# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/
# command:# reading dunbrack-2191.atoms
#
#computed average backbone with maximum peptide_sq_deviance = 0.002
# computed average trans backbone unit from 53157 examples
# computed average trans backbone unit before proline from 2010 examples
# computed average cis backbone unit from 97 examples
# trans (non-proline) backbone unit:
#	  CA= -2.2087 1.0126 -0.0030
#	   O= -0.1499 2.2440 0.0016
#	   C= -0.6889 1.1368 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4581 -0.0000 0.0000
# cis backbone unit:
#	  CA= -0.1436 2.4534 -0.0002
#	   O= -2.0284 0.9742 0.0015
#	   C= -0.8018 1.0771 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4668 0.0000 0.0000
# trans backbone unit before proline:
#	  CA= -2.2100 1.0631 -0.0014
#	   O= -0.1236 2.2458 0.0075
#	   C= -0.6872 1.1517 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4660 0.0000 0.0000


# After reading dunbrack-2191.atoms have 2191 chains in training database
#  Count of chains,residues,atoms: 2191,500310,3902258
#  493341 residues have no bad marker
#  3226 residues lack atoms needed to compute omega
#  1453 residues have cis peptide
#  number of each bad type:
#	NON_STANDARD_RESIDUE	4
#	HAS_OXT	1167
#	TOO_MANY_ATOMS	1
#	TOO_FEW_ATOMS	3052
#	HAS_UNKNOWN_ATOMS	9
#	HAS_DUPLICATE_ATOMS	0
#	CHAIN_BREAK_BEFORE	979
#	NON_PLANAR_PEPTIDE	888
#	BAD_PEPTIDE	2680
#  Note: may sum to more than number of residues, 
#    because one residue may have multiple problems
# command:# Reading rotamer library from dunbrack-2191.rot
# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/
# command:# ReadAtomType exp-pdb.types
Read AtomType exp-pdb with 49 types.
# command:# ReadClashTable exp-pdb-2191-2symm.clash
# Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2
# command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0357/
# command:# Making conformation for sequence T0357 numbered 1 through 141
Created new target T0357 from T0357.a2m
# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0357/
# command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0357//projects/compbio/experiments/protein-predict/casp7/T0357/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0357//projects/compbio/experiments/protein-predict/casp7/T0357/align.constraints_v3.costfcn.gz for input
Trying /projects/compbio/experiments/protein-predict/casp7/T0357/align.constraints_v3.costfcn
# reading script from file /projects/compbio/experiments/protein-predict/casp7/T0357/align.constraints_v3.costfcn
# future Constraint commands -> align
# future HelixConstraint commands -> align
# future StrandConstraint commands -> align
# future SheetConstraint commands -> align
# future Hbond commands -> align
# future SSbond commands -> align
# Constraint # added constraint: constraint((T0357)L69.CB, (T0357)I82.CB) [> 4.1452 = 6.9086 < 8.9812] w=1.0000 to align
# Constraint # added constraint: constraint((T0357)R52.CB, (T0357)V77.CB) [> 4.0574 = 6.7624 < 8.7911] w=0.9166 to align
# Constraint # added constraint: constraint((T0357)R52.CB, (T0357)A78.CB) [> 3.3192 = 5.5321 < 7.1917] w=0.8316 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)K80.CB) [> 3.8852 = 6.4753 < 8.4179] w=0.8246 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)A81.CB) [> 3.8065 = 6.3442 < 8.2475] w=0.8246 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)I82.CB) [> 3.5824 = 5.9707 < 7.7620] w=0.8246 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)I82.CB) [> 3.8576 = 6.4293 < 8.3581] w=0.8246 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)I83.CB) [> 4.0582 = 6.7637 < 8.7928] w=0.8246 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)N84.CB) [> 3.4988 = 5.8313 < 7.5807] w=0.8246 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)V77.CB) [> 3.6967 = 6.1612 < 8.0096] w=0.7952 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)V68.CB) [> 3.9438 = 6.5730 < 8.5449] w=0.7860 to align
# Constraint # added constraint: constraint((T0357)G51.CA, (T0357)A78.CB) [> 3.1343 = 5.2239 < 6.7910] w=0.7481 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)G65.CA) [> 4.0532 = 6.7553 < 8.7819] w=0.7261 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)A78.CB) [> 3.7778 = 6.2963 < 8.1852] w=0.7102 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)P79.CB) [> 3.8770 = 6.4617 < 8.4002] w=0.6970 to align
# Constraint # added constraint: constraint((T0357)L69.CB, (T0357)P79.CB) [> 3.4862 = 5.8103 < 7.5534] w=0.6849 to align
# Constraint # added constraint: constraint((T0357)R52.CB, (T0357)K80.CB) [> 3.9193 = 6.5321 < 8.4917] w=0.6845 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)P79.CB) [> 3.9875 = 6.6458 < 8.6396] w=0.6270 to align
# Constraint # added constraint: constraint((T0357)R52.CB, (T0357)P79.CB) [> 3.7964 = 6.3274 < 8.2256] w=0.6259 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)I83.CB) [> 3.6043 = 6.0071 < 7.8093] w=0.6202 to align
# Constraint # added constraint: constraint((T0357)I83.CB, (T0357)V114.CB) [> 4.1112 = 6.8520 < 8.9077] w=0.6096 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)V68.CB) [> 4.1176 = 6.8626 < 8.9214] w=0.6019 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)G65.CA) [> 3.9501 = 6.5835 < 8.5586] w=0.6019 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)V120.CB) [> 3.2445 = 5.4075 < 7.0298] w=0.5931 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)V122.CB) [> 3.9098 = 6.5163 < 8.4712] w=0.5931 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)V114.CB) [> 3.0869 = 5.1449 < 6.6884] w=0.5931 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)A81.CB) [> 3.6299 = 6.0498 < 7.8647] w=0.5917 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)L72.CB) [> 4.3893 = 7.3155 < 9.5101] w=0.5914 to align
# Constraint # added constraint: constraint((T0357)A50.CB, (T0357)G76.CA) [> 2.7634 = 4.6056 < 5.9873] w=0.5841 to align
# Constraint # added constraint: constraint((T0357)G51.CA, (T0357)G76.CA) [> 4.3526 = 7.2544 < 9.4306] w=0.5819 to align
# Constraint # added constraint: constraint((T0357)V114.CB, (T0357)V129.CB) [> 4.2479 = 7.0799 < 9.2038] w=0.5804 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)L72.CB) [> 4.2058 = 7.0096 < 9.1125] w=0.5727 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)V68.CB) [> 4.6431 = 7.7386 < 10.0601] w=0.5727 to align
# Constraint # added constraint: constraint((T0357)G58.CA, (T0357)V68.CB) [> 2.6974 = 4.4957 < 5.8444] w=0.5727 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)L69.CB) [> 4.0041 = 6.6735 < 8.6756] w=0.5674 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)K85.CB) [> 4.1579 = 6.9298 < 9.0087] w=0.5608 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)L54.CB) [> 4.0262 = 6.7104 < 8.7235] w=0.5596 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)I83.CB) [> 3.9279 = 6.5464 < 8.5103] w=0.5503 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)K80.CB) [> 3.7864 = 6.3107 < 8.2039] w=0.5462 to align
# Constraint # added constraint: constraint((T0357)A50.CB, (T0357)A78.CB) [> 4.0313 = 6.7188 < 8.7344] w=0.5451 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)I82.CB) [> 3.7589 = 6.2648 < 8.1443] w=0.5414 to align
# Constraint # added constraint: constraint((T0357)G94.CA, (T0357)V103.CB) [> 3.7038 = 6.1731 < 8.0250] w=0.5185 to align
# Constraint # added constraint: constraint((T0357)A14.CB, (T0357)F56.CB) [> 4.1417 = 6.9028 < 8.9737] w=0.4955 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)A81.CB) [> 4.1046 = 6.8411 < 8.8934] w=0.4876 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)L69.CB) [> 2.8961 = 4.8268 < 6.2749] w=0.4862 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)L72.CB) [> 3.7401 = 6.2335 < 8.1036] w=0.4862 to align
# Constraint # added constraint: constraint((T0357)G58.CA, (T0357)N84.CB) [> 4.3201 = 7.2002 < 9.3603] w=0.4837 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)V55.CB) [> 3.7084 = 6.1807 < 8.0349] w=0.4660 to align
# Constraint # added constraint: constraint((T0357)V120.CB, (T0357)V129.CB) [> 3.2927 = 5.4879 < 7.1343] w=0.4647 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)I53.CB) [> 3.3046 = 5.5076 < 7.1599] w=0.4561 to align
# Constraint # added constraint: constraint((T0357)G94.CA, (T0357)F111.CB) [> 3.3534 = 5.5890 < 7.2658] w=0.4517 to align
# Constraint # added constraint: constraint((T0357)G94.CA, (T0357)R106.CB) [> 2.7328 = 4.5547 < 5.9212] w=0.4517 to align
# Constraint # added constraint: constraint((T0357)L72.CB, (T0357)I82.CB) [> 3.9178 = 6.5297 < 8.4886] w=0.4384 to align
# Constraint # added constraint: constraint((T0357)V121.CB, (T0357)E130.CB) [> 3.5741 = 5.9568 < 7.7438] w=0.4330 to align
# Constraint # added constraint: constraint((T0357)E17.CB, (T0357)L54.CB) [> 3.7390 = 6.2316 < 8.1011] w=0.4317 to align
# Constraint # added constraint: constraint((T0357)I83.CB, (T0357)V103.CB) [> 3.0257 = 5.0429 < 6.5558] w=0.4241 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)L72.CB) [> 3.8319 = 6.3865 < 8.3024] w=0.4163 to align
# Constraint # added constraint: constraint((T0357)G58.CA, (T0357)K85.CB) [> 3.4736 = 5.7894 < 7.5262] w=0.4138 to align
# Constraint # added constraint: constraint((T0357)L19.CB, (T0357)V55.CB) [> 3.3788 = 5.6314 < 7.3208] w=0.4023 to align
# Constraint # added constraint: constraint((T0357)L19.CB, (T0357)L54.CB) [> 3.7656 = 6.2760 < 8.1588] w=0.4023 to align
# Constraint # added constraint: constraint((T0357)L69.CB, (T0357)I100.CB) [> 3.8387 = 6.3978 < 8.3171] w=0.3965 to align
# Constraint # added constraint: constraint((T0357)E17.CB, (T0357)I53.CB) [> 4.2987 = 7.1646 < 9.3140] w=0.3933 to align
# Constraint # added constraint: constraint((T0357)A8.CB, (T0357)A18.CB) [> 3.8688 = 6.4480 < 8.3824] w=0.3876 to align
# Constraint # added constraint: constraint((T0357)S48.CB, (T0357)G76.CA) [> 4.1437 = 6.9062 < 8.9781] w=0.3870 to align
# Constraint # added constraint: constraint((T0357)A92.CB, (T0357)F111.CB) [> 3.8531 = 6.4219 < 8.3485] w=0.3818 to align
# Constraint # added constraint: constraint((T0357)A92.CB, (T0357)V114.CB) [> 3.0379 = 5.0631 < 6.5820] w=0.3818 to align
# Constraint # added constraint: constraint((T0357)G59.CA, (T0357)V68.CB) [> 4.6084 = 7.6807 < 9.9850] w=0.3815 to align
# Constraint # added constraint: constraint((T0357)R73.CB, (T0357)I82.CB) [> 4.4702 = 7.4504 < 9.6855] w=0.3798 to align
# Constraint # added constraint: constraint((T0357)V20.CB, (T0357)E47.CB) [> 4.1392 = 6.8987 < 8.9683] w=0.3798 to align
# Constraint # added constraint: constraint((T0357)A14.CB, (T0357)P57.CB) [> 3.4016 = 5.6694 < 7.3702] w=0.3798 to align
# Constraint # added constraint: constraint((T0357)R13.CB, (T0357)G59.CA) [> 3.3380 = 5.5634 < 7.2325] w=0.3798 to align
# Constraint # added constraint: constraint((T0357)R7.CB, (T0357)A18.CB) [> 4.6675 = 7.7791 < 10.1129] w=0.3778 to align
# Constraint # added constraint: constraint((T0357)V120.CB, (T0357)E130.CB) [> 4.1932 = 6.9886 < 9.0852] w=0.3751 to align
# Constraint # added constraint: constraint((T0357)G51.CA, (T0357)V77.CB) [> 3.7777 = 6.2962 < 8.1851] w=0.3747 to align
# Constraint # added constraint: constraint((T0357)R7.CB, (T0357)E17.CB) [> 3.3163 = 5.5272 < 7.1854] w=0.3739 to align
# Constraint # added constraint: constraint((T0357)E15.CB, (T0357)F56.CB) [> 3.5738 = 5.9564 < 7.7433] w=0.3680 to align
# Constraint # added constraint: constraint((T0357)A8.CB, (T0357)E17.CB) [> 4.0332 = 6.7220 < 8.7386] w=0.3621 to align
# Constraint # added constraint: constraint((T0357)P79.CB, (T0357)I100.CB) [> 4.1033 = 6.8389 < 8.8906] w=0.3599 to align
# Constraint # added constraint: constraint((T0357)K80.CB, (T0357)P101.CB) [> 4.3473 = 7.2455 < 9.4191] w=0.3599 to align
# Constraint # added constraint: constraint((T0357)A81.CB, (T0357)I100.CB) [> 3.9577 = 6.5961 < 8.5750] w=0.3599 to align
# Constraint # added constraint: constraint((T0357)A81.CB, (T0357)P101.CB) [> 3.2494 = 5.4157 < 7.0404] w=0.3599 to align
# Constraint # added constraint: constraint((T0357)A81.CB, (T0357)L102.CB) [> 3.8761 = 6.4602 < 8.3983] w=0.3599 to align
# Constraint # added constraint: constraint((T0357)A81.CB, (T0357)V103.CB) [> 3.6877 = 6.1462 < 7.9901] w=0.3599 to align
# Constraint # added constraint: constraint((T0357)I82.CB, (T0357)L102.CB) [> 3.2053 = 5.3422 < 6.9449] w=0.3599 to align
# Constraint # added constraint: constraint((T0357)I82.CB, (T0357)V103.CB) [> 3.9007 = 6.5012 < 8.4515] w=0.3599 to align
# Constraint # added constraint: constraint((T0357)I83.CB, (T0357)L102.CB) [> 4.3461 = 7.2435 < 9.4165] w=0.3599 to align
# Constraint # added constraint: constraint((T0357)N84.CB, (T0357)V105.CB) [> 4.1596 = 6.9327 < 9.0125] w=0.3599 to align
# Constraint # added constraint: constraint((T0357)N84.CB, (T0357)V103.CB) [> 4.2477 = 7.0796 < 9.2034] w=0.3564 to align
# Constraint # added constraint: constraint((T0357)I82.CB, (T0357)A92.CB) [> 2.7119 = 4.5198 < 5.8758] w=0.3553 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)P79.CB) [> 3.0953 = 5.1589 < 6.7066] w=0.3486 to align
# Constraint # added constraint: constraint((T0357)G51.CA, (T0357)P79.CB) [> 4.2651 = 7.1086 < 9.2411] w=0.3483 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)K85.CB) [> 3.7627 = 6.2713 < 8.1526] w=0.3475 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)I82.CB) [> 4.1024 = 6.8373 < 8.8885] w=0.3475 to align
# Constraint # added constraint: constraint((T0357)Y24.CB, (T0357)P57.CB) [> 4.0784 = 6.7974 < 8.8366] w=0.3430 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)F56.CB) [> 3.4422 = 5.7369 < 7.4580] w=0.3430 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)P57.CB) [> 3.6902 = 6.1503 < 7.9954] w=0.3430 to align
# Constraint # added constraint: constraint((T0357)V49.CB, (T0357)G76.CA) [> 3.3815 = 5.6359 < 7.3266] w=0.3413 to align
# Constraint # added constraint: constraint((T0357)G61.CA, (T0357)N84.CB) [> 3.8533 = 6.4221 < 8.3487] w=0.3410 to align
# Constraint # added constraint: constraint((T0357)K60.CB, (T0357)N84.CB) [> 3.7480 = 6.2466 < 8.1206] w=0.3410 to align
# Constraint # added constraint: constraint((T0357)V103.CB, (T0357)V122.CB) [> 4.0619 = 6.7698 < 8.8007] w=0.3389 to align
# Constraint # added constraint: constraint((T0357)I82.CB, (T0357)I91.CB) [> 3.5273 = 5.8788 < 7.6425] w=0.3384 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)I83.CB) [> 3.8831 = 6.4718 < 8.4133] w=0.3370 to align
# Constraint # added constraint: constraint((T0357)G51.CA, (T0357)K80.CB) [> 3.1597 = 5.2662 < 6.8461] w=0.3370 to align
# Constraint # added constraint: constraint((T0357)E17.CB, (T0357)R52.CB) [> 3.2401 = 5.4002 < 7.0202] w=0.3295 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)R52.CB) [> 4.1937 = 6.9896 < 9.0865] w=0.3295 to align
# Constraint # added constraint: constraint((T0357)L19.CB, (T0357)I53.CB) [> 4.1209 = 6.8682 < 8.9286] w=0.3286 to align
# Constraint # added constraint: constraint((T0357)K85.CB, (T0357)F110.CB) [> 3.9837 = 6.6396 < 8.6314] w=0.3221 to align
# Constraint # added constraint: constraint((T0357)A92.CB, (T0357)K115.CB) [> 3.4395 = 5.7325 < 7.4523] w=0.3175 to align
# Constraint # added constraint: constraint((T0357)V77.CB, (T0357)I100.CB) [> 4.2710 = 7.1183 < 9.2538] w=0.3115 to align
# Constraint # added constraint: constraint((T0357)I82.CB, (T0357)A95.CB) [> 4.3131 = 7.1885 < 9.3451] w=0.3062 to align
# Constraint # added constraint: constraint((T0357)G16.CA, (T0357)F56.CB) [> 2.9252 = 4.8753 < 6.3379] w=0.3042 to align
# Constraint # added constraint: constraint((T0357)G16.CA, (T0357)V55.CB) [> 3.6258 = 6.0431 < 7.8560] w=0.3042 to align
# Constraint # added constraint: constraint((T0357)G16.CA, (T0357)L54.CB) [> 3.6517 = 6.0862 < 7.9120] w=0.3042 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)N84.CB) [> 2.9476 = 4.9126 < 6.3864] w=0.2959 to align
# Constraint # added constraint: constraint((T0357)I83.CB, (T0357)V105.CB) [> 3.9443 = 6.5738 < 8.5459] w=0.2957 to align
# Constraint # added constraint: constraint((T0357)N84.CB, (T0357)L102.CB) [> 3.9181 = 6.5301 < 8.4892] w=0.2922 to align
# Constraint # added constraint: constraint((T0357)N84.CB, (T0357)E104.CB) [> 3.6490 = 6.0817 < 7.9062] w=0.2922 to align
# Constraint # added constraint: constraint((T0357)K85.CB, (T0357)V105.CB) [> 3.3211 = 5.5352 < 7.1957] w=0.2922 to align
# Constraint # added constraint: constraint((T0357)A81.CB, (T0357)A92.CB) [> 3.3266 = 5.5443 < 7.2076] w=0.2911 to align
# Constraint # added constraint: constraint((T0357)K80.CB, (T0357)V122.CB) [> 4.0956 = 6.8260 < 8.8738] w=0.2833 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)G59.CA) [> 4.3810 = 7.3017 < 9.4922] w=0.2788 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)I83.CB) [> 3.6690 = 6.1150 < 7.9495] w=0.2763 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)L69.CB) [> 3.7038 = 6.1729 < 8.0248] w=0.2741 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)S66.CB) [> 3.8053 = 6.3422 < 8.2449] w=0.2741 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)A92.CB) [> 3.4752 = 5.7919 < 7.5295] w=0.2722 to align
# Constraint # added constraint: constraint((T0357)V49.CB, (T0357)A78.CB) [> 3.6898 = 6.1497 < 7.9947] w=0.2722 to align
# Constraint # added constraint: constraint((T0357)G59.CA, (T0357)N84.CB) [> 3.1103 = 5.1838 < 6.7389] w=0.2699 to align
# Constraint # added constraint: constraint((T0357)A92.CB, (T0357)V103.CB) [> 4.2947 = 7.1578 < 9.3051] w=0.2667 to align
# Constraint # added constraint: constraint((T0357)V93.CB, (T0357)V103.CB) [> 3.9312 = 6.5520 < 8.5176] w=0.2645 to align
# Constraint # added constraint: constraint((T0357)S66.CB, (T0357)I100.CB) [> 3.4779 = 5.7965 < 7.5355] w=0.2576 to align
# Constraint # added constraint: constraint((T0357)L70.CB, (T0357)I100.CB) [> 3.1711 = 5.2853 < 6.8708] w=0.2576 to align
# Constraint # added constraint: constraint((T0357)P101.CB, (T0357)A124.CB) [> 2.3199 = 3.8664 < 5.0264] w=0.2576 to align
# Constraint # added constraint: constraint((T0357)V103.CB, (T0357)A124.CB) [> 4.2256 = 7.0427 < 9.1555] w=0.2576 to align
# Constraint # added constraint: constraint((T0357)V103.CB, (T0357)G127.CA) [> 3.3542 = 5.5904 < 7.2675] w=0.2576 to align
# Constraint # added constraint: constraint((T0357)V103.CB, (T0357)V129.CB) [> 4.2881 = 7.1468 < 9.2908] w=0.2576 to align
# Constraint # added constraint: constraint((T0357)V105.CB, (T0357)G127.CA) [> 4.7531 = 7.9218 < 10.2983] w=0.2576 to align
# Constraint # added constraint: constraint((T0357)L28.CB, (T0357)L54.CB) [> 4.3301 = 7.2168 < 9.3819] w=0.2571 to align
# Constraint # added constraint: constraint((T0357)S26.CB, (T0357)P57.CB) [> 3.2165 = 5.3608 < 6.9690] w=0.2571 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)V68.CB) [> 3.5303 = 5.8838 < 7.6490] w=0.2571 to align
# Constraint # added constraint: constraint((T0357)L19.CB, (T0357)L28.CB) [> 3.6497 = 6.0828 < 7.9076] w=0.2571 to align
# Constraint # added constraint: constraint((T0357)I83.CB, (T0357)F110.CB) [> 3.8351 = 6.3919 < 8.3094] w=0.2532 to align
# Constraint # added constraint: constraint((T0357)A81.CB, (T0357)F110.CB) [> 3.8147 = 6.3579 < 8.2653] w=0.2532 to align
# Constraint # added constraint: constraint((T0357)A8.CB, (T0357)L54.CB) [> 4.4464 = 7.4106 < 9.6338] w=0.2523 to align
# Constraint # added constraint: constraint((T0357)R13.CB, (T0357)K60.CB) [> 4.6627 = 7.7712 < 10.1026] w=0.2523 to align
# Constraint # added constraint: constraint((T0357)R13.CB, (T0357)V64.CB) [> 4.0126 = 6.6876 < 8.6939] w=0.2523 to align
# Constraint # added constraint: constraint((T0357)A14.CB, (T0357)G59.CA) [> 4.4914 = 7.4857 < 9.7314] w=0.2523 to align
# Constraint # added constraint: constraint((T0357)A14.CB, (T0357)V68.CB) [> 3.3772 = 5.6287 < 7.3173] w=0.2523 to align
# Constraint # added constraint: constraint((T0357)E15.CB, (T0357)P57.CB) [> 2.9350 = 4.8916 < 6.3591] w=0.2523 to align
# Constraint # added constraint: constraint((T0357)T21.CB, (T0357)K45.CB) [> 2.9237 = 4.8729 < 6.3348] w=0.2523 to align
# Constraint # added constraint: constraint((T0357)T21.CB, (T0357)E47.CB) [> 3.4148 = 5.6914 < 7.3988] w=0.2523 to align
# Constraint # added constraint: constraint((T0357)R7.CB, (T0357)G16.CA) [> 4.0931 = 6.8218 < 8.8684] w=0.2464 to align
# Constraint # added constraint: constraint((T0357)V38.CB, (T0357)V49.CB) [> 3.9148 = 6.5247 < 8.4821] w=0.2435 to align
# Constraint # added constraint: constraint((T0357)L69.CB, (T0357)A96.CB) [> 3.9562 = 6.5936 < 8.5717] w=0.2416 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)A96.CB) [> 4.4619 = 7.4365 < 9.6675] w=0.2416 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)A95.CB) [> 4.0463 = 6.7438 < 8.7670] w=0.2394 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)A96.CB) [> 4.1830 = 6.9717 < 9.0632] w=0.2394 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)M97.CB) [> 4.1681 = 6.9469 < 9.0309] w=0.2394 to align
# Constraint # added constraint: constraint((T0357)M97.CB, (T0357)V122.CB) [> 4.2037 = 7.0062 < 9.1080] w=0.2359 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)A95.CB) [> 3.5554 = 5.9256 < 7.7033] w=0.2359 to align
# Constraint # added constraint: constraint((T0357)A92.CB, (T0357)L102.CB) [> 3.4763 = 5.7938 < 7.5319] w=0.2299 to align
# Constraint # added constraint: constraint((T0357)K80.CB, (T0357)A96.CB) [> 4.0482 = 6.7470 < 8.7711] w=0.2260 to align
# Constraint # added constraint: constraint((T0357)I82.CB, (T0357)A96.CB) [> 2.8182 = 4.6969 < 6.1060] w=0.2203 to align
# Constraint # added constraint: constraint((T0357)G94.CA, (T0357)V122.CB) [> 4.4672 = 7.4453 < 9.6788] w=0.2191 to align
# Constraint # added constraint: constraint((T0357)K85.CB, (T0357)E104.CB) [> 4.2975 = 7.1625 < 9.3113] w=0.2177 to align
# Constraint # added constraint: constraint((T0357)T87.CB, (T0357)E104.CB) [> 4.0511 = 6.7518 < 8.7773] w=0.2177 to align
# Constraint # added constraint: constraint((T0357)I83.CB, (T0357)V122.CB) [> 4.3174 = 7.1956 < 9.3543] w=0.2142 to align
# Constraint # added constraint: constraint((T0357)A81.CB, (T0357)V122.CB) [> 2.8794 = 4.7990 < 6.2387] w=0.2142 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)N84.CB) [> 4.3552 = 7.2587 < 9.4363] w=0.2135 to align
# Constraint # added constraint: constraint((T0357)G59.CA, (T0357)I83.CB) [> 4.1235 = 6.8726 < 8.9343] w=0.2112 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)I91.CB) [> 3.3387 = 5.5645 < 7.2339] w=0.2080 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)I91.CB) [> 4.2131 = 7.0218 < 9.1283] w=0.2080 to align
# Constraint # added constraint: constraint((T0357)G59.CA, (T0357)V93.CB) [> 3.6577 = 6.0962 < 7.9251] w=0.2080 to align
# Constraint # added constraint: constraint((T0357)G61.CA, (T0357)G94.CA) [> 3.2934 = 5.4890 < 7.1356] w=0.2080 to align
# Constraint # added constraint: constraint((T0357)S62.CB, (T0357)G94.CA) [> 3.3497 = 5.5828 < 7.2576] w=0.2080 to align
# Constraint # added constraint: constraint((T0357)S62.CB, (T0357)A95.CB) [> 3.6313 = 6.0521 < 7.8677] w=0.2080 to align
# Constraint # added constraint: constraint((T0357)R119.CB, (T0357)V129.CB) [> 4.1641 = 6.9401 < 9.0222] w=0.2072 to align
# Constraint # added constraint: constraint((T0357)D118.CB, (T0357)V129.CB) [> 3.3003 = 5.5005 < 7.1506] w=0.2072 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)V120.CB) [> 4.2031 = 7.0052 < 9.1067] w=0.2072 to align
# Constraint # added constraint: constraint((T0357)E47.CB, (T0357)N75.CB) [> 3.8988 = 6.4980 < 8.4473] w=0.2072 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)I82.CB) [> 3.5633 = 5.9389 < 7.7206] w=0.2064 to align
# Constraint # added constraint: constraint((T0357)I82.CB, (T0357)P101.CB) [> 4.3348 = 7.2246 < 9.3920] w=0.2064 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)G94.CA) [> 4.4539 = 7.4232 < 9.6502] w=0.2058 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)V93.CB) [> 4.5113 = 7.5189 < 9.7745] w=0.2058 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)K80.CB) [> 4.0915 = 6.8193 < 8.8650] w=0.2052 to align
# Constraint # added constraint: constraint((T0357)L69.CB, (T0357)A81.CB) [> 4.1886 = 6.9811 < 9.0754] w=0.2044 to align
# Constraint # added constraint: constraint((T0357)A81.CB, (T0357)M97.CB) [> 3.7418 = 6.2363 < 8.1072] w=0.2040 to align
# Constraint # added constraint: constraint((T0357)A81.CB, (T0357)I91.CB) [> 4.0907 = 6.8179 < 8.8633] w=0.2040 to align
# Constraint # added constraint: constraint((T0357)K80.CB, (T0357)I90.CB) [> 3.4505 = 5.7508 < 7.4761] w=0.2040 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)I83.CB) [> 4.4917 = 7.4861 < 9.7319] w=0.2040 to align
# Constraint # added constraint: constraint((T0357)A81.CB, (T0357)A96.CB) [> 4.1561 = 6.9268 < 9.0048] w=0.2032 to align
# Constraint # added constraint: constraint((T0357)I9.CB, (T0357)A18.CB) [> 3.1002 = 5.1669 < 6.7170] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)I9.CB, (T0357)L19.CB) [> 4.5305 = 7.5508 < 9.8161] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)T10.CB, (T0357)L19.CB) [> 4.5457 = 7.5762 < 9.8490] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)L28.CB, (T0357)K74.CB) [> 3.7354 = 6.2257 < 8.0934] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)G29.CA, (T0357)K74.CB) [> 4.4258 = 7.3764 < 9.5893] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)G30.CA, (T0357)K74.CB) [> 3.0781 = 5.1301 < 6.6691] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)G30.CA, (T0357)N75.CB) [> 3.9558 = 6.5930 < 8.5709] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)G30.CA, (T0357)G76.CA) [> 4.0737 = 6.7894 < 8.8263] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)I31.CB, (T0357)G76.CA) [> 2.0708 = 3.4513 < 4.4867] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)D32.CB, (T0357)G76.CA) [> 3.6287 = 6.0478 < 7.8621] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)K33.CB, (T0357)R73.CB) [> 3.2925 = 5.4876 < 7.1338] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)K33.CB, (T0357)G76.CA) [> 3.1129 = 5.1881 < 6.7445] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)E34.CB, (T0357)G51.CA) [> 3.7830 = 6.3050 < 8.1965] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)E34.CB, (T0357)R52.CB) [> 4.3536 = 7.2560 < 9.4328] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)T35.CB, (T0357)G51.CA) [> 4.4024 = 7.3374 < 9.5386] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)T35.CB, (T0357)G76.CA) [> 3.1539 = 5.2566 < 6.8335] w=0.2030 to align
# Constraint # added constraint: constraint((T0357)D118.CB, (T0357)E133.CB) [> 3.8163 = 6.3605 < 8.2687] w=0.2026 to align
# Constraint # added constraint: constraint((T0357)V114.CB, (T0357)L131.CB) [> 4.4026 = 7.3376 < 9.5388] w=0.2016 to align
# Constraint # added constraint: constraint((T0357)L69.CB, (T0357)A92.CB) [> 4.0257 = 6.7095 < 8.7223] w=0.2009 to align
# Constraint # added constraint: constraint((T0357)T35.CB, (T0357)A50.CB) [> 3.0677 = 5.1128 < 6.6466] w=0.1995 to align
# Constraint # added constraint: constraint((T0357)Y24.CB, (T0357)K60.CB) [> 4.6174 = 7.6957 < 10.0044] w=0.1930 to align
# Constraint # added constraint: constraint((T0357)Y24.CB, (T0357)V64.CB) [> 3.2547 = 5.4244 < 7.0518] w=0.1930 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)G58.CA) [> 3.6052 = 6.0087 < 7.8113] w=0.1930 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)V64.CB) [> 4.5815 = 7.6358 < 9.9266] w=0.1930 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)Y67.CB) [> 4.6245 = 7.7074 < 10.0197] w=0.1930 to align
# Constraint # added constraint: constraint((T0357)S26.CB, (T0357)F56.CB) [> 4.2208 = 7.0347 < 9.1451] w=0.1930 to align
# Constraint # added constraint: constraint((T0357)F27.CB, (T0357)L54.CB) [> 4.0377 = 6.7295 < 8.7483] w=0.1930 to align
# Constraint # added constraint: constraint((T0357)F27.CB, (T0357)V55.CB) [> 4.2239 = 7.0398 < 9.1517] w=0.1930 to align
# Constraint # added constraint: constraint((T0357)F27.CB, (T0357)F56.CB) [> 2.5387 = 4.2311 < 5.5004] w=0.1930 to align
# Constraint # added constraint: constraint((T0357)F27.CB, (T0357)P57.CB) [> 4.5058 = 7.5097 < 9.7626] w=0.1930 to align
# Constraint # added constraint: constraint((T0357)L28.CB, (T0357)V55.CB) [> 2.8896 = 4.8161 < 6.2609] w=0.1930 to align
# Constraint # added constraint: constraint((T0357)L28.CB, (T0357)F56.CB) [> 4.6665 = 7.7775 < 10.1107] w=0.1930 to align
# Constraint # added constraint: constraint((T0357)C6.CB, (T0357)E17.CB) [> 4.5343 = 7.5572 < 9.8243] w=0.1903 to align
# Constraint # added constraint: constraint((T0357)G29.CA, (T0357)E43.CB) [> 4.7388 = 7.8980 < 10.2674] w=0.1896 to align
# Constraint # added constraint: constraint((T0357)L19.CB, (T0357)V49.CB) [> 3.3588 = 5.5979 < 7.2773] w=0.1894 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)V49.CB) [> 4.5454 = 7.5757 < 9.8484] w=0.1894 to align
# Constraint # added constraint: constraint((T0357)G58.CA, (T0357)L69.CB) [> 4.7961 = 7.9936 < 10.3916] w=0.1885 to align
# Constraint # added constraint: constraint((T0357)E17.CB, (T0357)F56.CB) [> 4.4454 = 7.4089 < 9.6316] w=0.1885 to align
# Constraint # added constraint: constraint((T0357)E17.CB, (T0357)V55.CB) [> 3.1584 = 5.2641 < 6.8433] w=0.1885 to align
# Constraint # added constraint: constraint((T0357)G16.CA, (T0357)P57.CB) [> 4.2107 = 7.0179 < 9.1233] w=0.1885 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)V68.CB) [> 3.9390 = 6.5651 < 8.5346] w=0.1856 to align
# Constraint # added constraint: constraint((T0357)A8.CB, (T0357)V64.CB) [> 3.1824 = 5.3039 < 6.8951] w=0.1736 to align
# Constraint # added constraint: constraint((T0357)G16.CA, (T0357)V64.CB) [> 3.6607 = 6.1012 < 7.9315] w=0.1736 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)V68.CB) [> 2.6683 = 4.4473 < 5.7814] w=0.1736 to align
# Constraint # added constraint: constraint((T0357)V20.CB, (T0357)N71.CB) [> 3.7487 = 6.2478 < 8.1221] w=0.1736 to align
# Constraint # added constraint: constraint((T0357)V20.CB, (T0357)L72.CB) [> 3.6277 = 6.0462 < 7.8601] w=0.1736 to align
# Constraint # added constraint: constraint((T0357)K22.CB, (T0357)L72.CB) [> 3.8617 = 6.4361 < 8.3670] w=0.1736 to align
# Constraint # added constraint: constraint((T0357)A95.CB, (T0357)V122.CB) [> 3.8043 = 6.3405 < 8.2426] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)G58.CA, (T0357)E99.CB) [> 2.4415 = 4.0692 < 5.2899] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)G58.CA, (T0357)A98.CB) [> 3.4857 = 5.8095 < 7.5524] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)A98.CB) [> 3.8993 = 6.4989 < 8.4486] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)A98.CB) [> 2.3168 = 3.8613 < 5.0197] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)A98.CB) [> 4.2448 = 7.0746 < 9.1970] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)M97.CB) [> 2.8370 = 4.7283 < 6.1468] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)A98.CB) [> 4.7782 = 7.9637 < 10.3528] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)M97.CB) [> 4.3503 = 7.2505 < 9.4256] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)A96.CB) [> 2.7441 = 4.5735 < 5.9456] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)M97.CB) [> 3.5996 = 5.9993 < 7.7991] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)A96.CB) [> 4.3659 = 7.2766 < 9.4595] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)E126.CB, (T0357)H136.CB) [> 3.6248 = 6.0414 < 7.8538] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)D125.CB, (T0357)H136.CB) [> 3.5172 = 5.8620 < 7.6206] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)V114.CB, (T0357)I132.CB) [> 4.3346 = 7.2244 < 9.3917] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)V105.CB, (T0357)L134.CB) [> 2.0449 = 3.4081 < 4.4306] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)V105.CB, (T0357)I132.CB) [> 4.2698 = 7.1164 < 9.2513] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)E104.CB, (T0357)L134.CB) [> 3.5596 = 5.9327 < 7.7125] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)V103.CB, (T0357)L134.CB) [> 2.3024 = 3.8374 < 4.9886] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)M97.CB, (T0357)V129.CB) [> 4.2494 = 7.0824 < 9.2071] w=0.1717 to align
# Constraint # added constraint: constraint((T0357)V120.CB, (T0357)L131.CB) [> 3.6969 = 6.1615 < 8.0100] w=0.1616 to align
# Constraint # added constraint: constraint((T0357)G59.CA, (T0357)I90.CB) [> 4.5224 = 7.5374 < 9.7986] w=0.1558 to align
# Constraint # added constraint: constraint((T0357)G59.CA, (T0357)I91.CB) [> 2.8393 = 4.7321 < 6.1517] w=0.1558 to align
# Constraint # added constraint: constraint((T0357)K60.CB, (T0357)I91.CB) [> 4.0660 = 6.7767 < 8.8097] w=0.1558 to align
# Constraint # added constraint: constraint((T0357)S66.CB, (T0357)A95.CB) [> 3.1919 = 5.3198 < 6.9158] w=0.1558 to align
# Constraint # added constraint: constraint((T0357)S66.CB, (T0357)A98.CB) [> 3.2373 = 5.3956 < 7.0142] w=0.1558 to align
# Constraint # added constraint: constraint((T0357)L70.CB, (T0357)E99.CB) [> 3.3842 = 5.6403 < 7.3323] w=0.1558 to align
# Constraint # added constraint: constraint((T0357)G65.CA, (T0357)A96.CB) [> 3.7220 = 6.2032 < 8.0642] w=0.1553 to align
# Constraint # added constraint: constraint((T0357)I83.CB, (T0357)E104.CB) [> 3.9538 = 6.5896 < 8.5665] w=0.1535 to align
# Constraint # added constraint: constraint((T0357)I83.CB, (T0357)A92.CB) [> 3.8342 = 6.3903 < 8.3074] w=0.1513 to align
# Constraint # added constraint: constraint((T0357)V121.CB, (T0357)L131.CB) [> 3.1475 = 5.2459 < 6.8197] w=0.1507 to align
# Constraint # added constraint: constraint((T0357)K80.CB, (T0357)A95.CB) [> 4.1822 = 6.9703 < 9.0614] w=0.1504 to align
# Constraint # added constraint: constraint((T0357)A81.CB, (T0357)G94.CA) [> 4.1154 = 6.8590 < 8.9167] w=0.1504 to align
# Constraint # added constraint: constraint((T0357)A81.CB, (T0357)A95.CB) [> 2.9548 = 4.9247 < 6.4021] w=0.1504 to align
# Constraint # added constraint: constraint((T0357)E17.CB, (T0357)G117.CA) [> 3.0397 = 5.0661 < 6.5859] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)G16.CA, (T0357)V121.CB) [> 4.3656 = 7.2759 < 9.4587] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)G16.CA, (T0357)V120.CB) [> 3.6446 = 6.0744 < 7.8967] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)G16.CA, (T0357)R119.CB) [> 3.6992 = 6.1654 < 8.0150] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)E15.CB, (T0357)V121.CB) [> 2.6394 = 4.3989 < 5.7186] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)E15.CB, (T0357)V120.CB) [> 4.3200 = 7.1999 < 9.3599] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)E15.CB, (T0357)R119.CB) [> 4.4609 = 7.4349 < 9.6654] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)E15.CB, (T0357)G51.CA) [> 4.1780 = 6.9633 < 9.0524] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)A14.CB, (T0357)V122.CB) [> 3.0862 = 5.1437 < 6.6868] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)A14.CB, (T0357)V121.CB) [> 4.1426 = 6.9043 < 8.9756] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)R13.CB, (T0357)N123.CB) [> 3.1272 = 5.2119 < 6.7755] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)K85.CB, (T0357)F111.CB) [> 2.9608 = 4.9346 < 6.4150] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)N84.CB, (T0357)F111.CB) [> 4.1048 = 6.8412 < 8.8936] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)G94.CA) [> 3.7762 = 6.2936 < 8.1817] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)K60.CB) [> 3.3661 = 5.6102 < 7.2933] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)L19.CB, (T0357)G117.CA) [> 4.2157 = 7.0261 < 9.1339] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)V120.CB) [> 3.3810 = 5.6350 < 7.3255] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)G117.CA) [> 3.0773 = 5.1289 < 6.6675] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)E17.CB, (T0357)V120.CB) [> 4.4727 = 7.4544 < 9.6908] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)E17.CB, (T0357)R119.CB) [> 3.6059 = 6.0098 < 7.8127] w=0.1500 to align
# Constraint # added constraint: constraint((T0357)A78.CB, (T0357)M97.CB) [> 4.2653 = 7.1088 < 9.2414] w=0.1484 to align
# Constraint # added constraint: constraint((T0357)P79.CB, (T0357)M97.CB) [> 3.4390 = 5.7317 < 7.4512] w=0.1484 to align
# Constraint # added constraint: constraint((T0357)R119.CB, (T0357)L131.CB) [> 4.0100 = 6.6834 < 8.6884] w=0.1437 to align
# Constraint # added constraint: constraint((T0357)D118.CB, (T0357)L131.CB) [> 2.9758 = 4.9596 < 6.4475] w=0.1437 to align
# Constraint # added constraint: constraint((T0357)A113.CB, (T0357)L131.CB) [> 4.0937 = 6.8229 < 8.8698] w=0.1437 to align
# Constraint # added constraint: constraint((T0357)G59.CA, (T0357)L69.CB) [> 4.3314 = 7.2190 < 9.3847] w=0.1422 to align
# Constraint # added constraint: constraint((T0357)G59.CA, (T0357)I82.CB) [> 3.2437 = 5.4061 < 7.0280] w=0.1422 to align
# Constraint # added constraint: constraint((T0357)R119.CB, (T0357)I132.CB) [> 4.0457 = 6.7428 < 8.7657] w=0.1421 to align
# Constraint # added constraint: constraint((T0357)G16.CA, (T0357)K85.CB) [> 4.3143 = 7.1905 < 9.3477] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)E17.CB, (T0357)N84.CB) [> 4.6102 = 7.6837 < 9.9888] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)E17.CB, (T0357)K85.CB) [> 2.6832 = 4.4719 < 5.8135] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)I82.CB) [> 2.8858 = 4.8096 < 6.2525] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)N84.CB) [> 4.2650 = 7.1083 < 9.2409] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)K85.CB) [> 4.6781 = 7.7968 < 10.1358] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)I91.CB) [> 2.9277 = 4.8795 < 6.3433] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)A92.CB) [> 4.3455 = 7.2425 < 9.4152] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)L19.CB, (T0357)I82.CB) [> 3.7659 = 6.2765 < 8.1595] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)L19.CB, (T0357)I83.CB) [> 2.9113 = 4.8521 < 6.3078] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)T10.CB, (T0357)T87.CB) [> 4.3886 = 7.3144 < 9.5087] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)A8.CB, (T0357)T89.CB) [> 4.7923 = 7.9871 < 10.3833] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)A8.CB, (T0357)T87.CB) [> 2.6253 = 4.3755 < 5.6881] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)R7.CB, (T0357)E88.CB) [> 4.3944 = 7.3239 < 9.5211] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)C6.CB, (T0357)T89.CB) [> 3.1865 = 5.3109 < 6.9041] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)C6.CB, (T0357)T87.CB) [> 3.7787 = 6.2978 < 8.1871] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)C6.CB, (T0357)I37.CB) [> 2.4757 = 4.1261 < 5.3639] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)A5.CB, (T0357)I37.CB) [> 4.3104 = 7.1840 < 9.3392] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)F4.CB, (T0357)K39.CB) [> 2.9667 = 4.9446 < 6.4279] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)F4.CB, (T0357)V38.CB) [> 4.7993 = 7.9989 < 10.3986] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)F4.CB, (T0357)I37.CB) [> 3.5248 = 5.8747 < 7.6371] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)K80.CB, (T0357)A92.CB) [> 4.4040 = 7.3401 < 9.5421] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)A78.CB, (T0357)A98.CB) [> 3.7839 = 6.3065 < 8.1984] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)G76.CA, (T0357)E99.CB) [> 3.9141 = 6.5235 < 8.4805] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)K39.CB, (T0357)I90.CB) [> 4.2802 = 7.1336 < 9.2737] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)V38.CB, (T0357)E104.CB) [> 4.4783 = 7.4639 < 9.7030] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)V38.CB, (T0357)I90.CB) [> 3.0005 = 5.0009 < 6.5011] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)V38.CB, (T0357)T89.CB) [> 4.7262 = 7.8770 < 10.2401] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)I37.CB, (T0357)I90.CB) [> 3.7865 = 6.3109 < 8.2042] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)I37.CB, (T0357)T89.CB) [> 2.6630 = 4.4382 < 5.7697] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)L28.CB, (T0357)A81.CB) [> 4.2432 = 7.0720 < 9.1936] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)F27.CB, (T0357)V103.CB) [> 3.0892 = 5.1487 < 6.6933] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)F27.CB, (T0357)M97.CB) [> 4.2453 = 7.0754 < 9.1980] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)F27.CB, (T0357)A81.CB) [> 4.6777 = 7.7962 < 10.1350] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)M97.CB) [> 4.1592 = 6.9320 < 9.0116] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)A81.CB) [> 3.8094 = 6.3490 < 8.2536] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)V20.CB, (T0357)A92.CB) [> 4.6370 = 7.7283 < 10.0468] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)V20.CB, (T0357)I82.CB) [> 3.2511 = 5.4185 < 7.0441] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)V20.CB, (T0357)A81.CB) [> 3.8687 = 6.4479 < 8.3822] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)V20.CB, (T0357)I31.CB) [> 4.0367 = 6.7279 < 8.7462] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)L19.CB, (T0357)I91.CB) [> 4.3383 = 7.2305 < 9.3996] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)L19.CB, (T0357)K85.CB) [> 3.2515 = 5.4192 < 7.0450] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)L19.CB, (T0357)N84.CB) [> 4.4555 = 7.4258 < 9.6535] w=0.1398 to align
# Constraint # added constraint: constraint((T0357)G61.CA, (T0357)A98.CB) [> 4.0981 = 6.8301 < 8.8791] w=0.1390 to align
# Constraint # added constraint: constraint((T0357)L69.CB, (T0357)A95.CB) [> 3.9737 = 6.6228 < 8.6097] w=0.1390 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)I90.CB) [> 4.0771 = 6.7951 < 8.8336] w=0.1381 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)I91.CB) [> 3.9526 = 6.5877 < 8.5640] w=0.1381 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)I91.CB) [> 4.2334 = 7.0556 < 9.1723] w=0.1381 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)V93.CB) [> 3.9241 = 6.5402 < 8.5022] w=0.1381 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)V93.CB) [> 2.8016 = 4.6693 < 6.0701] w=0.1381 to align
# Constraint # added constraint: constraint((T0357)G59.CA, (T0357)A92.CB) [> 4.3056 = 7.1761 < 9.3289] w=0.1381 to align
# Constraint # added constraint: constraint((T0357)G59.CA, (T0357)G94.CA) [> 3.0769 = 5.1281 < 6.6666] w=0.1381 to align
# Constraint # added constraint: constraint((T0357)K60.CB, (T0357)V93.CB) [> 4.4713 = 7.4521 < 9.6877] w=0.1381 to align
# Constraint # added constraint: constraint((T0357)G61.CA, (T0357)V93.CB) [> 2.8871 = 4.8119 < 6.2554] w=0.1381 to align
# Constraint # added constraint: constraint((T0357)T63.CB, (T0357)G94.CA) [> 3.3682 = 5.6136 < 7.2977] w=0.1381 to align
# Constraint # added constraint: constraint((T0357)T63.CB, (T0357)A95.CB) [> 2.4454 = 4.0757 < 5.2984] w=0.1381 to align
# Constraint # added constraint: constraint((T0357)V64.CB, (T0357)I90.CB) [> 3.9661 = 6.6102 < 8.5933] w=0.1381 to align
# Constraint # added constraint: constraint((T0357)V64.CB, (T0357)A92.CB) [> 3.6755 = 6.1259 < 7.9637] w=0.1381 to align
# Constraint # added constraint: constraint((T0357)V64.CB, (T0357)A96.CB) [> 3.1201 = 5.2001 < 6.7602] w=0.1381 to align
# Constraint # added constraint: constraint((T0357)I91.CB, (T0357)V120.CB) [> 4.5069 = 7.5115 < 9.7649] w=0.1381 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)A92.CB) [> 4.2304 = 7.0506 < 9.1658] w=0.1376 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)A92.CB) [> 2.2347 = 3.7244 < 4.8418] w=0.1376 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)A95.CB) [> 3.8533 = 6.4222 < 8.3488] w=0.1376 to align
# Constraint # added constraint: constraint((T0357)I82.CB, (T0357)V105.CB) [> 3.8841 = 6.4735 < 8.4155] w=0.1376 to align
# Constraint # added constraint: constraint((T0357)A96.CB, (T0357)V105.CB) [> 4.0947 = 6.8245 < 8.8719] w=0.1367 to align
# Constraint # added constraint: constraint((T0357)A8.CB, (T0357)L19.CB) [> 2.6298 = 4.3830 < 5.6979] w=0.1353 to align
# Constraint # added constraint: constraint((T0357)A8.CB, (T0357)T21.CB) [> 4.7288 = 7.8813 < 10.2457] w=0.1353 to align
# Constraint # added constraint: constraint((T0357)I31.CB, (T0357)A50.CB) [> 3.3781 = 5.6302 < 7.3193] w=0.1353 to align
# Constraint # added constraint: constraint((T0357)K33.CB, (T0357)P79.CB) [> 4.7581 = 7.9302 < 10.3093] w=0.1353 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)V103.CB) [> 4.7300 = 7.8833 < 10.2483] w=0.1353 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)A81.CB) [> 2.9255 = 4.8758 < 6.3386] w=0.1353 to align
# Constraint # added constraint: constraint((T0357)G58.CA, (T0357)I83.CB) [> 3.7984 = 6.3306 < 8.2298] w=0.1353 to align
# Constraint # added constraint: constraint((T0357)G65.CA, (T0357)A92.CB) [> 4.4534 = 7.4223 < 9.6489] w=0.1341 to align
# Constraint # added constraint: constraint((T0357)S62.CB, (T0357)I91.CB) [> 3.6818 = 6.1364 < 7.9773] w=0.1341 to align
# Constraint # added constraint: constraint((T0357)I83.CB, (T0357)M97.CB) [> 2.8574 = 4.7624 < 6.1911] w=0.1332 to align
# Constraint # added constraint: constraint((T0357)I83.CB, (T0357)A96.CB) [> 4.4631 = 7.4385 < 9.6700] w=0.1332 to align
# Constraint # added constraint: constraint((T0357)I83.CB, (T0357)A95.CB) [> 4.4287 = 7.3811 < 9.5955] w=0.1332 to align
# Constraint # added constraint: constraint((T0357)I82.CB, (T0357)M97.CB) [> 4.6405 = 7.7341 < 10.0543] w=0.1332 to align
# Constraint # added constraint: constraint((T0357)S66.CB, (T0357)A92.CB) [> 2.9049 = 4.8414 < 6.2938] w=0.1332 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)V103.CB) [> 3.2798 = 5.4663 < 7.1061] w=0.1332 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)V103.CB) [> 3.8384 = 6.3974 < 8.3166] w=0.1332 to align
# Constraint # added constraint: constraint((T0357)K86.CB, (T0357)A98.CB) [> 4.2494 = 7.0823 < 9.2069] w=0.1332 to align
# Constraint # added constraint: constraint((T0357)G36.CA, (T0357)G76.CA) [> 3.3016 = 5.5027 < 7.1535] w=0.1319 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)V93.CB) [> 3.7322 = 6.2203 < 8.0864] w=0.1319 to align
# Constraint # added constraint: constraint((T0357)C6.CB, (T0357)V20.CB) [> 3.9629 = 6.6048 < 8.5863] w=0.1305 to align
# Constraint # added constraint: constraint((T0357)C6.CB, (T0357)A18.CB) [> 3.1665 = 5.2776 < 6.8609] w=0.1305 to align
# Constraint # added constraint: constraint((T0357)L19.CB, (T0357)G29.CA) [> 3.6379 = 6.0631 < 7.8821] w=0.1286 to align
# Constraint # added constraint: constraint((T0357)G29.CA, (T0357)L54.CB) [> 3.4667 = 5.7779 < 7.5112] w=0.1286 to align
# Constraint # added constraint: constraint((T0357)G29.CA, (T0357)V55.CB) [> 3.7573 = 6.2622 < 8.1408] w=0.1286 to align
# Constraint # added constraint: constraint((T0357)I44.CB, (T0357)I53.CB) [> 3.2555 = 5.4257 < 7.0535] w=0.1286 to align
# Constraint # added constraint: constraint((T0357)K80.CB, (T0357)I91.CB) [> 3.8092 = 6.3486 < 8.2532] w=0.1286 to align
# Constraint # added constraint: constraint((T0357)S62.CB, (T0357)E88.CB) [> 2.6920 = 4.4866 < 5.8326] w=0.1284 to align
# Constraint # added constraint: constraint((T0357)F4.CB, (T0357)E17.CB) [> 3.5232 = 5.8720 < 7.6336] w=0.1275 to align
# Constraint # added constraint: constraint((T0357)F4.CB, (T0357)A18.CB) [> 3.3081 = 5.5135 < 7.1676] w=0.1275 to align
# Constraint # added constraint: constraint((T0357)F4.CB, (T0357)L19.CB) [> 3.8822 = 6.4704 < 8.4115] w=0.1275 to align
# Constraint # added constraint: constraint((T0357)A5.CB, (T0357)E17.CB) [> 2.2134 = 3.6889 < 4.7956] w=0.1275 to align
# Constraint # added constraint: constraint((T0357)R7.CB, (T0357)L54.CB) [> 4.5474 = 7.5790 < 9.8527] w=0.1275 to align
# Constraint # added constraint: constraint((T0357)G12.CA, (T0357)P57.CB) [> 4.0041 = 6.6736 < 8.6756] w=0.1275 to align
# Constraint # added constraint: constraint((T0357)G12.CA, (T0357)G58.CA) [> 3.8246 = 6.3744 < 8.2867] w=0.1275 to align
# Constraint # added constraint: constraint((T0357)V20.CB, (T0357)K45.CB) [> 2.9054 = 4.8424 < 6.2951] w=0.1275 to align
# Constraint # added constraint: constraint((T0357)V20.CB, (T0357)I53.CB) [> 4.6767 = 7.7945 < 10.1328] w=0.1275 to align
# Constraint # added constraint: constraint((T0357)I91.CB, (T0357)L102.CB) [> 4.1178 = 6.8630 < 8.9220] w=0.1269 to align
# Constraint # added constraint: constraint((T0357)V93.CB, (T0357)L102.CB) [> 4.5818 = 7.6363 < 9.9272] w=0.1269 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)S66.CB) [> 3.7478 = 6.2462 < 8.1201] w=0.1172 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)V38.CB) [> 3.7147 = 6.1912 < 8.0486] w=0.1157 to align
# Constraint # added constraint: constraint((T0357)Y24.CB, (T0357)T35.CB) [> 4.3233 = 7.2055 < 9.3672] w=0.1157 to align
# Constraint # added constraint: constraint((T0357)E23.CB, (T0357)T35.CB) [> 4.7035 = 7.8391 < 10.1908] w=0.1157 to align
# Constraint # added constraint: constraint((T0357)T21.CB, (T0357)T35.CB) [> 3.7397 = 6.2327 < 8.1026] w=0.1157 to align
# Constraint # added constraint: constraint((T0357)E17.CB, (T0357)V68.CB) [> 4.4351 = 7.3917 < 9.6093] w=0.1157 to align
# Constraint # added constraint: constraint((T0357)A8.CB, (T0357)V68.CB) [> 3.4304 = 5.7172 < 7.4324] w=0.1157 to align
# Constraint # added constraint: constraint((T0357)A8.CB, (T0357)Y67.CB) [> 4.0342 = 6.7236 < 8.7407] w=0.1157 to align
# Constraint # added constraint: constraint((T0357)F110.CB, (T0357)L131.CB) [> 4.3608 = 7.2679 < 9.4483] w=0.1157 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)V64.CB) [> 3.0833 = 5.1388 < 6.6805] w=0.1157 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)G65.CA) [> 4.5266 = 7.5443 < 9.8076] w=0.1157 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)I44.CB) [> 4.3992 = 7.3321 < 9.5317] w=0.1157 to align
# Constraint # added constraint: constraint((T0357)K33.CB, (T0357)I44.CB) [> 4.7736 = 7.9559 < 10.3427] w=0.1157 to align
# Constraint # added constraint: constraint((T0357)I83.CB, (T0357)V129.CB) [> 4.1494 = 6.9157 < 8.9904] w=0.1030 to align
# Constraint # added constraint: constraint((T0357)C42.CB, (T0357)Y67.CB) [> 2.7841 = 4.6401 < 6.0322] w=0.1030 to align
# Constraint # added constraint: constraint((T0357)V68.CB, (T0357)K80.CB) [> 4.1630 = 6.9384 < 9.0199] w=0.0957 to align
# Constraint # added constraint: constraint((T0357)V38.CB, (T0357)A96.CB) [> 3.9906 = 6.6510 < 8.6463] w=0.0871 to align
# Constraint # added constraint: constraint((T0357)I82.CB, (T0357)V93.CB) [> 2.6787 = 4.4645 < 5.8038] w=0.0871 to align
# Constraint # added constraint: constraint((T0357)I82.CB, (T0357)G94.CA) [> 3.6413 = 6.0688 < 7.8895] w=0.0871 to align
# Constraint # added constraint: constraint((T0357)I83.CB, (T0357)V93.CB) [> 2.9434 = 4.9056 < 6.3773] w=0.0871 to align
# Constraint # added constraint: constraint((T0357)N84.CB, (T0357)V93.CB) [> 3.5743 = 5.9571 < 7.7443] w=0.0871 to align
# Constraint # added constraint: constraint((T0357)K22.CB, (T0357)P57.CB) [> 2.7670 = 4.6116 < 5.9951] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)E23.CB, (T0357)F56.CB) [> 4.5242 = 7.5403 < 9.8024] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)E23.CB, (T0357)P57.CB) [> 2.0444 = 3.4074 < 4.4296] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)G61.CA) [> 3.2639 = 5.4398 < 7.0717] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)S26.CB, (T0357)G61.CA) [> 3.7100 = 6.1833 < 8.0382] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)S26.CB, (T0357)S62.CB) [> 4.2708 = 7.1181 < 9.2535] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)F27.CB, (T0357)G61.CA) [> 3.1045 = 5.1742 < 6.7264] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)F27.CB, (T0357)T63.CB) [> 4.6345 = 7.7242 < 10.0414] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)F27.CB, (T0357)G65.CA) [> 3.1401 = 5.2335 < 6.8036] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)L28.CB, (T0357)S62.CB) [> 3.2851 = 5.4752 < 7.1178] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)G30.CA, (T0357)G65.CA) [> 3.3096 = 5.5159 < 7.1707] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)G30.CA, (T0357)V68.CB) [> 4.0791 = 6.7986 < 8.8381] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)I31.CB, (T0357)G65.CA) [> 2.7050 = 4.5084 < 5.8609] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)I31.CB, (T0357)Y67.CB) [> 4.6939 = 7.8232 < 10.1701] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)A14.CB, (T0357)A124.CB) [> 4.2966 = 7.1609 < 9.3092] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)V20.CB, (T0357)V55.CB) [> 3.0655 = 5.1091 < 6.6419] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)V20.CB, (T0357)F56.CB) [> 4.6078 = 7.6796 < 9.9835] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)V20.CB, (T0357)G117.CA) [> 4.4501 = 7.4169 < 9.6419] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)T63.CB, (T0357)I90.CB) [> 2.7611 = 4.6018 < 5.9823] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)G65.CA, (T0357)I91.CB) [> 4.7044 = 7.8407 < 10.1929] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)S66.CB, (T0357)I91.CB) [> 4.0850 = 6.8083 < 8.8508] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)S66.CB, (T0357)G94.CA) [> 2.9458 = 4.9097 < 6.3827] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)S66.CB, (T0357)M97.CB) [> 4.6414 = 7.7357 < 10.0564] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)Y67.CB, (T0357)A98.CB) [> 3.4358 = 5.7263 < 7.4441] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)L70.CB, (T0357)P79.CB) [> 4.0162 = 6.6936 < 8.7017] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)L70.CB, (T0357)A98.CB) [> 3.2912 = 5.4854 < 7.1310] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)G76.CA, (T0357)G94.CA) [> 3.6163 = 6.0271 < 7.8352] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)A81.CB, (T0357)A124.CB) [> 3.2920 = 5.4867 < 7.1326] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)G94.CA, (T0357)A124.CB) [> 4.5636 = 7.6061 < 9.8879] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)I31.CB, (T0357)V68.CB) [> 2.9587 = 4.9312 < 6.4106] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)K33.CB, (T0357)S62.CB) [> 4.0016 = 6.6694 < 8.6702] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)T35.CB, (T0357)V64.CB) [> 3.9437 = 6.5729 < 8.5447] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)C42.CB, (T0357)L70.CB) [> 4.0518 = 6.7529 < 8.7788] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)C42.CB, (T0357)N71.CB) [> 2.1967 = 3.6611 < 4.7594] w=0.0859 to align
# Constraint # added constraint: constraint((T0357)V120.CB, (T0357)I132.CB) [> 3.9350 = 6.5583 < 8.5258] w=0.0843 to align
# Constraint # added constraint: constraint((T0357)V121.CB, (T0357)I132.CB) [> 4.6461 = 7.7435 < 10.0665] w=0.0843 to align
# Constraint # added constraint: constraint((T0357)G94.CA, (T0357)V121.CB) [> 3.5430 = 5.9050 < 7.6764] w=0.0814 to align
# Constraint # added constraint: constraint((T0357)E40.CB, (T0357)V49.CB) [> 3.6754 = 6.1256 < 7.9633] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)E40.CB, (T0357)A50.CB) [> 3.9611 = 6.6018 < 8.5823] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)E40.CB, (T0357)G59.CA) [> 2.9753 = 4.9588 < 6.4464] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)I91.CB) [> 3.2649 = 5.4415 < 7.0739] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)A92.CB) [> 3.9132 = 6.5219 < 8.4785] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)G58.CA, (T0357)I91.CB) [> 2.4726 = 4.1211 < 5.3574] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)G58.CA, (T0357)A92.CB) [> 4.7661 = 7.9435 < 10.3266] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)G59.CA, (T0357)G76.CA) [> 4.1543 = 6.9239 < 9.0011] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)R11.CB, (T0357)G36.CA) [> 4.4607 = 7.4345 < 9.6648] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)T10.CB, (T0357)G36.CA) [> 4.5083 = 7.5138 < 9.7680] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)I9.CB, (T0357)G36.CA) [> 2.5756 = 4.2926 < 5.5804] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)C6.CB, (T0357)G36.CA) [> 3.0880 = 5.1466 < 6.6906] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)A5.CB, (T0357)G36.CA) [> 3.6724 = 6.1207 < 7.9570] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)K3.CB, (T0357)V38.CB) [> 3.8449 = 6.4082 < 8.3306] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)K3.CB, (T0357)I37.CB) [> 4.5623 = 7.6038 < 9.8849] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)N84.CB, (T0357)G94.CA) [> 4.5534 = 7.5891 < 9.8658] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)A81.CB, (T0357)V93.CB) [> 3.5672 = 5.9453 < 7.7288] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)K80.CB, (T0357)V93.CB) [> 3.4492 = 5.7487 < 7.4732] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)R73.CB, (T0357)E99.CB) [> 4.5885 = 7.6475 < 9.9417] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)G59.CA, (T0357)K80.CB) [> 4.0037 = 6.6729 < 8.6748] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)G61.CA, (T0357)I91.CB) [> 3.7681 = 6.2801 < 8.1642] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)G65.CA, (T0357)A95.CB) [> 3.5131 = 5.8552 < 7.6118] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)S66.CB, (T0357)E99.CB) [> 3.2894 = 5.4823 < 7.1270] w=0.0699 to align
# Constraint # added constraint: constraint((T0357)T63.CB, (T0357)E99.CB) [> 2.2226 = 3.7043 < 4.8156] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)T63.CB, (T0357)I100.CB) [> 4.3058 = 7.1764 < 9.3293] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)T63.CB, (T0357)P101.CB) [> 3.0951 = 5.1584 < 6.7059] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)T63.CB, (T0357)V103.CB) [> 3.5977 = 5.9961 < 7.7950] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)T63.CB, (T0357)R106.CB) [> 3.2288 = 5.3814 < 6.9958] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)V64.CB, (T0357)L102.CB) [> 4.7532 = 7.9220 < 10.2986] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)G65.CA, (T0357)V93.CB) [> 4.4783 = 7.4639 < 9.7031] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)G46.CA, (T0357)N71.CB) [> 3.4766 = 5.7943 < 7.5326] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)A81.CB) [> 4.1332 = 6.8887 < 8.9553] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)G59.CA, (T0357)K85.CB) [> 2.4634 = 4.1057 < 5.3374] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)T63.CB, (T0357)K85.CB) [> 4.0075 = 6.6791 < 8.6829] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)T63.CB, (T0357)K86.CB) [> 2.4211 = 4.0352 < 5.2457] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)T63.CB, (T0357)A98.CB) [> 3.5117 = 5.8529 < 7.6087] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)I91.CB, (T0357)P101.CB) [> 2.9515 = 4.9192 < 6.3949] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)A92.CB, (T0357)P101.CB) [> 4.3029 = 7.1715 < 9.3230] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)L102.CB, (T0357)K115.CB) [> 3.3823 = 5.6371 < 7.3283] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)K80.CB, (T0357)G94.CA) [> 2.0697 = 3.4495 < 4.4844] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)I82.CB, (T0357)V120.CB) [> 4.5069 = 7.5115 < 9.7649] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)K85.CB, (T0357)M97.CB) [> 4.0697 = 6.7828 < 8.8176] w=0.0691 to align
# Constraint # added constraint: constraint((T0357)C6.CB, (T0357)L19.CB) [> 4.3029 = 7.1715 < 9.3229] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)C6.CB, (T0357)T21.CB) [> 4.7648 = 7.9412 < 10.3236] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)R7.CB, (T0357)L19.CB) [> 2.5826 = 4.3043 < 5.5956] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)R7.CB, (T0357)T21.CB) [> 4.7155 = 7.8591 < 10.2169] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)I53.CB, (T0357)A92.CB) [> 3.4413 = 5.7356 < 7.4563] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)V93.CB) [> 2.8941 = 4.8235 < 6.2705] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)L54.CB, (T0357)G94.CA) [> 3.7445 = 6.2408 < 8.1130] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)A5.CB, (T0357)K22.CB) [> 4.2010 = 7.0017 < 9.1022] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)A5.CB, (T0357)T21.CB) [> 2.5702 = 4.2836 < 5.5687] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)A5.CB, (T0357)V20.CB) [> 4.1412 = 6.9019 < 8.9725] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)A5.CB, (T0357)L19.CB) [> 4.7485 = 7.9142 < 10.2884] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)F4.CB, (T0357)K22.CB) [> 3.6751 = 6.1252 < 7.9628] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)F4.CB, (T0357)T21.CB) [> 4.5902 = 7.6503 < 9.9454] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)F4.CB, (T0357)V20.CB) [> 4.1535 = 6.9225 < 8.9992] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)K3.CB, (T0357)Y24.CB) [> 4.3153 = 7.1922 < 9.3499] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)N84.CB, (T0357)E108.CB) [> 4.6626 = 7.7710 < 10.1023] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)K80.CB, (T0357)V103.CB) [> 3.6876 = 6.1460 < 7.9899] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)V55.CB, (T0357)G94.CA) [> 2.8063 = 4.6772 < 6.0803] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)A95.CB) [> 3.2731 = 5.4553 < 7.0918] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)G94.CA) [> 3.1170 = 5.1950 < 6.7536] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)A95.CB) [> 3.9745 = 6.6242 < 8.6114] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)P57.CB, (T0357)A96.CB) [> 3.6889 = 6.1482 < 7.9927] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)G58.CA, (T0357)A96.CB) [> 3.9426 = 6.5710 < 8.5422] w=0.0677 to align
# Constraint # added constraint: constraint((T0357)I37.CB, (T0357)I82.CB) [> 2.9864 = 4.9773 < 6.4704] w=0.0664 to align
# Constraint # added constraint: constraint((T0357)G29.CA, (T0357)V49.CB) [> 4.0142 = 6.6903 < 8.6974] w=0.0643 to align
# Constraint # added constraint: constraint((T0357)G29.CA, (T0357)I53.CB) [> 4.0718 = 6.7864 < 8.8223] w=0.0643 to align
# Constraint # added constraint: constraint((T0357)G30.CA, (T0357)I44.CB) [> 4.2649 = 7.1082 < 9.2406] w=0.0643 to align
# Constraint # added constraint: constraint((T0357)G30.CA, (T0357)L54.CB) [> 4.7781 = 7.9635 < 10.3525] w=0.0643 to align
# Constraint # added constraint: constraint((T0357)G30.CA, (T0357)V55.CB) [> 4.4912 = 7.4854 < 9.7310] w=0.0643 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)L54.CB) [> 3.0177 = 5.0294 < 6.5382] w=0.0642 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)V55.CB) [> 3.9167 = 6.5279 < 8.4862] w=0.0642 to align
# Constraint # added constraint: constraint((T0357)I25.CB, (T0357)I82.CB) [> 4.7538 = 7.9231 < 10.3000] w=0.0642 to align
# Constraint # added constraint: constraint((T0357)L28.CB, (T0357)V68.CB) [> 3.7769 = 6.2949 < 8.1834] w=0.0642 to align
# Constraint # added constraint: constraint((T0357)G12.CA, (T0357)N123.CB) [> 4.0361 = 6.7268 < 8.7449] w=0.0642 to align
# Constraint # added constraint: constraint((T0357)L19.CB, (T0357)I31.CB) [> 4.6825 = 7.8043 < 10.1455] w=0.0642 to align
# Constraint # added constraint: constraint((T0357)V93.CB, (T0357)N123.CB) [> 4.1487 = 6.9145 < 8.9889] w=0.0642 to align
# Constraint # added constraint: constraint((T0357)G36.CA, (T0357)R52.CB) [> 4.6279 = 7.7132 < 10.0272] w=0.0642 to align
# Constraint # added constraint: constraint((T0357)F56.CB, (T0357)V103.CB) [> 4.3703 = 7.2839 < 9.4691] w=0.0642 to align
# Constraint # added constraint: constraint((T0357)G58.CA, (T0357)V103.CB) [> 4.6027 = 7.6711 < 9.9724] w=0.0642 to align
# Constraint # added constraint: constraint((T0357)N84.CB, (T0357)A96.CB) [> 3.8934 = 6.4890 < 8.4358] w=0.0642 to align
# Constraint # added constraint: constraint((T0357)N84.CB, (T0357)M97.CB) [> 4.4424 = 7.4040 < 9.6251] w=0.0642 to align
# Constraint # added constraint: constraint((T0357)K85.CB, (T0357)P101.CB) [> 4.1952 = 6.9920 < 9.0896] w=0.0642 to align
# Constraint # added constraint: constraint((T0357)K85.CB, (T0357)V103.CB) [> 2.2083 = 3.6804 < 4.7846] w=0.0642 to align
# Constraint # added constraint: constraint((T0357)E17.CB, (T0357)S26.CB) [> 4.5610 = 7.6017 < 9.8823] w=0.0610 to align
# Constraint # added constraint: constraint((T0357)L70.CB, (T0357)I82.CB) [> 3.3153 = 5.5255 < 7.1831] w=0.0586 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)V64.CB) [> 2.5768 = 4.2946 < 5.5830] w=0.0579 to align
# Constraint # added constraint: constraint((T0357)A18.CB, (T0357)Y67.CB) [> 4.3711 = 7.2851 < 9.4706] w=0.0579 to align
# Constraint # added constraint: constraint((T0357)V20.CB, (T0357)V68.CB) [> 3.6930 = 6.1550 < 8.0016] w=0.0579 to align
# Constraint # added constraint: constraint((T0357)I31.CB, (T0357)K80.CB) [> 4.5779 = 7.6298 < 9.9188] w=0.0579 to align
# Constraint # added constraint: constraint((T0357)A113.CB, (T0357)G127.CA) [> 4.2098 = 7.0163 < 9.1213] w=0.0579 to align
# Constraint # added constraint: constraint((T0357)I91.CB, (T0357)G127.CA) [> 4.3806 = 7.3010 < 9.4913] w=0.0579 to align
# Constraint # added constraint: constraint((T0357)V68.CB, (T0357)I82.CB) [> 4.5849 = 7.6414 < 9.9339] w=0.0258 to align
# Constraint # added constraint: constraint((T0357)N71.CB, (T0357)K80.CB) [> 4.0512 = 6.7520 < 8.7777] w=0.0258 to align
# Constraint # added constraint: constraint((T0357)T87.CB, (T0357)Y128.CB) [> 3.0387 = 5.0645 < 6.5839] w=0.0172 to align
# Constraint # added constraint: constraint((T0357)K86.CB, (T0357)Y128.CB) [> 4.4828 = 7.4713 < 9.7127] w=0.0172 to align
# Constraint # added constraint: constraint((T0357)V68.CB, (T0357)A96.CB) [> 3.0057 = 5.0095 < 6.5124] w=0.0172 to align
# Constraint # added constraint: constraint((T0357)E43.CB, (T0357)Y67.CB) [> 2.9156 = 4.8594 < 6.3172] w=0.0172 to align
# Constraint # added constraint: constraint((T0357)V38.CB, (T0357)Y67.CB) [> 3.7816 = 6.3027 < 8.1935] w=0.0172 to align
# Constraint # added constraint: constraint((T0357)E88.CB, (T0357)Y128.CB) [> 3.8297 = 6.3829 < 8.2978] w=0.0172 to align
# Constraint # added constraint: constraint((T0357)A92.CB, (T0357)G127.CA) [> 4.2897 = 7.1495 < 9.2944] w=0.0172 to align
# Constraint # added constraint: constraint((T0357)A92.CB, (T0357)Y128.CB) [> 4.6701 = 7.7835 < 10.1186] w=0.0172 to align
# Constraint # added constraint: constraint((T0357)P101.CB, (T0357)A113.CB) [> 3.1846 = 5.3077 < 6.9000] w=0.0172 to align
# Constraint # added constraint: constraint((T0357)K80.CB, (T0357)M97.CB) [> 4.7049 = 7.8416 < 10.1940] w=0.0086 to align
# SetCost created cost = 
#	( 1.0000 * align )
# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0357/
# command:# reading script from file servers-clean.under
# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0357/decoys/
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1
# choosing archetypes in rotamer library
# Found a chain break before 131
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_POPULUS_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS5
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1
# Found a chain break before 136
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_RECOM_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS5
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1
# Found a chain break before 136
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation 3D-JIGSAW_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS5
# ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1
# Found a chain break before 104
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS1
# ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1
# Found a chain break before 110
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS2
# ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1
# Found a chain break before 103
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS3
# ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1
# Found a chain break before 26
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS4
# ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1
# Found a chain break before 131
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS5
# ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1
# Found a chain break before 131
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS1
# ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1
# Found a chain break before 121
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS2
# ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1
# Found a chain break before 129
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS3
# ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1
# Found a chain break before 129
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS4
# ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS5
# ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1
# Found a chain break before 73
# copying to AlignedFragments data structure
# naming current conformation BayesHH_TS1
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS1
# ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1
# Found a chain break before 125
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS1
# ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS2
# ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1
# Found a chain break before 138
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS3
# ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1
# Found a chain break before 106
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS4
# ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1
# Found a chain break before 126
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS5
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS1
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS2
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS3
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS4
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS5
# ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Distill_TS1
# ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Distill_TS2
# ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Distill_TS3
# ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Distill_TS4
# ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Distill_TS5
# ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1
# Found a chain break before 139
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS1
# ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS2
# ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS3
# ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS4
# ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS5
# ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1
# Found a chain break before 136
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS1
# ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1
# Found a chain break before 125
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS2
# ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS3
# ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1
# Found a chain break before 126
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS4
# ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS5
# ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1
# Found a chain break before 104
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS1
# ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1
# Found a chain break before 100
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS2
# ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1
# Found a chain break before 55
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS3
# ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1
# Found a chain break before 81
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS4
# ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1
# Found a chain break before 112
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS5
# ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL1
# ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL2
# ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL3
# ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL4
# ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FORTE1_AL5
# ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL1
# ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL2
# ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL3
# ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL4
# ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL5
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1
# Found a chain break before 140
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS1
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1
# naming current conformation FPSOLVER-SERVER_TS2
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1
# Found a chain break before 87
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS3
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1
# Found a chain break before 105
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS4
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1
# Found a chain break before 123
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS5
# ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS1
# ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1
# Found a chain break before 89
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS2
# ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1
# naming current conformation FUGMOD_TS3
# ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1
# Found a chain break before 65
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS4
# ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1
# Found a chain break before 128
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS5
# ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL1
# ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL2
# ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL3
# ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1
Skipped atom 399, because occupancy 1 <= existing 1.000 in servers/FUGUE_AL4.pdb.gz
Skipped atom 401, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL4.pdb.gz
Skipped atom 403, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL4.pdb.gz
Skipped atom 405, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL4.pdb.gz
Skipped atom 407, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL4.pdb.gz
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL4
# ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL5
# ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FUNCTION_TS1
# ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation FUNCTION_TS2
# ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1
# Found a chain break before 136
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS3
# ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1
# Found a chain break before 136
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS4
# ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1
# Found a chain break before 138
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS5
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1
# Found a chain break before 79
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS1
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1
# Found a chain break before 79
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS2
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS3
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS4
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS5
# ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1
# Found a chain break before 46
# copying to AlignedFragments data structure
# naming current conformation HHpred1_TS1
# ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1
# naming current conformation HHpred2_TS1
# ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1
# naming current conformation HHpred3_TS1
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS1
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS2
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS3
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS4
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS5
# ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1
# Found a chain break before 131
# copying to AlignedFragments data structure
# naming current conformation LOOPP_TS1
# ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS2
# ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation LOOPP_TS3
# ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS4
# ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS5
# ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1
Error: Reading chain '' from PDB file servers/MIG_FROST_AL1.pdb.gz failed---no such chain.
# naming current conformation MIG_FROST_AL1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1
# Found a chain break before 111
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1
# naming current conformation Ma-OPUS-server2_TS2
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1
# Found a chain break before 119
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS3
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1
# Found a chain break before 61
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS4
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1
# Found a chain break before 129
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS5
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1
# Found a chain break before 47
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1
# Found a chain break before 76
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS2
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1
# Found a chain break before 123
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS3
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1
# Found a chain break before 133
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS4
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1
# Found a chain break before 129
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS5
# ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1
# Found a chain break before 138
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS1
# ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1
# Found a chain break before 139
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS2
# ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1
# Found a chain break before 139
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS3
# ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1
# Found a chain break before 139
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS4
# ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1
# Found a chain break before 139
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS5
# ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation NN_PUT_lab_TS1
# ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1
# Found a chain break before 138
# copying to AlignedFragments data structure
# naming current conformation POMYSL_TS1
# ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1
# Found a chain break before 111
# copying to AlignedFragments data structure
# naming current conformation POMYSL_TS2
# ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1
# Found a chain break before 128
# copying to AlignedFragments data structure
# naming current conformation POMYSL_TS3
# ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1
# Found a chain break before 113
# copying to AlignedFragments data structure
# naming current conformation POMYSL_TS4
# ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1
# Found a chain break before 84
# copying to AlignedFragments data structure
# naming current conformation POMYSL_TS5
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1
# Found a chain break before 51
# copying to AlignedFragments data structure
# naming current conformation PROTINFO-AB_TS2
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1
# Found a chain break before 47
# copying to AlignedFragments data structure
# naming current conformation PROTINFO-AB_TS3
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS4
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1
# Found a chain break before 50
# copying to AlignedFragments data structure
# naming current conformation PROTINFO-AB_TS5
# ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1
# naming current conformation PROTINFO_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1
# Found a chain break before 111
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS2
# ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1
# naming current conformation PROTINFO_TS3
# ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1
# Found a chain break before 140
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS4
# ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1
# Found a chain break before 51
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS5
# ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS1
# ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Pcons6_TS2
# ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS3
# ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS4
# ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS5
# ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Phyre-1_TS1
# ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS1
# ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Phyre-2_TS2
# ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Phyre-2_TS3
# ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Phyre-2_TS4
# ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Phyre-2_TS5
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1
# Found a chain break before 113
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS1
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1
# Found a chain break before 109
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS2
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS3
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS4
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS5
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1
# Found a chain break before 128
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS1
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS2
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1
# naming current conformation RAPTOR-ACE_TS3
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1
# Found a chain break before 121
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS4
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1
# Found a chain break before 78
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS5
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1
# Found a chain break before 140
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS1
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1
# Found a chain break before 138
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS2
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1
# Found a chain break before 136
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS3
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1
# Found a chain break before 79
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS4
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1
# Found a chain break before 100
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS5
# ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1
# Found a chain break before 128
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS1
# ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1
# Found a chain break before 131
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS2
# ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1
# Found a chain break before 57
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS3
# ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1
# Found a chain break before 106
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS4
# ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1
# Found a chain break before 79
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS5
# ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1
# Found a chain break before 106
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS1
# ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1
# Found a chain break before 129
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS2
# ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1
# Found a chain break before 109
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS3
# ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1
# Found a chain break before 113
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS4
# ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1
# Found a chain break before 113
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS5
# ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1
# Found a chain break before 110
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS1
# ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1
# Found a chain break before 79
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS2
# ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1
# Found a chain break before 122
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS3
# ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1
# Found a chain break before 123
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS4
# ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1
# Found a chain break before 59
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS5
# ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL1
# ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL2
# ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL3
# ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL4
# ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL5
# ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL1
# ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL2
# ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL3
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1
# Found a chain break before 139
# copying to AlignedFragments data structure
# naming current conformation SAM_T06_server_TS1
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS2
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS3
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS4
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS5
# ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1
# naming current conformation SP3_TS1
# ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1
# Found a chain break before 78
# copying to AlignedFragments data structure
# naming current conformation SP3_TS2
# ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1
# Found a chain break before 102
# copying to AlignedFragments data structure
# naming current conformation SP3_TS3
# ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1
# Found a chain break before 89
# copying to AlignedFragments data structure
# naming current conformation SP3_TS4
# ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1
# Found a chain break before 121
# copying to AlignedFragments data structure
# naming current conformation SP3_TS5
# ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation SP4_TS1
# ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1
# Found a chain break before 87
# copying to AlignedFragments data structure
# naming current conformation SP4_TS2
# ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1
# naming current conformation SP4_TS3
# ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1
# naming current conformation SP4_TS4
# ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1
# Found a chain break before 36
# copying to AlignedFragments data structure
# naming current conformation SP4_TS5
# ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1
# Found a chain break before 99
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS1
# ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1
# Found a chain break before 132
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS2
# ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1
# Found a chain break before 102
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS3
# ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1
# Found a chain break before 55
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS4
# ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1
# naming current conformation SPARKS2_TS5
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS1
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS2
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS3
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS4
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS5
# ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation UNI-EID_expm_TS1
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL1
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL2
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL3
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1
# Found a chain break before 116
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS1
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1
# Found a chain break before 136
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS2
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1
# Found a chain break before 136
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS3
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1
# Found a chain break before 105
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS4
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1
# Found a chain break before 115
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS5
# ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1
# Found a chain break before 136
# copying to AlignedFragments data structure
# naming current conformation beautshot_TS1
# ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation beautshotbase_TS1
# ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL1
# ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL2
# ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL3
# ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL4
# ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL5
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1
# Found a chain break before 131
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1
# Found a chain break before 51
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1
# Found a chain break before 81
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1
# Found a chain break before 64
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1
# Found a chain break before 6
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS5
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1
WARNING: atoms too close: (T0357)V64.O and (T0357)G65.N only 0.000 apart, marking (T0357)G65.N as missing
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1
WARNING: atoms too close: (T0357)P57.O and (T0357)G58.N only 0.000 apart, marking (T0357)G58.N as missing
WARNING: atoms too close: (T0357)L134.O and (T0357)E135.N only 0.000 apart, marking (T0357)E135.N as missing
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1
WARNING: atoms too close: (T0357)K85.O and (T0357)K86.N only 0.000 apart, marking (T0357)K86.N as missing
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1
WARNING: atoms too close: (T0357)P57.O and (T0357)G58.N only 0.000 apart, marking (T0357)G58.N as missing
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1
# Found a chain break before 138
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS5
# ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS5
# ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1
# naming current conformation keasar-server_TS1
# ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1
# Found a chain break before 8
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS2
# ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1
# naming current conformation keasar-server_TS3
# ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1
# naming current conformation keasar-server_TS4
# ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1
# naming current conformation keasar-server_TS5
# ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation mGen-3D_TS1
# ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation nFOLD_TS1
# ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS2
# ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS3
# ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation nFOLD_TS4
# ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS5
# ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1
WARNING: atoms too close: (T0357)Y67.N and (T0357)V68.N only 0.000 apart, marking (T0357)V68.N as missing
WARNING: atoms too close: (T0357)Y67.CA and (T0357)V68.CA only 0.000 apart, marking (T0357)V68.CA as missing
WARNING: atoms too close: (T0357)Y67.CB and (T0357)V68.CB only 0.000 apart, marking (T0357)V68.CB as missing
WARNING: atoms too close: (T0357)Y67.CG and (T0357)V68.CG1 only 0.000 apart, marking (T0357)V68.CG1 as missing
WARNING: atoms too close: (T0357)Y67.O and (T0357)V68.O only 0.000 apart, marking (T0357)V68.O as missing
WARNING: atoms too close: (T0357)Y67.C and (T0357)V68.C only 0.000 apart, marking (T0357)V68.C as missing
WARNING: atoms too close: (T0357)V68.N and (T0357)L69.N only 0.000 apart, marking (T0357)V68.N as missing
WARNING: atoms too close: (T0357)Y67.N and (T0357)L69.N only 0.000 apart, marking (T0357)L69.N as missing
WARNING: atoms too close: (T0357)V68.CA and (T0357)L69.CA only 0.000 apart, marking (T0357)L69.CA as missing
WARNING: atoms too close: (T0357)Y67.CA and (T0357)L69.CA only 0.000 apart, marking (T0357)L69.CA as missing
WARNING: atoms too close: (T0357)V68.CB and (T0357)L69.CB only 0.000 apart, marking (T0357)L69.CB as missing
WARNING: atoms too close: (T0357)Y67.CB and (T0357)L69.CB only 0.000 apart, marking (T0357)L69.CB as missing
WARNING: atoms too close: (T0357)V68.CG1 and (T0357)L69.CG only 0.000 apart, marking (T0357)L69.CG as missing
WARNING: atoms too close: (T0357)Y67.CG and (T0357)L69.CG only 0.000 apart, marking (T0357)L69.CG as missing
WARNING: atoms too close: (T0357)V68.O and (T0357)L69.O only 0.000 apart, marking (T0357)L69.O as missing
WARNING: atoms too close: (T0357)Y67.O and (T0357)L69.O only 0.000 apart, marking (T0357)L69.O as missing
WARNING: atoms too close: (T0357)V68.C and (T0357)L69.C only 0.000 apart, marking (T0357)L69.C as missing
WARNING: atoms too close: (T0357)Y67.C and (T0357)L69.C only 0.000 apart, marking (T0357)L69.C as missing
WARNING: atoms too close: (T0357)L69.N and (T0357)E108.N only 0.000 apart, marking (T0357)L69.N as missing
WARNING: atoms too close: (T0357)V68.N and (T0357)E108.N only 0.000 apart, marking (T0357)V68.N as missing
WARNING: atoms too close: (T0357)Y67.N and (T0357)E108.N only 0.000 apart, marking (T0357)E108.N as missing
WARNING: atoms too close: (T0357)L69.CA and (T0357)E108.CA only 0.000 apart, marking (T0357)E108.CA as missing
WARNING: atoms too close: (T0357)V68.CA and (T0357)E108.CA only 0.000 apart, marking (T0357)E108.CA as missing
WARNING: atoms too close: (T0357)Y67.CA and (T0357)E108.CA only 0.000 apart, marking (T0357)E108.CA as missing
WARNING: atoms too close: (T0357)L69.CB and (T0357)E108.CB only 0.000 apart, marking (T0357)E108.CB as missing
WARNING: atoms too close: (T0357)V68.CB and (T0357)E108.CB only 0.000 apart, marking (T0357)E108.CB as missing
WARNING: atoms too close: (T0357)Y67.CB and (T0357)E108.CB only 0.000 apart, marking (T0357)E108.CB as missing
WARNING: atoms too close: (T0357)L69.CG and (T0357)E108.CG only 0.000 apart, marking (T0357)E108.CG as missing
WARNING: atoms too close: (T0357)V68.CG1 and (T0357)E108.CG only 0.000 apart, marking (T0357)E108.CG as missing
WARNING: atoms too close: (T0357)Y67.CG and (T0357)E108.CG only 0.000 apart, marking (T0357)E108.CG as missing
WARNING: atoms too close: (T0357)L69.O and (T0357)E108.O only 0.000 apart, marking (T0357)E108.O as missing
WARNING: atoms too close: (T0357)V68.O and (T0357)E108.O only 0.000 apart, marking (T0357)E108.O as missing
WARNING: atoms too close: (T0357)Y67.O and (T0357)E108.O only 0.000 apart, marking (T0357)E108.O as missing
WARNING: atoms too close: (T0357)L69.C and (T0357)E108.C only 0.000 apart, marking (T0357)E108.C as missing
WARNING: atoms too close: (T0357)V68.C and (T0357)E108.C only 0.000 apart, marking (T0357)E108.C as missing
WARNING: atoms too close: (T0357)Y67.C and (T0357)E108.C only 0.000 apart, marking (T0357)E108.C as missing
WARNING: atoms too close: (T0357)E108.N and (T0357)K109.N only 0.000 apart, marking (T0357)E108.N as missing
WARNING: atoms too close: (T0357)L69.N and (T0357)K109.N only 0.000 apart, marking (T0357)L69.N as missing
WARNING: atoms too close: (T0357)V68.N and (T0357)K109.N only 0.000 apart, marking (T0357)V68.N as missing
WARNING: atoms too close: (T0357)Y67.N and (T0357)K109.N only 0.000 apart, marking (T0357)K109.N as missing
WARNING: atoms too close: (T0357)E108.CA and (T0357)K109.CA only 0.000 apart, marking (T0357)K109.CA as missing
WARNING: atoms too close: (T0357)L69.CA and (T0357)K109.CA only 0.000 apart, marking (T0357)K109.CA as missing
WARNING: atoms too close: (T0357)V68.CA and (T0357)K109.CA only 0.000 apart, marking (T0357)K109.CA as missing
WARNING: atoms too close: (T0357)Y67.CA and (T0357)K109.CA only 0.000 apart, marking (T0357)K109.CA as missing
WARNING: atoms too close: (T0357)E108.CB and (T0357)K109.CB only 0.000 apart, marking (T0357)K109.CB as missing
WARNING: atoms too close: (T0357)L69.CB and (T0357)K109.CB only 0.000 apart, marking (T0357)K109.CB as missing
WARNING: atoms too close: (T0357)V68.CB and (T0357)K109.CB only 0.000 apart, marking (T0357)K109.CB as missing
WARNING: atoms too close: (T0357)Y67.CB and (T0357)K109.CB only 0.000 apart, marking (T0357)K109.CB as missing
WARNING: atoms too close: (T0357)E108.CG and (T0357)K109.CG only 0.000 apart, marking (T0357)K109.CG as missing
WARNING: atoms too close: (T0357)L69.CG and (T0357)K109.CG only 0.000 apart, marking (T0357)K109.CG as missing
WARNING: atoms too close: (T0357)V68.CG1 and (T0357)K109.CG only 0.000 apart, marking (T0357)K109.CG as missing
WARNING: atoms too close: (T0357)Y67.CG and (T0357)K109.CG only 0.000 apart, marking (T0357)K109.CG as missing
WARNING: atoms too close: (T0357)E108.O and (T0357)K109.O only 0.000 apart, marking (T0357)K109.O as missing
WARNING: atoms too close: (T0357)L69.O and (T0357)K109.O only 0.000 apart, marking (T0357)K109.O as missing
WARNING: atoms too close: (T0357)V68.O and (T0357)K109.O only 0.000 apart, marking (T0357)K109.O as missing
WARNING: atoms too close: (T0357)Y67.O and (T0357)K109.O only 0.000 apart, marking (T0357)K109.O as missing
WARNING: atoms too close: (T0357)E108.C and (T0357)K109.C only 0.000 apart, marking (T0357)K109.C as missing
WARNING: atoms too close: (T0357)L69.C and (T0357)K109.C only 0.000 apart, marking (T0357)K109.C as missing
WARNING: atoms too close: (T0357)V68.C and (T0357)K109.C only 0.000 apart, marking (T0357)K109.C as missing
WARNING: atoms too close: (T0357)Y67.C and (T0357)K109.C only 0.000 apart, marking (T0357)K109.C as missing
WARNING: atoms too close: (T0357)K109.N and (T0357)F110.N only 0.000 apart, marking (T0357)K109.N as missing
WARNING: atoms too close: (T0357)E108.N and (T0357)F110.N only 0.000 apart, marking (T0357)E108.N as missing
WARNING: atoms too close: (T0357)L69.N and (T0357)F110.N only 0.000 apart, marking (T0357)L69.N as missing
WARNING: atoms too close: (T0357)V68.N and (T0357)F110.N only 0.000 apart, marking (T0357)V68.N as missing
WARNING: atoms too close: (T0357)Y67.N and (T0357)F110.N only 0.000 apart, marking (T0357)F110.N as missing
WARNING: atoms too close: (T0357)K109.CA and (T0357)F110.CA only 0.000 apart, marking (T0357)F110.CA as missing
WARNING: atoms too close: (T0357)E108.CA and (T0357)F110.CA only 0.000 apart, marking (T0357)F110.CA as missing
WARNING: atoms too close: (T0357)L69.CA and (T0357)F110.CA only 0.000 apart, marking (T0357)F110.CA as missing
WARNING: atoms too close: (T0357)V68.CA and (T0357)F110.CA only 0.000 apart, marking (T0357)F110.CA as missing
WARNING: atoms too close: (T0357)Y67.CA and (T0357)F110.CA only 0.000 apart, marking (T0357)F110.CA as missing
WARNING: atoms too close: (T0357)K109.CB and (T0357)F110.CB only 0.000 apart, marking (T0357)F110.CB as missing
WARNING: atoms too close: (T0357)E108.CB and (T0357)F110.CB only 0.000 apart, marking (T0357)F110.CB as missing
WARNING: atoms too close: (T0357)L69.CB and (T0357)F110.CB only 0.000 apart, marking (T0357)F110.CB as missing
WARNING: atoms too close: (T0357)V68.CB and (T0357)F110.CB only 0.000 apart, marking (T0357)F110.CB as missing
WARNING: atoms too close: (T0357)Y67.CB and (T0357)F110.CB only 0.000 apart, marking (T0357)F110.CB as missing
WARNING: atoms too close: (T0357)K109.CG and (T0357)F110.CG only 0.000 apart, marking (T0357)F110.CG as missing
WARNING: atoms too close: (T0357)E108.CG and (T0357)F110.CG only 0.000 apart, marking (T0357)F110.CG as missing
WARNING: atoms too close: (T0357)L69.CG and (T0357)F110.CG only 0.000 apart, marking (T0357)F110.CG as missing
WARNING: atoms too close: (T0357)V68.CG1 and (T0357)F110.CG only 0.000 apart, marking (T0357)F110.CG as missing
WARNING: atoms too close: (T0357)Y67.CG and (T0357)F110.CG only 0.000 apart, marking (T0357)F110.CG as missing
WARNING: atoms too close: (T0357)K109.O and (T0357)F110.O only 0.000 apart, marking (T0357)F110.O as missing
WARNING: atoms too close: (T0357)E108.O and (T0357)F110.O only 0.000 apart, marking (T0357)F110.O as missing
WARNING: atoms too close: (T0357)L69.O and (T0357)F110.O only 0.000 apart, marking (T0357)F110.O as missing
WARNING: atoms too close: (T0357)V68.O and (T0357)F110.O only 0.000 apart, marking (T0357)F110.O as missing
WARNING: atoms too close: (T0357)Y67.O and (T0357)F110.O only 0.000 apart, marking (T0357)F110.O as missing
WARNING: atoms too close: (T0357)K109.C and (T0357)F110.C only 0.000 apart, marking (T0357)F110.C as missing
WARNING: atoms too close: (T0357)E108.C and (T0357)F110.C only 0.000 apart, marking (T0357)F110.C as missing
WARNING: atoms too close: (T0357)L69.C and (T0357)F110.C only 0.000 apart, marking (T0357)F110.C as missing
WARNING: atoms too close: (T0357)V68.C and (T0357)F110.C only 0.000 apart, marking (T0357)F110.C as missing
WARNING: atoms too close: (T0357)Y67.C and (T0357)F110.C only 0.000 apart, marking (T0357)F110.C as missing
WARNING: atoms too close: (T0357)F110.N and (T0357)F111.N only 0.000 apart, marking (T0357)F110.N as missing
WARNING: atoms too close: (T0357)K109.N and (T0357)F111.N only 0.000 apart, marking (T0357)K109.N as missing
WARNING: atoms too close: (T0357)E108.N and (T0357)F111.N only 0.000 apart, marking (T0357)E108.N as missing
WARNING: atoms too close: (T0357)L69.N and (T0357)F111.N only 0.000 apart, marking (T0357)L69.N as missing
WARNING: atoms too close: (T0357)V68.N and (T0357)F111.N only 0.000 apart, marking (T0357)V68.N as missing
WARNING: atoms too close: (T0357)Y67.N and (T0357)F111.N only 0.000 apart, marking (T0357)F111.N as missing
WARNING: atoms too close: (T0357)F110.CA and (T0357)F111.CA only 0.000 apart, marking (T0357)F111.CA as missing
WARNING: atoms too close: (T0357)K109.CA and (T0357)F111.CA only 0.000 apart, marking (T0357)F111.CA as missing
WARNING: atoms too close: (T0357)E108.CA and (T0357)F111.CA only 0.000 apart, marking (T0357)F111.CA as missing
WARNING: atoms too close: (T0357)L69.CA and (T0357)F111.CA only 0.000 apart, marking (T0357)F111.CA as missing
WARNING: atoms too close: (T0357)V68.CA and (T0357)F111.CA only 0.000 apart, marking (T0357)F111.CA as missing
WARNING: atoms too close: (T0357)Y67.CA and (T0357)F111.CA only 0.000 apart, marking (T0357)F111.CA as missing
WARNING: atoms too close: (T0357)F110.CB and (T0357)F111.CB only 0.000 apart, marking (T0357)F111.CB as missing
WARNING: atoms too close: (T0357)K109.CB and (T0357)F111.CB only 0.000 apart, marking (T0357)F111.CB as missing
WARNING: atoms too close: (T0357)E108.CB and (T0357)F111.CB only 0.000 apart, marking (T0357)F111.CB as missing
WARNING: atoms too close: (T0357)L69.CB and (T0357)F111.CB only 0.000 apart, marking (T0357)F111.CB as missing
WARNING: atoms too close: (T0357)V68.CB and (T0357)F111.CB only 0.000 apart, marking (T0357)F111.CB as missing
WARNING: atoms too close: (T0357)Y67.CB and (T0357)F111.CB only 0.000 apart, marking (T0357)F111.CB as missing
WARNING: atoms too close: (T0357)F110.CG and (T0357)F111.CG only 0.000 apart, marking (T0357)F111.CG as missing
WARNING: atoms too close: (T0357)K109.CG and (T0357)F111.CG only 0.000 apart, marking (T0357)F111.CG as missing
WARNING: atoms too close: (T0357)E108.CG and (T0357)F111.CG only 0.000 apart, marking (T0357)F111.CG as missing
WARNING: atoms too close: (T0357)L69.CG and (T0357)F111.CG only 0.000 apart, marking (T0357)F111.CG as missing
WARNING: atoms too close: (T0357)V68.CG1 and (T0357)F111.CG only 0.000 apart, marking (T0357)F111.CG as missing
WARNING: atoms too close: (T0357)Y67.CG and (T0357)F111.CG only 0.000 apart, marking (T0357)F111.CG as missing
WARNING: atoms too close: (T0357)F110.O and (T0357)F111.O only 0.000 apart, marking (T0357)F111.O as missing
WARNING: atoms too close: (T0357)K109.O and (T0357)F111.O only 0.000 apart, marking (T0357)F111.O as missing
WARNING: atoms too close: (T0357)E108.O and (T0357)F111.O only 0.000 apart, marking (T0357)F111.O as missing
WARNING: atoms too close: (T0357)L69.O and (T0357)F111.O only 0.000 apart, marking (T0357)F111.O as missing
WARNING: atoms too close: (T0357)V68.O and (T0357)F111.O only 0.000 apart, marking (T0357)F111.O as missing
WARNING: atoms too close: (T0357)Y67.O and (T0357)F111.O only 0.000 apart, marking (T0357)F111.O as missing
WARNING: atoms too close: (T0357)F110.C and (T0357)F111.C only 0.000 apart, marking (T0357)F111.C as missing
WARNING: atoms too close: (T0357)K109.C and (T0357)F111.C only 0.000 apart, marking (T0357)F111.C as missing
WARNING: atoms too close: (T0357)E108.C and (T0357)F111.C only 0.000 apart, marking (T0357)F111.C as missing
WARNING: atoms too close: (T0357)L69.C and (T0357)F111.C only 0.000 apart, marking (T0357)F111.C as missing
WARNING: atoms too close: (T0357)V68.C and (T0357)F111.C only 0.000 apart, marking (T0357)F111.C as missing
WARNING: atoms too close: (T0357)Y67.C and (T0357)F111.C only 0.000 apart, marking (T0357)F111.C as missing
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation panther2_TS1
# ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0357 can't currently be optimized by undertaker
# naming current conformation shub_TS1
# command:Using radius: 8.0000
Metaserver mode
NUMB_ALIGNS: 254
model score 1.6353
model score 2.2968
model score 1.8934
model score 1.4982
model score 1.6357
model score 1.3375
model score 1.3408
model score 1.3823
model score 1.5585
model score 1.3408
model score 1.2203
model score 1.3390
model score 1.4569
model score 1.4178
model score 1.7215
model score 1.1997
model score 1.1793
model score 2.0532
model score 1.6557
model score 1.3173
model score 1.3173
model score 1.3805
model score 1.3730
model score 1.3954
model score 1.2989
model score 0.9325
model score 0.8598
model score 0.7664
model score 0.7904
model score 0.9398
model score 0.8311
model score 1.1315
model score 1.3129
model score 0.6752
model score 1.6206
model score 1.4458
model score 1.7678
model score 1.2879
model score 1.2850
model score 1.2891
model score 1.2761
model score 1.2900
model score 1.0930
model score 1.1647
model score 0.8564
model score 1.0459
model score 1.0489
model score 1.0147
model score 0.7664
model score 1.0489
model score 1.1315
model score 1.0459
model score 1.1997
model score 1.7418
model score 1.9058
model score 1.4143
model score 2.1470
model score 1.2725
model score 1.2700
model score 1.2780
model score 1.2800
model score 1.2926
model score 1.2725
model score 1.2704
model score 1.2765
model score 1.2791
model score 1.2800
model score 1.9125
model score 1.9640
model score 1.9692
model score 2.1897
model score 2.3422
model score 0.8688
model score 1.5323
model score 1.5948
model score 1.9064
model score 1.6921
model score 1.2674
model score 1.2842
model score 1.2719
model score 1.2768
model score 1.2753
model score 1.2754
model score 1.1358
model score 1.0401
model score 1.4289
model score 1.3526
model score 0.8253
model score 0.8659
model score 0.8356
model score 1.0689
model score 1.0156
model score 1.0695
model score 1.0432
model score 1.0432
model score 1.2771
model score 1.2771
model score 1.4578
model score 1.0884
model score 0.9781
model score 1.5261
model score 0.7532
model score 1.5856
model score 1.2291
model score 1.4617
model score 0.7611
model score 1.1118
model score 1.3977
model score 1.6962
model score 0.8831
model score 0.7557
model score 1.1355
model score 1.1393
model score 1.4328
model score 0.8831
model score 0.7231
model score 0.8214
model score 0.7293
model score 0.9119
model score 0.8195
model score 1.2674
model score 1.9243
model score 1.8081
model score 1.6573
model score 1.7419
model score 1.8610
model score 1.0818
model score 1.0861
model score 1.1002
model score 1.0907
model score 1.1388
model score 1.0614
model score 1.3570
model score 1.0484
model score 1.0933
model score 1.1332
model score 0.9543
model score 1.0287
model score 1.0499
model score 1.0367
model score 1.0571
model score 0.9778
model score 0.9057
model score 1.0068
model score 1.0081
model score 0.9629
model score 0.9643
model score 0.9067
model score 0.7917
model score 0.8153
model score 1.0499
model score 0.9651
model score 0.7841
model score 0.8633
model score 0.7553
model score 0.8344
model score 0.8131
model score 0.9654
model score 0.7727
model score 0.9584
model score 0.7474
model score 1.1699
model score 0.7750
model score 0.9247
model score 0.7440
model score 1.1614
model score 0.9437
model score 1.0127
model score 1.1151
model score 0.7917
model score 0.9067
model score 0.9154
model score 1.2436
model score 1.1571
model score 1.1926
model score 1.1429
model score 1.1792
model score 1.2691
model score 1.2771
model score 1.2823
model score 1.2782
model score 1.2861
model score 1.2773
model score 1.2773
model score 1.2898
model score 1.0462
model score 0.9300
model score 0.8163
model score 1.0926
model score 0.9746
model score 0.7553
model score 0.8131
model score 1.2188
model score 1.5210
model score 0.8344
model score 0.8160
model score 0.8375
model score 1.1024
model score 1.5413
model score 1.4066
model score 0.7703
model score 0.9247
model score 1.8838
model score 2.3362
model score 1.8565
model score 1.2762
model score 1.2786
model score 1.2746
model score 1.2751
model score 1.2756
model score 0.9200
model score 1.2704
model score 1.2724
model score 1.2746
model score 0.6148
model score 0.6174
model score 0.6422
model score 0.5884
model score 0.6836
model score 0.8559
model score 1.0722
model score 1.2703
model score 1.2771
model score 1.2775
model score 1.2771
model score 1.2838
model score 0.8809
model score 1.1481
model score 1.2394
model score 1.5194
model score 1.4863
model score 2.0156
model score 2.0702
model score 1.7723
model score 2.0571
model score 2.4168
model score 1.0135
model score 1.0620
model score 1.3099
model score 0.9219
model score 1.3494
model score 1.0678
model score 1.5882
model score 1.1130
model score 0.9060
model score 1.2691
model score 1.7871
model score 1.6401
model score 1.1735
model score 1.4125
model score 1.2647
model score 1.3880
model score 1.0941
model score 0.9809
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Adding 7212 constraints to all2.constraints
Done adding distance constraints
# command:Reading probabilities from probabilities.dat
Reading constraints from ConstraintSet all2.constraints
maxweight: 1.0000
Optimizing...
 Probability sum: -269.8608, CN propb: -269.8608 weights: 0.2292 constraints: 744
# command:Found ConstraintSet
# PrintContacts align.constraints_meta02
Number of constraints in align2.constraints 744
# command:Found ConstraintSet
# PrintContacts align_bonus.constraints_meta02
Number of constraints in align2.constraints.bonus 744
# command:Found ConstraintSet
# PrintContacts rejected.constraints_meta02
Number of constraints in rejected2.constraints 6468
# command:Found ConstraintSet
# PrintContacts rejected_bonus.constraints_meta02
Number of constraints in rejected2.constraints.bonus 6468
# command:Found ConstraintSet
# PrintContacts non_contacts.constraints_meta02
Number of constraints in noncontact2.constraints 0
# command:Found ConstraintSet
# PrintContacts non_contacts_bonus.constraints_meta02
Number of constraints in noncontact2.constraints.bonus 0
# command:Found ConstraintSet
# PrintContacts all.constraints_meta02
Number of constraints in all2.constraints 7212
# command: