# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0361/ # command:# Making conformation for sequence T0361 numbered 1 through 169 Created new target T0361 from T0361.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0361/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0361//projects/compbio/experiments/protein-predict/casp7/T0361/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0361//projects/compbio/experiments/protein-predict/casp7/T0361/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0361/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0361/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0361)L98.CB, (T0361)T112.CB) [> 3.7854 = 6.3090 < 8.2017] w=1.0000 to align # Constraint # added constraint: constraint((T0361)Y97.CB, (T0361)F115.CB) [> 3.7851 = 6.3085 < 8.2011] w=0.9526 to align # Constraint # added constraint: constraint((T0361)L98.CB, (T0361)F115.CB) [> 3.6047 = 6.0079 < 7.8102] w=0.9283 to align # Constraint # added constraint: constraint((T0361)F91.CB, (T0361)I116.CB) [> 3.8703 = 6.4505 < 8.3857] w=0.9193 to align # Constraint # added constraint: constraint((T0361)F37.CB, (T0361)A53.CB) [> 3.5743 = 5.9571 < 7.7443] w=0.9007 to align # Constraint # added constraint: constraint((T0361)W95.CB, (T0361)T112.CB) [> 3.9739 = 6.6232 < 8.6101] w=0.8540 to align # Constraint # added constraint: constraint((T0361)F91.CB, (T0361)T112.CB) [> 3.6200 = 6.0333 < 7.8433] w=0.8392 to align # Constraint # added constraint: constraint((T0361)I88.CB, (T0361)V119.CB) [> 3.7738 = 6.2896 < 8.1765] w=0.8294 to align # Constraint # added constraint: constraint((T0361)L58.CB, (T0361)Y94.CB) [> 3.9954 = 6.6590 < 8.6567] w=0.8124 to align # Constraint # added constraint: constraint((T0361)V119.CB, (T0361)T163.CB) [> 3.8556 = 6.4260 < 8.3538] w=0.7779 to align # Constraint # added constraint: constraint((T0361)F148.CB, (T0361)T157.CB) [> 3.9521 = 6.5869 < 8.5630] w=0.7733 to align # Constraint # added constraint: constraint((T0361)R147.CB, (T0361)L156.CB) [> 3.5334 = 5.8890 < 7.6557] w=0.7520 to align # Constraint # added constraint: constraint((T0361)A126.CB, (T0361)F140.CB) [> 3.6767 = 6.1279 < 7.9663] w=0.7351 to align # Constraint # added constraint: constraint((T0361)Y85.CB, (T0361)N120.CB) [> 3.9186 = 6.5311 < 8.4904] w=0.7252 to align # Constraint # added constraint: constraint((T0361)W95.CB, (T0361)I116.CB) [> 4.2217 = 7.0361 < 9.1469] w=0.7230 to align # Constraint # added constraint: constraint((T0361)L98.CB, (T0361)F107.CB) [> 3.7005 = 6.1675 < 8.0178] w=0.7230 to align # Constraint # added constraint: constraint((T0361)V54.CB, (T0361)I116.CB) [> 4.0360 = 6.7266 < 8.7446] w=0.7063 to align # Constraint # added constraint: constraint((T0361)T112.CB, (T0361)L156.CB) [> 3.5236 = 5.8727 < 7.6344] w=0.6954 to align # Constraint # added constraint: constraint((T0361)L77.CB, (T0361)F91.CB) [> 3.8057 = 6.3428 < 8.2456] w=0.6898 to align # Constraint # added constraint: constraint((T0361)D87.CB, (T0361)T163.CB) [> 4.3801 = 7.3002 < 9.4902] w=0.6858 to align # Constraint # added constraint: constraint((T0361)W95.CB, (T0361)W113.CB) [> 4.0907 = 6.8179 < 8.8632] w=0.6768 to align # Constraint # added constraint: constraint((T0361)W95.CB, (T0361)D109.CB) [> 4.1138 = 6.8563 < 8.9132] w=0.6756 to align # Constraint # added constraint: constraint((T0361)D109.CB, (T0361)R147.CB) [> 4.2179 = 7.0299 < 9.1388] w=0.6734 to align # Constraint # added constraint: constraint((T0361)T89.CB, (T0361)N120.CB) [> 4.3976 = 7.3294 < 9.5282] w=0.6703 to align # Constraint # added constraint: constraint((T0361)L84.CB, (T0361)V119.CB) [> 4.3715 = 7.2858 < 9.4715] w=0.6703 to align # Constraint # added constraint: constraint((T0361)L98.CB, (T0361)I116.CB) [> 4.0489 = 6.7481 < 8.7725] w=0.6619 to align # Constraint # added constraint: constraint((T0361)Y94.CB, (T0361)T163.CB) [> 3.7882 = 6.3137 < 8.2078] w=0.6443 to align # Constraint # added constraint: constraint((T0361)I34.CB, (T0361)A53.CB) [> 3.8538 = 6.4230 < 8.3499] w=0.6349 to align # Constraint # added constraint: constraint((T0361)V54.CB, (T0361)Y94.CB) [> 3.7893 = 6.3155 < 8.2102] w=0.6298 to align # Constraint # added constraint: constraint((T0361)I122.CB, (T0361)W143.CB) [> 3.6839 = 6.1398 < 7.9817] w=0.6290 to align # Constraint # added constraint: constraint((T0361)L98.CB, (T0361)D109.CB) [> 4.3902 = 7.3170 < 9.5122] w=0.6286 to align # Constraint # added constraint: constraint((T0361)A26.CB, (T0361)F91.CB) [> 4.6122 = 7.6869 < 9.9930] w=0.6212 to align # Constraint # added constraint: constraint((T0361)T112.CB, (T0361)V160.CB) [> 4.1861 = 6.9769 < 9.0700] w=0.6212 to align # Constraint # added constraint: constraint((T0361)G78.CA, (T0361)D87.CB) [> 3.8252 = 6.3753 < 8.2879] w=0.6180 to align # Constraint # added constraint: constraint((T0361)L58.CB, (T0361)A70.CB) [> 3.3001 = 5.5001 < 7.1501] w=0.6170 to align # Constraint # added constraint: constraint((T0361)L41.CB, (T0361)V50.CB) [> 3.8386 = 6.3977 < 8.3170] w=0.6089 to align # Constraint # added constraint: constraint((T0361)Y94.CB, (T0361)I116.CB) [> 3.3122 = 5.5202 < 7.1763] w=0.6040 to align # Constraint # added constraint: constraint((T0361)L84.CB, (T0361)Y94.CB) [> 4.0706 = 6.7844 < 8.8197] w=0.6021 to align # Constraint # added constraint: constraint((T0361)S40.CB, (T0361)A53.CB) [> 4.3724 = 7.2874 < 9.4736] w=0.6017 to align # Constraint # added constraint: constraint((T0361)V9.CB, (T0361)F22.CB) [> 3.9507 = 6.5844 < 8.5598] w=0.5962 to align # Constraint # added constraint: constraint((T0361)L77.CB, (T0361)I88.CB) [> 3.6516 = 6.0860 < 7.9118] w=0.5912 to align # Constraint # added constraint: constraint((T0361)D109.CB, (T0361)S144.CB) [> 3.7884 = 6.3140 < 8.2082] w=0.5868 to align # Constraint # added constraint: constraint((T0361)Y94.CB, (T0361)W143.CB) [> 3.9179 = 6.5298 < 8.4887] w=0.5868 to align # Constraint # added constraint: constraint((T0361)D109.CB, (T0361)F148.CB) [> 3.7566 = 6.2611 < 8.1394] w=0.5848 to align # Constraint # added constraint: constraint((T0361)K24.CB, (T0361)A76.CB) [> 4.5327 = 7.5545 < 9.8209] w=0.5789 to align # Constraint # added constraint: constraint((T0361)F91.CB, (T0361)T163.CB) [> 4.4029 = 7.3382 < 9.5397] w=0.5754 to align # Constraint # added constraint: constraint((T0361)L128.CB, (T0361)R147.CB) [> 4.1077 = 6.8461 < 8.9000] w=0.5718 to align # Constraint # added constraint: constraint((T0361)F37.CB, (T0361)I49.CB) [> 4.2443 = 7.0739 < 9.1961] w=0.5712 to align # Constraint # added constraint: constraint((T0361)L58.CB, (T0361)L73.CB) [> 3.9324 = 6.5540 < 8.5203] w=0.5614 to align # Constraint # added constraint: constraint((T0361)A26.CB, (T0361)L57.CB) [> 3.6848 = 6.1413 < 7.9837] w=0.5547 to align # Constraint # added constraint: constraint((T0361)Y94.CB, (T0361)F140.CB) [> 4.2337 = 7.0562 < 9.1731] w=0.5507 to align # Constraint # added constraint: constraint((T0361)A131.CB, (T0361)F140.CB) [> 3.1436 = 5.2393 < 6.8111] w=0.5480 to align # Constraint # added constraint: constraint((T0361)L128.CB, (T0361)W143.CB) [> 3.5170 = 5.8617 < 7.6202] w=0.5444 to align # Constraint # added constraint: constraint((T0361)L30.CB, (T0361)L57.CB) [> 4.0570 = 6.7617 < 8.7902] w=0.5442 to align # Constraint # added constraint: constraint((T0361)S92.CB, (T0361)W113.CB) [> 4.3184 = 7.1974 < 9.3566] w=0.5410 to align # Constraint # added constraint: constraint((T0361)S40.CB, (T0361)I49.CB) [> 3.7286 = 6.2144 < 8.0787] w=0.5391 to align # Constraint # added constraint: constraint((T0361)L98.CB, (T0361)A108.CB) [> 4.4162 = 7.3604 < 9.5685] w=0.5292 to align # Constraint # added constraint: constraint((T0361)I34.CB, (T0361)Y75.CB) [> 3.5420 = 5.9033 < 7.6743] w=0.5169 to align # Constraint # added constraint: constraint((T0361)D87.CB, (T0361)A159.CB) [> 3.5973 = 5.9955 < 7.7941] w=0.5124 to align # Constraint # added constraint: constraint((T0361)L58.CB, (T0361)L98.CB) [> 3.4824 = 5.8040 < 7.5452] w=0.5050 to align # Constraint # added constraint: constraint((T0361)F148.CB, (T0361)V160.CB) [> 2.9718 = 4.9530 < 6.4389] w=0.5033 to align # Constraint # added constraint: constraint((T0361)L38.CB, (T0361)V50.CB) [> 3.6840 = 6.1400 < 7.9820] w=0.4987 to align # Constraint # added constraint: constraint((T0361)M23.CB, (T0361)V69.CB) [> 3.8833 = 6.4722 < 8.4138] w=0.4890 to align # Constraint # added constraint: constraint((T0361)F22.CB, (T0361)V69.CB) [> 3.6292 = 6.0486 < 7.8632] w=0.4890 to align # Constraint # added constraint: constraint((T0361)S92.CB, (T0361)I116.CB) [> 4.5994 = 7.6657 < 9.9654] w=0.4886 to align # Constraint # added constraint: constraint((T0361)I29.CB, (T0361)L57.CB) [> 4.1866 = 6.9776 < 9.0709] w=0.4845 to align # Constraint # added constraint: constraint((T0361)A26.CB, (T0361)L58.CB) [> 3.8454 = 6.4091 < 8.3318] w=0.4845 to align # Constraint # added constraint: constraint((T0361)I122.CB, (T0361)L132.CB) [> 3.5740 = 5.9567 < 7.7437] w=0.4840 to align # Constraint # added constraint: constraint((T0361)A26.CB, (T0361)Y94.CB) [> 4.3893 = 7.3155 < 9.5102] w=0.4803 to align # Constraint # added constraint: constraint((T0361)F37.CB, (T0361)K79.CB) [> 3.3013 = 5.5021 < 7.1528] w=0.4786 to align # Constraint # added constraint: constraint((T0361)Q36.CB, (T0361)A53.CB) [> 3.3078 = 5.5129 < 7.1668] w=0.4764 to align # Constraint # added constraint: constraint((T0361)H90.CB, (T0361)R147.CB) [> 3.4315 = 5.7192 < 7.4350] w=0.4763 to align # Constraint # added constraint: constraint((T0361)F91.CB, (T0361)R147.CB) [> 4.3675 = 7.2792 < 9.4629] w=0.4763 to align # Constraint # added constraint: constraint((T0361)Y94.CB, (T0361)R147.CB) [> 4.1067 = 6.8446 < 8.8979] w=0.4763 to align # Constraint # added constraint: constraint((T0361)L98.CB, (T0361)F140.CB) [> 4.0038 = 6.6730 < 8.6749] w=0.4763 to align # Constraint # added constraint: constraint((T0361)T112.CB, (T0361)T157.CB) [> 4.6540 = 7.7566 < 10.0836] w=0.4763 to align # Constraint # added constraint: constraint((T0361)F115.CB, (T0361)V160.CB) [> 4.1921 = 6.9868 < 9.0828] w=0.4763 to align # Constraint # added constraint: constraint((T0361)I116.CB, (T0361)R147.CB) [> 4.0849 = 6.8082 < 8.8507] w=0.4574 to align # Constraint # added constraint: constraint((T0361)L13.CB, (T0361)F22.CB) [> 3.6296 = 6.0494 < 7.8642] w=0.4574 to align # Constraint # added constraint: constraint((T0361)I49.CB, (T0361)V69.CB) [> 3.7576 = 6.2627 < 8.1416] w=0.4567 to align # Constraint # added constraint: constraint((T0361)M23.CB, (T0361)L73.CB) [> 3.3638 = 5.6063 < 7.2882] w=0.4566 to align # Constraint # added constraint: constraint((T0361)I34.CB, (T0361)I49.CB) [> 3.4114 = 5.6856 < 7.3913] w=0.4426 to align # Constraint # added constraint: constraint((T0361)F37.CB, (T0361)G78.CA) [> 4.7175 = 7.8625 < 10.2213] w=0.4403 to align # Constraint # added constraint: constraint((T0361)L38.CB, (T0361)L71.CB) [> 4.3030 = 7.1717 < 9.3232] w=0.4403 to align # Constraint # added constraint: constraint((T0361)L38.CB, (T0361)I74.CB) [> 3.4361 = 5.7269 < 7.4450] w=0.4403 to align # Constraint # added constraint: constraint((T0361)L41.CB, (T0361)I74.CB) [> 4.0930 = 6.8217 < 8.8682] w=0.4403 to align # Constraint # added constraint: constraint((T0361)L41.CB, (T0361)I88.CB) [> 4.4181 = 7.3636 < 9.5727] w=0.4403 to align # Constraint # added constraint: constraint((T0361)A76.CB, (T0361)K153.CB) [> 3.7293 = 6.2156 < 8.0802] w=0.4403 to align # Constraint # added constraint: constraint((T0361)A76.CB, (T0361)L156.CB) [> 3.2505 = 5.4174 < 7.0427] w=0.4403 to align # Constraint # added constraint: constraint((T0361)L77.CB, (T0361)V160.CB) [> 4.4226 = 7.3710 < 9.5824] w=0.4403 to align # Constraint # added constraint: constraint((T0361)H90.CB, (T0361)L164.CB) [> 3.7449 = 6.2415 < 8.1139] w=0.4403 to align # Constraint # added constraint: constraint((T0361)F91.CB, (T0361)V160.CB) [> 4.4485 = 7.4141 < 9.6383] w=0.4403 to align # Constraint # added constraint: constraint((T0361)L10.CB, (T0361)L19.CB) [> 3.9141 = 6.5236 < 8.4806] w=0.4403 to align # Constraint # added constraint: constraint((T0361)A131.CB, (T0361)W143.CB) [> 3.5970 = 5.9949 < 7.7934] w=0.4367 to align # Constraint # added constraint: constraint((T0361)H27.CB, (T0361)F91.CB) [> 3.4864 = 5.8107 < 7.5539] w=0.4359 to align # Constraint # added constraint: constraint((T0361)N118.CB, (T0361)R147.CB) [> 4.1670 = 6.9449 < 9.0284] w=0.4299 to align # Constraint # added constraint: constraint((T0361)L19.CB, (T0361)L64.CB) [> 3.6864 = 6.1441 < 7.9873] w=0.4271 to align # Constraint # added constraint: constraint((T0361)I116.CB, (T0361)V152.CB) [> 3.2728 = 5.4546 < 7.0910] w=0.4209 to align # Constraint # added constraint: constraint((T0361)L73.CB, (T0361)F91.CB) [> 3.9987 = 6.6645 < 8.6638] w=0.4188 to align # Constraint # added constraint: constraint((T0361)L58.CB, (T0361)I74.CB) [> 3.9302 = 6.5504 < 8.5155] w=0.4188 to align # Constraint # added constraint: constraint((T0361)I74.CB, (T0361)T112.CB) [> 4.1124 = 6.8541 < 8.9103] w=0.4184 to align # Constraint # added constraint: constraint((T0361)L38.CB, (T0361)A53.CB) [> 3.4301 = 5.7169 < 7.4319] w=0.4151 to align # Constraint # added constraint: constraint((T0361)V50.CB, (T0361)Q93.CB) [> 4.2884 = 7.1473 < 9.2915] w=0.4142 to align # Constraint # added constraint: constraint((T0361)M80.CB, (T0361)Y94.CB) [> 3.6319 = 6.0532 < 7.8691] w=0.4140 to align # Constraint # added constraint: constraint((T0361)V54.CB, (T0361)I88.CB) [> 4.3113 = 7.1854 < 9.3411] w=0.4140 to align # Constraint # added constraint: constraint((T0361)L73.CB, (T0361)I116.CB) [> 4.5378 = 7.5631 < 9.8320] w=0.4063 to align # Constraint # added constraint: constraint((T0361)K79.CB, (T0361)I88.CB) [> 4.2673 = 7.1122 < 9.2458] w=0.3981 to align # Constraint # added constraint: constraint((T0361)L41.CB, (T0361)A70.CB) [> 4.3982 = 7.3304 < 9.5295] w=0.3902 to align # Constraint # added constraint: constraint((T0361)I74.CB, (T0361)I88.CB) [> 3.6806 = 6.1344 < 7.9747] w=0.3902 to align # Constraint # added constraint: constraint((T0361)L71.CB, (T0361)L84.CB) [> 3.0851 = 5.1419 < 6.6845] w=0.3873 to align # Constraint # added constraint: constraint((T0361)L30.CB, (T0361)Y94.CB) [> 3.2741 = 5.4569 < 7.0940] w=0.3817 to align # Constraint # added constraint: constraint((T0361)L57.CB, (T0361)V69.CB) [> 3.4617 = 5.7695 < 7.5004] w=0.3808 to align # Constraint # added constraint: constraint((T0361)I34.CB, (T0361)P56.CB) [> 3.9977 = 6.6629 < 8.6617] w=0.3768 to align # Constraint # added constraint: constraint((T0361)S28.CB, (T0361)R72.CB) [> 4.2667 = 7.1112 < 9.2445] w=0.3725 to align # Constraint # added constraint: constraint((T0361)A126.CB, (T0361)M135.CB) [> 4.4952 = 7.4920 < 9.7396] w=0.3678 to align # Constraint # added constraint: constraint((T0361)D46.CB, (T0361)Y85.CB) [> 3.2949 = 5.4916 < 7.1390] w=0.3638 to align # Constraint # added constraint: constraint((T0361)I34.CB, (T0361)L73.CB) [> 3.9034 = 6.5057 < 8.4575] w=0.3622 to align # Constraint # added constraint: constraint((T0361)I29.CB, (T0361)L41.CB) [> 3.9724 = 6.6207 < 8.6069] w=0.3614 to align # Constraint # added constraint: constraint((T0361)F22.CB, (T0361)L57.CB) [> 4.1266 = 6.8777 < 8.9410] w=0.3614 to align # Constraint # added constraint: constraint((T0361)Y52.CB, (T0361)V69.CB) [> 3.4677 = 5.7796 < 7.5134] w=0.3600 to align # Constraint # added constraint: constraint((T0361)Y52.CB, (T0361)R72.CB) [> 4.5397 = 7.5662 < 9.8360] w=0.3600 to align # Constraint # added constraint: constraint((T0361)Y75.CB, (T0361)L84.CB) [> 3.4513 = 5.7522 < 7.4778] w=0.3569 to align # Constraint # added constraint: constraint((T0361)L38.CB, (T0361)A70.CB) [> 3.4663 = 5.7771 < 7.5102] w=0.3562 to align # Constraint # added constraint: constraint((T0361)I34.CB, (T0361)L71.CB) [> 3.2679 = 5.4465 < 7.0804] w=0.3562 to align # Constraint # added constraint: constraint((T0361)W113.CB, (T0361)L156.CB) [> 3.0738 = 5.1230 < 6.6599] w=0.3555 to align # Constraint # added constraint: constraint((T0361)A108.CB, (T0361)F137.CB) [> 3.5075 = 5.8459 < 7.5997] w=0.3536 to align # Constraint # added constraint: constraint((T0361)L128.CB, (T0361)F140.CB) [> 3.8165 = 6.3609 < 8.2691] w=0.3526 to align # Constraint # added constraint: constraint((T0361)H27.CB, (T0361)L73.CB) [> 4.4416 = 7.4026 < 9.6235] w=0.3480 to align # Constraint # added constraint: constraint((T0361)A26.CB, (T0361)L73.CB) [> 4.0935 = 6.8224 < 8.8692] w=0.3480 to align # Constraint # added constraint: constraint((T0361)M23.CB, (T0361)A76.CB) [> 3.4850 = 5.8083 < 7.5508] w=0.3480 to align # Constraint # added constraint: constraint((T0361)A70.CB, (T0361)T112.CB) [> 3.9350 = 6.5583 < 8.5258] w=0.3478 to align # Constraint # added constraint: constraint((T0361)Y85.CB, (T0361)V119.CB) [> 3.1536 = 5.2560 < 6.8328] w=0.3464 to align # Constraint # added constraint: constraint((T0361)L98.CB, (T0361)I111.CB) [> 4.1006 = 6.8343 < 8.8846] w=0.3437 to align # Constraint # added constraint: constraint((T0361)A70.CB, (T0361)I111.CB) [> 3.2727 = 5.4545 < 7.0909] w=0.3436 to align # Constraint # added constraint: constraint((T0361)L30.CB, (T0361)V50.CB) [> 3.5045 = 5.8408 < 7.5931] w=0.3430 to align # Constraint # added constraint: constraint((T0361)D139.CB, (T0361)F148.CB) [> 3.5204 = 5.8673 < 7.6275] w=0.3417 to align # Constraint # added constraint: constraint((T0361)L71.CB, (T0361)I116.CB) [> 3.9799 = 6.6332 < 8.6231] w=0.3412 to align # Constraint # added constraint: constraint((T0361)S121.CB, (T0361)S144.CB) [> 3.2461 = 5.4102 < 7.0332] w=0.3376 to align # Constraint # added constraint: constraint((T0361)L30.CB, (T0361)M151.CB) [> 3.3185 = 5.5308 < 7.1901] w=0.3356 to align # Constraint # added constraint: constraint((T0361)L41.CB, (T0361)K79.CB) [> 3.6829 = 6.1381 < 7.9795] w=0.3318 to align # Constraint # added constraint: constraint((T0361)R72.CB, (T0361)F115.CB) [> 4.0311 = 6.7185 < 8.7340] w=0.3297 to align # Constraint # added constraint: constraint((T0361)I34.CB, (T0361)V54.CB) [> 3.8837 = 6.4729 < 8.4147] w=0.3260 to align # Constraint # added constraint: constraint((T0361)L30.CB, (T0361)A53.CB) [> 4.1382 = 6.8970 < 8.9660] w=0.3210 to align # Constraint # added constraint: constraint((T0361)E11.CB, (T0361)F20.CB) [> 3.5950 = 5.9917 < 7.7893] w=0.3204 to align # Constraint # added constraint: constraint((T0361)L10.CB, (T0361)F20.CB) [> 3.0701 = 5.1168 < 6.6518] w=0.3204 to align # Constraint # added constraint: constraint((T0361)S149.CB, (T0361)V160.CB) [> 3.8411 = 6.4018 < 8.3223] w=0.3190 to align # Constraint # added constraint: constraint((T0361)L10.CB, (T0361)M23.CB) [> 3.2653 = 5.4421 < 7.0747] w=0.3186 to align # Constraint # added constraint: constraint((T0361)E145.CB, (T0361)T154.CB) [> 3.9892 = 6.6486 < 8.6432] w=0.3175 to align # Constraint # added constraint: constraint((T0361)F37.CB, (T0361)D46.CB) [> 3.5724 = 5.9541 < 7.7403] w=0.3173 to align # Constraint # added constraint: constraint((T0361)Q12.CB, (T0361)F22.CB) [> 3.2500 = 5.4167 < 7.0417] w=0.3167 to align # Constraint # added constraint: constraint((T0361)S121.CB, (T0361)R147.CB) [> 4.1757 = 6.9595 < 9.0473] w=0.3132 to align # Constraint # added constraint: constraint((T0361)F140.CB, (T0361)L167.CB) [> 4.1911 = 6.9851 < 9.0806] w=0.3127 to align # Constraint # added constraint: constraint((T0361)L31.CB, (T0361)P56.CB) [> 4.5057 = 7.5095 < 9.7623] w=0.3101 to align # Constraint # added constraint: constraint((T0361)L38.CB, (T0361)P56.CB) [> 4.0358 = 6.7263 < 8.7442] w=0.3037 to align # Constraint # added constraint: constraint((T0361)Y97.CB, (T0361)F107.CB) [> 4.1022 = 6.8371 < 8.8882] w=0.3030 to align # Constraint # added constraint: constraint((T0361)I67.CB, (T0361)A108.CB) [> 4.2371 = 7.0618 < 9.1804] w=0.3003 to align # Constraint # added constraint: constraint((T0361)I49.CB, (T0361)Y97.CB) [> 3.8886 = 6.4810 < 8.4253] w=0.2986 to align # Constraint # added constraint: constraint((T0361)I49.CB, (T0361)L98.CB) [> 4.0404 = 6.7340 < 8.7542] w=0.2986 to align # Constraint # added constraint: constraint((T0361)F91.CB, (T0361)A159.CB) [> 4.6967 = 7.8279 < 10.1762] w=0.2958 to align # Constraint # added constraint: constraint((T0361)Q16.CB, (T0361)L64.CB) [> 4.1547 = 6.9245 < 9.0018] w=0.2958 to align # Constraint # added constraint: constraint((T0361)L19.CB, (T0361)D68.CB) [> 2.6164 = 4.3607 < 5.6689] w=0.2958 to align # Constraint # added constraint: constraint((T0361)L19.CB, (T0361)V69.CB) [> 2.6567 = 4.4278 < 5.7561] w=0.2958 to align # Constraint # added constraint: constraint((T0361)L19.CB, (T0361)R72.CB) [> 3.4348 = 5.7247 < 7.4421] w=0.2958 to align # Constraint # added constraint: constraint((T0361)M23.CB, (T0361)R72.CB) [> 2.8445 = 4.7408 < 6.1631] w=0.2958 to align # Constraint # added constraint: constraint((T0361)A26.CB, (T0361)V54.CB) [> 3.9145 = 6.5242 < 8.4815] w=0.2958 to align # Constraint # added constraint: constraint((T0361)H27.CB, (T0361)A76.CB) [> 3.5643 = 5.9405 < 7.7227] w=0.2958 to align # Constraint # added constraint: constraint((T0361)I29.CB, (T0361)V50.CB) [> 3.4761 = 5.7935 < 7.5315] w=0.2958 to align # Constraint # added constraint: constraint((T0361)L30.CB, (T0361)A76.CB) [> 4.1748 = 6.9581 < 9.0455] w=0.2936 to align # Constraint # added constraint: constraint((T0361)F37.CB, (T0361)I74.CB) [> 4.1535 = 6.9225 < 8.9992] w=0.2936 to align # Constraint # added constraint: constraint((T0361)A59.CB, (T0361)A70.CB) [> 4.3450 = 7.2417 < 9.4142] w=0.2936 to align # Constraint # added constraint: constraint((T0361)V69.CB, (T0361)I116.CB) [> 4.0103 = 6.6838 < 8.6889] w=0.2936 to align # Constraint # added constraint: constraint((T0361)Y75.CB, (T0361)K153.CB) [> 4.4550 = 7.4250 < 9.6525] w=0.2936 to align # Constraint # added constraint: constraint((T0361)D87.CB, (T0361)L164.CB) [> 3.5021 = 5.8368 < 7.5879] w=0.2936 to align # Constraint # added constraint: constraint((T0361)F91.CB, (T0361)L164.CB) [> 4.4319 = 7.3864 < 9.6024] w=0.2936 to align # Constraint # added constraint: constraint((T0361)Y94.CB, (T0361)V152.CB) [> 4.7891 = 7.9819 < 10.3764] w=0.2899 to align # Constraint # added constraint: constraint((T0361)Y94.CB, (T0361)N118.CB) [> 4.6277 = 7.7129 < 10.0267] w=0.2899 to align # Constraint # added constraint: constraint((T0361)S92.CB, (T0361)L156.CB) [> 3.6848 = 6.1413 < 7.9837] w=0.2899 to align # Constraint # added constraint: constraint((T0361)T127.CB, (T0361)W143.CB) [> 4.1925 = 6.9876 < 9.0838] w=0.2899 to align # Constraint # added constraint: constraint((T0361)S121.CB, (T0361)F140.CB) [> 4.4988 = 7.4981 < 9.7475] w=0.2899 to align # Constraint # added constraint: constraint((T0361)F107.CB, (T0361)F137.CB) [> 4.7812 = 7.9686 < 10.3592] w=0.2899 to align # Constraint # added constraint: constraint((T0361)F107.CB, (T0361)M135.CB) [> 4.5517 = 7.5862 < 9.8621] w=0.2899 to align # Constraint # added constraint: constraint((T0361)R35.CB, (T0361)Y94.CB) [> 3.0034 = 5.0056 < 6.5073] w=0.2882 to align # Constraint # added constraint: constraint((T0361)P39.CB, (T0361)V50.CB) [> 4.0799 = 6.7997 < 8.8397] w=0.2840 to align # Constraint # added constraint: constraint((T0361)I34.CB, (T0361)R147.CB) [> 3.5541 = 5.9235 < 7.7005] w=0.2832 to align # Constraint # added constraint: constraint((T0361)I34.CB, (T0361)I116.CB) [> 4.7878 = 7.9797 < 10.3736] w=0.2832 to align # Constraint # added constraint: constraint((T0361)I34.CB, (T0361)L98.CB) [> 4.5726 = 7.6211 < 9.9074] w=0.2832 to align # Constraint # added constraint: constraint((T0361)G33.CA, (T0361)L98.CB) [> 4.2210 = 7.0351 < 9.1456] w=0.2832 to align # Constraint # added constraint: constraint((T0361)T25.CB, (T0361)L73.CB) [> 3.4650 = 5.7750 < 7.5076] w=0.2832 to align # Constraint # added constraint: constraint((T0361)T25.CB, (T0361)V69.CB) [> 4.2087 = 7.0144 < 9.1188] w=0.2832 to align # Constraint # added constraint: constraint((T0361)F22.CB, (T0361)Q60.CB) [> 4.5634 = 7.6056 < 9.8872] w=0.2832 to align # Constraint # added constraint: constraint((T0361)I122.CB, (T0361)D139.CB) [> 3.8132 = 6.3553 < 8.2619] w=0.2832 to align # Constraint # added constraint: constraint((T0361)L41.CB, (T0361)T123.CB) [> 2.5798 = 4.2997 < 5.5896] w=0.2832 to align # Constraint # added constraint: constraint((T0361)F91.CB, (T0361)L156.CB) [> 3.9943 = 6.6572 < 8.6543] w=0.2796 to align # Constraint # added constraint: constraint((T0361)I34.CB, (T0361)M80.CB) [> 4.1357 = 6.8929 < 8.9607] w=0.2715 to align # Constraint # added constraint: constraint((T0361)D66.CB, (T0361)A108.CB) [> 3.4707 = 5.7845 < 7.5199] w=0.2695 to align # Constraint # added constraint: constraint((T0361)I116.CB, (T0361)L128.CB) [> 3.9269 = 6.5449 < 8.5084] w=0.2669 to align # Constraint # added constraint: constraint((T0361)I34.CB, (T0361)E48.CB) [> 4.2720 = 7.1199 < 9.2559] w=0.2647 to align # Constraint # added constraint: constraint((T0361)V54.CB, (T0361)L98.CB) [> 3.7092 = 6.1821 < 8.0367] w=0.2641 to align # Constraint # added constraint: constraint((T0361)M135.CB, (T0361)R147.CB) [> 3.6162 = 6.0270 < 7.8351] w=0.2639 to align # Constraint # added constraint: constraint((T0361)I34.CB, (T0361)N45.CB) [> 3.4962 = 5.8270 < 7.5752] w=0.2637 to align # Constraint # added constraint: constraint((T0361)F42.CB, (T0361)Y94.CB) [> 3.5826 = 5.9710 < 7.7623] w=0.2588 to align # Constraint # added constraint: constraint((T0361)G33.CA, (T0361)Y52.CB) [> 4.4206 = 7.3677 < 9.5779] w=0.2559 to align # Constraint # added constraint: constraint((T0361)G33.CA, (T0361)P56.CB) [> 2.9639 = 4.9398 < 6.4217] w=0.2559 to align # Constraint # added constraint: constraint((T0361)L71.CB, (T0361)F91.CB) [> 3.7909 = 6.3182 < 8.2136] w=0.2559 to align # Constraint # added constraint: constraint((T0361)Y129.CB, (T0361)F140.CB) [> 4.1436 = 6.9060 < 8.9778] w=0.2553 to align # Constraint # added constraint: constraint((T0361)I49.CB, (T0361)Y94.CB) [> 3.7249 = 6.2081 < 8.0706] w=0.2538 to align # Constraint # added constraint: constraint((T0361)L41.CB, (T0361)Y94.CB) [> 3.7936 = 6.3226 < 8.2194] w=0.2495 to align # Constraint # added constraint: constraint((T0361)N125.CB, (T0361)G150.CA) [> 3.9415 = 6.5692 < 8.5400] w=0.2483 to align # Constraint # added constraint: constraint((T0361)A141.CB, (T0361)L167.CB) [> 3.3183 = 5.5305 < 7.1896] w=0.2480 to align # Constraint # added constraint: constraint((T0361)A141.CB, (T0361)T163.CB) [> 3.6525 = 6.0875 < 7.9138] w=0.2480 to align # Constraint # added constraint: constraint((T0361)H90.CB, (T0361)A159.CB) [> 4.1130 = 6.8551 < 8.9116] w=0.2456 to align # Constraint # added constraint: constraint((T0361)L77.CB, (T0361)A108.CB) [> 4.4275 = 7.3791 < 9.5928] w=0.2454 to align # Constraint # added constraint: constraint((T0361)N120.CB, (T0361)A159.CB) [> 3.5435 = 5.9058 < 7.6775] w=0.2433 to align # Constraint # added constraint: constraint((T0361)D66.CB, (T0361)A131.CB) [> 4.2779 = 7.1298 < 9.2687] w=0.2393 to align # Constraint # added constraint: constraint((T0361)Y94.CB, (T0361)A159.CB) [> 3.6791 = 6.1318 < 7.9713] w=0.2353 to align # Constraint # added constraint: constraint((T0361)L31.CB, (T0361)V69.CB) [> 3.8984 = 6.4974 < 8.4466] w=0.2302 to align # Constraint # added constraint: constraint((T0361)D66.CB, (T0361)P105.CB) [> 2.9918 = 4.9863 < 6.4822] w=0.2280 to align # Constraint # added constraint: constraint((T0361)I74.CB, (T0361)I111.CB) [> 3.8793 = 6.4655 < 8.4051] w=0.2213 to align # Constraint # added constraint: constraint((T0361)D66.CB, (T0361)I111.CB) [> 3.9973 = 6.6622 < 8.6608] w=0.2188 to align # Constraint # added constraint: constraint((T0361)Q36.CB, (T0361)N45.CB) [> 4.5486 = 7.5810 < 9.8554] w=0.2170 to align # Constraint # added constraint: constraint((T0361)L13.CB, (T0361)I34.CB) [> 3.6281 = 6.0469 < 7.8610] w=0.2115 to align # Constraint # added constraint: constraint((T0361)I116.CB, (T0361)A155.CB) [> 4.5147 = 7.5244 < 9.7818] w=0.2063 to align # Constraint # added constraint: constraint((T0361)R147.CB, (T0361)A159.CB) [> 3.5386 = 5.8977 < 7.6670] w=0.2034 to align # Constraint # added constraint: constraint((T0361)H27.CB, (T0361)I67.CB) [> 3.9317 = 6.5528 < 8.5186] w=0.1979 to align # Constraint # added constraint: constraint((T0361)G78.CA, (T0361)Y129.CB) [> 4.4420 = 7.4034 < 9.6244] w=0.1972 to align # Constraint # added constraint: constraint((T0361)N118.CB, (T0361)Y129.CB) [> 3.7055 = 6.1758 < 8.0285] w=0.1972 to align # Constraint # added constraint: constraint((T0361)M80.CB, (T0361)L98.CB) [> 4.7419 = 7.9032 < 10.2741] w=0.1970 to align # Constraint # added constraint: constraint((T0361)A138.CB, (T0361)R147.CB) [> 2.5185 = 4.1975 < 5.4567] w=0.1970 to align # Constraint # added constraint: constraint((T0361)F137.CB, (T0361)R147.CB) [> 4.6602 = 7.7670 < 10.0971] w=0.1970 to align # Constraint # added constraint: constraint((T0361)A131.CB, (T0361)A155.CB) [> 3.8781 = 6.4634 < 8.4024] w=0.1970 to align # Constraint # added constraint: constraint((T0361)V43.CB, (T0361)K133.CB) [> 4.6201 = 7.7001 < 10.0101] w=0.1933 to align # Constraint # added constraint: constraint((T0361)F42.CB, (T0361)F107.CB) [> 4.7032 = 7.8387 < 10.1903] w=0.1933 to align # Constraint # added constraint: constraint((T0361)D44.CB, (T0361)Y129.CB) [> 2.9423 = 4.9039 < 6.3751] w=0.1933 to align # Constraint # added constraint: constraint((T0361)Y94.CB, (T0361)M151.CB) [> 4.1220 = 6.8700 < 8.9310] w=0.1888 to align # Constraint # added constraint: constraint((T0361)L98.CB, (T0361)M151.CB) [> 4.5127 = 7.5211 < 9.7774] w=0.1888 to align # Constraint # added constraint: constraint((T0361)L98.CB, (T0361)R147.CB) [> 4.2873 = 7.1455 < 9.2891] w=0.1879 to align # Constraint # added constraint: constraint((T0361)Y94.CB, (T0361)L167.CB) [> 3.3763 = 5.6271 < 7.3152] w=0.1840 to align # Constraint # added constraint: constraint((T0361)I67.CB, (T0361)I111.CB) [> 2.6612 = 4.4353 < 5.7659] w=0.1831 to align # Constraint # added constraint: constraint((T0361)F148.CB, (T0361)T161.CB) [> 3.6335 = 6.0558 < 7.8726] w=0.1829 to align # Constraint # added constraint: constraint((T0361)G62.CA, (T0361)L71.CB) [> 3.9950 = 6.6584 < 8.6559] w=0.1817 to align # Constraint # added constraint: constraint((T0361)W113.CB, (T0361)K153.CB) [> 4.4761 = 7.4601 < 9.6981] w=0.1800 to align # Constraint # added constraint: constraint((T0361)H27.CB, (T0361)Y52.CB) [> 4.5586 = 7.5976 < 9.8769] w=0.1788 to align # Constraint # added constraint: constraint((T0361)W113.CB, (T0361)A155.CB) [> 3.4697 = 5.7828 < 7.5177] w=0.1755 to align # Constraint # added constraint: constraint((T0361)V54.CB, (T0361)F91.CB) [> 4.5998 = 7.6663 < 9.9662] w=0.1636 to align # Constraint # added constraint: constraint((T0361)I67.CB, (T0361)F91.CB) [> 3.3471 = 5.5785 < 7.2521] w=0.1636 to align # Constraint # added constraint: constraint((T0361)Y75.CB, (T0361)Y85.CB) [> 3.4762 = 5.7937 < 7.5319] w=0.1636 to align # Constraint # added constraint: constraint((T0361)V9.CB, (T0361)M151.CB) [> 4.1146 = 6.8576 < 8.9149] w=0.1630 to align # Constraint # added constraint: constraint((T0361)M23.CB, (T0361)L77.CB) [> 3.7133 = 6.1889 < 8.0455] w=0.1608 to align # Constraint # added constraint: constraint((T0361)I34.CB, (T0361)Y94.CB) [> 3.2344 = 5.3907 < 7.0079] w=0.1569 to align # Constraint # added constraint: constraint((T0361)L13.CB, (T0361)T25.CB) [> 3.6639 = 6.1065 < 7.9384] w=0.1569 to align # Constraint # added constraint: constraint((T0361)N118.CB, (T0361)E166.CB) [> 3.8969 = 6.4948 < 8.4433] w=0.1569 to align # Constraint # added constraint: constraint((T0361)I67.CB, (T0361)D114.CB) [> 4.5377 = 7.5629 < 9.8318] w=0.1523 to align # Constraint # added constraint: constraint((T0361)V142.CB, (T0361)L167.CB) [> 3.8688 = 6.4480 < 8.3824] w=0.1523 to align # Constraint # added constraint: constraint((T0361)Y75.CB, (T0361)F91.CB) [> 4.4399 = 7.3999 < 9.6198] w=0.1489 to align # Constraint # added constraint: constraint((T0361)I122.CB, (T0361)M151.CB) [> 4.3819 = 7.3032 < 9.4941] w=0.1480 to align # Constraint # added constraint: constraint((T0361)L13.CB, (T0361)Y75.CB) [> 4.7180 = 7.8634 < 10.2224] w=0.1468 to align # Constraint # added constraint: constraint((T0361)V9.CB, (T0361)R147.CB) [> 4.1573 = 6.9289 < 9.0075] w=0.1468 to align # Constraint # added constraint: constraint((T0361)V9.CB, (T0361)I122.CB) [> 4.4082 = 7.3470 < 9.5511] w=0.1468 to align # Constraint # added constraint: constraint((T0361)V9.CB, (T0361)V119.CB) [> 3.7168 = 6.1946 < 8.0530] w=0.1468 to align # Constraint # added constraint: constraint((T0361)E6.CB, (T0361)R147.CB) [> 4.7193 = 7.8656 < 10.2252] w=0.1468 to align # Constraint # added constraint: constraint((T0361)E6.CB, (T0361)I122.CB) [> 4.6097 = 7.6829 < 9.9878] w=0.1468 to align # Constraint # added constraint: constraint((T0361)T5.CB, (T0361)R147.CB) [> 3.2592 = 5.4320 < 7.0616] w=0.1468 to align # Constraint # added constraint: constraint((T0361)T3.CB, (T0361)L132.CB) [> 3.7009 = 6.1682 < 8.0187] w=0.1468 to align # Constraint # added constraint: constraint((T0361)A15.CB, (T0361)I34.CB) [> 3.1336 = 5.2226 < 6.7894] w=0.1468 to align # Constraint # added constraint: constraint((T0361)D14.CB, (T0361)I34.CB) [> 4.4872 = 7.4787 < 9.7223] w=0.1468 to align # Constraint # added constraint: constraint((T0361)M80.CB, (T0361)T161.CB) [> 4.6648 = 7.7747 < 10.1071] w=0.1468 to align # Constraint # added constraint: constraint((T0361)S121.CB, (T0361)L156.CB) [> 4.2913 = 7.1522 < 9.2978] w=0.1468 to align # Constraint # added constraint: constraint((T0361)S121.CB, (T0361)K153.CB) [> 3.6926 = 6.1544 < 8.0007] w=0.1468 to align # Constraint # added constraint: constraint((T0361)Y75.CB, (T0361)T157.CB) [> 4.3743 = 7.2905 < 9.4776] w=0.1468 to align # Constraint # added constraint: constraint((T0361)R72.CB, (T0361)V152.CB) [> 3.8204 = 6.3673 < 8.2775] w=0.1468 to align # Constraint # added constraint: constraint((T0361)G78.CA, (T0361)S121.CB) [> 3.3741 = 5.6236 < 7.3106] w=0.1447 to align # Constraint # added constraint: constraint((T0361)E145.CB, (T0361)T157.CB) [> 3.7077 = 6.1796 < 8.0334] w=0.1348 to align # Constraint # added constraint: constraint((T0361)A131.CB, (T0361)T154.CB) [> 3.2009 = 5.3348 < 6.9353] w=0.1313 to align # Constraint # added constraint: constraint((T0361)Y94.CB, (T0361)P105.CB) [> 4.7853 = 7.9756 < 10.3682] w=0.1294 to align # Constraint # added constraint: constraint((T0361)I116.CB, (T0361)L167.CB) [> 4.4648 = 7.4413 < 9.6737] w=0.1246 to align # Constraint # added constraint: constraint((T0361)V43.CB, (T0361)L77.CB) [> 3.0736 = 5.1227 < 6.6596] w=0.1168 to align # Constraint # added constraint: constraint((T0361)N45.CB, (T0361)D68.CB) [> 3.1839 = 5.3064 < 6.8983] w=0.1148 to align # Constraint # added constraint: constraint((T0361)Y52.CB, (T0361)D65.CB) [> 4.5753 = 7.6255 < 9.9132] w=0.1148 to align # Constraint # added constraint: constraint((T0361)G106.CA, (T0361)A155.CB) [> 4.5784 = 7.6307 < 9.9198] w=0.1106 to align # Constraint # added constraint: constraint((T0361)G33.CA, (T0361)F91.CB) [> 3.7516 = 6.2527 < 8.1285] w=0.1085 to align # Constraint # added constraint: constraint((T0361)T123.CB, (T0361)L158.CB) [> 4.3271 = 7.2119 < 9.3755] w=0.1077 to align # Constraint # added constraint: constraint((T0361)S121.CB, (T0361)L158.CB) [> 4.4656 = 7.4427 < 9.6756] w=0.1077 to align # Constraint # added constraint: constraint((T0361)S121.CB, (T0361)A155.CB) [> 3.6960 = 6.1601 < 8.0081] w=0.1077 to align # Constraint # added constraint: constraint((T0361)A138.CB, (T0361)T157.CB) [> 4.6896 = 7.8160 < 10.1608] w=0.1077 to align # Constraint # added constraint: constraint((T0361)L132.CB, (T0361)V142.CB) [> 2.7373 = 4.5622 < 5.9309] w=0.1077 to align # Constraint # added constraint: constraint((T0361)T127.CB, (T0361)A155.CB) [> 4.3135 = 7.1891 < 9.3459] w=0.1077 to align # Constraint # added constraint: constraint((T0361)T127.CB, (T0361)T154.CB) [> 2.7266 = 4.5443 < 5.9076] w=0.1077 to align # Constraint # added constraint: constraint((T0361)T127.CB, (T0361)V152.CB) [> 3.2294 = 5.3823 < 6.9970] w=0.1077 to align # Constraint # added constraint: constraint((T0361)N125.CB, (T0361)L158.CB) [> 3.9059 = 6.5098 < 8.4628] w=0.1077 to align # Constraint # added constraint: constraint((T0361)N125.CB, (T0361)A138.CB) [> 4.0630 = 6.7716 < 8.8031] w=0.1031 to align # Constraint # added constraint: constraint((T0361)D110.CB, (T0361)D139.CB) [> 3.6978 = 6.1631 < 8.0120] w=0.1015 to align # Constraint # added constraint: constraint((T0361)A141.CB, (T0361)T161.CB) [> 4.7724 = 7.9540 < 10.3402] w=0.0986 to align # Constraint # added constraint: constraint((T0361)Y75.CB, (T0361)P105.CB) [> 3.4261 = 5.7101 < 7.4232] w=0.0986 to align # Constraint # added constraint: constraint((T0361)E48.CB, (T0361)F91.CB) [> 3.5198 = 5.8663 < 7.6262] w=0.0957 to align # Constraint # added constraint: constraint((T0361)L64.CB, (T0361)M80.CB) [> 2.9984 = 4.9973 < 6.4965] w=0.0957 to align # Constraint # added constraint: constraint((T0361)V9.CB, (T0361)L19.CB) [> 3.4989 = 5.8314 < 7.5809] w=0.0947 to align # Constraint # added constraint: constraint((T0361)V9.CB, (T0361)F20.CB) [> 3.8724 = 6.4541 < 8.3903] w=0.0785 to align # Constraint # added constraint: constraint((T0361)I67.CB, (T0361)F115.CB) [> 2.9653 = 4.9421 < 6.4247] w=0.0782 to align # Constraint # added constraint: constraint((T0361)P63.CB, (T0361)I116.CB) [> 4.6443 = 7.7405 < 10.0626] w=0.0766 to align # Constraint # added constraint: constraint((T0361)V152.CB, (T0361)T163.CB) [> 3.2313 = 5.3855 < 7.0011] w=0.0723 to align # Constraint # added constraint: constraint((T0361)D110.CB, (T0361)L158.CB) [> 4.3389 = 7.2316 < 9.4010] w=0.0723 to align # Constraint # added constraint: constraint((T0361)I116.CB, (T0361)D139.CB) [> 4.2915 = 7.1524 < 9.2982] w=0.0723 to align # Constraint # added constraint: constraint((T0361)Y94.CB, (T0361)T162.CB) [> 4.4804 = 7.4673 < 9.7075] w=0.0723 to align # Constraint # added constraint: constraint((T0361)E47.CB, (T0361)I67.CB) [> 4.1392 = 6.8987 < 8.9684] w=0.0670 to align # Constraint # added constraint: constraint((T0361)S21.CB, (T0361)L98.CB) [> 4.5443 = 7.5738 < 9.8460] w=0.0657 to align # Constraint # added constraint: constraint((T0361)F91.CB, (T0361)P105.CB) [> 4.6274 = 7.7123 < 10.0260] w=0.0647 to align # Constraint # added constraint: constraint((T0361)I34.CB, (T0361)I67.CB) [> 4.3381 = 7.2301 < 9.3992] w=0.0626 to align # Constraint # added constraint: constraint((T0361)K55.CB, (T0361)D68.CB) [> 3.9794 = 6.6323 < 8.6220] w=0.0626 to align # Constraint # added constraint: constraint((T0361)F42.CB, (T0361)L98.CB) [> 4.7387 = 7.8978 < 10.2672] w=0.0616 to align # Constraint # added constraint: constraint((T0361)F42.CB, (T0361)E51.CB) [> 3.5010 = 5.8351 < 7.5856] w=0.0523 to align # Constraint # added constraint: constraint((T0361)V142.CB, (T0361)T162.CB) [> 3.8344 = 6.3907 < 8.3079] w=0.0523 to align # Constraint # added constraint: constraint((T0361)A138.CB, (T0361)T154.CB) [> 3.1049 = 5.1748 < 6.7272] w=0.0523 to align # Constraint # added constraint: constraint((T0361)P63.CB, (T0361)F137.CB) [> 3.8747 = 6.4578 < 8.3951] w=0.0523 to align # Constraint # added constraint: constraint((T0361)L71.CB, (T0361)L128.CB) [> 4.0176 = 6.6960 < 8.7048] w=0.0523 to align # Constraint # added constraint: constraint((T0361)I67.CB, (T0361)D130.CB) [> 4.6244 = 7.7073 < 10.0196] w=0.0523 to align # Constraint # added constraint: constraint((T0361)I67.CB, (T0361)L128.CB) [> 3.4172 = 5.6953 < 7.4039] w=0.0523 to align # Constraint # added constraint: constraint((T0361)I67.CB, (T0361)T127.CB) [> 3.2164 = 5.3606 < 6.9688] w=0.0523 to align # Constraint # added constraint: constraint((T0361)V43.CB, (T0361)A76.CB) [> 4.0634 = 6.7723 < 8.8039] w=0.0508 to align # Constraint # added constraint: constraint((T0361)L10.CB, (T0361)L98.CB) [> 3.8439 = 6.4064 < 8.3284] w=0.0486 to align # Constraint # added constraint: constraint((T0361)L64.CB, (T0361)V152.CB) [> 4.2680 = 7.1133 < 9.2473] w=0.0383 to align # Constraint # added constraint: constraint((T0361)L71.CB, (T0361)V152.CB) [> 4.7978 = 7.9964 < 10.3953] w=0.0383 to align # Constraint # added constraint: constraint((T0361)R147.CB, (T0361)L158.CB) [> 3.7260 = 6.2100 < 8.0730] w=0.0383 to align # Constraint # added constraint: constraint((T0361)Y129.CB, (T0361)T161.CB) [> 3.4737 = 5.7895 < 7.5264] w=0.0372 to align # Constraint # added constraint: constraint((T0361)K55.CB, (T0361)T154.CB) [> 4.0796 = 6.7994 < 8.8392] w=0.0362 to align # Constraint # added constraint: constraint((T0361)D7.CB, (T0361)L167.CB) [> 4.7598 = 7.9330 < 10.3129] w=0.0362 to align # Constraint # added constraint: constraint((T0361)V9.CB, (T0361)N18.CB) [> 4.7976 = 7.9959 < 10.3947] w=0.0362 to align # Constraint # added constraint: constraint((T0361)I116.CB, (T0361)A138.CB) [> 3.2709 = 5.4514 < 7.0869] w=0.0362 to align # Constraint # added constraint: constraint((T0361)I116.CB, (T0361)V142.CB) [> 4.2175 = 7.0292 < 9.1379] w=0.0362 to align # Constraint # added constraint: constraint((T0361)I67.CB, (T0361)I116.CB) [> 3.7997 = 6.3328 < 8.2327] w=0.0318 to align # Constraint # added constraint: constraint((T0361)I116.CB, (T0361)M151.CB) [> 3.5997 = 5.9995 < 7.7993] w=0.0308 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0361/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0361/decoys/ # ReadConformPDB reading from PDB file ROBETTA_deNovo1.repack.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file ROBETTA_deNovo10.repack.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file ROBETTA_deNovo2.repack.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 136 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ROBETTA_deNovo3.repack.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ROBETTA_deNovo4.repack.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file ROBETTA_deNovo5.repack.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file ROBETTA_deNovo6.repack.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file ROBETTA_deNovo7.repack.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file ROBETTA_deNovo8.repack.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file ROBETTA_deNovo9.repack.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file ROBETTA_parent1.repack.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ROBETTA_parent2.repack.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ROBETTA_parent3.repack.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ROBETTA_parent4.repack.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ROBETTA_parent5.repack.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 4 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 Skipped atom 223, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 Skipped atom 223, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 14 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 118 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 Skipped atom 51, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 56, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 97, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 167, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 336, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 421, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 478, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 487, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0361)Q12.O and (T0361)L13.N only 0.000 apart, marking (T0361)L13.N as missing WARNING: atoms too close: (T0361)I29.O and (T0361)L30.N only 0.000 apart, marking (T0361)L30.N as missing WARNING: atoms too close: (T0361)D102.O and (T0361)E103.N only 0.000 apart, marking (T0361)E103.N as missing # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0361)A126.O and (T0361)T127.N only 0.000 apart, marking (T0361)T127.N as missing # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0361)P63.N and (T0361)L64.N only 0.000 apart, marking (T0361)L64.N as missing WARNING: atoms too close: (T0361)P63.CA and (T0361)L64.CA only 0.000 apart, marking (T0361)L64.CA as missing WARNING: atoms too close: (T0361)P63.CB and (T0361)L64.CB only 0.000 apart, marking (T0361)L64.CB as missing WARNING: atoms too close: (T0361)P63.O and (T0361)L64.O only 0.000 apart, marking (T0361)L64.O as missing WARNING: atoms too close: (T0361)P63.C and (T0361)L64.C only 0.000 apart, marking (T0361)L64.C as missing WARNING: atoms too close: (T0361)L64.N and (T0361)D65.N only 0.000 apart, marking (T0361)L64.N as missing WARNING: atoms too close: (T0361)P63.N and (T0361)D65.N only 0.000 apart, marking (T0361)D65.N as missing WARNING: atoms too close: (T0361)L64.CA and (T0361)D65.CA only 0.000 apart, marking (T0361)D65.CA as missing WARNING: atoms too close: (T0361)P63.CA and (T0361)D65.CA only 0.000 apart, marking (T0361)D65.CA as missing WARNING: atoms too close: (T0361)L64.CB and (T0361)D65.CB only 0.000 apart, marking (T0361)D65.CB as missing WARNING: atoms too close: (T0361)P63.CB and (T0361)D65.CB only 0.000 apart, marking (T0361)D65.CB as missing WARNING: atoms too close: (T0361)L64.O and (T0361)D65.O only 0.000 apart, marking (T0361)D65.O as missing WARNING: atoms too close: (T0361)P63.O and (T0361)D65.O only 0.000 apart, marking (T0361)D65.O as missing WARNING: atoms too close: (T0361)L64.C and (T0361)D65.C only 0.000 apart, marking (T0361)D65.C as missing WARNING: atoms too close: (T0361)P63.C and (T0361)D65.C only 0.000 apart, marking (T0361)D65.C as missing WARNING: atoms too close: (T0361)D65.N and (T0361)D66.N only 0.000 apart, marking (T0361)D65.N as missing WARNING: atoms too close: (T0361)L64.N and (T0361)D66.N only 0.000 apart, marking (T0361)L64.N as missing WARNING: atoms too close: (T0361)P63.N and (T0361)D66.N only 0.000 apart, marking (T0361)D66.N as missing WARNING: atoms too close: (T0361)D65.CA and (T0361)D66.CA only 0.000 apart, marking (T0361)D66.CA as missing WARNING: atoms too close: (T0361)L64.CA and (T0361)D66.CA only 0.000 apart, marking (T0361)D66.CA as missing WARNING: atoms too close: (T0361)P63.CA and (T0361)D66.CA only 0.000 apart, marking (T0361)D66.CA as missing WARNING: atoms too close: (T0361)D65.CB and (T0361)D66.CB only 0.000 apart, marking (T0361)D66.CB as missing WARNING: atoms too close: (T0361)L64.CB and (T0361)D66.CB only 0.000 apart, marking (T0361)D66.CB as missing WARNING: atoms too close: (T0361)P63.CB and (T0361)D66.CB only 0.000 apart, marking (T0361)D66.CB as missing WARNING: atoms too close: (T0361)D65.O and (T0361)D66.O only 0.000 apart, marking (T0361)D66.O as missing WARNING: atoms too close: (T0361)L64.O and (T0361)D66.O only 0.000 apart, marking (T0361)D66.O as missing WARNING: atoms too close: (T0361)P63.O and (T0361)D66.O only 0.000 apart, marking (T0361)D66.O as missing WARNING: atoms too close: (T0361)D65.C and (T0361)D66.C only 0.000 apart, marking (T0361)D66.C as missing WARNING: atoms too close: (T0361)L64.C and (T0361)D66.C only 0.000 apart, marking (T0361)D66.C as missing WARNING: atoms too close: (T0361)P63.C and (T0361)D66.C only 0.000 apart, marking (T0361)D66.C as missing WARNING: atoms too close: (T0361)D66.N and (T0361)I67.N only 0.000 apart, marking (T0361)D66.N as missing WARNING: atoms too close: (T0361)D65.N and (T0361)I67.N only 0.000 apart, marking (T0361)D65.N as missing WARNING: atoms too close: (T0361)L64.N and (T0361)I67.N only 0.000 apart, marking (T0361)L64.N as missing WARNING: atoms too close: (T0361)P63.N and (T0361)I67.N only 0.000 apart, marking (T0361)I67.N as missing WARNING: atoms too close: (T0361)D66.CA and (T0361)I67.CA only 0.000 apart, marking (T0361)I67.CA as missing WARNING: atoms too close: (T0361)D65.CA and (T0361)I67.CA only 0.000 apart, marking (T0361)I67.CA as missing WARNING: atoms too close: (T0361)L64.CA and (T0361)I67.CA only 0.000 apart, marking (T0361)I67.CA as missing WARNING: atoms too close: (T0361)P63.CA and (T0361)I67.CA only 0.000 apart, marking (T0361)I67.CA as missing WARNING: atoms too close: (T0361)D66.CB and (T0361)I67.CB only 0.000 apart, marking (T0361)I67.CB as missing WARNING: atoms too close: (T0361)D65.CB and (T0361)I67.CB only 0.000 apart, marking (T0361)I67.CB as missing WARNING: atoms too close: (T0361)L64.CB and (T0361)I67.CB only 0.000 apart, marking (T0361)I67.CB as missing WARNING: atoms too close: (T0361)P63.CB and (T0361)I67.CB only 0.000 apart, marking (T0361)I67.CB as missing WARNING: atoms too close: (T0361)D66.O and (T0361)I67.O only 0.000 apart, marking (T0361)I67.O as missing WARNING: atoms too close: (T0361)D65.O and (T0361)I67.O only 0.000 apart, marking (T0361)I67.O as missing WARNING: atoms too close: (T0361)L64.O and (T0361)I67.O only 0.000 apart, marking (T0361)I67.O as missing WARNING: atoms too close: (T0361)P63.O and (T0361)I67.O only 0.000 apart, marking (T0361)I67.O as missing WARNING: atoms too close: (T0361)D66.C and (T0361)I67.C only 0.000 apart, marking (T0361)I67.C as missing WARNING: atoms too close: (T0361)D65.C and (T0361)I67.C only 0.000 apart, marking (T0361)I67.C as missing WARNING: atoms too close: (T0361)L64.C and (T0361)I67.C only 0.000 apart, marking (T0361)I67.C as missing WARNING: atoms too close: (T0361)P63.C and (T0361)I67.C only 0.000 apart, marking (T0361)I67.C as missing # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0361 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 270 model score 1.8949 model score 1.8685 model score 1.7097 model score 1.5580 model score 1.4798 model score 1.5385 model score 1.8146 model score 1.6794 model score 1.7753 model score 1.7976 model score 1.8492 model score 1.9235 model score 1.6561 model score 1.6839 model score 1.6879 model score 1.7819 model score 1.9788 model score 1.8545 model score 2.0034 model score 1.9980 model score 1.8997 model score 1.9890 model score 1.9932 model score 2.0944 model score 2.0787 model score 1.7289 model score 1.9384 model score 1.7201 model score 2.2952 model score 1.9600 model score 1.3656 model score 1.9948 model score 1.3768 model score 2.0532 model score 1.8730 model score 1.3656 model score 1.3768 model score 1.4148 model score 1.4596 model score 1.4523 model score 1.5796 model score 1.3789 model score 1.8802 model score 1.6782 model score 1.9770 model score 1.9118 model score 2.0141 model score 1.5803 model score 2.0241 model score 1.6751 model score 2.2670 model score 1.5790 model score 2.0320 model score 1.5531 model score 2.0041 model score 2.0584 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.0129 model score 1.8357 model score 1.8427 model score 1.8489 model score 1.9104 model score 1.6672 model score 2.0241 model score 2.0141 model score 2.0129 model score 1.8357 model score 2.0850 model score 1.8305 model score 2.0542 model score 2.2128 model score 1.5559 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.1299 model score 1.9483 model score 2.0283 model score 2.1062 model score 2.1274 model score 1.9231 model score 1.6898 model score 2.0179 model score 2.0404 model score 1.2825 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.0646 model score 1.9892 model score 1.8339 model score 2.0042 model score 1.8588 model score 2.2650 model score 1.3847 model score 1.8133 model score 1.6909 model score 1.9145 model score 1.4995 model score 1.6673 model score 2.2405 model score 1.6285 model score 1.7155 model score 1.5100 model score 1.4056 model score 1.5275 model score 1.6713 model score 1.5592 model score 1.7213 model score 1.5904 model score 1.8398 model score 1.2771 model score 1.4504 model score 1.5606 model score 1.4777 model score 1.6825 model score 1.3091 model score 1.3446 model score 1.4448 model score 1.4445 model score 1.5127 model score 1.5060 model score 1.4217 model score 1.3993 model score 1.4397 model score 1.5836 model score 1.5007 model score 1.8902 model score 1.8863 model score 2.0684 model score 1.7651 model score 1.8247 model score 2.1504 model score 2.0638 model score 2.0052 model score 2.1118 model score 2.0208 model score 1.9575 model score 1.9922 model score 2.0220 model score 1.9428 model score 2.0084 model score 2.0062 model score 1.9681 model score 2.0080 model score 2.0047 model score 1.9183 model score 1.9221 model score 1.4387 model score 1.8818 model score 1.7664 model score 1.7857 model score 1.9151 model score 1.8048 model score 1.8949 model score 1.4798 model score 1.6326 model score 1.6561 model score 2.2730 model score 1.6827 model score 1.3948 model score 2.2625 model score 1.6321 model score 1.9302 model score 1.6620 model score 1.7024 model score 1.6853 model score 1.6813 model score 1.6758 model score 1.6082 model score 1.6831 model score 2.4000 model score 1.6596 model score 1.6884 model score 1.8492 model score 1.8949 model score 1.9235 model score 1.7097 model score 1.6561 model score 2.0627 model score 1.9163 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.7653 model score 0.9674 model score 1.1809 model score 1.2449 model score 1.6341 model score 1.8593 model score 1.6936 model score 1.8489 model score 1.6689 model score 2.0210 model score 1.6685 model score 1.6946 model score 1.8499 model score 1.6542 model score 1.6672 model score 1.8902 model score 1.8537 model score 2.2164 model score 1.8647 model score 2.0988 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.1600 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.4279 model score 1.3863 model score 1.3186 model score 1.3876 model score 1.4267 model score 1.6654 model score 1.4905 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.6268 model score 1.6706 model score 1.7132 model score 1.7488 model score 1.7178 model score 2.2577 model score 2.0920 model score 1.9854 model score 2.1882 model score 2.3165 model score 1.5466 model score 1.8346 model score 1.6536 model score 1.5930 model score 1.8874 model score 2.0659 model score 1.9759 model score 1.9661 model score 1.9845 model score 1.9248 model score 1.4532 model score 1.8821 model score 1.9746 model score 2.0995 model score 1.8589 model score 1.8694 model score 1.4449 model score 1.5517 weight: 0.4173 eval: 1.8949 min: 0.9674 max: 2.4000 weight: 0.4339 eval: 1.8685 min: 0.9674 max: 2.4000 weight: 0.5336 eval: 1.7097 min: 0.9674 max: 2.4000 weight: 0.6290 eval: 1.5580 min: 0.9674 max: 2.4000 weight: 0.6781 eval: 1.4798 min: 0.9674 max: 2.4000 weight: 0.6413 eval: 1.5385 min: 0.9674 max: 2.4000 weight: 0.4678 eval: 1.8146 min: 0.9674 max: 2.4000 weight: 0.5527 eval: 1.6794 min: 0.9674 max: 2.4000 weight: 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weight: 0.8055 eval: 1.2771 min: 0.9674 max: 2.4000 weight: 0.2697 eval: 2.1299 min: 0.9674 max: 2.4000 weight: 0.3838 eval: 1.9483 min: 0.9674 max: 2.4000 weight: 0.3335 eval: 2.0283 min: 0.9674 max: 2.4000 weight: 0.2846 eval: 2.1062 min: 0.9674 max: 2.4000 weight: 0.2713 eval: 2.1274 min: 0.9674 max: 2.4000 weight: 0.3996 eval: 1.9231 min: 0.9674 max: 2.4000 weight: 0.5462 eval: 1.6898 min: 0.9674 max: 2.4000 weight: 0.3401 eval: 2.0179 min: 0.9674 max: 2.4000 weight: 0.3259 eval: 2.0404 min: 0.9674 max: 2.4000 weight: 0.8021 eval: 1.2825 min: 0.9674 max: 2.4000 weight: 0.8055 eval: 1.2771 min: 0.9674 max: 2.4000 weight: 0.8055 eval: 1.2771 min: 0.9674 max: 2.4000 weight: 0.8055 eval: 1.2771 min: 0.9674 max: 2.4000 weight: 0.8055 eval: 1.2771 min: 0.9674 max: 2.4000 weight: 0.8055 eval: 1.2771 min: 0.9674 max: 2.4000 weight: 0.3107 eval: 2.0646 min: 0.9674 max: 2.4000 weight: 0.3581 eval: 1.9892 min: 0.9674 max: 2.4000 weight: 0.4556 eval: 1.8339 min: 0.9674 max: 2.4000 weight: 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weight: 0.5550 eval: 1.6758 min: 0.9674 max: 2.4000 weight: 0.5974 eval: 1.6082 min: 0.9674 max: 2.4000 weight: 0.5504 eval: 1.6831 min: 0.9674 max: 2.4000 weight: 0.1000 eval: 2.4000 min: 0.9674 max: 2.4000 weight: 0.5652 eval: 1.6596 min: 0.9674 max: 2.4000 weight: 0.5471 eval: 1.6884 min: 0.9674 max: 2.4000 weight: 0.4460 eval: 1.8492 min: 0.9674 max: 2.4000 weight: 0.4173 eval: 1.8949 min: 0.9674 max: 2.4000 weight: 0.3994 eval: 1.9235 min: 0.9674 max: 2.4000 weight: 0.5336 eval: 1.7097 min: 0.9674 max: 2.4000 weight: 0.5674 eval: 1.6561 min: 0.9674 max: 2.4000 weight: 0.3119 eval: 2.0627 min: 0.9674 max: 2.4000 weight: 0.4039 eval: 1.9163 min: 0.9674 max: 2.4000 weight: 0.8055 eval: 1.2771 min: 0.9674 max: 2.4000 weight: 0.8055 eval: 1.2771 min: 0.9674 max: 2.4000 weight: 0.8055 eval: 1.2771 min: 0.9674 max: 2.4000 weight: 0.8055 eval: 1.2771 min: 0.9674 max: 2.4000 weight: 0.8055 eval: 1.2771 min: 0.9674 max: 2.4000 weight: 0.4988 eval: 1.7653 min: 0.9674 max: 2.4000 weight: 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0.9674 max: 2.4000 weight: 0.8055 eval: 1.2771 min: 0.9674 max: 2.4000 weight: 0.8055 eval: 1.2771 min: 0.9674 max: 2.4000 weight: 0.8055 eval: 1.2771 min: 0.9674 max: 2.4000 weight: 0.5857 eval: 1.6268 min: 0.9674 max: 2.4000 weight: 0.5582 eval: 1.6706 min: 0.9674 max: 2.4000 weight: 0.5315 eval: 1.7132 min: 0.9674 max: 2.4000 weight: 0.5091 eval: 1.7488 min: 0.9674 max: 2.4000 weight: 0.5286 eval: 1.7178 min: 0.9674 max: 2.4000 weight: 0.1894 eval: 2.2577 min: 0.9674 max: 2.4000 weight: 0.2935 eval: 2.0920 min: 0.9674 max: 2.4000 weight: 0.3605 eval: 1.9854 min: 0.9674 max: 2.4000 weight: 0.2331 eval: 2.1882 min: 0.9674 max: 2.4000 weight: 0.1524 eval: 2.3165 min: 0.9674 max: 2.4000 weight: 0.6361 eval: 1.5466 min: 0.9674 max: 2.4000 weight: 0.4552 eval: 1.8346 min: 0.9674 max: 2.4000 weight: 0.5689 eval: 1.6536 min: 0.9674 max: 2.4000 weight: 0.6070 eval: 1.5930 min: 0.9674 max: 2.4000 weight: 0.4220 eval: 1.8874 min: 0.9674 max: 2.4000 weight: 0.3099 eval: 2.0659 min: 0.9674 max: 2.4000 weight: 0.3664 eval: 1.9759 min: 0.9674 max: 2.4000 weight: 0.3726 eval: 1.9661 min: 0.9674 max: 2.4000 weight: 0.3610 eval: 1.9845 min: 0.9674 max: 2.4000 weight: 0.3986 eval: 1.9248 min: 0.9674 max: 2.4000 weight: 0.6948 eval: 1.4532 min: 0.9674 max: 2.4000 weight: 0.4254 eval: 1.8821 min: 0.9674 max: 2.4000 weight: 0.3673 eval: 1.9746 min: 0.9674 max: 2.4000 weight: 0.2888 eval: 2.0995 min: 0.9674 max: 2.4000 weight: 0.4400 eval: 1.8589 min: 0.9674 max: 2.4000 weight: 0.4334 eval: 1.8694 min: 0.9674 max: 2.4000 weight: 0.7000 eval: 1.4449 min: 0.9674 max: 2.4000 weight: 0.6330 eval: 1.5517 min: 0.9674 max: 2.4000 Adding 10224 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -314.7945, CN propb: -314.7945 weights: 0.3273 constraints: 424 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 424 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 424 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 9800 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 9800 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 10224 # command: