # added constraint: constraint((T0362)L7.CB, (T0362)R90.CB) [> 4.3422 = 7.2370 < 9.4081] w=0.4099 to align # Constraint # added constraint: constraint((T0362)H70.CB, (T0362)L116.CB) [> 4.5318 = 7.5531 < 9.8190] w=0.3972 to align # Constraint # added constraint: constraint((T0362)W37.CB, (T0362)A115.CB) [> 4.3877 = 7.3128 < 9.5067] w=0.3942 to align # Constraint # added constraint: constraint((T0362)R11.CB, (T0362)A86.CB) [> 4.5957 = 7.6595 < 9.9573] w=0.3893 to align # Constraint # added constraint: constraint((T0362)H102.CB, (T0362)I117.CB) [> 4.6831 = 7.8052 < 10.1467] w=0.3821 to align # Constraint # added constraint: constraint((T0362)P96.CB, (T0362)A131.CB) [> 3.5332 = 5.8887 < 7.6554] w=0.3692 to align # Constraint # added constraint: constraint((T0362)N97.CB, (T0362)C130.CB) [> 3.7065 = 6.1776 < 8.0308] w=0.3692 to align # Constraint # added constraint: constraint((T0362)L120.CB, (T0362)R129.CB) [> 3.0489 = 5.0815 < 6.6059] w=0.3692 to align # Constraint # added constraint: constraint((T0362)A121.CB, (T0362)C130.CB) [> 3.1500 = 5.2500 < 6.8250] w=0.3692 to align # Constraint # added constraint: constraint((T0362)L66.CB, (T0362)I122.CB) [> 4.1634 = 6.9389 < 9.0206] w=0.3681 to align # Constraint # added constraint: constraint((T0362)W6.CB, (T0362)P91.CB) [> 4.0339 = 6.7232 < 8.7402] w=0.3625 to align # Constraint # added constraint: constraint((T0362)A121.CB, (T0362)L132.CB) [> 3.1101 = 5.1835 < 6.7386] w=0.3384 to align # Constraint # added constraint: constraint((T0362)F103.CB, (T0362)A113.CB) [> 4.6343 = 7.7239 < 10.0410] w=0.3308 to align # Constraint # added constraint: constraint((T0362)N95.CB, (T0362)L132.CB) [> 4.5705 = 7.6175 < 9.9027] w=0.3076 to align # Constraint # added constraint: constraint((T0362)F99.CB, (T0362)L132.CB) [> 3.9595 = 6.5992 < 8.5790] w=0.3076 to align # Constraint # added constraint: constraint((T0362)F26.CB, (T0362)A113.CB) [> 4.3666 = 7.2776 < 9.4609] w=0.2955 to align # Constraint # added constraint: constraint((T0362)F30.CB, (T0362)A113.CB) [> 4.4301 = 7.3835 < 9.5985] w=0.2905 to align # Constraint # added constraint: constraint((T0362)V64.CB, (T0362)C130.CB) [> 3.9892 = 6.6487 < 8.6433] w=0.2871 to align # Constraint # added constraint: constraint((T0362)L89.CB, (T0362)E104.CB) [> 4.6614 = 7.7689 < 10.0996] w=0.2867 to align # Constraint # added constraint: constraint((T0362)Y44.CB, (T0362)P91.CB) [> 3.8231 = 6.3718 < 8.2833] w=0.2785 to align # Constraint # added constraint: constraint((T0362)T18.CB, (T0362)H80.CB) [> 4.3564 = 7.2606 < 9.4388] w=0.2760 to align # Constraint # added constraint: constraint((T0362)Y44.CB, (T0362)L94.CB) [> 3.7260 = 6.2101 < 8.0731] w=0.2757 to align # Constraint # added constraint: constraint((T0362)V64.CB, (T0362)N123.CB) [> 3.7689 = 6.2815 < 8.1660] w=0.2666 to align # Constraint # added constraint: constraint((T0362)G16.CA, (T0362)T81.CB) [> 4.5394 = 7.5657 < 9.8355] w=0.2660 to align # Constraint # added constraint: constraint((T0362)W37.CB, (T0362)C71.CB) [> 4.4572 = 7.4286 < 9.6572] w=0.2552 to align # Constraint # added constraint: constraint((T0362)Y44.CB, (T0362)F99.CB) [> 3.9583 = 6.5971 < 8.5762] w=0.2530 to align # Constraint # added constraint: constraint((T0362)R90.CB, (T0362)E104.CB) [> 4.6099 = 7.6832 < 9.9882] w=0.2528 to align # Constraint # added constraint: constraint((T0362)L94.CB, (T0362)L132.CB) [> 3.7692 = 6.2820 < 8.1666] w=0.2461 to align # Constraint # added constraint: constraint((T0362)L94.CB, (T0362)D137.CB) [> 4.0232 = 6.7053 < 8.7169] w=0.2461 to align # Constraint # added constraint: constraint((T0362)E63.CB, (T0362)N123.CB) [> 3.5608 = 5.9346 < 7.7150] w=0.2461 to align # Constraint # added constraint: constraint((T0362)Y44.CB, (T0362)W139.CB) [> 3.0700 = 5.1166 < 6.6516] w=0.2359 to align # Constraint # added constraint: constraint((T0362)L7.CB, (T0362)W37.CB) [> 4.4495 = 7.4159 < 9.6406] w=0.2295 to align # Constraint # added constraint: constraint((T0362)R11.CB, (T0362)Q28.CB) [> 4.4711 = 7.4518 < 9.6873] w=0.2288 to align # Constraint # added constraint: constraint((T0362)P67.CB, (T0362)A121.CB) [> 4.5651 = 7.6085 < 9.8910] w=0.2253 to align # Constraint # added constraint: constraint((T0362)P91.CB, (T0362)L140.CB) [> 3.6329 = 6.0549 < 7.8713] w=0.2153 to align # Constraint # added constraint: constraint((T0362)L9.CB, (T0362)S40.CB) [> 4.2855 = 7.1425 < 9.2853] w=0.2153 to align # Constraint # added constraint: constraint((T0362)W37.CB, (T0362)L66.CB) [> 4.4424 = 7.4040 < 9.6252] w=0.1854 to align # Constraint # added constraint: constraint((T0362)L94.CB, (T0362)L140.CB) [> 3.7220 = 6.2033 < 8.0643] w=0.1846 to align # Constraint # added constraint: constraint((T0362)A65.CB, (T0362)A124.CB) [> 3.3732 = 5.6219 < 7.3085] w=0.1846 to align # Constraint # added constraint: constraint((T0362)E63.CB, (T0362)Q125.CB) [> 3.9446 = 6.5743 < 8.5466] w=0.1846 to align # Constraint # added constraint: constraint((T0362)L46.CB, (T0362)I136.CB) [> 3.8355 = 6.3926 < 8.3103] w=0.1846 to align # Constraint # added constraint: constraint((T0362)G45.CA, (T0362)W139.CB) [> 3.8165 = 6.3608 < 8.2691] w=0.1846 to align # Constraint # added constraint: constraint((T0362)R11.CB, (T0362)S36.CB) [> 4.3473 = 7.2456 < 9.4192] w=0.1844 to align # Constraint # added constraint: constraint((T0362)M24.CB, (T0362)A112.CB) [> 4.4878 = 7.4797 < 9.7236] w=0.1833 to align # Constraint # added constraint: constraint((T0362)F52.CB, (T0362)V64.CB) [> 3.4683 = 5.7806 < 7.5147] w=0.1812 to align # Constraint # added constraint: constraint((T0362)P67.CB, (T0362)R127.CB) [> 4.0810 = 6.8017 < 8.8422] w=0.1743 to align # Constraint # added constraint: constraint((T0362)I51.CB, (T0362)A65.CB) [> 4.0111 = 6.6852 < 8.6908] w=0.1743 to align # Constraint # added constraint: constraint((T0362)V13.CB, (T0362)V23.CB) [> 4.6993 = 7.8322 < 10.1818] w=0.1732 to align # Constraint # added constraint: constraint((T0362)L7.CB, (T0362)M87.CB) [> 4.6415 = 7.7358 < 10.0566] w=0.1659 to align # Constraint # added constraint: constraint((T0362)W37.CB, (T0362)M87.CB) [> 4.0591 = 6.7652 < 8.7947] w=0.1647 to align # Constraint # added constraint: constraint((T0362)L9.CB, (T0362)E88.CB) [> 4.6826 = 7.8043 < 10.1456] w=0.1578 to align # Constraint # added constraint: constraint((T0362)A121.CB, (T0362)I136.CB) [> 4.2663 = 7.1105 < 9.2437] w=0.1538 to align # Constraint # added constraint: constraint((T0362)A65.CB, (T0362)N123.CB) [> 4.3213 = 7.2022 < 9.3629] w=0.1538 to align # Constraint # added constraint: constraint((T0362)G16.CA, (T0362)Q28.CB) [> 4.6174 = 7.6957 < 10.0044] w=0.1528 to align # Constraint # added constraint: constraint((T0362)I69.CB, (T0362)I117.CB) [> 4.4678 = 7.4464 < 9.6803] w=0.1466 to align # Constraint # added constraint: constraint((T0362)I51.CB, (T0362)T61.CB) [> 4.0798 = 6.7997 < 8.8396] w=0.1435 to align # Constraint # added constraint: constraint((T0362)F15.CB, (T0362)G82.CA) [> 4.1942 = 6.9904 < 9.0875] w=0.1431 to align # Constraint # added constraint: constraint((T0362)A65.CB, (T0362)H119.CB) [> 3.9342 = 6.5570 < 8.5241] w=0.1384 to align # Constraint # added constraint: constraint((T0362)P48.CB, (T0362)A65.CB) [> 3.6600 = 6.1000 < 7.9300] w=0.1333 to align # Constraint # added constraint: constraint((T0362)F52.CB, (T0362)E63.CB) [> 4.0231 = 6.7052 < 8.7167] w=0.1332 to align # Constraint # added constraint: constraint((T0362)I51.CB, (T0362)L66.CB) [> 3.9532 = 6.5887 < 8.5653] w=0.1332 to align # Constraint # added constraint: constraint((T0362)P91.CB, (T0362)S143.CB) [> 3.5017 = 5.8362 < 7.5871] w=0.1231 to align # Constraint # added constraint: constraint((T0362)T18.CB, (T0362)Q28.CB) [> 4.6445 = 7.7409 < 10.0632] w=0.1231 to align # Constraint # added constraint: constraint((T0362)L46.CB, (T0362)W139.CB) [> 3.7960 = 6.3267 < 8.2247] w=0.1231 to align # Constraint # added constraint: constraint((T0362)G45.CA, (T0362)L66.CB) [> 4.0137 = 6.6896 < 8.6964] w=0.1229 to align # Constraint # added constraint: constraint((T0362)Y44.CB, (T0362)L140.CB) [> 3.6810 = 6.1350 < 7.9755] w=0.1128 to align # Constraint # added constraint: constraint((T0362)E88.CB, (T0362)H102.CB) [> 4.6655 = 7.7758 < 10.1085] w=0.1125 to align # Constraint # added constraint: constraint((T0362)L41.CB, (T0362)I68.CB) [> 4.4900 = 7.4833 < 9.7283] w=0.1033 to align # Constraint # added constraint: constraint((T0362)Y44.CB, (T0362)T61.CB) [> 4.0468 = 6.7446 < 8.7680] w=0.1024 to align # Constraint # added constraint: constraint((T0362)F52.CB, (T0362)A65.CB) [> 4.0369 = 6.7282 < 8.7466] w=0.0993 to align # Constraint # added constraint: constraint((T0362)A86.CB, (T0362)E109.CB) [> 4.6446 = 7.7411 < 10.0634] w=0.0934 to align # Constraint # added constraint: constraint((T0362)L120.CB, (T0362)C130.CB) [> 4.5342 = 7.5569 < 9.8240] w=0.0923 to align # Constraint # added constraint: constraint((T0362)V64.CB, (T0362)L132.CB) [> 4.6301 = 7.7169 < 10.0320] w=0.0923 to align # Constraint # added constraint: constraint((T0362)A86.CB, (T0362)E108.CB) [> 4.2016 = 7.0026 < 9.1034] w=0.0923 to align # Constraint # added constraint: constraint((T0362)N97.CB, (T0362)I122.CB) [> 4.4003 = 7.3339 < 9.5341] w=0.0923 to align # Constraint # added constraint: constraint((T0362)I51.CB, (T0362)A121.CB) [> 4.0489 = 6.7482 < 8.7726] w=0.0922 to align # Constraint # added constraint: constraint((T0362)W37.CB, (T0362)P91.CB) [> 4.4868 = 7.4781 < 9.7215] w=0.0890 to align # Constraint # added constraint: constraint((T0362)A65.CB, (T0362)L120.CB) [> 3.5689 = 5.9482 < 7.7327] w=0.0872 to align # Constraint # added constraint: constraint((T0362)A86.CB, (T0362)E104.CB) [> 4.4238 = 7.3730 < 9.5850] w=0.0819 to align # Constraint # added constraint: constraint((T0362)Y44.CB, (T0362)A121.CB) [> 4.1554 = 6.9257 < 9.0034] w=0.0797 to align # Constraint # added constraint: constraint((T0362)V64.CB, (T0362)L120.CB) [> 3.9128 = 6.5213 < 8.4777] w=0.0793 to align # Constraint # added constraint: constraint((T0362)Y44.CB, (T0362)G135.CA) [> 3.4870 = 5.8117 < 7.5553] w=0.0718 to align # Constraint # added constraint: constraint((T0362)G22.CA, (T0362)P78.CB) [> 4.7070 = 7.8450 < 10.1985] w=0.0718 to align # Constraint # added constraint: constraint((T0362)D19.CB, (T0362)Q28.CB) [> 4.3350 = 7.2250 < 9.3925] w=0.0715 to align # Constraint # added constraint: constraint((T0362)C33.CB, (T0362)E104.CB) [> 4.7291 = 7.8819 < 10.2465] w=0.0715 to align # Constraint # added constraint: constraint((T0362)L46.CB, (T0362)A65.CB) [> 4.2892 = 7.1486 < 9.2932] w=0.0615 to align # Constraint # added constraint: constraint((T0362)P91.CB, (T0362)W139.CB) [> 3.4249 = 5.7082 < 7.4206] w=0.0615 to align # Constraint # added constraint: constraint((T0362)R93.CB, (T0362)L140.CB) [> 3.5628 = 5.9381 < 7.7195] w=0.0615 to align # Constraint # added constraint: constraint((T0362)P62.CB, (T0362)A124.CB) [> 4.4068 = 7.3447 < 9.5481] w=0.0615 to align # Constraint # added constraint: constraint((T0362)R93.CB, (T0362)S143.CB) [> 3.0644 = 5.1073 < 6.6396] w=0.0615 to align # Constraint # added constraint: constraint((T0362)Y44.CB, (T0362)L66.CB) [> 3.9381 = 6.5635 < 8.5325] w=0.0615 to align # Constraint # added constraint: constraint((T0362)N123.CB, (T0362)P133.CB) [> 3.6828 = 6.1380 < 7.9794] w=0.0615 to align # Constraint # added constraint: constraint((T0362)A73.CB, (T0362)F103.CB) [> 4.5097 = 7.5162 < 9.7711] w=0.0615 to align # Constraint # added constraint: constraint((T0362)R11.CB, (T0362)R31.CB) [> 4.7090 = 7.8483 < 10.2028] w=0.0614 to align # Constraint # added constraint: constraint((T0362)R93.CB, (T0362)R118.CB) [> 4.7778 = 7.9630 < 10.3518] w=0.0546 to align # Constraint # added constraint: constraint((T0362)C33.CB, (T0362)A112.CB) [> 4.2260 = 7.0433 < 9.1562] w=0.0520 to align # Constraint # added constraint: constraint((T0362)A49.CB, (T0362)A65.CB) [> 3.3792 = 5.6320 < 7.3216] w=0.0513 to align # Constraint # added constraint: constraint((T0362)P96.CB, (T0362)L120.CB) [> 3.8245 = 6.3742 < 8.2865] w=0.0464 to align # Constraint # added constraint: constraint((T0362)N47.CB, (T0362)P62.CB) [> 3.0407 = 5.0679 < 6.5882] w=0.0410 to align # Constraint # added constraint: constraint((T0362)D50.CB, (T0362)A65.CB) [> 3.2764 = 5.4606 < 7.0988] w=0.0410 to align # Constraint # added constraint: constraint((T0362)L46.CB, (T0362)P67.CB) [> 4.5142 = 7.5237 < 9.7809] w=0.0410 to align # Constraint # added constraint: constraint((T0362)P62.CB, (T0362)H119.CB) [> 4.4477 = 7.4129 < 9.6367] w=0.0410 to align # Constraint # added constraint: constraint((T0362)I79.CB, (T0362)Q110.CB) [> 4.6822 = 7.8036 < 10.1447] w=0.0410 to align # Constraint # added constraint: constraint((T0362)E63.CB, (T0362)I122.CB) [> 4.3322 = 7.2204 < 9.3865] w=0.0409 to align # Constraint # added constraint: constraint((T0362)H27.CB, (T0362)A115.CB) [> 4.3699 = 7.2832 < 9.4682] w=0.0378 to align # Constraint # added constraint: constraint((T0362)H27.CB, (T0362)A73.CB) [> 3.3956 = 5.6594 < 7.3572] w=0.0378 to align # Constraint # added constraint: constraint((T0362)H27.CB, (T0362)C71.CB) [> 4.7195 = 7.8658 < 10.2256] w=0.0378 to align # Constraint # added constraint: constraint((T0362)P67.CB, (T0362)R118.CB) [> 3.9014 = 6.5024 < 8.4531] w=0.0364 to align # Constraint # added constraint: constraint((T0362)C33.CB, (T0362)F75.CB) [> 4.5257 = 7.5429 < 9.8057] w=0.0316 to align # Constraint # added constraint: constraint((T0362)Q100.CB, (T0362)S143.CB) [> 3.1984 = 5.3307 < 6.9299] w=0.0308 to align # Constraint # added constraint: constraint((T0362)Q72.CB, (T0362)R118.CB) [> 4.7246 = 7.8744 < 10.2367] w=0.0308 to align # Constraint # added constraint: constraint((T0362)V23.CB, (T0362)R77.CB) [> 4.5987 = 7.6645 < 9.9639] w=0.0308 to align # Constraint # added constraint: constraint((T0362)F75.CB, (T0362)H114.CB) [> 4.6156 = 7.6926 < 10.0004] w=0.0308 to align # Constraint # added constraint: constraint((T0362)E88.CB, (T0362)I111.CB) [> 4.3608 = 7.2679 < 9.4483] w=0.0308 to align # Constraint # added constraint: constraint((T0362)R90.CB, (T0362)I136.CB) [> 4.5188 = 7.5313 < 9.7907] w=0.0308 to align # Constraint # added constraint: constraint((T0362)A49.CB, (T0362)P67.CB) [> 4.3053 = 7.1755 < 9.3281] w=0.0308 to align # Constraint # added constraint: constraint((T0362)L94.CB, (T0362)R118.CB) [> 4.3762 = 7.2937 < 9.4819] w=0.0308 to align # Constraint # added constraint: constraint((T0362)I69.CB, (T0362)R129.CB) [> 4.7586 = 7.9310 < 10.3103] w=0.0308 to align # Constraint # added constraint: constraint((T0362)L46.CB, (T0362)L140.CB) [> 4.4024 = 7.3373 < 9.5385] w=0.0308 to align # Constraint # added constraint: constraint((T0362)R11.CB, (T0362)F105.CB) [> 4.7833 = 7.9721 < 10.3637] w=0.0308 to align # Constraint # added constraint: constraint((T0362)A121.CB, (T0362)L140.CB) [> 4.6197 = 7.6994 < 10.0093] w=0.0308 to align # Constraint # added constraint: constraint((T0362)P67.CB, (T0362)A124.CB) [> 4.6718 = 7.7863 < 10.1221] w=0.0308 to align # Constraint # added constraint: constraint((T0362)E92.CB, (T0362)R118.CB) [> 4.3654 = 7.2758 < 9.4585] w=0.0308 to align # Constraint # added constraint: constraint((T0362)I68.CB, (T0362)V101.CB) [> 4.7456 = 7.9093 < 10.2821] w=0.0308 to align # Constraint # added constraint: constraint((T0362)P78.CB, (T0362)Q110.CB) [> 4.7039 = 7.8399 < 10.1918] w=0.0307 to align # Constraint # added constraint: constraint((T0362)I122.CB, (T0362)P133.CB) [> 4.6810 = 7.8017 < 10.1422] w=0.0307 to align # Constraint # added constraint: constraint((T0362)I122.CB, (T0362)I136.CB) [> 3.3823 = 5.6373 < 7.3284] w=0.0307 to align # Constraint # added constraint: constraint((T0362)C71.CB, (T0362)F103.CB) [> 4.3363 = 7.2272 < 9.3953] w=0.0306 to align # Constraint # added constraint: constraint((T0362)Y44.CB, (T0362)A65.CB) [> 4.3440 = 7.2401 < 9.4121] w=0.0284 to align # Constraint # added constraint: constraint((T0362)H70.CB, (T0362)A115.CB) [> 3.9962 = 6.6603 < 8.6584] w=0.0284 to align # Constraint # added constraint: constraint((T0362)P67.CB, (T0362)I117.CB) [> 3.3954 = 5.6590 < 7.3567] w=0.0262 to align # Constraint # added constraint: constraint((T0362)W37.CB, (T0362)P67.CB) [> 4.3416 = 7.2360 < 9.4068] w=0.0262 to align # Constraint # added constraint: constraint((T0362)H25.CB, (T0362)T81.CB) [> 4.4593 = 7.4322 < 9.6619] w=0.0224 to align # Constraint # added constraint: constraint((T0362)I51.CB, (T0362)P67.CB) [> 4.2615 = 7.1025 < 9.2333] w=0.0205 to align # Constraint # added constraint: constraint((T0362)L8.CB, (T0362)F103.CB) [> 4.4735 = 7.4559 < 9.6926] w=0.0205 to align # Constraint # added constraint: constraint((T0362)R14.CB, (T0362)L29.CB) [> 2.9103 = 4.8505 < 6.3056] w=0.0205 to align # Constraint # added constraint: constraint((T0362)R14.CB, (T0362)F30.CB) [> 4.4121 = 7.3535 < 9.5595] w=0.0205 to align # Constraint # added constraint: constraint((T0362)D17.CB, (T0362)L85.CB) [> 4.5138 = 7.5230 < 9.7799] w=0.0205 to align # Constraint # added constraint: constraint((T0362)V12.CB, (T0362)M87.CB) [> 4.3520 = 7.2534 < 9.4294] w=0.0204 to align # Constraint # added constraint: constraint((T0362)V12.CB, (T0362)A86.CB) [> 3.6151 = 6.0252 < 7.8328] w=0.0204 to align # Constraint # added constraint: constraint((T0362)V12.CB, (T0362)L29.CB) [> 4.7628 = 7.9380 < 10.3194] w=0.0204 to align # Constraint # added constraint: constraint((T0362)F15.CB, (T0362)M24.CB) [> 3.5254 = 5.8757 < 7.6385] w=0.0204 to align # Constraint # added constraint: constraint((T0362)F15.CB, (T0362)I79.CB) [> 4.5879 = 7.6464 < 9.9404] w=0.0204 to align # Constraint # added constraint: constraint((T0362)F15.CB, (T0362)H80.CB) [> 4.7224 = 7.8706 < 10.2318] w=0.0204 to align # Constraint # added constraint: constraint((T0362)D17.CB, (T0362)F26.CB) [> 4.7846 = 7.9743 < 10.3667] w=0.0204 to align # Constraint # added constraint: constraint((T0362)F26.CB, (T0362)D83.CB) [> 4.6316 = 7.7194 < 10.0352] w=0.0204 to align # Constraint # added constraint: constraint((T0362)F26.CB, (T0362)F105.CB) [> 3.6952 = 6.1587 < 8.0063] w=0.0204 to align # Constraint # added constraint: constraint((T0362)A86.CB, (T0362)F103.CB) [> 4.4103 = 7.3506 < 9.5557] w=0.0204 to align # Constraint # added constraint: constraint((T0362)A84.CB, (T0362)R106.CB) [> 2.5927 = 4.3211 < 5.6175] w=0.0204 to align # Constraint # added constraint: constraint((T0362)A84.CB, (T0362)F105.CB) [> 4.3612 = 7.2687 < 9.4493] w=0.0204 to align # Constraint # added constraint: constraint((T0362)C33.CB, (T0362)A86.CB) [> 4.4067 = 7.3445 < 9.5479] w=0.0204 to align # Constraint # added constraint: constraint((T0362)F26.CB, (T0362)A112.CB) [> 4.7238 = 7.8729 < 10.2348] w=0.0204 to align # Constraint # added constraint: constraint((T0362)I68.CB, (T0362)S98.CB) [> 4.1919 = 6.9866 < 9.0825] w=0.0182 to align # Constraint # added constraint: constraint((T0362)Q72.CB, (T0362)H114.CB) [> 4.3272 = 7.2120 < 9.3756] w=0.0182 to align # Constraint # added constraint: constraint((T0362)C33.CB, (T0362)E88.CB) [> 4.2357 = 7.0595 < 9.1773] w=0.0175 to align # Constraint # added constraint: constraint((T0362)E38.CB, (T0362)C71.CB) [> 4.1934 = 6.9889 < 9.0856] w=0.0113 to align # Constraint # added constraint: constraint((T0362)L66.CB, (T0362)R118.CB) [> 4.6100 = 7.6834 < 9.9884] w=0.0112 to align # Constraint # added constraint: constraint((T0362)L66.CB, (T0362)I117.CB) [> 4.3466 = 7.2444 < 9.4177] w=0.0112 to align # Constraint # added constraint: constraint((T0362)H34.CB, (T0362)H70.CB) [> 4.2997 = 7.1662 < 9.3161] w=0.0103 to align # Constraint # added constraint: constraint((T0362)F30.CB, (T0362)H70.CB) [> 4.5250 = 7.5417 < 9.8043] w=0.0103 to align # Constraint # added constraint: constraint((T0362)L66.CB, (T0362)R127.CB) [> 4.1222 = 6.8704 < 8.9315] w=0.0103 to align # Constraint # added constraint: constraint((T0362)E63.CB, (T0362)I136.CB) [> 4.7976 = 7.9960 < 10.3948] w=0.0103 to align # Constraint # added constraint: constraint((T0362)R14.CB, (T0362)H27.CB) [> 3.0803 = 5.1339 < 6.6741] w=0.0103 to align # Constraint # added constraint: constraint((T0362)F15.CB, (T0362)F30.CB) [> 3.4248 = 5.7080 < 7.4204] w=0.0103 to align # Constraint # added constraint: constraint((T0362)R10.CB, (T0362)S40.CB) [> 4.6758 = 7.7929 < 10.1308] w=0.0103 to align # Constraint # added constraint: constraint((T0362)R10.CB, (T0362)S36.CB) [> 4.6758 = 7.7929 < 10.1308] w=0.0103 to align # Constraint # added constraint: constraint((T0362)L8.CB, (T0362)Y44.CB) [> 4.5042 = 7.5069 < 9.7590] w=0.0103 to align # Constraint # added constraint: constraint((T0362)G45.CA, (T0362)H119.CB) [> 3.8501 = 6.4168 < 8.3419] w=0.0103 to align # Constraint # added constraint: constraint((T0362)G45.CA, (T0362)I68.CB) [> 4.7682 = 7.9469 < 10.3310] w=0.0103 to align # Constraint # added constraint: constraint((T0362)Y44.CB, (T0362)F103.CB) [> 4.6442 = 7.7404 < 10.0625] w=0.0103 to align # Constraint # added constraint: constraint((T0362)Y44.CB, (T0362)M87.CB) [> 2.6206 = 4.3676 < 5.6779] w=0.0103 to align # Constraint # added constraint: constraint((T0362)L41.CB, (T0362)C71.CB) [> 4.1653 = 6.9422 < 9.0249] w=0.0103 to align # Constraint # added constraint: constraint((T0362)G16.CA, (T0362)F30.CB) [> 3.5529 = 5.9216 < 7.6981] w=0.0103 to align # Constraint # added constraint: constraint((T0362)H27.CB, (T0362)G82.CA) [> 4.6974 = 7.8291 < 10.1778] w=0.0103 to align # Constraint # added constraint: constraint((T0362)W37.CB, (T0362)F75.CB) [> 4.4784 = 7.4640 < 9.7032] w=0.0103 to align # Constraint # added constraint: constraint((T0362)W37.CB, (T0362)A112.CB) [> 3.7128 = 6.1880 < 8.0445] w=0.0103 to align # Constraint # added constraint: constraint((T0362)H34.CB, (T0362)I69.CB) [> 3.8836 = 6.4727 < 8.4144] w=0.0102 to align # Constraint # added constraint: constraint((T0362)E38.CB, (T0362)I69.CB) [> 4.7629 = 7.9382 < 10.3197] w=0.0102 to align # Constraint # added constraint: constraint((T0362)I69.CB, (T0362)A115.CB) [> 3.7677 = 6.2794 < 8.1632] w=0.0102 to align # Constraint # added constraint: constraint((T0362)I69.CB, (T0362)L116.CB) [> 4.1182 = 6.8636 < 8.9227] w=0.0102 to align # Constraint # added constraint: constraint((T0362)F99.CB, (T0362)I122.CB) [> 4.6924 = 7.8207 < 10.1669] w=0.0102 to align # Constraint # added constraint: constraint((T0362)R14.CB, (T0362)D83.CB) [> 3.7523 = 6.2538 < 8.1299] w=0.0102 to align # Constraint # added constraint: constraint((T0362)R14.CB, (T0362)A84.CB) [> 3.0015 = 5.0025 < 6.5032] w=0.0102 to align # Constraint # added constraint: constraint((T0362)F15.CB, (T0362)W32.CB) [> 4.1527 = 6.9212 < 8.9976] w=0.0102 to align # Constraint # added constraint: constraint((T0362)R10.CB, (T0362)E88.CB) [> 2.9468 = 4.9113 < 6.3847] w=0.0102 to align # Constraint # added constraint: constraint((T0362)P48.CB, (T0362)I68.CB) [> 3.6407 = 6.0679 < 7.8883] w=0.0102 to align # Constraint # added constraint: constraint((T0362)I51.CB, (T0362)Q100.CB) [> 3.8937 = 6.4895 < 8.4364] w=0.0102 to align # Constraint # added constraint: constraint((T0362)S43.CB, (T0362)C71.CB) [> 4.4257 = 7.3762 < 9.5890] w=0.0102 to align # Constraint # added constraint: constraint((T0362)Y44.CB, (T0362)I68.CB) [> 4.4611 = 7.4352 < 9.6657] w=0.0102 to align # Constraint # added constraint: constraint((T0362)Y44.CB, (T0362)C71.CB) [> 3.9116 = 6.5193 < 8.4750] w=0.0102 to align # Constraint # added constraint: constraint((T0362)F26.CB, (T0362)Q72.CB) [> 3.9593 = 6.5989 < 8.5786] w=0.0079 to align # Constraint # added constraint: constraint((T0362)C33.CB, (T0362)H70.CB) [> 4.5059 = 7.5098 < 9.7627] w=0.0079 to align # Constraint # added constraint: constraint((T0362)C33.CB, (T0362)Q72.CB) [> 4.3178 = 7.1963 < 9.3552] w=0.0079 to align # Constraint # added constraint: constraint((T0362)Q72.CB, (T0362)A113.CB) [> 4.2449 = 7.0749 < 9.1973] w=0.0079 to align # Constraint # added constraint: constraint((T0362)L8.CB, (T0362)A84.CB) [> 3.2626 = 5.4376 < 7.0689] w=0.0021 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0362/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0362/decoys/ # ReadConformPDB reading from PDB file tr362.gromacs0.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 126 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr362.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr362.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file tr362.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-tr362-1s5uA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-tr362-1s5uA # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0362)A142.C and (T0362)S143.N only 0 apart, marking (T0362)S143.N as missing WARNING: atoms too close: (T0362)S143.N and (T0362)S143.CA only 0 apart, marking (T0362)S143.CA as missing WARNING: atoms too close: (T0362)A142.C and (T0362)S143.CA only 0 apart, marking (T0362)S143.CA as missing WARNING: atoms too close: (T0362)S143.CA and (T0362)S143.CB only 0 apart, marking (T0362)S143.CB as missing WARNING: atoms too close: (T0362)S143.N and (T0362)S143.CB only 0 apart, marking (T0362)S143.CB as missing WARNING: atoms too close: (T0362)A142.C and (T0362)S143.CB only 0 apart, marking (T0362)S143.CB as missing WARNING: atoms too close: (T0362)S143.CB and (T0362)S143.OG only 0 apart, marking (T0362)S143.OG as missing WARNING: atoms too close: (T0362)S143.CA and (T0362)S143.OG only 0 apart, marking (T0362)S143.OG as missing WARNING: atoms too close: (T0362)S143.N and (T0362)S143.OG only 0 apart, marking (T0362)S143.OG as missing WARNING: atoms too close: (T0362)A142.C and (T0362)S143.OG only 0 apart, marking (T0362)S143.OG as missing WARNING: atoms too close: (T0362)S143.OG and (T0362)S143.O only 0 apart, marking (T0362)S143.O as missing WARNING: atoms too close: (T0362)S143.CB and (T0362)S143.O only 0 apart, marking (T0362)S143.O as missing WARNING: atoms too close: (T0362)S143.CA and (T0362)S143.O only 0 apart, marking (T0362)S143.O as missing WARNING: atoms too close: (T0362)S143.N and (T0362)S143.O only 0 apart, marking (T0362)S143.O as missing WARNING: atoms too close: (T0362)A142.C and (T0362)S143.O only 0 apart, marking (T0362)S143.O as missing WARNING: atoms too close: (T0362)S143.O and (T0362)S143.C only 0 apart, marking (T0362)S143.C as missing WARNING: atoms too close: (T0362)S143.OG and (T0362)S143.C only 0 apart, marking (T0362)S143.C as missing WARNING: atoms too close: (T0362)S143.CB and (T0362)S143.C only 0 apart, marking (T0362)S143.C as missing WARNING: atoms too close: (T0362)S143.CA and (T0362)S143.C only 0 apart, marking (T0362)S143.C as missing WARNING: atoms too close: (T0362)S143.N and (T0362)S143.C only 0 apart, marking (T0362)S143.C as missing WARNING: atoms too close: (T0362)A142.C and (T0362)S143.C only 0 apart, marking (T0362)S143.C as missing # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 9 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 Skipped atom 83, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 Skipped atom 83, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 Skipped atom 163, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL5.pdb.gz Skipped atom 232, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL5.pdb.gz # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 143 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 145 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 23 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 28 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 52 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0362)D50.N and (T0362)I51.N only 0.000 apart, marking (T0362)I51.N as missing WARNING: atoms too close: (T0362)D50.CA and (T0362)I51.CA only 0.000 apart, marking (T0362)I51.CA as missing WARNING: atoms too close: (T0362)D50.CB and (T0362)I51.CB only 0.000 apart, marking (T0362)I51.CB as missing WARNING: atoms too close: (T0362)D50.O and (T0362)I51.O only 0.000 apart, marking (T0362)I51.O as missing WARNING: atoms too close: (T0362)D50.C and (T0362)I51.C only 0.000 apart, marking (T0362)I51.C as missing WARNING: atoms too close: (T0362)I51.N and (T0362)F52.N only 0.000 apart, marking (T0362)I51.N as missing WARNING: atoms too close: (T0362)D50.N and (T0362)F52.N only 0.000 apart, marking (T0362)F52.N as missing WARNING: atoms too close: (T0362)I51.CA and (T0362)F52.CA only 0.000 apart, marking (T0362)F52.CA as missing WARNING: atoms too close: (T0362)D50.CA and (T0362)F52.CA only 0.000 apart, marking (T0362)F52.CA as missing WARNING: atoms too close: (T0362)I51.CB and (T0362)F52.CB only 0.000 apart, marking (T0362)F52.CB as missing WARNING: atoms too close: (T0362)D50.CB and (T0362)F52.CB only 0.000 apart, marking (T0362)F52.CB as missing WARNING: atoms too close: (T0362)I51.O and (T0362)F52.O only 0.000 apart, marking (T0362)F52.O as missing WARNING: atoms too close: (T0362)D50.O and (T0362)F52.O only 0.000 apart, marking (T0362)F52.O as missing WARNING: atoms too close: (T0362)I51.C and (T0362)F52.C only 0.000 apart, marking (T0362)F52.C as missing WARNING: atoms too close: (T0362)D50.C and (T0362)F52.C only 0.000 apart, marking (T0362)F52.C as missing WARNING: atoms too close: (T0362)F52.N and (T0362)P53.N only 0.000 apart, marking (T0362)F52.N as missing WARNING: atoms too close: (T0362)I51.N and (T0362)P53.N only 0.000 apart, marking (T0362)I51.N as missing WARNING: atoms too close: (T0362)D50.N and (T0362)P53.N only 0.000 apart, marking (T0362)P53.N as missing WARNING: atoms too close: (T0362)F52.CA and (T0362)P53.CA only 0.000 apart, marking (T0362)P53.CA as missing WARNING: atoms too close: (T0362)I51.CA and (T0362)P53.CA only 0.000 apart, marking (T0362)P53.CA as missing WARNING: atoms too close: (T0362)D50.CA and (T0362)P53.CA only 0.000 apart, marking (T0362)P53.CA as missing WARNING: atoms too close: (T0362)F52.CB and (T0362)P53.CB only 0.000 apart, marking (T0362)P53.CB as missing WARNING: atoms too close: (T0362)I51.CB and (T0362)P53.CB only 0.000 apart, marking (T0362)P53.CB as missing WARNING: atoms too close: (T0362)D50.CB and (T0362)P53.CB only 0.000 apart, marking (T0362)P53.CB as missing WARNING: atoms too close: (T0362)F52.O and (T0362)P53.O only 0.000 apart, marking (T0362)P53.O as missing WARNING: atoms too close: (T0362)I51.O and (T0362)P53.O only 0.000 apart, marking (T0362)P53.O as missing WARNING: atoms too close: (T0362)D50.O and (T0362)P53.O only 0.000 apart, marking (T0362)P53.O as missing WARNING: atoms too close: (T0362)F52.C and (T0362)P53.C only 0.000 apart, marking (T0362)P53.C as missing WARNING: atoms too close: (T0362)I51.C and (T0362)P53.C only 0.000 apart, marking (T0362)P53.C as missing WARNING: atoms too close: (T0362)D50.C and (T0362)P53.C only 0.000 apart, marking (T0362)P53.C as missing WARNING: atoms too close: (T0362)P53.N and (T0362)G54.N only 0.000 apart, marking (T0362)P53.N as missing WARNING: atoms too close: (T0362)F52.N and (T0362)G54.N only 0.000 apart, marking (T0362)F52.N as missing WARNING: atoms too close: (T0362)I51.N and (T0362)G54.N only 0.000 apart, marking (T0362)I51.N as missing WARNING: atoms too close: (T0362)D50.N and (T0362)G54.N only 0.000 apart, marking (T0362)G54.N as missing WARNING: atoms too close: (T0362)P53.CA and (T0362)G54.CA only 0.000 apart, marking (T0362)G54.CA as missing WARNING: atoms too close: (T0362)F52.CA and (T0362)G54.CA only 0.000 apart, marking (T0362)G54.CA as missing WARNING: atoms too close: (T0362)I51.CA and (T0362)G54.CA only 0.000 apart, marking (T0362)G54.CA as missing WARNING: atoms too close: (T0362)D50.CA and (T0362)G54.CA only 0.000 apart, marking (T0362)G54.CA as missing WARNING: atoms too close: (T0362)P53.O and (T0362)G54.O only 0.000 apart, marking (T0362)G54.O as missing WARNING: atoms too close: (T0362)F52.O and (T0362)G54.O only 0.000 apart, marking (T0362)G54.O as missing WARNING: atoms too close: (T0362)I51.O and (T0362)G54.O only 0.000 apart, marking (T0362)G54.O as missing WARNING: atoms too close: (T0362)D50.O and (T0362)G54.O only 0.000 apart, marking (T0362)G54.O as missing WARNING: atoms too close: (T0362)P53.C and (T0362)G54.C only 0.000 apart, marking (T0362)G54.C as missing WARNING: atoms too close: (T0362)F52.C and (T0362)G54.C only 0.000 apart, marking (T0362)G54.C as missing WARNING: atoms too close: (T0362)I51.C and (T0362)G54.C only 0.000 apart, marking (T0362)G54.C as missing WARNING: atoms too close: (T0362)D50.C and (T0362)G54.C only 0.000 apart, marking (T0362)G54.C as missing WARNING: atoms too close: (T0362)G54.N and (T0362)S55.N only 0.000 apart, marking (T0362)G54.N as missing WARNING: atoms too close: (T0362)P53.N and (T0362)S55.N only 0.000 apart, marking (T0362)P53.N as missing WARNING: atoms too close: (T0362)F52.N and (T0362)S55.N only 0.000 apart, marking (T0362)F52.N as missing WARNING: atoms too close: (T0362)I51.N and (T0362)S55.N only 0.000 apart, marking (T0362)I51.N as missing WARNING: atoms too close: (T0362)D50.N and (T0362)S55.N only 0.000 apart, marking (T0362)S55.N as missing WARNING: atoms too close: (T0362)G54.CA and (T0362)S55.CA only 0.000 apart, marking (T0362)S55.CA as missing WARNING: atoms too close: (T0362)P53.CA and (T0362)S55.CA only 0.000 apart, marking (T0362)S55.CA as missing WARNING: atoms too close: (T0362)F52.CA and (T0362)S55.CA only 0.000 apart, marking (T0362)S55.CA as missing WARNING: atoms too close: (T0362)I51.CA and (T0362)S55.CA only 0.000 apart, marking (T0362)S55.CA as missing WARNING: atoms too close: (T0362)D50.CA and (T0362)S55.CA only 0.000 apart, marking (T0362)S55.CA as missing WARNING: atoms too close: (T0362)P53.CB and (T0362)S55.CB only 0.000 apart, marking (T0362)S55.CB as missing WARNING: atoms too close: (T0362)F52.CB and (T0362)S55.CB only 0.000 apart, marking (T0362)S55.CB as missing WARNING: atoms too close: (T0362)I51.CB and (T0362)S55.CB only 0.000 apart, marking (T0362)S55.CB as missing WARNING: atoms too close: (T0362)D50.CB and (T0362)S55.CB only 0.000 apart, marking (T0362)S55.CB as missing WARNING: atoms too close: (T0362)G54.O and (T0362)S55.O only 0.000 apart, marking (T0362)S55.O as missing WARNING: atoms too close: (T0362)P53.O and (T0362)S55.O only 0.000 apart, marking (T0362)S55.O as missing WARNING: atoms too close: (T0362)F52.O and (T0362)S55.O only 0.000 apart, marking (T0362)S55.O as missing WARNING: atoms too close: (T0362)I51.O and (T0362)S55.O only 0.000 apart, marking (T0362)S55.O as missing WARNING: atoms too close: (T0362)D50.O and (T0362)S55.O only 0.000 apart, marking (T0362)S55.O as missing WARNING: atoms too close: (T0362)G54.C and (T0362)S55.C only 0.000 apart, marking (T0362)S55.C as missing WARNING: atoms too close: (T0362)P53.C and (T0362)S55.C only 0.000 apart, marking (T0362)S55.C as missing WARNING: atoms too close: (T0362)F52.C and (T0362)S55.C only 0.000 apart, marking (T0362)S55.C as missing WARNING: atoms too close: (T0362)I51.C and (T0362)S55.C only 0.000 apart, marking (T0362)S55.C as missing WARNING: atoms too close: (T0362)D50.C and (T0362)S55.C only 0.000 apart, marking (T0362)S55.C as missing # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0362 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 261 model score -0.6066 model score -0.6131 model score -0.6098 model score -0.6146 model score -0.6146 model score -0.4819 model score -0.5523 model score -0.3275 model score -0.1824 model score -0.2351 model score -0.2439 model score -0.5279 model score -0.5194 model score -0.2377 model score -0.2550 model score 0.0102 model score -0.2700 model score -0.3168 model score -0.3384 model score -0.3432 model score -0.6430 model score -0.6181 model score -0.5410 model score -0.4505 model score -0.5551 model score 1.2953 model score 1.2247 model score 1.3636 model score 1.3207 model score 1.3694 model score -0.6459 model score -0.6509 model score -0.4600 model score -0.5338 model score -0.6103 model score -0.4781 model score -0.5435 model score -0.5294 model score -0.5508 model score -0.4129 model score -0.6333 model score -0.2601 model score -0.5324 model score -0.4968 model score -0.6553 model score -0.6357 model score -0.5641 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.5229 model score -0.4980 model score -0.5016 model score -0.6333 model score -0.4995 model score -0.3687 model score -0.5435 model score -0.5508 model score -0.5294 model score -0.4994 model score -0.5869 model score -0.5935 model score -0.4863 model score -0.5469 model score -0.4540 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.1872 model score 2.2865 model score 2.1840 model score 2.3071 model score 1.8939 model score -0.5355 model score -0.5816 model score -0.5381 model score -0.3931 model score -0.1986 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.4637 model score -0.5145 model score -0.5325 model score -0.5362 model score -0.4994 model score -0.6301 model score -0.5843 model score -0.5203 model score -0.5547 model score -0.5788 model score -0.5456 model score -0.6476 model score -0.6476 model score -0.5106 model score -0.3848 model score -0.6305 model score -0.3790 model score -0.6033 model score -0.4583 model score -0.3755 model score -0.5095 model score -0.5695 model score -0.4308 model score 1.2771 model score -0.6615 model score -0.6225 model score -0.4897 model score -0.5884 model score -0.5718 model score -0.6225 model score -0.5263 model score -0.5384 model score -0.5430 model score -0.5903 model score -0.4913 model score -0.6675 model score -0.6239 model score -0.5277 model score -0.6339 model score -0.4583 model score -0.6136 model score -0.6176 model score -0.6188 model score -0.6225 model score -0.6147 model score -0.6268 model score -0.6136 model score -0.5758 model score -0.6225 model score -0.6130 model score -0.6451 model score -0.6355 model score -0.5888 model score -0.6173 model score -0.5341 model score -0.6560 model score -0.6444 model score -0.6415 model score -0.6425 model score -0.6427 model score -0.6419 model score -0.5532 model score -0.5703 model score -0.6106 model score -0.6548 model score -0.5424 model score -0.5886 model score -0.6587 model score -0.5296 model score -0.5927 model score -0.6016 model score -0.5680 model score -0.5508 model score -0.5605 model score -0.5397 model score -0.4668 model score -0.6476 model score -0.6450 model score -0.5853 model score -0.6627 model score -0.5632 model score -0.5532 model score -0.5453 model score -0.5573 model score -0.5424 model score -0.5703 model score -0.6362 model score -0.5351 model score -0.4700 model score -0.5251 model score -0.5754 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.6443 model score -0.6498 model score -0.6350 model score -0.6175 model score 0.1285 model score -0.6466 model score -0.5631 model score -0.5724 model score -0.5317 model score -0.5137 model score -0.5763 model score -0.6502 model score -0.5501 model score -0.5295 model score -0.5415 model score -0.6466 model score -0.5631 model score -0.5351 model score -0.5228 model score -0.5283 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.6457 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.6388 model score -0.6279 model score -0.6347 model score -0.6131 model score -0.6285 model score -0.6030 model score -0.6245 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.8836 model score 1.3023 model score 1.4700 model score 1.3386 model score 1.3848 model score 1.2393 model score 2.1254 model score 2.4520 model score 1.6880 model score 2.3342 model score -0.6524 model score -0.6111 model score -0.3803 model score -0.4843 model score -0.5808 model score -0.6097 model score -0.5634 model score -0.5857 model score -0.5657 model score -0.6055 model score -0.5359 model score -0.5337 model score -0.4511 model score -0.5726 model score -0.6079 model score -0.4149 model score -0.5862 weight: 0.9824 eval: -0.6066 min: -0.6675 max: 2.4520 weight: 0.9843 eval: -0.6131 min: -0.6675 max: 2.4520 weight: 0.9833 eval: -0.6098 min: -0.6675 max: 2.4520 weight: 0.9847 eval: -0.6146 min: -0.6675 max: 2.4520 weight: 0.9847 eval: -0.6146 min: -0.6675 max: 2.4520 weight: 0.9464 eval: -0.4819 min: -0.6675 max: 2.4520 weight: 0.9668 eval: -0.5523 min: -0.6675 max: 2.4520 weight: 0.9019 eval: -0.3275 min: -0.6675 max: 2.4520 weight: 0.8600 eval: -0.1824 min: -0.6675 max: 2.4520 weight: 0.8752 eval: -0.2351 min: -0.6675 max: 2.4520 weight: 0.8778 eval: -0.2439 min: -0.6675 max: 2.4520 weight: 0.9597 eval: -0.5279 min: -0.6675 max: 2.4520 weight: 0.9573 eval: -0.5194 min: -0.6675 max: 2.4520 weight: 0.8760 eval: -0.2377 min: -0.6675 max: 2.4520 weight: 0.8810 eval: -0.2550 min: -0.6675 max: 2.4520 weight: 0.8045 eval: 0.0102 min: -0.6675 max: 2.4520 weight: 0.8853 eval: -0.2700 min: -0.6675 max: 2.4520 weight: 0.8988 eval: -0.3168 min: -0.6675 max: 2.4520 weight: 0.9051 eval: -0.3384 min: -0.6675 max: 2.4520 weight: 0.9064 eval: -0.3432 min: -0.6675 max: 2.4520 weight: 0.9929 eval: -0.6430 min: -0.6675 max: 2.4520 weight: 0.9858 eval: -0.6181 min: -0.6675 max: 2.4520 weight: 0.9635 eval: -0.5410 min: -0.6675 max: 2.4520 weight: 0.9374 eval: -0.4505 min: -0.6675 max: 2.4520 weight: 0.9676 eval: -0.5551 min: -0.6675 max: 2.4520 weight: 0.4337 eval: 1.2953 min: -0.6675 max: 2.4520 weight: 0.4541 eval: 1.2247 min: -0.6675 max: 2.4520 weight: 0.4140 eval: 1.3636 min: -0.6675 max: 2.4520 weight: 0.4264 eval: 1.3207 min: -0.6675 max: 2.4520 weight: 0.4123 eval: 1.3694 min: -0.6675 max: 2.4520 weight: 0.9938 eval: -0.6459 min: -0.6675 max: 2.4520 weight: 0.9952 eval: -0.6509 min: -0.6675 max: 2.4520 weight: 0.9401 eval: -0.4600 min: -0.6675 max: 2.4520 weight: 0.9614 eval: -0.5338 min: -0.6675 max: 2.4520 weight: 0.9835 eval: -0.6103 min: -0.6675 max: 2.4520 weight: 0.9453 eval: -0.4781 min: -0.6675 max: 2.4520 weight: 0.9642 eval: -0.5435 min: -0.6675 max: 2.4520 weight: 0.9602 eval: -0.5294 min: -0.6675 max: 2.4520 weight: 0.9663 eval: -0.5508 min: -0.6675 max: 2.4520 weight: 0.9265 eval: -0.4129 min: -0.6675 max: 2.4520 weight: 0.9901 eval: -0.6333 min: -0.6675 max: 2.4520 weight: 0.8825 eval: -0.2601 min: -0.6675 max: 2.4520 weight: 0.9610 eval: -0.5324 min: -0.6675 max: 2.4520 weight: 0.9508 eval: -0.4968 min: -0.6675 max: 2.4520 weight: 0.9965 eval: -0.6553 min: -0.6675 max: 2.4520 weight: 0.9908 eval: -0.6357 min: -0.6675 max: 2.4520 weight: 0.9702 eval: -0.5641 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.9583 eval: -0.5229 min: -0.6675 max: 2.4520 weight: 0.9511 eval: -0.4980 min: -0.6675 max: 2.4520 weight: 0.9521 eval: -0.5016 min: -0.6675 max: 2.4520 weight: 0.9901 eval: -0.6333 min: -0.6675 max: 2.4520 weight: 0.9515 eval: -0.4995 min: -0.6675 max: 2.4520 weight: 0.9138 eval: -0.3687 min: -0.6675 max: 2.4520 weight: 0.9642 eval: -0.5435 min: -0.6675 max: 2.4520 weight: 0.9663 eval: -0.5508 min: -0.6675 max: 2.4520 weight: 0.9602 eval: -0.5294 min: -0.6675 max: 2.4520 weight: 0.9515 eval: -0.4994 min: -0.6675 max: 2.4520 weight: 0.9767 eval: -0.5869 min: -0.6675 max: 2.4520 weight: 0.9786 eval: -0.5935 min: -0.6675 max: 2.4520 weight: 0.9477 eval: -0.4863 min: -0.6675 max: 2.4520 weight: 0.9652 eval: -0.5469 min: -0.6675 max: 2.4520 weight: 0.9384 eval: -0.4540 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.1764 eval: 2.1872 min: -0.6675 max: 2.4520 weight: 0.1478 eval: 2.2865 min: -0.6675 max: 2.4520 weight: 0.1773 eval: 2.1840 min: -0.6675 max: 2.4520 weight: 0.1418 eval: 2.3071 min: -0.6675 max: 2.4520 weight: 0.2610 eval: 1.8939 min: -0.6675 max: 2.4520 weight: 0.9619 eval: -0.5355 min: -0.6675 max: 2.4520 weight: 0.9752 eval: -0.5816 min: -0.6675 max: 2.4520 weight: 0.9627 eval: -0.5381 min: -0.6675 max: 2.4520 weight: 0.9208 eval: -0.3931 min: -0.6675 max: 2.4520 weight: 0.8647 eval: -0.1986 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.9412 eval: -0.4637 min: -0.6675 max: 2.4520 weight: 0.9559 eval: -0.5145 min: -0.6675 max: 2.4520 weight: 0.9610 eval: -0.5325 min: -0.6675 max: 2.4520 weight: 0.9621 eval: -0.5362 min: -0.6675 max: 2.4520 weight: 0.9515 eval: -0.4994 min: -0.6675 max: 2.4520 weight: 0.9892 eval: -0.6301 min: -0.6675 max: 2.4520 weight: 0.9760 eval: -0.5843 min: -0.6675 max: 2.4520 weight: 0.9575 eval: -0.5203 min: -0.6675 max: 2.4520 weight: 0.9674 eval: -0.5547 min: -0.6675 max: 2.4520 weight: 0.9744 eval: -0.5788 min: -0.6675 max: 2.4520 weight: 0.9648 eval: -0.5456 min: -0.6675 max: 2.4520 weight: 0.9943 eval: -0.6476 min: -0.6675 max: 2.4520 weight: 0.9943 eval: -0.6476 min: -0.6675 max: 2.4520 weight: 0.9547 eval: -0.5106 min: -0.6675 max: 2.4520 weight: 0.9184 eval: -0.3848 min: -0.6675 max: 2.4520 weight: 0.9893 eval: -0.6305 min: -0.6675 max: 2.4520 weight: 0.9168 eval: -0.3790 min: -0.6675 max: 2.4520 weight: 0.9815 eval: -0.6033 min: -0.6675 max: 2.4520 weight: 0.9396 eval: -0.4583 min: -0.6675 max: 2.4520 weight: 0.9158 eval: -0.3755 min: -0.6675 max: 2.4520 weight: 0.9544 eval: -0.5095 min: -0.6675 max: 2.4520 weight: 0.9717 eval: -0.5695 min: -0.6675 max: 2.4520 weight: 0.9317 eval: -0.4308 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.9983 eval: -0.6615 min: -0.6675 max: 2.4520 weight: 0.9870 eval: -0.6225 min: -0.6675 max: 2.4520 weight: 0.9487 eval: -0.4897 min: -0.6675 max: 2.4520 weight: 0.9772 eval: -0.5884 min: -0.6675 max: 2.4520 weight: 0.9724 eval: -0.5718 min: -0.6675 max: 2.4520 weight: 0.9870 eval: -0.6225 min: -0.6675 max: 2.4520 weight: 0.9593 eval: -0.5263 min: -0.6675 max: 2.4520 weight: 0.9628 eval: -0.5384 min: -0.6675 max: 2.4520 weight: 0.9641 eval: -0.5430 min: -0.6675 max: 2.4520 weight: 0.9777 eval: -0.5903 min: -0.6675 max: 2.4520 weight: 0.9492 eval: -0.4913 min: -0.6675 max: 2.4520 weight: 1.0000 eval: -0.6675 min: -0.6675 max: 2.4520 weight: 0.9874 eval: -0.6239 min: -0.6675 max: 2.4520 weight: 0.9597 eval: -0.5277 min: -0.6675 max: 2.4520 weight: 0.9903 eval: -0.6339 min: -0.6675 max: 2.4520 weight: 0.9396 eval: -0.4583 min: -0.6675 max: 2.4520 weight: 0.9844 eval: -0.6136 min: -0.6675 max: 2.4520 weight: 0.9856 eval: -0.6176 min: -0.6675 max: 2.4520 weight: 0.9859 eval: -0.6188 min: -0.6675 max: 2.4520 weight: 0.9870 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eval: -0.5632 min: -0.6675 max: 2.4520 weight: 0.9670 eval: -0.5532 min: -0.6675 max: 2.4520 weight: 0.9648 eval: -0.5453 min: -0.6675 max: 2.4520 weight: 0.9682 eval: -0.5573 min: -0.6675 max: 2.4520 weight: 0.9639 eval: -0.5424 min: -0.6675 max: 2.4520 weight: 0.9719 eval: -0.5703 min: -0.6675 max: 2.4520 weight: 0.9910 eval: -0.6362 min: -0.6675 max: 2.4520 weight: 0.9618 eval: -0.5351 min: -0.6675 max: 2.4520 weight: 0.9430 eval: -0.4700 min: -0.6675 max: 2.4520 weight: 0.9589 eval: -0.5251 min: -0.6675 max: 2.4520 weight: 0.9734 eval: -0.5754 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.9933 eval: -0.6443 min: -0.6675 max: 2.4520 weight: 0.9949 eval: -0.6498 min: -0.6675 max: 2.4520 weight: 0.9906 eval: -0.6350 min: -0.6675 max: 2.4520 weight: 0.9856 eval: -0.6175 min: -0.6675 max: 2.4520 weight: 0.7703 eval: 0.1285 min: -0.6675 max: 2.4520 weight: 0.9940 eval: -0.6466 min: -0.6675 max: 2.4520 weight: 0.9699 eval: -0.5631 min: -0.6675 max: 2.4520 weight: 0.9726 eval: -0.5724 min: -0.6675 max: 2.4520 weight: 0.9608 eval: -0.5317 min: -0.6675 max: 2.4520 weight: 0.9556 eval: -0.5137 min: -0.6675 max: 2.4520 weight: 0.9737 eval: -0.5763 min: -0.6675 max: 2.4520 weight: 0.9950 eval: -0.6502 min: -0.6675 max: 2.4520 weight: 0.9661 eval: -0.5501 min: -0.6675 max: 2.4520 weight: 0.9602 eval: -0.5295 min: -0.6675 max: 2.4520 weight: 0.9636 eval: -0.5415 min: -0.6675 max: 2.4520 weight: 0.9940 eval: -0.6466 min: -0.6675 max: 2.4520 weight: 0.9699 eval: -0.5631 min: -0.6675 max: 2.4520 weight: 0.9618 eval: -0.5351 min: -0.6675 max: 2.4520 weight: 0.9582 eval: -0.5228 min: -0.6675 max: 2.4520 weight: 0.9598 eval: -0.5283 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.9937 eval: -0.6457 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.9917 eval: -0.6388 min: -0.6675 max: 2.4520 weight: 0.9886 eval: -0.6279 min: -0.6675 max: 2.4520 weight: 0.9905 eval: -0.6347 min: -0.6675 max: 2.4520 weight: 0.9843 eval: -0.6131 min: -0.6675 max: 2.4520 weight: 0.9887 eval: -0.6285 min: -0.6675 max: 2.4520 weight: 0.9814 eval: -0.6030 min: -0.6675 max: 2.4520 weight: 0.9876 eval: -0.6245 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.4390 eval: 1.2771 min: -0.6675 max: 2.4520 weight: 0.5525 eval: 0.8836 min: -0.6675 max: 2.4520 weight: 0.4317 eval: 1.3023 min: -0.6675 max: 2.4520 weight: 0.3833 eval: 1.4700 min: -0.6675 max: 2.4520 weight: 0.4212 eval: 1.3386 min: -0.6675 max: 2.4520 weight: 0.4079 eval: 1.3848 min: -0.6675 max: 2.4520 weight: 0.4499 eval: 1.2393 min: -0.6675 max: 2.4520 weight: 0.1942 eval: 2.1254 min: -0.6675 max: 2.4520 weight: 0.1000 eval: 2.4520 min: -0.6675 max: 2.4520 weight: 0.3204 eval: 1.6880 min: -0.6675 max: 2.4520 weight: 0.1340 eval: 2.3342 min: -0.6675 max: 2.4520 weight: 0.9956 eval: -0.6524 min: -0.6675 max: 2.4520 weight: 0.9837 eval: -0.6111 min: -0.6675 max: 2.4520 weight: 0.9171 eval: -0.3803 min: -0.6675 max: 2.4520 weight: 0.9471 eval: -0.4843 min: -0.6675 max: 2.4520 weight: 0.9750 eval: -0.5808 min: -0.6675 max: 2.4520 weight: 0.9833 eval: -0.6097 min: -0.6675 max: 2.4520 weight: 0.9700 eval: -0.5634 min: -0.6675 max: 2.4520 weight: 0.9764 eval: -0.5857 min: -0.6675 max: 2.4520 weight: 0.9706 eval: -0.5657 min: -0.6675 max: 2.4520 weight: 0.9821 eval: -0.6055 min: -0.6675 max: 2.4520 weight: 0.9620 eval: -0.5359 min: -0.6675 max: 2.4520 weight: 0.9614 eval: -0.5337 min: -0.6675 max: 2.4520 weight: 0.9376 eval: -0.4511 min: -0.6675 max: 2.4520 weight: 0.9726 eval: -0.5726 min: -0.6675 max: 2.4520 weight: 0.9828 eval: -0.6079 min: -0.6675 max: 2.4520 weight: 0.9271 eval: -0.4149 min: -0.6675 max: 2.4520 weight: 0.9765 eval: -0.5862 min: -0.6675 max: 2.4520 Adding 4003 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -260.5141, CN propb: -260.5141 weights: 0.3883 constraints: 518 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 518 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 518 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 3485 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 3485 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 4003 # command: