# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0358/ # command:# Making conformation for sequence T0358 numbered 1 through 87 Created new target T0358 from T0358.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0358/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0358//projects/compbio/experiments/protein-predict/casp7/T0358/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0358//projects/compbio/experiments/protein-predict/casp7/T0358/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0358/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0358/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0358)V40.CB, (T0358)W50.CB) [> 3.8024 = 6.3373 < 8.2385] w=1.0000 to align # Constraint # added constraint: constraint((T0358)L39.CB, (T0358)R51.CB) [> 3.4855 = 5.8092 < 7.5519] w=0.7845 to align # Constraint # added constraint: constraint((T0358)V41.CB, (T0358)W50.CB) [> 3.6070 = 6.0117 < 7.8152] w=0.7447 to align # Constraint # added constraint: constraint((T0358)R38.CB, (T0358)A52.CB) [> 3.6634 = 6.1057 < 7.9374] w=0.7437 to align # Constraint # added constraint: constraint((T0358)L39.CB, (T0358)W50.CB) [> 4.2650 = 7.1083 < 9.2408] w=0.7306 to align # Constraint # added constraint: constraint((T0358)R38.CB, (T0358)W53.CB) [> 3.6550 = 6.0917 < 7.9192] w=0.7214 to align # Constraint # added constraint: constraint((T0358)V40.CB, (T0358)R51.CB) [> 3.7380 = 6.2300 < 8.0990] w=0.7166 to align # Constraint # added constraint: constraint((T0358)V40.CB, (T0358)V49.CB) [> 4.2224 = 7.0373 < 9.1484] w=0.7030 to align # Constraint # added constraint: constraint((T0358)V41.CB, (T0358)R51.CB) [> 3.9014 = 6.5024 < 8.4531] w=0.6721 to align # Constraint # added constraint: constraint((T0358)L39.CB, (T0358)A52.CB) [> 3.4523 = 5.7539 < 7.4801] w=0.6339 to align # Constraint # added constraint: constraint((T0358)R38.CB, (T0358)R51.CB) [> 3.9530 = 6.5884 < 8.5649] w=0.6292 to align # Constraint # added constraint: constraint((T0358)F37.CB, (T0358)W53.CB) [> 3.7612 = 6.2686 < 8.1492] w=0.6090 to align # Constraint # added constraint: constraint((T0358)H36.CB, (T0358)W53.CB) [> 3.4993 = 5.8322 < 7.5818] w=0.5534 to align # Constraint # added constraint: constraint((T0358)L39.CB, (T0358)W53.CB) [> 3.8852 = 6.4754 < 8.4180] w=0.4183 to align # Constraint # added constraint: constraint((T0358)F37.CB, (T0358)A52.CB) [> 4.1383 = 6.8971 < 8.9663] w=0.4105 to align # Constraint # added constraint: constraint((T0358)H36.CB, (T0358)A52.CB) [> 3.2960 = 5.4933 < 7.1413] w=0.3812 to align # Constraint # added constraint: constraint((T0358)H36.CB, (T0358)N54.CB) [> 4.0220 = 6.7034 < 8.7144] w=0.3566 to align # Constraint # added constraint: constraint((T0358)F37.CB, (T0358)N54.CB) [> 3.3263 = 5.5439 < 7.2071] w=0.3465 to align # Constraint # added constraint: constraint((T0358)L29.CB, (T0358)R38.CB) [> 4.0696 = 6.7827 < 8.8175] w=0.3375 to align # Constraint # added constraint: constraint((T0358)H36.CB, (T0358)F55.CB) [> 3.6594 = 6.0991 < 7.9288] w=0.3252 to align # Constraint # added constraint: constraint((T0358)R38.CB, (T0358)W50.CB) [> 3.5740 = 5.9567 < 7.7437] w=0.3218 to align # Constraint # added constraint: constraint((T0358)Y24.CB, (T0358)V41.CB) [> 3.2406 = 5.4010 < 7.0213] w=0.2438 to align # Constraint # added constraint: constraint((T0358)I27.CB, (T0358)V40.CB) [> 4.1120 = 6.8533 < 8.9093] w=0.2368 to align # Constraint # added constraint: constraint((T0358)R38.CB, (T0358)F55.CB) [> 4.4238 = 7.3730 < 9.5848] w=0.2239 to align # Constraint # added constraint: constraint((T0358)I27.CB, (T0358)V41.CB) [> 2.7155 = 4.5258 < 5.8835] w=0.2223 to align # Constraint # added constraint: constraint((T0358)I27.CB, (T0358)L39.CB) [> 3.5949 = 5.9915 < 7.7890] w=0.2121 to align # Constraint # added constraint: constraint((T0358)T28.CB, (T0358)L39.CB) [> 4.2104 = 7.0173 < 9.1225] w=0.2121 to align # Constraint # added constraint: constraint((T0358)L29.CB, (T0358)L39.CB) [> 3.0450 = 5.0750 < 6.5975] w=0.2121 to align # Constraint # added constraint: constraint((T0358)I27.CB, (T0358)R38.CB) [> 3.9187 = 6.5312 < 8.4906] w=0.2105 to align # Constraint # added constraint: constraint((T0358)L29.CB, (T0358)W50.CB) [> 3.7867 = 6.3112 < 8.2046] w=0.2043 to align # Constraint # added constraint: constraint((T0358)V40.CB, (T0358)A52.CB) [> 3.9047 = 6.5078 < 8.4601] w=0.2018 to align # Constraint # added constraint: constraint((T0358)S35.CB, (T0358)N54.CB) [> 4.2441 = 7.0735 < 9.1955] w=0.1974 to align # Constraint # added constraint: constraint((T0358)T28.CB, (T0358)R38.CB) [> 3.5106 = 5.8509 < 7.6062] w=0.1946 to align # Constraint # added constraint: constraint((T0358)F37.CB, (T0358)F55.CB) [> 3.4880 = 5.8134 < 7.5574] w=0.1944 to align # Constraint # added constraint: constraint((T0358)V20.CB, (T0358)L29.CB) [> 3.8308 = 6.3847 < 8.3001] w=0.1770 to align # Constraint # added constraint: constraint((T0358)Q16.CB, (T0358)F37.CB) [> 2.9569 = 4.9281 < 6.4065] w=0.1770 to align # Constraint # added constraint: constraint((T0358)N54.CB, (T0358)L63.CB) [> 3.6019 = 6.0031 < 7.8040] w=0.1758 to align # Constraint # added constraint: constraint((T0358)V41.CB, (T0358)S70.CB) [> 4.1647 = 6.9411 < 9.0235] w=0.1732 to align # Constraint # added constraint: constraint((T0358)V20.CB, (T0358)L39.CB) [> 3.2727 = 5.4545 < 7.0908] w=0.1705 to align # Constraint # added constraint: constraint((T0358)L39.CB, (T0358)L63.CB) [> 4.2723 = 7.1206 < 9.2567] w=0.1555 to align # Constraint # added constraint: constraint((T0358)V41.CB, (T0358)A52.CB) [> 4.5395 = 7.5659 < 9.8357] w=0.1525 to align # Constraint # added constraint: constraint((T0358)T13.CB, (T0358)F37.CB) [> 4.0659 = 6.7764 < 8.8094] w=0.1521 to align # Constraint # added constraint: constraint((T0358)A19.CB, (T0358)M48.CB) [> 3.7852 = 6.3087 < 8.2014] w=0.1382 to align # Constraint # added constraint: constraint((T0358)S35.CB, (T0358)F55.CB) [> 3.1906 = 5.3176 < 6.9128] w=0.1339 to align # Constraint # added constraint: constraint((T0358)F37.CB, (T0358)R51.CB) [> 4.4932 = 7.4886 < 9.7352] w=0.1333 to align # Constraint # added constraint: constraint((T0358)G34.CA, (T0358)E56.CB) [> 3.5838 = 5.9730 < 7.7649] w=0.1327 to align # Constraint # added constraint: constraint((T0358)A52.CB, (T0358)Y66.CB) [> 4.7311 = 7.8851 < 10.2506] w=0.1302 to align # Constraint # added constraint: constraint((T0358)F55.CB, (T0358)N64.CB) [> 4.0703 = 6.7839 < 8.8191] w=0.1265 to align # Constraint # added constraint: constraint((T0358)G34.CA, (T0358)W53.CB) [> 3.7929 = 6.3216 < 8.2181] w=0.1257 to align # Constraint # added constraint: constraint((T0358)D43.CB, (T0358)S70.CB) [> 3.8890 = 6.4817 < 8.4262] w=0.1246 to align # Constraint # added constraint: constraint((T0358)R42.CB, (T0358)I72.CB) [> 3.6147 = 6.0245 < 7.8319] w=0.1191 to align # Constraint # added constraint: constraint((T0358)D31.CB, (T0358)A52.CB) [> 3.8764 = 6.4607 < 8.3989] w=0.1178 to align # Constraint # added constraint: constraint((T0358)I27.CB, (T0358)I67.CB) [> 4.1213 = 6.8688 < 8.9294] w=0.1171 to align # Constraint # added constraint: constraint((T0358)T23.CB, (T0358)D43.CB) [> 4.6775 = 7.7958 < 10.1346] w=0.1150 to align # Constraint # added constraint: constraint((T0358)Y24.CB, (T0358)D43.CB) [> 3.5041 = 5.8401 < 7.5922] w=0.1150 to align # Constraint # added constraint: constraint((T0358)Y24.CB, (T0358)V49.CB) [> 3.9167 = 6.5279 < 8.4862] w=0.1150 to align # Constraint # added constraint: constraint((T0358)S25.CB, (T0358)V41.CB) [> 3.8969 = 6.4948 < 8.4432] w=0.1150 to align # Constraint # added constraint: constraint((T0358)S25.CB, (T0358)R42.CB) [> 2.6812 = 4.4687 < 5.8094] w=0.1150 to align # Constraint # added constraint: constraint((T0358)N26.CB, (T0358)R42.CB) [> 3.1672 = 5.2786 < 6.8622] w=0.1150 to align # Constraint # added constraint: constraint((T0358)I27.CB, (T0358)R42.CB) [> 4.5035 = 7.5059 < 9.7577] w=0.1150 to align # Constraint # added constraint: constraint((T0358)T28.CB, (T0358)V40.CB) [> 3.3072 = 5.5121 < 7.1657] w=0.1150 to align # Constraint # added constraint: constraint((T0358)F37.CB, (T0358)W50.CB) [> 3.5532 = 5.9220 < 7.6986] w=0.1150 to align # Constraint # added constraint: constraint((T0358)Y24.CB, (T0358)M48.CB) [> 4.1279 = 6.8799 < 8.9439] w=0.1121 to align # Constraint # added constraint: constraint((T0358)A17.CB, (T0358)L39.CB) [> 4.3566 = 7.2611 < 9.4394] w=0.1072 to align # Constraint # added constraint: constraint((T0358)V20.CB, (T0358)V41.CB) [> 4.2097 = 7.0161 < 9.1210] w=0.1072 to align # Constraint # added constraint: constraint((T0358)Y24.CB, (T0358)W50.CB) [> 4.5456 = 7.5760 < 9.8488] w=0.1072 to align # Constraint # added constraint: constraint((T0358)N26.CB, (T0358)V49.CB) [> 4.7020 = 7.8366 < 10.1876] w=0.1072 to align # Constraint # added constraint: constraint((T0358)I27.CB, (T0358)V49.CB) [> 2.7627 = 4.6045 < 5.9858] w=0.1072 to align # Constraint # added constraint: constraint((T0358)I27.CB, (T0358)W50.CB) [> 2.9101 = 4.8502 < 6.3053] w=0.1072 to align # Constraint # added constraint: constraint((T0358)T28.CB, (T0358)W50.CB) [> 4.6031 = 7.6719 < 9.9734] w=0.1072 to align # Constraint # added constraint: constraint((T0358)V40.CB, (T0358)N64.CB) [> 4.1545 = 6.9242 < 9.0015] w=0.1072 to align # Constraint # added constraint: constraint((T0358)V40.CB, (T0358)I67.CB) [> 4.0738 = 6.7897 < 8.8266] w=0.1072 to align # Constraint # added constraint: constraint((T0358)M48.CB, (T0358)N64.CB) [> 4.0221 = 6.7035 < 8.7146] w=0.1072 to align # Constraint # added constraint: constraint((T0358)R51.CB, (T0358)N64.CB) [> 3.9996 = 6.6660 < 8.6658] w=0.1072 to align # Constraint # added constraint: constraint((T0358)T23.CB, (T0358)A77.CB) [> 4.3688 = 7.2812 < 9.4656] w=0.1047 to align # Constraint # added constraint: constraint((T0358)V20.CB, (T0358)N54.CB) [> 4.3983 = 7.3306 < 9.5297] w=0.1047 to align # Constraint # added constraint: constraint((T0358)Q16.CB, (T0358)L63.CB) [> 4.2624 = 7.1040 < 9.2351] w=0.1047 to align # Constraint # added constraint: constraint((T0358)S25.CB, (T0358)I72.CB) [> 3.9339 = 6.5564 < 8.5234] w=0.1047 to align # Constraint # added constraint: constraint((T0358)I27.CB, (T0358)I72.CB) [> 3.4607 = 5.7678 < 7.4981] w=0.1047 to align # Constraint # added constraint: constraint((T0358)L39.CB, (T0358)Y66.CB) [> 4.7027 = 7.8379 < 10.1893] w=0.1047 to align # Constraint # added constraint: constraint((T0358)P57.CB, (T0358)Y66.CB) [> 4.7125 = 7.8542 < 10.2105] w=0.1047 to align # Constraint # added constraint: constraint((T0358)I27.CB, (T0358)F37.CB) [> 3.8838 = 6.4731 < 8.4150] w=0.1011 to align # Constraint # added constraint: constraint((T0358)R51.CB, (T0358)Y66.CB) [> 4.5405 = 7.5675 < 9.8377] w=0.0939 to align # Constraint # added constraint: constraint((T0358)A19.CB, (T0358)L63.CB) [> 2.9293 = 4.8821 < 6.3467] w=0.0913 to align # Constraint # added constraint: constraint((T0358)N26.CB, (T0358)F55.CB) [> 4.5869 = 7.6449 < 9.9383] w=0.0886 to align # Constraint # added constraint: constraint((T0358)I27.CB, (T0358)N54.CB) [> 3.0583 = 5.0972 < 6.6264] w=0.0871 to align # Constraint # added constraint: constraint((T0358)Q33.CB, (T0358)F55.CB) [> 3.8791 = 6.4651 < 8.4046] w=0.0818 to align # Constraint # added constraint: constraint((T0358)F12.CB, (T0358)F37.CB) [> 3.9124 = 6.5207 < 8.4769] w=0.0814 to align # Constraint # added constraint: constraint((T0358)F12.CB, (T0358)H36.CB) [> 4.4348 = 7.3914 < 9.6088] w=0.0814 to align # Constraint # added constraint: constraint((T0358)Y66.CB, (T0358)L80.CB) [> 2.7439 = 4.5731 < 5.9450] w=0.0800 to align # Constraint # added constraint: constraint((T0358)V49.CB, (T0358)A59.CB) [> 3.4336 = 5.7226 < 7.4394] w=0.0761 to align # Constraint # added constraint: constraint((T0358)S25.CB, (T0358)H36.CB) [> 3.8458 = 6.4096 < 8.3325] w=0.0756 to align # Constraint # added constraint: constraint((T0358)D32.CB, (T0358)A52.CB) [> 2.6414 = 4.4023 < 5.7229] w=0.0750 to align # Constraint # added constraint: constraint((T0358)T23.CB, (T0358)V49.CB) [> 4.3483 = 7.2472 < 9.4213] w=0.0750 to align # Constraint # added constraint: constraint((T0358)T22.CB, (T0358)M48.CB) [> 4.6280 = 7.7133 < 10.0273] w=0.0750 to align # Constraint # added constraint: constraint((T0358)T22.CB, (T0358)R47.CB) [> 4.6746 = 7.7909 < 10.1282] w=0.0750 to align # Constraint # added constraint: constraint((T0358)V20.CB, (T0358)M48.CB) [> 3.9040 = 6.5067 < 8.4587] w=0.0750 to align # Constraint # added constraint: constraint((T0358)A19.CB, (T0358)R42.CB) [> 4.5911 = 7.6519 < 9.9474] w=0.0750 to align # Constraint # added constraint: constraint((T0358)L29.CB, (T0358)L63.CB) [> 2.7261 = 4.5434 < 5.9065] w=0.0738 to align # Constraint # added constraint: constraint((T0358)T13.CB, (T0358)A77.CB) [> 4.7032 = 7.8387 < 10.1903] w=0.0715 to align # Constraint # added constraint: constraint((T0358)L63.CB, (T0358)L80.CB) [> 4.4120 = 7.3534 < 9.5594] w=0.0715 to align # Constraint # added constraint: constraint((T0358)I67.CB, (T0358)L80.CB) [> 4.6564 = 7.7607 < 10.0889] w=0.0715 to align # Constraint # added constraint: constraint((T0358)T13.CB, (T0358)F55.CB) [> 3.2091 = 5.3484 < 6.9530] w=0.0698 to align # Constraint # added constraint: constraint((T0358)R15.CB, (T0358)E61.CB) [> 4.2491 = 7.0818 < 9.2063] w=0.0698 to align # Constraint # added constraint: constraint((T0358)Q16.CB, (T0358)A59.CB) [> 3.5385 = 5.8974 < 7.6667] w=0.0698 to align # Constraint # added constraint: constraint((T0358)A19.CB, (T0358)N54.CB) [> 3.9573 = 6.5954 < 8.5741] w=0.0698 to align # Constraint # added constraint: constraint((T0358)A19.CB, (T0358)N64.CB) [> 3.8413 = 6.4021 < 8.3227] w=0.0698 to align # Constraint # added constraint: constraint((T0358)T22.CB, (T0358)T78.CB) [> 3.0916 = 5.1526 < 6.6984] w=0.0698 to align # Constraint # added constraint: constraint((T0358)T23.CB, (T0358)L80.CB) [> 4.7066 = 7.8444 < 10.1977] w=0.0698 to align # Constraint # added constraint: constraint((T0358)L7.CB, (T0358)G62.CA) [> 4.7749 = 7.9581 < 10.3456] w=0.0685 to align # Constraint # added constraint: constraint((T0358)L7.CB, (T0358)R65.CB) [> 3.6215 = 6.0358 < 7.8465] w=0.0685 to align # Constraint # added constraint: constraint((T0358)L7.CB, (T0358)Y66.CB) [> 3.4684 = 5.7806 < 7.5148] w=0.0685 to align # Constraint # added constraint: constraint((T0358)G10.CA, (T0358)R51.CB) [> 4.0125 = 6.6875 < 8.6937] w=0.0685 to align # Constraint # added constraint: constraint((T0358)P11.CB, (T0358)A52.CB) [> 2.7273 = 4.5455 < 5.9091] w=0.0685 to align # Constraint # added constraint: constraint((T0358)V49.CB, (T0358)S70.CB) [> 3.9421 = 6.5702 < 8.5413] w=0.0685 to align # Constraint # added constraint: constraint((T0358)Y24.CB, (T0358)W53.CB) [> 3.2177 = 5.3629 < 6.9718] w=0.0632 to align # Constraint # added constraint: constraint((T0358)T23.CB, (T0358)W53.CB) [> 3.2067 = 5.3444 < 6.9478] w=0.0632 to align # Constraint # added constraint: constraint((T0358)T22.CB, (T0358)R38.CB) [> 4.2969 = 7.1615 < 9.3100] w=0.0632 to align # Constraint # added constraint: constraint((T0358)T21.CB, (T0358)R38.CB) [> 3.3995 = 5.6659 < 7.3657] w=0.0632 to align # Constraint # added constraint: constraint((T0358)E30.CB, (T0358)N64.CB) [> 2.9757 = 4.9595 < 6.4474] w=0.0632 to align # Constraint # added constraint: constraint((T0358)T28.CB, (T0358)N64.CB) [> 2.7945 = 4.6576 < 6.0549] w=0.0632 to align # Constraint # added constraint: constraint((T0358)T28.CB, (T0358)G62.CA) [> 2.9059 = 4.8432 < 6.2962] w=0.0632 to align # Constraint # added constraint: constraint((T0358)T28.CB, (T0358)F55.CB) [> 3.4068 = 5.6781 < 7.3815] w=0.0632 to align # Constraint # added constraint: constraint((T0358)L39.CB, (T0358)A59.CB) [> 4.2391 = 7.0651 < 9.1847] w=0.0611 to align # Constraint # added constraint: constraint((T0358)E56.CB, (T0358)I72.CB) [> 4.1402 = 6.9002 < 8.9703] w=0.0510 to align # Constraint # added constraint: constraint((T0358)E30.CB, (T0358)A52.CB) [> 4.4794 = 7.4656 < 9.7053] w=0.0466 to align # Constraint # added constraint: constraint((T0358)V5.CB, (T0358)R65.CB) [> 3.5972 = 5.9954 < 7.7940] w=0.0457 to align # Constraint # added constraint: constraint((T0358)V5.CB, (T0358)R68.CB) [> 3.8531 = 6.4218 < 8.3483] w=0.0457 to align # Constraint # added constraint: constraint((T0358)F12.CB, (T0358)D31.CB) [> 3.2704 = 5.4507 < 7.0859] w=0.0457 to align # Constraint # added constraint: constraint((T0358)F12.CB, (T0358)D32.CB) [> 2.9268 = 4.8779 < 6.3413] w=0.0457 to align # Constraint # added constraint: constraint((T0358)I67.CB, (T0358)A77.CB) [> 4.0401 = 6.7334 < 8.7535] w=0.0457 to align # Constraint # added constraint: constraint((T0358)L7.CB, (T0358)L29.CB) [> 3.7621 = 6.2702 < 8.1513] w=0.0428 to align # Constraint # added constraint: constraint((T0358)D32.CB, (T0358)D43.CB) [> 3.8527 = 6.4212 < 8.3475] w=0.0371 to align # Constraint # added constraint: constraint((T0358)L29.CB, (T0358)R51.CB) [> 4.6258 = 7.7097 < 10.0225] w=0.0371 to align # Constraint # added constraint: constraint((T0358)P9.CB, (T0358)A19.CB) [> 4.0008 = 6.6680 < 8.6683] w=0.0371 to align # Constraint # added constraint: constraint((T0358)L7.CB, (T0358)T23.CB) [> 3.4445 = 5.7409 < 7.4632] w=0.0371 to align # Constraint # added constraint: constraint((T0358)P57.CB, (T0358)R68.CB) [> 3.9564 = 6.5940 < 8.5722] w=0.0371 to align # Constraint # added constraint: constraint((T0358)P8.CB, (T0358)A17.CB) [> 4.1918 = 6.9863 < 9.0822] w=0.0349 to align # Constraint # added constraint: constraint((T0358)R15.CB, (T0358)D58.CB) [> 2.5834 = 4.3057 < 5.5974] w=0.0349 to align # Constraint # added constraint: constraint((T0358)A17.CB, (T0358)P57.CB) [> 4.3044 = 7.1740 < 9.3262] w=0.0349 to align # Constraint # added constraint: constraint((T0358)A17.CB, (T0358)A59.CB) [> 4.6289 = 7.7148 < 10.0293] w=0.0349 to align # Constraint # added constraint: constraint((T0358)A17.CB, (T0358)G60.CA) [> 3.8892 = 6.4820 < 8.4266] w=0.0349 to align # Constraint # added constraint: constraint((T0358)R51.CB, (T0358)I67.CB) [> 4.3204 = 7.2006 < 9.3608] w=0.0338 to align # Constraint # added constraint: constraint((T0358)R14.CB, (T0358)L29.CB) [> 3.4529 = 5.7548 < 7.4813] w=0.0255 to align # Constraint # added constraint: constraint((T0358)Q18.CB, (T0358)L29.CB) [> 4.4165 = 7.3608 < 9.5690] w=0.0255 to align # Constraint # added constraint: constraint((T0358)M48.CB, (T0358)I67.CB) [> 3.1976 = 5.3293 < 6.9281] w=0.0254 to align # Constraint # added constraint: constraint((T0358)S25.CB, (T0358)E56.CB) [> 4.6311 = 7.7184 < 10.0340] w=0.0254 to align # Constraint # added constraint: constraint((T0358)S25.CB, (T0358)E45.CB) [> 4.3755 = 7.2926 < 9.4803] w=0.0254 to align # Constraint # added constraint: constraint((T0358)W50.CB, (T0358)A59.CB) [> 3.6864 = 6.1439 < 7.9871] w=0.0254 to align # Constraint # added constraint: constraint((T0358)S4.CB, (T0358)W53.CB) [> 2.9630 = 4.9383 < 6.4198] w=0.0247 to align # Constraint # added constraint: constraint((T0358)S4.CB, (T0358)N54.CB) [> 2.4662 = 4.1103 < 5.3434] w=0.0247 to align # Constraint # added constraint: constraint((T0358)Q3.CB, (T0358)Y24.CB) [> 4.4516 = 7.4193 < 9.6450] w=0.0238 to align # Constraint # added constraint: constraint((T0358)E30.CB, (T0358)W53.CB) [> 3.5791 = 5.9652 < 7.7547] w=0.0238 to align # Constraint # added constraint: constraint((T0358)T44.CB, (T0358)G71.CA) [> 2.5217 = 4.2029 < 5.4637] w=0.0238 to align # Constraint # added constraint: constraint((T0358)V41.CB, (T0358)R79.CB) [> 4.6326 = 7.7210 < 10.0373] w=0.0228 to align # Constraint # added constraint: constraint((T0358)I67.CB, (T0358)R79.CB) [> 4.3740 = 7.2901 < 9.4771] w=0.0228 to align # Constraint # added constraint: constraint((T0358)V5.CB, (T0358)R42.CB) [> 4.0449 = 6.7416 < 8.7640] w=0.0215 to align # Constraint # added constraint: constraint((T0358)S4.CB, (T0358)V40.CB) [> 4.4008 = 7.3346 < 9.5350] w=0.0215 to align # Constraint # added constraint: constraint((T0358)S4.CB, (T0358)Y24.CB) [> 3.2121 = 5.3534 < 6.9595] w=0.0215 to align # Constraint # added constraint: constraint((T0358)S4.CB, (T0358)V20.CB) [> 4.1407 = 6.9011 < 8.9714] w=0.0215 to align # Constraint # added constraint: constraint((T0358)V40.CB, (T0358)W53.CB) [> 4.0964 = 6.8273 < 8.8755] w=0.0215 to align # Constraint # added constraint: constraint((T0358)T22.CB, (T0358)G60.CA) [> 3.0617 = 5.1027 < 6.6336] w=0.0215 to align # Constraint # added constraint: constraint((T0358)L6.CB, (T0358)L29.CB) [> 4.2274 = 7.0456 < 9.1593] w=0.0215 to align # Constraint # added constraint: constraint((T0358)L6.CB, (T0358)I27.CB) [> 4.6457 = 7.7429 < 10.0657] w=0.0215 to align # Constraint # added constraint: constraint((T0358)L6.CB, (T0358)N26.CB) [> 3.4699 = 5.7832 < 7.5181] w=0.0215 to align # Constraint # added constraint: constraint((T0358)V40.CB, (T0358)L80.CB) [> 3.0327 = 5.0545 < 6.5709] w=0.0119 to align # Constraint # added constraint: constraint((T0358)G62.CA, (T0358)I72.CB) [> 4.7451 = 7.9085 < 10.2811] w=0.0119 to align # Constraint # added constraint: constraint((T0358)V41.CB, (T0358)D58.CB) [> 4.4683 = 7.4471 < 9.6813] w=0.0108 to align # Constraint # added constraint: constraint((T0358)V40.CB, (T0358)E56.CB) [> 4.1008 = 6.8347 < 8.8851] w=0.0108 to align # Constraint # added constraint: constraint((T0358)Y24.CB, (T0358)G62.CA) [> 4.5122 = 7.5203 < 9.7764] w=0.0108 to align # Constraint # added constraint: constraint((T0358)T21.CB, (T0358)L63.CB) [> 4.2437 = 7.0728 < 9.1946] w=0.0108 to align # Constraint # added constraint: constraint((T0358)T21.CB, (T0358)V41.CB) [> 4.7873 = 7.9788 < 10.3724] w=0.0108 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0358/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0358/decoys/ # ReadConformPDB reading from PDB file chimera2-2.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 79 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera4-24.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera5-2.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera5-24.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 13 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 39 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 Skipped atom 190, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 192, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 Skipped atom 190, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 192, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 11 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 11 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain '' from PDB file servers/MIG_FROST_AL1.pdb.gz failed---no such chain. # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 6 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 39 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 16 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 23 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 39 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 9 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 7 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0358)L6.O and (T0358)L7.N only 0.000 apart, marking (T0358)L7.N as missing # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0358 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 258 model score 0.3925 model score 0.5031 model score 0.3932 model score 0.3794 model score 0.8526 model score 0.8065 model score 0.8099 model score 0.8105 model score 1.1284 model score 0.7871 model score 0.7807 model score 0.7910 model score 0.7822 model score 0.7911 model score 0.7661 model score 1.0864 model score 0.6736 model score 0.6387 model score 2.0024 model score 0.7360 model score 0.7402 model score 0.6662 model score 0.3258 model score 0.7588 model score 0.6662 model score 0.3258 model score 0.4893 model score 0.6743 model score 0.3416 model score 0.5663 model score 2.0977 model score 1.9859 model score 0.6846 model score 0.5286 model score 0.6569 model score 0.6739 model score 0.7594 model score 1.3397 model score 1.6669 model score 0.9905 model score 0.6422 model score 1.5803 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.7772 model score 0.5914 model score 0.7657 model score 0.6395 model score 0.4995 model score 0.6595 model score 0.5914 model score 0.6569 model score 0.6846 model score 0.6160 model score 0.7402 model score 1.5300 model score 0.7588 model score 0.6082 model score 0.7360 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.1489 model score 1.4982 model score 2.1285 model score 1.4621 model score 2.0930 model score 0.7131 model score 1.9920 model score 1.3643 model score 2.3215 model score 2.2479 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.8135 model score 0.6160 model score 0.7125 model score 0.7842 model score 0.5537 model score 0.5380 model score 0.6869 model score 0.9268 model score 1.4767 model score 1.4868 model score 0.6274 model score 0.6274 model score 0.5535 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.5839 model score 0.5947 model score 0.4613 model score 0.6537 model score 0.6928 model score 0.6840 model score 0.4147 model score 2.1647 model score 1.5055 model score 0.7008 model score 0.8880 model score 0.4191 model score 0.9149 model score 0.6354 model score 0.7008 model score 1.9950 model score 0.7913 model score 0.7795 model score 0.7768 model score 0.7737 model score 0.7717 model score 1.2771 model score 1.7018 model score 1.7953 model score 1.6067 model score 1.2575 model score 1.3555 model score 0.2749 model score 0.4860 model score 0.3424 model score 0.4595 model score 0.4305 model score 0.4566 model score 0.3531 model score 0.3634 model score 0.4685 model score 2.1850 model score 0.8365 model score 1.5797 model score 0.3486 model score 0.3370 model score 0.3815 model score 0.7032 model score 0.5077 model score 0.4339 model score 0.7028 model score 0.5745 model score 0.4240 model score 0.3486 model score 0.4906 model score 0.6592 model score 0.3815 model score 0.3370 model score 0.6884 model score 0.8788 model score 0.6812 model score 0.8576 model score 0.5757 model score 0.4317 model score 0.8566 model score 0.5371 model score 0.6860 model score 0.6582 model score 0.4173 model score 0.6771 model score 0.6225 model score 0.8673 model score 0.4944 model score 0.3486 model score 0.4906 model score 0.3236 model score 0.3815 model score 0.3370 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.3654 model score 0.3139 model score 0.4994 model score 0.3203 model score 1.1909 model score 0.5245 model score 0.6088 model score 1.8155 model score 0.5265 model score 0.9119 model score 0.6564 model score 0.6526 model score 0.5364 model score 0.7365 model score 0.8190 model score 1.4967 model score 1.4962 model score 2.2841 model score 2.0001 model score 1.3993 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2701 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.1767 model score 0.2614 model score 0.0940 model score 0.1034 model score 0.0512 model score 0.6068 model score 0.5818 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.5033 model score 1.4055 model score 1.2429 model score 2.1650 model score 2.0243 model score 2.0209 model score 2.0916 model score 2.1019 model score 1.6233 model score 1.4784 model score 0.6950 model score 1.9429 model score 0.3704 model score 2.0956 model score 0.9835 model score 1.8310 model score 1.8385 model score 2.1874 model score 1.4367 model score 1.4367 model score 0.4446 model score 0.9531 model score 1.7846 model score 1.4627 model score 1.0143 model score 0.5514 model score 2.0252 model score 1.4799 weight: 0.8647 eval: 0.3925 min: 0.0512 max: 2.3215 weight: 0.8209 eval: 0.5031 min: 0.0512 max: 2.3215 weight: 0.8644 eval: 0.3932 min: 0.0512 max: 2.3215 weight: 0.8699 eval: 0.3794 min: 0.0512 max: 2.3215 weight: 0.6823 eval: 0.8526 min: 0.0512 max: 2.3215 weight: 0.7006 eval: 0.8065 min: 0.0512 max: 2.3215 weight: 0.6992 eval: 0.8099 min: 0.0512 max: 2.3215 weight: 0.6990 eval: 0.8105 min: 0.0512 max: 2.3215 weight: 0.5730 eval: 1.1284 min: 0.0512 max: 2.3215 weight: 0.7083 eval: 0.7871 min: 0.0512 max: 2.3215 weight: 0.7108 eval: 0.7807 min: 0.0512 max: 2.3215 weight: 0.7067 eval: 0.7910 min: 0.0512 max: 2.3215 weight: 0.7102 eval: 0.7822 min: 0.0512 max: 2.3215 weight: 0.7067 eval: 0.7911 min: 0.0512 max: 2.3215 weight: 0.7166 eval: 0.7661 min: 0.0512 max: 2.3215 weight: 0.5896 eval: 1.0864 min: 0.0512 max: 2.3215 weight: 0.7533 eval: 0.6736 min: 0.0512 max: 2.3215 weight: 0.7671 eval: 0.6387 min: 0.0512 max: 2.3215 weight: 0.2265 eval: 2.0024 min: 0.0512 max: 2.3215 weight: 0.7285 eval: 0.7360 min: 0.0512 max: 2.3215 weight: 0.7269 eval: 0.7402 min: 0.0512 max: 2.3215 weight: 0.7562 eval: 0.6662 min: 0.0512 max: 2.3215 weight: 0.8912 eval: 0.3258 min: 0.0512 max: 2.3215 weight: 0.7195 eval: 0.7588 min: 0.0512 max: 2.3215 weight: 0.7562 eval: 0.6662 min: 0.0512 max: 2.3215 weight: 0.8912 eval: 0.3258 min: 0.0512 max: 2.3215 weight: 0.8263 eval: 0.4893 min: 0.0512 max: 2.3215 weight: 0.7530 eval: 0.6743 min: 0.0512 max: 2.3215 weight: 0.8849 eval: 0.3416 min: 0.0512 max: 2.3215 weight: 0.7958 eval: 0.5663 min: 0.0512 max: 2.3215 weight: 0.1887 eval: 2.0977 min: 0.0512 max: 2.3215 weight: 0.2331 eval: 1.9859 min: 0.0512 max: 2.3215 weight: 0.7489 eval: 0.6846 min: 0.0512 max: 2.3215 weight: 0.8107 eval: 0.5286 min: 0.0512 max: 2.3215 weight: 0.7599 eval: 0.6569 min: 0.0512 max: 2.3215 weight: 0.7532 eval: 0.6739 min: 0.0512 max: 2.3215 weight: 0.7193 eval: 0.7594 min: 0.0512 max: 2.3215 weight: 0.4892 eval: 1.3397 min: 0.0512 max: 2.3215 weight: 0.3595 eval: 1.6669 min: 0.0512 max: 2.3215 weight: 0.6276 eval: 0.9905 min: 0.0512 max: 2.3215 weight: 0.7657 eval: 0.6422 min: 0.0512 max: 2.3215 weight: 0.3938 eval: 1.5803 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.7122 eval: 0.7772 min: 0.0512 max: 2.3215 weight: 0.7858 eval: 0.5914 min: 0.0512 max: 2.3215 weight: 0.7168 eval: 0.7657 min: 0.0512 max: 2.3215 weight: 0.7668 eval: 0.6395 min: 0.0512 max: 2.3215 weight: 0.8223 eval: 0.4995 min: 0.0512 max: 2.3215 weight: 0.7589 eval: 0.6595 min: 0.0512 max: 2.3215 weight: 0.7858 eval: 0.5914 min: 0.0512 max: 2.3215 weight: 0.7599 eval: 0.6569 min: 0.0512 max: 2.3215 weight: 0.7489 eval: 0.6846 min: 0.0512 max: 2.3215 weight: 0.7761 eval: 0.6160 min: 0.0512 max: 2.3215 weight: 0.7269 eval: 0.7402 min: 0.0512 max: 2.3215 weight: 0.4138 eval: 1.5300 min: 0.0512 max: 2.3215 weight: 0.7195 eval: 0.7588 min: 0.0512 max: 2.3215 weight: 0.7792 eval: 0.6082 min: 0.0512 max: 2.3215 weight: 0.7285 eval: 0.7360 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.1684 eval: 2.1489 min: 0.0512 max: 2.3215 weight: 0.4264 eval: 1.4982 min: 0.0512 max: 2.3215 weight: 0.1765 eval: 2.1285 min: 0.0512 max: 2.3215 weight: 0.4407 eval: 1.4621 min: 0.0512 max: 2.3215 weight: 0.1906 eval: 2.0930 min: 0.0512 max: 2.3215 weight: 0.7376 eval: 0.7131 min: 0.0512 max: 2.3215 weight: 0.2306 eval: 1.9920 min: 0.0512 max: 2.3215 weight: 0.4795 eval: 1.3643 min: 0.0512 max: 2.3215 weight: 0.1000 eval: 2.3215 min: 0.0512 max: 2.3215 weight: 0.1292 eval: 2.2479 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.6978 eval: 0.8135 min: 0.0512 max: 2.3215 weight: 0.7761 eval: 0.6160 min: 0.0512 max: 2.3215 weight: 0.7379 eval: 0.7125 min: 0.0512 max: 2.3215 weight: 0.7094 eval: 0.7842 min: 0.0512 max: 2.3215 weight: 0.8008 eval: 0.5537 min: 0.0512 max: 2.3215 weight: 0.8070 eval: 0.5380 min: 0.0512 max: 2.3215 weight: 0.7480 eval: 0.6869 min: 0.0512 max: 2.3215 weight: 0.6529 eval: 0.9268 min: 0.0512 max: 2.3215 weight: 0.4349 eval: 1.4767 min: 0.0512 max: 2.3215 weight: 0.4309 eval: 1.4868 min: 0.0512 max: 2.3215 weight: 0.7716 eval: 0.6274 min: 0.0512 max: 2.3215 weight: 0.7716 eval: 0.6274 min: 0.0512 max: 2.3215 weight: 0.8009 eval: 0.5535 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.7888 eval: 0.5839 min: 0.0512 max: 2.3215 weight: 0.7845 eval: 0.5947 min: 0.0512 max: 2.3215 weight: 0.8374 eval: 0.4613 min: 0.0512 max: 2.3215 weight: 0.7612 eval: 0.6537 min: 0.0512 max: 2.3215 weight: 0.7457 eval: 0.6928 min: 0.0512 max: 2.3215 weight: 0.7491 eval: 0.6840 min: 0.0512 max: 2.3215 weight: 0.8559 eval: 0.4147 min: 0.0512 max: 2.3215 weight: 0.1622 eval: 2.1647 min: 0.0512 max: 2.3215 weight: 0.4235 eval: 1.5055 min: 0.0512 max: 2.3215 weight: 0.7425 eval: 0.7008 min: 0.0512 max: 2.3215 weight: 0.6683 eval: 0.8880 min: 0.0512 max: 2.3215 weight: 0.8541 eval: 0.4191 min: 0.0512 max: 2.3215 weight: 0.6576 eval: 0.9149 min: 0.0512 max: 2.3215 weight: 0.7684 eval: 0.6354 min: 0.0512 max: 2.3215 weight: 0.7425 eval: 0.7008 min: 0.0512 max: 2.3215 weight: 0.2294 eval: 1.9950 min: 0.0512 max: 2.3215 weight: 0.7066 eval: 0.7913 min: 0.0512 max: 2.3215 weight: 0.7113 eval: 0.7795 min: 0.0512 max: 2.3215 weight: 0.7124 eval: 0.7768 min: 0.0512 max: 2.3215 weight: 0.7136 eval: 0.7737 min: 0.0512 max: 2.3215 weight: 0.7144 eval: 0.7717 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.3457 eval: 1.7018 min: 0.0512 max: 2.3215 weight: 0.3086 eval: 1.7953 min: 0.0512 max: 2.3215 weight: 0.3834 eval: 1.6067 min: 0.0512 max: 2.3215 weight: 0.5218 eval: 1.2575 min: 0.0512 max: 2.3215 weight: 0.4829 eval: 1.3555 min: 0.0512 max: 2.3215 weight: 0.9113 eval: 0.2749 min: 0.0512 max: 2.3215 weight: 0.8276 eval: 0.4860 min: 0.0512 max: 2.3215 weight: 0.8846 eval: 0.3424 min: 0.0512 max: 2.3215 weight: 0.8381 eval: 0.4595 min: 0.0512 max: 2.3215 weight: 0.8496 eval: 0.4305 min: 0.0512 max: 2.3215 weight: 0.8393 eval: 0.4566 min: 0.0512 max: 2.3215 weight: 0.8803 eval: 0.3531 min: 0.0512 max: 2.3215 weight: 0.8762 eval: 0.3634 min: 0.0512 max: 2.3215 weight: 0.8346 eval: 0.4685 min: 0.0512 max: 2.3215 weight: 0.1541 eval: 2.1850 min: 0.0512 max: 2.3215 weight: 0.6887 eval: 0.8365 min: 0.0512 max: 2.3215 weight: 0.3941 eval: 1.5797 min: 0.0512 max: 2.3215 weight: 0.8821 eval: 0.3486 min: 0.0512 max: 2.3215 weight: 0.8867 eval: 0.3370 min: 0.0512 max: 2.3215 weight: 0.8691 eval: 0.3815 min: 0.0512 max: 2.3215 weight: 0.7415 eval: 0.7032 min: 0.0512 max: 2.3215 weight: 0.8190 eval: 0.5077 min: 0.0512 max: 2.3215 weight: 0.8483 eval: 0.4339 min: 0.0512 max: 2.3215 weight: 0.7417 eval: 0.7028 min: 0.0512 max: 2.3215 weight: 0.7926 eval: 0.5745 min: 0.0512 max: 2.3215 weight: 0.8522 eval: 0.4240 min: 0.0512 max: 2.3215 weight: 0.8821 eval: 0.3486 min: 0.0512 max: 2.3215 weight: 0.8258 eval: 0.4906 min: 0.0512 max: 2.3215 weight: 0.7590 eval: 0.6592 min: 0.0512 max: 2.3215 weight: 0.8691 eval: 0.3815 min: 0.0512 max: 2.3215 weight: 0.8867 eval: 0.3370 min: 0.0512 max: 2.3215 weight: 0.7474 eval: 0.6884 min: 0.0512 max: 2.3215 weight: 0.6719 eval: 0.8788 min: 0.0512 max: 2.3215 weight: 0.7503 eval: 0.6812 min: 0.0512 max: 2.3215 weight: 0.6803 eval: 0.8576 min: 0.0512 max: 2.3215 weight: 0.7921 eval: 0.5757 min: 0.0512 max: 2.3215 weight: 0.8491 eval: 0.4317 min: 0.0512 max: 2.3215 weight: 0.6807 eval: 0.8566 min: 0.0512 max: 2.3215 weight: 0.8074 eval: 0.5371 min: 0.0512 max: 2.3215 weight: 0.7483 eval: 0.6860 min: 0.0512 max: 2.3215 weight: 0.7594 eval: 0.6582 min: 0.0512 max: 2.3215 weight: 0.8549 eval: 0.4173 min: 0.0512 max: 2.3215 weight: 0.7519 eval: 0.6771 min: 0.0512 max: 2.3215 weight: 0.7735 eval: 0.6225 min: 0.0512 max: 2.3215 weight: 0.6765 eval: 0.8673 min: 0.0512 max: 2.3215 weight: 0.8243 eval: 0.4944 min: 0.0512 max: 2.3215 weight: 0.8821 eval: 0.3486 min: 0.0512 max: 2.3215 weight: 0.8258 eval: 0.4906 min: 0.0512 max: 2.3215 weight: 0.8920 eval: 0.3236 min: 0.0512 max: 2.3215 weight: 0.8691 eval: 0.3815 min: 0.0512 max: 2.3215 weight: 0.8867 eval: 0.3370 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.8754 eval: 0.3654 min: 0.0512 max: 2.3215 weight: 0.8959 eval: 0.3139 min: 0.0512 max: 2.3215 weight: 0.8223 eval: 0.4994 min: 0.0512 max: 2.3215 weight: 0.8933 eval: 0.3203 min: 0.0512 max: 2.3215 weight: 0.5482 eval: 1.1909 min: 0.0512 max: 2.3215 weight: 0.8124 eval: 0.5245 min: 0.0512 max: 2.3215 weight: 0.7790 eval: 0.6088 min: 0.0512 max: 2.3215 weight: 0.3006 eval: 1.8155 min: 0.0512 max: 2.3215 weight: 0.8116 eval: 0.5265 min: 0.0512 max: 2.3215 weight: 0.6588 eval: 0.9119 min: 0.0512 max: 2.3215 weight: 0.7601 eval: 0.6564 min: 0.0512 max: 2.3215 weight: 0.7616 eval: 0.6526 min: 0.0512 max: 2.3215 weight: 0.8077 eval: 0.5364 min: 0.0512 max: 2.3215 weight: 0.7283 eval: 0.7365 min: 0.0512 max: 2.3215 weight: 0.6956 eval: 0.8190 min: 0.0512 max: 2.3215 weight: 0.4270 eval: 1.4967 min: 0.0512 max: 2.3215 weight: 0.4272 eval: 1.4962 min: 0.0512 max: 2.3215 weight: 0.1148 eval: 2.2841 min: 0.0512 max: 2.3215 weight: 0.2274 eval: 2.0001 min: 0.0512 max: 2.3215 weight: 0.4656 eval: 1.3993 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5168 eval: 1.2701 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.9502 eval: 0.1767 min: 0.0512 max: 2.3215 weight: 0.9167 eval: 0.2614 min: 0.0512 max: 2.3215 weight: 0.9830 eval: 0.0940 min: 0.0512 max: 2.3215 weight: 0.9793 eval: 0.1034 min: 0.0512 max: 2.3215 weight: 1.0000 eval: 0.0512 min: 0.0512 max: 2.3215 weight: 0.7797 eval: 0.6068 min: 0.0512 max: 2.3215 weight: 0.7897 eval: 0.5818 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.5140 eval: 1.2771 min: 0.0512 max: 2.3215 weight: 0.4243 eval: 1.5033 min: 0.0512 max: 2.3215 weight: 0.4631 eval: 1.4055 min: 0.0512 max: 2.3215 weight: 0.5276 eval: 1.2429 min: 0.0512 max: 2.3215 weight: 0.1621 eval: 2.1650 min: 0.0512 max: 2.3215 weight: 0.2178 eval: 2.0243 min: 0.0512 max: 2.3215 weight: 0.2192 eval: 2.0209 min: 0.0512 max: 2.3215 weight: 0.1912 eval: 2.0916 min: 0.0512 max: 2.3215 weight: 0.1871 eval: 2.1019 min: 0.0512 max: 2.3215 weight: 0.3768 eval: 1.6233 min: 0.0512 max: 2.3215 weight: 0.4342 eval: 1.4784 min: 0.0512 max: 2.3215 weight: 0.7448 eval: 0.6950 min: 0.0512 max: 2.3215 weight: 0.2501 eval: 1.9429 min: 0.0512 max: 2.3215 weight: 0.8735 eval: 0.3704 min: 0.0512 max: 2.3215 weight: 0.1895 eval: 2.0956 min: 0.0512 max: 2.3215 weight: 0.6304 eval: 0.9835 min: 0.0512 max: 2.3215 weight: 0.2945 eval: 1.8310 min: 0.0512 max: 2.3215 weight: 0.2915 eval: 1.8385 min: 0.0512 max: 2.3215 weight: 0.1532 eval: 2.1874 min: 0.0512 max: 2.3215 weight: 0.4508 eval: 1.4367 min: 0.0512 max: 2.3215 weight: 0.4508 eval: 1.4367 min: 0.0512 max: 2.3215 weight: 0.8440 eval: 0.4446 min: 0.0512 max: 2.3215 weight: 0.6425 eval: 0.9531 min: 0.0512 max: 2.3215 weight: 0.3128 eval: 1.7846 min: 0.0512 max: 2.3215 weight: 0.4405 eval: 1.4627 min: 0.0512 max: 2.3215 weight: 0.6182 eval: 1.0143 min: 0.0512 max: 2.3215 weight: 0.8017 eval: 0.5514 min: 0.0512 max: 2.3215 weight: 0.2175 eval: 2.0252 min: 0.0512 max: 2.3215 weight: 0.4336 eval: 1.4799 min: 0.0512 max: 2.3215 Adding 2827 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -168.6299, CN propb: -168.6299 weights: 0.2523 constraints: 194 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 194 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 194 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 2633 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 2633 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 2827 # command: