# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0360/ # command:# Making conformation for sequence T0360 numbered 1 through 141 Created new target T0360 from T0360.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0360/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0360//projects/compbio/experiments/protein-predict/casp7/T0360/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0360//projects/compbio/experiments/protein-predict/casp7/T0360/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0360/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0360/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0360)L52.CB, (T0360)I64.CB) [> 3.6030 = 6.0050 < 7.8065] w=1.0000 to align # Constraint # added constraint: constraint((T0360)I53.CB, (T0360)I64.CB) [> 3.5803 = 5.9672 < 7.7573] w=0.9945 to align # Constraint # added constraint: constraint((T0360)D49.CB, (T0360)I64.CB) [> 3.9865 = 6.6442 < 8.6374] w=0.8904 to align # Constraint # added constraint: constraint((T0360)Q23.CB, (T0360)V67.CB) [> 3.1507 = 5.2512 < 6.8266] w=0.8681 to align # Constraint # added constraint: constraint((T0360)K20.CB, (T0360)N70.CB) [> 4.1016 = 6.8360 < 8.8868] w=0.8402 to align # Constraint # added constraint: constraint((T0360)D49.CB, (T0360)L68.CB) [> 4.1256 = 6.8760 < 8.9388] w=0.8331 to align # Constraint # added constraint: constraint((T0360)T24.CB, (T0360)H71.CB) [> 3.8973 = 6.4955 < 8.4441] w=0.8209 to align # Constraint # added constraint: constraint((T0360)I27.CB, (T0360)L52.CB) [> 4.2790 = 7.1317 < 9.2712] w=0.7391 to align # Constraint # added constraint: constraint((T0360)Q23.CB, (T0360)H71.CB) [> 3.9723 = 6.6205 < 8.6066] w=0.6870 to align # Constraint # added constraint: constraint((T0360)K20.CB, (T0360)H71.CB) [> 4.0841 = 6.8068 < 8.8488] w=0.6398 to align # Constraint # added constraint: constraint((T0360)M26.CB, (T0360)L56.CB) [> 3.8894 = 6.4823 < 8.4270] w=0.6397 to align # Constraint # added constraint: constraint((T0360)M26.CB, (T0360)L52.CB) [> 3.7815 = 6.3025 < 8.1932] w=0.6351 to align # Constraint # added constraint: constraint((T0360)M26.CB, (T0360)A55.CB) [> 3.3235 = 5.5391 < 7.2009] w=0.6088 to align # Constraint # added constraint: constraint((T0360)Q23.CB, (T0360)L56.CB) [> 4.1708 = 6.9513 < 9.0366] w=0.6088 to align # Constraint # added constraint: constraint((T0360)I27.CB, (T0360)H71.CB) [> 4.4989 = 7.4982 < 9.7476] w=0.5963 to align # Constraint # added constraint: constraint((T0360)Q23.CB, (T0360)L68.CB) [> 4.3225 = 7.2041 < 9.3653] w=0.5860 to align # Constraint # added constraint: constraint((T0360)Q23.CB, (T0360)L52.CB) [> 3.9879 = 6.6465 < 8.6404] w=0.5794 to align # Constraint # added constraint: constraint((T0360)K22.CB, (T0360)L56.CB) [> 3.8808 = 6.4681 < 8.4085] w=0.5794 to align # Constraint # added constraint: constraint((T0360)Q23.CB, (T0360)I64.CB) [> 4.0464 = 6.7440 < 8.7672] w=0.5444 to align # Constraint # added constraint: constraint((T0360)D49.CB, (T0360)A65.CB) [> 3.8332 = 6.3887 < 8.3053] w=0.5319 to align # Constraint # added constraint: constraint((T0360)L52.CB, (T0360)L68.CB) [> 4.3144 = 7.1907 < 9.3479] w=0.4211 to align # Constraint # added constraint: constraint((T0360)H71.CB, (T0360)G85.CA) [> 3.1519 = 5.2531 < 6.8291] w=0.3724 to align # Constraint # added constraint: constraint((T0360)H71.CB, (T0360)G84.CA) [> 4.0810 = 6.8016 < 8.8421] w=0.3724 to align # Constraint # added constraint: constraint((T0360)G85.CA, (T0360)V98.CB) [> 3.3016 = 5.5027 < 7.1535] w=0.3551 to align # Constraint # added constraint: constraint((T0360)K42.CB, (T0360)L52.CB) [> 3.5476 = 5.9126 < 7.6864] w=0.3516 to align # Constraint # added constraint: constraint((T0360)K42.CB, (T0360)D51.CB) [> 2.7245 = 4.5409 < 5.9031] w=0.3516 to align # Constraint # added constraint: constraint((T0360)N70.CB, (T0360)R83.CB) [> 3.7711 = 6.2852 < 8.1708] w=0.3512 to align # Constraint # added constraint: constraint((T0360)I27.CB, (T0360)V67.CB) [> 3.1576 = 5.2627 < 6.8416] w=0.3375 to align # Constraint # added constraint: constraint((T0360)T17.CB, (T0360)V67.CB) [> 4.1143 = 6.8572 < 8.9144] w=0.3102 to align # Constraint # added constraint: constraint((T0360)H30.CB, (T0360)A55.CB) [> 4.1816 = 6.9694 < 9.0602] w=0.2981 to align # Constraint # added constraint: constraint((T0360)L81.CB, (T0360)A106.CB) [> 2.7780 = 4.6300 < 6.0190] w=0.2979 to align # Constraint # added constraint: constraint((T0360)L81.CB, (T0360)I105.CB) [> 4.0444 = 6.7406 < 8.7628] w=0.2979 to align # Constraint # added constraint: constraint((T0360)I31.CB, (T0360)L52.CB) [> 4.3060 = 7.1767 < 9.3296] w=0.2967 to align # Constraint # added constraint: constraint((T0360)A69.CB, (T0360)R87.CB) [> 4.3718 = 7.2863 < 9.4722] w=0.2791 to align # Constraint # added constraint: constraint((T0360)L81.CB, (T0360)Q103.CB) [> 3.3932 = 5.6554 < 7.3520] w=0.2649 to align # Constraint # added constraint: constraint((T0360)I27.CB, (T0360)I64.CB) [> 4.5023 = 7.5038 < 9.7549] w=0.2369 to align # Constraint # added constraint: constraint((T0360)C72.CB, (T0360)G85.CA) [> 4.1381 = 6.8968 < 8.9659] w=0.2325 to align # Constraint # added constraint: constraint((T0360)L68.CB, (T0360)L81.CB) [> 3.6939 = 6.1565 < 8.0034] w=0.2161 to align # Constraint # added constraint: constraint((T0360)A69.CB, (T0360)L81.CB) [> 3.3979 = 5.6632 < 7.3621] w=0.2161 to align # Constraint # added constraint: constraint((T0360)N70.CB, (T0360)L81.CB) [> 4.3462 = 7.2437 < 9.4168] w=0.2161 to align # Constraint # added constraint: constraint((T0360)Q50.CB, (T0360)A61.CB) [> 4.0695 = 6.7825 < 8.8172] w=0.2129 to align # Constraint # added constraint: constraint((T0360)K34.CB, (T0360)L90.CB) [> 3.6883 = 6.1471 < 7.9913] w=0.2114 to align # Constraint # added constraint: constraint((T0360)P43.CB, (T0360)F88.CB) [> 3.8984 = 6.4974 < 8.4466] w=0.2114 to align # Constraint # added constraint: constraint((T0360)I27.CB, (T0360)L68.CB) [> 4.4070 = 7.3450 < 9.5486] w=0.2112 to align # Constraint # added constraint: constraint((T0360)L68.CB, (T0360)R87.CB) [> 4.5650 = 7.6083 < 9.8908] w=0.2020 to align # Constraint # added constraint: constraint((T0360)L52.CB, (T0360)L90.CB) [> 4.3146 = 7.1911 < 9.3484] w=0.2009 to align # Constraint # added constraint: constraint((T0360)K86.CB, (T0360)V98.CB) [> 4.4858 = 7.4764 < 9.7193] w=0.2009 to align # Constraint # added constraint: constraint((T0360)L78.CB, (T0360)A106.CB) [> 2.7904 = 4.6506 < 6.0458] w=0.1982 to align # Constraint # added constraint: constraint((T0360)A14.CB, (T0360)R83.CB) [> 3.1457 = 5.2428 < 6.8157] w=0.1971 to align # Constraint # added constraint: constraint((T0360)H71.CB, (T0360)E102.CB) [> 4.1649 = 6.9415 < 9.0239] w=0.1967 to align # Constraint # added constraint: constraint((T0360)F41.CB, (T0360)A55.CB) [> 4.5757 = 7.6262 < 9.9141] w=0.1909 to align # Constraint # added constraint: constraint((T0360)G84.CA, (T0360)V98.CB) [> 3.1767 = 5.2945 < 6.8829] w=0.1872 to align # Constraint # added constraint: constraint((T0360)A14.CB, (T0360)T24.CB) [> 3.8206 = 6.3677 < 8.2780] w=0.1824 to align # Constraint # added constraint: constraint((T0360)K86.CB, (T0360)E97.CB) [> 3.5852 = 5.9754 < 7.7680] w=0.1818 to align # Constraint # added constraint: constraint((T0360)C72.CB, (T0360)G84.CA) [> 3.9562 = 6.5937 < 8.5718] w=0.1812 to align # Constraint # added constraint: constraint((T0360)P75.CB, (T0360)P110.CB) [> 3.8254 = 6.3756 < 8.2883] w=0.1763 to align # Constraint # added constraint: constraint((T0360)P43.CB, (T0360)K86.CB) [> 3.8330 = 6.3883 < 8.3048] w=0.1653 to align # Constraint # added constraint: constraint((T0360)P43.CB, (T0360)R87.CB) [> 2.7186 = 4.5311 < 5.8904] w=0.1653 to align # Constraint # added constraint: constraint((T0360)P43.CB, (T0360)V98.CB) [> 4.1615 = 6.9358 < 9.0165] w=0.1653 to align # Constraint # added constraint: constraint((T0360)L44.CB, (T0360)L68.CB) [> 4.3498 = 7.2497 < 9.4246] w=0.1653 to align # Constraint # added constraint: constraint((T0360)L44.CB, (T0360)H71.CB) [> 4.5601 = 7.6002 < 9.8802] w=0.1653 to align # Constraint # added constraint: constraint((T0360)L44.CB, (T0360)C72.CB) [> 4.1589 = 6.9316 < 9.0110] w=0.1653 to align # Constraint # added constraint: constraint((T0360)L44.CB, (T0360)R87.CB) [> 3.7049 = 6.1748 < 8.0273] w=0.1653 to align # Constraint # added constraint: constraint((T0360)L44.CB, (T0360)F88.CB) [> 4.3243 = 7.2071 < 9.3693] w=0.1653 to align # Constraint # added constraint: constraint((T0360)A45.CB, (T0360)R87.CB) [> 2.9799 = 4.9666 < 6.4565] w=0.1653 to align # Constraint # added constraint: constraint((T0360)A45.CB, (T0360)F88.CB) [> 3.6739 = 6.1231 < 7.9600] w=0.1653 to align # Constraint # added constraint: constraint((T0360)A45.CB, (T0360)D89.CB) [> 2.4766 = 4.1277 < 5.3661] w=0.1653 to align # Constraint # added constraint: constraint((T0360)A45.CB, (T0360)R93.CB) [> 4.7900 = 7.9833 < 10.3784] w=0.1653 to align # Constraint # added constraint: constraint((T0360)A45.CB, (T0360)K95.CB) [> 2.4602 = 4.1003 < 5.3304] w=0.1653 to align # Constraint # added constraint: constraint((T0360)L46.CB, (T0360)R87.CB) [> 3.9617 = 6.6028 < 8.5837] w=0.1653 to align # Constraint # added constraint: constraint((T0360)P43.CB, (T0360)G85.CA) [> 4.0613 = 6.7688 < 8.7994] w=0.1653 to align # Constraint # added constraint: constraint((T0360)P43.CB, (T0360)A80.CB) [> 3.5154 = 5.8589 < 7.6166] w=0.1653 to align # Constraint # added constraint: constraint((T0360)P43.CB, (T0360)Y77.CB) [> 4.4261 = 7.3768 < 9.5899] w=0.1653 to align # Constraint # added constraint: constraint((T0360)F41.CB, (T0360)Y77.CB) [> 3.5140 = 5.8566 < 7.6136] w=0.1653 to align # Constraint # added constraint: constraint((T0360)F41.CB, (T0360)R76.CB) [> 4.4778 = 7.4630 < 9.7019] w=0.1653 to align # Constraint # added constraint: constraint((T0360)F41.CB, (T0360)R74.CB) [> 4.4029 = 7.3382 < 9.5396] w=0.1653 to align # Constraint # added constraint: constraint((T0360)R40.CB, (T0360)R76.CB) [> 3.7562 = 6.2603 < 8.1383] w=0.1653 to align # Constraint # added constraint: constraint((T0360)G33.CA, (T0360)L90.CB) [> 4.0025 = 6.6708 < 8.6720] w=0.1653 to align # Constraint # added constraint: constraint((T0360)I31.CB, (T0360)A55.CB) [> 4.3336 = 7.2226 < 9.3894] w=0.1653 to align # Constraint # added constraint: constraint((T0360)A82.CB, (T0360)A106.CB) [> 4.7480 = 7.9133 < 10.2873] w=0.1653 to align # Constraint # added constraint: constraint((T0360)A82.CB, (T0360)Q103.CB) [> 3.3417 = 5.5694 < 7.2403] w=0.1653 to align # Constraint # added constraint: constraint((T0360)K79.CB, (T0360)P110.CB) [> 3.9748 = 6.6247 < 8.6120] w=0.1653 to align # Constraint # added constraint: constraint((T0360)K79.CB, (T0360)A106.CB) [> 4.6796 = 7.7994 < 10.1392] w=0.1653 to align # Constraint # added constraint: constraint((T0360)L46.CB, (T0360)K95.CB) [> 3.9238 = 6.5396 < 8.5015] w=0.1653 to align # Constraint # added constraint: constraint((T0360)I48.CB, (T0360)D89.CB) [> 3.6649 = 6.1082 < 7.9406] w=0.1653 to align # Constraint # added constraint: constraint((T0360)I48.CB, (T0360)L90.CB) [> 4.3540 = 7.2567 < 9.4337] w=0.1653 to align # Constraint # added constraint: constraint((T0360)D51.CB, (T0360)D89.CB) [> 4.1505 = 6.9176 < 8.9928] w=0.1653 to align # Constraint # added constraint: constraint((T0360)D51.CB, (T0360)L90.CB) [> 3.9632 = 6.6053 < 8.5868] w=0.1653 to align # Constraint # added constraint: constraint((T0360)A55.CB, (T0360)L90.CB) [> 4.2778 = 7.1297 < 9.2686] w=0.1653 to align # Constraint # added constraint: constraint((T0360)R73.CB, (T0360)H109.CB) [> 4.3879 = 7.3132 < 9.5072] w=0.1653 to align # Constraint # added constraint: constraint((T0360)R74.CB, (T0360)Q113.CB) [> 4.6627 = 7.7712 < 10.1026] w=0.1653 to align # Constraint # added constraint: constraint((T0360)P75.CB, (T0360)Q113.CB) [> 3.5859 = 5.9765 < 7.7695] w=0.1653 to align # Constraint # added constraint: constraint((T0360)L78.CB, (T0360)Q107.CB) [> 4.6921 = 7.8201 < 10.1662] w=0.1653 to align # Constraint # added constraint: constraint((T0360)L78.CB, (T0360)H109.CB) [> 3.4170 = 5.6951 < 7.4036] w=0.1653 to align # Constraint # added constraint: constraint((T0360)M26.CB, (T0360)Y35.CB) [> 3.8277 = 6.3794 < 8.2933] w=0.1644 to align # Constraint # added constraint: constraint((T0360)T24.CB, (T0360)H109.CB) [> 3.7976 = 6.3293 < 8.2281] w=0.1564 to align # Constraint # added constraint: constraint((T0360)E25.CB, (T0360)F38.CB) [> 3.9814 = 6.6357 < 8.6264] w=0.1557 to align # Constraint # added constraint: constraint((T0360)A55.CB, (T0360)V67.CB) [> 3.7473 = 6.2455 < 8.1191] w=0.1550 to align # Constraint # added constraint: constraint((T0360)D36.CB, (T0360)A55.CB) [> 4.5916 = 7.6527 < 9.9485] w=0.1549 to align # Constraint # added constraint: constraint((T0360)F88.CB, (T0360)E97.CB) [> 3.8302 = 6.3837 < 8.2988] w=0.1549 to align # Constraint # added constraint: constraint((T0360)M26.CB, (T0360)V67.CB) [> 2.8092 = 4.6819 < 6.0865] w=0.1548 to align # Constraint # added constraint: constraint((T0360)G85.CA, (T0360)E102.CB) [> 2.4647 = 4.1079 < 5.3403] w=0.1544 to align # Constraint # added constraint: constraint((T0360)H71.CB, (T0360)A80.CB) [> 3.5591 = 5.9318 < 7.7114] w=0.1540 to align # Constraint # added constraint: constraint((T0360)N70.CB, (T0360)K79.CB) [> 3.6267 = 6.0445 < 7.8579] w=0.1540 to align # Constraint # added constraint: constraint((T0360)K42.CB, (T0360)A55.CB) [> 4.4252 = 7.3753 < 9.5879] w=0.1531 to align # Constraint # added constraint: constraint((T0360)M26.CB, (T0360)K42.CB) [> 4.3588 = 7.2646 < 9.4440] w=0.1531 to align # Constraint # added constraint: constraint((T0360)A14.CB, (T0360)H71.CB) [> 4.6296 = 7.7160 < 10.0308] w=0.1495 to align # Constraint # added constraint: constraint((T0360)A55.CB, (T0360)H71.CB) [> 3.0722 = 5.1203 < 6.6564] w=0.1495 to align # Constraint # added constraint: constraint((T0360)I27.CB, (T0360)A106.CB) [> 4.1553 = 6.9256 < 9.0032] w=0.1435 to align # Constraint # added constraint: constraint((T0360)L78.CB, (T0360)Q103.CB) [> 3.8235 = 6.3726 < 8.2843] w=0.1326 to align # Constraint # added constraint: constraint((T0360)M26.CB, (T0360)I64.CB) [> 4.5390 = 7.5650 < 9.8345] w=0.1325 to align # Constraint # added constraint: constraint((T0360)M26.CB, (T0360)Y59.CB) [> 4.2495 = 7.0824 < 9.2072] w=0.1325 to align # Constraint # added constraint: constraint((T0360)I27.CB, (T0360)L63.CB) [> 4.2207 = 7.0345 < 9.1449] w=0.1262 to align # Constraint # added constraint: constraint((T0360)T24.CB, (T0360)R66.CB) [> 4.6395 = 7.7324 < 10.0522] w=0.1262 to align # Constraint # added constraint: constraint((T0360)T24.CB, (T0360)Y35.CB) [> 3.7919 = 6.3199 < 8.2158] w=0.1159 to align # Constraint # added constraint: constraint((T0360)T17.CB, (T0360)R73.CB) [> 4.5591 = 7.5985 < 9.8781] w=0.1102 to align # Constraint # added constraint: constraint((T0360)M26.CB, (T0360)L63.CB) [> 3.9744 = 6.6241 < 8.6113] w=0.1102 to align # Constraint # added constraint: constraint((T0360)I31.CB, (T0360)L90.CB) [> 2.5492 = 4.2487 < 5.5233] w=0.1102 to align # Constraint # added constraint: constraint((T0360)L11.CB, (T0360)D49.CB) [> 3.2992 = 5.4988 < 7.1484] w=0.1054 to align # Constraint # added constraint: constraint((T0360)I48.CB, (T0360)Y77.CB) [> 3.6529 = 6.0882 < 7.9147] w=0.1051 to align # Constraint # added constraint: constraint((T0360)I27.CB, (T0360)Y59.CB) [> 4.2137 = 7.0228 < 9.1297] w=0.1044 to align # Constraint # added constraint: constraint((T0360)C72.CB, (T0360)A82.CB) [> 3.6469 = 6.0781 < 7.9016] w=0.1041 to align # Constraint # added constraint: constraint((T0360)I53.CB, (T0360)L68.CB) [> 2.8145 = 4.6908 < 6.0981] w=0.1041 to align # Constraint # added constraint: constraint((T0360)L7.CB, (T0360)D49.CB) [> 4.7597 = 7.9328 < 10.3126] w=0.0996 to align # Constraint # added constraint: constraint((T0360)A80.CB, (T0360)I105.CB) [> 3.6209 = 6.0348 < 7.8453] w=0.0996 to align # Constraint # added constraint: constraint((T0360)I48.CB, (T0360)L78.CB) [> 3.7779 = 6.2965 < 8.1854] w=0.0996 to align # Constraint # added constraint: constraint((T0360)A45.CB, (T0360)L81.CB) [> 4.4402 = 7.4004 < 9.6205] w=0.0996 to align # Constraint # added constraint: constraint((T0360)I31.CB, (T0360)I48.CB) [> 3.2345 = 5.3908 < 7.0081] w=0.0991 to align # Constraint # added constraint: constraint((T0360)I31.CB, (T0360)G47.CA) [> 3.7697 = 6.2829 < 8.1677] w=0.0991 to align # Constraint # added constraint: constraint((T0360)H71.CB, (T0360)A106.CB) [> 4.3324 = 7.2208 < 9.3870] w=0.0828 to align # Constraint # added constraint: constraint((T0360)L52.CB, (T0360)V67.CB) [> 2.7936 = 4.6560 < 6.0528] w=0.0766 to align # Constraint # added constraint: constraint((T0360)I53.CB, (T0360)L63.CB) [> 4.7569 = 7.9282 < 10.3066] w=0.0746 to align # Constraint # added constraint: constraint((T0360)I48.CB, (T0360)V67.CB) [> 4.4580 = 7.4300 < 9.6590] w=0.0732 to align # Constraint # added constraint: constraint((T0360)I27.CB, (T0360)R66.CB) [> 2.4021 = 4.0036 < 5.2046] w=0.0711 to align # Constraint # added constraint: constraint((T0360)K20.CB, (T0360)P75.CB) [> 4.6348 = 7.7247 < 10.0421] w=0.0711 to align # Constraint # added constraint: constraint((T0360)L52.CB, (T0360)L63.CB) [> 3.9643 = 6.6071 < 8.5893] w=0.0711 to align # Constraint # added constraint: constraint((T0360)K42.CB, (T0360)F94.CB) [> 4.5131 = 7.5219 < 9.7784] w=0.0652 to align # Constraint # added constraint: constraint((T0360)L68.CB, (T0360)K86.CB) [> 3.8249 = 6.3749 < 8.2874] w=0.0608 to align # Constraint # added constraint: constraint((T0360)I27.CB, (T0360)K86.CB) [> 4.0626 = 6.7709 < 8.8022] w=0.0608 to align # Constraint # added constraint: constraint((T0360)K34.CB, (T0360)N91.CB) [> 3.6063 = 6.0106 < 7.8137] w=0.0606 to align # Constraint # added constraint: constraint((T0360)K34.CB, (T0360)D89.CB) [> 4.5536 = 7.5894 < 9.8662] w=0.0606 to align # Constraint # added constraint: constraint((T0360)K42.CB, (T0360)L90.CB) [> 4.0228 = 6.7047 < 8.7162] w=0.0605 to align # Constraint # added constraint: constraint((T0360)T24.CB, (T0360)A80.CB) [> 4.2900 = 7.1500 < 9.2951] w=0.0578 to align # Constraint # added constraint: constraint((T0360)L68.CB, (T0360)Y77.CB) [> 3.6112 = 6.0186 < 7.8242] w=0.0568 to align # Constraint # added constraint: constraint((T0360)K21.CB, (T0360)R76.CB) [> 4.7363 = 7.8938 < 10.2620] w=0.0551 to align # Constraint # added constraint: constraint((T0360)Y35.CB, (T0360)F88.CB) [> 4.1780 = 6.9633 < 9.0523] w=0.0551 to align # Constraint # added constraint: constraint((T0360)Y35.CB, (T0360)L44.CB) [> 4.1795 = 6.9658 < 9.0555] w=0.0551 to align # Constraint # added constraint: constraint((T0360)Y32.CB, (T0360)L90.CB) [> 3.1155 = 5.1926 < 6.7503] w=0.0551 to align # Constraint # added constraint: constraint((T0360)Y32.CB, (T0360)A55.CB) [> 4.6289 = 7.7148 < 10.0292] w=0.0551 to align # Constraint # added constraint: constraint((T0360)A28.CB, (T0360)I64.CB) [> 4.5896 = 7.6493 < 9.9441] w=0.0551 to align # Constraint # added constraint: constraint((T0360)R73.CB, (T0360)K86.CB) [> 3.4284 = 5.7140 < 7.4282] w=0.0513 to align # Constraint # added constraint: constraint((T0360)I27.CB, (T0360)A45.CB) [> 3.7649 = 6.2748 < 8.1572] w=0.0498 to align # Constraint # added constraint: constraint((T0360)L11.CB, (T0360)A28.CB) [> 4.7035 = 7.8391 < 10.1909] w=0.0498 to align # Constraint # added constraint: constraint((T0360)A45.CB, (T0360)H109.CB) [> 4.4417 = 7.4029 < 9.6237] w=0.0498 to align # Constraint # added constraint: constraint((T0360)I48.CB, (T0360)E102.CB) [> 3.7581 = 6.2636 < 8.1426] w=0.0498 to align # Constraint # added constraint: constraint((T0360)I48.CB, (T0360)I105.CB) [> 3.6103 = 6.0173 < 7.8224] w=0.0498 to align # Constraint # added constraint: constraint((T0360)L52.CB, (T0360)E102.CB) [> 3.3821 = 5.6369 < 7.3280] w=0.0498 to align # Constraint # added constraint: constraint((T0360)A28.CB, (T0360)L46.CB) [> 4.1804 = 6.9674 < 9.0576] w=0.0498 to align # Constraint # added constraint: constraint((T0360)I31.CB, (T0360)L46.CB) [> 4.5297 = 7.5494 < 9.8143] w=0.0498 to align # Constraint # added constraint: constraint((T0360)H30.CB, (T0360)G47.CA) [> 3.6675 = 6.1125 < 7.9462] w=0.0498 to align # Constraint # added constraint: constraint((T0360)H30.CB, (T0360)L46.CB) [> 4.4402 = 7.4003 < 9.6204] w=0.0498 to align # Constraint # added constraint: constraint((T0360)L68.CB, (T0360)F88.CB) [> 4.7592 = 7.9321 < 10.3117] w=0.0498 to align # Constraint # added constraint: constraint((T0360)K34.CB, (T0360)G47.CA) [> 3.0928 = 5.1547 < 6.7011] w=0.0493 to align # Constraint # added constraint: constraint((T0360)D36.CB, (T0360)G47.CA) [> 2.8924 = 4.8207 < 6.2670] w=0.0493 to align # Constraint # added constraint: constraint((T0360)F38.CB, (T0360)G47.CA) [> 2.7941 = 4.6568 < 6.0539] w=0.0493 to align # Constraint # added constraint: constraint((T0360)K86.CB, (T0360)T99.CB) [> 3.4700 = 5.7834 < 7.5184] w=0.0466 to align # Constraint # added constraint: constraint((T0360)F41.CB, (T0360)F88.CB) [> 4.4939 = 7.4899 < 9.7368] w=0.0461 to align # Constraint # added constraint: constraint((T0360)I27.CB, (T0360)L44.CB) [> 4.3045 = 7.1741 < 9.3263] w=0.0461 to align # Constraint # added constraint: constraint((T0360)M26.CB, (T0360)L44.CB) [> 4.7487 = 7.9144 < 10.2887] w=0.0461 to align # Constraint # added constraint: constraint((T0360)L11.CB, (T0360)G85.CA) [> 3.5818 = 5.9697 < 7.7606] w=0.0461 to align # Constraint # added constraint: constraint((T0360)L7.CB, (T0360)G85.CA) [> 4.3339 = 7.2232 < 9.3902] w=0.0461 to align # Constraint # added constraint: constraint((T0360)L44.CB, (T0360)A55.CB) [> 4.5418 = 7.5697 < 9.8406] w=0.0461 to align # Constraint # added constraint: constraint((T0360)M26.CB, (T0360)H71.CB) [> 3.6563 = 6.0938 < 7.9220] w=0.0447 to align # Constraint # added constraint: constraint((T0360)D89.CB, (T0360)V98.CB) [> 3.6643 = 6.1071 < 7.9393] w=0.0421 to align # Constraint # added constraint: constraint((T0360)K42.CB, (T0360)D89.CB) [> 4.1091 = 6.8486 < 8.9031] w=0.0357 to align # Constraint # added constraint: constraint((T0360)I27.CB, (T0360)A55.CB) [> 4.4499 = 7.4165 < 9.6414] w=0.0352 to align # Constraint # added constraint: constraint((T0360)M26.CB, (T0360)I48.CB) [> 3.5928 = 5.9879 < 7.7843] w=0.0345 to align # Constraint # added constraint: constraint((T0360)A14.CB, (T0360)A80.CB) [> 2.6019 = 4.3366 < 5.6375] w=0.0330 to align # Constraint # added constraint: constraint((T0360)L7.CB, (T0360)P75.CB) [> 3.4942 = 5.8236 < 7.5707] w=0.0330 to align # Constraint # added constraint: constraint((T0360)Y77.CB, (T0360)I105.CB) [> 4.0529 = 6.7548 < 8.7812] w=0.0330 to align # Constraint # added constraint: constraint((T0360)L56.CB, (T0360)A65.CB) [> 3.6805 = 6.1342 < 7.9744] w=0.0330 to align # Constraint # added constraint: constraint((T0360)G47.CA, (T0360)C72.CB) [> 4.7994 = 7.9991 < 10.3988] w=0.0330 to align # Constraint # added constraint: constraint((T0360)G47.CA, (T0360)L68.CB) [> 4.0814 = 6.8024 < 8.8431] w=0.0330 to align # Constraint # added constraint: constraint((T0360)L46.CB, (T0360)C72.CB) [> 3.9697 = 6.6163 < 8.6011] w=0.0330 to align # Constraint # added constraint: constraint((T0360)L46.CB, (T0360)H71.CB) [> 3.2027 = 5.3379 < 6.9393] w=0.0330 to align # Constraint # added constraint: constraint((T0360)L46.CB, (T0360)L68.CB) [> 3.2260 = 5.3767 < 6.9897] w=0.0330 to align # Constraint # added constraint: constraint((T0360)Y32.CB, (T0360)D89.CB) [> 3.9430 = 6.5717 < 8.5432] w=0.0249 to align # Constraint # added constraint: constraint((T0360)L68.CB, (T0360)A80.CB) [> 3.3497 = 5.5828 < 7.2577] w=0.0249 to align # Constraint # added constraint: constraint((T0360)M26.CB, (T0360)L68.CB) [> 3.9640 = 6.6067 < 8.5887] w=0.0223 to align # Constraint # added constraint: constraint((T0360)L44.CB, (T0360)Y59.CB) [> 3.9358 = 6.5597 < 8.5276] w=0.0095 to align # Constraint # added constraint: constraint((T0360)L52.CB, (T0360)Y77.CB) [> 3.5867 = 5.9778 < 7.7712] w=0.0055 to align # Constraint # added constraint: constraint((T0360)L52.CB, (T0360)L78.CB) [> 4.4114 = 7.3524 < 9.5581] w=0.0055 to align # Constraint # added constraint: constraint((T0360)A61.CB, (T0360)L78.CB) [> 4.1533 = 6.9222 < 8.9989] w=0.0055 to align # Constraint # added constraint: constraint((T0360)A61.CB, (T0360)H71.CB) [> 4.6131 = 7.6885 < 9.9950] w=0.0055 to align # Constraint # added constraint: constraint((T0360)A55.CB, (T0360)L68.CB) [> 4.5947 = 7.6578 < 9.9551] w=0.0055 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0360/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0360/decoys/ # ReadConformPDB reading from PDB file XXXX_0001.pdb.gz looking for model 1 Error: Reading chain '' from PDB file XXXX_0001.pdb.gz failed---no such chain. # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0360)Q50.C and (T0360)D51.N only 0 apart, marking (T0360)D51.N as missing WARNING: atoms too close: (T0360)D51.N and (T0360)D51.CA only 0 apart, marking (T0360)D51.CA as missing WARNING: atoms too close: (T0360)Q50.C and (T0360)D51.CA only 0 apart, marking (T0360)D51.CA as missing WARNING: atoms too close: (T0360)D51.CA and (T0360)D51.CB only 0 apart, marking (T0360)D51.CB as missing WARNING: atoms too close: (T0360)D51.N and (T0360)D51.CB only 0 apart, marking (T0360)D51.CB as missing WARNING: atoms too close: (T0360)Q50.C and (T0360)D51.CB only 0 apart, marking (T0360)D51.CB as missing WARNING: atoms too close: (T0360)D51.CB and (T0360)D51.CG only 0 apart, marking (T0360)D51.CG as missing WARNING: atoms too close: (T0360)D51.CA and (T0360)D51.CG only 0 apart, marking (T0360)D51.CG as missing WARNING: atoms too close: (T0360)D51.N and (T0360)D51.CG only 0 apart, marking (T0360)D51.CG as missing WARNING: atoms too close: (T0360)Q50.C and (T0360)D51.CG only 0 apart, marking (T0360)D51.CG as missing WARNING: atoms too close: (T0360)D51.CG and (T0360)D51.OD1 only 0 apart, marking (T0360)D51.OD1 as missing WARNING: atoms too close: (T0360)D51.CB and (T0360)D51.OD1 only 0 apart, marking (T0360)D51.OD1 as missing WARNING: atoms too close: (T0360)D51.CA and (T0360)D51.OD1 only 0 apart, marking (T0360)D51.OD1 as missing WARNING: atoms too close: (T0360)D51.N and (T0360)D51.OD1 only 0 apart, marking (T0360)D51.OD1 as missing WARNING: atoms too close: (T0360)Q50.C and (T0360)D51.OD1 only 0 apart, marking (T0360)D51.OD1 as missing WARNING: atoms too close: (T0360)D51.OD1 and (T0360)D51.OD2 only 0 apart, marking (T0360)D51.OD2 as missing WARNING: atoms too close: (T0360)D51.CG and (T0360)D51.OD2 only 0 apart, marking (T0360)D51.OD2 as missing WARNING: atoms too close: (T0360)D51.CB and (T0360)D51.OD2 only 0 apart, marking (T0360)D51.OD2 as missing WARNING: atoms too close: (T0360)D51.CA and (T0360)D51.OD2 only 0 apart, marking (T0360)D51.OD2 as missing WARNING: atoms too close: (T0360)D51.N and (T0360)D51.OD2 only 0 apart, marking (T0360)D51.OD2 as missing WARNING: atoms too close: (T0360)Q50.C and (T0360)D51.OD2 only 0 apart, marking (T0360)D51.OD2 as missing WARNING: atoms too close: (T0360)D51.OD2 and (T0360)D51.O only 0 apart, marking (T0360)D51.O as missing WARNING: atoms too close: (T0360)D51.OD1 and (T0360)D51.O only 0 apart, marking (T0360)D51.O as missing WARNING: atoms too close: (T0360)D51.CG and (T0360)D51.O only 0 apart, marking (T0360)D51.O as missing WARNING: atoms too close: (T0360)D51.CB and (T0360)D51.O only 0 apart, marking (T0360)D51.O as missing WARNING: atoms too close: (T0360)D51.CA and (T0360)D51.O only 0 apart, marking (T0360)D51.O as missing WARNING: atoms too close: (T0360)D51.N and (T0360)D51.O only 0 apart, marking (T0360)D51.O as missing WARNING: atoms too close: (T0360)Q50.C and (T0360)D51.O only 0 apart, marking (T0360)D51.O as missing WARNING: atoms too close: (T0360)D51.O and (T0360)D51.C only 0 apart, marking (T0360)D51.C as missing WARNING: atoms too close: (T0360)D51.OD2 and (T0360)D51.C only 0 apart, marking (T0360)D51.C as missing WARNING: atoms too close: (T0360)D51.OD1 and (T0360)D51.C only 0 apart, marking (T0360)D51.C as missing WARNING: atoms too close: (T0360)D51.CG and (T0360)D51.C only 0 apart, marking (T0360)D51.C as missing WARNING: atoms too close: (T0360)D51.CB and (T0360)D51.C only 0 apart, marking (T0360)D51.C as missing WARNING: atoms too close: (T0360)D51.CA and (T0360)D51.C only 0 apart, marking (T0360)D51.C as missing WARNING: atoms too close: (T0360)D51.N and (T0360)D51.C only 0 apart, marking (T0360)D51.C as missing WARNING: atoms too close: (T0360)Q50.C and (T0360)D51.C only 0 apart, marking (T0360)D51.C as missing # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 Skipped atom 266, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 Skipped atom 55, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 68, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 Skipped atom 55, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 68, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Skipped atom 75, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 88, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 137, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 178, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 255, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz Skipped atom 317, because occupancy 1.000 <= existing 1.000 in servers/MIG_FROST_AL1.pdb.gz # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 35 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 26 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 39 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0360 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 241 model score 1.3778 model score 2.1181 model score 2.4539 model score 2.4708 model score 1.4409 model score 1.4120 model score 1.4488 model score 1.5062 model score 1.4099 model score 1.4411 model score 1.4899 model score 1.4714 model score 1.2696 model score 2.5000 model score 1.5843 model score 1.2564 model score 1.6542 model score 1.6452 model score 1.6114 model score 1.3258 model score 1.3258 model score 1.5054 model score 1.5094 model score 1.6643 model score 1.4266 model score 0.2502 model score 0.1393 model score 0.1759 model score 0.1831 model score 0.1735 model score 0.1787 model score 0.6273 model score 0.1425 model score 1.1723 model score 1.7476 model score 1.8553 model score 1.8388 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.1735 model score 0.1760 model score 0.6315 model score 0.5264 model score 0.4548 model score 0.1813 model score 0.1735 model score 0.6273 model score 0.1760 model score 0.1759 model score 0.8792 model score 1.7941 model score 1.7415 model score 1.8561 model score 1.8664 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.8696 model score 2.2285 model score 1.7173 model score 2.2620 model score 1.8668 model score 0.1575 model score 0.7727 model score 1.9234 model score 1.6831 model score 1.2653 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.1855 model score 1.9507 model score 2.0664 model score 2.9044 model score 1.5393 model score 0.2534 model score 0.1554 model score 0.3900 model score 1.1805 model score 0.2534 model score 0.2560 model score 0.2560 model score 0.2560 model score 1.4346 model score 1.2532 model score 1.2682 model score 1.9062 model score 1.3977 model score 0.5714 model score 1.5395 model score 1.9705 model score 0.8917 model score 1.8257 model score 1.2771 model score 0.1797 model score 0.1801 model score 1.8597 model score 2.4318 model score 2.6939 model score 0.1801 model score 0.2810 model score 1.8909 model score 2.4195 model score 2.6939 model score 0.1731 model score 0.4958 model score 0.9952 model score 0.5506 model score 0.3475 model score 1.6066 model score 2.1801 model score 2.1063 model score 2.1776 model score 1.8457 model score 2.2971 model score 0.1866 model score 0.1865 model score 0.1863 model score 0.1859 model score 0.1864 model score 0.1866 model score 0.1866 model score 0.1778 model score 1.2106 model score 0.1741 model score 0.1910 model score 0.2302 model score 0.2051 model score 0.2302 model score 0.1865 model score 0.1969 model score 0.2067 model score 0.1673 model score 0.1673 model score 0.2067 model score 0.2419 model score 0.1865 model score 0.2619 model score 0.2051 model score 0.2302 model score 0.2302 model score 0.1641 model score 0.1988 model score 0.4202 model score 1.6066 model score 0.3455 model score 0.2161 model score 0.1965 model score 0.2161 model score 0.4016 model score 0.8193 model score 0.1868 model score 0.1754 model score 0.1868 model score 0.3625 model score 0.2619 model score 0.1386 model score 0.5807 model score 0.6807 model score 0.2749 model score 0.3959 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.4352 model score 0.1414 model score 1.8766 model score 0.5883 model score 0.4104 model score 1.6066 model score 2.1751 model score 1.6441 model score 1.9337 model score 2.2132 model score 1.6066 model score 1.7214 model score 2.1338 model score 0.5520 model score 1.2712 model score 1.6269 model score 1.7139 model score 1.6887 model score 1.7982 model score 2.1144 model score 1.2771 model score 0.1455 model score 1.2771 model score 0.1835 model score 0.2161 model score 0.1880 model score 0.1709 model score 0.1585 model score 0.2595 model score 0.3042 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.3298 model score 0.4562 model score 1.4621 model score 2.0543 model score 1.8118 model score 2.1555 model score 1.7760 model score 2.2361 model score 1.4503 model score 2.2067 model score 0.1766 model score 0.9731 model score 1.5358 model score 1.8420 model score 1.6625 model score 0.1891 model score 0.1989 model score 0.2126 model score 1.3069 model score 2.0770 model score 0.1834 model score 0.2554 model score 2.3551 model score 1.8754 model score 1.9336 model score 1.9318 model score 0.7299 model score 0.3160 weight: 0.5967 eval: 1.3778 min: 0.1386 max: 2.9044 weight: 0.3559 eval: 2.1181 min: 0.1386 max: 2.9044 weight: 0.2466 eval: 2.4539 min: 0.1386 max: 2.9044 weight: 0.2411 eval: 2.4708 min: 0.1386 max: 2.9044 weight: 0.5762 eval: 1.4409 min: 0.1386 max: 2.9044 weight: 0.5856 eval: 1.4120 min: 0.1386 max: 2.9044 weight: 0.5737 eval: 1.4488 min: 0.1386 max: 2.9044 weight: 0.5550 eval: 1.5062 min: 0.1386 max: 2.9044 weight: 0.5863 eval: 1.4099 min: 0.1386 max: 2.9044 weight: 0.5762 eval: 1.4411 min: 0.1386 max: 2.9044 weight: 0.5603 eval: 1.4899 min: 0.1386 max: 2.9044 weight: 0.5663 eval: 1.4714 min: 0.1386 max: 2.9044 weight: 0.6320 eval: 1.2696 min: 0.1386 max: 2.9044 weight: 0.2316 eval: 2.5000 min: 0.1386 max: 2.9044 weight: 0.5296 eval: 1.5843 min: 0.1386 max: 2.9044 weight: 0.6363 eval: 1.2564 min: 0.1386 max: 2.9044 weight: 0.5068 eval: 1.6542 min: 0.1386 max: 2.9044 weight: 0.5097 eval: 1.6452 min: 0.1386 max: 2.9044 weight: 0.5207 eval: 1.6114 min: 0.1386 max: 2.9044 weight: 0.6137 eval: 1.3258 min: 0.1386 max: 2.9044 weight: 0.6137 eval: 1.3258 min: 0.1386 max: 2.9044 weight: 0.5553 eval: 1.5054 min: 0.1386 max: 2.9044 weight: 0.5539 eval: 1.5094 min: 0.1386 max: 2.9044 weight: 0.5035 eval: 1.6643 min: 0.1386 max: 2.9044 weight: 0.5809 eval: 1.4266 min: 0.1386 max: 2.9044 weight: 0.9637 eval: 0.2502 min: 0.1386 max: 2.9044 weight: 0.9998 eval: 0.1393 min: 0.1386 max: 2.9044 weight: 0.9879 eval: 0.1759 min: 0.1386 max: 2.9044 weight: 0.9855 eval: 0.1831 min: 0.1386 max: 2.9044 weight: 0.9887 eval: 0.1735 min: 0.1386 max: 2.9044 weight: 0.9869 eval: 0.1787 min: 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weight: 0.4863 eval: 1.7173 min: 0.1386 max: 2.9044 weight: 0.3090 eval: 2.2620 min: 0.1386 max: 2.9044 weight: 0.4376 eval: 1.8668 min: 0.1386 max: 2.9044 weight: 0.9939 eval: 0.1575 min: 0.1386 max: 2.9044 weight: 0.7937 eval: 0.7727 min: 0.1386 max: 2.9044 weight: 0.4192 eval: 1.9234 min: 0.1386 max: 2.9044 weight: 0.4974 eval: 1.6831 min: 0.1386 max: 2.9044 weight: 0.6334 eval: 1.2653 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.9847 eval: 0.1855 min: 0.1386 max: 2.9044 weight: 0.4103 eval: 1.9507 min: 0.1386 max: 2.9044 weight: 0.3727 eval: 2.0664 min: 0.1386 max: 2.9044 weight: 0.1000 eval: 2.9044 min: 0.1386 max: 2.9044 weight: 0.5442 eval: 1.5393 min: 0.1386 max: 2.9044 weight: 0.9626 eval: 0.2534 min: 0.1386 max: 2.9044 weight: 0.9945 eval: 0.1554 min: 0.1386 max: 2.9044 weight: 0.9182 eval: 0.3900 min: 0.1386 max: 2.9044 weight: 0.6610 eval: 1.1805 min: 0.1386 max: 2.9044 weight: 0.9626 eval: 0.2534 min: 0.1386 max: 2.9044 weight: 0.9618 eval: 0.2560 min: 0.1386 max: 2.9044 weight: 0.9618 eval: 0.2560 min: 0.1386 max: 2.9044 weight: 0.9618 eval: 0.2560 min: 0.1386 max: 2.9044 weight: 0.5783 eval: 1.4346 min: 0.1386 max: 2.9044 weight: 0.6373 eval: 1.2532 min: 0.1386 max: 2.9044 weight: 0.6324 eval: 1.2682 min: 0.1386 max: 2.9044 weight: 0.4248 eval: 1.9062 min: 0.1386 max: 2.9044 weight: 0.5903 eval: 1.3977 min: 0.1386 max: 2.9044 weight: 0.8592 eval: 0.5714 min: 0.1386 max: 2.9044 weight: 0.5442 eval: 1.5395 min: 0.1386 max: 2.9044 weight: 0.4039 eval: 1.9705 min: 0.1386 max: 2.9044 weight: 0.7549 eval: 0.8917 min: 0.1386 max: 2.9044 weight: 0.4510 eval: 1.8257 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.9866 eval: 0.1797 min: 0.1386 max: 2.9044 weight: 0.9865 eval: 0.1801 min: 0.1386 max: 2.9044 weight: 0.4400 eval: 1.8597 min: 0.1386 max: 2.9044 weight: 0.2538 eval: 2.4318 min: 0.1386 max: 2.9044 weight: 0.1685 eval: 2.6939 min: 0.1386 max: 2.9044 weight: 0.9865 eval: 0.1801 min: 0.1386 max: 2.9044 weight: 0.9537 eval: 0.2810 min: 0.1386 max: 2.9044 weight: 0.4298 eval: 1.8909 min: 0.1386 max: 2.9044 weight: 0.2578 eval: 2.4195 min: 0.1386 max: 2.9044 weight: 0.1685 eval: 2.6939 min: 0.1386 max: 2.9044 weight: 0.9888 eval: 0.1731 min: 0.1386 max: 2.9044 weight: 0.8838 eval: 0.4958 min: 0.1386 max: 2.9044 weight: 0.7212 eval: 0.9952 min: 0.1386 max: 2.9044 weight: 0.8659 eval: 0.5506 min: 0.1386 max: 2.9044 weight: 0.9320 eval: 0.3475 min: 0.1386 max: 2.9044 weight: 0.5223 eval: 1.6066 min: 0.1386 max: 2.9044 weight: 0.3357 eval: 2.1801 min: 0.1386 max: 2.9044 weight: 0.3597 eval: 2.1063 min: 0.1386 max: 2.9044 weight: 0.3365 eval: 2.1776 min: 0.1386 max: 2.9044 weight: 0.4445 eval: 1.8457 min: 0.1386 max: 2.9044 weight: 0.2976 eval: 2.2971 min: 0.1386 max: 2.9044 weight: 0.9844 eval: 0.1866 min: 0.1386 max: 2.9044 weight: 0.9844 eval: 0.1865 min: 0.1386 max: 2.9044 weight: 0.9845 eval: 0.1863 min: 0.1386 max: 2.9044 weight: 0.9846 eval: 0.1859 min: 0.1386 max: 2.9044 weight: 0.9845 eval: 0.1864 min: 0.1386 max: 2.9044 weight: 0.9844 eval: 0.1866 min: 0.1386 max: 2.9044 weight: 0.9844 eval: 0.1866 min: 0.1386 max: 2.9044 weight: 0.9873 eval: 0.1778 min: 0.1386 max: 2.9044 weight: 0.6512 eval: 1.2106 min: 0.1386 max: 2.9044 weight: 0.9885 eval: 0.1741 min: 0.1386 max: 2.9044 weight: 0.9829 eval: 0.1910 min: 0.1386 max: 2.9044 weight: 0.9702 eval: 0.2302 min: 0.1386 max: 2.9044 weight: 0.9784 eval: 0.2051 min: 0.1386 max: 2.9044 weight: 0.9702 eval: 0.2302 min: 0.1386 max: 2.9044 weight: 0.9844 eval: 0.1865 min: 0.1386 max: 2.9044 weight: 0.9810 eval: 0.1969 min: 0.1386 max: 2.9044 weight: 0.9778 eval: 0.2067 min: 0.1386 max: 2.9044 weight: 0.9907 eval: 0.1673 min: 0.1386 max: 2.9044 weight: 0.9907 eval: 0.1673 min: 0.1386 max: 2.9044 weight: 0.9778 eval: 0.2067 min: 0.1386 max: 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weight: 0.9272 eval: 0.3625 min: 0.1386 max: 2.9044 weight: 0.9599 eval: 0.2619 min: 0.1386 max: 2.9044 weight: 1.0000 eval: 0.1386 min: 0.1386 max: 2.9044 weight: 0.8561 eval: 0.5807 min: 0.1386 max: 2.9044 weight: 0.8236 eval: 0.6807 min: 0.1386 max: 2.9044 weight: 0.9557 eval: 0.2749 min: 0.1386 max: 2.9044 weight: 0.9163 eval: 0.3959 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.9035 eval: 0.4352 min: 0.1386 max: 2.9044 weight: 0.9991 eval: 0.1414 min: 0.1386 max: 2.9044 weight: 0.4344 eval: 1.8766 min: 0.1386 max: 2.9044 weight: 0.8537 eval: 0.5883 min: 0.1386 max: 2.9044 weight: 0.9116 eval: 0.4104 min: 0.1386 max: 2.9044 weight: 0.5223 eval: 1.6066 min: 0.1386 max: 2.9044 weight: 0.3373 eval: 2.1751 min: 0.1386 max: 2.9044 weight: 0.5101 eval: 1.6441 min: 0.1386 max: 2.9044 weight: 0.4159 eval: 1.9337 min: 0.1386 max: 2.9044 weight: 0.3249 eval: 2.2132 min: 0.1386 max: 2.9044 weight: 0.5223 eval: 1.6066 min: 0.1386 max: 2.9044 weight: 0.4850 eval: 1.7214 min: 0.1386 max: 2.9044 weight: 0.3508 eval: 2.1338 min: 0.1386 max: 2.9044 weight: 0.8655 eval: 0.5520 min: 0.1386 max: 2.9044 weight: 0.6315 eval: 1.2712 min: 0.1386 max: 2.9044 weight: 0.5157 eval: 1.6269 min: 0.1386 max: 2.9044 weight: 0.4874 eval: 1.7139 min: 0.1386 max: 2.9044 weight: 0.4956 eval: 1.6887 min: 0.1386 max: 2.9044 weight: 0.4600 eval: 1.7982 min: 0.1386 max: 2.9044 weight: 0.3571 eval: 2.1144 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.9977 eval: 0.1455 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.9854 eval: 0.1835 min: 0.1386 max: 2.9044 weight: 0.9748 eval: 0.2161 min: 0.1386 max: 2.9044 weight: 0.9839 eval: 0.1880 min: 0.1386 max: 2.9044 weight: 0.9895 eval: 0.1709 min: 0.1386 max: 2.9044 weight: 0.9935 eval: 0.1585 min: 0.1386 max: 2.9044 weight: 0.9607 eval: 0.2595 min: 0.1386 max: 2.9044 weight: 0.9461 eval: 0.3042 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.6295 eval: 1.2771 min: 0.1386 max: 2.9044 weight: 0.9378 eval: 0.3298 min: 0.1386 max: 2.9044 weight: 0.8967 eval: 0.4562 min: 0.1386 max: 2.9044 weight: 0.5693 eval: 1.4621 min: 0.1386 max: 2.9044 weight: 0.3766 eval: 2.0543 min: 0.1386 max: 2.9044 weight: 0.4555 eval: 1.8118 min: 0.1386 max: 2.9044 weight: 0.3437 eval: 2.1555 min: 0.1386 max: 2.9044 weight: 0.4672 eval: 1.7760 min: 0.1386 max: 2.9044 weight: 0.3175 eval: 2.2361 min: 0.1386 max: 2.9044 weight: 0.5732 eval: 1.4503 min: 0.1386 max: 2.9044 weight: 0.3270 eval: 2.2067 min: 0.1386 max: 2.9044 weight: 0.9876 eval: 0.1766 min: 0.1386 max: 2.9044 weight: 0.7284 eval: 0.9731 min: 0.1386 max: 2.9044 weight: 0.5454 eval: 1.5358 min: 0.1386 max: 2.9044 weight: 0.4457 eval: 1.8420 min: 0.1386 max: 2.9044 weight: 0.5041 eval: 1.6625 min: 0.1386 max: 2.9044 weight: 0.9836 eval: 0.1891 min: 0.1386 max: 2.9044 weight: 0.9804 eval: 0.1989 min: 0.1386 max: 2.9044 weight: 0.9759 eval: 0.2126 min: 0.1386 max: 2.9044 weight: 0.6198 eval: 1.3069 min: 0.1386 max: 2.9044 weight: 0.3692 eval: 2.0770 min: 0.1386 max: 2.9044 weight: 0.9854 eval: 0.1834 min: 0.1386 max: 2.9044 weight: 0.9620 eval: 0.2554 min: 0.1386 max: 2.9044 weight: 0.2787 eval: 2.3551 min: 0.1386 max: 2.9044 weight: 0.4348 eval: 1.8754 min: 0.1386 max: 2.9044 weight: 0.4159 eval: 1.9336 min: 0.1386 max: 2.9044 weight: 0.4165 eval: 1.9318 min: 0.1386 max: 2.9044 weight: 0.8076 eval: 0.7299 min: 0.1386 max: 2.9044 weight: 0.9423 eval: 0.3160 min: 0.1386 max: 2.9044 Adding 6206 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -204.8875, CN propb: -204.8875 weights: 0.4042 constraints: 190 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 190 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 190 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 6016 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 6016 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 6206 # command: