# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0357/ # command:# Making conformation for sequence T0357 numbered 1 through 141 Created new target T0357 from T0357.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0357/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0357//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0357/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0357//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0357/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0357/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0357/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q1gA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1q1gA expands to /projects/compbio/data/pdb/1q1g.pdb.gz 1q1gA:# T0357 read from 1q1gA/merged-good-all-a2m # 1q1gA read from 1q1gA/merged-good-all-a2m # adding 1q1gA to template set # found chain 1q1gA in template set T0357 7 :RAITRGRAEGEALVT 1q1gA 40 :DLAYNREYKSVECHY # choosing archetypes in rotamer library T0357 45 :KGESV 1q1gA 55 :KGQKF T0357 54 :LVFPGGKGSTVGSYVLLNLRKNGV 1q1gA 60 :LCVSHGVGSAGCAVCFEELCQNGA T0357 80 :KAIINK 1q1gA 84 :KVIIRA T0357 86 :KTETIIAVGAAMAE 1q1gA 101 :KRGDICICNAAVRE T0357 100 :IPLV 1q1gA 126 :FPAV T0357 106 :RDEKFFEAVK 1q1gA 130 :GDFDVYDTLN Number of specific fragments extracted= 7 number of extra gaps= 0 total=7 Number of alignments=1 # 1q1gA read from 1q1gA/merged-good-all-a2m # found chain 1q1gA in template set T0357 6 :CRAITRGRAEGEALVT 1q1gA 39 :VDLAYNREYKSVECHY T0357 45 :KGES 1q1gA 55 :KGQK T0357 53 :ILVFPGGKGSTVGSYVLLNLRKNGV 1q1gA 59 :FLCVSHGVGSAGCAVCFEELCQNGA T0357 80 :KAIINK 1q1gA 84 :KVIIRA T0357 86 :KTETIIAVGAAMAE 1q1gA 101 :KRGDICICNAAVRE T0357 100 :IPLV 1q1gA 126 :FPAV T0357 106 :RDEKFFEAVK 1q1gA 130 :GDFDVYDTLN Number of specific fragments extracted= 7 number of extra gaps= 0 total=14 Number of alignments=2 # 1q1gA read from 1q1gA/merged-good-all-a2m # found chain 1q1gA in template set T0357 7 :RAITRGRAEGEALVT 1q1gA 40 :DLAYNREYKSVECHY T0357 45 :KGESV 1q1gA 55 :KGQKF T0357 54 :LVFPGGKGSTVGSYVLLNLRKNGV 1q1gA 60 :LCVSHGVGSAGCAVCFEELCQNGA T0357 80 :KAIIN 1q1gA 84 :KVIIR Number of specific fragments extracted= 4 number of extra gaps= 0 total=18 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2d13A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2d13A expands to /projects/compbio/data/pdb/2d13.pdb.gz 2d13A:# T0357 read from 2d13A/merged-good-all-a2m # 2d13A read from 2d13A/merged-good-all-a2m # adding 2d13A to template set # found chain 2d13A in template set Warning: unaligning (T0357)T89 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0357)D107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 T0357 53 :ILVF 2d13A 7 :VAVL T0357 59 :GKGSTVGSYVLLNLRKNGVAPKAIINKKTE 2d13A 11 :YSGGKDSNYALYWALKSGLRVRYLVSMVSE T0357 100 :IPLVEVR 2d13A 64 :IPIIKGF T0357 108 :EKFFEAVKT 2d13A 80 :EDLKNVLEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=22 Number of alignments=4 # 2d13A read from 2d13A/merged-good-all-a2m # found chain 2d13A in template set Warning: unaligning (T0357)T89 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 Warning: unaligning (T0357)D107 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)E74 T0357 52 :RILVF 2d13A 6 :DVAVL T0357 59 :GKGSTVGSYVLLNLRKNGVAPKAIINKKTE 2d13A 11 :YSGGKDSNYALYWALKSGLRVRYLVSMVSE T0357 100 :IPLVEVR 2d13A 64 :IPIIKGF T0357 108 :EKFFEAVKT 2d13A 80 :EDLKNVLEG Number of specific fragments extracted= 4 number of extra gaps= 0 total=26 Number of alignments=5 # 2d13A read from 2d13A/merged-good-all-a2m # found chain 2d13A in template set Warning: unaligning (T0357)T89 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2d13A)N51 T0357 52 :RILVFP 2d13A 6 :DVAVLY T0357 60 :KGSTVGSYVLLNLRKNGVAPKAIINKKTE 2d13A 12 :SGGKDSNYALYWALKSGLRVRYLVSMVSE Number of specific fragments extracted= 2 number of extra gaps= 0 total=28 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bg6/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bg6 expands to /projects/compbio/data/pdb/1bg6.pdb.gz 1bg6:Warning: there is no chain 1bg6 will retry with 1bg6A # T0357 read from 1bg6/merged-good-all-a2m # 1bg6 read from 1bg6/merged-good-all-a2m # adding 1bg6 to template set # found chain 1bg6 in template set T0357 105 :VRDEKFFEAVKTGDRVVVNADEGYVE 1bg6 34 :DIDAQRIKEIQDRGAIIAEGPGLAGT Number of specific fragments extracted= 1 number of extra gaps= 0 total=29 Number of alignments=7 # 1bg6 read from 1bg6/merged-good-all-a2m # found chain 1bg6 in template set T0357 50 :AGRILVF 1bg6 101 :EGQLIIL T0357 59 :GKGSTVGSYVLLN 1bg6 108 :NPGATGGALEFRK Number of specific fragments extracted= 2 number of extra gaps= 0 total=31 Number of alignments=8 # 1bg6 read from 1bg6/merged-good-all-a2m # found chain 1bg6 in template set T0357 50 :AGRILVF 1bg6 101 :EGQLIIL T0357 59 :GKGSTVGSYVLLN 1bg6 108 :NPGATGGALEFRK T0357 72 :LRKNGVAPKAIIN 1bg6 122 :LRENGAPEVTIGE Number of specific fragments extracted= 3 number of extra gaps= 0 total=34 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vbkA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vbkA expands to /projects/compbio/data/pdb/1vbk.pdb.gz 1vbkA:# T0357 read from 1vbkA/merged-good-all-a2m # 1vbkA read from 1vbkA/merged-good-all-a2m # adding 1vbkA to template set # found chain 1vbkA in template set T0357 8 :AITRG 1vbkA 155 :EIMQG T0357 17 :EALVTKEYISFLGGIDKET 1vbkA 160 :KAYIYTEKIKGWGGLPIGT T0357 50 :AGRILVFPGG 1vbkA 179 :EGRMIGILHD T0357 63 :TVGSYVLLNLRKNGVAPKAIINKKTE 1vbkA 189 :ELSALAIFLMMKRGVEVIPVYIGKDD T0357 100 :IPLVEVRDEK 1vbkA 236 :GFLVVAESFD T0357 110 :FFEAVKT 1vbkA 247 :VLKLIRD Number of specific fragments extracted= 6 number of extra gaps= 0 total=40 Number of alignments=10 # 1vbkA read from 1vbkA/merged-good-all-a2m # found chain 1vbkA in template set T0357 8 :AITRG 1vbkA 155 :EIMQG T0357 17 :EALVTKEYISFLGGIDKETG 1vbkA 160 :KAYIYTEKIKGWGGLPIGTE T0357 51 :GRILVFPGG 1vbkA 180 :GRMIGILHD T0357 63 :TVGSYVLLNLRKNGVA 1vbkA 189 :ELSALAIFLMMKRGVE T0357 92 :AVGAAMAE 1vbkA 205 :VIPVYIGK T0357 100 :IPLVEVRD 1vbkA 236 :GFLVVAES T0357 108 :EKFFEAVKT 1vbkA 245 :DRVLKLIRD Number of specific fragments extracted= 7 number of extra gaps= 0 total=47 Number of alignments=11 # 1vbkA read from 1vbkA/merged-good-all-a2m # found chain 1vbkA in template set T0357 2 :VKFACR 1vbkA 150 :IEIGIE T0357 9 :ITRG 1vbkA 156 :IMQG T0357 17 :EALVTKEYISFLGGIDKET 1vbkA 160 :KAYIYTEKIKGWGGLPIGT T0357 50 :AGRILVFPGG 1vbkA 179 :EGRMIGILHD T0357 63 :TVGSYVLLNLRKNGVAPKAIINKKTET 1vbkA 189 :ELSALAIFLMMKRGVEVIPVYIGKDDK Number of specific fragments extracted= 5 number of extra gaps= 0 total=52 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yavA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1yavA expands to /projects/compbio/data/pdb/1yav.pdb.gz 1yavA:# T0357 read from 1yavA/merged-good-all-a2m # 1yavA read from 1yavA/merged-good-all-a2m # adding 1yavA to template set # found chain 1yavA in template set T0357 37 :IVKEDCE 1yavA 28 :HVQVGNN T0357 65 :GSYVLLNLRKNGVAPKAIINKKTE 1yavA 35 :LEHALLVLTKTGYTAIPVLDPSYR T0357 92 :AVGAA 1yavA 59 :LHGLI T0357 99 :E 1yavA 64 :G T0357 100 :IPLVEVRD 1yavA 96 :IPRLHIND T0357 108 :EKFFEAVKTGDRVVVNADEGYVELI 1yavA 106 :MKGFGMVINNGFVCVENDEQVFEGI Number of specific fragments extracted= 6 number of extra gaps= 0 total=58 Number of alignments=13 # 1yavA read from 1yavA/merged-good-all-a2m # found chain 1yavA in template set T0357 38 :VKEDCE 1yavA 29 :VQVGNN T0357 65 :GSYVLLNLRKNGVAPKAIINKKTE 1yavA 35 :LEHALLVLTKTGYTAIPVLDPSYR T0357 92 :AVGAAM 1yavA 59 :LHGLIG T0357 100 :IPLVEVRD 1yavA 96 :IPRLHIND T0357 108 :EKFFEAVKTGDRVVVNADEGYVEL 1yavA 106 :MKGFGMVINNGFVCVENDEQVFEG Number of specific fragments extracted= 5 number of extra gaps= 0 total=63 Number of alignments=14 # 1yavA read from 1yavA/merged-good-all-a2m # found chain 1yavA in template set T0357 66 :SYVLLNLRKNGVAPKAIINKK 1yavA 36 :EHALLVLTKTGYTAIPVLDPS Number of specific fragments extracted= 1 number of extra gaps= 0 total=64 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hx3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0357/1hx3A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0357/1hx3A/merged-good-all-a2m.gz for input Trying 1hx3A/merged-good-all-a2m Error: Couldn't open file 1hx3A/merged-good-all-a2m or 1hx3A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2g74A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0357/2g74A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0357/2g74A/merged-good-all-a2m.gz for input Trying 2g74A/merged-good-all-a2m Error: Couldn't open file 2g74A/merged-good-all-a2m or 2g74A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1p3rA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0357/1p3rA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0357/1p3rA/merged-good-all-a2m.gz for input Trying 1p3rA/merged-good-all-a2m Error: Couldn't open file 1p3rA/merged-good-all-a2m or 1p3rA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f1dA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0357/2f1dA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0357/2f1dA/merged-good-all-a2m.gz for input Trying 2f1dA/merged-good-all-a2m Error: Couldn't open file 2f1dA/merged-good-all-a2m or 2f1dA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rxyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0357 read from 1rxyA/merged-good-all-a2m # 1rxyA read from 1rxyA/merged-good-all-a2m # found chain 1rxyA in training set T0357 19 :LVTKEYISFLG 1rxyA 44 :LASHREFTTWR T0357 42 :CEIKGES 1rxyA 55 :AELDGKP T0357 53 :ILVFPGGKGSTVGSYVLLNLRKNGV 1rxyA 62 :VIVCSTGIGGPSTSIAVEELAQLGI T0357 78 :APKAIINK 1rxyA 93 :GTTGAIQP T0357 86 :KTETIIAVGAAMAE 1rxyA 103 :NVGDVLVTTASVRL T0357 100 :IPLV 1rxyA 128 :FPAV T0357 106 :RDEKFFEAVK 1rxyA 132 :ADFECTTALV Number of specific fragments extracted= 7 number of extra gaps= 0 total=71 Number of alignments=16 # 1rxyA read from 1rxyA/merged-good-all-a2m # found chain 1rxyA in training set T0357 19 :LVTKEYISFL 1rxyA 44 :LASHREFTTW T0357 43 :EIKGES 1rxyA 56 :ELDGKP T0357 53 :ILVFPGGKGSTVGSYVLLNLRKNGV 1rxyA 62 :VIVCSTGIGGPSTSIAVEELAQLGI T0357 78 :APKAIINK 1rxyA 93 :GTTGAIQP T0357 86 :KTETIIAVGAA 1rxyA 103 :NVGDVLVTTAS T0357 100 :IPLV 1rxyA 128 :FPAV T0357 106 :RDEKFFEAV 1rxyA 132 :ADFECTTAL Number of specific fragments extracted= 7 number of extra gaps= 0 total=78 Number of alignments=17 # 1rxyA read from 1rxyA/merged-good-all-a2m # found chain 1rxyA in training set T0357 19 :LVTKEYISFLGG 1rxyA 44 :LASHREFTTWRA T0357 43 :EIKGESV 1rxyA 56 :ELDGKPV T0357 54 :LVFPGGKGSTVGSYVLLNLRKNGV 1rxyA 63 :IVCSTGIGGPSTSIAVEELAQLGI Number of specific fragments extracted= 3 number of extra gaps= 0 total=81 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qdlB/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1qdlB expands to /projects/compbio/data/pdb/1qdl.pdb.gz 1qdlB:# T0357 read from 1qdlB/merged-good-all-a2m # 1qdlB read from 1qdlB/merged-good-all-a2m # adding 1qdlB to template set # found chain 1qdlB in template set T0357 3 :KFACRAITRGR 1qdlB 98 :IRRARKVFHGK T0357 15 :EGEALV 1qdlB 109 :ISNIIL T0357 21 :TKEYISFLGGI 1qdlB 116 :NNSPLSLYYGI T0357 37 :IVKE 1qdlB 139 :VVDE T0357 59 :GK 1qdlB 143 :VH T0357 76 :GVAPKAIINKKTETIIAV 1qdlB 145 :RPLIVDAISAEDNEIMAI T0357 97 :MAE 1qdlB 163 :HHE T0357 100 :IPLVE 1qdlB 167 :YPIYG Number of specific fragments extracted= 8 number of extra gaps= 0 total=89 Number of alignments=19 # 1qdlB read from 1qdlB/merged-good-all-a2m # found chain 1qdlB in template set T0357 4 :FACRAITRGR 1qdlB 99 :RRARKVFHGK T0357 15 :EGEALVT 1qdlB 109 :ISNIILV T0357 22 :KEYISFLGGI 1qdlB 117 :NSPLSLYYGI T0357 36 :G 1qdlB 137 :S T0357 37 :IVKE 1qdlB 139 :VVDE T0357 49 :VA 1qdlB 143 :VH T0357 76 :GVAPKAIINKKTETIIA 1qdlB 145 :RPLIVDAISAEDNEIMA T0357 96 :AMAE 1qdlB 162 :IHHE T0357 100 :IPLVEV 1qdlB 167 :YPIYGV Number of specific fragments extracted= 9 number of extra gaps= 0 total=98 Number of alignments=20 # 1qdlB read from 1qdlB/merged-good-all-a2m # found chain 1qdlB in template set T0357 51 :GRILVFPGGKGS 1qdlB 47 :DRLIISPGPGTP T0357 63 :TVGSYVLLNLR 1qdlB 65 :GVSLDVIKYLG T0357 76 :GVAPKAIIN 1qdlB 76 :KRTPILGVC T0357 91 :IAVGAAMAEIP 1qdlB 85 :LGHQAIGYAFG T0357 106 :RD 1qdlB 96 :AK T0357 111 :FEAVKT 1qdlB 98 :IRRARK T0357 121 :VVNADEGY 1qdlB 104 :VFHGKISN T0357 132 :IELEHHHH 1qdlB 112 :IILVNNSP Number of specific fragments extracted= 8 number of extra gaps= 0 total=106 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ganA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2ganA expands to /projects/compbio/data/pdb/2gan.pdb.gz 2ganA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0357 read from 2ganA/merged-good-all-a2m # 2ganA read from 2ganA/merged-good-all-a2m # adding 2ganA to template set # found chain 2ganA in template set T0357 8 :AITRGRAEGEALVTKEYI 2ganA 72 :YQKDNRIIGTIALVYKRI T0357 33 :KETG 2ganA 90 :KEKG T0357 37 :IVKEDCEIKGESVAGRILVFPGGKGSTVGSYVLL 2ganA 96 :WVPEELMNEKVGLIEFFVVDPEFQGKGIGSTLLE T0357 71 :NLRKNGVAPKAIINKK 2ganA 134 :RLRSLGKDPYVVTFPN T0357 106 :RDEKFFEAVKTGDR 2ganA 150 :LEAYSYYYMKKGFR T0357 121 :VVNADEGYVELIELE 2ganA 164 :EIMRYKEFVILKFNH Number of specific fragments extracted= 6 number of extra gaps= 0 total=112 Number of alignments=22 # 2ganA read from 2ganA/merged-good-all-a2m # found chain 2ganA in template set T0357 7 :RAITRGRAEGEALVTKEYI 2ganA 71 :TYQKDNRIIGTIALVYKRI T0357 33 :KETGI 2ganA 90 :KEKGI T0357 38 :VKEDCEIKGESVAGRILVFPGGKGSTVGSYVLL 2ganA 97 :VPEELMNEKVGLIEFFVVDPEFQGKGIGSTLLE T0357 71 :NLRKNGVAPKAIINKKT 2ganA 134 :RLRSLGKDPYVVTFPNL T0357 107 :DEKFFEAVKTG 2ganA 151 :EAYSYYYMKKG T0357 129 :VELIELEHHH 2ganA 162 :FREIMRYKEF Number of specific fragments extracted= 6 number of extra gaps= 0 total=118 Number of alignments=23 # 2ganA read from 2ganA/merged-good-all-a2m # found chain 2ganA in template set T0357 8 :AITRGRAEGEALVTKEYI 2ganA 72 :YQKDNRIIGTIALVYKRI T0357 28 :LGGIDKETG 2ganA 94 :IWWVPEELM T0357 37 :IVKEDC 2ganA 113 :VVDPEF T0357 45 :KGESV 2ganA 119 :QGKGI T0357 61 :GSTVGSYVLLNLRKNGVAPKAIINKKTETIIAV 2ganA 124 :GSTLLEFAVKRLRSLGKDPYVVTFPNLEAYSYY T0357 102 :LVEV 2ganA 158 :MKKG T0357 111 :FEAV 2ganA 162 :FREI T0357 121 :VVNADEGYVE 2ganA 166 :MRYKEFVILK Number of specific fragments extracted= 8 number of extra gaps= 0 total=126 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1x83A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0357/1x83A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0357/1x83A/merged-good-all-a2m.gz for input Trying 1x83A/merged-good-all-a2m Error: Couldn't open file 1x83A/merged-good-all-a2m or 1x83A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q54A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0357/1q54A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0357/1q54A/merged-good-all-a2m.gz for input Trying 1q54A/merged-good-all-a2m Error: Couldn't open file 1q54A/merged-good-all-a2m or 1q54A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2etlA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0357/2etlA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0357/2etlA/merged-good-all-a2m.gz for input Trying 2etlA/merged-good-all-a2m Error: Couldn't open file 2etlA/merged-good-all-a2m or 2etlA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ppvA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0357/1ppvA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0357/1ppvA/merged-good-all-a2m.gz for input Trying 1ppvA/merged-good-all-a2m Error: Couldn't open file 1ppvA/merged-good-all-a2m or 1ppvA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vi4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vi4A expands to /projects/compbio/data/pdb/1vi4.pdb.gz 1vi4A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 187, because occupancy 0.5 <= existing 0.500 in 1vi4A Skipped atom 189, because occupancy 0.500 <= existing 0.500 in 1vi4A Skipped atom 191, because occupancy 0.500 <= existing 0.500 in 1vi4A Skipped atom 193, because occupancy 0.500 <= existing 0.500 in 1vi4A Skipped atom 195, because occupancy 0.500 <= existing 0.500 in 1vi4A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0357 read from 1vi4A/merged-good-all-a2m # 1vi4A read from 1vi4A/merged-good-all-a2m # adding 1vi4A to template set # found chain 1vi4A in template set T0357 46 :GESVAGRILVFP 1vi4A 54 :SQNGKGKVLVVD T0357 59 :GKGST 1vi4A 66 :GHGSC T0357 64 :VGSYVLLNLRKNGVA 1vi4A 75 :MGDQLAILAIKNDWE T0357 89 :TIIAVGAA 1vi4A 90 :GVIIYGAV T0357 100 :IPLVEVRD 1vi4A 110 :IKALGTSP T0357 113 :AVKTGDRVVVNADEGYV 1vi4A 138 :IVEPGDYLYADWNGILM Number of specific fragments extracted= 6 number of extra gaps= 0 total=132 Number of alignments=25 # 1vi4A read from 1vi4A/merged-good-all-a2m # found chain 1vi4A in template set T0357 47 :ESVAGRILVFP 1vi4A 55 :QNGKGKVLVVD T0357 59 :GKGST 1vi4A 66 :GHGSC T0357 64 :VGSYVLLNLRKNGV 1vi4A 75 :MGDQLAILAIKNDW T0357 88 :ETIIAVGAA 1vi4A 89 :EGVIIYGAV T0357 101 :PLVEVRD 1vi4A 130 :VTLTMQN T0357 112 :EAVKTGDRVVVNADEGYVE 1vi4A 137 :QIVEPGDYLYADWNGILMS T0357 133 :E 1vi4A 156 :E Number of specific fragments extracted= 7 number of extra gaps= 0 total=139 Number of alignments=26 # 1vi4A read from 1vi4A/merged-good-all-a2m # found chain 1vi4A in template set T0357 47 :ESVAGRILVFP 1vi4A 55 :QNGKGKVLVVD T0357 59 :GKGST 1vi4A 66 :GHGSC T0357 65 :GSYVLLNLRKNGVA 1vi4A 76 :GDQLAILAIKNDWE T0357 80 :KAIINKKTETIIAV 1vi4A 90 :GVIIYGAVRDVVAM T0357 94 :GAAMAEIPLVEVRDEKFF 1vi4A 109 :GIKALGTSPFKTEKRGAG T0357 112 :EAVKTGDRVVVNADEGYV 1vi4A 137 :QIVEPGDYLYADWNGILM Number of specific fragments extracted= 6 number of extra gaps= 0 total=145 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1r67A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0357/1r67A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0357/1r67A/merged-good-all-a2m.gz for input Trying 1r67A/merged-good-all-a2m Error: Couldn't open file 1r67A/merged-good-all-a2m or 1r67A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qmeA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1qmeA expands to /projects/compbio/data/pdb/1qme.pdb.gz 1qmeA:# T0357 read from 1qmeA/merged-good-all-a2m # 1qmeA read from 1qmeA/merged-good-all-a2m # adding 1qmeA to template set # found chain 1qmeA in template set Number of specific fragments extracted= 0 number of extra gaps= 0 total=145 # 1qmeA read from 1qmeA/merged-good-all-a2m # found chain 1qmeA in template set T0357 59 :GKGSTVGSYVLLNLRKNGVAP 1qmeA 334 :EPGSTMKVMMLAAAIDNNTFP T0357 116 :TGDRVV 1qmeA 355 :GGEVFN T0357 122 :VNADEGYV 1qmeA 364 :LKIADATI Number of specific fragments extracted= 3 number of extra gaps= 0 total=148 Number of alignments=28 # 1qmeA read from 1qmeA/merged-good-all-a2m # found chain 1qmeA in template set T0357 17 :EALVTKE 1qmeA 292 :TLVSAKT T0357 24 :YISFLGGIDKETG 1qmeA 303 :ATTQRPTFDADTK T0357 37 :IVKEDCEIK 1qmeA 317 :GITEDFVWR T0357 57 :PGGKGSTVGSYVLLNLRKNGVAP 1qmeA 332 :NYEPGSTMKVMMLAAAIDNNTFP T0357 105 :VRDEKFFEAVK 1qmeA 355 :GGEVFNSSELK Number of specific fragments extracted= 5 number of extra gaps= 0 total=153 Number of alignments=29 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nbwA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nbwA expands to /projects/compbio/data/pdb/1nbw.pdb.gz 1nbwA:# T0357 read from 1nbwA/merged-good-all-a2m # 1nbwA read from 1nbwA/merged-good-all-a2m # adding 1nbwA to template set # found chain 1nbwA in template set T0357 12 :GRAEGEAL 1nbwA 109 :GVGVGTTI T0357 24 :YISFLGGIDKETG 1nbwA 117 :ALGRLATLPAAQY T0357 50 :AGRILVFPGGKGSTVGSYVLLNLRKNGVAPKAIINKKT 1nbwA 131 :EGWIVLIDDAVDFLDAVWWLNEALDRGINVVAAILKKD T0357 100 :IPLVEVRD 1nbwA 181 :LPVVDEVT T0357 110 :FFEAVKTGDRVVVN 1nbwA 189 :LLEQVPEGVMAAVE T0357 124 :ADE 1nbwA 205 :APG Number of specific fragments extracted= 6 number of extra gaps= 0 total=159 Number of alignments=30 # 1nbwA read from 1nbwA/merged-good-all-a2m # found chain 1nbwA in template set T0357 50 :AGRILVFPGGKGSTVGSYVLLNLRKNGVAPKAIINKKTE 1nbwA 131 :EGWIVLIDDAVDFLDAVWWLNEALDRGINVVAAILKKDD T0357 89 :TIIA 1nbwA 180 :TLPV T0357 93 :VGAAMAE 1nbwA 199 :AAVEVAA T0357 106 :RDEKFFEAVK 1nbwA 225 :LSPEETQAIV T0357 116 :TGDR 1nbwA 241 :IGNR T0357 120 :VVVNADEGYVELIELEH 1nbwA 247 :VVLKTPQGDVQSRVIPA Number of specific fragments extracted= 6 number of extra gaps= 0 total=165 Number of alignments=31 # 1nbwA read from 1nbwA/merged-good-all-a2m # found chain 1nbwA in template set T0357 47 :ESVAGRILVFPGGKGSTVGSYVLLNLRKNGVAPKAIINKKTETIIAV 1nbwA 128 :QYAEGWIVLIDDAVDFLDAVWWLNEALDRGINVVAAILKKDDGVLVN T0357 96 :AMAEIPLVE 1nbwA 183 :VVDEVTLLE T0357 113 :AVKTGDRVVV 1nbwA 192 :QVPEGVMAAV Number of specific fragments extracted= 3 number of extra gaps= 0 total=168 Number of alignments=32 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1v7lA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1v7lA expands to /projects/compbio/data/pdb/1v7l.pdb.gz 1v7lA:# T0357 read from 1v7lA/merged-good-all-a2m # 1v7lA read from 1v7lA/merged-good-all-a2m # adding 1v7lA to template set # found chain 1v7lA in template set T0357 13 :RAEGEALVTKEYISFLGGIDKETG 1v7lA 2 :ITTGKVWKFGDDISTDEITPGRYN T0357 39 :KEDC 1v7lA 27 :TKDP T0357 50 :AGRILVFPGGKG 1v7lA 51 :PGDVVVAGKNFG T0357 62 :ST 1v7lA 65 :SS T0357 64 :VGSYVLLNL 1v7lA 69 :SAALALKAL T0357 76 :GV 1v7lA 78 :GI T0357 94 :GAAMAE 1v7lA 80 :AGVIAE T0357 100 :IPLVEVRDEK 1v7lA 100 :IPLLLGKTEG T0357 114 :VKTGDRVVVNADEGYV 1v7lA 110 :LKDGDLVTVNWETGEV T0357 130 :ELIELEHHH 1v7lA 130 :EILMFEPLE Number of specific fragments extracted= 10 number of extra gaps= 0 total=178 Number of alignments=33 # 1v7lA read from 1v7lA/merged-good-all-a2m # found chain 1v7lA in template set T0357 50 :AGRILVFPG 1v7lA 51 :PGDVVVAGK T0357 59 :GKGST 1v7lA 62 :GIGSS T0357 64 :VGSYVLLNL 1v7lA 69 :SAALALKAL T0357 76 :GVA 1v7lA 78 :GIA T0357 95 :AAMAE 1v7lA 81 :GVIAE T0357 100 :IPLVEVRDE 1v7lA 100 :IPLLLGKTE T0357 113 :AVKTGDRVVVNADEGYVE 1v7lA 109 :GLKDGDLVTVNWETGEVR T0357 131 :LIELEHHH 1v7lA 131 :ILMFEPLE Number of specific fragments extracted= 8 number of extra gaps= 0 total=186 Number of alignments=34 # 1v7lA read from 1v7lA/merged-good-all-a2m # found chain 1v7lA in template set T0357 50 :AGRILVFPG 1v7lA 51 :PGDVVVAGK T0357 59 :GKGST 1v7lA 62 :GIGSS T0357 64 :VGSYVLLNL 1v7lA 69 :SAALALKAL T0357 79 :PKAIINKKTETIIAVGAAMAEIPLVEVR 1v7lA 79 :IAGVIAESFGRIFYRNAINIGIPLLLGK T0357 111 :FEAVKTGDRVVVNADEGYVEL 1v7lA 107 :TEGLKDGDLVTVNWETGEVRK Number of specific fragments extracted= 5 number of extra gaps= 0 total=191 Number of alignments=35 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bsxA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bsxA expands to /projects/compbio/data/pdb/2bsx.pdb.gz 2bsxA:# T0357 read from 2bsxA/merged-good-all-a2m # 2bsxA read from 2bsxA/merged-good-all-a2m # adding 2bsxA to template set # found chain 2bsxA in template set Warning: unaligning (T0357)E15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bsxA)V50 Warning: unaligning (T0357)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bsxA)V50 Warning: unaligning (T0357)G61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bsxA)S68 Warning: unaligning (T0357)S62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bsxA)S68 Warning: unaligning (T0357)P101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bsxA)A128 Warning: unaligning (T0357)L102 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bsxA)A128 T0357 4 :FACRAITRGRA 2bsxA 38 :YVDLAYNREYK T0357 17 :EALV 2bsxA 51 :ECHY T0357 45 :KGES 2bsxA 55 :KGQK T0357 53 :ILVFPGGK 2bsxA 59 :FLCVSHGV T0357 63 :TVGSYVLLNLRKNGV 2bsxA 69 :AGCAVCFEELCQNGA T0357 80 :KAIINK 2bsxA 84 :KVIIRA T0357 86 :KTETIIAVGAAMAE 2bsxA 101 :KRGDICICNAAVRE T0357 100 :I 2bsxA 126 :F T0357 103 :V 2bsxA 129 :V T0357 106 :RDEKFFEAVK 2bsxA 130 :GDFDVYDTLN Number of specific fragments extracted= 10 number of extra gaps= 3 total=201 Number of alignments=36 # 2bsxA read from 2bsxA/merged-good-all-a2m # found chain 2bsxA in template set Warning: unaligning (T0357)E15 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bsxA)V50 Warning: unaligning (T0357)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bsxA)V50 Warning: unaligning (T0357)G61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bsxA)S68 Warning: unaligning (T0357)S62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bsxA)S68 Warning: unaligning (T0357)P101 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bsxA)A128 Warning: unaligning (T0357)L102 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bsxA)A128 T0357 4 :FACRAITRGRA 2bsxA 38 :YVDLAYNREYK T0357 17 :EALV 2bsxA 51 :ECHY T0357 45 :KGE 2bsxA 55 :KGQ T0357 52 :RILVFPGGK 2bsxA 58 :KFLCVSHGV T0357 63 :TVGSYVLLNLRKNGV 2bsxA 69 :AGCAVCFEELCQNGA T0357 80 :KAIINK 2bsxA 84 :KVIIRA T0357 86 :KTETIIAVGAAMAE 2bsxA 101 :KRGDICICNAAVRE T0357 100 :I 2bsxA 126 :F T0357 103 :V 2bsxA 129 :V T0357 106 :RDEKFFEAVK 2bsxA 130 :GDFDVYDTLN Number of specific fragments extracted= 10 number of extra gaps= 3 total=211 Number of alignments=37 # 2bsxA read from 2bsxA/merged-good-all-a2m # found chain 2bsxA in template set Warning: unaligning (T0357)G16 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bsxA)V50 Warning: unaligning (T0357)E17 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bsxA)V50 Warning: unaligning (T0357)G61 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bsxA)S68 Warning: unaligning (T0357)S62 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bsxA)S68 T0357 7 :RAITRGRAE 2bsxA 40 :DLAYNREYK T0357 18 :ALVT 2bsxA 51 :ECHY T0357 45 :KGESV 2bsxA 55 :KGQKF T0357 54 :LVFPGGK 2bsxA 60 :LCVSHGV T0357 63 :TVGSYVLLNLRKNGV 2bsxA 69 :AGCAVCFEELCQNGA T0357 80 :KAIIN 2bsxA 84 :KVIIR Number of specific fragments extracted= 6 number of extra gaps= 2 total=217 Number of alignments=38 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i9aA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1i9aA expands to /projects/compbio/data/pdb/1i9a.pdb.gz 1i9aA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0357 read from 1i9aA/merged-good-all-a2m # 1i9aA read from 1i9aA/merged-good-all-a2m # adding 1i9aA to template set # found chain 1i9aA in template set T0357 116 :TGDRVVVNADEGYVELI 1i9aA 100 :PDFRYRATDPSGIVENE Number of specific fragments extracted= 1 number of extra gaps= 0 total=218 # 1i9aA read from 1i9aA/merged-good-all-a2m # found chain 1i9aA in template set T0357 116 :TGDRVVVNADEGYVELI 1i9aA 100 :PDFRYRATDPSGIVENE Number of specific fragments extracted= 1 number of extra gaps= 0 total=219 # 1i9aA read from 1i9aA/merged-good-all-a2m # found chain 1i9aA in template set T0357 106 :RDEKFFEAVKTGDRVVVNADEGYVELIE 1i9aA 90 :VEITPPESIYPDFRYRATDPSGIVENEV Number of specific fragments extracted= 1 number of extra gaps= 0 total=220 Number of alignments=39 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0357//projects/compbio/experiments/protein-predict/casp7/T0357/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0357//projects/compbio/experiments/protein-predict/casp7/T0357/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0357/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0357/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0357)L69.CB, (T0357)I82.CB) [> 4.1452 = 6.9086 < 8.9812] w=1.0000 to align # Constraint # added constraint: constraint((T0357)R52.CB, (T0357)V77.CB) [> 4.0574 = 6.7624 < 8.7911] w=0.9166 to align # Constraint # added constraint: constraint((T0357)R52.CB, (T0357)A78.CB) [> 3.3192 = 5.5321 < 7.1917] w=0.8316 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)K80.CB) [> 3.8852 = 6.4753 < 8.4179] w=0.8246 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)A81.CB) [> 3.8065 = 6.3442 < 8.2475] w=0.8246 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)I82.CB) [> 3.5824 = 5.9707 < 7.7620] w=0.8246 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)I82.CB) [> 3.8576 = 6.4293 < 8.3581] w=0.8246 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)I83.CB) [> 4.0582 = 6.7637 < 8.7928] w=0.8246 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)N84.CB) [> 3.4988 = 5.8313 < 7.5807] w=0.8246 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)V77.CB) [> 3.6967 = 6.1612 < 8.0096] w=0.7952 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)V68.CB) [> 3.9438 = 6.5730 < 8.5449] w=0.7860 to align # Constraint # added constraint: constraint((T0357)G51.CA, (T0357)A78.CB) [> 3.1343 = 5.2239 < 6.7910] w=0.7481 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)G65.CA) [> 4.0532 = 6.7553 < 8.7819] w=0.7261 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)A78.CB) [> 3.7778 = 6.2963 < 8.1852] w=0.7102 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)P79.CB) [> 3.8770 = 6.4617 < 8.4002] w=0.6970 to align # Constraint # added constraint: constraint((T0357)L69.CB, (T0357)P79.CB) [> 3.4862 = 5.8103 < 7.5534] w=0.6849 to align # Constraint # added constraint: constraint((T0357)R52.CB, (T0357)K80.CB) [> 3.9193 = 6.5321 < 8.4917] w=0.6845 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)P79.CB) [> 3.9875 = 6.6458 < 8.6396] w=0.6270 to align # Constraint # added constraint: constraint((T0357)R52.CB, (T0357)P79.CB) [> 3.7964 = 6.3274 < 8.2256] w=0.6259 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)I83.CB) [> 3.6043 = 6.0071 < 7.8093] w=0.6202 to align # Constraint # added constraint: constraint((T0357)I83.CB, (T0357)V114.CB) [> 4.1112 = 6.8520 < 8.9077] w=0.6096 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)V68.CB) [> 4.1176 = 6.8626 < 8.9214] w=0.6019 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)G65.CA) [> 3.9501 = 6.5835 < 8.5586] w=0.6019 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)V120.CB) [> 3.2445 = 5.4075 < 7.0298] w=0.5931 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)V122.CB) [> 3.9098 = 6.5163 < 8.4712] w=0.5931 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)V114.CB) [> 3.0869 = 5.1449 < 6.6884] w=0.5931 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)A81.CB) [> 3.6299 = 6.0498 < 7.8647] w=0.5917 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)L72.CB) [> 4.3893 = 7.3155 < 9.5101] w=0.5914 to align # Constraint # added constraint: constraint((T0357)A50.CB, (T0357)G76.CA) [> 2.7634 = 4.6056 < 5.9873] w=0.5841 to align # Constraint # added constraint: constraint((T0357)G51.CA, (T0357)G76.CA) [> 4.3526 = 7.2544 < 9.4306] w=0.5819 to align # Constraint # added constraint: constraint((T0357)V114.CB, (T0357)V129.CB) [> 4.2479 = 7.0799 < 9.2038] w=0.5804 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)L72.CB) [> 4.2058 = 7.0096 < 9.1125] w=0.5727 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)V68.CB) [> 4.6431 = 7.7386 < 10.0601] w=0.5727 to align # Constraint # added constraint: constraint((T0357)G58.CA, (T0357)V68.CB) [> 2.6974 = 4.4957 < 5.8444] w=0.5727 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)L69.CB) [> 4.0041 = 6.6735 < 8.6756] w=0.5674 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)K85.CB) [> 4.1579 = 6.9298 < 9.0087] w=0.5608 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)L54.CB) [> 4.0262 = 6.7104 < 8.7235] w=0.5596 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)I83.CB) [> 3.9279 = 6.5464 < 8.5103] w=0.5503 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)K80.CB) [> 3.7864 = 6.3107 < 8.2039] w=0.5462 to align # Constraint # added constraint: constraint((T0357)A50.CB, (T0357)A78.CB) [> 4.0313 = 6.7188 < 8.7344] w=0.5451 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)I82.CB) [> 3.7589 = 6.2648 < 8.1443] w=0.5414 to align # Constraint # added constraint: constraint((T0357)G94.CA, (T0357)V103.CB) [> 3.7038 = 6.1731 < 8.0250] w=0.5185 to align # Constraint # added constraint: constraint((T0357)A14.CB, (T0357)F56.CB) [> 4.1417 = 6.9028 < 8.9737] w=0.4955 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)A81.CB) [> 4.1046 = 6.8411 < 8.8934] w=0.4876 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)L69.CB) [> 2.8961 = 4.8268 < 6.2749] w=0.4862 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)L72.CB) [> 3.7401 = 6.2335 < 8.1036] w=0.4862 to align # Constraint # added constraint: constraint((T0357)G58.CA, (T0357)N84.CB) [> 4.3201 = 7.2002 < 9.3603] w=0.4837 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)V55.CB) [> 3.7084 = 6.1807 < 8.0349] w=0.4660 to align # Constraint # added constraint: constraint((T0357)V120.CB, (T0357)V129.CB) [> 3.2927 = 5.4879 < 7.1343] w=0.4647 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)I53.CB) [> 3.3046 = 5.5076 < 7.1599] w=0.4561 to align # Constraint # added constraint: constraint((T0357)G94.CA, (T0357)F111.CB) [> 3.3534 = 5.5890 < 7.2658] w=0.4517 to align # Constraint # added constraint: constraint((T0357)G94.CA, (T0357)R106.CB) [> 2.7328 = 4.5547 < 5.9212] w=0.4517 to align # Constraint # added constraint: constraint((T0357)L72.CB, (T0357)I82.CB) [> 3.9178 = 6.5297 < 8.4886] w=0.4384 to align # Constraint # added constraint: constraint((T0357)V121.CB, (T0357)E130.CB) [> 3.5741 = 5.9568 < 7.7438] w=0.4330 to align # Constraint # added constraint: constraint((T0357)E17.CB, (T0357)L54.CB) [> 3.7390 = 6.2316 < 8.1011] w=0.4317 to align # Constraint # added constraint: constraint((T0357)I83.CB, (T0357)V103.CB) [> 3.0257 = 5.0429 < 6.5558] w=0.4241 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)L72.CB) [> 3.8319 = 6.3865 < 8.3024] w=0.4163 to align # Constraint # added constraint: constraint((T0357)G58.CA, (T0357)K85.CB) [> 3.4736 = 5.7894 < 7.5262] w=0.4138 to align # Constraint # added constraint: constraint((T0357)L19.CB, (T0357)V55.CB) [> 3.3788 = 5.6314 < 7.3208] w=0.4023 to align # Constraint # added constraint: constraint((T0357)L19.CB, (T0357)L54.CB) [> 3.7656 = 6.2760 < 8.1588] w=0.4023 to align # Constraint # added constraint: constraint((T0357)L69.CB, (T0357)I100.CB) [> 3.8387 = 6.3978 < 8.3171] w=0.3965 to align # Constraint # added constraint: constraint((T0357)E17.CB, (T0357)I53.CB) [> 4.2987 = 7.1646 < 9.3140] w=0.3933 to align # Constraint # added constraint: constraint((T0357)A8.CB, (T0357)A18.CB) [> 3.8688 = 6.4480 < 8.3824] w=0.3876 to align # Constraint # added constraint: constraint((T0357)S48.CB, (T0357)G76.CA) [> 4.1437 = 6.9062 < 8.9781] w=0.3870 to align # Constraint # added constraint: constraint((T0357)A92.CB, (T0357)F111.CB) [> 3.8531 = 6.4219 < 8.3485] w=0.3818 to align # Constraint # added constraint: constraint((T0357)A92.CB, (T0357)V114.CB) [> 3.0379 = 5.0631 < 6.5820] w=0.3818 to align # Constraint # added constraint: constraint((T0357)G59.CA, (T0357)V68.CB) [> 4.6084 = 7.6807 < 9.9850] w=0.3815 to align # Constraint # added constraint: constraint((T0357)R73.CB, (T0357)I82.CB) [> 4.4702 = 7.4504 < 9.6855] w=0.3798 to align # Constraint # added constraint: constraint((T0357)V20.CB, (T0357)E47.CB) [> 4.1392 = 6.8987 < 8.9683] w=0.3798 to align # Constraint # added constraint: constraint((T0357)A14.CB, (T0357)P57.CB) [> 3.4016 = 5.6694 < 7.3702] w=0.3798 to align # Constraint # added constraint: constraint((T0357)R13.CB, (T0357)G59.CA) [> 3.3380 = 5.5634 < 7.2325] w=0.3798 to align # Constraint # added constraint: constraint((T0357)R7.CB, (T0357)A18.CB) [> 4.6675 = 7.7791 < 10.1129] w=0.3778 to align # Constraint # added constraint: constraint((T0357)V120.CB, (T0357)E130.CB) [> 4.1932 = 6.9886 < 9.0852] w=0.3751 to align # Constraint # added constraint: constraint((T0357)G51.CA, (T0357)V77.CB) [> 3.7777 = 6.2962 < 8.1851] w=0.3747 to align # Constraint # added constraint: constraint((T0357)R7.CB, (T0357)E17.CB) [> 3.3163 = 5.5272 < 7.1854] w=0.3739 to align # Constraint # added constraint: constraint((T0357)E15.CB, (T0357)F56.CB) [> 3.5738 = 5.9564 < 7.7433] w=0.3680 to align # Constraint # added constraint: constraint((T0357)A8.CB, (T0357)E17.CB) [> 4.0332 = 6.7220 < 8.7386] w=0.3621 to align # Constraint # added constraint: constraint((T0357)P79.CB, (T0357)I100.CB) [> 4.1033 = 6.8389 < 8.8906] w=0.3599 to align # Constraint # added constraint: constraint((T0357)K80.CB, (T0357)P101.CB) [> 4.3473 = 7.2455 < 9.4191] w=0.3599 to align # Constraint # added constraint: constraint((T0357)A81.CB, (T0357)I100.CB) [> 3.9577 = 6.5961 < 8.5750] w=0.3599 to align # Constraint # added constraint: constraint((T0357)A81.CB, (T0357)P101.CB) [> 3.2494 = 5.4157 < 7.0404] w=0.3599 to align # Constraint # added constraint: constraint((T0357)A81.CB, (T0357)L102.CB) [> 3.8761 = 6.4602 < 8.3983] w=0.3599 to align # Constraint # added constraint: constraint((T0357)A81.CB, (T0357)V103.CB) [> 3.6877 = 6.1462 < 7.9901] w=0.3599 to align # Constraint # added constraint: constraint((T0357)I82.CB, (T0357)L102.CB) [> 3.2053 = 5.3422 < 6.9449] w=0.3599 to align # Constraint # added constraint: constraint((T0357)I82.CB, (T0357)V103.CB) [> 3.9007 = 6.5012 < 8.4515] w=0.3599 to align # Constraint # added constraint: constraint((T0357)I83.CB, (T0357)L102.CB) [> 4.3461 = 7.2435 < 9.4165] w=0.3599 to align # Constraint # added constraint: constraint((T0357)N84.CB, (T0357)V105.CB) [> 4.1596 = 6.9327 < 9.0125] w=0.3599 to align # Constraint # added constraint: constraint((T0357)N84.CB, (T0357)V103.CB) [> 4.2477 = 7.0796 < 9.2034] w=0.3564 to align # Constraint # added constraint: constraint((T0357)I82.CB, (T0357)A92.CB) [> 2.7119 = 4.5198 < 5.8758] w=0.3553 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)P79.CB) [> 3.0953 = 5.1589 < 6.7066] w=0.3486 to align # Constraint # added constraint: constraint((T0357)G51.CA, (T0357)P79.CB) [> 4.2651 = 7.1086 < 9.2411] w=0.3483 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)K85.CB) [> 3.7627 = 6.2713 < 8.1526] w=0.3475 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)I82.CB) [> 4.1024 = 6.8373 < 8.8885] w=0.3475 to align # Constraint # added constraint: constraint((T0357)Y24.CB, (T0357)P57.CB) [> 4.0784 = 6.7974 < 8.8366] w=0.3430 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)F56.CB) [> 3.4422 = 5.7369 < 7.4580] w=0.3430 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)P57.CB) [> 3.6902 = 6.1503 < 7.9954] w=0.3430 to align # Constraint # added constraint: constraint((T0357)V49.CB, (T0357)G76.CA) [> 3.3815 = 5.6359 < 7.3266] w=0.3413 to align # Constraint # added constraint: constraint((T0357)G61.CA, (T0357)N84.CB) [> 3.8533 = 6.4221 < 8.3487] w=0.3410 to align # Constraint # added constraint: constraint((T0357)K60.CB, (T0357)N84.CB) [> 3.7480 = 6.2466 < 8.1206] w=0.3410 to align # Constraint # added constraint: constraint((T0357)V103.CB, (T0357)V122.CB) [> 4.0619 = 6.7698 < 8.8007] w=0.3389 to align # Constraint # added constraint: constraint((T0357)I82.CB, (T0357)I91.CB) [> 3.5273 = 5.8788 < 7.6425] w=0.3384 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)I83.CB) [> 3.8831 = 6.4718 < 8.4133] w=0.3370 to align # Constraint # added constraint: constraint((T0357)G51.CA, (T0357)K80.CB) [> 3.1597 = 5.2662 < 6.8461] w=0.3370 to align # Constraint # added constraint: constraint((T0357)E17.CB, (T0357)R52.CB) [> 3.2401 = 5.4002 < 7.0202] w=0.3295 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)R52.CB) [> 4.1937 = 6.9896 < 9.0865] w=0.3295 to align # Constraint # added constraint: constraint((T0357)L19.CB, (T0357)I53.CB) [> 4.1209 = 6.8682 < 8.9286] w=0.3286 to align # Constraint # added constraint: constraint((T0357)K85.CB, (T0357)F110.CB) [> 3.9837 = 6.6396 < 8.6314] w=0.3221 to align # Constraint # added constraint: constraint((T0357)A92.CB, (T0357)K115.CB) [> 3.4395 = 5.7325 < 7.4523] w=0.3175 to align # Constraint # added constraint: constraint((T0357)V77.CB, (T0357)I100.CB) [> 4.2710 = 7.1183 < 9.2538] w=0.3115 to align # Constraint # added constraint: constraint((T0357)I82.CB, (T0357)A95.CB) [> 4.3131 = 7.1885 < 9.3451] w=0.3062 to align # Constraint # added constraint: constraint((T0357)G16.CA, (T0357)F56.CB) [> 2.9252 = 4.8753 < 6.3379] w=0.3042 to align # Constraint # added constraint: constraint((T0357)G16.CA, (T0357)V55.CB) [> 3.6258 = 6.0431 < 7.8560] w=0.3042 to align # Constraint # added constraint: constraint((T0357)G16.CA, (T0357)L54.CB) [> 3.6517 = 6.0862 < 7.9120] w=0.3042 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)N84.CB) [> 2.9476 = 4.9126 < 6.3864] w=0.2959 to align # Constraint # added constraint: constraint((T0357)I83.CB, (T0357)V105.CB) [> 3.9443 = 6.5738 < 8.5459] w=0.2957 to align # Constraint # added constraint: constraint((T0357)N84.CB, (T0357)L102.CB) [> 3.9181 = 6.5301 < 8.4892] w=0.2922 to align # Constraint # added constraint: constraint((T0357)N84.CB, (T0357)E104.CB) [> 3.6490 = 6.0817 < 7.9062] w=0.2922 to align # Constraint # added constraint: constraint((T0357)K85.CB, (T0357)V105.CB) [> 3.3211 = 5.5352 < 7.1957] w=0.2922 to align # Constraint # added constraint: constraint((T0357)A81.CB, (T0357)A92.CB) [> 3.3266 = 5.5443 < 7.2076] w=0.2911 to align # Constraint # added constraint: constraint((T0357)K80.CB, (T0357)V122.CB) [> 4.0956 = 6.8260 < 8.8738] w=0.2833 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)G59.CA) [> 4.3810 = 7.3017 < 9.4922] w=0.2788 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)I83.CB) [> 3.6690 = 6.1150 < 7.9495] w=0.2763 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)L69.CB) [> 3.7038 = 6.1729 < 8.0248] w=0.2741 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)S66.CB) [> 3.8053 = 6.3422 < 8.2449] w=0.2741 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)A92.CB) [> 3.4752 = 5.7919 < 7.5295] w=0.2722 to align # Constraint # added constraint: constraint((T0357)V49.CB, (T0357)A78.CB) [> 3.6898 = 6.1497 < 7.9947] w=0.2722 to align # Constraint # added constraint: constraint((T0357)G59.CA, (T0357)N84.CB) [> 3.1103 = 5.1838 < 6.7389] w=0.2699 to align # Constraint # added constraint: constraint((T0357)A92.CB, (T0357)V103.CB) [> 4.2947 = 7.1578 < 9.3051] w=0.2667 to align # Constraint # added constraint: constraint((T0357)V93.CB, (T0357)V103.CB) [> 3.9312 = 6.5520 < 8.5176] w=0.2645 to align # Constraint # added constraint: constraint((T0357)S66.CB, (T0357)I100.CB) [> 3.4779 = 5.7965 < 7.5355] w=0.2576 to align # Constraint # added constraint: constraint((T0357)L70.CB, (T0357)I100.CB) [> 3.1711 = 5.2853 < 6.8708] w=0.2576 to align # Constraint # added constraint: constraint((T0357)P101.CB, (T0357)A124.CB) [> 2.3199 = 3.8664 < 5.0264] w=0.2576 to align # Constraint # added constraint: constraint((T0357)V103.CB, (T0357)A124.CB) [> 4.2256 = 7.0427 < 9.1555] w=0.2576 to align # Constraint # added constraint: constraint((T0357)V103.CB, (T0357)G127.CA) [> 3.3542 = 5.5904 < 7.2675] w=0.2576 to align # Constraint # added constraint: constraint((T0357)V103.CB, (T0357)V129.CB) [> 4.2881 = 7.1468 < 9.2908] w=0.2576 to align # Constraint # added constraint: constraint((T0357)V105.CB, (T0357)G127.CA) [> 4.7531 = 7.9218 < 10.2983] w=0.2576 to align # Constraint # added constraint: constraint((T0357)L28.CB, (T0357)L54.CB) [> 4.3301 = 7.2168 < 9.3819] w=0.2571 to align # Constraint # added constraint: constraint((T0357)S26.CB, (T0357)P57.CB) [> 3.2165 = 5.3608 < 6.9690] w=0.2571 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)V68.CB) [> 3.5303 = 5.8838 < 7.6490] w=0.2571 to align # Constraint # added constraint: constraint((T0357)L19.CB, (T0357)L28.CB) [> 3.6497 = 6.0828 < 7.9076] w=0.2571 to align # Constraint # added constraint: constraint((T0357)I83.CB, (T0357)F110.CB) [> 3.8351 = 6.3919 < 8.3094] w=0.2532 to align # Constraint # added constraint: constraint((T0357)A81.CB, (T0357)F110.CB) [> 3.8147 = 6.3579 < 8.2653] w=0.2532 to align # Constraint # added constraint: constraint((T0357)A8.CB, (T0357)L54.CB) [> 4.4464 = 7.4106 < 9.6338] w=0.2523 to align # Constraint # added constraint: constraint((T0357)R13.CB, (T0357)K60.CB) [> 4.6627 = 7.7712 < 10.1026] w=0.2523 to align # Constraint # added constraint: constraint((T0357)R13.CB, (T0357)V64.CB) [> 4.0126 = 6.6876 < 8.6939] w=0.2523 to align # Constraint # added constraint: constraint((T0357)A14.CB, (T0357)G59.CA) [> 4.4914 = 7.4857 < 9.7314] w=0.2523 to align # Constraint # added constraint: constraint((T0357)A14.CB, (T0357)V68.CB) [> 3.3772 = 5.6287 < 7.3173] w=0.2523 to align # Constraint # added constraint: constraint((T0357)E15.CB, (T0357)P57.CB) [> 2.9350 = 4.8916 < 6.3591] w=0.2523 to align # Constraint # added constraint: constraint((T0357)T21.CB, (T0357)K45.CB) [> 2.9237 = 4.8729 < 6.3348] w=0.2523 to align # Constraint # added constraint: constraint((T0357)T21.CB, (T0357)E47.CB) [> 3.4148 = 5.6914 < 7.3988] w=0.2523 to align # Constraint # added constraint: constraint((T0357)R7.CB, (T0357)G16.CA) [> 4.0931 = 6.8218 < 8.8684] w=0.2464 to align # Constraint # added constraint: constraint((T0357)V38.CB, (T0357)V49.CB) [> 3.9148 = 6.5247 < 8.4821] w=0.2435 to align # Constraint # added constraint: constraint((T0357)L69.CB, (T0357)A96.CB) [> 3.9562 = 6.5936 < 8.5717] w=0.2416 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)A96.CB) [> 4.4619 = 7.4365 < 9.6675] w=0.2416 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)A95.CB) [> 4.0463 = 6.7438 < 8.7670] w=0.2394 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)A96.CB) [> 4.1830 = 6.9717 < 9.0632] w=0.2394 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)M97.CB) [> 4.1681 = 6.9469 < 9.0309] w=0.2394 to align # Constraint # added constraint: constraint((T0357)M97.CB, (T0357)V122.CB) [> 4.2037 = 7.0062 < 9.1080] w=0.2359 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)A95.CB) [> 3.5554 = 5.9256 < 7.7033] w=0.2359 to align # Constraint # added constraint: constraint((T0357)A92.CB, (T0357)L102.CB) [> 3.4763 = 5.7938 < 7.5319] w=0.2299 to align # Constraint # added constraint: constraint((T0357)K80.CB, (T0357)A96.CB) [> 4.0482 = 6.7470 < 8.7711] w=0.2260 to align # Constraint # added constraint: constraint((T0357)I82.CB, (T0357)A96.CB) [> 2.8182 = 4.6969 < 6.1060] w=0.2203 to align # Constraint # added constraint: constraint((T0357)G94.CA, (T0357)V122.CB) [> 4.4672 = 7.4453 < 9.6788] w=0.2191 to align # Constraint # added constraint: constraint((T0357)K85.CB, (T0357)E104.CB) [> 4.2975 = 7.1625 < 9.3113] w=0.2177 to align # Constraint # added constraint: constraint((T0357)T87.CB, (T0357)E104.CB) [> 4.0511 = 6.7518 < 8.7773] w=0.2177 to align # Constraint # added constraint: constraint((T0357)I83.CB, (T0357)V122.CB) [> 4.3174 = 7.1956 < 9.3543] w=0.2142 to align # Constraint # added constraint: constraint((T0357)A81.CB, (T0357)V122.CB) [> 2.8794 = 4.7990 < 6.2387] w=0.2142 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)N84.CB) [> 4.3552 = 7.2587 < 9.4363] w=0.2135 to align # Constraint # added constraint: constraint((T0357)G59.CA, (T0357)I83.CB) [> 4.1235 = 6.8726 < 8.9343] w=0.2112 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)I91.CB) [> 3.3387 = 5.5645 < 7.2339] w=0.2080 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)I91.CB) [> 4.2131 = 7.0218 < 9.1283] w=0.2080 to align # Constraint # added constraint: constraint((T0357)G59.CA, (T0357)V93.CB) [> 3.6577 = 6.0962 < 7.9251] w=0.2080 to align # Constraint # added constraint: constraint((T0357)G61.CA, (T0357)G94.CA) [> 3.2934 = 5.4890 < 7.1356] w=0.2080 to align # Constraint # added constraint: constraint((T0357)S62.CB, (T0357)G94.CA) [> 3.3497 = 5.5828 < 7.2576] w=0.2080 to align # Constraint # added constraint: constraint((T0357)S62.CB, (T0357)A95.CB) [> 3.6313 = 6.0521 < 7.8677] w=0.2080 to align # Constraint # added constraint: constraint((T0357)R119.CB, (T0357)V129.CB) [> 4.1641 = 6.9401 < 9.0222] w=0.2072 to align # Constraint # added constraint: constraint((T0357)D118.CB, (T0357)V129.CB) [> 3.3003 = 5.5005 < 7.1506] w=0.2072 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)V120.CB) [> 4.2031 = 7.0052 < 9.1067] w=0.2072 to align # Constraint # added constraint: constraint((T0357)E47.CB, (T0357)N75.CB) [> 3.8988 = 6.4980 < 8.4473] w=0.2072 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)I82.CB) [> 3.5633 = 5.9389 < 7.7206] w=0.2064 to align # Constraint # added constraint: constraint((T0357)I82.CB, (T0357)P101.CB) [> 4.3348 = 7.2246 < 9.3920] w=0.2064 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)G94.CA) [> 4.4539 = 7.4232 < 9.6502] w=0.2058 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)V93.CB) [> 4.5113 = 7.5189 < 9.7745] w=0.2058 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)K80.CB) [> 4.0915 = 6.8193 < 8.8650] w=0.2052 to align # Constraint # added constraint: constraint((T0357)L69.CB, (T0357)A81.CB) [> 4.1886 = 6.9811 < 9.0754] w=0.2044 to align # Constraint # added constraint: constraint((T0357)A81.CB, (T0357)M97.CB) [> 3.7418 = 6.2363 < 8.1072] w=0.2040 to align # Constraint # added constraint: constraint((T0357)A81.CB, (T0357)I91.CB) [> 4.0907 = 6.8179 < 8.8633] w=0.2040 to align # Constraint # added constraint: constraint((T0357)K80.CB, (T0357)I90.CB) [> 3.4505 = 5.7508 < 7.4761] w=0.2040 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)I83.CB) [> 4.4917 = 7.4861 < 9.7319] w=0.2040 to align # Constraint # added constraint: constraint((T0357)A81.CB, (T0357)A96.CB) [> 4.1561 = 6.9268 < 9.0048] w=0.2032 to align # Constraint # added constraint: constraint((T0357)I9.CB, (T0357)A18.CB) [> 3.1002 = 5.1669 < 6.7170] w=0.2030 to align # Constraint # added constraint: constraint((T0357)I9.CB, (T0357)L19.CB) [> 4.5305 = 7.5508 < 9.8161] w=0.2030 to align # Constraint # added constraint: constraint((T0357)T10.CB, (T0357)L19.CB) [> 4.5457 = 7.5762 < 9.8490] w=0.2030 to align # Constraint # added constraint: constraint((T0357)L28.CB, (T0357)K74.CB) [> 3.7354 = 6.2257 < 8.0934] w=0.2030 to align # Constraint # added constraint: constraint((T0357)G29.CA, (T0357)K74.CB) [> 4.4258 = 7.3764 < 9.5893] w=0.2030 to align # Constraint # added constraint: constraint((T0357)G30.CA, (T0357)K74.CB) [> 3.0781 = 5.1301 < 6.6691] w=0.2030 to align # Constraint # added constraint: constraint((T0357)G30.CA, (T0357)N75.CB) [> 3.9558 = 6.5930 < 8.5709] w=0.2030 to align # Constraint # added constraint: constraint((T0357)G30.CA, (T0357)G76.CA) [> 4.0737 = 6.7894 < 8.8263] w=0.2030 to align # Constraint # added constraint: constraint((T0357)I31.CB, (T0357)G76.CA) [> 2.0708 = 3.4513 < 4.4867] w=0.2030 to align # Constraint # added constraint: constraint((T0357)D32.CB, (T0357)G76.CA) [> 3.6287 = 6.0478 < 7.8621] w=0.2030 to align # Constraint # added constraint: constraint((T0357)K33.CB, (T0357)R73.CB) [> 3.2925 = 5.4876 < 7.1338] w=0.2030 to align # Constraint # added constraint: constraint((T0357)K33.CB, (T0357)G76.CA) [> 3.1129 = 5.1881 < 6.7445] w=0.2030 to align # Constraint # added constraint: constraint((T0357)E34.CB, (T0357)G51.CA) [> 3.7830 = 6.3050 < 8.1965] w=0.2030 to align # Constraint # added constraint: constraint((T0357)E34.CB, (T0357)R52.CB) [> 4.3536 = 7.2560 < 9.4328] w=0.2030 to align # Constraint # added constraint: constraint((T0357)T35.CB, (T0357)G51.CA) [> 4.4024 = 7.3374 < 9.5386] w=0.2030 to align # Constraint # added constraint: constraint((T0357)T35.CB, (T0357)G76.CA) [> 3.1539 = 5.2566 < 6.8335] w=0.2030 to align # Constraint # added constraint: constraint((T0357)D118.CB, (T0357)E133.CB) [> 3.8163 = 6.3605 < 8.2687] w=0.2026 to align # Constraint # added constraint: constraint((T0357)V114.CB, (T0357)L131.CB) [> 4.4026 = 7.3376 < 9.5388] w=0.2016 to align # Constraint # added constraint: constraint((T0357)L69.CB, (T0357)A92.CB) [> 4.0257 = 6.7095 < 8.7223] w=0.2009 to align # Constraint # added constraint: constraint((T0357)T35.CB, (T0357)A50.CB) [> 3.0677 = 5.1128 < 6.6466] w=0.1995 to align # Constraint # added constraint: constraint((T0357)Y24.CB, (T0357)K60.CB) [> 4.6174 = 7.6957 < 10.0044] w=0.1930 to align # Constraint # added constraint: constraint((T0357)Y24.CB, (T0357)V64.CB) [> 3.2547 = 5.4244 < 7.0518] w=0.1930 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)G58.CA) [> 3.6052 = 6.0087 < 7.8113] w=0.1930 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)V64.CB) [> 4.5815 = 7.6358 < 9.9266] w=0.1930 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)Y67.CB) [> 4.6245 = 7.7074 < 10.0197] w=0.1930 to align # Constraint # added constraint: constraint((T0357)S26.CB, (T0357)F56.CB) [> 4.2208 = 7.0347 < 9.1451] w=0.1930 to align # Constraint # added constraint: constraint((T0357)F27.CB, (T0357)L54.CB) [> 4.0377 = 6.7295 < 8.7483] w=0.1930 to align # Constraint # added constraint: constraint((T0357)F27.CB, (T0357)V55.CB) [> 4.2239 = 7.0398 < 9.1517] w=0.1930 to align # Constraint # added constraint: constraint((T0357)F27.CB, (T0357)F56.CB) [> 2.5387 = 4.2311 < 5.5004] w=0.1930 to align # Constraint # added constraint: constraint((T0357)F27.CB, (T0357)P57.CB) [> 4.5058 = 7.5097 < 9.7626] w=0.1930 to align # Constraint # added constraint: constraint((T0357)L28.CB, (T0357)V55.CB) [> 2.8896 = 4.8161 < 6.2609] w=0.1930 to align # Constraint # added constraint: constraint((T0357)L28.CB, (T0357)F56.CB) [> 4.6665 = 7.7775 < 10.1107] w=0.1930 to align # Constraint # added constraint: constraint((T0357)C6.CB, (T0357)E17.CB) [> 4.5343 = 7.5572 < 9.8243] w=0.1903 to align # Constraint # added constraint: constraint((T0357)G29.CA, (T0357)E43.CB) [> 4.7388 = 7.8980 < 10.2674] w=0.1896 to align # Constraint # added constraint: constraint((T0357)L19.CB, (T0357)V49.CB) [> 3.3588 = 5.5979 < 7.2773] w=0.1894 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)V49.CB) [> 4.5454 = 7.5757 < 9.8484] w=0.1894 to align # Constraint # added constraint: constraint((T0357)G58.CA, (T0357)L69.CB) [> 4.7961 = 7.9936 < 10.3916] w=0.1885 to align # Constraint # added constraint: constraint((T0357)E17.CB, (T0357)F56.CB) [> 4.4454 = 7.4089 < 9.6316] w=0.1885 to align # Constraint # added constraint: constraint((T0357)E17.CB, (T0357)V55.CB) [> 3.1584 = 5.2641 < 6.8433] w=0.1885 to align # Constraint # added constraint: constraint((T0357)G16.CA, (T0357)P57.CB) [> 4.2107 = 7.0179 < 9.1233] w=0.1885 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)V68.CB) [> 3.9390 = 6.5651 < 8.5346] w=0.1856 to align # Constraint # added constraint: constraint((T0357)A8.CB, (T0357)V64.CB) [> 3.1824 = 5.3039 < 6.8951] w=0.1736 to align # Constraint # added constraint: constraint((T0357)G16.CA, (T0357)V64.CB) [> 3.6607 = 6.1012 < 7.9315] w=0.1736 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)V68.CB) [> 2.6683 = 4.4473 < 5.7814] w=0.1736 to align # Constraint # added constraint: constraint((T0357)V20.CB, (T0357)N71.CB) [> 3.7487 = 6.2478 < 8.1221] w=0.1736 to align # Constraint # added constraint: constraint((T0357)V20.CB, (T0357)L72.CB) [> 3.6277 = 6.0462 < 7.8601] w=0.1736 to align # Constraint # added constraint: constraint((T0357)K22.CB, (T0357)L72.CB) [> 3.8617 = 6.4361 < 8.3670] w=0.1736 to align # Constraint # added constraint: constraint((T0357)A95.CB, (T0357)V122.CB) [> 3.8043 = 6.3405 < 8.2426] w=0.1717 to align # Constraint # added constraint: constraint((T0357)G58.CA, (T0357)E99.CB) [> 2.4415 = 4.0692 < 5.2899] w=0.1717 to align # Constraint # added constraint: constraint((T0357)G58.CA, (T0357)A98.CB) [> 3.4857 = 5.8095 < 7.5524] w=0.1717 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)A98.CB) [> 3.8993 = 6.4989 < 8.4486] w=0.1717 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)A98.CB) [> 2.3168 = 3.8613 < 5.0197] w=0.1717 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)A98.CB) [> 4.2448 = 7.0746 < 9.1970] w=0.1717 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)M97.CB) [> 2.8370 = 4.7283 < 6.1468] w=0.1717 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)A98.CB) [> 4.7782 = 7.9637 < 10.3528] w=0.1717 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)M97.CB) [> 4.3503 = 7.2505 < 9.4256] w=0.1717 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)A96.CB) [> 2.7441 = 4.5735 < 5.9456] w=0.1717 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)M97.CB) [> 3.5996 = 5.9993 < 7.7991] w=0.1717 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)A96.CB) [> 4.3659 = 7.2766 < 9.4595] w=0.1717 to align # Constraint # added constraint: constraint((T0357)E126.CB, (T0357)H136.CB) [> 3.6248 = 6.0414 < 7.8538] w=0.1717 to align # Constraint # added constraint: constraint((T0357)D125.CB, (T0357)H136.CB) [> 3.5172 = 5.8620 < 7.6206] w=0.1717 to align # Constraint # added constraint: constraint((T0357)V114.CB, (T0357)I132.CB) [> 4.3346 = 7.2244 < 9.3917] w=0.1717 to align # Constraint # added constraint: constraint((T0357)V105.CB, (T0357)L134.CB) [> 2.0449 = 3.4081 < 4.4306] w=0.1717 to align # Constraint # added constraint: constraint((T0357)V105.CB, (T0357)I132.CB) [> 4.2698 = 7.1164 < 9.2513] w=0.1717 to align # Constraint # added constraint: constraint((T0357)E104.CB, (T0357)L134.CB) [> 3.5596 = 5.9327 < 7.7125] w=0.1717 to align # Constraint # added constraint: constraint((T0357)V103.CB, (T0357)L134.CB) [> 2.3024 = 3.8374 < 4.9886] w=0.1717 to align # Constraint # added constraint: constraint((T0357)M97.CB, (T0357)V129.CB) [> 4.2494 = 7.0824 < 9.2071] w=0.1717 to align # Constraint # added constraint: constraint((T0357)V120.CB, (T0357)L131.CB) [> 3.6969 = 6.1615 < 8.0100] w=0.1616 to align # Constraint # added constraint: constraint((T0357)G59.CA, (T0357)I90.CB) [> 4.5224 = 7.5374 < 9.7986] w=0.1558 to align # Constraint # added constraint: constraint((T0357)G59.CA, (T0357)I91.CB) [> 2.8393 = 4.7321 < 6.1517] w=0.1558 to align # Constraint # added constraint: constraint((T0357)K60.CB, (T0357)I91.CB) [> 4.0660 = 6.7767 < 8.8097] w=0.1558 to align # Constraint # added constraint: constraint((T0357)S66.CB, (T0357)A95.CB) [> 3.1919 = 5.3198 < 6.9158] w=0.1558 to align # Constraint # added constraint: constraint((T0357)S66.CB, (T0357)A98.CB) [> 3.2373 = 5.3956 < 7.0142] w=0.1558 to align # Constraint # added constraint: constraint((T0357)L70.CB, (T0357)E99.CB) [> 3.3842 = 5.6403 < 7.3323] w=0.1558 to align # Constraint # added constraint: constraint((T0357)G65.CA, (T0357)A96.CB) [> 3.7220 = 6.2032 < 8.0642] w=0.1553 to align # Constraint # added constraint: constraint((T0357)I83.CB, (T0357)E104.CB) [> 3.9538 = 6.5896 < 8.5665] w=0.1535 to align # Constraint # added constraint: constraint((T0357)I83.CB, (T0357)A92.CB) [> 3.8342 = 6.3903 < 8.3074] w=0.1513 to align # Constraint # added constraint: constraint((T0357)V121.CB, (T0357)L131.CB) [> 3.1475 = 5.2459 < 6.8197] w=0.1507 to align # Constraint # added constraint: constraint((T0357)K80.CB, (T0357)A95.CB) [> 4.1822 = 6.9703 < 9.0614] w=0.1504 to align # Constraint # added constraint: constraint((T0357)A81.CB, (T0357)G94.CA) [> 4.1154 = 6.8590 < 8.9167] w=0.1504 to align # Constraint # added constraint: constraint((T0357)A81.CB, (T0357)A95.CB) [> 2.9548 = 4.9247 < 6.4021] w=0.1504 to align # Constraint # added constraint: constraint((T0357)E17.CB, (T0357)G117.CA) [> 3.0397 = 5.0661 < 6.5859] w=0.1500 to align # Constraint # added constraint: constraint((T0357)G16.CA, (T0357)V121.CB) [> 4.3656 = 7.2759 < 9.4587] w=0.1500 to align # Constraint # added constraint: constraint((T0357)G16.CA, (T0357)V120.CB) [> 3.6446 = 6.0744 < 7.8967] w=0.1500 to align # Constraint # added constraint: constraint((T0357)G16.CA, (T0357)R119.CB) [> 3.6992 = 6.1654 < 8.0150] w=0.1500 to align # Constraint # added constraint: constraint((T0357)E15.CB, (T0357)V121.CB) [> 2.6394 = 4.3989 < 5.7186] w=0.1500 to align # Constraint # added constraint: constraint((T0357)E15.CB, (T0357)V120.CB) [> 4.3200 = 7.1999 < 9.3599] w=0.1500 to align # Constraint # added constraint: constraint((T0357)E15.CB, (T0357)R119.CB) [> 4.4609 = 7.4349 < 9.6654] w=0.1500 to align # Constraint # added constraint: constraint((T0357)E15.CB, (T0357)G51.CA) [> 4.1780 = 6.9633 < 9.0524] w=0.1500 to align # Constraint # added constraint: constraint((T0357)A14.CB, (T0357)V122.CB) [> 3.0862 = 5.1437 < 6.6868] w=0.1500 to align # Constraint # added constraint: constraint((T0357)A14.CB, (T0357)V121.CB) [> 4.1426 = 6.9043 < 8.9756] w=0.1500 to align # Constraint # added constraint: constraint((T0357)R13.CB, (T0357)N123.CB) [> 3.1272 = 5.2119 < 6.7755] w=0.1500 to align # Constraint # added constraint: constraint((T0357)K85.CB, (T0357)F111.CB) [> 2.9608 = 4.9346 < 6.4150] w=0.1500 to align # Constraint # added constraint: constraint((T0357)N84.CB, (T0357)F111.CB) [> 4.1048 = 6.8412 < 8.8936] w=0.1500 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)G94.CA) [> 3.7762 = 6.2936 < 8.1817] w=0.1500 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)K60.CB) [> 3.3661 = 5.6102 < 7.2933] w=0.1500 to align # Constraint # added constraint: constraint((T0357)L19.CB, (T0357)G117.CA) [> 4.2157 = 7.0261 < 9.1339] w=0.1500 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)V120.CB) [> 3.3810 = 5.6350 < 7.3255] w=0.1500 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)G117.CA) [> 3.0773 = 5.1289 < 6.6675] w=0.1500 to align # Constraint # added constraint: constraint((T0357)E17.CB, (T0357)V120.CB) [> 4.4727 = 7.4544 < 9.6908] w=0.1500 to align # Constraint # added constraint: constraint((T0357)E17.CB, (T0357)R119.CB) [> 3.6059 = 6.0098 < 7.8127] w=0.1500 to align # Constraint # added constraint: constraint((T0357)A78.CB, (T0357)M97.CB) [> 4.2653 = 7.1088 < 9.2414] w=0.1484 to align # Constraint # added constraint: constraint((T0357)P79.CB, (T0357)M97.CB) [> 3.4390 = 5.7317 < 7.4512] w=0.1484 to align # Constraint # added constraint: constraint((T0357)R119.CB, (T0357)L131.CB) [> 4.0100 = 6.6834 < 8.6884] w=0.1437 to align # Constraint # added constraint: constraint((T0357)D118.CB, (T0357)L131.CB) [> 2.9758 = 4.9596 < 6.4475] w=0.1437 to align # Constraint # added constraint: constraint((T0357)A113.CB, (T0357)L131.CB) [> 4.0937 = 6.8229 < 8.8698] w=0.1437 to align # Constraint # added constraint: constraint((T0357)G59.CA, (T0357)L69.CB) [> 4.3314 = 7.2190 < 9.3847] w=0.1422 to align # Constraint # added constraint: constraint((T0357)G59.CA, (T0357)I82.CB) [> 3.2437 = 5.4061 < 7.0280] w=0.1422 to align # Constraint # added constraint: constraint((T0357)R119.CB, (T0357)I132.CB) [> 4.0457 = 6.7428 < 8.7657] w=0.1421 to align # Constraint # added constraint: constraint((T0357)G16.CA, (T0357)K85.CB) [> 4.3143 = 7.1905 < 9.3477] w=0.1398 to align # Constraint # added constraint: constraint((T0357)E17.CB, (T0357)N84.CB) [> 4.6102 = 7.6837 < 9.9888] w=0.1398 to align # Constraint # added constraint: constraint((T0357)E17.CB, (T0357)K85.CB) [> 2.6832 = 4.4719 < 5.8135] w=0.1398 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)I82.CB) [> 2.8858 = 4.8096 < 6.2525] w=0.1398 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)N84.CB) [> 4.2650 = 7.1083 < 9.2409] w=0.1398 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)K85.CB) [> 4.6781 = 7.7968 < 10.1358] w=0.1398 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)I91.CB) [> 2.9277 = 4.8795 < 6.3433] w=0.1398 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)A92.CB) [> 4.3455 = 7.2425 < 9.4152] w=0.1398 to align # Constraint # added constraint: constraint((T0357)L19.CB, (T0357)I82.CB) [> 3.7659 = 6.2765 < 8.1595] w=0.1398 to align # Constraint # added constraint: constraint((T0357)L19.CB, (T0357)I83.CB) [> 2.9113 = 4.8521 < 6.3078] w=0.1398 to align # Constraint # added constraint: constraint((T0357)T10.CB, (T0357)T87.CB) [> 4.3886 = 7.3144 < 9.5087] w=0.1398 to align # Constraint # added constraint: constraint((T0357)A8.CB, (T0357)T89.CB) [> 4.7923 = 7.9871 < 10.3833] w=0.1398 to align # Constraint # added constraint: constraint((T0357)A8.CB, (T0357)T87.CB) [> 2.6253 = 4.3755 < 5.6881] w=0.1398 to align # Constraint # added constraint: constraint((T0357)R7.CB, (T0357)E88.CB) [> 4.3944 = 7.3239 < 9.5211] w=0.1398 to align # Constraint # added constraint: constraint((T0357)C6.CB, (T0357)T89.CB) [> 3.1865 = 5.3109 < 6.9041] w=0.1398 to align # Constraint # added constraint: constraint((T0357)C6.CB, (T0357)T87.CB) [> 3.7787 = 6.2978 < 8.1871] w=0.1398 to align # Constraint # added constraint: constraint((T0357)C6.CB, (T0357)I37.CB) [> 2.4757 = 4.1261 < 5.3639] w=0.1398 to align # Constraint # added constraint: constraint((T0357)A5.CB, (T0357)I37.CB) [> 4.3104 = 7.1840 < 9.3392] w=0.1398 to align # Constraint # added constraint: constraint((T0357)F4.CB, (T0357)K39.CB) [> 2.9667 = 4.9446 < 6.4279] w=0.1398 to align # Constraint # added constraint: constraint((T0357)F4.CB, (T0357)V38.CB) [> 4.7993 = 7.9989 < 10.3986] w=0.1398 to align # Constraint # added constraint: constraint((T0357)F4.CB, (T0357)I37.CB) [> 3.5248 = 5.8747 < 7.6371] w=0.1398 to align # Constraint # added constraint: constraint((T0357)K80.CB, (T0357)A92.CB) [> 4.4040 = 7.3401 < 9.5421] w=0.1398 to align # Constraint # added constraint: constraint((T0357)A78.CB, (T0357)A98.CB) [> 3.7839 = 6.3065 < 8.1984] w=0.1398 to align # Constraint # added constraint: constraint((T0357)G76.CA, (T0357)E99.CB) [> 3.9141 = 6.5235 < 8.4805] w=0.1398 to align # Constraint # added constraint: constraint((T0357)K39.CB, (T0357)I90.CB) [> 4.2802 = 7.1336 < 9.2737] w=0.1398 to align # Constraint # added constraint: constraint((T0357)V38.CB, (T0357)E104.CB) [> 4.4783 = 7.4639 < 9.7030] w=0.1398 to align # Constraint # added constraint: constraint((T0357)V38.CB, (T0357)I90.CB) [> 3.0005 = 5.0009 < 6.5011] w=0.1398 to align # Constraint # added constraint: constraint((T0357)V38.CB, (T0357)T89.CB) [> 4.7262 = 7.8770 < 10.2401] w=0.1398 to align # Constraint # added constraint: constraint((T0357)I37.CB, (T0357)I90.CB) [> 3.7865 = 6.3109 < 8.2042] w=0.1398 to align # Constraint # added constraint: constraint((T0357)I37.CB, (T0357)T89.CB) [> 2.6630 = 4.4382 < 5.7697] w=0.1398 to align # Constraint # added constraint: constraint((T0357)L28.CB, (T0357)A81.CB) [> 4.2432 = 7.0720 < 9.1936] w=0.1398 to align # Constraint # added constraint: constraint((T0357)F27.CB, (T0357)V103.CB) [> 3.0892 = 5.1487 < 6.6933] w=0.1398 to align # Constraint # added constraint: constraint((T0357)F27.CB, (T0357)M97.CB) [> 4.2453 = 7.0754 < 9.1980] w=0.1398 to align # Constraint # added constraint: constraint((T0357)F27.CB, (T0357)A81.CB) [> 4.6777 = 7.7962 < 10.1350] w=0.1398 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)M97.CB) [> 4.1592 = 6.9320 < 9.0116] w=0.1398 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)A81.CB) [> 3.8094 = 6.3490 < 8.2536] w=0.1398 to align # Constraint # added constraint: constraint((T0357)V20.CB, (T0357)A92.CB) [> 4.6370 = 7.7283 < 10.0468] w=0.1398 to align # Constraint # added constraint: constraint((T0357)V20.CB, (T0357)I82.CB) [> 3.2511 = 5.4185 < 7.0441] w=0.1398 to align # Constraint # added constraint: constraint((T0357)V20.CB, (T0357)A81.CB) [> 3.8687 = 6.4479 < 8.3822] w=0.1398 to align # Constraint # added constraint: constraint((T0357)V20.CB, (T0357)I31.CB) [> 4.0367 = 6.7279 < 8.7462] w=0.1398 to align # Constraint # added constraint: constraint((T0357)L19.CB, (T0357)I91.CB) [> 4.3383 = 7.2305 < 9.3996] w=0.1398 to align # Constraint # added constraint: constraint((T0357)L19.CB, (T0357)K85.CB) [> 3.2515 = 5.4192 < 7.0450] w=0.1398 to align # Constraint # added constraint: constraint((T0357)L19.CB, (T0357)N84.CB) [> 4.4555 = 7.4258 < 9.6535] w=0.1398 to align # Constraint # added constraint: constraint((T0357)G61.CA, (T0357)A98.CB) [> 4.0981 = 6.8301 < 8.8791] w=0.1390 to align # Constraint # added constraint: constraint((T0357)L69.CB, (T0357)A95.CB) [> 3.9737 = 6.6228 < 8.6097] w=0.1390 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)I90.CB) [> 4.0771 = 6.7951 < 8.8336] w=0.1381 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)I91.CB) [> 3.9526 = 6.5877 < 8.5640] w=0.1381 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)I91.CB) [> 4.2334 = 7.0556 < 9.1723] w=0.1381 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)V93.CB) [> 3.9241 = 6.5402 < 8.5022] w=0.1381 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)V93.CB) [> 2.8016 = 4.6693 < 6.0701] w=0.1381 to align # Constraint # added constraint: constraint((T0357)G59.CA, (T0357)A92.CB) [> 4.3056 = 7.1761 < 9.3289] w=0.1381 to align # Constraint # added constraint: constraint((T0357)G59.CA, (T0357)G94.CA) [> 3.0769 = 5.1281 < 6.6666] w=0.1381 to align # Constraint # added constraint: constraint((T0357)K60.CB, (T0357)V93.CB) [> 4.4713 = 7.4521 < 9.6877] w=0.1381 to align # Constraint # added constraint: constraint((T0357)G61.CA, (T0357)V93.CB) [> 2.8871 = 4.8119 < 6.2554] w=0.1381 to align # Constraint # added constraint: constraint((T0357)T63.CB, (T0357)G94.CA) [> 3.3682 = 5.6136 < 7.2977] w=0.1381 to align # Constraint # added constraint: constraint((T0357)T63.CB, (T0357)A95.CB) [> 2.4454 = 4.0757 < 5.2984] w=0.1381 to align # Constraint # added constraint: constraint((T0357)V64.CB, (T0357)I90.CB) [> 3.9661 = 6.6102 < 8.5933] w=0.1381 to align # Constraint # added constraint: constraint((T0357)V64.CB, (T0357)A92.CB) [> 3.6755 = 6.1259 < 7.9637] w=0.1381 to align # Constraint # added constraint: constraint((T0357)V64.CB, (T0357)A96.CB) [> 3.1201 = 5.2001 < 6.7602] w=0.1381 to align # Constraint # added constraint: constraint((T0357)I91.CB, (T0357)V120.CB) [> 4.5069 = 7.5115 < 9.7649] w=0.1381 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)A92.CB) [> 4.2304 = 7.0506 < 9.1658] w=0.1376 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)A92.CB) [> 2.2347 = 3.7244 < 4.8418] w=0.1376 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)A95.CB) [> 3.8533 = 6.4222 < 8.3488] w=0.1376 to align # Constraint # added constraint: constraint((T0357)I82.CB, (T0357)V105.CB) [> 3.8841 = 6.4735 < 8.4155] w=0.1376 to align # Constraint # added constraint: constraint((T0357)A96.CB, (T0357)V105.CB) [> 4.0947 = 6.8245 < 8.8719] w=0.1367 to align # Constraint # added constraint: constraint((T0357)A8.CB, (T0357)L19.CB) [> 2.6298 = 4.3830 < 5.6979] w=0.1353 to align # Constraint # added constraint: constraint((T0357)A8.CB, (T0357)T21.CB) [> 4.7288 = 7.8813 < 10.2457] w=0.1353 to align # Constraint # added constraint: constraint((T0357)I31.CB, (T0357)A50.CB) [> 3.3781 = 5.6302 < 7.3193] w=0.1353 to align # Constraint # added constraint: constraint((T0357)K33.CB, (T0357)P79.CB) [> 4.7581 = 7.9302 < 10.3093] w=0.1353 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)V103.CB) [> 4.7300 = 7.8833 < 10.2483] w=0.1353 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)A81.CB) [> 2.9255 = 4.8758 < 6.3386] w=0.1353 to align # Constraint # added constraint: constraint((T0357)G58.CA, (T0357)I83.CB) [> 3.7984 = 6.3306 < 8.2298] w=0.1353 to align # Constraint # added constraint: constraint((T0357)G65.CA, (T0357)A92.CB) [> 4.4534 = 7.4223 < 9.6489] w=0.1341 to align # Constraint # added constraint: constraint((T0357)S62.CB, (T0357)I91.CB) [> 3.6818 = 6.1364 < 7.9773] w=0.1341 to align # Constraint # added constraint: constraint((T0357)I83.CB, (T0357)M97.CB) [> 2.8574 = 4.7624 < 6.1911] w=0.1332 to align # Constraint # added constraint: constraint((T0357)I83.CB, (T0357)A96.CB) [> 4.4631 = 7.4385 < 9.6700] w=0.1332 to align # Constraint # added constraint: constraint((T0357)I83.CB, (T0357)A95.CB) [> 4.4287 = 7.3811 < 9.5955] w=0.1332 to align # Constraint # added constraint: constraint((T0357)I82.CB, (T0357)M97.CB) [> 4.6405 = 7.7341 < 10.0543] w=0.1332 to align # Constraint # added constraint: constraint((T0357)S66.CB, (T0357)A92.CB) [> 2.9049 = 4.8414 < 6.2938] w=0.1332 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)V103.CB) [> 3.2798 = 5.4663 < 7.1061] w=0.1332 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)V103.CB) [> 3.8384 = 6.3974 < 8.3166] w=0.1332 to align # Constraint # added constraint: constraint((T0357)K86.CB, (T0357)A98.CB) [> 4.2494 = 7.0823 < 9.2069] w=0.1332 to align # Constraint # added constraint: constraint((T0357)G36.CA, (T0357)G76.CA) [> 3.3016 = 5.5027 < 7.1535] w=0.1319 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)V93.CB) [> 3.7322 = 6.2203 < 8.0864] w=0.1319 to align # Constraint # added constraint: constraint((T0357)C6.CB, (T0357)V20.CB) [> 3.9629 = 6.6048 < 8.5863] w=0.1305 to align # Constraint # added constraint: constraint((T0357)C6.CB, (T0357)A18.CB) [> 3.1665 = 5.2776 < 6.8609] w=0.1305 to align # Constraint # added constraint: constraint((T0357)L19.CB, (T0357)G29.CA) [> 3.6379 = 6.0631 < 7.8821] w=0.1286 to align # Constraint # added constraint: constraint((T0357)G29.CA, (T0357)L54.CB) [> 3.4667 = 5.7779 < 7.5112] w=0.1286 to align # Constraint # added constraint: constraint((T0357)G29.CA, (T0357)V55.CB) [> 3.7573 = 6.2622 < 8.1408] w=0.1286 to align # Constraint # added constraint: constraint((T0357)I44.CB, (T0357)I53.CB) [> 3.2555 = 5.4257 < 7.0535] w=0.1286 to align # Constraint # added constraint: constraint((T0357)K80.CB, (T0357)I91.CB) [> 3.8092 = 6.3486 < 8.2532] w=0.1286 to align # Constraint # added constraint: constraint((T0357)S62.CB, (T0357)E88.CB) [> 2.6920 = 4.4866 < 5.8326] w=0.1284 to align # Constraint # added constraint: constraint((T0357)F4.CB, (T0357)E17.CB) [> 3.5232 = 5.8720 < 7.6336] w=0.1275 to align # Constraint # added constraint: constraint((T0357)F4.CB, (T0357)A18.CB) [> 3.3081 = 5.5135 < 7.1676] w=0.1275 to align # Constraint # added constraint: constraint((T0357)F4.CB, (T0357)L19.CB) [> 3.8822 = 6.4704 < 8.4115] w=0.1275 to align # Constraint # added constraint: constraint((T0357)A5.CB, (T0357)E17.CB) [> 2.2134 = 3.6889 < 4.7956] w=0.1275 to align # Constraint # added constraint: constraint((T0357)R7.CB, (T0357)L54.CB) [> 4.5474 = 7.5790 < 9.8527] w=0.1275 to align # Constraint # added constraint: constraint((T0357)G12.CA, (T0357)P57.CB) [> 4.0041 = 6.6736 < 8.6756] w=0.1275 to align # Constraint # added constraint: constraint((T0357)G12.CA, (T0357)G58.CA) [> 3.8246 = 6.3744 < 8.2867] w=0.1275 to align # Constraint # added constraint: constraint((T0357)V20.CB, (T0357)K45.CB) [> 2.9054 = 4.8424 < 6.2951] w=0.1275 to align # Constraint # added constraint: constraint((T0357)V20.CB, (T0357)I53.CB) [> 4.6767 = 7.7945 < 10.1328] w=0.1275 to align # Constraint # added constraint: constraint((T0357)I91.CB, (T0357)L102.CB) [> 4.1178 = 6.8630 < 8.9220] w=0.1269 to align # Constraint # added constraint: constraint((T0357)V93.CB, (T0357)L102.CB) [> 4.5818 = 7.6363 < 9.9272] w=0.1269 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)S66.CB) [> 3.7478 = 6.2462 < 8.1201] w=0.1172 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)V38.CB) [> 3.7147 = 6.1912 < 8.0486] w=0.1157 to align # Constraint # added constraint: constraint((T0357)Y24.CB, (T0357)T35.CB) [> 4.3233 = 7.2055 < 9.3672] w=0.1157 to align # Constraint # added constraint: constraint((T0357)E23.CB, (T0357)T35.CB) [> 4.7035 = 7.8391 < 10.1908] w=0.1157 to align # Constraint # added constraint: constraint((T0357)T21.CB, (T0357)T35.CB) [> 3.7397 = 6.2327 < 8.1026] w=0.1157 to align # Constraint # added constraint: constraint((T0357)E17.CB, (T0357)V68.CB) [> 4.4351 = 7.3917 < 9.6093] w=0.1157 to align # Constraint # added constraint: constraint((T0357)A8.CB, (T0357)V68.CB) [> 3.4304 = 5.7172 < 7.4324] w=0.1157 to align # Constraint # added constraint: constraint((T0357)A8.CB, (T0357)Y67.CB) [> 4.0342 = 6.7236 < 8.7407] w=0.1157 to align # Constraint # added constraint: constraint((T0357)F110.CB, (T0357)L131.CB) [> 4.3608 = 7.2679 < 9.4483] w=0.1157 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)V64.CB) [> 3.0833 = 5.1388 < 6.6805] w=0.1157 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)G65.CA) [> 4.5266 = 7.5443 < 9.8076] w=0.1157 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)I44.CB) [> 4.3992 = 7.3321 < 9.5317] w=0.1157 to align # Constraint # added constraint: constraint((T0357)K33.CB, (T0357)I44.CB) [> 4.7736 = 7.9559 < 10.3427] w=0.1157 to align # Constraint # added constraint: constraint((T0357)I83.CB, (T0357)V129.CB) [> 4.1494 = 6.9157 < 8.9904] w=0.1030 to align # Constraint # added constraint: constraint((T0357)C42.CB, (T0357)Y67.CB) [> 2.7841 = 4.6401 < 6.0322] w=0.1030 to align # Constraint # added constraint: constraint((T0357)V68.CB, (T0357)K80.CB) [> 4.1630 = 6.9384 < 9.0199] w=0.0957 to align # Constraint # added constraint: constraint((T0357)V38.CB, (T0357)A96.CB) [> 3.9906 = 6.6510 < 8.6463] w=0.0871 to align # Constraint # added constraint: constraint((T0357)I82.CB, (T0357)V93.CB) [> 2.6787 = 4.4645 < 5.8038] w=0.0871 to align # Constraint # added constraint: constraint((T0357)I82.CB, (T0357)G94.CA) [> 3.6413 = 6.0688 < 7.8895] w=0.0871 to align # Constraint # added constraint: constraint((T0357)I83.CB, (T0357)V93.CB) [> 2.9434 = 4.9056 < 6.3773] w=0.0871 to align # Constraint # added constraint: constraint((T0357)N84.CB, (T0357)V93.CB) [> 3.5743 = 5.9571 < 7.7443] w=0.0871 to align # Constraint # added constraint: constraint((T0357)K22.CB, (T0357)P57.CB) [> 2.7670 = 4.6116 < 5.9951] w=0.0859 to align # Constraint # added constraint: constraint((T0357)E23.CB, (T0357)F56.CB) [> 4.5242 = 7.5403 < 9.8024] w=0.0859 to align # Constraint # added constraint: constraint((T0357)E23.CB, (T0357)P57.CB) [> 2.0444 = 3.4074 < 4.4296] w=0.0859 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)G61.CA) [> 3.2639 = 5.4398 < 7.0717] w=0.0859 to align # Constraint # added constraint: constraint((T0357)S26.CB, (T0357)G61.CA) [> 3.7100 = 6.1833 < 8.0382] w=0.0859 to align # Constraint # added constraint: constraint((T0357)S26.CB, (T0357)S62.CB) [> 4.2708 = 7.1181 < 9.2535] w=0.0859 to align # Constraint # added constraint: constraint((T0357)F27.CB, (T0357)G61.CA) [> 3.1045 = 5.1742 < 6.7264] w=0.0859 to align # Constraint # added constraint: constraint((T0357)F27.CB, (T0357)T63.CB) [> 4.6345 = 7.7242 < 10.0414] w=0.0859 to align # Constraint # added constraint: constraint((T0357)F27.CB, (T0357)G65.CA) [> 3.1401 = 5.2335 < 6.8036] w=0.0859 to align # Constraint # added constraint: constraint((T0357)L28.CB, (T0357)S62.CB) [> 3.2851 = 5.4752 < 7.1178] w=0.0859 to align # Constraint # added constraint: constraint((T0357)G30.CA, (T0357)G65.CA) [> 3.3096 = 5.5159 < 7.1707] w=0.0859 to align # Constraint # added constraint: constraint((T0357)G30.CA, (T0357)V68.CB) [> 4.0791 = 6.7986 < 8.8381] w=0.0859 to align # Constraint # added constraint: constraint((T0357)I31.CB, (T0357)G65.CA) [> 2.7050 = 4.5084 < 5.8609] w=0.0859 to align # Constraint # added constraint: constraint((T0357)I31.CB, (T0357)Y67.CB) [> 4.6939 = 7.8232 < 10.1701] w=0.0859 to align # Constraint # added constraint: constraint((T0357)A14.CB, (T0357)A124.CB) [> 4.2966 = 7.1609 < 9.3092] w=0.0859 to align # Constraint # added constraint: constraint((T0357)V20.CB, (T0357)V55.CB) [> 3.0655 = 5.1091 < 6.6419] w=0.0859 to align # Constraint # added constraint: constraint((T0357)V20.CB, (T0357)F56.CB) [> 4.6078 = 7.6796 < 9.9835] w=0.0859 to align # Constraint # added constraint: constraint((T0357)V20.CB, (T0357)G117.CA) [> 4.4501 = 7.4169 < 9.6419] w=0.0859 to align # Constraint # added constraint: constraint((T0357)T63.CB, (T0357)I90.CB) [> 2.7611 = 4.6018 < 5.9823] w=0.0859 to align # Constraint # added constraint: constraint((T0357)G65.CA, (T0357)I91.CB) [> 4.7044 = 7.8407 < 10.1929] w=0.0859 to align # Constraint # added constraint: constraint((T0357)S66.CB, (T0357)I91.CB) [> 4.0850 = 6.8083 < 8.8508] w=0.0859 to align # Constraint # added constraint: constraint((T0357)S66.CB, (T0357)G94.CA) [> 2.9458 = 4.9097 < 6.3827] w=0.0859 to align # Constraint # added constraint: constraint((T0357)S66.CB, (T0357)M97.CB) [> 4.6414 = 7.7357 < 10.0564] w=0.0859 to align # Constraint # added constraint: constraint((T0357)Y67.CB, (T0357)A98.CB) [> 3.4358 = 5.7263 < 7.4441] w=0.0859 to align # Constraint # added constraint: constraint((T0357)L70.CB, (T0357)P79.CB) [> 4.0162 = 6.6936 < 8.7017] w=0.0859 to align # Constraint # added constraint: constraint((T0357)L70.CB, (T0357)A98.CB) [> 3.2912 = 5.4854 < 7.1310] w=0.0859 to align # Constraint # added constraint: constraint((T0357)G76.CA, (T0357)G94.CA) [> 3.6163 = 6.0271 < 7.8352] w=0.0859 to align # Constraint # added constraint: constraint((T0357)A81.CB, (T0357)A124.CB) [> 3.2920 = 5.4867 < 7.1326] w=0.0859 to align # Constraint # added constraint: constraint((T0357)G94.CA, (T0357)A124.CB) [> 4.5636 = 7.6061 < 9.8879] w=0.0859 to align # Constraint # added constraint: constraint((T0357)I31.CB, (T0357)V68.CB) [> 2.9587 = 4.9312 < 6.4106] w=0.0859 to align # Constraint # added constraint: constraint((T0357)K33.CB, (T0357)S62.CB) [> 4.0016 = 6.6694 < 8.6702] w=0.0859 to align # Constraint # added constraint: constraint((T0357)T35.CB, (T0357)V64.CB) [> 3.9437 = 6.5729 < 8.5447] w=0.0859 to align # Constraint # added constraint: constraint((T0357)C42.CB, (T0357)L70.CB) [> 4.0518 = 6.7529 < 8.7788] w=0.0859 to align # Constraint # added constraint: constraint((T0357)C42.CB, (T0357)N71.CB) [> 2.1967 = 3.6611 < 4.7594] w=0.0859 to align # Constraint # added constraint: constraint((T0357)V120.CB, (T0357)I132.CB) [> 3.9350 = 6.5583 < 8.5258] w=0.0843 to align # Constraint # added constraint: constraint((T0357)V121.CB, (T0357)I132.CB) [> 4.6461 = 7.7435 < 10.0665] w=0.0843 to align # Constraint # added constraint: constraint((T0357)G94.CA, (T0357)V121.CB) [> 3.5430 = 5.9050 < 7.6764] w=0.0814 to align # Constraint # added constraint: constraint((T0357)E40.CB, (T0357)V49.CB) [> 3.6754 = 6.1256 < 7.9633] w=0.0699 to align # Constraint # added constraint: constraint((T0357)E40.CB, (T0357)A50.CB) [> 3.9611 = 6.6018 < 8.5823] w=0.0699 to align # Constraint # added constraint: constraint((T0357)E40.CB, (T0357)G59.CA) [> 2.9753 = 4.9588 < 6.4464] w=0.0699 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)I91.CB) [> 3.2649 = 5.4415 < 7.0739] w=0.0699 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)A92.CB) [> 3.9132 = 6.5219 < 8.4785] w=0.0699 to align # Constraint # added constraint: constraint((T0357)G58.CA, (T0357)I91.CB) [> 2.4726 = 4.1211 < 5.3574] w=0.0699 to align # Constraint # added constraint: constraint((T0357)G58.CA, (T0357)A92.CB) [> 4.7661 = 7.9435 < 10.3266] w=0.0699 to align # Constraint # added constraint: constraint((T0357)G59.CA, (T0357)G76.CA) [> 4.1543 = 6.9239 < 9.0011] w=0.0699 to align # Constraint # added constraint: constraint((T0357)R11.CB, (T0357)G36.CA) [> 4.4607 = 7.4345 < 9.6648] w=0.0699 to align # Constraint # added constraint: constraint((T0357)T10.CB, (T0357)G36.CA) [> 4.5083 = 7.5138 < 9.7680] w=0.0699 to align # Constraint # added constraint: constraint((T0357)I9.CB, (T0357)G36.CA) [> 2.5756 = 4.2926 < 5.5804] w=0.0699 to align # Constraint # added constraint: constraint((T0357)C6.CB, (T0357)G36.CA) [> 3.0880 = 5.1466 < 6.6906] w=0.0699 to align # Constraint # added constraint: constraint((T0357)A5.CB, (T0357)G36.CA) [> 3.6724 = 6.1207 < 7.9570] w=0.0699 to align # Constraint # added constraint: constraint((T0357)K3.CB, (T0357)V38.CB) [> 3.8449 = 6.4082 < 8.3306] w=0.0699 to align # Constraint # added constraint: constraint((T0357)K3.CB, (T0357)I37.CB) [> 4.5623 = 7.6038 < 9.8849] w=0.0699 to align # Constraint # added constraint: constraint((T0357)N84.CB, (T0357)G94.CA) [> 4.5534 = 7.5891 < 9.8658] w=0.0699 to align # Constraint # added constraint: constraint((T0357)A81.CB, (T0357)V93.CB) [> 3.5672 = 5.9453 < 7.7288] w=0.0699 to align # Constraint # added constraint: constraint((T0357)K80.CB, (T0357)V93.CB) [> 3.4492 = 5.7487 < 7.4732] w=0.0699 to align # Constraint # added constraint: constraint((T0357)R73.CB, (T0357)E99.CB) [> 4.5885 = 7.6475 < 9.9417] w=0.0699 to align # Constraint # added constraint: constraint((T0357)G59.CA, (T0357)K80.CB) [> 4.0037 = 6.6729 < 8.6748] w=0.0699 to align # Constraint # added constraint: constraint((T0357)G61.CA, (T0357)I91.CB) [> 3.7681 = 6.2801 < 8.1642] w=0.0699 to align # Constraint # added constraint: constraint((T0357)G65.CA, (T0357)A95.CB) [> 3.5131 = 5.8552 < 7.6118] w=0.0699 to align # Constraint # added constraint: constraint((T0357)S66.CB, (T0357)E99.CB) [> 3.2894 = 5.4823 < 7.1270] w=0.0699 to align # Constraint # added constraint: constraint((T0357)T63.CB, (T0357)E99.CB) [> 2.2226 = 3.7043 < 4.8156] w=0.0691 to align # Constraint # added constraint: constraint((T0357)T63.CB, (T0357)I100.CB) [> 4.3058 = 7.1764 < 9.3293] w=0.0691 to align # Constraint # added constraint: constraint((T0357)T63.CB, (T0357)P101.CB) [> 3.0951 = 5.1584 < 6.7059] w=0.0691 to align # Constraint # added constraint: constraint((T0357)T63.CB, (T0357)V103.CB) [> 3.5977 = 5.9961 < 7.7950] w=0.0691 to align # Constraint # added constraint: constraint((T0357)T63.CB, (T0357)R106.CB) [> 3.2288 = 5.3814 < 6.9958] w=0.0691 to align # Constraint # added constraint: constraint((T0357)V64.CB, (T0357)L102.CB) [> 4.7532 = 7.9220 < 10.2986] w=0.0691 to align # Constraint # added constraint: constraint((T0357)G65.CA, (T0357)V93.CB) [> 4.4783 = 7.4639 < 9.7031] w=0.0691 to align # Constraint # added constraint: constraint((T0357)G46.CA, (T0357)N71.CB) [> 3.4766 = 5.7943 < 7.5326] w=0.0691 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)A81.CB) [> 4.1332 = 6.8887 < 8.9553] w=0.0691 to align # Constraint # added constraint: constraint((T0357)G59.CA, (T0357)K85.CB) [> 2.4634 = 4.1057 < 5.3374] w=0.0691 to align # Constraint # added constraint: constraint((T0357)T63.CB, (T0357)K85.CB) [> 4.0075 = 6.6791 < 8.6829] w=0.0691 to align # Constraint # added constraint: constraint((T0357)T63.CB, (T0357)K86.CB) [> 2.4211 = 4.0352 < 5.2457] w=0.0691 to align # Constraint # added constraint: constraint((T0357)T63.CB, (T0357)A98.CB) [> 3.5117 = 5.8529 < 7.6087] w=0.0691 to align # Constraint # added constraint: constraint((T0357)I91.CB, (T0357)P101.CB) [> 2.9515 = 4.9192 < 6.3949] w=0.0691 to align # Constraint # added constraint: constraint((T0357)A92.CB, (T0357)P101.CB) [> 4.3029 = 7.1715 < 9.3230] w=0.0691 to align # Constraint # added constraint: constraint((T0357)L102.CB, (T0357)K115.CB) [> 3.3823 = 5.6371 < 7.3283] w=0.0691 to align # Constraint # added constraint: constraint((T0357)K80.CB, (T0357)G94.CA) [> 2.0697 = 3.4495 < 4.4844] w=0.0691 to align # Constraint # added constraint: constraint((T0357)I82.CB, (T0357)V120.CB) [> 4.5069 = 7.5115 < 9.7649] w=0.0691 to align # Constraint # added constraint: constraint((T0357)K85.CB, (T0357)M97.CB) [> 4.0697 = 6.7828 < 8.8176] w=0.0691 to align # Constraint # added constraint: constraint((T0357)C6.CB, (T0357)L19.CB) [> 4.3029 = 7.1715 < 9.3229] w=0.0677 to align # Constraint # added constraint: constraint((T0357)C6.CB, (T0357)T21.CB) [> 4.7648 = 7.9412 < 10.3236] w=0.0677 to align # Constraint # added constraint: constraint((T0357)R7.CB, (T0357)L19.CB) [> 2.5826 = 4.3043 < 5.5956] w=0.0677 to align # Constraint # added constraint: constraint((T0357)R7.CB, (T0357)T21.CB) [> 4.7155 = 7.8591 < 10.2169] w=0.0677 to align # Constraint # added constraint: constraint((T0357)I53.CB, (T0357)A92.CB) [> 3.4413 = 5.7356 < 7.4563] w=0.0677 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)V93.CB) [> 2.8941 = 4.8235 < 6.2705] w=0.0677 to align # Constraint # added constraint: constraint((T0357)L54.CB, (T0357)G94.CA) [> 3.7445 = 6.2408 < 8.1130] w=0.0677 to align # Constraint # added constraint: constraint((T0357)A5.CB, (T0357)K22.CB) [> 4.2010 = 7.0017 < 9.1022] w=0.0677 to align # Constraint # added constraint: constraint((T0357)A5.CB, (T0357)T21.CB) [> 2.5702 = 4.2836 < 5.5687] w=0.0677 to align # Constraint # added constraint: constraint((T0357)A5.CB, (T0357)V20.CB) [> 4.1412 = 6.9019 < 8.9725] w=0.0677 to align # Constraint # added constraint: constraint((T0357)A5.CB, (T0357)L19.CB) [> 4.7485 = 7.9142 < 10.2884] w=0.0677 to align # Constraint # added constraint: constraint((T0357)F4.CB, (T0357)K22.CB) [> 3.6751 = 6.1252 < 7.9628] w=0.0677 to align # Constraint # added constraint: constraint((T0357)F4.CB, (T0357)T21.CB) [> 4.5902 = 7.6503 < 9.9454] w=0.0677 to align # Constraint # added constraint: constraint((T0357)F4.CB, (T0357)V20.CB) [> 4.1535 = 6.9225 < 8.9992] w=0.0677 to align # Constraint # added constraint: constraint((T0357)K3.CB, (T0357)Y24.CB) [> 4.3153 = 7.1922 < 9.3499] w=0.0677 to align # Constraint # added constraint: constraint((T0357)N84.CB, (T0357)E108.CB) [> 4.6626 = 7.7710 < 10.1023] w=0.0677 to align # Constraint # added constraint: constraint((T0357)K80.CB, (T0357)V103.CB) [> 3.6876 = 6.1460 < 7.9899] w=0.0677 to align # Constraint # added constraint: constraint((T0357)V55.CB, (T0357)G94.CA) [> 2.8063 = 4.6772 < 6.0803] w=0.0677 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)A95.CB) [> 3.2731 = 5.4553 < 7.0918] w=0.0677 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)G94.CA) [> 3.1170 = 5.1950 < 6.7536] w=0.0677 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)A95.CB) [> 3.9745 = 6.6242 < 8.6114] w=0.0677 to align # Constraint # added constraint: constraint((T0357)P57.CB, (T0357)A96.CB) [> 3.6889 = 6.1482 < 7.9927] w=0.0677 to align # Constraint # added constraint: constraint((T0357)G58.CA, (T0357)A96.CB) [> 3.9426 = 6.5710 < 8.5422] w=0.0677 to align # Constraint # added constraint: constraint((T0357)I37.CB, (T0357)I82.CB) [> 2.9864 = 4.9773 < 6.4704] w=0.0664 to align # Constraint # added constraint: constraint((T0357)G29.CA, (T0357)V49.CB) [> 4.0142 = 6.6903 < 8.6974] w=0.0643 to align # Constraint # added constraint: constraint((T0357)G29.CA, (T0357)I53.CB) [> 4.0718 = 6.7864 < 8.8223] w=0.0643 to align # Constraint # added constraint: constraint((T0357)G30.CA, (T0357)I44.CB) [> 4.2649 = 7.1082 < 9.2406] w=0.0643 to align # Constraint # added constraint: constraint((T0357)G30.CA, (T0357)L54.CB) [> 4.7781 = 7.9635 < 10.3525] w=0.0643 to align # Constraint # added constraint: constraint((T0357)G30.CA, (T0357)V55.CB) [> 4.4912 = 7.4854 < 9.7310] w=0.0643 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)L54.CB) [> 3.0177 = 5.0294 < 6.5382] w=0.0642 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)V55.CB) [> 3.9167 = 6.5279 < 8.4862] w=0.0642 to align # Constraint # added constraint: constraint((T0357)I25.CB, (T0357)I82.CB) [> 4.7538 = 7.9231 < 10.3000] w=0.0642 to align # Constraint # added constraint: constraint((T0357)L28.CB, (T0357)V68.CB) [> 3.7769 = 6.2949 < 8.1834] w=0.0642 to align # Constraint # added constraint: constraint((T0357)G12.CA, (T0357)N123.CB) [> 4.0361 = 6.7268 < 8.7449] w=0.0642 to align # Constraint # added constraint: constraint((T0357)L19.CB, (T0357)I31.CB) [> 4.6825 = 7.8043 < 10.1455] w=0.0642 to align # Constraint # added constraint: constraint((T0357)V93.CB, (T0357)N123.CB) [> 4.1487 = 6.9145 < 8.9889] w=0.0642 to align # Constraint # added constraint: constraint((T0357)G36.CA, (T0357)R52.CB) [> 4.6279 = 7.7132 < 10.0272] w=0.0642 to align # Constraint # added constraint: constraint((T0357)F56.CB, (T0357)V103.CB) [> 4.3703 = 7.2839 < 9.4691] w=0.0642 to align # Constraint # added constraint: constraint((T0357)G58.CA, (T0357)V103.CB) [> 4.6027 = 7.6711 < 9.9724] w=0.0642 to align # Constraint # added constraint: constraint((T0357)N84.CB, (T0357)A96.CB) [> 3.8934 = 6.4890 < 8.4358] w=0.0642 to align # Constraint # added constraint: constraint((T0357)N84.CB, (T0357)M97.CB) [> 4.4424 = 7.4040 < 9.6251] w=0.0642 to align # Constraint # added constraint: constraint((T0357)K85.CB, (T0357)P101.CB) [> 4.1952 = 6.9920 < 9.0896] w=0.0642 to align # Constraint # added constraint: constraint((T0357)K85.CB, (T0357)V103.CB) [> 2.2083 = 3.6804 < 4.7846] w=0.0642 to align # Constraint # added constraint: constraint((T0357)E17.CB, (T0357)S26.CB) [> 4.5610 = 7.6017 < 9.8823] w=0.0610 to align # Constraint # added constraint: constraint((T0357)L70.CB, (T0357)I82.CB) [> 3.3153 = 5.5255 < 7.1831] w=0.0586 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)V64.CB) [> 2.5768 = 4.2946 < 5.5830] w=0.0579 to align # Constraint # added constraint: constraint((T0357)A18.CB, (T0357)Y67.CB) [> 4.3711 = 7.2851 < 9.4706] w=0.0579 to align # Constraint # added constraint: constraint((T0357)V20.CB, (T0357)V68.CB) [> 3.6930 = 6.1550 < 8.0016] w=0.0579 to align # Constraint # added constraint: constraint((T0357)I31.CB, (T0357)K80.CB) [> 4.5779 = 7.6298 < 9.9188] w=0.0579 to align # Constraint # added constraint: constraint((T0357)A113.CB, (T0357)G127.CA) [> 4.2098 = 7.0163 < 9.1213] w=0.0579 to align # Constraint # added constraint: constraint((T0357)I91.CB, (T0357)G127.CA) [> 4.3806 = 7.3010 < 9.4913] w=0.0579 to align # Constraint # added constraint: constraint((T0357)V68.CB, (T0357)I82.CB) [> 4.5849 = 7.6414 < 9.9339] w=0.0258 to align # Constraint # added constraint: constraint((T0357)N71.CB, (T0357)K80.CB) [> 4.0512 = 6.7520 < 8.7777] w=0.0258 to align # Constraint # added constraint: constraint((T0357)T87.CB, (T0357)Y128.CB) [> 3.0387 = 5.0645 < 6.5839] w=0.0172 to align # Constraint # added constraint: constraint((T0357)K86.CB, (T0357)Y128.CB) [> 4.4828 = 7.4713 < 9.7127] w=0.0172 to align # Constraint # added constraint: constraint((T0357)V68.CB, (T0357)A96.CB) [> 3.0057 = 5.0095 < 6.5124] w=0.0172 to align # Constraint # added constraint: constraint((T0357)E43.CB, (T0357)Y67.CB) [> 2.9156 = 4.8594 < 6.3172] w=0.0172 to align # Constraint # added constraint: constraint((T0357)V38.CB, (T0357)Y67.CB) [> 3.7816 = 6.3027 < 8.1935] w=0.0172 to align # Constraint # added constraint: constraint((T0357)E88.CB, (T0357)Y128.CB) [> 3.8297 = 6.3829 < 8.2978] w=0.0172 to align # Constraint # added constraint: constraint((T0357)A92.CB, (T0357)G127.CA) [> 4.2897 = 7.1495 < 9.2944] w=0.0172 to align # Constraint # added constraint: constraint((T0357)A92.CB, (T0357)Y128.CB) [> 4.6701 = 7.7835 < 10.1186] w=0.0172 to align # Constraint # added constraint: constraint((T0357)P101.CB, (T0357)A113.CB) [> 3.1846 = 5.3077 < 6.9000] w=0.0172 to align # Constraint # added constraint: constraint((T0357)K80.CB, (T0357)M97.CB) [> 4.7049 = 7.8416 < 10.1940] w=0.0086 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0357/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0357/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 26 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 125 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 Skipped atom 399, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL4.pdb.gz Skipped atom 401, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL4.pdb.gz Skipped atom 403, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL4.pdb.gz Skipped atom 405, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL4.pdb.gz Skipped atom 407, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL4.pdb.gz # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain '' from PDB file servers/MIG_FROST_AL1.pdb.gz failed---no such chain. # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 64 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 6 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0357)V64.O and (T0357)G65.N only 0.000 apart, marking (T0357)G65.N as missing # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0357)P57.O and (T0357)G58.N only 0.000 apart, marking (T0357)G58.N as missing WARNING: atoms too close: (T0357)L134.O and (T0357)E135.N only 0.000 apart, marking (T0357)E135.N as missing # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0357)K85.O and (T0357)K86.N only 0.000 apart, marking (T0357)K86.N as missing # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0357)P57.O and (T0357)G58.N only 0.000 apart, marking (T0357)G58.N as missing # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0357)Y67.N and (T0357)V68.N only 0.000 apart, marking (T0357)V68.N as missing WARNING: atoms too close: (T0357)Y67.CA and (T0357)V68.CA only 0.000 apart, marking (T0357)V68.CA as missing WARNING: atoms too close: (T0357)Y67.CB and (T0357)V68.CB only 0.000 apart, marking (T0357)V68.CB as missing WARNING: atoms too close: (T0357)Y67.CG and (T0357)V68.CG1 only 0.000 apart, marking (T0357)V68.CG1 as missing WARNING: atoms too close: (T0357)Y67.O and (T0357)V68.O only 0.000 apart, marking (T0357)V68.O as missing WARNING: atoms too close: (T0357)Y67.C and (T0357)V68.C only 0.000 apart, marking (T0357)V68.C as missing WARNING: atoms too close: (T0357)V68.N and (T0357)L69.N only 0.000 apart, marking (T0357)V68.N as missing WARNING: atoms too close: (T0357)Y67.N and (T0357)L69.N only 0.000 apart, marking (T0357)L69.N as missing WARNING: atoms too close: (T0357)V68.CA and (T0357)L69.CA only 0.000 apart, marking (T0357)L69.CA as missing WARNING: atoms too close: (T0357)Y67.CA and (T0357)L69.CA only 0.000 apart, marking (T0357)L69.CA as missing WARNING: atoms too close: (T0357)V68.CB and (T0357)L69.CB only 0.000 apart, marking (T0357)L69.CB as missing WARNING: atoms too close: (T0357)Y67.CB and (T0357)L69.CB only 0.000 apart, marking (T0357)L69.CB as missing WARNING: atoms too close: (T0357)V68.CG1 and (T0357)L69.CG only 0.000 apart, marking (T0357)L69.CG as missing WARNING: atoms too close: (T0357)Y67.CG and (T0357)L69.CG only 0.000 apart, marking (T0357)L69.CG as missing WARNING: atoms too close: (T0357)V68.O and (T0357)L69.O only 0.000 apart, marking (T0357)L69.O as missing WARNING: atoms too close: (T0357)Y67.O and (T0357)L69.O only 0.000 apart, marking (T0357)L69.O as missing WARNING: atoms too close: (T0357)V68.C and (T0357)L69.C only 0.000 apart, marking (T0357)L69.C as missing WARNING: atoms too close: (T0357)Y67.C and (T0357)L69.C only 0.000 apart, marking (T0357)L69.C as missing WARNING: atoms too close: (T0357)L69.N and (T0357)E108.N only 0.000 apart, marking (T0357)L69.N as missing WARNING: atoms too close: (T0357)V68.N and (T0357)E108.N only 0.000 apart, marking (T0357)V68.N as missing WARNING: atoms too close: (T0357)Y67.N and (T0357)E108.N only 0.000 apart, marking (T0357)E108.N as missing WARNING: atoms too close: (T0357)L69.CA and (T0357)E108.CA only 0.000 apart, marking (T0357)E108.CA as missing WARNING: atoms too close: (T0357)V68.CA and (T0357)E108.CA only 0.000 apart, marking (T0357)E108.CA as missing WARNING: atoms too close: (T0357)Y67.CA and (T0357)E108.CA only 0.000 apart, marking (T0357)E108.CA as missing WARNING: atoms too close: (T0357)L69.CB and (T0357)E108.CB only 0.000 apart, marking (T0357)E108.CB as missing WARNING: atoms too close: (T0357)V68.CB and (T0357)E108.CB only 0.000 apart, marking (T0357)E108.CB as missing WARNING: atoms too close: (T0357)Y67.CB and (T0357)E108.CB only 0.000 apart, marking (T0357)E108.CB as missing WARNING: atoms too close: (T0357)L69.CG and (T0357)E108.CG only 0.000 apart, marking (T0357)E108.CG as missing WARNING: atoms too close: (T0357)V68.CG1 and (T0357)E108.CG only 0.000 apart, marking (T0357)E108.CG as missing WARNING: atoms too close: (T0357)Y67.CG and (T0357)E108.CG only 0.000 apart, marking (T0357)E108.CG as missing WARNING: atoms too close: (T0357)L69.O and (T0357)E108.O only 0.000 apart, marking (T0357)E108.O as missing WARNING: atoms too close: (T0357)V68.O and (T0357)E108.O only 0.000 apart, marking (T0357)E108.O as missing WARNING: atoms too close: (T0357)Y67.O and (T0357)E108.O only 0.000 apart, marking (T0357)E108.O as missing WARNING: atoms too close: (T0357)L69.C and (T0357)E108.C only 0.000 apart, marking (T0357)E108.C as missing WARNING: atoms too close: (T0357)V68.C and (T0357)E108.C only 0.000 apart, marking (T0357)E108.C as missing WARNING: atoms too close: (T0357)Y67.C and (T0357)E108.C only 0.000 apart, marking (T0357)E108.C as missing WARNING: atoms too close: (T0357)E108.N and (T0357)K109.N only 0.000 apart, marking (T0357)E108.N as missing WARNING: atoms too close: (T0357)L69.N and (T0357)K109.N only 0.000 apart, marking (T0357)L69.N as missing WARNING: atoms too close: (T0357)V68.N and (T0357)K109.N only 0.000 apart, marking (T0357)V68.N as missing WARNING: atoms too close: (T0357)Y67.N and (T0357)K109.N only 0.000 apart, marking (T0357)K109.N as missing WARNING: atoms too close: (T0357)E108.CA and (T0357)K109.CA only 0.000 apart, marking (T0357)K109.CA as missing WARNING: atoms too close: (T0357)L69.CA and (T0357)K109.CA only 0.000 apart, marking (T0357)K109.CA as missing WARNING: atoms too close: (T0357)V68.CA and (T0357)K109.CA only 0.000 apart, marking (T0357)K109.CA as missing WARNING: atoms too close: (T0357)Y67.CA and (T0357)K109.CA only 0.000 apart, marking (T0357)K109.CA as missing WARNING: atoms too close: (T0357)E108.CB and (T0357)K109.CB only 0.000 apart, marking (T0357)K109.CB as missing WARNING: atoms too close: (T0357)L69.CB and (T0357)K109.CB only 0.000 apart, marking (T0357)K109.CB as missing WARNING: atoms too close: (T0357)V68.CB and (T0357)K109.CB only 0.000 apart, marking (T0357)K109.CB as missing WARNING: atoms too close: (T0357)Y67.CB and (T0357)K109.CB only 0.000 apart, marking (T0357)K109.CB as missing WARNING: atoms too close: (T0357)E108.CG and (T0357)K109.CG only 0.000 apart, marking (T0357)K109.CG as missing WARNING: atoms too close: (T0357)L69.CG and (T0357)K109.CG only 0.000 apart, marking (T0357)K109.CG as missing WARNING: atoms too close: (T0357)V68.CG1 and (T0357)K109.CG only 0.000 apart, marking (T0357)K109.CG as missing WARNING: atoms too close: (T0357)Y67.CG and (T0357)K109.CG only 0.000 apart, marking (T0357)K109.CG as missing WARNING: atoms too close: (T0357)E108.O and (T0357)K109.O only 0.000 apart, marking (T0357)K109.O as missing WARNING: atoms too close: (T0357)L69.O and (T0357)K109.O only 0.000 apart, marking (T0357)K109.O as missing WARNING: atoms too close: (T0357)V68.O and (T0357)K109.O only 0.000 apart, marking (T0357)K109.O as missing WARNING: atoms too close: (T0357)Y67.O and (T0357)K109.O only 0.000 apart, marking (T0357)K109.O as missing WARNING: atoms too close: (T0357)E108.C and (T0357)K109.C only 0.000 apart, marking (T0357)K109.C as missing WARNING: atoms too close: (T0357)L69.C and (T0357)K109.C only 0.000 apart, marking (T0357)K109.C as missing WARNING: atoms too close: (T0357)V68.C and (T0357)K109.C only 0.000 apart, marking (T0357)K109.C as missing WARNING: atoms too close: (T0357)Y67.C and (T0357)K109.C only 0.000 apart, marking (T0357)K109.C as missing WARNING: atoms too close: (T0357)K109.N and (T0357)F110.N only 0.000 apart, marking (T0357)K109.N as missing WARNING: atoms too close: (T0357)E108.N and (T0357)F110.N only 0.000 apart, marking (T0357)E108.N as missing WARNING: atoms too close: (T0357)L69.N and (T0357)F110.N only 0.000 apart, marking (T0357)L69.N as missing WARNING: atoms too close: (T0357)V68.N and (T0357)F110.N only 0.000 apart, marking (T0357)V68.N as missing WARNING: atoms too close: (T0357)Y67.N and (T0357)F110.N only 0.000 apart, marking (T0357)F110.N as missing WARNING: atoms too close: (T0357)K109.CA and (T0357)F110.CA only 0.000 apart, marking (T0357)F110.CA as missing WARNING: atoms too close: (T0357)E108.CA and (T0357)F110.CA only 0.000 apart, marking (T0357)F110.CA as missing WARNING: atoms too close: (T0357)L69.CA and (T0357)F110.CA only 0.000 apart, marking (T0357)F110.CA as missing WARNING: atoms too close: (T0357)V68.CA and (T0357)F110.CA only 0.000 apart, marking (T0357)F110.CA as missing WARNING: atoms too close: (T0357)Y67.CA and (T0357)F110.CA only 0.000 apart, marking (T0357)F110.CA as missing WARNING: atoms too close: (T0357)K109.CB and (T0357)F110.CB only 0.000 apart, marking (T0357)F110.CB as missing WARNING: atoms too close: (T0357)E108.CB and (T0357)F110.CB only 0.000 apart, marking (T0357)F110.CB as missing WARNING: atoms too close: (T0357)L69.CB and (T0357)F110.CB only 0.000 apart, marking (T0357)F110.CB as missing WARNING: atoms too close: (T0357)V68.CB and (T0357)F110.CB only 0.000 apart, marking (T0357)F110.CB as missing WARNING: atoms too close: (T0357)Y67.CB and (T0357)F110.CB only 0.000 apart, marking (T0357)F110.CB as missing WARNING: atoms too close: (T0357)K109.CG and (T0357)F110.CG only 0.000 apart, marking (T0357)F110.CG as missing WARNING: atoms too close: (T0357)E108.CG and (T0357)F110.CG only 0.000 apart, marking (T0357)F110.CG as missing WARNING: atoms too close: (T0357)L69.CG and (T0357)F110.CG only 0.000 apart, marking (T0357)F110.CG as missing WARNING: atoms too close: (T0357)V68.CG1 and (T0357)F110.CG only 0.000 apart, marking (T0357)F110.CG as missing WARNING: atoms too close: (T0357)Y67.CG and (T0357)F110.CG only 0.000 apart, marking (T0357)F110.CG as missing WARNING: atoms too close: (T0357)K109.O and (T0357)F110.O only 0.000 apart, marking (T0357)F110.O as missing WARNING: atoms too close: (T0357)E108.O and (T0357)F110.O only 0.000 apart, marking (T0357)F110.O as missing WARNING: atoms too close: (T0357)L69.O and (T0357)F110.O only 0.000 apart, marking (T0357)F110.O as missing WARNING: atoms too close: (T0357)V68.O and (T0357)F110.O only 0.000 apart, marking (T0357)F110.O as missing WARNING: atoms too close: (T0357)Y67.O and (T0357)F110.O only 0.000 apart, marking (T0357)F110.O as missing WARNING: atoms too close: (T0357)K109.C and (T0357)F110.C only 0.000 apart, marking (T0357)F110.C as missing WARNING: atoms too close: (T0357)E108.C and (T0357)F110.C only 0.000 apart, marking (T0357)F110.C as missing WARNING: atoms too close: (T0357)L69.C and (T0357)F110.C only 0.000 apart, marking (T0357)F110.C as missing WARNING: atoms too close: (T0357)V68.C and (T0357)F110.C only 0.000 apart, marking (T0357)F110.C as missing WARNING: atoms too close: (T0357)Y67.C and (T0357)F110.C only 0.000 apart, marking (T0357)F110.C as missing WARNING: atoms too close: (T0357)F110.N and (T0357)F111.N only 0.000 apart, marking (T0357)F110.N as missing WARNING: atoms too close: (T0357)K109.N and (T0357)F111.N only 0.000 apart, marking (T0357)K109.N as missing WARNING: atoms too close: (T0357)E108.N and (T0357)F111.N only 0.000 apart, marking (T0357)E108.N as missing WARNING: atoms too close: (T0357)L69.N and (T0357)F111.N only 0.000 apart, marking (T0357)L69.N as missing WARNING: atoms too close: (T0357)V68.N and (T0357)F111.N only 0.000 apart, marking (T0357)V68.N as missing WARNING: atoms too close: (T0357)Y67.N and (T0357)F111.N only 0.000 apart, marking (T0357)F111.N as missing WARNING: atoms too close: (T0357)F110.CA and (T0357)F111.CA only 0.000 apart, marking (T0357)F111.CA as missing WARNING: atoms too close: (T0357)K109.CA and (T0357)F111.CA only 0.000 apart, marking (T0357)F111.CA as missing WARNING: atoms too close: (T0357)E108.CA and (T0357)F111.CA only 0.000 apart, marking (T0357)F111.CA as missing WARNING: atoms too close: (T0357)L69.CA and (T0357)F111.CA only 0.000 apart, marking (T0357)F111.CA as missing WARNING: atoms too close: (T0357)V68.CA and (T0357)F111.CA only 0.000 apart, marking (T0357)F111.CA as missing WARNING: atoms too close: (T0357)Y67.CA and (T0357)F111.CA only 0.000 apart, marking (T0357)F111.CA as missing WARNING: atoms too close: (T0357)F110.CB and (T0357)F111.CB only 0.000 apart, marking (T0357)F111.CB as missing WARNING: atoms too close: (T0357)K109.CB and (T0357)F111.CB only 0.000 apart, marking (T0357)F111.CB as missing WARNING: atoms too close: (T0357)E108.CB and (T0357)F111.CB only 0.000 apart, marking (T0357)F111.CB as missing WARNING: atoms too close: (T0357)L69.CB and (T0357)F111.CB only 0.000 apart, marking (T0357)F111.CB as missing WARNING: atoms too close: (T0357)V68.CB and (T0357)F111.CB only 0.000 apart, marking (T0357)F111.CB as missing WARNING: atoms too close: (T0357)Y67.CB and (T0357)F111.CB only 0.000 apart, marking (T0357)F111.CB as missing WARNING: atoms too close: (T0357)F110.CG and (T0357)F111.CG only 0.000 apart, marking (T0357)F111.CG as missing WARNING: atoms too close: (T0357)K109.CG and (T0357)F111.CG only 0.000 apart, marking (T0357)F111.CG as missing WARNING: atoms too close: (T0357)E108.CG and (T0357)F111.CG only 0.000 apart, marking (T0357)F111.CG as missing WARNING: atoms too close: (T0357)L69.CG and (T0357)F111.CG only 0.000 apart, marking (T0357)F111.CG as missing WARNING: atoms too close: (T0357)V68.CG1 and (T0357)F111.CG only 0.000 apart, marking (T0357)F111.CG as missing WARNING: atoms too close: (T0357)Y67.CG and (T0357)F111.CG only 0.000 apart, marking (T0357)F111.CG as missing WARNING: atoms too close: (T0357)F110.O and (T0357)F111.O only 0.000 apart, marking (T0357)F111.O as missing WARNING: atoms too close: (T0357)K109.O and (T0357)F111.O only 0.000 apart, marking (T0357)F111.O as missing WARNING: atoms too close: (T0357)E108.O and (T0357)F111.O only 0.000 apart, marking (T0357)F111.O as missing WARNING: atoms too close: (T0357)L69.O and (T0357)F111.O only 0.000 apart, marking (T0357)F111.O as missing WARNING: atoms too close: (T0357)V68.O and (T0357)F111.O only 0.000 apart, marking (T0357)F111.O as missing WARNING: atoms too close: (T0357)Y67.O and (T0357)F111.O only 0.000 apart, marking (T0357)F111.O as missing WARNING: atoms too close: (T0357)F110.C and (T0357)F111.C only 0.000 apart, marking (T0357)F111.C as missing WARNING: atoms too close: (T0357)K109.C and (T0357)F111.C only 0.000 apart, marking (T0357)F111.C as missing WARNING: atoms too close: (T0357)E108.C and (T0357)F111.C only 0.000 apart, marking (T0357)F111.C as missing WARNING: atoms too close: (T0357)L69.C and (T0357)F111.C only 0.000 apart, marking (T0357)F111.C as missing WARNING: atoms too close: (T0357)V68.C and (T0357)F111.C only 0.000 apart, marking (T0357)F111.C as missing WARNING: atoms too close: (T0357)Y67.C and (T0357)F111.C only 0.000 apart, marking (T0357)F111.C as missing # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0357 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 1.6353 model score 2.2968 model score 1.8934 model score 1.4982 model score 1.6357 model score 1.3375 model score 1.3408 model score 1.3823 model score 1.5585 model score 1.3408 model score 1.2203 model score 1.3390 model score 1.4569 model score 1.4178 model score 1.7215 model score 1.1997 model score 1.1793 model score 2.0532 model score 1.6557 model score 1.3173 model score 1.3173 model score 1.3805 model score 1.3730 model score 1.3954 model score 1.2989 model score 0.9325 model score 0.8598 model score 0.7664 model score 0.7904 model score 0.9398 model score 0.8311 model score 1.1315 model score 1.3129 model score 0.6752 model score 1.6206 model score 1.4458 model score 1.7678 model score 1.2879 model score 1.2850 model score 1.2891 model score 1.2761 model score 1.2900 model score 1.0930 model score 1.1647 model score 0.8564 model score 1.0459 model score 1.0489 model score 1.0147 model score 0.7664 model score 1.0489 model score 1.1315 model score 1.0459 model score 1.1997 model score 1.7418 model score 1.9058 model score 1.4143 model score 2.1470 model score 1.2725 model score 1.2700 model score 1.2780 model score 1.2800 model score 1.2926 model score 1.2725 model score 1.2704 model score 1.2765 model score 1.2791 model score 1.2800 model score 1.9125 model score 1.9640 model score 1.9692 model score 2.1897 model score 2.3422 model score 0.8688 model score 1.5323 model score 1.5948 model score 1.9064 model score 1.6921 model score 1.2674 model score 1.2842 model score 1.2719 model score 1.2768 model score 1.2753 model score 1.2754 model score 1.1358 model score 1.0401 model score 1.4289 model score 1.3526 model score 0.8253 model score 0.8659 model score 0.8356 model score 1.0689 model score 1.0156 model score 1.0695 model score 1.0432 model score 1.0432 model score 1.2771 model score 1.2771 model score 1.4578 model score 1.0884 model score 0.9781 model score 1.5261 model score 0.7532 model score 1.5856 model score 1.2291 model score 1.4617 model score 0.7611 model score 1.1118 model score 1.3977 model score 1.6962 model score 0.8831 model score 0.7557 model score 1.1355 model score 1.1393 model score 1.4328 model score 0.8831 model score 0.7231 model score 0.8214 model score 0.7293 model score 0.9119 model score 0.8195 model score 1.2674 model score 1.9243 model score 1.8081 model score 1.6573 model score 1.7419 model score 1.8610 model score 1.0818 model score 1.0861 model score 1.1002 model score 1.0907 model score 1.1388 model score 1.0614 model score 1.3570 model score 1.0484 model score 1.0933 model score 1.1332 model score 0.9543 model score 1.0287 model score 1.0499 model score 1.0367 model score 1.0571 model score 0.9778 model score 0.9057 model score 1.0068 model score 1.0081 model score 0.9629 model score 0.9643 model score 0.9067 model score 0.7917 model score 0.8153 model score 1.0499 model score 0.9651 model score 0.7841 model score 0.8633 model score 0.7553 model score 0.8344 model score 0.8131 model score 0.9654 model score 0.7727 model score 0.9584 model score 0.7474 model score 1.1699 model score 0.7750 model score 0.9247 model score 0.7440 model score 1.1614 model score 0.9437 model score 1.0127 model score 1.1151 model score 0.7917 model score 0.9067 model score 0.9154 model score 1.2436 model score 1.1571 model score 1.1926 model score 1.1429 model score 1.1792 model score 1.2691 model score 1.2771 model score 1.2823 model score 1.2782 model score 1.2861 model score 1.2773 model score 1.2773 model score 1.2898 model score 1.0462 model score 0.9300 model score 0.8163 model score 1.0926 model score 0.9746 model score 0.7553 model score 0.8131 model score 1.2188 model score 1.5210 model score 0.8344 model score 0.8160 model score 0.8375 model score 1.1024 model score 1.5413 model score 1.4066 model score 0.7703 model score 0.9247 model score 1.8838 model score 2.3362 model score 1.8565 model score 1.2762 model score 1.2786 model score 1.2746 model score 1.2751 model score 1.2756 model score 0.9200 model score 1.2704 model score 1.2724 model score 1.2746 model score 0.6148 model score 0.6174 model score 0.6422 model score 0.5884 model score 0.6836 model score 0.8559 model score 1.0722 model score 1.2703 model score 1.2771 model score 1.2775 model score 1.2771 model score 1.2838 model score 0.8809 model score 1.1481 model score 1.2394 model score 1.5194 model score 1.4863 model score 2.0156 model score 2.0702 model score 1.7723 model score 2.0571 model score 2.4168 model score 1.0135 model score 1.0620 model score 1.3099 model score 0.9219 model score 1.3494 model score 1.0678 model score 1.5882 model score 1.1130 model score 0.9060 model score 1.2691 model score 1.7871 model score 1.6401 model score 1.1735 model score 1.4125 model score 1.2647 model score 1.3880 model score 1.0941 model score 0.9809 USE_META, weight: 0.4847 cost: 1.6353 min: 0.5884 max: 2.4168 USE_META, weight: 0.1590 cost: 2.2968 min: 0.5884 max: 2.4168 USE_META, weight: 0.3576 cost: 1.8934 min: 0.5884 max: 2.4168 USE_META, weight: 0.5522 cost: 1.4982 min: 0.5884 max: 2.4168 USE_META, weight: 0.4845 cost: 1.6357 min: 0.5884 max: 2.4168 USE_META, weight: 0.6313 cost: 1.3375 min: 0.5884 max: 2.4168 USE_META, weight: 0.6296 cost: 1.3408 min: 0.5884 max: 2.4168 USE_META, weight: 0.6092 cost: 1.3823 min: 0.5884 max: 2.4168 USE_META, weight: 0.5225 cost: 1.5585 min: 0.5884 max: 2.4168 USE_META, weight: 0.6296 cost: 1.3408 min: 0.5884 max: 2.4168 USE_META, weight: 0.6890 cost: 1.2203 min: 0.5884 max: 2.4168 USE_META, weight: 0.6305 cost: 1.3390 min: 0.5884 max: 2.4168 USE_META, weight: 0.5725 cost: 1.4569 min: 0.5884 max: 2.4168 USE_META, weight: 0.5917 cost: 1.4178 min: 0.5884 max: 2.4168 USE_META, weight: 0.4422 cost: 1.7215 min: 0.5884 max: 2.4168 USE_META, weight: 0.6991 cost: 1.1997 min: 0.5884 max: 2.4168 USE_META, weight: 0.7091 cost: 1.1793 min: 0.5884 max: 2.4168 USE_META, weight: 0.2790 cost: 2.0532 min: 0.5884 max: 2.4168 USE_META, weight: 0.4746 cost: 1.6557 min: 0.5884 max: 2.4168 USE_META, weight: 0.6412 cost: 1.3173 min: 0.5884 max: 2.4168 USE_META, weight: 0.6412 cost: 1.3173 min: 0.5884 max: 2.4168 USE_META, weight: 0.6101 cost: 1.3805 min: 0.5884 max: 2.4168 USE_META, weight: 0.6138 cost: 1.3730 min: 0.5884 max: 2.4168 USE_META, weight: 0.6028 cost: 1.3954 min: 0.5884 max: 2.4168 USE_META, weight: 0.6502 cost: 1.2989 min: 0.5884 max: 2.4168 USE_META, weight: 0.8306 cost: 0.9325 min: 0.5884 max: 2.4168 USE_META, weight: 0.8664 cost: 0.8598 min: 0.5884 max: 2.4168 USE_META, weight: 0.9123 cost: 0.7664 min: 0.5884 max: 2.4168 USE_META, weight: 0.9006 cost: 0.7904 min: 0.5884 max: 2.4168 USE_META, weight: 0.8270 cost: 0.9398 min: 0.5884 max: 2.4168 USE_META, weight: 0.8805 cost: 0.8311 min: 0.5884 max: 2.4168 USE_META, weight: 0.7327 cost: 1.1315 min: 0.5884 max: 2.4168 USE_META, weight: 0.6434 cost: 1.3129 min: 0.5884 max: 2.4168 USE_META, weight: 0.9572 cost: 0.6752 min: 0.5884 max: 2.4168 USE_META, weight: 0.4919 cost: 1.6206 min: 0.5884 max: 2.4168 USE_META, weight: 0.5779 cost: 1.4458 min: 0.5884 max: 2.4168 USE_META, weight: 0.4195 cost: 1.7678 min: 0.5884 max: 2.4168 USE_META, weight: 0.6557 cost: 1.2879 min: 0.5884 max: 2.4168 USE_META, weight: 0.6571 cost: 1.2850 min: 0.5884 max: 2.4168 USE_META, weight: 0.6551 cost: 1.2891 min: 0.5884 max: 2.4168 USE_META, weight: 0.6615 cost: 1.2761 min: 0.5884 max: 2.4168 USE_META, weight: 0.6546 cost: 1.2900 min: 0.5884 max: 2.4168 USE_META, weight: 0.7516 cost: 1.0930 min: 0.5884 max: 2.4168 USE_META, weight: 0.7163 cost: 1.1647 min: 0.5884 max: 2.4168 USE_META, weight: 0.8681 cost: 0.8564 min: 0.5884 max: 2.4168 USE_META, weight: 0.7748 cost: 1.0459 min: 0.5884 max: 2.4168 USE_META, weight: 0.7733 cost: 1.0489 min: 0.5884 max: 2.4168 USE_META, weight: 0.7901 cost: 1.0147 min: 0.5884 max: 2.4168 USE_META, weight: 0.9123 cost: 0.7664 min: 0.5884 max: 2.4168 USE_META, weight: 0.7733 cost: 1.0489 min: 0.5884 max: 2.4168 USE_META, weight: 0.7327 cost: 1.1315 min: 0.5884 max: 2.4168 USE_META, weight: 0.7748 cost: 1.0459 min: 0.5884 max: 2.4168 USE_META, weight: 0.6991 cost: 1.1997 min: 0.5884 max: 2.4168 USE_META, weight: 0.4323 cost: 1.7418 min: 0.5884 max: 2.4168 USE_META, weight: 0.3515 cost: 1.9058 min: 0.5884 max: 2.4168 USE_META, weight: 0.5934 cost: 1.4143 min: 0.5884 max: 2.4168 USE_META, weight: 0.2328 cost: 2.1470 min: 0.5884 max: 2.4168 USE_META, weight: 0.6633 cost: 1.2725 min: 0.5884 max: 2.4168 USE_META, weight: 0.6645 cost: 1.2700 min: 0.5884 max: 2.4168 USE_META, weight: 0.6606 cost: 1.2780 min: 0.5884 max: 2.4168 USE_META, weight: 0.6595 cost: 1.2800 min: 0.5884 max: 2.4168 USE_META, weight: 0.6533 cost: 1.2926 min: 0.5884 max: 2.4168 USE_META, weight: 0.6633 cost: 1.2725 min: 0.5884 max: 2.4168 USE_META, weight: 0.6643 cost: 1.2704 min: 0.5884 max: 2.4168 USE_META, weight: 0.6613 cost: 1.2765 min: 0.5884 max: 2.4168 USE_META, weight: 0.6600 cost: 1.2791 min: 0.5884 max: 2.4168 USE_META, weight: 0.6595 cost: 1.2800 min: 0.5884 max: 2.4168 USE_META, weight: 0.3482 cost: 1.9125 min: 0.5884 max: 2.4168 USE_META, weight: 0.3229 cost: 1.9640 min: 0.5884 max: 2.4168 USE_META, weight: 0.3203 cost: 1.9692 min: 0.5884 max: 2.4168 USE_META, weight: 0.2118 cost: 2.1897 min: 0.5884 max: 2.4168 USE_META, weight: 0.1367 cost: 2.3422 min: 0.5884 max: 2.4168 USE_META, weight: 0.8619 cost: 0.8688 min: 0.5884 max: 2.4168 USE_META, weight: 0.5354 cost: 1.5323 min: 0.5884 max: 2.4168 USE_META, weight: 0.5046 cost: 1.5948 min: 0.5884 max: 2.4168 USE_META, weight: 0.3512 cost: 1.9064 min: 0.5884 max: 2.4168 USE_META, weight: 0.4567 cost: 1.6921 min: 0.5884 max: 2.4168 USE_META, weight: 0.6658 cost: 1.2674 min: 0.5884 max: 2.4168 USE_META, weight: 0.6575 cost: 1.2842 min: 0.5884 max: 2.4168 USE_META, weight: 0.6635 cost: 1.2719 min: 0.5884 max: 2.4168 USE_META, weight: 0.6611 cost: 1.2768 min: 0.5884 max: 2.4168 USE_META, weight: 0.6619 cost: 1.2753 min: 0.5884 max: 2.4168 USE_META, weight: 0.6618 cost: 1.2754 min: 0.5884 max: 2.4168 USE_META, weight: 0.7305 cost: 1.1358 min: 0.5884 max: 2.4168 USE_META, weight: 0.7777 cost: 1.0401 min: 0.5884 max: 2.4168 USE_META, weight: 0.5863 cost: 1.4289 min: 0.5884 max: 2.4168 USE_META, weight: 0.6238 cost: 1.3526 min: 0.5884 max: 2.4168 USE_META, weight: 0.8834 cost: 0.8253 min: 0.5884 max: 2.4168 USE_META, weight: 0.8634 cost: 0.8659 min: 0.5884 max: 2.4168 USE_META, weight: 0.8783 cost: 0.8356 min: 0.5884 max: 2.4168 USE_META, weight: 0.7635 cost: 1.0689 min: 0.5884 max: 2.4168 USE_META, weight: 0.7897 cost: 1.0156 min: 0.5884 max: 2.4168 USE_META, weight: 0.7632 cost: 1.0695 min: 0.5884 max: 2.4168 USE_META, weight: 0.7761 cost: 1.0432 min: 0.5884 max: 2.4168 USE_META, weight: 0.7761 cost: 1.0432 min: 0.5884 max: 2.4168 USE_META, weight: 0.6610 cost: 1.2771 min: 0.5884 max: 2.4168 USE_META, weight: 0.6610 cost: 1.2771 min: 0.5884 max: 2.4168 USE_META, weight: 0.5721 cost: 1.4578 min: 0.5884 max: 2.4168 USE_META, weight: 0.7539 cost: 1.0884 min: 0.5884 max: 2.4168 USE_META, weight: 0.8081 cost: 0.9781 min: 0.5884 max: 2.4168 USE_META, weight: 0.5384 cost: 1.5261 min: 0.5884 max: 2.4168 USE_META, weight: 0.9189 cost: 0.7532 min: 0.5884 max: 2.4168 USE_META, weight: 0.5091 cost: 1.5856 min: 0.5884 max: 2.4168 USE_META, weight: 0.6846 cost: 1.2291 min: 0.5884 max: 2.4168 USE_META, weight: 0.5701 cost: 1.4617 min: 0.5884 max: 2.4168 USE_META, weight: 0.9150 cost: 0.7611 min: 0.5884 max: 2.4168 USE_META, weight: 0.7423 cost: 1.1118 min: 0.5884 max: 2.4168 USE_META, weight: 0.6016 cost: 1.3977 min: 0.5884 max: 2.4168 USE_META, weight: 0.4547 cost: 1.6962 min: 0.5884 max: 2.4168 USE_META, weight: 0.8549 cost: 0.8831 min: 0.5884 max: 2.4168 USE_META, weight: 0.9176 cost: 0.7557 min: 0.5884 max: 2.4168 USE_META, weight: 0.7307 cost: 1.1355 min: 0.5884 max: 2.4168 USE_META, weight: 0.7288 cost: 1.1393 min: 0.5884 max: 2.4168 USE_META, weight: 0.5843 cost: 1.4328 min: 0.5884 max: 2.4168 USE_META, weight: 0.8549 cost: 0.8831 min: 0.5884 max: 2.4168 USE_META, weight: 0.9337 cost: 0.7231 min: 0.5884 max: 2.4168 USE_META, weight: 0.8853 cost: 0.8214 min: 0.5884 max: 2.4168 USE_META, weight: 0.9306 cost: 0.7293 min: 0.5884 max: 2.4168 USE_META, weight: 0.8408 cost: 0.9119 min: 0.5884 max: 2.4168 USE_META, weight: 0.8862 cost: 0.8195 min: 0.5884 max: 2.4168 USE_META, weight: 0.6658 cost: 1.2674 min: 0.5884 max: 2.4168 USE_META, weight: 0.3424 cost: 1.9243 min: 0.5884 max: 2.4168 USE_META, weight: 0.3996 cost: 1.8081 min: 0.5884 max: 2.4168 USE_META, weight: 0.4739 cost: 1.6573 min: 0.5884 max: 2.4168 USE_META, weight: 0.4322 cost: 1.7419 min: 0.5884 max: 2.4168 USE_META, weight: 0.3736 cost: 1.8610 min: 0.5884 max: 2.4168 USE_META, weight: 0.7571 cost: 1.0818 min: 0.5884 max: 2.4168 USE_META, weight: 0.7550 cost: 1.0861 min: 0.5884 max: 2.4168 USE_META, weight: 0.7481 cost: 1.1002 min: 0.5884 max: 2.4168 USE_META, weight: 0.7527 cost: 1.0907 min: 0.5884 max: 2.4168 USE_META, weight: 0.7291 cost: 1.1388 min: 0.5884 max: 2.4168 USE_META, weight: 0.7672 cost: 1.0614 min: 0.5884 max: 2.4168 USE_META, weight: 0.6217 cost: 1.3570 min: 0.5884 max: 2.4168 USE_META, weight: 0.7735 cost: 1.0484 min: 0.5884 max: 2.4168 USE_META, weight: 0.7514 cost: 1.0933 min: 0.5884 max: 2.4168 USE_META, weight: 0.7318 cost: 1.1332 min: 0.5884 max: 2.4168 USE_META, weight: 0.8199 cost: 0.9543 min: 0.5884 max: 2.4168 USE_META, weight: 0.7833 cost: 1.0287 min: 0.5884 max: 2.4168 USE_META, weight: 0.7728 cost: 1.0499 min: 0.5884 max: 2.4168 USE_META, weight: 0.7793 cost: 1.0367 min: 0.5884 max: 2.4168 USE_META, weight: 0.7693 cost: 1.0571 min: 0.5884 max: 2.4168 USE_META, weight: 0.8083 cost: 0.9778 min: 0.5884 max: 2.4168 USE_META, weight: 0.8438 cost: 0.9057 min: 0.5884 max: 2.4168 USE_META, weight: 0.7940 cost: 1.0068 min: 0.5884 max: 2.4168 USE_META, weight: 0.7934 cost: 1.0081 min: 0.5884 max: 2.4168 USE_META, weight: 0.8156 cost: 0.9629 min: 0.5884 max: 2.4168 USE_META, weight: 0.8150 cost: 0.9643 min: 0.5884 max: 2.4168 USE_META, weight: 0.8433 cost: 0.9067 min: 0.5884 max: 2.4168 USE_META, weight: 0.8999 cost: 0.7917 min: 0.5884 max: 2.4168 USE_META, weight: 0.8883 cost: 0.8153 min: 0.5884 max: 2.4168 USE_META, weight: 0.7728 cost: 1.0499 min: 0.5884 max: 2.4168 USE_META, weight: 0.8146 cost: 0.9651 min: 0.5884 max: 2.4168 USE_META, weight: 0.9037 cost: 0.7841 min: 0.5884 max: 2.4168 USE_META, weight: 0.8646 cost: 0.8633 min: 0.5884 max: 2.4168 USE_META, weight: 0.9178 cost: 0.7553 min: 0.5884 max: 2.4168 USE_META, weight: 0.8789 cost: 0.8344 min: 0.5884 max: 2.4168 USE_META, weight: 0.8894 cost: 0.8131 min: 0.5884 max: 2.4168 USE_META, weight: 0.8144 cost: 0.9654 min: 0.5884 max: 2.4168 USE_META, weight: 0.9093 cost: 0.7727 min: 0.5884 max: 2.4168 USE_META, weight: 0.8179 cost: 0.9584 min: 0.5884 max: 2.4168 USE_META, weight: 0.9217 cost: 0.7474 min: 0.5884 max: 2.4168 USE_META, weight: 0.7137 cost: 1.1699 min: 0.5884 max: 2.4168 USE_META, weight: 0.9081 cost: 0.7750 min: 0.5884 max: 2.4168 USE_META, weight: 0.8344 cost: 0.9247 min: 0.5884 max: 2.4168 USE_META, weight: 0.9234 cost: 0.7440 min: 0.5884 max: 2.4168 USE_META, weight: 0.7179 cost: 1.1614 min: 0.5884 max: 2.4168 USE_META, weight: 0.8251 cost: 0.9437 min: 0.5884 max: 2.4168 USE_META, weight: 0.7911 cost: 1.0127 min: 0.5884 max: 2.4168 USE_META, weight: 0.7407 cost: 1.1151 min: 0.5884 max: 2.4168 USE_META, weight: 0.8999 cost: 0.7917 min: 0.5884 max: 2.4168 USE_META, weight: 0.8433 cost: 0.9067 min: 0.5884 max: 2.4168 USE_META, weight: 0.8390 cost: 0.9154 min: 0.5884 max: 2.4168 USE_META, weight: 0.6775 cost: 1.2436 min: 0.5884 max: 2.4168 USE_META, weight: 0.7201 cost: 1.1571 min: 0.5884 max: 2.4168 USE_META, weight: 0.7026 cost: 1.1926 min: 0.5884 max: 2.4168 USE_META, weight: 0.7270 cost: 1.1429 min: 0.5884 max: 2.4168 USE_META, weight: 0.7092 cost: 1.1792 min: 0.5884 max: 2.4168 USE_META, weight: 0.6649 cost: 1.2691 min: 0.5884 max: 2.4168 USE_META, weight: 0.6610 cost: 1.2771 min: 0.5884 max: 2.4168 USE_META, weight: 0.6584 cost: 1.2823 min: 0.5884 max: 2.4168 USE_META, weight: 0.6604 cost: 1.2782 min: 0.5884 max: 2.4168 USE_META, weight: 0.6565 cost: 1.2861 min: 0.5884 max: 2.4168 USE_META, weight: 0.6609 cost: 1.2773 min: 0.5884 max: 2.4168 USE_META, weight: 0.6609 cost: 1.2773 min: 0.5884 max: 2.4168 USE_META, weight: 0.6547 cost: 1.2898 min: 0.5884 max: 2.4168 USE_META, weight: 0.7746 cost: 1.0462 min: 0.5884 max: 2.4168 USE_META, weight: 0.8319 cost: 0.9300 min: 0.5884 max: 2.4168 USE_META, weight: 0.8878 cost: 0.8163 min: 0.5884 max: 2.4168 USE_META, weight: 0.7518 cost: 1.0926 min: 0.5884 max: 2.4168 USE_META, weight: 0.8099 cost: 0.9746 min: 0.5884 max: 2.4168 USE_META, weight: 0.9178 cost: 0.7553 min: 0.5884 max: 2.4168 USE_META, weight: 0.8894 cost: 0.8131 min: 0.5884 max: 2.4168 USE_META, weight: 0.6897 cost: 1.2188 min: 0.5884 max: 2.4168 USE_META, weight: 0.5409 cost: 1.5210 min: 0.5884 max: 2.4168 USE_META, weight: 0.8789 cost: 0.8344 min: 0.5884 max: 2.4168 USE_META, weight: 0.8880 cost: 0.8160 min: 0.5884 max: 2.4168 USE_META, weight: 0.8774 cost: 0.8375 min: 0.5884 max: 2.4168 USE_META, weight: 0.7470 cost: 1.1024 min: 0.5884 max: 2.4168 USE_META, weight: 0.5309 cost: 1.5413 min: 0.5884 max: 2.4168 USE_META, weight: 0.5973 cost: 1.4066 min: 0.5884 max: 2.4168 USE_META, weight: 0.9104 cost: 0.7703 min: 0.5884 max: 2.4168 USE_META, weight: 0.8344 cost: 0.9247 min: 0.5884 max: 2.4168 USE_META, weight: 0.3623 cost: 1.8838 min: 0.5884 max: 2.4168 USE_META, weight: 0.1397 cost: 2.3362 min: 0.5884 max: 2.4168 USE_META, weight: 0.3758 cost: 1.8565 min: 0.5884 max: 2.4168 USE_META, weight: 0.6614 cost: 1.2762 min: 0.5884 max: 2.4168 USE_META, weight: 0.6603 cost: 1.2786 min: 0.5884 max: 2.4168 USE_META, weight: 0.6622 cost: 1.2746 min: 0.5884 max: 2.4168 USE_META, weight: 0.6620 cost: 1.2751 min: 0.5884 max: 2.4168 USE_META, weight: 0.6617 cost: 1.2756 min: 0.5884 max: 2.4168 USE_META, weight: 0.8368 cost: 0.9200 min: 0.5884 max: 2.4168 USE_META, weight: 0.6643 cost: 1.2704 min: 0.5884 max: 2.4168 USE_META, weight: 0.6633 cost: 1.2724 min: 0.5884 max: 2.4168 USE_META, weight: 0.6622 cost: 1.2746 min: 0.5884 max: 2.4168 USE_META, weight: 0.9870 cost: 0.6148 min: 0.5884 max: 2.4168 USE_META, weight: 0.9857 cost: 0.6174 min: 0.5884 max: 2.4168 USE_META, weight: 0.9735 cost: 0.6422 min: 0.5884 max: 2.4168 USE_META, weight: 1.0000 cost: 0.5884 min: 0.5884 max: 2.4168 USE_META, weight: 0.9531 cost: 0.6836 min: 0.5884 max: 2.4168 USE_META, weight: 0.8683 cost: 0.8559 min: 0.5884 max: 2.4168 USE_META, weight: 0.7618 cost: 1.0722 min: 0.5884 max: 2.4168 USE_META, weight: 0.6643 cost: 1.2703 min: 0.5884 max: 2.4168 USE_META, weight: 0.6610 cost: 1.2771 min: 0.5884 max: 2.4168 USE_META, weight: 0.6608 cost: 1.2775 min: 0.5884 max: 2.4168 USE_META, weight: 0.6610 cost: 1.2771 min: 0.5884 max: 2.4168 USE_META, weight: 0.6577 cost: 1.2838 min: 0.5884 max: 2.4168 USE_META, weight: 0.8560 cost: 0.8809 min: 0.5884 max: 2.4168 USE_META, weight: 0.7245 cost: 1.1481 min: 0.5884 max: 2.4168 USE_META, weight: 0.6795 cost: 1.2394 min: 0.5884 max: 2.4168 USE_META, weight: 0.5417 cost: 1.5194 min: 0.5884 max: 2.4168 USE_META, weight: 0.5580 cost: 1.4863 min: 0.5884 max: 2.4168 USE_META, weight: 0.2975 cost: 2.0156 min: 0.5884 max: 2.4168 USE_META, weight: 0.2706 cost: 2.0702 min: 0.5884 max: 2.4168 USE_META, weight: 0.4172 cost: 1.7723 min: 0.5884 max: 2.4168 USE_META, weight: 0.2771 cost: 2.0571 min: 0.5884 max: 2.4168 USE_META, weight: 0.1000 cost: 2.4168 min: 0.5884 max: 2.4168 USE_META, weight: 0.7907 cost: 1.0135 min: 0.5884 max: 2.4168 USE_META, weight: 0.7669 cost: 1.0620 min: 0.5884 max: 2.4168 USE_META, weight: 0.6449 cost: 1.3099 min: 0.5884 max: 2.4168 USE_META, weight: 0.8358 cost: 0.9219 min: 0.5884 max: 2.4168 USE_META, weight: 0.6254 cost: 1.3494 min: 0.5884 max: 2.4168 USE_META, weight: 0.7640 cost: 1.0678 min: 0.5884 max: 2.4168 USE_META, weight: 0.5079 cost: 1.5882 min: 0.5884 max: 2.4168 USE_META, weight: 0.7418 cost: 1.1130 min: 0.5884 max: 2.4168 USE_META, weight: 0.8436 cost: 0.9060 min: 0.5884 max: 2.4168 USE_META, weight: 0.6649 cost: 1.2691 min: 0.5884 max: 2.4168 USE_META, weight: 0.4100 cost: 1.7871 min: 0.5884 max: 2.4168 USE_META, weight: 0.4823 cost: 1.6401 min: 0.5884 max: 2.4168 USE_META, weight: 0.7120 cost: 1.1735 min: 0.5884 max: 2.4168 USE_META, weight: 0.5943 cost: 1.4125 min: 0.5884 max: 2.4168 USE_META, weight: 0.6671 cost: 1.2647 min: 0.5884 max: 2.4168 USE_META, weight: 0.6064 cost: 1.3880 min: 0.5884 max: 2.4168 USE_META, weight: 0.7511 cost: 1.0941 min: 0.5884 max: 2.4168 USE_META, weight: 0.8068 cost: 0.9809 min: 0.5884 max: 2.4168 USE_EVALUE, weight: 0.7318 eval: 12.1680 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7318 eval: 12.1680 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7318 eval: 12.1680 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.8281 eval: 7.8363 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.8281 eval: 7.8363 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.8281 eval: 7.8363 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.6827 eval: 14.3760 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.6827 eval: 14.3760 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.6827 eval: 14.3760 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7881 eval: 9.6340 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7881 eval: 9.6340 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7881 eval: 9.6340 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.1000 eval: 40.6000 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.1000 eval: 40.6000 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.1000 eval: 40.6000 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7491 eval: 11.3880 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7491 eval: 11.3880 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7491 eval: 11.3880 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.8142 eval: 8.4587 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.8142 eval: 8.4587 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.8142 eval: 8.4587 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.6738 eval: 14.7790 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.6738 eval: 14.7790 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.6738 eval: 14.7790 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.8043 eval: 8.9078 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.8043 eval: 8.9078 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.8043 eval: 8.9078 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7105 eval: 13.1290 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7105 eval: 13.1290 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7476 eval: 11.4580 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7476 eval: 11.4580 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7476 eval: 11.4580 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 1.0000 eval: 0.0991 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 1.0000 eval: 0.0991 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 1.0000 eval: 0.0991 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7425 eval: 11.6860 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7425 eval: 11.6860 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.7425 eval: 11.6860 min: 0.0991 max: 40.6000 USE_EVALUE, weight: 0.8818 eval: 5.4200 min: 0.0991 max: 40.6000 Number of contacts in models: 254 Number of contacts in alignments: 39 NUMB_ALIGNS: 39 Adding 7251 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -269.4461, CN propb: -269.4461 weights: 0.2369 constraints: 730 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 730 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 730 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 6521 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 6521 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 7251 # command: