# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0355/ # command:# Making conformation for sequence T0355 numbered 1 through 288 Created new target T0355 from T0355.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0355/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0355//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0355/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0355//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0355/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0355/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0355/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2c3zA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2c3zA expands to /projects/compbio/data/pdb/2c3z.pdb.gz 2c3zA:# T0355 read from 2c3zA/merged-good-all-a2m # 2c3zA read from 2c3zA/merged-good-all-a2m # adding 2c3zA to template set # found chain 2c3zA in template set T0355 49 :CMRDAERLIEGGMHGLIVENHGDVPFSKPDDIGP 2c3zA 33 :LNERILEFNKRNITAIIAEYKRKSPSGLDVERDP # choosing archetypes in rotamer library T0355 85 :SAFMSVVTDRIVRTAGVPV 2c3zA 67 :IEYSKFMERYAVGLSILTE T0355 104 :GINVLANAPIPAFAIA 2c3zA 95 :TLRKIASSVSIPILMK T0355 125 :KFIRVNQWANA 2c3zA 111 :DFIVKESQIDD T0355 137 :VANEGFMEGRAAEAMRYR 2c3zA 122 :AYNLGADTVLLIVKILTE T0355 155 :SLLRAEHIKVFADSH 2c3zA 147 :EYARSYGMEPLIEIN T0355 173 :GAHAIT 2c3zA 162 :DENDLD T0355 182 :SIDEL 2c3zA 168 :IALRI T0355 189 :DLAFFDADG 2c3zA 173 :GARFIGINS T0355 202 :GQRTGNSASLEEIEEIGAATH 2c3zA 182 :RDLETLEINKENQRKLISMIP T0355 223 :LPLLVGSGV 2c3zA 205 :VVKVAESGI T0355 232 :NEGNIVEILKR 2c3zA 215 :ERNEIEELRKL T0355 243 :TSGVIVASSLKEGGVWWNP 2c3zA 227 :VNAFLIGSSLMRNPEKIKE Number of specific fragments extracted= 13 number of extra gaps= 0 total=13 Number of alignments=1 # 2c3zA read from 2c3zA/merged-good-all-a2m # found chain 2c3zA in template set T0355 8 :AANAIQEIFGRSKALIGMIHCPAFPGAPR 2c3zA 33 :LNERILEFNKRNITAIIAEYKRKSPSGLD T0355 38 :RNASMD 2c3zA 62 :VERDPI T0355 51 :RDAERLIEG 2c3zA 68 :EYSKFMERY T0355 61 :MHGLIV 2c3zA 77 :AVGLSI T0355 74 :FSKPDDI 2c3zA 83 :LTEEKYF T0355 97 :RTA 2c3zA 90 :NGS T0355 102 :PVGINVLANAPIPAFAI 2c3zA 93 :YETLRKIASSVSIPILM T0355 123 :GAKFIR 2c3zA 110 :KDFIVK T0355 130 :NQWANA 2c3zA 116 :ESQIDD T0355 137 :VANEGFMEGRA 2c3zA 122 :AYNLGADTVLL T0355 148 :AEAM 2c3zA 135 :KILT T0355 152 :RYRSLLRAEHIKVFADSHVKHG 2c3zA 140 :RELESLLEYARSYGMEPLIEIN T0355 179 :ADRSIDELTR 2c3zA 162 :DENDLDIALR T0355 193 :FDADGVIATG 2c3zA 172 :IGARFIGINS T0355 203 :QRTGNSASLEEIEEIGAAT 2c3zA 183 :DLETLEINKENQRKLISMI T0355 222 :HLPLLVGSGV 2c3zA 204 :NVVKVAESGI T0355 232 :NEGNIVEILKR 2c3zA 215 :ERNEIEELRKL T0355 243 :TSGVIVASSLKEGGVWWNP 2c3zA 227 :VNAFLIGSSLMRNPEKIKE Number of specific fragments extracted= 18 number of extra gaps= 0 total=31 Number of alignments=2 # 2c3zA read from 2c3zA/merged-good-all-a2m # found chain 2c3zA in template set T0355 8 :AANAIQEIFGRSKALIGMIHCPAFPGAPRYRN 2c3zA 33 :LNERILEFNKRNITAIIAEYKRKSPSGLDVER T0355 41 :S 2c3zA 65 :D T0355 49 :CMRDAERLIEG 2c3zA 66 :PIEYSKFMERY T0355 61 :MHGLIVENH 2c3zA 77 :AVGLSILTE T0355 79 :DIGPETSA 2c3zA 90 :NGSYETLR T0355 94 :RIVRTAGVPVGINVLANAPI 2c3zA 98 :KIASSVSIPILMKDFIVKES T0355 115 :AFAIAKAGGAKFIRVNQ 2c3zA 118 :QIDDAYNLGADTVLLIV T0355 140 :EGFMEGRAAEAMRYRSLLRAEH 2c3zA 135 :KILTERELESLLEYARSYGMEP T0355 165 :FADSHV 2c3zA 157 :LIEIND T0355 184 :DELTRDLAFFDADGVIATG 2c3zA 163 :ENDLDIALRIGARFIGINS T0355 203 :QRTGNSASLEEIEEIGA 2c3zA 183 :DLETLEINKENQRKLIS T0355 220 :ATHLPLLVGSGV 2c3zA 202 :PSNVVKVAESGI T0355 232 :NEGNIVEILKR 2c3zA 215 :ERNEIEELRKL T0355 243 :TSGVIVASSL 2c3zA 227 :VNAFLIGSSL Number of specific fragments extracted= 14 number of extra gaps= 0 total=45 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1h5yA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1h5yA expands to /projects/compbio/data/pdb/1h5y.pdb.gz 1h5yA:Skipped atom 208, because occupancy 0.5 <= existing 0.500 in 1h5yA Skipped atom 210, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 212, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 214, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 216, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 218, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 871, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 873, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 875, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 877, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 879, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 881, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 1633, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 1635, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 1637, because occupancy 0.500 <= existing 0.500 in 1h5yA Skipped atom 1639, because occupancy 0.500 <= existing 0.500 in 1h5yA # T0355 read from 1h5yA/merged-good-all-a2m # 1h5yA read from 1h5yA/merged-good-all-a2m # adding 1h5yA to template set # found chain 1h5yA in template set T0355 49 :CMRDAERLIEGGMH 1h5yA 35 :PVEMAVRYEEEGAD T0355 63 :GLIVE 1h5yA 50 :IAILD T0355 74 :FSKPDDIGPETSAFMSVVTDR 1h5yA 55 :ITAAPEGRATFIDSVKRVAEA T0355 112 :PIPA 1h5yA 76 :VSIP T0355 118 :IAKAGGAK 1h5yA 80 :VLVGGGVR T0355 128 :RVNQWA 1h5yA 88 :SLEDAT T0355 136 :YVANEGFMEGRA 1h5yA 94 :TLFRAGADKVSV T0355 149 :EAMRYR 1h5yA 106 :NTAAVR T0355 155 :SLL 1h5yA 114 :QLV T0355 158 :RAEHIK 1h5yA 121 :REFGSQ T0355 164 :VFADSHVKHG 1h5yA 128 :TVVAIDAKWN T0355 174 :AHAIT 1h5yA 157 :VKWAK T0355 182 :SIDEL 1h5yA 162 :EVEEL T0355 194 :DADGVIATGQ 1h5yA 167 :GAGEILLTSI T0355 204 :RTGNSASLEEIEEIGAATHLPLLVGSGV 1h5yA 180 :GTGLGYDVELIRRVADSVRIPVIASGGA T0355 232 :NEGNIVEILKR 1h5yA 209 :RVEHFYEAAAA T0355 243 :TSGVIVASSLKE 1h5yA 221 :ADAVLAASLFHF T0355 257 :VWWN 1h5yA 233 :RVLS T0355 267 :VRSFVAAARP 1h5yA 237 :IAQVKRYLKE Number of specific fragments extracted= 19 number of extra gaps= 0 total=64 Number of alignments=4 # 1h5yA read from 1h5yA/merged-good-all-a2m # found chain 1h5yA in template set T0355 18 :RSKALIGMIHCPAFPG 1h5yA 3 :MALRIIPCLDIDGGAK T0355 34 :APRY 1h5yA 21 :VKGV T0355 41 :SMDAIYD 1h5yA 25 :NFQGIRE T0355 48 :ACMRDAERLIEGGMHGLIV 1h5yA 34 :DPVEMAVRYEEEGADEIAI T0355 70 :GDVPFSKP 1h5yA 53 :LDITAAPE T0355 80 :IGPETS 1h5yA 61 :GRATFI T0355 103 :VGINVLANAPIPAFAIAKAGGAK 1h5yA 67 :DSVKRVAEAVSIPVLVGGGVRSL T0355 131 :QWANA 1h5yA 90 :EDATT T0355 137 :VANEGFMEGRAAEAM 1h5yA 95 :LFRAGADKVSVNTAA T0355 152 :RYRSLLRAEHIKVFADS 1h5yA 111 :RNPQLVALLAREFGSQS T0355 169 :HVKHGAHAIT 1h5yA 129 :VVAIDAKWNG T0355 179 :ADRSIDELTR 1h5yA 156 :AVKWAKEVEE T0355 193 :FDADGVIAT 1h5yA 166 :LGAGEILLT T0355 202 :GQRTGN 1h5yA 180 :GTGLGY T0355 210 :SLEEIEEIGAATHLPLLVGSGV 1h5yA 186 :DVELIRRVADSVRIPVIASGGA T0355 232 :NEGNIVEILKR 1h5yA 209 :RVEHFYEAAAA T0355 243 :TSGVIVASSLKEGGVWW 1h5yA 221 :ADAVLAASLFHFRVLSI T0355 261 :PVELARVRS 1h5yA 238 :AQVKRYLKE Number of specific fragments extracted= 18 number of extra gaps= 0 total=82 Number of alignments=5 # 1h5yA read from 1h5yA/merged-good-all-a2m # found chain 1h5yA in template set T0355 21 :ALIGMIHCPA 1h5yA 6 :RIIPCLDIDG T0355 34 :APRYRNASM 1h5yA 21 :VKGVNFQGI T0355 49 :CMRDAERLIEGGMHGLIVENHGD 1h5yA 35 :PVEMAVRYEEEGADEIAILDITA T0355 81 :GPETSAFMSVVTDRIVRTAGVPVGINVLANAPIPAFAIAK 1h5yA 58 :APEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFR T0355 122 :GGAKFIRVNQWAN 1h5yA 98 :AGADKVSVNTAAV T0355 137 :V 1h5yA 111 :R T0355 143 :MEGR 1h5yA 112 :NPQL T0355 150 :AMRYRSLLRAEHIKVFADSHVKHGAH 1h5yA 116 :VALLAREFGSQSTVVAIDAKWNGEYY T0355 178 :TADRSIDELTRDLAFFDADGVIATGQ 1h5yA 151 :ATGLDAVKWAKEVEELGAGEILLTSI T0355 204 :RTGNSASLEEIEEIGAATHLPLLVGSGV 1h5yA 180 :GTGLGYDVELIRRVADSVRIPVIASGGA T0355 232 :NEGNIVEILKR 1h5yA 209 :RVEHFYEAAAA T0355 243 :TSGVIVASSLKEGGVW 1h5yA 221 :ADAVLAASLFHFRVLS T0355 267 :VRSFVAAARP 1h5yA 237 :IAQVKRYLKE Number of specific fragments extracted= 13 number of extra gaps= 0 total=95 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1mzhA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1mzhA expands to /projects/compbio/data/pdb/1mzh.pdb.gz 1mzhA:# T0355 read from 1mzhA/merged-good-all-a2m # 1mzhA read from 1mzhA/merged-good-all-a2m # adding 1mzhA to template set # found chain 1mzhA in template set T0355 21 :ALIGMIHCPAFPG 1mzhA 106 :KYIDNAALKPHLS T0355 46 :YDACMRDAERLIEGGMHGLIV 1mzhA 119 :EKEIEEFVLKSEELGIYAVCV T0355 76 :KPD 1mzhA 140 :NPY T0355 104 :GINVLAN 1mzhA 143 :HVKLASS T0355 111 :APIPAFAIAKAGGAK 1mzhA 152 :KKVKVCCVIGFPLGL T0355 127 :IRVNQWAN 1mzhA 167 :NKTSVKVK T0355 136 :YVANE 1mzhA 175 :EAVEA T0355 141 :GFMEGRAA 1mzhA 183 :GAQELDIV T0355 155 :SLLRA 1mzhA 206 :EELKE T0355 160 :EHIKVFADSH 1mzhA 216 :PSAVHKVIVE T0355 170 :VKHGAHAIT 1mzhA 227 :PYLNEEEIK T0355 182 :SIDELTR 1mzhA 236 :KAVEICI T0355 189 :DLAF 1mzhA 245 :GADF T0355 198 :VIATGQRTGNSASLEEIEEIGAATH 1mzhA 249 :IKTSTGFAPRGTTLEEVRLIKSSAK T0355 223 :LPLLVGSGV 1mzhA 276 :IKVKASGGI T0355 232 :NEGNIVEILKR 1mzhA 286 :DLETAISMIEA T0355 243 :TSGVIVASSL 1mzhA 298 :ADRIGTSSGI T0355 269 :SFVAAARPGLEALEHHH 1mzhA 308 :SIAEEFLKRHLILEHHH Number of specific fragments extracted= 18 number of extra gaps= 0 total=113 Number of alignments=7 # 1mzhA read from 1mzhA/merged-good-all-a2m # found chain 1mzhA in template set Warning: unaligning (T0355)H286 because last residue in template chain is (1mzhA)H325 T0355 20 :KALIGMIHCPAFPG 1mzhA 105 :RKYIDNAALKPHLS T0355 46 :YDACMRDAERLIEGGMHGLIV 1mzhA 119 :EKEIEEFVLKSEELGIYAVCV T0355 76 :KPDDI 1mzhA 140 :NPYHV T0355 103 :VGINVLANAPIPAFAIAKAGGA 1mzhA 145 :KLASSIAKKVKVCCVIGFPLGL T0355 127 :IRVNQWANA 1mzhA 167 :NKTSVKVKE T0355 137 :VANE 1mzhA 176 :AVEA T0355 141 :GFMEGRAAEAMRYR 1mzhA 183 :GAQELDIVWNLSAF T0355 155 :SLLRAEHIKVFADS 1mzhA 202 :DFVVEELKEIFRET T0355 169 :HVKHGAHAITADRSIDELTRDLAFFDADGVIATGQRTGNSASLEEIEEIGAAT 1mzhA 220 :HKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIKSSA T0355 222 :HLPLLVGSGV 1mzhA 275 :RIKVKASGGI T0355 232 :NEGNIVEILKR 1mzhA 286 :DLETAISMIEA T0355 243 :TSGVIVASSL 1mzhA 298 :ADRIGTSSGI T0355 269 :SFVAAARPGLEALEHHH 1mzhA 308 :SIAEEFLKRHLILEHHH Number of specific fragments extracted= 13 number of extra gaps= 0 total=126 Number of alignments=8 # 1mzhA read from 1mzhA/merged-good-all-a2m # found chain 1mzhA in template set Warning: unaligning (T0355)H286 because last residue in template chain is (1mzhA)H325 T0355 23 :IGMIHCP 1mzhA 108 :IDNAALK T0355 38 :RNASMDAIYDACM 1mzhA 115 :PHLSEKEIEEFVL T0355 55 :RLIEGGMHGLIVENHG 1mzhA 128 :KSEELGIYAVCVNPYH T0355 92 :TDRIVRTA 1mzhA 144 :VKLASSIA T0355 100 :GVPVGINVLAN 1mzhA 153 :KVKVCCVIGFP T0355 111 :APIPAFA 1mzhA 172 :KVKEAVE T0355 119 :AKAGGAKFI 1mzhA 179 :AVRDGAQEL T0355 130 :NQWANAYVANEGFMEGRAAEAMRYRSLLR 1mzhA 188 :DIVWNLSAFKSEKYDFVVEELKEIFRETP T0355 161 :HIKVFADSHVKHG 1mzhA 217 :SAVHKVIVETPYL T0355 179 :ADRSIDELTRDLAFFDADGVIATGQRTGNSASLEEIEEIGA 1mzhA 230 :NEEEIKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIKS T0355 220 :ATHLPLLVGSGV 1mzhA 273 :KGRIKVKASGGI T0355 232 :NEGNIVEILKR 1mzhA 286 :DLETAISMIEA T0355 243 :TSGVIVAS 1mzhA 298 :ADRIGTSS T0355 267 :VRSFVAAARPGLEALEHHH 1mzhA 306 :GISIAEEFLKRHLILEHHH Number of specific fragments extracted= 14 number of extra gaps= 0 total=140 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kfcA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kfcA expands to /projects/compbio/data/pdb/1kfc.pdb.gz 1kfcA:# T0355 read from 1kfcA/merged-good-all-a2m # 1kfcA read from 1kfcA/merged-good-all-a2m # adding 1kfcA to template set # found chain 1kfcA in template set Warning: unaligning (T0355)D196 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kfcA)L193 Warning: unaligning (T0355)L211 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kfcA)L193 T0355 12 :IQEIFGR 1kfcA 7 :LFAQLND T0355 28 :CPAFPGAPRYRNASMD 1kfcA 14 :RREGAFVPFVTLGDPG T0355 46 :YDACMRDAERLIEGGMHGLIVE 1kfcA 30 :IEQSLKIIDTLIDAGADALELG T0355 72 :VPFSKPDDIGPETSAFMSVVTDRIVRTAGVPVGINVLAN 1kfcA 52 :VPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIRE T0355 111 :APIPAFAIAKAGGAKF 1kfcA 92 :HPTIPIGLLMYANLVF T0355 127 :IRVNQWAN 1kfcA 109 :NGIDAFYA T0355 136 :YVANEGFMEGRAAEAM 1kfcA 117 :RCEQVGVDSVLVADVP T0355 152 :RYRSLLRAEHIKVFADSHVKHGAHAIT 1kfcA 138 :PFRQAALRHNIAPIFICPPNADDDLLR T0355 182 :SIDELTRDLAF 1kfcA 165 :QVASYGRGYTY T0355 194 :DA 1kfcA 176 :LL T0355 212 :E 1kfcA 194 :H T0355 213 :EIEEIGAATHLPLLVGSGV 1kfcA 196 :LIEKLKEYHAAPALQGFGI T0355 232 :NEGNIVEILKR 1kfcA 216 :SPEQVSAAVRA T0355 243 :TSGVIVASSLKEGGVWW 1kfcA 228 :AAGAISGSAIVKIIEKN T0355 260 :NPVELARVRSFVAAARPG 1kfcA 248 :PKQMLAELRSFVSAMKAA Number of specific fragments extracted= 15 number of extra gaps= 0 total=155 Number of alignments=10 # 1kfcA read from 1kfcA/merged-good-all-a2m # found chain 1kfcA in template set Warning: unaligning (T0355)A9 because first residue in template chain is (1kfcA)M1 Warning: unaligning (T0355)D196 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1kfcA)L193 Warning: unaligning (T0355)L211 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kfcA)L193 T0355 10 :NAIQEIFG 1kfcA 2 :ERYENLFA T0355 18 :RSKALIGMIHCPAFP 1kfcA 15 :REGAFVPFVTLGDPG T0355 46 :YDACMRDAERLIEGGMHGLIVE 1kfcA 30 :IEQSLKIIDTLIDAGADALELG T0355 72 :VPFSKPDDIGPETSAFMSVVTDRIVRTAGVPVGINVLAN 1kfcA 52 :VPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIRE T0355 111 :APIPAFAIAKAGGAKF 1kfcA 92 :HPTIPIGLLMYANLVF T0355 127 :IRVNQWANA 1kfcA 109 :NGIDAFYAR T0355 137 :VANEGFMEGRAAEAM 1kfcA 118 :CEQVGVDSVLVADVP T0355 152 :RYRSLLRAEHIKVFADSHVKHGA 1kfcA 134 :EESAPFRQAALRHNIAPIFICPP T0355 177 :ITADRSIDELTRDLAFFDA 1kfcA 157 :NADDDLLRQVASYGRGYTY T0355 212 :EEIEEIGAATHLPLLVGSGV 1kfcA 195 :HLIEKLKEYHAAPALQGFGI T0355 232 :NEGNIVEILKR 1kfcA 216 :SPEQVSAAVRA T0355 243 :TSGVIVASSLKE 1kfcA 228 :AAGAISGSAIVK T0355 255 :GGVW 1kfcA 244 :NLAS T0355 260 :NPVELARVRSFVAAARPG 1kfcA 248 :PKQMLAELRSFVSAMKAA Number of specific fragments extracted= 14 number of extra gaps= 0 total=169 Number of alignments=11 # 1kfcA read from 1kfcA/merged-good-all-a2m # found chain 1kfcA in template set Warning: unaligning (T0355)S210 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1kfcA)L193 T0355 7 :NAANAIQEIFGRSKALIGMIHCPAFP 1kfcA 3 :RYENLFAQLNDRREGAFVPFVTLGDP T0355 39 :N 1kfcA 29 :G T0355 46 :YDACMRDAERLIEGGMHGLIVENH 1kfcA 30 :IEQSLKIIDTLIDAGADALELGVP T0355 74 :FSKPDDIGPETSAFMS 1kfcA 54 :FSDPLADGPTIQNANL T0355 90 :VVTDRIVRTA 1kfcA 83 :EMLAIIREKH T0355 100 :GVPVGINVLANAPI 1kfcA 94 :TIPIGLLMYANLVF T0355 114 :PAFAIAKAGGAKFIRV 1kfcA 113 :AFYARCEQVGVDSVLV T0355 140 :EGFMEGRAAEAMRYRSLLRAEHIKVF 1kfcA 129 :ADVPVEESAPFRQAALRHNIAPIFIC T0355 178 :TADRSIDELTRDLAFFDADGVIA 1kfcA 155 :PPNADDDLLRQVASYGRGYTYLL T0355 211 :LEEIEEIGAATHLPLLVGSGV 1kfcA 194 :HHLIEKLKEYHAAPALQGFGI T0355 232 :NEGNIVEILKR 1kfcA 216 :SPEQVSAAVRA T0355 243 :TSGVIVASSL 1kfcA 228 :AAGAISGSAI T0355 263 :ELA 1kfcA 247 :SPK T0355 269 :SFVAAARPGLEALE 1kfcA 250 :QMLAELRSFVSAMK Number of specific fragments extracted= 14 number of extra gaps= 0 total=183 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1m5wA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1m5wA expands to /projects/compbio/data/pdb/1m5w.pdb.gz 1m5wA:# T0355 read from 1m5wA/merged-good-all-a2m # 1m5wA read from 1m5wA/merged-good-all-a2m # adding 1m5wA to template set # found chain 1m5wA in template set T0355 13 :QEIFGRSKA 1m5wA 15 :TLRNARGTA T0355 41 :SMD 1m5wA 24 :YPD T0355 49 :CMRDAERLIEGGMHGLIVENHGDVPFS 1m5wA 27 :PVQAAFIAEQAGADGITVHLREDRRHI T0355 102 :PV 1m5wA 54 :TD T0355 104 :GINVLANAPIPAFAIAKAGG 1m5wA 57 :DVRILRQTLDTRMNLEMAVT T0355 130 :NQWAN 1m5wA 77 :EEMLA T0355 136 :YVANEGFMEGRAAEAMRYR 1m5wA 82 :IAVETKPHFCCLVPEKRQE T0355 155 :SLLRAEHIKVFADSH 1m5wA 121 :KRLADAGIQVSLFID T0355 172 :HGAHAIT 1m5wA 136 :ADEEQIK T0355 182 :SIDEL 1m5wA 143 :AAAEV T0355 189 :DLAFF 1m5wA 148 :GAPFI T0355 198 :VIATG 1m5wA 153 :EIHTG T0355 203 :QRTGNSASLE 1m5wA 160 :ADAKTDAEQA T0355 213 :EIEEIGAA 1m5wA 171 :ELARIAKA T0355 221 :THLPLLVGSGVNEGNIVEILKR 1m5wA 185 :LGLKVNAGHGLTYHNVKAIAAI T0355 243 :TSGVIVASSLKEGGVWWN 1m5wA 209 :MHELNIGHAIIGRAVMTG T0355 263 :ELARVRSFVAAARPGL 1m5wA 227 :LKDAVAEMKRLMLEAR Number of specific fragments extracted= 17 number of extra gaps= 0 total=200 Number of alignments=13 # 1m5wA read from 1m5wA/merged-good-all-a2m # found chain 1m5wA in template set T0355 48 :ACMRDAERLIEGGMHGLIVENHGDVPFSK 1m5wA 26 :DPVQAAFIAEQAGADGITVHLREDRRHIT T0355 82 :P 1m5wA 55 :D T0355 103 :VGINVLANAPIPAFAIAKAGG 1m5wA 56 :RDVRILRQTLDTRMNLEMAVT T0355 130 :NQWANA 1m5wA 77 :EEMLAI T0355 137 :VANEGFMEGRAAEA 1m5wA 83 :AVETKPHFCCLVPE T0355 151 :M 1m5wA 109 :V T0355 152 :RYRSLLRAEHI 1m5wA 111 :GQRDKMRDACK T0355 163 :KVFADSHVKH 1m5wA 125 :DAGIQVSLFI T0355 177 :ITADRSIDELTR 1m5wA 135 :DADEEQIKAAAE T0355 193 :FDADGVIAT 1m5wA 147 :VGAPFIEIH T0355 202 :G 1m5wA 157 :G T0355 203 :QRTG 1m5wA 162 :AKTD T0355 209 :A 1m5wA 166 :A T0355 210 :SLEEIEEIGAAT 1m5wA 171 :ELARIAKAATFA T0355 222 :HLPLLVGSGVNEGNIVEILKR 1m5wA 186 :GLKVNAGHGLTYHNVKAIAAI T0355 243 :TSGVIVASSLKE 1m5wA 209 :MHELNIGHAIIG T0355 260 :NPVELARVRSFVAAARPGL 1m5wA 224 :MTGLKDAVAEMKRLMLEAR Number of specific fragments extracted= 17 number of extra gaps= 0 total=217 Number of alignments=14 # 1m5wA read from 1m5wA/merged-good-all-a2m # found chain 1m5wA in template set Warning: unaligning (T0355)S19 because first residue in template chain is (1m5wA)A2 T0355 20 :KALIGMI 1m5wA 3 :ELLLGVN T0355 33 :GAPRYRN 1m5wA 20 :RGTAYPD T0355 49 :CMRDAERLIEGGMHGLIVENHGDVPFSKP 1m5wA 27 :PVQAAFIAEQAGADGITVHLREDRRHITD T0355 90 :VVTDRIVRTAGVPVGINVLA 1m5wA 56 :RDVRILRQTLDTRMNLEMAV T0355 112 :PIPAFAIAKAGGAKFIRV 1m5wA 76 :TEEMLAIAVETKPHFCCL T0355 133 :ANA 1m5wA 103 :TEG T0355 137 :VANEGFMEGRAAEAMRYRSLLRA 1m5wA 106 :GLDVAGQRDKMRDACKRLADAGI T0355 161 :HIKVFADSH 1m5wA 129 :QVSLFIDAD T0355 184 :DELTRDLAFFDADGVIAT 1m5wA 138 :EEQIKAAAEVGAPFIEIH T0355 202 :GQRTGNSA 1m5wA 157 :GCYADAKT T0355 211 :LEEIEEIGA 1m5wA 172 :LARIAKAAT T0355 220 :ATHLPLLVGSGVNEGNIVEILK 1m5wA 184 :SLGLKVNAGHGLTYHNVKAIAA T0355 242 :RTSGVIVASSL 1m5wA 208 :EMHELNIGHAI T0355 264 :LARVRSFVAAARPGL 1m5wA 228 :KDAVAEMKRLMLEAR Number of specific fragments extracted= 14 number of extra gaps= 0 total=231 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1nsj/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1nsj expands to /projects/compbio/data/pdb/1nsj.pdb.gz 1nsj:Warning: there is no chain 1nsj will retry with 1nsjA # T0355 read from 1nsj/merged-good-all-a2m # 1nsj read from 1nsj/merged-good-all-a2m # adding 1nsj to template set # found chain 1nsj in template set Warning: unaligning (T0355)N207 because of BadResidue code BAD_PEPTIDE in next template residue (1nsj)T138 Warning: unaligning (T0355)S208 because of BadResidue code BAD_PEPTIDE at template residue (1nsj)T138 Warning: unaligning (T0355)A209 because of BadResidue code BAD_PEPTIDE at template residue (1nsj)F139 T0355 35 :PRYRNASMD 1nsj 3 :RVKICGITN T0355 50 :MRDAERLIEGGMHGLIVENHGD 1nsj 12 :LEDALFSVESGADAVGFVFYPK T0355 75 :SKPDDIGPETSAFMSV 1nsj 34 :SKRYISPEDARRISVE T0355 111 :APIPAFAIAK 1nsj 51 :PPFVFRVGVF T0355 122 :GGA 1nsj 61 :VNE T0355 128 :RVNQWAN 1nsj 64 :EPEKILD T0355 136 :YVANEGFMEGRAAEAMR 1nsj 71 :VASYVQLNAVQLHGEEP T0355 154 :RSLLRA 1nsj 88 :IELCRK T0355 160 :EHIKVFADSHV 1nsj 96 :ERILVIKAVGV T0355 172 :HGAHAIT 1nsj 107 :SNERDME T0355 182 :SIDEL 1nsj 114 :RALNY T0355 188 :RDLAFFDA 1nsj 119 :REFPILLD T0355 197 :GVI 1nsj 127 :TKT T0355 203 :QRTG 1nsj 133 :GGSG T0355 210 :SLEEI 1nsj 140 :DWSLI T0355 219 :AATH 1nsj 146 :PYRD T0355 223 :LPLLVGSGVNEGNIVEILKR 1nsj 152 :RYLVLSGGLNPENVRSAIDV T0355 243 :TSGVIVASSLKEGGVWWN 1nsj 174 :PFAVDVSSGVEAFPGKKD T0355 264 :LARVRSFVAAAR 1nsj 192 :HDSIKMFIKNAK Number of specific fragments extracted= 19 number of extra gaps= 1 total=250 Number of alignments=16 # 1nsj read from 1nsj/merged-good-all-a2m # found chain 1nsj in template set Warning: unaligning (T0355)T205 because of BadResidue code BAD_PEPTIDE in next template residue (1nsj)T138 Warning: unaligning (T0355)S208 because of BadResidue code BAD_PEPTIDE at template residue (1nsj)T138 Warning: unaligning (T0355)A209 because of BadResidue code BAD_PEPTIDE at template residue (1nsj)F139 T0355 23 :IGMIHCPA 1nsj 4 :VKICGITN T0355 50 :MRDAERLIEGGMHGLIVENHGDV 1nsj 12 :LEDALFSVESGADAVGFVFYPKS T0355 77 :PDDIGP 1nsj 35 :KRYISP T0355 103 :VGINVLA 1nsj 41 :EDARRIS T0355 110 :NAPI 1nsj 52 :PFVF T0355 117 :AIAKAGGA 1nsj 56 :RVGVFVNE T0355 128 :RVNQWANA 1nsj 64 :EPEKILDV T0355 137 :VANEGFMEGRA 1nsj 72 :ASYVQLNAVQL T0355 148 :AEAM 1nsj 84 :GEEP T0355 152 :RYRSLLRAE 1nsj 89 :ELCRKIAER T0355 166 :ADSHVKHGA 1nsj 98 :ILVIKAVGV T0355 178 :TADRSIDELTR 1nsj 107 :SNERDMERALN T0355 192 :FFDADGVIAT 1nsj 118 :YREFPILLDT T0355 202 :GQR 1nsj 134 :GSG T0355 210 :SLEEI 1nsj 140 :DWSLI T0355 218 :GAATH 1nsj 148 :RDRFR T0355 224 :PLLVGSGVNEGNIVEILKR 1nsj 153 :YLVLSGGLNPENVRSAIDV T0355 243 :TSGVIVASSLKEGGVWWN 1nsj 174 :PFAVDVSSGVEAFPGKKD T0355 264 :LARVRSFVAAARP 1nsj 192 :HDSIKMFIKNAKG Number of specific fragments extracted= 19 number of extra gaps= 1 total=269 Number of alignments=17 # 1nsj read from 1nsj/merged-good-all-a2m # found chain 1nsj in template set Warning: unaligning (T0355)N207 because of BadResidue code BAD_PEPTIDE in next template residue (1nsj)T138 Warning: unaligning (T0355)S208 because of BadResidue code BAD_PEPTIDE at template residue (1nsj)T138 Warning: unaligning (T0355)A209 because of BadResidue code BAD_PEPTIDE at template residue (1nsj)F139 T0355 23 :IGMIHCP 1nsj 4 :VKICGIT T0355 41 :S 1nsj 11 :N T0355 50 :MRDAERLIEGGMHGLIVENHGDVPFS 1nsj 12 :LEDALFSVESGADAVGFVFYPKSKRY T0355 80 :IGPETSAFMSV 1nsj 38 :ISPEDARRISV T0355 98 :TA 1nsj 49 :EL T0355 100 :GVPVGINVLANA 1nsj 52 :PFVFRVGVFVNE T0355 112 :PIPAFAIAKAGGAKFIRVN 1nsj 65 :PEKILDVASYVQLNAVQLH T0355 140 :EGFMEGRAAEAM 1nsj 84 :GEEPIELCRKIA T0355 160 :EHIKVFADSHVK 1nsj 96 :ERILVIKAVGVS T0355 182 :SIDELTRDLAFFDADGVIAT 1nsj 108 :NERDMERALNYREFPILLDT T0355 205 :TG 1nsj 135 :SG T0355 210 :SLEEIEEIGAATHLPLLV 1nsj 140 :DWSLILPYRDRFRYLVLS T0355 229 :SGVNEGNIVEILKR 1nsj 158 :GGLNPENVRSAIDV T0355 243 :TSGVIVASSLKEGG 1nsj 174 :PFAVDVSSGVEAFP T0355 260 :NPVELARVRSFVAAAR 1nsj 188 :GKKDHDSIKMFIKNAK Number of specific fragments extracted= 15 number of extra gaps= 1 total=284 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1igs/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1igs expands to /projects/compbio/data/pdb/1igs.pdb.gz 1igs:Warning: there is no chain 1igs will retry with 1igsA # T0355 read from 1igs/merged-good-all-a2m # 1igs read from 1igs/merged-good-all-a2m # adding 1igs to template set # found chain 1igs in template set T0355 8 :AANAIQEIFGRSKA 1igs 33 :LNERILEFNKRNIT T0355 22 :LIGMIHCPAFPGAP 1igs 48 :IIAEYKRKSPSGLD T0355 38 :RNASM 1igs 62 :VERDP T0355 50 :MRDAERLIE 1igs 67 :IEYSKFMER T0355 60 :GMHGLIVE 1igs 76 :YAVGLSIL T0355 74 :FSKPDDIGP 1igs 84 :TEEKYFNGS T0355 102 :PVGINVLANAPIPAFAIA 1igs 93 :YETLRKIASSVSIPILMK T0355 125 :KFIRVNQWANA 1igs 111 :DFIVKESQIDD T0355 137 :VANEGFMEGRAAEAMRYR 1igs 122 :AYNLGADTVLLIVKILTE T0355 155 :SLLRAEHIKVFADSH 1igs 147 :EYARSYGMEPLIEIN T0355 173 :GAHAIT 1igs 162 :DENDLD T0355 182 :SIDEL 1igs 168 :IALRI T0355 189 :DLAFFDADG 1igs 173 :GARFIGINS T0355 202 :GQRTGNSASLEEIEEIGAATH 1igs 182 :RDLETLEINKENQRKLISMIP T0355 223 :LPLLVGSGV 1igs 205 :VVKVAESGI T0355 232 :NEGNIVEILKR 1igs 215 :ERNEIEELRKL T0355 243 :TSGVIVASSLKEGGVWWNP 1igs 227 :VNAFLIGSSLMRNPEKIKE T0355 270 :F 1igs 246 :F Number of specific fragments extracted= 18 number of extra gaps= 0 total=302 Number of alignments=19 # 1igs read from 1igs/merged-good-all-a2m # found chain 1igs in template set T0355 6 :DNAANAIQEIFGRSKALIGMIHCPAFPGA 1igs 31 :ISLNERILEFNKRNITAIIAEYKRKSPSG T0355 36 :RYRNAS 1igs 60 :LDVERD T0355 49 :CMRDAERLIEG 1igs 66 :PIEYSKFMERY T0355 61 :MHGLIVE 1igs 77 :AVGLSIL T0355 74 :FSKPDDIGP 1igs 84 :TEEKYFNGS T0355 102 :PVGINVLANAPIPAFAIAKAG 1igs 93 :YETLRKIASSVSIPILMKDFI T0355 127 :IR 1igs 114 :VK T0355 130 :NQWANA 1igs 116 :ESQIDD T0355 137 :VANEGFMEGRA 1igs 122 :AYNLGADTVLL T0355 148 :AEAM 1igs 134 :VKIL T0355 152 :RYRSLLRAEHIKVFADSHVKHG 1igs 140 :RELESLLEYARSYGMEPLIEIN T0355 179 :ADRSIDELTR 1igs 162 :DENDLDIALR T0355 193 :FDADGVIATG 1igs 172 :IGARFIGINS T0355 203 :QRTGNSASLEEIEEIGAAT 1igs 183 :DLETLEINKENQRKLISMI T0355 222 :HLPLLVGSGV 1igs 204 :NVVKVAESGI T0355 232 :NEGNIVEILKR 1igs 215 :ERNEIEELRKL T0355 243 :TSGVIVASSLKEGGVWW 1igs 227 :VNAFLIGSSLMRNPEKI T0355 268 :RSF 1igs 244 :KEF Number of specific fragments extracted= 18 number of extra gaps= 0 total=320 Number of alignments=20 # 1igs read from 1igs/merged-good-all-a2m # found chain 1igs in template set T0355 7 :NAANAIQEIFGRSKALIGMIHCPAFPGAPRYRN 1igs 32 :SLNERILEFNKRNITAIIAEYKRKSPSGLDVER T0355 41 :S 1igs 65 :D T0355 49 :CMRDAERLIEG 1igs 66 :PIEYSKFMERY T0355 61 :MHGLIVENHG 1igs 77 :AVGLSILTEE T0355 76 :KPDDIGPETSA 1igs 87 :KYFNGSYETLR T0355 94 :RIVRTAGVPVGINVLANA 1igs 98 :KIASSVSIPILMKDFIVK T0355 113 :IPAFAIAKAGGAKFIRVNQ 1igs 116 :ESQIDDAYNLGADTVLLIV T0355 140 :EGFMEGRAAEAMRYRSLLRAEH 1igs 135 :KILTERELESLLEYARSYGMEP T0355 165 :FADSHV 1igs 157 :LIEIND T0355 184 :DELTRDLAFFDADGVIATG 1igs 163 :ENDLDIALRIGARFIGINS T0355 203 :QRTGNSASLEEIEEIGA 1igs 183 :DLETLEINKENQRKLIS T0355 220 :ATHLPLLVGSGV 1igs 202 :PSNVVKVAESGI T0355 232 :NEGNIVEILKR 1igs 215 :ERNEIEELRKL T0355 243 :TSGVIVASSL 1igs 227 :VNAFLIGSSL T0355 263 :ELARVRSFV 1igs 239 :NPEKIKEFI Number of specific fragments extracted= 15 number of extra gaps= 0 total=335 Number of alignments=21 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2f6uA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2f6uA expands to /projects/compbio/data/pdb/2f6u.pdb.gz 2f6uA:Skipped atom 203, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 205, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 207, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 209, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 211, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 213, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 215, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 217, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 661, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 663, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 665, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 667, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 669, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 671, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 673, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 978, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 980, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 982, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 984, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 986, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 988, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 990, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 992, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1297, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1299, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1301, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1303, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1305, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1307, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1309, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1311, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1385, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1387, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1389, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1391, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1393, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1395, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1517, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1519, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1521, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1523, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1525, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1527, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1529, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1531, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1752, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1754, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1756, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1758, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1760, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1762, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1764, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1891, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1893, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1895, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1897, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1899, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1901, because occupancy 0.500 <= existing 0.500 in 2f6uA Skipped atom 1903, because occupancy 0.500 <= existing 0.500 in 2f6uA # T0355 read from 2f6uA/merged-good-all-a2m # 2f6uA read from 2f6uA/merged-good-all-a2m # adding 2f6uA to template set # found chain 2f6uA in template set T0355 30 :AFPGAPRYRNASM 2f6uA 1002 :RWRKWRHITKLDP T0355 43 :D 2f6uA 1020 :D T0355 51 :RDAERLIEGGMHGLIVE 2f6uA 1021 :EIIKAVADSGTDAVMIS T0355 75 :SKPDDIGPETSAF 2f6uA 1038 :GTQNVTYEKARTL T0355 105 :INVLANA 2f6uA 1051 :IEKVSQY T0355 113 :IPAFAIAKAGGAKF 2f6uA 1058 :GLPIVVEPSDPSNV T0355 127 :I 2f6uA 1073 :Y T0355 141 :GFMEGRAAEAMRYR 2f6uA 1074 :DVDYLFVPTVLNSA T0355 155 :SLLRAEHIKVFADS 2f6uA 1112 :EIIESEFIQIEGYI T0355 169 :HVKHGAH 2f6uA 1140 :LCNIDKE T0355 182 :SIDELTR 2f6uA 1147 :LAASYAL T0355 189 :DLAFFDADGV 2f6uA 1160 :NLPIIYIEYS T0355 206 :GNSASLEEIEEIGAATH 2f6uA 1170 :GTYGNPELVAEVKKVLD T0355 223 :LPLLVGSGV 2f6uA 1188 :ARLFYGGGI T0355 232 :NEGNIVEILKRTSGVIVASSLKEGG 2f6uA 1198 :SREKAREMLRYADTIIVGNVIYEKG T0355 264 :LAR 2f6uA 1223 :IDA Number of specific fragments extracted= 16 number of extra gaps= 0 total=351 Number of alignments=22 # 2f6uA read from 2f6uA/merged-good-all-a2m # found chain 2f6uA in template set Warning: unaligning (T0355)P29 because first residue in template chain is (2f6uA)M1001 T0355 30 :AFPGAPRYRNASMD 2f6uA 1002 :RWRKWRHITKLDPD T0355 51 :RDAERLIEGGMHGLIVENHGDVP 2f6uA 1021 :EIIKAVADSGTDAVMISGTQNVT T0355 81 :GPETSAFMSVVTDRIVRTAGVPV 2f6uA 1044 :YEKARTLIEKVSQYGLPIVVEPS T0355 123 :GAK 2f6uA 1070 :NVV T0355 127 :IR 2f6uA 1073 :YD T0355 142 :FMEGRAAEAM 2f6uA 1075 :VDYLFVPTVL T0355 152 :RYRSLLRAEHIKVFADS 2f6uA 1090 :DWITGKHAQWVRMHYEN T0355 169 :HVKHGA 2f6uA 1124 :YIVLNP T0355 177 :IT 2f6uA 1130 :DS T0355 179 :ADRSIDELTRDLAFFDADGVIAT 2f6uA 1145 :KELAASYALVGEKLFNLPIIYIE T0355 204 :RTGNSASLEEIEEIGAAT 2f6uA 1168 :YSGTYGNPELVAEVKKVL T0355 222 :HLPLLVGSGV 2f6uA 1187 :KARLFYGGGI T0355 232 :NEGNIVEILKRTSGVIVASSLKEGG 2f6uA 1198 :SREKAREMLRYADTIIVGNVIYEKG T0355 264 :LARV 2f6uA 1223 :IDAF Number of specific fragments extracted= 14 number of extra gaps= 0 total=365 Number of alignments=23 # 2f6uA read from 2f6uA/merged-good-all-a2m # found chain 2f6uA in template set T0355 24 :GMIHCPA 2f6uA 1008 :HITKLDP T0355 33 :G 2f6uA 1015 :D T0355 38 :RNASMD 2f6uA 1016 :RTNTDE T0355 45 :IY 2f6uA 1022 :II T0355 54 :ERLIEGGMHGLIVENH 2f6uA 1024 :KAVADSGTDAVMISGT T0355 78 :DDIGPETSA 2f6uA 1040 :QNVTYEKAR T0355 90 :VVTDRIV 2f6uA 1049 :TLIEKVS T0355 98 :TAGVPVGIN 2f6uA 1056 :QYGLPIVVE T0355 122 :GGAKFIRVNQWAN 2f6uA 1073 :YDVDYLFVPTVLN T0355 137 :VANEGFMEGRAAEAMR 2f6uA 1086 :SADGDWITGKHAQWVR T0355 153 :YRSLLRAEHIKVFADSHVKHGA 2f6uA 1110 :FTEIIESEFIQIEGYIVLNPDS T0355 175 :HAITADRSIDELTRDLAF 2f6uA 1137 :TKALCNIDKELAASYALV T0355 193 :FDADGVIAT 2f6uA 1159 :FNLPIIYIE T0355 204 :RTGNSASLEEIEEIGA 2f6uA 1168 :YSGTYGNPELVAEVKK T0355 220 :ATHLPLLVGSGV 2f6uA 1185 :LDKARLFYGGGI T0355 232 :NEGNIVEILKRTSGVIVAS 2f6uA 1198 :SREKAREMLRYADTIIVGN Number of specific fragments extracted= 16 number of extra gaps= 0 total=381 Number of alignments=24 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rpxA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rpxA expands to /projects/compbio/data/pdb/1rpx.pdb.gz 1rpxA:# T0355 read from 1rpxA/merged-good-all-a2m # 1rpxA read from 1rpxA/merged-good-all-a2m # adding 1rpxA to template set # found chain 1rpxA in template set T0355 2 :QTIS 1rpxA 4 :DKFS T0355 28 :CPAFPGAPRYRNASMD 1rpxA 8 :KSDIIVSPSILSANFS T0355 48 :ACMRDAERLIEGGMHGLIVENHGDV 1rpxA 24 :KLGEQVKAIEQAGCDWIHVDVMDGR T0355 74 :FSKPDDIGPE 1rpxA 49 :FVPNITIGPL T0355 104 :GINVLANAPIPAFAIAKAG 1rpxA 59 :VVDSLRPITDLPLDVHLMI T0355 127 :IRVNQWANA 1rpxA 78 :VEPDQRVPD T0355 137 :VANEGFMEGRAA 1rpxA 87 :FIKAGADIVSVH T0355 149 :EAMRYRSLLRAEHIKVFADSHVKHGAHAIT 1rpxA 106 :HLHRTINQIKSLGAKAGVVLNPGTPLTAIE T0355 182 :SIDELTRDLAFFDADGVI 1rpxA 136 :YVLDAVDLVLIMSVNPGF T0355 202 :GQRTGNSASLEEIEEIGAATH 1rpxA 154 :GGQSFIESQVKKISDLRKICA T0355 223 :LPLLVGSGVNEGNIVEILKR 1rpxA 180 :PWIEVDGGVGPKNAYKVIEA T0355 243 :TSGVIVASSLKEGGV 1rpxA 201 :ANALVAGSAVFGAPD T0355 263 :ELARVRSFV 1rpxA 216 :YAEAIKGIK Number of specific fragments extracted= 13 number of extra gaps= 0 total=394 Number of alignments=25 # 1rpxA read from 1rpxA/merged-good-all-a2m # found chain 1rpxA in template set T0355 16 :FGRSKALIGM 1rpxA 6 :FSKSDIIVSP T0355 36 :RYRNASMDA 1rpxA 16 :SILSANFSK T0355 49 :CMRDAERLIEGGMHGLIVENHGDV 1rpxA 25 :LGEQVKAIEQAGCDWIHVDVMDGR T0355 74 :FSKPDDIGP 1rpxA 49 :FVPNITIGP T0355 103 :VGINVLANAPIPAFAIAKAGG 1rpxA 58 :LVVDSLRPITDLPLDVHLMIV T0355 128 :RVNQWANA 1rpxA 79 :EPDQRVPD T0355 137 :VANEGFMEGRAA 1rpxA 87 :FIKAGADIVSVH T0355 149 :EAMRYRSLLRAEHIKVFADSHVKHGA 1rpxA 102 :SSTIHLHRTINQIKSLGAKAGVVLNP T0355 177 :ITADRSIDELTRDLAFFDA 1rpxA 128 :GTPLTAIEYVLDAVDLVLI T0355 196 :DGVIATGQRTGNSASLEEIEEIGAAT 1rpxA 148 :SVNPGFGGQSFIESQVKKISDLRKIC T0355 222 :HLPLLVGSGVNEGNIVEILKR 1rpxA 179 :NPWIEVDGGVGPKNAYKVIEA T0355 243 :TSGVIVASSLKEGGV 1rpxA 201 :ANALVAGSAVFGAPD T0355 263 :ELARVR 1rpxA 216 :YAEAIK T0355 273 :AAR 1rpxA 222 :GIK Number of specific fragments extracted= 14 number of extra gaps= 0 total=408 Number of alignments=26 # 1rpxA read from 1rpxA/merged-good-all-a2m # found chain 1rpxA in template set T0355 16 :FGRSKALIGMIHCPA 1rpxA 6 :FSKSDIIVSPSILSA T0355 35 :P 1rpxA 21 :N T0355 37 :YRN 1rpxA 22 :FSK T0355 49 :CMRDAERLIEGGMHGLIVENHGDVPFSKP 1rpxA 25 :LGEQVKAIEQAGCDWIHVDVMDGRFVPNI T0355 79 :DIGPET 1rpxA 54 :TIGPLV T0355 92 :TDRIVRTAGVPVGINVLANAPIPAFAIAKAGGAKFIRVNQ 1rpxA 60 :VDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHC T0355 139 :NEGFM 1rpxA 100 :EQSST T0355 145 :GRAAEAMRYRSLLRA 1rpxA 105 :IHLHRTINQIKSLGA T0355 163 :KVFADSHVKHGAHAITADRS 1rpxA 120 :KAGVVLNPGTPLTAIEYVLD T0355 194 :DADGVIATGQRTGNSAS 1rpxA 140 :AVDLVLIMSVNPGFGGQ T0355 211 :LEEIEEIGA 1rpxA 163 :VKKISDLRK T0355 220 :ATHLPLLVGSGVNEGNIVEILKR 1rpxA 177 :GLNPWIEVDGGVGPKNAYKVIEA T0355 243 :TSGVIVASSLKEGGV 1rpxA 201 :ANALVAGSAVFGAPD T0355 274 :ARPGLEALEHHHHH 1rpxA 216 :YAEAIKGIKTSKRP Number of specific fragments extracted= 14 number of extra gaps= 0 total=422 Number of alignments=27 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2tpsA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0355 read from 2tpsA/merged-good-all-a2m # 2tpsA read from 2tpsA/merged-good-all-a2m # found chain 2tpsA in training set Warning: unaligning (T0355)P77 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2tpsA)A65 Warning: unaligning (T0355)D78 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2tpsA)A65 Warning: unaligning (T0355)Q131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2tpsA)D94 Warning: unaligning (T0355)W132 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2tpsA)D94 Warning: unaligning (T0355)G206 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)T162 Warning: unaligning (T0355)N207 because of BadResidue code BAD_PEPTIDE at template residue (2tpsA)T162 T0355 2 :QTISDN 2tpsA 11 :GIRMTR T0355 8 :AANAIQEIFG 2tpsA 18 :SREMMKELLS T0355 34 :APRY 2tpsA 28 :VYFI T0355 38 :RNASM 2tpsA 37 :TKADP T0355 50 :MRDAERLIEGGMHGLIVENHGD 2tpsA 42 :VTVVQKALKGGATLYQFREKGG T0355 79 :DIGPETSAFMSVVTDR 2tpsA 66 :LTGEARIKFAEKAQAA T0355 119 :AKAGGAKFI 2tpsA 82 :CREAGVPFI T0355 129 :VN 2tpsA 91 :VN T0355 133 :AN 2tpsA 95 :VE T0355 136 :YVANEGFMEGRAAEAMRYRSLLRA 2tpsA 97 :LALNLKADGIHIGQEDANAKEVRA T0355 160 :EHIKVFADS 2tpsA 123 :GDMILGVSA T0355 172 :HGAHAIT 2tpsA 132 :HTMSEVK T0355 182 :SIDEL 2tpsA 139 :QAEED T0355 189 :DLAFFDADGVIATGQRT 2tpsA 144 :GADYVGLGPIYPTETKK T0355 208 :SA 2tpsA 163 :RA T0355 210 :SLEEIEEIGAA 2tpsA 167 :GVSLIEAVRRQ T0355 221 :THLPLLVGSGVNEGNIVEILKR 2tpsA 179 :ISIPIVGIGGITIDNAAPVIQA T0355 243 :TSGVIVASSLKEGGV 2tpsA 202 :ADGVSMISAISQAED T0355 263 :ELARVRSFVAAARPGLEA 2tpsA 217 :PESAARKFREEIQTYKTG Number of specific fragments extracted= 19 number of extra gaps= 3 total=441 Number of alignments=28 # 2tpsA read from 2tpsA/merged-good-all-a2m # found chain 2tpsA in training set Warning: unaligning (T0355)D78 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2tpsA)A65 Warning: unaligning (T0355)D79 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2tpsA)A65 Warning: unaligning (T0355)I127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2tpsA)D94 Warning: unaligning (T0355)R128 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2tpsA)D94 Warning: unaligning (T0355)G206 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)T162 Warning: unaligning (T0355)N207 because of BadResidue code BAD_PEPTIDE at template residue (2tpsA)T162 T0355 3 :TISDN 2tpsA 12 :IRMTR T0355 8 :AANAIQEIFG 2tpsA 18 :SREMMKELLS T0355 23 :IGMIHCPAFP 2tpsA 28 :VYFIMGSNNT T0355 39 :NAS 2tpsA 38 :KAD T0355 49 :CMRDAERLIEGGMHGLIVE 2tpsA 41 :PVTVVQKALKGGATLYQFR T0355 74 :FSKP 2tpsA 60 :EKGG T0355 80 :I 2tpsA 66 :L T0355 81 :GPETSAFMSVVTDR 2tpsA 68 :GEARIKFAEKAQAA T0355 105 :INVL 2tpsA 82 :CREA T0355 113 :IPAFAI 2tpsA 86 :GVPFIV T0355 123 :G 2tpsA 92 :N T0355 129 :VNQ 2tpsA 95 :VEL T0355 137 :VANEGFMEGRAAEAM 2tpsA 98 :ALNLKADGIHIGQED T0355 152 :R 2tpsA 114 :N T0355 154 :RSLLRAEH 2tpsA 115 :AKEVRAAI T0355 166 :ADSHVKHGA 2tpsA 123 :GDMILGVSA T0355 178 :TADRSIDELTR 2tpsA 132 :HTMSEVKQAEE T0355 193 :FDADGVIATG 2tpsA 143 :DGADYVGLGP T0355 203 :QRT 2tpsA 158 :TKK T0355 208 :SA 2tpsA 163 :RA T0355 210 :SLEEIEEIGAAT 2tpsA 167 :GVSLIEAVRRQG T0355 222 :HLPLLVGSGVNEGNIVEILKR 2tpsA 180 :SIPIVGIGGITIDNAAPVIQA T0355 243 :TSGVIVASSLKEG 2tpsA 202 :ADGVSMISAISQA T0355 261 :PVELARVRSFVAAARPGLEA 2tpsA 215 :EDPESAARKFREEIQTYKTG Number of specific fragments extracted= 24 number of extra gaps= 3 total=465 Number of alignments=29 # 2tpsA read from 2tpsA/merged-good-all-a2m # found chain 2tpsA in training set Warning: unaligning (T0355)D78 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (2tpsA)A65 Warning: unaligning (T0355)D79 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (2tpsA)A65 Warning: unaligning (T0355)N110 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2tpsA)D94 Warning: unaligning (T0355)A111 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2tpsA)D94 Warning: unaligning (T0355)R204 because of BadResidue code BAD_PEPTIDE in next template residue (2tpsA)T162 Warning: unaligning (T0355)T205 because of BadResidue code BAD_PEPTIDE at template residue (2tpsA)T162 T0355 8 :AANAIQEIFG 2tpsA 18 :SREMMKELLS T0355 22 :LIGMI 2tpsA 28 :VYFIM T0355 34 :APRYRNASM 2tpsA 33 :GSNNTKADP T0355 50 :MRDAERLIEGGMHGLIVENHGD 2tpsA 42 :VTVVQKALKGGATLYQFREKGG T0355 80 :IGPETSAFMS 2tpsA 66 :LTGEARIKFA T0355 90 :VVTDRIV 2tpsA 77 :KAQAACR T0355 98 :TAGVPVGIN 2tpsA 84 :EAGVPFIVN T0355 112 :PI 2tpsA 95 :VE T0355 118 :IAKAGGAKFIRVN 2tpsA 97 :LALNLKADGIHIG T0355 142 :FMEGRAAEA 2tpsA 110 :QEDANAKEV T0355 154 :RSLLR 2tpsA 119 :RAAIG T0355 161 :HIKVFADSHV 2tpsA 124 :DMILGVSAHT T0355 184 :DELTRDLAFFDADGVIA 2tpsA 134 :MSEVKQAEEDGADYVGL T0355 201 :TGQ 2tpsA 158 :TKK T0355 206 :GNSASLEEIEEIGA 2tpsA 163 :RAVQGVSLIEAVRR T0355 220 :ATHLPLLVGSGVNEGNIVEILKR 2tpsA 178 :GISIPIVGIGGITIDNAAPVIQA T0355 243 :TSGVIVASSLKEGGV 2tpsA 202 :ADGVSMISAISQAED T0355 264 :LARVRSFVAAARPGLEA 2tpsA 218 :ESAARKFREEIQTYKTG Number of specific fragments extracted= 18 number of extra gaps= 3 total=483 Number of alignments=30 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1w8sA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1w8sA expands to /projects/compbio/data/pdb/1w8s.pdb.gz 1w8sA:Skipped atom 267, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 269, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 271, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 273, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 790, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 792, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1672, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1674, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1676, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1678, because occupancy 0.350 <= existing 0.650 in 1w8sA Skipped atom 1680, because occupancy 0.350 <= existing 0.650 in 1w8sA # T0355 read from 1w8sA/merged-good-all-a2m # 1w8sA read from 1w8sA/merged-good-all-a2m # adding 1w8sA to template set # found chain 1w8sA in template set Warning: unaligning (T0355)R275 because last residue in template chain is (1w8sA)Y252 T0355 9 :ANAIQEIFGRSKAL 1w8sA 5 :TEKFLRIFARRGKS T0355 36 :RYRNASM 1w8sA 19 :IILAYDH T0355 46 :YDACMRDAER 1w8sA 43 :PEYILRLARD T0355 59 :GGMHGLIVE 1w8sA 53 :AGFDGVVFQ T0355 102 :PVGINVLANAPIPAFAIAKAG 1w8sA 62 :RGIAEKYYDGSVPLILKLNGK T0355 124 :AKF 1w8sA 92 :SVA T0355 127 :IRVN 1w8sA 96 :CSVE T0355 136 :YVANEGFMEGRAAEAM 1w8sA 100 :EAVSLGASAVGYTIYP T0355 155 :SLLRAEHIKVFADSHVKHG 1w8sA 132 :RDAVKFDLPLVVESFPRGG T0355 175 :HAITADR 1w8sA 151 :KVVNETA T0355 182 :SIDELTR 1w8sA 160 :IVAYAAR T0355 189 :DLAFFDADGVI 1w8sA 172 :GADAMKIKYTG T0355 210 :SLEEIEEIGAATH 1w8sA 183 :DPKTFSWAVKVAG T0355 223 :LPLLVGSG 1w8sA 197 :VPVLMSGG T0355 231 :V 1w8sA 207 :T T0355 232 :NEG 1w8sA 209 :TEE T0355 235 :NIVEILKR 1w8sA 216 :QVEGVLEA T0355 243 :TSGVIVASSLKEGGV 1w8sA 225 :ALGIAVGRNVWQRRD T0355 263 :ELARVRSFVAAA 1w8sA 240 :ALKFARALAELV Number of specific fragments extracted= 19 number of extra gaps= 0 total=502 Number of alignments=31 # 1w8sA read from 1w8sA/merged-good-all-a2m # found chain 1w8sA in template set Warning: unaligning (T0355)N7 because first residue in template chain is (1w8sA)N3 Warning: unaligning (T0355)R275 because last residue in template chain is (1w8sA)Y252 T0355 8 :AANAIQEIF 1w8sA 4 :LTEKFLRIF T0355 17 :GRSKALIGMIH 1w8sA 14 :RRGKSIILAYD T0355 29 :PAFPG 1w8sA 30 :GPADF T0355 39 :NASMD 1w8sA 35 :MDNPD T0355 44 :AIYDACMRDAE 1w8sA 41 :ADPEYILRLAR T0355 58 :EGGMHGLIVE 1w8sA 52 :DAGFDGVVFQ T0355 102 :PVGINVLANAPIPAFAIAKA 1w8sA 62 :RGIAEKYYDGSVPLILKLNG T0355 126 :F 1w8sA 94 :A T0355 127 :IRVNQ 1w8sA 96 :CSVEE T0355 137 :VANEGFMEGRAAEA 1w8sA 101 :AVSLGASAVGYTIY T0355 151 :M 1w8sA 123 :M T0355 152 :RYRSLLRAEHIKVFADSHVKHGAH 1w8sA 125 :EELARIKRDAVKFDLPLVVESFPR T0355 178 :T 1w8sA 149 :G T0355 179 :ADRSIDELTRDLAFFDADGVIAT 1w8sA 157 :APEIVAYAARIALELGADAMKIK T0355 204 :RTG 1w8sA 180 :YTG T0355 210 :SLEEIEEIGAAT 1w8sA 183 :DPKTFSWAVKVA T0355 222 :HLPLLVGSG 1w8sA 196 :KVPVLMSGG T0355 231 :V 1w8sA 207 :T T0355 232 :NEGNIVE 1w8sA 209 :TEEDFLK T0355 239 :ILKR 1w8sA 220 :VLEA T0355 243 :TSGVIVASSLKEG 1w8sA 225 :ALGIAVGRNVWQR T0355 261 :PVELARVRSFVAAA 1w8sA 238 :RDALKFARALAELV Number of specific fragments extracted= 22 number of extra gaps= 0 total=524 Number of alignments=32 # 1w8sA read from 1w8sA/merged-good-all-a2m # found chain 1w8sA in template set Warning: unaligning (T0355)N7 because first residue in template chain is (1w8sA)N3 T0355 8 :AANAIQEIF 1w8sA 4 :LTEKFLRIF T0355 17 :GRSKALIGMIH 1w8sA 14 :RRGKSIILAYD T0355 29 :PAFPGAPRYR 1w8sA 32 :ADFMDNPDSA T0355 41 :SMDAIYDACMR 1w8sA 42 :DPEYILRLARD T0355 59 :GGMHGLIVE 1w8sA 53 :AGFDGVVFQ T0355 92 :TDRIVRTA 1w8sA 62 :RGIAEKYY T0355 100 :GVPVGINV 1w8sA 72 :SVPLILKL T0355 109 :ANAPIP 1w8sA 95 :NCSVEE T0355 119 :AKAGGAKFIRVNQWAN 1w8sA 101 :AVSLGASAVGYTIYPG T0355 140 :EGFMEGRAAEAMRYRSLLRAEHIKVFADSHVKHGAHAITADRSI 1w8sA 117 :SGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEI T0355 184 :DELTRDLAFFDADGVIATG 1w8sA 162 :AYAARIALELGADAMKIKY T0355 208 :SASLEEIEEIGA 1w8sA 181 :TGDPKTFSWAVK T0355 220 :ATHLPLLVGSG 1w8sA 194 :AGKVPVLMSGG T0355 232 :NEGNIVEILKR 1w8sA 209 :TEEDFLKQVEG T0355 243 :TSGVIVASSL 1w8sA 225 :ALGIAVGRNV T0355 253 :KEG 1w8sA 237 :RRD T0355 264 :LARVRSFVAAA 1w8sA 241 :LKFARALAELV Number of specific fragments extracted= 17 number of extra gaps= 0 total=541 Number of alignments=33 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gteA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0355 read from 1gteA/merged-good-all-a2m # 1gteA read from 1gteA/merged-good-all-a2m # found chain 1gteA in training set Warning: unaligning (T0355)A147 because of BadResidue code BAD_PEPTIDE in next template residue (1gteA)T735 Warning: unaligning (T0355)A148 because of BadResidue code BAD_PEPTIDE at template residue (1gteA)T735 T0355 6 :DNAANAIQEIFG 1gteA 615 :EKTAAYWCQSVT T0355 18 :R 1gteA 631 :D T0355 28 :CPAF 1gteA 632 :FPDN T0355 33 :GAPRYRNASMD 1gteA 636 :IVIASIMCSYN T0355 46 :YDACMRDAERLIEGGMHGLIVE 1gteA 647 :KNDWMELSRKAEASGADALELN T0355 70 :GDVPF 1gteA 669 :LSCPH T0355 75 :SKPDDIGPETSAF 1gteA 682 :LACGQDPELVRNI T0355 105 :INVLANAPIPAFAIAKAGGAK 1gteA 695 :CRWVRQAVQIPFFAKLTPNVT T0355 128 :RVNQWAN 1gteA 716 :DIVSIAR T0355 136 :YVANEGFMEGR 1gteA 723 :AAKEGGADGVT T0355 149 :EAM 1gteA 736 :NTV T0355 164 :VFADSHVKHGAHAITADRSI 1gteA 741 :LMGLKADGTPWPAVGAGKRT T0355 196 :DGVIATGQR 1gteA 761 :TYGGVSGTA T0355 208 :SASLEEIEEIGAATH 1gteA 772 :PIALRAVTTIARALP T0355 223 :LPLLVGSGV 1gteA 788 :FPILATGGI T0355 232 :NEGNIVEILKR 1gteA 798 :SAESGLQFLHS T0355 243 :TSGVIVASSLK 1gteA 810 :ASVLQVCSAVQ Number of specific fragments extracted= 17 number of extra gaps= 1 total=558 Number of alignments=34 # 1gteA read from 1gteA/merged-good-all-a2m # found chain 1gteA in training set Warning: unaligning (T0355)A147 because of BadResidue code BAD_PEPTIDE in next template residue (1gteA)T735 Warning: unaligning (T0355)A148 because of BadResidue code BAD_PEPTIDE at template residue (1gteA)T735 T0355 6 :DNAANAIQEIFG 1gteA 619 :AYWCQSVTELKA T0355 18 :RSKALIGMIHCP 1gteA 633 :PDNIVIASIMCS T0355 40 :AS 1gteA 645 :YN T0355 46 :YDACMRDAERLIEGGMHGLIVE 1gteA 647 :KNDWMELSRKAEASGADALELN T0355 70 :GDVP 1gteA 669 :LSCP T0355 75 :SKPDDIGPETSAF 1gteA 682 :LACGQDPELVRNI T0355 105 :INVLANAPIPAFAIAKAGGAK 1gteA 695 :CRWVRQAVQIPFFAKLTPNVT T0355 128 :RVNQWANA 1gteA 716 :DIVSIARA T0355 137 :VANEGFMEGR 1gteA 724 :AKEGGADGVT T0355 149 :EAM 1gteA 736 :NTV T0355 167 :DSHVKHGAHAIT 1gteA 740 :GLMGLKADGTPW T0355 179 :AD 1gteA 755 :GA T0355 192 :FFDADGVIATGQRTG 1gteA 757 :GKRTTYGGVSGTAIR T0355 208 :SASLEEIEEIGAAT 1gteA 772 :PIALRAVTTIARAL T0355 222 :HLPLLVGSGV 1gteA 787 :GFPILATGGI T0355 232 :NEGNIVEILKR 1gteA 798 :SAESGLQFLHS T0355 243 :TSGVIVASSLKE 1gteA 810 :ASVLQVCSAVQN Number of specific fragments extracted= 17 number of extra gaps= 1 total=575 Number of alignments=35 # 1gteA read from 1gteA/merged-good-all-a2m # found chain 1gteA in training set Warning: unaligning (T0355)P73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gteA)M680 Warning: unaligning (T0355)F74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1gteA)M680 Warning: unaligning (T0355)D167 because of BadResidue code BAD_PEPTIDE in next template residue (1gteA)T735 Warning: unaligning (T0355)S168 because of BadResidue code BAD_PEPTIDE at template residue (1gteA)T735 T0355 6 :DNAANAIQEIFG 1gteA 619 :AYWCQSVTELKA T0355 18 :RSKALIGMIHCP 1gteA 633 :PDNIVIASIMCS T0355 40 :ASMDAIY 1gteA 645 :YNKNDWM T0355 51 :RDAERLIEGGMHGLIVENHGDV 1gteA 652 :ELSRKAEASGADALELNLSCPH T0355 75 :S 1gteA 681 :G T0355 81 :GPETSA 1gteA 687 :DPELVR T0355 90 :VVTDRIVRTAGVPVGINVLANA 1gteA 693 :NICRWVRQAVQIPFFAKLTPNV T0355 145 :GRAAEAMRYRSLLRA 1gteA 715 :TDIVSIARAAKEGGA T0355 163 :KVFA 1gteA 730 :DGVT T0355 169 :HVKHGAHAITADRSI 1gteA 736 :NTVSGLMGLKADGTP T0355 202 :GQRTGNSAS 1gteA 753 :AVGAGKRTT T0355 211 :LEEIEEIGA 1gteA 771 :RPIALRAVT T0355 220 :ATHLPLLVGSGV 1gteA 785 :LPGFPILATGGI T0355 234 :GNIVEILKR 1gteA 800 :ESGLQFLHS T0355 243 :TSGVIVAS 1gteA 810 :ASVLQVCS Number of specific fragments extracted= 15 number of extra gaps= 2 total=590 Number of alignments=36 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1i4nA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1i4nA expands to /projects/compbio/data/pdb/1i4n.pdb.gz 1i4nA:# T0355 read from 1i4nA/merged-good-all-a2m # 1i4nA read from 1i4nA/merged-good-all-a2m # adding 1i4nA to template set # found chain 1i4nA in template set T0355 1 :MQTISDNAA 1i4nA 15 :ILEIDGENL T0355 10 :NAIQEIFGRSKA 1i4nA 30 :HRFLEVLSGKER T0355 22 :LIGMIHCPAFPGAPRYRNASMDAIYDACMRD 1i4nA 44 :IIAEFKKASPSAGDINADASLEDFIRMYDEL T0355 61 :MHGLIVENHGDV 1i4nA 75 :ADAISILTEKHY T0355 74 :FSKP 1i4nA 87 :FKGD T0355 102 :PVGINVLANAPIPAFAIAKAG 1i4nA 91 :PAFVRAARNLTCRPILAKDFY T0355 127 :IR 1i4nA 112 :ID T0355 130 :NQWAN 1i4nA 114 :TVQVK T0355 136 :YVANEGFMEGRAAEAMRYR 1i4nA 119 :LASSVGADAILIIARILTA T0355 155 :SLLRAEHIKVFADS 1i4nA 145 :EAAEELGMDSLVEV T0355 172 :HGAHAIT 1i4nA 159 :HSREDLE T0355 182 :SIDELT 1i4nA 166 :KVFSVI T0355 194 :DADGVIA 1i4nA 172 :RPKIIGI T0355 201 :TGQRTGNSASLEEIEEIGAATH 1i4nA 180 :TRDLDTFEIKKNVLWELLPLVP T0355 223 :LPLLVGSGV 1i4nA 204 :TVVVAESGI T0355 232 :NEGNIVEILKRTSGVIVASSLKEGGV 1i4nA 214 :DPRELKDLRGKVNAVLVGTSIMKAEN T0355 267 :VRSFVAAARPG 1i4nA 240 :PRRFLEEMRAW Number of specific fragments extracted= 17 number of extra gaps= 0 total=607 Number of alignments=37 # 1i4nA read from 1i4nA/merged-good-all-a2m # found chain 1i4nA in template set T0355 10 :NAIQEIFGRSKA 1i4nA 30 :HRFLEVLSGKER T0355 22 :LIGMIHCPAFPGAPRYRN 1i4nA 43 :KIIAEFKKASPSAGDINA T0355 40 :ASMDAIYDACMRD 1i4nA 62 :ASLEDFIRMYDEL T0355 61 :MHGLIVENHGDVPFSKP 1i4nA 75 :ADAISILTEKHYFKGDP T0355 103 :VGINVLANAPIPAFAI 1i4nA 92 :AFVRAARNLTCRPILA T0355 123 :GAKFIR 1i4nA 108 :KDFYID T0355 130 :NQWANA 1i4nA 114 :TVQVKL T0355 137 :VANEGFMEGRAAEAM 1i4nA 120 :ASSVGADAILIIARI T0355 152 :RYRSLLRAEHIKVFADSHVKHG 1i4nA 138 :EQIKEIYEAAEELGMDSLVEVH T0355 179 :ADRSIDELTRD 1i4nA 160 :SREDLEKVFSV T0355 193 :FDADGVIAT 1i4nA 171 :IRPKIIGIN T0355 202 :GQRTGNSASLEEIEEIGAAT 1i4nA 181 :RDLDTFEIKKNVLWELLPLV T0355 222 :HLPLLVGSGV 1i4nA 203 :DTVVVAESGI T0355 232 :NEGNIVEILKRTSGVIVASSLKEGGV 1i4nA 214 :DPRELKDLRGKVNAVLVGTSIMKAEN T0355 267 :VRSFVAAARPG 1i4nA 240 :PRRFLEEMRAW Number of specific fragments extracted= 15 number of extra gaps= 0 total=622 Number of alignments=38 # 1i4nA read from 1i4nA/merged-good-all-a2m # found chain 1i4nA in template set T0355 6 :DNAANAIQEIFGRSKALIGMIHCPAFPGAPRYR 1i4nA 27 :RRNHRFLEVLSGKERVKIIAEFKKASPSAGDIN T0355 39 :NASMDAIYDACMRD 1i4nA 61 :DASLEDFIRMYDEL T0355 61 :MHGLIVENHGDVPFSKP 1i4nA 75 :ADAISILTEKHYFKGDP T0355 90 :VVTDRIVRTAGVPVGINVLANAPIP 1i4nA 92 :AFVRAARNLTCRPILAKDFYIDTVQ T0355 116 :FAIAKAGGAKFIRVNQ 1i4nA 117 :VKLASSVGADAILIIA T0355 140 :EGFMEGRAAEAMRYRSLLR 1i4nA 133 :RILTAEQIKEIYEAAEELG T0355 162 :IKVFADSHV 1i4nA 152 :MDSLVEVHS T0355 184 :DELTRDLAFF 1i4nA 161 :REDLEKVFSV T0355 194 :DADGVIATG 1i4nA 172 :RPKIIGINT T0355 203 :QRTGNSASLEEIEEIGA 1i4nA 182 :DLDTFEIKKNVLWELLP T0355 220 :ATHLPLLVGSGV 1i4nA 201 :PDDTVVVAESGI T0355 232 :NEGNIVEILKRTSGVIVASSLKEGG 1i4nA 214 :DPRELKDLRGKVNAVLVGTSIMKAE T0355 267 :VRSFVAAARPG 1i4nA 240 :PRRFLEEMRAW Number of specific fragments extracted= 13 number of extra gaps= 0 total=635 Number of alignments=39 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wq5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0355/1wq5A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0355/1wq5A/merged-good-all-a2m.gz for input Trying 1wq5A/merged-good-all-a2m Error: Couldn't open file 1wq5A/merged-good-all-a2m or 1wq5A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ho1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ho1A expands to /projects/compbio/data/pdb/1ho1.pdb.gz 1ho1A:# T0355 read from 1ho1A/merged-good-all-a2m # 1ho1A read from 1ho1A/merged-good-all-a2m # adding 1ho1A to template set # found chain 1ho1A in template set Warning: unaligning (T0355)A150 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ho1A)E104 T0355 41 :SMD 1ho1A 24 :YPD T0355 49 :CMRDAERLIEGGMHGLIVENHGDVPFSK 1ho1A 27 :PVQAAFIAEQAGADGITVHLREDRRHIT T0355 80 :I 1ho1A 55 :D T0355 103 :VGINVLANAPIPAFAIAKAG 1ho1A 56 :RDVRILRQTLDTRMNLEMAV T0355 129 :VNQWAN 1ho1A 76 :TEEMLA T0355 136 :YVANEGFMEGRAAE 1ho1A 82 :IAVETKPHFCCLVP T0355 155 :SLLRAEHIKVFADSH 1ho1A 121 :KRLADAGIQVSLFID T0355 172 :HGAHAIT 1ho1A 136 :ADEEQIK T0355 182 :SIDEL 1ho1A 143 :AAAEV T0355 189 :DLAFFDA 1ho1A 148 :GAPFIEI T0355 200 :ATGQ 1ho1A 155 :HTGC T0355 204 :RTGNSA 1ho1A 161 :DAKTDA T0355 210 :SLEEIEEIGAA 1ho1A 171 :ELARIAKAATF T0355 221 :THLPLLVGSGVNEGNIVEILKR 1ho1A 185 :LGLKVNAGHGLTYHNVKAIAAI T0355 243 :TSGVIVASSLKEGGVWWN 1ho1A 209 :MHELNIGHAIIGRAVMTG T0355 263 :ELARVRSFVAAARPGL 1ho1A 227 :LKDAVAEMKRLMLEAR Number of specific fragments extracted= 16 number of extra gaps= 0 total=651 Number of alignments=40 # 1ho1A read from 1ho1A/merged-good-all-a2m # found chain 1ho1A in template set Warning: unaligning (T0355)A150 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ho1A)E104 T0355 48 :ACMRDAERLIEGGMHGLIVENHGDVPFSKP 1ho1A 26 :DPVQAAFIAEQAGADGITVHLREDRRHITD T0355 103 :VGINVLANAPIPAFAIAKAGG 1ho1A 56 :RDVRILRQTLDTRMNLEMAVT T0355 130 :NQWANA 1ho1A 77 :EEMLAI T0355 137 :VANEGFMEGRA 1ho1A 83 :AVETKPHFCCL T0355 149 :E 1ho1A 95 :P T0355 151 :M 1ho1A 109 :V T0355 152 :RYRSLLRAEHI 1ho1A 111 :GQRDKMRDACK T0355 163 :KVFADSHVKH 1ho1A 125 :DAGIQVSLFI T0355 177 :ITADRSIDELTR 1ho1A 135 :DADEEQIKAAAE T0355 193 :FDADGVIAT 1ho1A 147 :VGAPFIEIH T0355 202 :GQRTGNSA 1ho1A 157 :GCYADAKT T0355 210 :SLEEIEEIGAAT 1ho1A 171 :ELARIAKAATFA T0355 222 :HLPLLVGSGVNEGNIVEILKR 1ho1A 186 :GLKVNAGHGLTYHNVKAIAAI T0355 243 :TSGVIVASSLKEGGV 1ho1A 209 :MHELNIGHAIIGRAV T0355 260 :NPVELARVRSFVAAARPGL 1ho1A 224 :MTGLKDAVAEMKRLMLEAR Number of specific fragments extracted= 15 number of extra gaps= 0 total=666 Number of alignments=41 # 1ho1A read from 1ho1A/merged-good-all-a2m # found chain 1ho1A in template set Warning: unaligning (T0355)W132 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ho1A)E104 Warning: unaligning (T0355)E140 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ho1A)E104 T0355 20 :KALIGMI 1ho1A 3 :ELLLGVN T0355 32 :PGAP 1ho1A 20 :RGTA T0355 37 :YRN 1ho1A 24 :YPD T0355 49 :CMRDAERLIEGGMHGLIVENHGDVPFSKP 1ho1A 27 :PVQAAFIAEQAGADGITVHLREDRRHITD T0355 90 :VVTDRIVRTAGVPVGINVLA 1ho1A 56 :RDVRILRQTLDTRMNLEMAV T0355 112 :PIPAFAIAKAGGAKFIRVNQ 1ho1A 76 :TEEMLAIAVETKPHFCCLVP T0355 141 :GFME 1ho1A 105 :GGLD T0355 145 :GRAAEAMRYRSLLRA 1ho1A 114 :DKMRDACKRLADAGI T0355 161 :HIKVFADSH 1ho1A 129 :QVSLFIDAD T0355 184 :DELTRDLAFFDADGVIA 1ho1A 138 :EEQIKAAAEVGAPFIEI T0355 201 :TGQRTGNSAS 1ho1A 156 :TGCYADAKTD T0355 211 :LEEIEEIGA 1ho1A 172 :LARIAKAAT T0355 220 :ATHLPLLVGSGVNEGNIVEILKR 1ho1A 184 :SLGLKVNAGHGLTYHNVKAIAAI T0355 243 :TSGVIVASSL 1ho1A 209 :MHELNIGHAI T0355 264 :LARVRSFVAAARPGL 1ho1A 228 :KDAVAEMKRLMLEAR Number of specific fragments extracted= 15 number of extra gaps= 0 total=681 Number of alignments=42 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1w0mA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1w0mA expands to /projects/compbio/data/pdb/1w0m.pdb.gz 1w0mA:# T0355 read from 1w0mA/merged-good-all-a2m # 1w0mA read from 1w0mA/merged-good-all-a2m # adding 1w0mA to template set # found chain 1w0mA in template set Warning: unaligning (T0355)G277 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1w0mA)R226 T0355 62 :HGLIVE 1w0mA 4 :PILIIN T0355 70 :GD 1w0mA 10 :FK T0355 75 :SKPDDIGPETSAFMSVV 1w0mA 12 :AYGEAAGKRAVELAKAA T0355 92 :TDR 1w0mA 32 :ARE T0355 95 :IVRTAGVPVG 1w0mA 36 :GVNIVVAPNH T0355 105 :INVLANAPIPAFAI 1w0mA 48 :LGLVSQSVDIPVYA T0355 122 :GGAKF 1w0mA 62 :QGADV T0355 127 :IR 1w0mA 68 :AG T0355 132 :WAN 1w0mA 77 :SLE T0355 136 :YVANEGFMEGRAAE 1w0mA 80 :NIKEAGGSGVILNH T0355 150 :AMRYRSLLRAEHIKVFADSH 1w0mA 103 :LARLVAKAKSLGLDVVVCAP T0355 179 :ADRSIDELTRD 1w0mA 123 :DPRTSLAAAAL T0355 194 :DADGVIATGQ 1w0mA 134 :GPHAVAVEPP T0355 204 :RTGNSA 1w0mA 147 :GTGRAV T0355 210 :SLEEIEEIGAAT 1w0mA 156 :KPEAIVETVGLV T0355 222 :HLPLLVGSGV 1w0mA 173 :EVSVITGAGI T0355 232 :NEGNIVEILKR 1w0mA 184 :SGDDVAAALRL T0355 243 :TSGVIVASSLKEGGV 1w0mA 196 :TRGVLLASAAVKAKD T0355 263 :ELARVRSFVAAARP 1w0mA 211 :PYAKIVELAKPLSE Number of specific fragments extracted= 19 number of extra gaps= 1 total=700 Number of alignments=43 # 1w0mA read from 1w0mA/merged-good-all-a2m # found chain 1w0mA in template set Warning: unaligning (T0355)G277 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1w0mA)R226 T0355 62 :HGLIVE 1w0mA 4 :PILIIN T0355 70 :G 1w0mA 10 :F T0355 74 :FSKPDDIGPETSAFMSVVTDRI 1w0mA 11 :KAYGEAAGKRAVELAKAAERAA T0355 96 :VRTAGV 1w0mA 37 :VNIVVA T0355 102 :PVGINVLANAPIPAFAIAKA 1w0mA 45 :HLELGLVSQSVDIPVYAQGA T0355 123 :GAKFIRVNQ 1w0mA 72 :HTAHVSLEN T0355 137 :VANEGFMEGRA 1w0mA 81 :IKEAGGSGVIL T0355 148 :AEAM 1w0mA 96 :APLK T0355 152 :RYRSLLRAEHIKVFADSHVKHGA 1w0mA 101 :NDLARLVAKAKSLGLDVVVCAPD T0355 183 :IDELTRDLA 1w0mA 124 :PRTSLAAAA T0355 193 :FDADGVIATG 1w0mA 133 :LGPHAVAVEP T0355 203 :QRTGNSA 1w0mA 146 :IGTGRAV T0355 210 :SLEEIEEIGAAT 1w0mA 156 :KPEAIVETVGLV T0355 222 :HLPLLVGSGV 1w0mA 173 :EVSVITGAGI T0355 232 :NEGNIVEILKR 1w0mA 184 :SGDDVAAALRL T0355 243 :TSGVIVASSLKEG 1w0mA 196 :TRGVLLASAAVKA T0355 261 :PVELARVRSFVAAARP 1w0mA 209 :KDPYAKIVELAKPLSE Number of specific fragments extracted= 17 number of extra gaps= 1 total=717 Number of alignments=44 # 1w0mA read from 1w0mA/merged-good-all-a2m # found chain 1w0mA in template set T0355 19 :SKALIGMI 1w0mA 2 :RLPILIIN T0355 31 :FPGAPRYRNASMDAIYDACMRDAERL 1w0mA 10 :FKAYGEAAGKRAVELAKAAERAAREL T0355 60 :GMHGLIVENHGD 1w0mA 36 :GVNIVVAPNHLE T0355 92 :TDRIVRTAGVPVGIN 1w0mA 48 :LGLVSQSVDIPVYAQ T0355 116 :FAIAKAGGAKFIRV 1w0mA 78 :LENIKEAGGSGVIL T0355 134 :N 1w0mA 92 :N T0355 137 :VANEGFMEGRAAEAMRYRSLLR 1w0mA 93 :HSEAPLKLNDLARLVAKAKSLG T0355 162 :IKVFADSHVK 1w0mA 115 :LDVVVCAPDP T0355 184 :DELT 1w0mA 125 :RTSL T0355 189 :DLAFFDADGVIATGQRTGNSAS 1w0mA 129 :AAAALGPHAVAVEPPELIGTGR T0355 211 :LEEIEEIGA 1w0mA 157 :PEAIVETVG T0355 220 :ATHLPLLVGSGV 1w0mA 171 :FPEVSVITGAGI T0355 232 :NEGNIVEILKR 1w0mA 184 :SGDDVAAALRL T0355 243 :TSGVIVASSLKEGG 1w0mA 196 :TRGVLLASAAVKAK T0355 264 :LARVRSFVAAARP 1w0mA 212 :YAKIVELAKPLSE Number of specific fragments extracted= 15 number of extra gaps= 0 total=732 Number of alignments=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q7zA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0355 read from 1q7zA/merged-good-all-a2m # 1q7zA read from 1q7zA/merged-good-all-a2m # found chain 1q7zA in training set T0355 9 :ANAIQEIFGRSKALIGMIHCPAFPGA 1q7zA 90 :VRIARRAAGEKLVFGDIGPTGELPYP T0355 37 :YRNASMDAIYDACMRDAERLIEGGMHGLIVENHGDV 1q7zA 116 :LGSTLFEEFYENFRETVEIMVEEGVDGIIFETFSDI T0355 82 :PETSAFMSVVTDR 1q7zA 152 :LELKAAVLAAREV T0355 109 :A 1q7zA 165 :S T0355 111 :APIPAFAIAKA 1q7zA 166 :RDVFLIAHMTF T0355 122 :GGAKF 1q7zA 180 :GRSLT T0355 127 :IRVNQWAN 1q7zA 186 :TDPANFAI T0355 136 :YVANEGFMEGRAAEAMRYR 1q7zA 194 :TFDELDIDALGINCSLGPE T0355 155 :SLLR 1q7zA 344 :KEAK T0355 159 :AEHIK 1q7zA 351 :EKGAE T0355 165 :FADSHVKHGAHAIT 1q7zA 356 :VLDVNFGIESQIDV T0355 182 :SIDE 1q7zA 370 :RYVE T0355 186 :LTRDLAFFDAD 1q7zA 382 :VSNVPLSLDIQ T0355 210 :SLEEIEEIGAATH 1q7zA 393 :NVDLTERALRAYP T0355 223 :LPLLVGSGVNEGNIVEILKR 1q7zA 407 :RSLFNSAKVDEEELEMKINL T0355 243 :TSGVIV 1q7zA 431 :GGTLIV T0355 255 :GGVWWNP 1q7zA 439 :MGKDVPK T0355 263 :ELARVRSFVAAARPGLEAL 1q7zA 446 :SFEERKEYFEKALKILERH Number of specific fragments extracted= 18 number of extra gaps= 0 total=750 Number of alignments=46 # 1q7zA read from 1q7zA/merged-good-all-a2m # found chain 1q7zA in training set T0355 7 :NAANAIQEIFG 1q7zA 88 :NAVRIARRAAG T0355 19 :SKALIGMIHCPAFPGAPR 1q7zA 99 :EKLVFGDIGPTGELPYPL T0355 38 :RNASMDAIYDACMRDAERLIEGGMHGLIVENHGD 1q7zA 117 :GSTLFEEFYENFRETVEIMVEEGVDGIIFETFSD T0355 84 :TSAFMSVV 1q7zA 151 :ILELKAAV T0355 103 :VGINVLANAPIP 1q7zA 159 :LAAREVSRDVFL T0355 116 :FAIAKA 1q7zA 171 :IAHMTF T0355 122 :GGAKF 1q7zA 180 :GRSLT T0355 127 :IRVNQWANA 1q7zA 186 :TDPANFAIT T0355 137 :VANEGFMEGRAAEAM 1q7zA 195 :FDELDIDALGINCSL T0355 152 :RYRSLLRAEHIKV 1q7zA 212 :EEILPIFQELSQY T0355 166 :ADSHVKHGA 1q7zA 225 :TDKFLVVEP T0355 177 :IT 1q7zA 234 :NA T0355 179 :ADRSIDELTRDLA 1q7zA 339 :EEIVIKEAKTQVE T0355 193 :FDADGVIAT 1q7zA 352 :KGAEVLDVN T0355 202 :GQRTGN 1q7zA 362 :GIESQI T0355 210 :SLEEIEEIGAAT 1q7zA 368 :DVRYVEKIVQTL T0355 222 :HLPLLVG 1q7zA 384 :NVPLSLD T0355 229 :SGVNEGNIVEILKR 1q7zA 413 :AKVDEEELEMKINL T0355 243 :TSGVIV 1q7zA 431 :GGTLIV T0355 256 :GVWWNP 1q7zA 440 :GKDVPK T0355 263 :ELARVRSFVAAARPGLEA 1q7zA 446 :SFEERKEYFEKALKILER Number of specific fragments extracted= 21 number of extra gaps= 0 total=771 Number of alignments=47 # 1q7zA read from 1q7zA/merged-good-all-a2m # found chain 1q7zA in training set T0355 6 :DNAANAIQEIFG 1q7zA 87 :RNAVRIARRAAG T0355 19 :SKALIGMIHCP 1q7zA 99 :EKLVFGDIGPT T0355 32 :PG 1q7zA 110 :GE T0355 34 :APRYRNASMDAIYDACMRDAERLIEGGMHGLIVENHGD 1q7zA 113 :PYPLGSTLFEEFYENFRETVEIMVEEGVDGIIFETFSD T0355 85 :SAFMSVVTDRIVRTAGVPVGINVLA 1q7zA 151 :ILELKAAVLAAREVSRDVFLIAHMT T0355 110 :NAPIPAFAIAKAGGAKFIRV 1q7zA 186 :TDPANFAITFDELDIDALGI T0355 131 :QWA 1q7zA 228 :FLV T0355 134 :NAYVANEGFMEGRAAEAM 1q7zA 267 :NIFGGCCGTTPEHVKLFR T0355 155 :SLLR 1q7zA 285 :KVLG T0355 159 :AEHIKVFADSHVKHGA 1q7zA 312 :FDHFVVIGERINPAGR T0355 177 :ITADR 1q7zA 337 :GNEEI T0355 183 :IDELTRDLAFFDADGVIATGQRTG 1q7zA 342 :VIKEAKTQVEKGAEVLDVNFGIES T0355 208 :SASLEEIEEIGA 1q7zA 366 :QIDVRYVEKIVQ T0355 220 :ATHLPLLVG 1q7zA 382 :VSNVPLSLD T0355 229 :SGVNEGNIVEILKR 1q7zA 413 :AKVDEEELEMKINL T0355 243 :TSGVIVASS 1q7zA 431 :GGTLIVLLM T0355 254 :EGGVWW 1q7zA 440 :GKDVPK T0355 263 :ELARVRSFVAAARPGLEALEHH 1q7zA 446 :SFEERKEYFEKALKILERHDFS Number of specific fragments extracted= 18 number of extra gaps= 0 total=789 Number of alignments=48 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1jvnA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1jvnA expands to /projects/compbio/data/pdb/1jvn.pdb.gz 1jvnA:Bad short name: CI for alphabet: pdb_atoms Bad short name: NI for alphabet: pdb_atoms Bad short name: CJ for alphabet: pdb_atoms Bad short name: OJ1 for alphabet: pdb_atoms Bad short name: OJ2 for alphabet: pdb_atoms Bad short name: CF for alphabet: pdb_atoms Bad short name: OF for alphabet: pdb_atoms Bad short name: NX for alphabet: pdb_atoms # T0355 read from 1jvnA/merged-good-all-a2m # 1jvnA read from 1jvnA/merged-good-all-a2m # adding 1jvnA to template set # found chain 1jvnA in template set Warning: unaligning (T0355)Y46 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jvnA)L276 Warning: unaligning (T0355)G70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1jvnA)D304 Warning: unaligning (T0355)K76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jvnA)D304 Warning: unaligning (T0355)P77 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1jvnA)P306 Warning: unaligning (T0355)I127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1jvnA)I344 T0355 2 :QTISDNAANAIQEI 1jvnA 214 :PPIPNYSAEEKELL T0355 17 :GRSKA 1jvnA 228 :MNDYS T0355 22 :LIGMIHCPAFPGAP 1jvnA 243 :CLDVRTNDQGDLVV T0355 47 :DACMRDAERLIEGGMHGLIVENH 1jvnA 277 :GKPVQLAQKYYQQGADEVTFLNI T0355 78 :DDIGPET 1jvnA 307 :LKDTPML T0355 103 :VGINVLANAPIPAFAIAKAGGAKF 1jvnA 314 :EVLKQAAKTVFVPLTVGGGIKDIV T0355 128 :RVNQWAN 1jvnA 345 :PALEVAS T0355 136 :YVANEGFMEGRAAEAMRYR 1jvnA 352 :LYFRSGADKVSIGTDAVYA T0355 155 :SLLRAE 1jvnA 389 :TISKAY T0355 164 :VFADSHVK 1jvnA 399 :VVISVDPK T0355 172 :HGAHAITADR 1jvnA 411 :NSQADTKNKV T0355 183 :IDELTR 1jvnA 451 :VWELTR T0355 189 :DLAFFDADGVI 1jvnA 462 :GAGEILLNCID T0355 202 :GQRTGNSASLEEIEEIGAATHLPLLVGSGV 1jvnA 473 :KDGSNSGYDLELIEHVKDAVKIPVIASSGA T0355 232 :NEGNIVEILKR 1jvnA 504 :VPEHFEEAFLK T0355 243 :TSGVIVASSLKE 1jvnA 517 :ADACLGAGMFHR T0355 257 :VWWN 1jvnA 529 :GEFT T0355 267 :VRSFVAAARP 1jvnA 533 :VNDVKEYLLE Number of specific fragments extracted= 18 number of extra gaps= 2 total=807 Number of alignments=49 # 1jvnA read from 1jvnA/merged-good-all-a2m # found chain 1jvnA in template set Warning: unaligning (T0355)Y46 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jvnA)L276 Warning: unaligning (T0355)G70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1jvnA)D304 Warning: unaligning (T0355)S75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jvnA)D304 Warning: unaligning (T0355)K76 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1jvnA)P306 Warning: unaligning (T0355)P77 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1jvnA)P306 Warning: unaligning (T0355)I127 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1jvnA)I344 T0355 1 :MQTISDNAANAIQ 1jvnA 216 :IPNYSAEEKELLM T0355 14 :EIFGRSKALIGMIHCPAFPGAPRYRN 1jvnA 232 :SNYGLTRRIIACLDVRTNDQGDLVVT T0355 47 :DACMRDAERLIEGGMHGLIVENH 1jvnA 277 :GKPVQLAQKYYQQGADEVTFLNI T0355 78 :DDIGPE 1jvnA 307 :LKDTPM T0355 102 :PVGINVLANAPIPAFAIAKAGGAKF 1jvnA 313 :LEVLKQAAKTVFVPLTVGGGIKDIV T0355 128 :RVNQWANA 1jvnA 345 :PALEVASL T0355 137 :VANEGFMEGRAAEAM 1jvnA 353 :YFRSGADKVSIGTDA T0355 155 :SLLRAEHIKVFADS 1jvnA 368 :VYAAEKYYELGNRG T0355 169 :HVKHGAHAIT 1jvnA 407 :RVYVNSQADT T0355 183 :IDELTRDLAFFDADGVIAT 1jvnA 451 :VWELTRACEALGAGEILLN T0355 202 :GQRTGN 1jvnA 475 :GSNSGY T0355 210 :SLEEIEEIGAATHLPLLVGSGV 1jvnA 481 :DLELIEHVKDAVKIPVIASSGA T0355 232 :NEGNIVEILKR 1jvnA 504 :VPEHFEEAFLK T0355 243 :TSGVIVASSLKE 1jvnA 517 :ADACLGAGMFHR T0355 256 :GVWW 1jvnA 529 :GEFT T0355 267 :VRSFVAAARP 1jvnA 533 :VNDVKEYLLE Number of specific fragments extracted= 16 number of extra gaps= 1 total=823 Number of alignments=50 # 1jvnA read from 1jvnA/merged-good-all-a2m # found chain 1jvnA in template set Warning: unaligning (T0355)S41 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1jvnA)L276 Warning: unaligning (T0355)G70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1jvnA)D304 Warning: unaligning (T0355)F74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1jvnA)D304 Warning: unaligning (T0355)S75 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1jvnA)P306 Warning: unaligning (T0355)K76 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1jvnA)P306 T0355 1 :MQTISDNAANAI 1jvnA 216 :IPNYSAEEKELL T0355 14 :EIFGRSKALIGMIHCPAFP 1jvnA 232 :SNYGLTRRIIACLDVRTND T0355 33 :GAPRYRNA 1jvnA 252 :GDLVVTKG T0355 48 :ACMRDAERLIEGGMHGLIVENH 1jvnA 278 :KPVQLAQKYYQQGADEVTFLNI T0355 77 :PDDI 1jvnA 307 :LKDT T0355 87 :FMSVVTDRIVRTAGVPVGIN 1jvnA 311 :PMLEVLKQAAKTVFVPLTVG T0355 111 :APIPAFAIAKAGGAKFIRVN 1jvnA 345 :PALEVASLYFRSGADKVSIG T0355 145 :GRAAEAMRYRSLLR 1jvnA 365 :TDAVYAAEKYYELG T0355 164 :VFADSHVKH 1jvnA 399 :VVISVDPKR T0355 174 :AHAITADRS 1jvnA 418 :NKVFETEYP T0355 183 :IDELTRDLAFFDADGVIATGQRTGNSAS 1jvnA 451 :VWELTRACEALGAGEILLNCIDKDGSNS T0355 211 :LEEIEEIGAATHLPLLVGSGV 1jvnA 482 :LELIEHVKDAVKIPVIASSGA T0355 232 :NEGNIVEILKR 1jvnA 504 :VPEHFEEAFLK T0355 243 :TSGVIVASSLKEGGVW 1jvnA 517 :ADACLGAGMFHRGEFT T0355 267 :VRSFVAAARP 1jvnA 533 :VNDVKEYLLE Number of specific fragments extracted= 15 number of extra gaps= 0 total=838 Number of alignments=51 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tjpA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0355/1tjpA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0355/1tjpA/merged-good-all-a2m.gz for input Trying 1tjpA/merged-good-all-a2m Error: Couldn't open file 1tjpA/merged-good-all-a2m or 1tjpA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 2tysA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2tysA expands to /projects/compbio/data/pdb/2tys.pdb.gz 2tysA:# T0355 read from 2tysA/merged-good-all-a2m # 2tysA read from 2tysA/merged-good-all-a2m # adding 2tysA to template set # found chain 2tysA in template set Warning: unaligning (T0355)D196 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2tysA)P192 Warning: unaligning (T0355)S210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2tysA)P192 T0355 10 :NAIQEIFGRS 2tysA 5 :ENLFAQLNDR T0355 29 :PAFPGAPRYRNASMD 2tysA 15 :REGAFVPFVTLGDPG T0355 46 :YDACMRDAERLIEGGMHGLIVE 2tysA 30 :IEQSLKIIDTLIDAGADALELG T0355 72 :VPFSKPDDIGPETSAFMSVVTDRIVRTAGVPVGINVLAN 2tysA 52 :VPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIRE T0355 111 :APIPAFAIAKAGGAKF 2tysA 92 :HPTIPIGLLMYANLVF T0355 127 :IRVNQWAN 2tysA 109 :NGIDAFYA T0355 136 :YVANEGFMEGRAAEAM 2tysA 117 :RCEQVGVDSVLVADVP T0355 152 :RYRSLLRAEHIKVFADSHVKHGAHAIT 2tysA 138 :PFRQAALRHNIAPIFICPPNADDDLLR T0355 182 :SIDELTRDLAF 2tysA 165 :QVASYGRGYTY T0355 194 :DA 2tysA 176 :LL T0355 211 :LE 2tysA 193 :LH T0355 213 :EIEEIGAATHLPLLVGSGV 2tysA 196 :LIEKLKEYHAAPALQGFGI T0355 232 :NEGNIVEILKR 2tysA 216 :SPEQVSAAVRA T0355 243 :TSGVIVASSLKEGGVWW 2tysA 228 :AAGAISGSAIVKIIEKN T0355 260 :NPVELARVRSFVAAARPGL 2tysA 248 :PKQMLAELRSFVSAMKAAS Number of specific fragments extracted= 15 number of extra gaps= 0 total=853 Number of alignments=52 # 2tysA read from 2tysA/merged-good-all-a2m # found chain 2tysA in template set Warning: unaligning (T0355)A9 because first residue in template chain is (2tysA)M1 Warning: unaligning (T0355)D196 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2tysA)P192 Warning: unaligning (T0355)S210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2tysA)P192 T0355 10 :NAIQEIF 2tysA 2 :ERYENLF T0355 17 :GRSKALIG 2tysA 14 :RREGAFVP T0355 36 :RYRNASMD 2tysA 22 :FVTLGDPG T0355 46 :YDACMRDAERLIEGGMHGLIVE 2tysA 30 :IEQSLKIIDTLIDAGADALELG T0355 72 :VPFSKPDDIGPETSAFMSVVTDRIVRTAGVPVGINVLAN 2tysA 52 :VPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIRE T0355 111 :APIPAFAIAKAGGAKF 2tysA 92 :HPTIPIGLLMYANLVF T0355 127 :IRVNQWANA 2tysA 109 :NGIDAFYAR T0355 137 :VANEGFMEGRAAEAM 2tysA 118 :CEQVGVDSVLVADVP T0355 152 :RYRSLLRAEHIKVFADSHVKHGA 2tysA 134 :EESAPFRQAALRHNIAPIFICPP T0355 177 :ITADRSIDELTRDLAFFDA 2tysA 157 :NADDDLLRQVASYGRGYTY T0355 211 :L 2tysA 193 :L T0355 212 :EEIEEIGAATHLPLLVGSGV 2tysA 195 :HLIEKLKEYHAAPALQGFGI T0355 232 :NEGNIVEILKR 2tysA 216 :SPEQVSAAVRA T0355 243 :TSGVIVASSLKE 2tysA 228 :AAGAISGSAIVK T0355 255 :GG 2tysA 244 :NL T0355 258 :WWNPVELARVRSFVAAARPGLE 2tysA 246 :ASPKQMLAELRSFVSAMKAASR Number of specific fragments extracted= 16 number of extra gaps= 0 total=869 Number of alignments=53 # 2tysA read from 2tysA/merged-good-all-a2m # found chain 2tysA in template set Warning: unaligning (T0355)S210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2tysA)P192 T0355 6 :DNAANAIQEIFGRSKALIGMIHCPAFP 2tysA 2 :ERYENLFAQLNDRREGAFVPFVTLGDP T0355 39 :N 2tysA 29 :G T0355 46 :YDACMRDAERLIEGGMHGLIVEN 2tysA 30 :IEQSLKIIDTLIDAGADALELGV T0355 73 :PFSKPDDIGPETSAFMS 2tysA 53 :PFSDPLADGPTIQNANL T0355 90 :VVTDRIVRTA 2tysA 83 :EMLALIREKH T0355 100 :GVPVGINVLANAPI 2tysA 94 :TIPIGLLMYANLVF T0355 114 :PAFAIAKAGGAKFIRVN 2tysA 113 :AFYARCEQVGVDSVLVA T0355 141 :GFMEGRAAEAMRYRSLLRAEHIKVF 2tysA 130 :DVPVEESAPFRQAALRHNIAPIFIC T0355 178 :TADRSIDELTRDLAFFDADGVI 2tysA 155 :PPNADDDLLRQVASYGRGYTYL T0355 211 :L 2tysA 193 :L T0355 212 :EEIEEIGAATHLPLLVGSGV 2tysA 195 :HLIEKLKEYHAAPALQGFGI T0355 232 :NEGNIVEILKR 2tysA 216 :SPEQVSAAVRA T0355 243 :TSGVIVASSL 2tysA 228 :AAGAISGSAI T0355 263 :ELA 2tysA 247 :SPK T0355 269 :SFVAAARPGLEALEHH 2tysA 250 :QMLAELRSFVSAMKAA Number of specific fragments extracted= 15 number of extra gaps= 0 total=884 Number of alignments=54 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1geqA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1geqA expands to /projects/compbio/data/pdb/1geq.pdb.gz 1geqA:# T0355 read from 1geqA/merged-good-all-a2m # 1geqA read from 1geqA/merged-good-all-a2m # adding 1geqA to template set # found chain 1geqA in template set Warning: unaligning (T0355)V198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1geqA)E174 Warning: unaligning (T0355)G206 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1geqA)E174 T0355 28 :CPAFPGAPRYRNASMD 1geqA 2 :FKDGSLIPYLTAGDPD T0355 46 :YDACMRDAERL 1geqA 18 :KQSTLNFLLAL T0355 61 :MHGLIVE 1geqA 32 :AGAIELG T0355 72 :VPFSKPDDIGPETSAFMSVVTDRIVRTAGVPVGINVLANAPIPAFAIAKAGGAKF 1geqA 39 :IPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIY T0355 127 :IRVNQWAN 1geqA 95 :AGVRNFLA T0355 136 :YVANEGFMEGRAAEAMRYR 1geqA 103 :EAKASGVDGILVVDLPVFH T0355 155 :SLLRAEHIKVFADSHVKHGAHAIT 1geqA 127 :EIAREEGIKTVFLAAPNTPDERLK T0355 182 :SIDELTRDLAF 1geqA 151 :VIDDMTTGFVY T0355 194 :DADG 1geqA 162 :LVSL T0355 207 :NSASL 1geqA 175 :IPKTA T0355 212 :EEIEEIGAATHLPLLVGSGV 1geqA 181 :DLLRRAKRICRNKVAVGFGV T0355 232 :NEGNIVEILKR 1geqA 202 :KREHVVSLLKE T0355 243 :TSGVIVASSLKEGGVWWNPVELARVRSFVAAA 1geqA 214 :ANGVVVGSALVKIIGEKGREATEFLKKKVEEL Number of specific fragments extracted= 13 number of extra gaps= 0 total=897 Number of alignments=55 # 1geqA read from 1geqA/merged-good-all-a2m # found chain 1geqA in template set Warning: unaligning (T0355)V198 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1geqA)E174 Warning: unaligning (T0355)G206 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1geqA)E174 T0355 28 :CPAFPGAPRYRNASMD 1geqA 2 :FKDGSLIPYLTAGDPD T0355 46 :YDACMRDAERLIEG 1geqA 18 :KQSTLNFLLALDEY T0355 61 :MHGLIVE 1geqA 32 :AGAIELG T0355 72 :VPFSKPDDIGPETSAFMSVVTDRIVRTAGVPVGINVLANAPIPAFAIAKAGGAKF 1geqA 39 :IPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIY T0355 127 :IRVNQWANA 1geqA 95 :AGVRNFLAE T0355 137 :VANEGFMEGRAAEAM 1geqA 104 :AKASGVDGILVVDLP T0355 152 :RYRSLLRAEHIKVFADSHVKHGA 1geqA 120 :FHAKEFTEIAREEGIKTVFLAAP T0355 177 :ITADRSIDELTRDLAFFDA 1geqA 143 :NTPDERLKVIDDMTTGFVY T0355 196 :DG 1geqA 164 :SL T0355 207 :NSASL 1geqA 175 :IPKTA T0355 212 :EEIEEIGAATHLPLLVGSGV 1geqA 181 :DLLRRAKRICRNKVAVGFGV T0355 232 :NEGNIVEILKR 1geqA 202 :KREHVVSLLKE T0355 243 :TSGVIVASSLKE 1geqA 214 :ANGVVVGSALVK T0355 255 :GGVWWNPVELARVRSFV 1geqA 230 :KGREATEFLKKKVEELL Number of specific fragments extracted= 14 number of extra gaps= 0 total=911 Number of alignments=56 # 1geqA read from 1geqA/merged-good-all-a2m # found chain 1geqA in template set Warning: unaligning (T0355)Q203 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1geqA)E174 Warning: unaligning (T0355)S210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1geqA)E174 T0355 6 :DNAANAIQEIFGRSKALIGMIHC 1geqA 19 :QSTLNFLLALDEYAGAIELGIPF T0355 32 :PGAPRYRN 1geqA 42 :SDPIADGK T0355 48 :ACMRDAERLIEGG 1geqA 50 :TIQESHYRALKNG T0355 80 :IGPETSA 1geqA 63 :FKLREAF T0355 90 :VVTDRIVRTAGVPVGINVLANAPIPA 1geqA 70 :WIVKEFRRHSSTPIVLMTYYNPIYRA T0355 116 :FAIAKAGGAKFIRV 1geqA 101 :LAEAKASGVDGILV T0355 140 :EGFMEGRAAEAMRYRSLLR 1geqA 115 :VDLPVFHAKEFTEIAREEG T0355 162 :IKVFADSH 1geqA 134 :IKTVFLAA T0355 179 :ADRSIDELTRDLAFFDADGVIATG 1geqA 142 :PNTPDERLKVIDDMTTGFVYLVSL T0355 211 :LEEIEEIGAATHLPLLVGSGV 1geqA 180 :YDLLRRAKRICRNKVAVGFGV T0355 232 :NEGNIVEILKR 1geqA 202 :KREHVVSLLKE T0355 243 :TSGVIVASSL 1geqA 214 :ANGVVVGSAL T0355 267 :VRSFVAA 1geqA 224 :VKIIGEK T0355 274 :ARPGLEAL 1geqA 238 :LKKKVEEL Number of specific fragments extracted= 14 number of extra gaps= 0 total=925 Number of alignments=57 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1thfD/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0355 read from 1thfD/merged-good-all-a2m # 1thfD read from 1thfD/merged-good-all-a2m # found chain 1thfD in training set T0355 39 :NAS 1thfD 29 :SGD T0355 49 :CMRDAERLIEGGMH 1thfD 32 :PVELGKFYSEIGID T0355 63 :GLIVE 1thfD 47 :LVFLD T0355 70 :G 1thfD 52 :I T0355 75 :SKPDDIGPETSAF 1thfD 53 :TASVEKRKTMLEL T0355 105 :INVLANAPIPAFAIAKAGG 1thfD 66 :VEKVAEQIDIPFTVGGGIH T0355 128 :RVNQ 1thfD 85 :DFET T0355 133 :AN 1thfD 89 :AS T0355 136 :YVANEGFMEGRAAEA 1thfD 91 :ELILRGADKVSINTA T0355 152 :RYR 1thfD 106 :AVE T0355 155 :SLLRAEHIKVFADS 1thfD 115 :QIAQTFGSQAVVVA T0355 174 :AHAIT 1thfD 154 :RDWVV T0355 182 :SIDEL 1thfD 159 :EVEKR T0355 189 :DLAFFDADGVI 1thfD 164 :GAGEILLTSID T0355 202 :GQRTGNSASLEEIEEIGAATHLPLLVGSGV 1thfD 175 :RDGTKSGYDTEMIRFVRPLTTLPIIASGGA T0355 232 :NEGNIVEILKR 1thfD 206 :KMEHFLEAFLA T0355 243 :TSGVIVASSLKEGG 1thfD 218 :ADAALAASVFHFRE T0355 259 :WN 1thfD 232 :ID T0355 267 :VRSFVAAARP 1thfD 234 :VRELKEYLKK Number of specific fragments extracted= 19 number of extra gaps= 0 total=944 Number of alignments=58 # 1thfD read from 1thfD/merged-good-all-a2m # found chain 1thfD in training set Warning: unaligning (T0355)G17 because first residue in template chain is (1thfD)M1 T0355 18 :RSKALIGMIHCPAFPGAPRYRN 1thfD 2 :LAKRIIACLDVKDGRVVKGSNF T0355 40 :AS 1thfD 27 :RD T0355 46 :YDACMRDAERLIEGGMHGLIV 1thfD 29 :SGDPVELGKFYSEIGIDELVF T0355 70 :GDVPFSKP 1thfD 50 :LDITASVE T0355 97 :RTAGVPVGINVLANAPIPAFAIAKAGGA 1thfD 58 :KRKTMLELVEKVAEQIDIPFTVGGGIHD T0355 130 :NQWANA 1thfD 86 :FETASE T0355 137 :VANEGFMEGRAAEAM 1thfD 92 :LILRGADKVSINTAA T0355 152 :RYRSLLRAEHIKVFADS 1thfD 108 :ENPSLITQIAQTFGSQA T0355 183 :IDELTRDLAFFDADGVIAT 1thfD 153 :LRDWVVEVEKRGAGEILLT T0355 202 :GQRTGN 1thfD 177 :GTKSGY T0355 210 :SLEEIEEIGAATHLPLLVGSGV 1thfD 183 :DTEMIRFVRPLTTLPIIASGGA T0355 232 :NEGNIVEILKR 1thfD 206 :KMEHFLEAFLA T0355 243 :TSGVIVASSLKEGGVW 1thfD 218 :ADAALAASVFHFREID T0355 267 :VRSFVAAARPG 1thfD 234 :VRELKEYLKKH Number of specific fragments extracted= 14 number of extra gaps= 0 total=958 Number of alignments=59 # 1thfD read from 1thfD/merged-good-all-a2m # found chain 1thfD in training set T0355 18 :RSKALIGMIHC 1thfD 2 :LAKRIIACLDV T0355 29 :PAFPGAPRYRN 1thfD 21 :SNFENLRDSGD T0355 49 :CMRDAERLIEGGMHGLIVENHG 1thfD 32 :PVELGKFYSEIGIDELVFLDIT T0355 80 :IGPETSAFMSVVTDRIVRTAGVPVGINVLANAPIPAFAIAK 1thfD 54 :ASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELIL T0355 122 :GGAKFIRVNQWAN 1thfD 95 :RGADKVSINTAAV T0355 145 :GRAAEAMRYRSLLRAEHIKVFADSHVKHGAH 1thfD 108 :ENPSLITQIAQTFGSQAVVVAIDAKRVDGEF T0355 178 :TADRSIDELTRDLAFFDADGVIATGQRTGNSAS 1thfD 148 :NTGILLRDWVVEVEKRGAGEILLTSIDRDGTKS T0355 211 :LEEIEEIGAATHLPLLVGSGV 1thfD 184 :TEMIRFVRPLTTLPIIASGGA T0355 232 :NEGNIVEILKR 1thfD 206 :KMEHFLEAFLA T0355 243 :TSGVIVASSLKEG 1thfD 218 :ADAALAASVFHFR T0355 261 :PVE 1thfD 231 :EID T0355 267 :VRSFVAAARP 1thfD 234 :VRELKEYLKK Number of specific fragments extracted= 12 number of extra gaps= 0 total=970 Number of alignments=60 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tjrA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0355/1tjrA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0355/1tjrA/merged-good-all-a2m.gz for input Trying 1tjrA/merged-good-all-a2m Error: Couldn't open file 1tjrA/merged-good-all-a2m or 1tjrA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1beuA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0355/1beuA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0355/1beuA/merged-good-all-a2m.gz for input Trying 1beuA/merged-good-all-a2m Error: Couldn't open file 1beuA/merged-good-all-a2m or 1beuA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qopA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0355 read from 1qopA/merged-good-all-a2m # 1qopA read from 1qopA/merged-good-all-a2m # found chain 1qopA in training set Warning: unaligning (T0355)N207 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qopA)P192 Warning: unaligning (T0355)S210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qopA)P192 Warning: unaligning (T0355)G228 because of BadResidue code BAD_PEPTIDE in next template residue (1qopA)F212 Warning: unaligning (T0355)S229 because of BadResidue code BAD_PEPTIDE at template residue (1qopA)F212 T0355 10 :NAIQEIFGR 1qopA 5 :ENLFAQLND T0355 28 :CPAFPGAPRYRNASMD 1qopA 14 :RREGAFVPFVTLGDPG T0355 46 :YDACMRDAERLIEGGMHGLIVE 1qopA 30 :IEQSLKIIDTLIDAGADALELG T0355 72 :VPFSKPDDIGPETSAFMSVVTDRIVRTAGVPVGINVLAN 1qopA 52 :VPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIRE T0355 111 :APIPAFAIAKAGGAKF 1qopA 92 :HPTIPIGLLMYANLVF T0355 127 :IRVNQWAN 1qopA 109 :NGIDAFYA T0355 136 :YVANEGFMEGRAAEAMRYR 1qopA 117 :RCEQVGVDSVLVADVPVEE T0355 155 :SLLRAEHIKVFADSHVKHGAHAIT 1qopA 141 :QAALRHNIAPIFICPPNADDDLLR T0355 182 :SIDELTRDLAF 1qopA 165 :QVASYGRGYTY T0355 194 :DADGVIATGQRTG 1qopA 176 :LLSRSGVTGAENR T0355 211 :L 1qopA 193 :L T0355 212 :EEIEEIGAATHLPLLV 1qopA 195 :HLIEKLKEYHAAPALQ T0355 230 :GV 1qopA 213 :GI T0355 232 :NEGNIVEILKR 1qopA 216 :SPEQVSAAVRA T0355 243 :TSGVIVASSLKEGGVWW 1qopA 228 :AAGAISGSAIVKIIEKN T0355 260 :NPVELARVRSFVAAARPG 1qopA 248 :PKQMLAELRSFVSAMKAA Number of specific fragments extracted= 16 number of extra gaps= 1 total=986 Number of alignments=61 # 1qopA read from 1qopA/merged-good-all-a2m # found chain 1qopA in training set Warning: unaligning (T0355)A9 because first residue in template chain is (1qopA)M1 Warning: unaligning (T0355)N207 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1qopA)P192 Warning: unaligning (T0355)S210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1qopA)P192 Warning: unaligning (T0355)G228 because of BadResidue code BAD_PEPTIDE in next template residue (1qopA)F212 Warning: unaligning (T0355)S229 because of BadResidue code BAD_PEPTIDE at template residue (1qopA)F212 T0355 10 :NAIQEIFG 1qopA 2 :ERYENLFA T0355 18 :RSKALIGMIHCPAFP 1qopA 15 :REGAFVPFVTLGDPG T0355 46 :YDACMRDAERLIEGGMHGLIVE 1qopA 30 :IEQSLKIIDTLIDAGADALELG T0355 72 :VPFSKPDDIGPETSAFMSVVTDRIVRTAGVPVGINVLAN 1qopA 52 :VPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIRE T0355 111 :APIPAFAIAKAGGAKF 1qopA 92 :HPTIPIGLLMYANLVF T0355 127 :IRVNQWANA 1qopA 109 :NGIDAFYAR T0355 137 :VANEGFMEGRAAEAM 1qopA 118 :CEQVGVDSVLVADVP T0355 152 :RYRSLLRAEHIKVFADSHVKHGA 1qopA 134 :EESAPFRQAALRHNIAPIFICPP T0355 177 :ITADRSIDELTRDLAFFDA 1qopA 157 :NADDDLLRQVASYGRGYTY T0355 196 :DGVIATGQRTG 1qopA 178 :SRSGVTGAENR T0355 211 :L 1qopA 193 :L T0355 212 :EEIEEIGAATHLPLLV 1qopA 195 :HLIEKLKEYHAAPALQ T0355 230 :GV 1qopA 213 :GI T0355 232 :NEGNIVEILKR 1qopA 216 :SPEQVSAAVRA T0355 243 :TSGVIVASSLKE 1qopA 228 :AAGAISGSAIVK T0355 255 :GGVW 1qopA 244 :NLAS T0355 260 :NPVELARVRSFVAAARPG 1qopA 248 :PKQMLAELRSFVSAMKAA Number of specific fragments extracted= 17 number of extra gaps= 1 total=1003 Number of alignments=62 # 1qopA read from 1qopA/merged-good-all-a2m # found chain 1qopA in training set Warning: unaligning (T0355)G228 because of BadResidue code BAD_PEPTIDE in next template residue (1qopA)F212 Warning: unaligning (T0355)S229 because of BadResidue code BAD_PEPTIDE at template residue (1qopA)F212 T0355 7 :NAANAIQEIFGRSKALIGMIHCPAFPG 1qopA 3 :RYENLFAQLNDRREGAFVPFVTLGDPG T0355 46 :YDACMRDAERLIEGGMHGLIVENHGDVP 1qopA 30 :IEQSLKIIDTLIDAGADALELGVPFSDP T0355 78 :DDIGPETSAFMS 1qopA 58 :LADGPTIQNANL T0355 90 :VVTDRIVRTA 1qopA 83 :EMLAIIREKH T0355 100 :GVPVGINVLANAPI 1qopA 94 :TIPIGLLMYANLVF T0355 114 :PAFAIAKAGGAKFIRV 1qopA 113 :AFYARCEQVGVDSVLV T0355 140 :EGFMEGRAAEAMRYRSLLRAEHIKVF 1qopA 129 :ADVPVEESAPFRQAALRHNIAPIFIC T0355 178 :TADRSIDELTRDLAFFDADGVIATGQ 1qopA 155 :PPNADDDLLRQVASYGRGYTYLLSRS T0355 204 :RTGNSAS 1qopA 182 :VTGAENR T0355 211 :LEEIEEIGAATHLPLLV 1qopA 194 :HHLIEKLKEYHAAPALQ T0355 230 :GV 1qopA 213 :GI T0355 232 :NEGNIVEILKR 1qopA 216 :SPEQVSAAVRA T0355 243 :TSGVIVASSL 1qopA 228 :AAGAISGSAI T0355 263 :ELA 1qopA 247 :SPK T0355 269 :SFVAAARPGLEALEH 1qopA 250 :QMLAELRSFVSAMKA Number of specific fragments extracted= 15 number of extra gaps= 1 total=1018 Number of alignments=63 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1bksA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1bksA expands to /projects/compbio/data/pdb/1bks.pdb.gz 1bksA:Skipped atom 759, because occupancy 0.500 <= existing 0.500 in 1bksA Skipped atom 761, because occupancy 0.500 <= existing 0.500 in 1bksA Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 1bksA Skipped atom 765, because occupancy 0.500 <= existing 0.500 in 1bksA # T0355 read from 1bksA/merged-good-all-a2m # 1bksA read from 1bksA/merged-good-all-a2m # adding 1bksA to template set # found chain 1bksA in template set Warning: unaligning (T0355)A195 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1bksA)A190 Warning: unaligning (T0355)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1bksA)A190 Warning: unaligning (T0355)V248 because of BadResidue code BAD_PEPTIDE in next template residue (1bksA)G234 Warning: unaligning (T0355)A249 because of BadResidue code BAD_PEPTIDE at template residue (1bksA)G234 T0355 10 :NAIQEIFGRS 1bksA 5 :ENLFAQLNDR T0355 29 :PAFPGAPRYRNASMD 1bksA 15 :REGAFVPFVTLGDPG T0355 46 :YDACMRDAERLIEGGMHGLIVE 1bksA 30 :IEQSLKIIDTLIDAGADALELG T0355 72 :VPFSKPDDIGPETSAFMSVVTDRIVRTAGVPVGINVLAN 1bksA 52 :VPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIRE T0355 111 :APIPAFAIAKAGGAKF 1bksA 92 :HPTIPIGLLMYANLVF T0355 127 :IRVNQWAN 1bksA 109 :NGIDAFYA T0355 136 :YVANEGFMEGRAAEAM 1bksA 117 :RCEQVGVDSVLVADVP T0355 152 :RYRSLLRAEHIKVFADSHVKHGAHAIT 1bksA 138 :PFRQAALRHNIAPIFICPPNADDDLLR T0355 182 :SIDELTRDLAF 1bksA 165 :QVASYGRGYTY T0355 194 :D 1bksA 176 :L T0355 209 :ASLE 1bksA 191 :LPLH T0355 213 :EIEEIGAATHLPLLVGSGV 1bksA 196 :LIEKLKEYHAAPALQGFGI T0355 232 :NEGNIVEILKR 1bksA 216 :SPEQVSAAVRA T0355 243 :TSGVI 1bksA 228 :AAGAI T0355 250 :SSLKEGGVWW 1bksA 235 :SAIVKIIEKN T0355 260 :NPVELARVRSFVAAARPG 1bksA 248 :PKQMLAELRSFVSAMKAA Number of specific fragments extracted= 16 number of extra gaps= 1 total=1034 Number of alignments=64 # 1bksA read from 1bksA/merged-good-all-a2m # found chain 1bksA in template set Warning: unaligning (T0355)A9 because first residue in template chain is (1bksA)M1 Warning: unaligning (T0355)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1bksA)A190 Warning: unaligning (T0355)V248 because of BadResidue code BAD_PEPTIDE in next template residue (1bksA)G234 Warning: unaligning (T0355)A249 because of BadResidue code BAD_PEPTIDE at template residue (1bksA)G234 T0355 10 :NAIQEIFG 1bksA 2 :ERYENLFA T0355 18 :RSKALIGMIHCPAFP 1bksA 15 :REGAFVPFVTLGDPG T0355 46 :YDACMRDAERLIEGGMHGLIVE 1bksA 30 :IEQSLKIIDTLIDAGADALELG T0355 72 :VPFSKPDDIGPETSAFMSVVTDRIVRTAGVPVGINVLAN 1bksA 52 :VPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIRE T0355 111 :APIPAFAIAKAGGAKF 1bksA 92 :HPTIPIGLLMYANLVF T0355 127 :IRVNQWANA 1bksA 109 :NGIDAFYAR T0355 137 :VANEGFMEGRAAEAM 1bksA 118 :CEQVGVDSVLVADVP T0355 152 :RYRSLLRAEHIKVFADSHVKHGA 1bksA 134 :EESAPFRQAALRHNIAPIFICPP T0355 177 :ITADRSIDELTRDLAFFDA 1bksA 157 :NADDDLLRQVASYGRGYTY T0355 209 :ASL 1bksA 191 :LPL T0355 212 :EEIEEIGAATHLPLLVGSGV 1bksA 195 :HLIEKLKEYHAAPALQGFGI T0355 232 :NEGNIVEILKR 1bksA 216 :SPEQVSAAVRA T0355 243 :TSGVI 1bksA 228 :AAGAI T0355 250 :SSLKE 1bksA 235 :SAIVK T0355 255 :GGV 1bksA 244 :NLA T0355 259 :WNPVELARVRSFVAAARPG 1bksA 247 :SPKQMLAELRSFVSAMKAA Number of specific fragments extracted= 16 number of extra gaps= 1 total=1050 Number of alignments=65 # 1bksA read from 1bksA/merged-good-all-a2m # found chain 1bksA in template set Warning: unaligning (T0355)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1bksA)A190 Warning: unaligning (T0355)V248 because of BadResidue code BAD_PEPTIDE in next template residue (1bksA)G234 Warning: unaligning (T0355)A249 because of BadResidue code BAD_PEPTIDE at template residue (1bksA)G234 T0355 6 :DNAANAIQEIFGRSK 1bksA 2 :ERYENLFAQLNDRRE T0355 21 :ALIGMIHCP 1bksA 18 :AFVPFVTLG T0355 39 :NASMDA 1bksA 27 :DPGIEQ T0355 49 :CMRDAERLIEGGMHGLIVEN 1bksA 33 :SLKIIDTLIDAGADALELGV T0355 73 :PFSKPDDIGPETSAFMS 1bksA 53 :PFSDPLADGPTIQNANL T0355 90 :VVTDRIVRTA 1bksA 83 :EMLALIREKH T0355 100 :GVPVGINVLANAPI 1bksA 94 :TIPIGLLMYANLVF T0355 114 :PAFAIAKAGGAKFIRV 1bksA 113 :AFYARCEQVGVDSVLV T0355 140 :EGFMEGRAAEAMRYRSLLRAEHIKVF 1bksA 129 :ADVPVEESAPFRQAALRHNIAPIFIC T0355 178 :TADRSIDELTRDLAFFDADGVI 1bksA 155 :PPNADDDLLRQVASYGRGYTYL T0355 209 :ASLE 1bksA 191 :LPLH T0355 213 :EIEEIGAATHLPLLVGSGV 1bksA 196 :LIEKLKEYHAAPALQGFGI T0355 232 :NEGNIVEILKR 1bksA 216 :SPEQVSAAVRA T0355 243 :TSGVI 1bksA 228 :AAGAI T0355 250 :SSL 1bksA 235 :SAI T0355 263 :ELA 1bksA 247 :SPK T0355 266 :RVR 1bksA 251 :MLA T0355 273 :AARPGLEALE 1bksA 254 :ELRSFVSAMK Number of specific fragments extracted= 18 number of extra gaps= 1 total=1068 Number of alignments=66 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tx2A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1tx2A expands to /projects/compbio/data/pdb/1tx2.pdb.gz 1tx2A:# T0355 read from 1tx2A/merged-good-all-a2m # 1tx2A read from 1tx2A/merged-good-all-a2m # adding 1tx2A to template set # found chain 1tx2A in template set Warning: unaligning (T0355)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tx2A)V28 Warning: unaligning (T0355)A40 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tx2A)V28 Warning: unaligning (T0355)G70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tx2A)F71 Warning: unaligning (T0355)S75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tx2A)F71 T0355 24 :GMIHCPAFPGAPRYR 1tx2A 12 :YTLNLNEKTLIMGIL T0355 41 :SM 1tx2A 29 :TP T0355 43 :DAIYDACMRDAERLIEGGMHGLIVENH 1tx2A 39 :YNEVDAAVRHAKEMRDEGAHIIDIGGE T0355 76 :KPDDI 1tx2A 72 :AKVSV T0355 82 :PETSAFMS 1tx2A 77 :EEEIKRVV T0355 103 :VGINVLANAPIPAFAI 1tx2A 85 :PMIQAVSKEVKLPISI T0355 119 :AKAGGAKF 1tx2A 111 :AIEAGAHI T0355 127 :IR 1tx2A 120 :ND T0355 129 :VNQWAN 1tx2A 128 :EPKIAE T0355 136 :YVANEGFMEGRAAEAM 1tx2A 134 :VAAHYDVPIILMHNRD T0355 155 :SLLRAEHIK 1tx2A 169 :KIAKDAGVR T0355 164 :VFADSH 1tx2A 181 :IILDPG T0355 170 :VKHGAHAIT 1tx2A 189 :FAKTPEQNL T0355 182 :SIDELTRDLAFFDADGVIATGQRT 1tx2A 198 :EAMRNLEQLNVLGYPVLLGTSRKS T0355 206 :GNSASLEEIEEI 1tx2A 230 :PVEERLEGTGAT T0355 236 :IVEILKR 1tx2A 242 :VCLGIEK T0355 243 :TSGVIV 1tx2A 250 :CEFVRV T0355 267 :VRSFVAAARPGLEAL 1tx2A 258 :VKEMSRMAKMMDAMI Number of specific fragments extracted= 18 number of extra gaps= 1 total=1086 Number of alignments=67 # 1tx2A read from 1tx2A/merged-good-all-a2m # found chain 1tx2A in template set Warning: unaligning (T0355)H27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tx2A)V28 Warning: unaligning (T0355)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tx2A)V28 Warning: unaligning (T0355)P35 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tx2A)G36 Warning: unaligning (T0355)R36 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tx2A)G36 Warning: unaligning (T0355)G70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tx2A)F71 Warning: unaligning (T0355)S75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tx2A)F71 T0355 17 :GRSKALIGMI 1tx2A 17 :NEKTLIMGIL T0355 29 :PAFPGA 1tx2A 29 :TPDSFS T0355 40 :ASMDA 1tx2A 37 :GSYNE T0355 46 :YDACMRDAERLIEGGMHGLIVENH 1tx2A 42 :VDAAVRHAKEMRDEGAHIIDIGGE T0355 76 :KPDDIGPETSAFM 1tx2A 72 :AKVSVEEEIKRVV T0355 103 :VGINVLANAPIPAFAIAKA 1tx2A 85 :PMIQAVSKEVKLPISIDTY T0355 128 :R 1tx2A 104 :K T0355 130 :NQWANA 1tx2A 105 :AEVAKQ T0355 137 :VANEGFMEGRA 1tx2A 111 :AIEAGAHIIND T0355 148 :AEAM 1tx2A 126 :KAEP T0355 156 :LLRAEHIKVFADSHVKHGAHAIT 1tx2A 130 :KIAEVAAHYDVPIILMHNRDNMN T0355 180 :DRSIDELTRDLAFFDA 1tx2A 161 :IADLYDSIKIAKDAGV T0355 196 :DGVIAT 1tx2A 179 :ENIILD T0355 203 :QRTGNSASLEEIEEIGAAT 1tx2A 185 :PGIGFAKTPEQNLEAMRNL T0355 222 :HLPLLVG 1tx2A 210 :GYPVLLG T0355 233 :EGNIVEILKR 1tx2A 239 :GATVCLGIEK T0355 243 :TSGVIV 1tx2A 250 :CEFVRV T0355 255 :G 1tx2A 257 :D T0355 267 :VRSFVAAARPGLEAL 1tx2A 258 :VKEMSRMAKMMDAMI Number of specific fragments extracted= 19 number of extra gaps= 2 total=1105 Number of alignments=68 # 1tx2A read from 1tx2A/merged-good-all-a2m # found chain 1tx2A in template set Warning: unaligning (T0355)H27 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tx2A)V28 Warning: unaligning (T0355)C28 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tx2A)V28 Warning: unaligning (T0355)R38 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tx2A)G36 Warning: unaligning (T0355)N39 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tx2A)G36 Warning: unaligning (T0355)G70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tx2A)F71 Warning: unaligning (T0355)S75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tx2A)F71 T0355 17 :GRSKALIGMI 1tx2A 17 :NEKTLIMGIL T0355 29 :PA 1tx2A 29 :TP T0355 34 :APRY 1tx2A 31 :DSFS T0355 41 :SMDAIYDACMRDAERLIEGGMHGLIVENH 1tx2A 37 :GSYNEVDAAVRHAKEMRDEGAHIIDIGGE T0355 76 :KP 1tx2A 72 :AK T0355 80 :IGPETSAFMS 1tx2A 74 :VSVEEEIKRV T0355 90 :VVTDRIVRTAGVPVGINVLA 1tx2A 85 :PMIQAVSKEVKLPISIDTYK T0355 113 :IPAFAIAKAGGAKFIRV 1tx2A 105 :AEVAKQAIEAGAHIIND T0355 139 :NEGFMEGRAAEAMRYR 1tx2A 123 :WGAKAEPKIAEVAAHY T0355 161 :HIKVFADSHVKHGAH 1tx2A 139 :DVPIILMHNRDNMNY T0355 179 :AD 1tx2A 154 :RN T0355 183 :IDELTRDLAFFDA 1tx2A 164 :LYDSIKIAKDAGV T0355 196 :DGVIATG 1tx2A 180 :NIILDPG T0355 205 :TGNSASLEEIEEIGA 1tx2A 187 :IGFAKTPEQNLEAMR T0355 220 :ATHLPLLVGS 1tx2A 208 :VLGYPVLLGT T0355 233 :EGNIVEILKR 1tx2A 235 :LEGTGATVCL T0355 243 :TSGVIVAS 1tx2A 250 :CEFVRVHD T0355 267 :VRSFVAAARPGLEALE 1tx2A 258 :VKEMSRMAKMMDAMIG Number of specific fragments extracted= 18 number of extra gaps= 2 total=1123 Number of alignments=69 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xcfA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0355/1xcfA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0355/1xcfA/merged-good-all-a2m.gz for input Trying 1xcfA/merged-good-all-a2m Error: Couldn't open file 1xcfA/merged-good-all-a2m or 1xcfA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ojxA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ojxA expands to /projects/compbio/data/pdb/1ojx.pdb.gz 1ojxA:# T0355 read from 1ojxA/merged-good-all-a2m # 1ojxA read from 1ojxA/merged-good-all-a2m # adding 1ojxA to template set # found chain 1ojxA in template set Warning: unaligning (T0355)R275 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ojxA)G253 Warning: unaligning (T0355)P276 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ojxA)G253 T0355 8 :AANAIQEIFGRSK 1ojxA 4 :LTEKFLRIFARRG T0355 34 :APRYRNASM 1ojxA 17 :KSIILAYDH T0355 46 :YDACMRDAER 1ojxA 43 :PEYILRLARD T0355 59 :GGMHGLIVE 1ojxA 53 :AGFDGVVFQ T0355 102 :PVGINVLANAPIPAFAIAKAG 1ojxA 62 :RGIAEKYYDGSVPLILKLNGK T0355 124 :AKF 1ojxA 92 :SVA T0355 127 :IRVN 1ojxA 96 :CSVE T0355 136 :YVANEGFMEGRAAEAM 1ojxA 100 :EAVSLGASAVGYTIYP T0355 155 :SLLRAEHIKVFADSHVKHG 1ojxA 132 :RDAVKFDLPLVVWSYPRGG T0355 175 :HAITADR 1ojxA 151 :KVVNETA T0355 182 :SIDELTR 1ojxA 160 :IVAYAAR T0355 189 :DLAFFDADGVI 1ojxA 172 :GADAMKIKYTG T0355 210 :SLEEIEEIGAATH 1ojxA 183 :DPKTFSWAVKVAG T0355 223 :LPLLVGSG 1ojxA 197 :VPVLMSGG T0355 231 :V 1ojxA 207 :T T0355 232 :NEG 1ojxA 209 :TEE T0355 235 :NIVEILKR 1ojxA 216 :QVEGVLEA T0355 243 :TSGVIVASSLKEGGV 1ojxA 225 :ALGIAVGRNVWQRRD T0355 263 :ELARVRSFVAAA 1ojxA 240 :ALKFARALAELV Number of specific fragments extracted= 19 number of extra gaps= 1 total=1142 Number of alignments=70 # 1ojxA read from 1ojxA/merged-good-all-a2m # found chain 1ojxA in template set Warning: unaligning (T0355)N7 because first residue in template chain is (1ojxA)N3 Warning: unaligning (T0355)R275 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1ojxA)G253 Warning: unaligning (T0355)P276 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1ojxA)G253 T0355 8 :AANAIQEIF 1ojxA 4 :LTEKFLRIF T0355 17 :GRSKALIGMIH 1ojxA 14 :RRGKSIILAYD T0355 29 :PAFPG 1ojxA 30 :GPADF T0355 39 :NASMD 1ojxA 35 :MDNPD T0355 44 :AIYDACMRDAE 1ojxA 41 :ADPEYILRLAR T0355 58 :EGGMHGLIVE 1ojxA 52 :DAGFDGVVFQ T0355 102 :PVGINVLANAPIPAFAIAKA 1ojxA 62 :RGIAEKYYDGSVPLILKLNG T0355 124 :AKF 1ojxA 92 :SVA T0355 127 :IRVNQ 1ojxA 96 :CSVEE T0355 137 :VANEGFMEGRAAEA 1ojxA 101 :AVSLGASAVGYTIY T0355 151 :M 1ojxA 123 :M T0355 152 :RYRSLLRAEHIKVFADSHVKHGAH 1ojxA 125 :EELARIKRDAVKFDLPLVVWSYPR T0355 178 :T 1ojxA 149 :G T0355 179 :ADRSIDELTRDLAFFDADGVIAT 1ojxA 157 :APEIVAYAARIALELGADAMKIK T0355 204 :RTG 1ojxA 180 :YTG T0355 210 :SLEEIEEIGAAT 1ojxA 183 :DPKTFSWAVKVA T0355 222 :HLPLLVGSG 1ojxA 196 :KVPVLMSGG T0355 231 :V 1ojxA 207 :T T0355 232 :NEGNIVE 1ojxA 209 :TEEDFLK T0355 239 :ILKR 1ojxA 220 :VLEA T0355 243 :TSGVIVASSLKEG 1ojxA 225 :ALGIAVGRNVWQR T0355 261 :PVELARVRSFVAAA 1ojxA 238 :RDALKFARALAELV Number of specific fragments extracted= 22 number of extra gaps= 1 total=1164 Number of alignments=71 # 1ojxA read from 1ojxA/merged-good-all-a2m # found chain 1ojxA in template set Warning: unaligning (T0355)N7 because first residue in template chain is (1ojxA)N3 T0355 8 :AANAIQEIF 1ojxA 4 :LTEKFLRIF T0355 17 :GRSKALIGMIH 1ojxA 14 :RRGKSIILAYD T0355 29 :PAFPGAPRYR 1ojxA 32 :ADFMDNPDSA T0355 41 :SMDAIYDACMR 1ojxA 42 :DPEYILRLARD T0355 59 :GGMHGLIVE 1ojxA 53 :AGFDGVVFQ T0355 92 :TDRIVRTA 1ojxA 62 :RGIAEKYY T0355 100 :GVPVGINV 1ojxA 72 :SVPLILKL T0355 109 :ANAPI 1ojxA 95 :NCSVE T0355 119 :AKAGGAKFIRVNQWA 1ojxA 101 :AVSLGASAVGYTIYP T0355 139 :NEGFMEGRAAEAMRYRSLLRAEHIKVFADSHVKHGAHAITADRS 1ojxA 116 :GSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPE T0355 183 :IDELTRDLAFFDADGVIAT 1ojxA 161 :VAYAARIALELGADAMKIK T0355 207 :NSASLEEIEEIGA 1ojxA 180 :YTGDPKTFSWAVK T0355 220 :ATHLPLLVGSG 1ojxA 194 :AGKVPVLMSGG T0355 232 :NEGNIVEILKR 1ojxA 209 :TEEDFLKQVEG T0355 243 :TSGVIVASSL 1ojxA 225 :ALGIAVGRNV T0355 253 :KEG 1ojxA 237 :RRD T0355 264 :LARVRSFVAAA 1ojxA 241 :LKFARALAELV Number of specific fragments extracted= 17 number of extra gaps= 0 total=1181 Number of alignments=72 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1y0eA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1y0eA expands to /projects/compbio/data/pdb/1y0e.pdb.gz 1y0eA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0355 read from 1y0eA/merged-good-all-a2m # 1y0eA read from 1y0eA/merged-good-all-a2m # adding 1y0eA to template set # found chain 1y0eA in template set Warning: unaligning (T0355)A150 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y0eA)T96 Warning: unaligning (T0355)M151 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y0eA)T96 T0355 20 :KALIGMIHCPAFPGAP 1y0eA 5 :GLIVSCQALPDEPLHS T0355 46 :YDACMRDAERLIEGGMHGLIVE 1y0eA 21 :SFIMSKMALAAYEGGAVGIRAN T0355 101 :VPVGINVLANAPIPAFAIAKAG 1y0eA 43 :TKEDILAIKETVDLPVIGIVKR T0355 123 :GAKFIRVNQWAN 1y0eA 70 :DVFITATSKEVD T0355 136 :YVANEGF 1y0eA 82 :ELIESQC T0355 144 :EGRAAE 1y0eA 89 :EVIALD T0355 152 :RYR 1y0eA 97 :LQQ T0355 155 :SLLRAE 1y0eA 110 :SYIRTH T0355 161 :HIKVFADSHV 1y0eA 118 :NVEIMADIAT T0355 174 :AHAIT 1y0eA 128 :VEEAK T0355 182 :SIDEL 1y0eA 133 :NAARL T0355 189 :DLAFFDADGVIATGQRTGNSA 1y0eA 138 :GFDYIGTTLHGYTSYTQGQLL T0355 210 :SLEEIEEIGAATHLPLLVGSGV 1y0eA 162 :DFQFLKDVLQSVDAKVIAEGNV T0355 232 :NEGNIVEILKR 1y0eA 185 :TPDMYKRVMDL T0355 243 :TSGVIVASSLKE 1y0eA 197 :VHCSVVGGAITR T0355 261 :PVELA 1y0eA 209 :PKEIT T0355 280 :ALEHHHH 1y0eA 214 :KRFVQVM Number of specific fragments extracted= 17 number of extra gaps= 1 total=1198 Number of alignments=73 # 1y0eA read from 1y0eA/merged-good-all-a2m # found chain 1y0eA in template set Warning: unaligning (T0355)F165 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1y0eA)P117 Warning: unaligning (T0355)A166 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1y0eA)P117 T0355 19 :SKALI 1y0eA 3 :PHGLI T0355 24 :GMIHCPAFPGAP 1y0eA 9 :SCQALPDEPLHS T0355 46 :YDACMRDAERLIEGGMHGLIVE 1y0eA 21 :SFIMSKMALAAYEGGAVGIRAN T0355 101 :VPVGINVLANAPIPAFA 1y0eA 43 :TKEDILAIKETVDLPVI T0355 120 :KAGGAKF 1y0eA 60 :GIVKRDY T0355 127 :IRV 1y0eA 69 :SDV T0355 130 :NQWANA 1y0eA 77 :SKEVDE T0355 137 :VANEGFMEGRA 1y0eA 83 :LIESQCEVIAL T0355 148 :AEAM 1y0eA 98 :QQRP T0355 152 :RYRSLLRAEHIKV 1y0eA 103 :ETLDELVSYIRTH T0355 167 :DSHVKHG 1y0eA 118 :NVEIMAD T0355 177 :ITADRSIDELTR 1y0eA 125 :IATVEEAKNAAR T0355 193 :FDADGVIAT 1y0eA 137 :LGFDYIGTT T0355 202 :G 1y0eA 148 :G T0355 203 :QRTGNSA 1y0eA 152 :YTQGQLL T0355 210 :SLEEIEEIGAATHLPLLVGSGV 1y0eA 162 :DFQFLKDVLQSVDAKVIAEGNV T0355 232 :NEGNIVEILKR 1y0eA 185 :TPDMYKRVMDL T0355 243 :TSGVIVASSLKE 1y0eA 197 :VHCSVVGGAITR T0355 261 :PVELAR 1y0eA 209 :PKEITK T0355 281 :L 1y0eA 215 :R Number of specific fragments extracted= 20 number of extra gaps= 1 total=1218 Number of alignments=74 # 1y0eA read from 1y0eA/merged-good-all-a2m # found chain 1y0eA in template set Warning: unaligning (T0355)V137 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1y0eA)T96 Warning: unaligning (T0355)A138 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1y0eA)T96 Warning: unaligning (T0355)A159 because of BadResidue code CHAIN_BREAK_BEFORE in next template residue (1y0eA)P117 Warning: unaligning (T0355)E160 because of BadResidue code CHAIN_BREAK_BEFORE at template residue (1y0eA)P117 T0355 19 :SKAL 1y0eA 3 :PHGL T0355 25 :MIHCPAFPGAPRYRN 1y0eA 7 :IVSCQALPDEPLHSS T0355 43 :D 1y0eA 22 :F T0355 48 :ACMRDAERLIEGGMHGLIVE 1y0eA 23 :IMSKMALAAYEGGAVGIRAN T0355 81 :GPET 1y0eA 43 :TKED T0355 92 :TDRIVRTAGVPVGIN 1y0eA 47 :ILAIKETVDLPVIGI T0355 108 :LANAPIPAFAIAKAGGAKFIRVN 1y0eA 72 :FITATSKEVDELIESQCEVIALD T0355 139 :NEGFMEGRAAEAMRYRSL 1y0eA 97 :LQQRPKETLDELVSYIRT T0355 158 :R 1y0eA 115 :H T0355 161 :HIKVFADSHV 1y0eA 118 :NVEIMADIAT T0355 184 :DELTRDLAFFDADGVIAT 1y0eA 128 :VEEAKNAARLGFDYIGTT T0355 202 :GQRTGNSASLE 1y0eA 151 :SYTQGQLLYQN T0355 213 :EIEEIGAATHLPLLVGSGV 1y0eA 165 :FLKDVLQSVDAKVIAEGNV T0355 232 :NEGNIVEILKR 1y0eA 185 :TPDMYKRVMDL T0355 243 :TSGVIVA 1y0eA 197 :VHCSVVG Number of specific fragments extracted= 15 number of extra gaps= 2 total=1233 Number of alignments=75 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1twdA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0355 read from 1twdA/merged-good-all-a2m # 1twdA read from 1twdA/merged-good-all-a2m # found chain 1twdA in training set Warning: unaligning (T0355)A280 because last residue in template chain is (1twdA)K248 T0355 35 :PRYRNASMD 1twdA 4 :LEICCYSME T0355 52 :DAERLIEGGMHGLIV 1twdA 13 :CALTAQQNGADRVEL T0355 74 :FSKPDDI 1twdA 28 :CAAPKEG T0355 95 :IVRTA 1twdA 35 :GLTPS T0355 102 :PVGINVLANAPIPAFAIAKAGG 1twdA 40 :LGVLKSVRQRVTIPVHPIIRPR T0355 124 :AKF 1twdA 63 :GDF T0355 127 :IR 1twdA 67 :YS T0355 129 :VNQWAN 1twdA 75 :ILEDVR T0355 136 :YVANEGFMEGRAA 1twdA 81 :TVRELGFPGLVTG T0355 149 :EAMRYR 1twdA 102 :DMPRME T0355 155 :SLLR 1twdA 111 :AAAG T0355 161 :HIKVFAD 1twdA 115 :PLAVTFH T0355 172 :HGAHAITADRSIDELTR 1twdA 122 :RAFDMCANPLYTLNNLA T0355 194 :DADGVIATGQRTGNSASLEEIEEIGAATH 1twdA 141 :GIARVLTSGQKSDALQGLSKIMELIAHRD T0355 223 :LPLLVGSGVNEGNIVEILKR 1twdA 171 :PIIMAGAGVRAENLHHFLDA T0355 243 :TSGVIVA 1twdA 192 :VLEVHSS T0355 257 :VWW 1twdA 208 :RYR T0355 264 :LARVRSFVAAARPGLE 1twdA 232 :GAAVAEMKGIIERHQA Number of specific fragments extracted= 18 number of extra gaps= 0 total=1251 Number of alignments=76 # 1twdA read from 1twdA/merged-good-all-a2m # found chain 1twdA in training set Warning: unaligning (T0355)P261 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1twdA)Y225 Warning: unaligning (T0355)A280 because last residue in template chain is (1twdA)K248 T0355 23 :IGMIHCP 1twdA 4 :LEICCYS T0355 50 :MRDAERLIEGGMHGLIV 1twdA 11 :MECALTAQQNGADRVEL T0355 74 :FSKPDDIG 1twdA 28 :CAAPKEGG T0355 96 :VRTA 1twdA 36 :LTPS T0355 102 :PVGINVLANAPIPAFAIAKAGGAKF 1twdA 40 :LGVLKSVRQRVTIPVHPIIRPRGGD T0355 127 :I 1twdA 67 :Y T0355 128 :RVNQWANA 1twdA 74 :AILEDVRT T0355 137 :VANEGFMEGRA 1twdA 82 :VRELGFPGLVT T0355 148 :AEAM 1twdA 99 :GNVD T0355 152 :RYRSLLRAEH 1twdA 104 :PRMEKIMAAA T0355 165 :FADSHVKHGAHAITA 1twdA 114 :GPLAVTFHRAFDMCA T0355 181 :R 1twdA 129 :N T0355 183 :IDELTRDLAFFDADGVIATGQRTGNSASLEEIEEIGAATHLP 1twdA 130 :PLYTLNNLAELGIARVLTSGQKSDALQGLSKIMELIAHRDAP T0355 225 :LLVGSGVNEGNIVEILKR 1twdA 173 :IMAGAGVRAENLHHFLDA T0355 243 :TSGVIVASSLKE 1twdA 192 :VLEVHSSAGAWQ T0355 255 :GGVWWN 1twdA 205 :SPMRYR T0355 264 :LARVRSFVAAARPGLE 1twdA 232 :GAAVAEMKGIIERHQA Number of specific fragments extracted= 17 number of extra gaps= 0 total=1268 Number of alignments=77 # 1twdA read from 1twdA/merged-good-all-a2m # found chain 1twdA in training set Warning: unaligning (T0355)A21 because first residue in template chain is (1twdA)A2 Warning: unaligning (T0355)V257 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1twdA)Y225 Warning: unaligning (T0355)A280 because last residue in template chain is (1twdA)K248 T0355 22 :LIGMIHCP 1twdA 3 :LLEICCYS T0355 50 :MRDAERLIEGGMHGLIVENHGDVPFSK 1twdA 11 :MECALTAQQNGADRVELCAAPKEGGLT T0355 80 :IGPET 1twdA 38 :PSLGV T0355 92 :TDRIVRTAGVPVGINVLA 1twdA 43 :LKSVRQRVTIPVHPIIRP T0355 112 :PIPAFAIAKAGGAK 1twdA 75 :ILEDVRTVRELGFP T0355 130 :NQWANAYVANEGFMEGRAAEAMRYR 1twdA 89 :GLVTGVLDVDGNVDMPRMEKIMAAA T0355 160 :EHIKVFADSHVKHGA 1twdA 114 :GPLAVTFHRAFDMCA T0355 182 :SIDELTRDLAFFDADGVIATGQRTGNSA 1twdA 129 :NPLYTLNNLAELGIARVLTSGQKSDALQ T0355 211 :LEEIEEIGAATHLP 1twdA 158 :LSKIMELIAHRDAP T0355 225 :LLVGSGVNEGNIVEILKR 1twdA 173 :IMAGAGVRAENLHHFLDA T0355 243 :TSGVIVA 1twdA 192 :VLEVHSS T0355 258 :WWNPVELARVRSFVAAARPGLE 1twdA 226 :SRYIVDGAAVAEMKGIIERHQA Number of specific fragments extracted= 12 number of extra gaps= 0 total=1280 Number of alignments=78 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ox6A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ox6A expands to /projects/compbio/data/pdb/1ox6.pdb.gz 1ox6A:# T0355 read from 1ox6A/merged-good-all-a2m # 1ox6A read from 1ox6A/merged-good-all-a2m # adding 1ox6A to template set # found chain 1ox6A in template set Warning: unaligning (T0355)Y37 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ox6A)L276 Warning: unaligning (T0355)Y46 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ox6A)L276 Warning: unaligning (T0355)G70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ox6A)D304 Warning: unaligning (T0355)K76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ox6A)D304 T0355 2 :QTISDNAANAIQEI 1ox6A 214 :PPIPNYSAEEKELL T0355 17 :GRSKA 1ox6A 228 :MNDYS T0355 22 :LIGMIHCPAFPG 1ox6A 243 :CLDVRTNDQGDL T0355 36 :R 1ox6A 255 :V T0355 47 :DACMRDAERLIEGGMHGLIVENH 1ox6A 277 :GKPVQLAQKYYQQGADEVTFLNI T0355 77 :PDDIGPET 1ox6A 306 :PLKDTPML T0355 103 :VGINVLANAPIPAFAIAKAGGAKF 1ox6A 314 :EVLKQAAKTVFVPLTVGGGIKDIV T0355 127 :IRVNQWAN 1ox6A 344 :IPALEVAS T0355 136 :YVANEGFMEGRAAEAMRYR 1ox6A 352 :LYFRSGADKVSIGTDAVYA T0355 155 :SLLRAEHI 1ox6A 389 :TISKAYGA T0355 164 :VFADSHVK 1ox6A 399 :VVISVDPK T0355 172 :HGAHAITADR 1ox6A 411 :NSQADTKNKV T0355 183 :IDELTR 1ox6A 451 :VWELTR T0355 189 :DLAFFDADGVI 1ox6A 462 :GAGEILLNCID T0355 202 :GQRTGNSASLEEIEEIGAATHLPLLVGSGV 1ox6A 473 :KDGSNSGYDLELIEHVKDAVKIPVIASSGA T0355 232 :NEGNIVEILKR 1ox6A 504 :VPEHFEEAFLK T0355 243 :TSGVIVASSLKE 1ox6A 517 :ADACLGAGMFHR T0355 257 :VWWN 1ox6A 529 :GEFT T0355 267 :VRSFVAAARP 1ox6A 533 :VNDVKEYLLE Number of specific fragments extracted= 19 number of extra gaps= 0 total=1299 Number of alignments=79 # 1ox6A read from 1ox6A/merged-good-all-a2m # found chain 1ox6A in template set Warning: unaligning (T0355)Y37 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ox6A)L276 Warning: unaligning (T0355)Y46 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ox6A)L276 Warning: unaligning (T0355)G70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ox6A)D304 Warning: unaligning (T0355)S75 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ox6A)D304 T0355 1 :MQTISDNAANAIQ 1ox6A 216 :IPNYSAEEKELLM T0355 14 :EIFGRSKALIGMIHCPAFPGAP 1ox6A 232 :SNYGLTRRIIACLDVRTNDQGD T0355 36 :R 1ox6A 255 :V T0355 47 :DACMRDAERLIEGGMHGLIVENH 1ox6A 277 :GKPVQLAQKYYQQGADEVTFLNI T0355 76 :KPDDIGPE 1ox6A 305 :CPLKDTPM T0355 102 :PVGINVLANAPIPAFAIAKAGGAKF 1ox6A 313 :LEVLKQAAKTVFVPLTVGGGIKDIV T0355 127 :IRVNQWANA 1ox6A 344 :IPALEVASL T0355 137 :VANEGFMEGRAAEAM 1ox6A 353 :YFRSGADKVSIGTDA T0355 152 :RYRSLL 1ox6A 369 :YAAEKY T0355 162 :IKVFADS 1ox6A 375 :YELGNRG T0355 169 :HVKHGAHAIT 1ox6A 407 :RVYVNSQADT T0355 183 :IDELTRDLAFFDADGVIAT 1ox6A 451 :VWELTRACEALGAGEILLN T0355 202 :GQRTGN 1ox6A 475 :GSNSGY T0355 210 :SLEEIEEIGAATHLPLLVGSGV 1ox6A 481 :DLELIEHVKDAVKIPVIASSGA T0355 232 :NEGNIVEILKR 1ox6A 504 :VPEHFEEAFLK T0355 243 :TSGVIVASSLKE 1ox6A 517 :ADACLGAGMFHR T0355 256 :GVWW 1ox6A 529 :GEFT T0355 267 :VRSFVAAARP 1ox6A 533 :VNDVKEYLLE Number of specific fragments extracted= 18 number of extra gaps= 0 total=1317 Number of alignments=80 # 1ox6A read from 1ox6A/merged-good-all-a2m # found chain 1ox6A in template set Warning: unaligning (T0355)M42 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ox6A)L276 Warning: unaligning (T0355)G70 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ox6A)D304 Warning: unaligning (T0355)F74 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ox6A)D304 T0355 1 :MQTISDNAANAI 1ox6A 216 :IPNYSAEEKELL T0355 14 :EIFGRSKALIGMIHCPAFPGA 1ox6A 232 :SNYGLTRRIIACLDVRTNDQG T0355 43 :DA 1ox6A 277 :GK T0355 49 :CMRDAERLIEGGMHGLIVENH 1ox6A 279 :PVQLAQKYYQQGADEVTFLNI T0355 75 :SKPDDI 1ox6A 305 :CPLKDT T0355 87 :FMSVVTDRIVRTAGVPVGIN 1ox6A 311 :PMLEVLKQAAKTVFVPLTVG T0355 111 :APIPAFAIAKAGGAKFIRVN 1ox6A 345 :PALEVASLYFRSGADKVSIG T0355 145 :GRAAEAMRYRSLLR 1ox6A 365 :TDAVYAAEKYYELG T0355 160 :EHIK 1ox6A 379 :NRGD T0355 164 :VFADSHVKHGAHAITADRS 1ox6A 399 :VVISVDPKRVYVNSQADTK T0355 183 :IDELTRDLAFFDADGVIATGQR 1ox6A 451 :VWELTRACEALGAGEILLNCID T0355 205 :TG 1ox6A 474 :DG T0355 207 :NSASLEEIEEIGAATHLPLLVGSGV 1ox6A 478 :SGYDLELIEHVKDAVKIPVIASSGA T0355 232 :NEGNIVEILKR 1ox6A 504 :VPEHFEEAFLK T0355 243 :TSGVIVASSLKEGGVW 1ox6A 517 :ADACLGAGMFHRGEFT T0355 267 :VRSFVAAARP 1ox6A 533 :VNDVKEYLLE Number of specific fragments extracted= 16 number of extra gaps= 0 total=1333 Number of alignments=81 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1a53/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1a53 expands to /projects/compbio/data/pdb/1a53.pdb.gz 1a53:Warning: there is no chain 1a53 will retry with 1a53A # T0355 read from 1a53/merged-good-all-a2m # 1a53 read from 1a53/merged-good-all-a2m # adding 1a53 to template set # found chain 1a53 in template set T0355 8 :AANAIQEIFGRSKA 1a53 33 :LNERILEFNKRNIT T0355 22 :LIGMIHCPAFPGAP 1a53 48 :IIAEYKRKSPSGLD T0355 38 :RNASMD 1a53 62 :VERDPI T0355 51 :RDAERLI 1a53 68 :EYSKFME T0355 59 :GGMHGLIVE 1a53 75 :RYAVGLSIL T0355 74 :FSKPDDIGP 1a53 84 :TEEKYFNGS T0355 102 :PVGINVLANAPIPAFAIA 1a53 93 :YETLRKIASSVSIPILMK T0355 125 :KFIRVNQWANA 1a53 111 :DFIVKESQIDD T0355 137 :VANEGFMEGRAAEAMRYR 1a53 122 :AYNLGADTVLLIVKILTE T0355 155 :SLLRAEHIKVFADSH 1a53 147 :EYARSYGMEPLIEIN T0355 173 :GAHAIT 1a53 162 :DENDLD T0355 182 :SIDEL 1a53 168 :IALRI T0355 189 :DLAFFDADG 1a53 173 :GARFIGINS T0355 202 :GQRTGNSASLEEIEEIGAATH 1a53 182 :RDLETLEINKENQRKLISMIP T0355 223 :LPLLVGSGV 1a53 205 :VVKVAESGI T0355 232 :NEGNIVEILKR 1a53 215 :ERNEIEELRKL T0355 243 :TSGVIVASSLKEGGVW 1a53 227 :VNAFLIGSSLMRNPEK T0355 267 :VRS 1a53 243 :IKE Number of specific fragments extracted= 18 number of extra gaps= 0 total=1351 Number of alignments=82 # 1a53 read from 1a53/merged-good-all-a2m # found chain 1a53 in template set T0355 2 :QTISDNAANAIQEIFGRSKALIGMIHCPAFPGA 1a53 27 :QRPIISLNERILEFNKRNITAIIAEYKRKSPSG T0355 36 :RYRNASM 1a53 60 :LDVERDP T0355 50 :MRDAERLIEG 1a53 67 :IEYSKFMERY T0355 61 :MHGLIVE 1a53 77 :AVGLSIL T0355 74 :FSKPDDIGP 1a53 84 :TEEKYFNGS T0355 102 :PVGINVLANAPIPAFAIAKAGG 1a53 93 :YETLRKIASSVSIPILMKDFIV T0355 128 :R 1a53 115 :K T0355 130 :NQWANA 1a53 116 :ESQIDD T0355 137 :VANEGFMEGRA 1a53 122 :AYNLGADTVLL T0355 148 :AEAM 1a53 134 :VKIL T0355 152 :RYRSLLRAEHIKVFADSHVKHG 1a53 140 :RELESLLEYARSYGMEPLIEIN T0355 179 :ADRSIDELTR 1a53 162 :DENDLDIALR T0355 193 :FDADGVIATG 1a53 172 :IGARFIGINS T0355 203 :QRTGNSASLEEIEEIGAAT 1a53 183 :DLETLEINKENQRKLISMI T0355 222 :HLPLLVGSGV 1a53 204 :NVVKVAESGI T0355 232 :NEGNIVEILKR 1a53 215 :ERNEIEELRKL T0355 243 :TSGVIVASSLKEGGVW 1a53 227 :VNAFLIGSSLMRNPEK T0355 267 :VRSF 1a53 243 :IKEF Number of specific fragments extracted= 18 number of extra gaps= 0 total=1369 Number of alignments=83 # 1a53 read from 1a53/merged-good-all-a2m # found chain 1a53 in template set T0355 7 :NAANAIQEIFGRSKALIGMIHCPAFPGAPRYRN 1a53 32 :SLNERILEFNKRNITAIIAEYKRKSPSGLDVER T0355 41 :S 1a53 65 :D T0355 49 :CMRDAERLIEG 1a53 66 :PIEYSKFMERY T0355 61 :MHGLIVENHG 1a53 77 :AVGLSILTEE T0355 76 :KPDDIGPETSA 1a53 87 :KYFNGSYETLR T0355 94 :RIVRTAGVPVGINVLAN 1a53 98 :KIASSVSIPILMKDFIV T0355 112 :PIPAFAIAKAGGAKFIRVNQ 1a53 115 :KESQIDDAYNLGADTVLLIV T0355 140 :EGFMEGRAAEAMRYRSLLRAEH 1a53 135 :KILTERELESLLEYARSYGMEP T0355 165 :FADSHV 1a53 157 :LIEIND T0355 184 :DELTRDLAFFDADGVIATG 1a53 163 :ENDLDIALRIGARFIGINS T0355 203 :QRTGNSASLEEIEEIGA 1a53 183 :DLETLEINKENQRKLIS T0355 220 :ATHLPLLVGSGV 1a53 202 :PSNVVKVAESGI T0355 232 :NEGNIVEILKR 1a53 215 :ERNEIEELRKL T0355 243 :TSGVIVASSLKE 1a53 227 :VNAFLIGSSLMR T0355 263 :ELARVRSF 1a53 239 :NPEKIKEF Number of specific fragments extracted= 15 number of extra gaps= 0 total=1384 Number of alignments=84 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ujpA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0355 read from 1ujpA/merged-good-all-a2m # 1ujpA read from 1ujpA/merged-good-all-a2m # found chain 1ujpA in training set Warning: unaligning (T0355)K76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ujpA)G59 Warning: unaligning (T0355)G81 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ujpA)G59 Warning: unaligning (T0355)G197 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ujpA)E189 Warning: unaligning (T0355)S210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ujpA)E189 T0355 10 :NAIQE 1ujpA 8 :AKARS T0355 28 :CPAFPGAPRYRNASMD 1ujpA 13 :EGRAALIPYLTAGFPS T0355 46 :YDACMRDAERL 1ujpA 29 :REGFLQAVEEV T0355 61 :MHGLIVE 1ujpA 43 :ADLLEIG T0355 72 :VPFS 1ujpA 50 :LPYS T0355 82 :PETSAFMSVVTDRIVRTAGVPVGINVLANAPIPAFAIAKAGGAKF 1ujpA 60 :PVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVL T0355 127 :IRVNQWAN 1ujpA 106 :WGPERFFG T0355 136 :YVANEGFMEGRAAEAMRYR 1ujpA 114 :LFKQAGATGVILPDLPPDE T0355 155 :SLLRAEHIKVFADSHVKHGAHAIT 1ujpA 138 :RLAQEIGLETVFLLAPTSTDARIA T0355 182 :SIDELTRDLAF 1ujpA 162 :TVVRHATGFVY T0355 194 :DAD 1ujpA 173 :AVS T0355 211 :L 1ujpA 190 :V T0355 212 :EEIEEIGAATHLPLLVGSGV 1ujpA 192 :DLVRRIKARTALPVAVGFGV T0355 232 :NEGNIVEIL 1ujpA 213 :GKATAAQAA T0355 242 :RTSGVIVASSLKEGGVWW 1ujpA 222 :VADGVVVGSALVRALEEG T0355 260 :N 1ujpA 241 :S T0355 267 :VRSFVAAARPGL 1ujpA 242 :LAPLLQEIRQGL Number of specific fragments extracted= 17 number of extra gaps= 0 total=1401 Number of alignments=85 # 1ujpA read from 1ujpA/merged-good-all-a2m # found chain 1ujpA in training set Warning: unaligning (T0355)K76 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ujpA)G59 Warning: unaligning (T0355)G81 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ujpA)G59 Warning: unaligning (T0355)G197 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ujpA)E189 Warning: unaligning (T0355)S210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ujpA)E189 T0355 9 :ANAIQEIFG 1ujpA 4 :LEAFAKARS T0355 18 :RSKALIGMIHCPAFP 1ujpA 14 :GRAALIPYLTAGFPS T0355 46 :YDACMRDAER 1ujpA 29 :REGFLQAVEE T0355 61 :MHGLIVE 1ujpA 43 :ADLLEIG T0355 72 :VPFS 1ujpA 50 :LPYS T0355 82 :PETSAFMSVVTDRIVRTAGVPVGINVLANAPIPAFAIAKAGGAKF 1ujpA 60 :PVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVL T0355 127 :IRVNQWANA 1ujpA 106 :WGPERFFGL T0355 137 :VANEGFMEGRAAEAM 1ujpA 115 :FKQAGATGVILPDLP T0355 152 :RYRSLLRAEHIKVFADSHVKHGA 1ujpA 131 :DEDPGLVRLAQEIGLETVFLLAP T0355 177 :ITADRSIDELTRDLAFFDA 1ujpA 154 :TSTDARIATVVRHATGFVY T0355 196 :D 1ujpA 175 :S T0355 211 :L 1ujpA 190 :V T0355 212 :EEIEEIGAATHLPLLVGSGV 1ujpA 192 :DLVRRIKARTALPVAVGFGV T0355 232 :NEGNIVEIL 1ujpA 213 :GKATAAQAA T0355 243 :TSGVIVASSLKE 1ujpA 223 :ADGVVVGSALVR T0355 255 :GGVW 1ujpA 238 :EGRS T0355 267 :VRSFVAAARPGL 1ujpA 242 :LAPLLQEIRQGL Number of specific fragments extracted= 17 number of extra gaps= 0 total=1418 Number of alignments=86 # 1ujpA read from 1ujpA/merged-good-all-a2m # found chain 1ujpA in training set Warning: unaligning (T0355)V72 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1ujpA)G59 Warning: unaligning (T0355)P77 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ujpA)G59 Warning: unaligning (T0355)S210 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1ujpA)E189 T0355 8 :AANAIQEIFGRSK 1ujpA 3 :TLEAFAKARSEGR T0355 21 :ALIGMIHCP 1ujpA 17 :ALIPYLTAG T0355 39 :NASMDAIY 1ujpA 26 :FPSREGFL T0355 51 :RDAERLIEG 1ujpA 34 :QAVEEVLPY T0355 61 :MHGLIVENHGD 1ujpA 43 :ADLLEIGLPYS T0355 82 :PETSAFMS 1ujpA 60 :PVIQRASE T0355 90 :VVTDRIVRTAGVPVGIN 1ujpA 81 :ELVREVRALTEKPLFLM T0355 107 :VLANAPIPAFAIAKAGGAKFIR 1ujpA 103 :VLAWGPERFFGLFKQAGATGVI T0355 135 :AYVANEGFMEGR 1ujpA 125 :LPDLPPDEDPGL T0355 151 :MRYRSLLRAEHIKVF 1ujpA 137 :VRLAQEIGLETVFLL T0355 178 :TADRSIDELTRDLAFFDADGVIA 1ujpA 152 :APTSTDARIATVVRHATGFVYAV T0355 211 :LEEIEEIGAATHLPLLVGSGV 1ujpA 191 :KDLVRRIKARTALPVAVGFGV T0355 232 :NEGNIVEIL 1ujpA 213 :GKATAAQAA T0355 242 :RTSGVIVAS 1ujpA 222 :VADGVVVGS T0355 251 :SLKEGGV 1ujpA 235 :ALEEGRS T0355 267 :VRSFVAAARPGL 1ujpA 242 :LAPLLQEIRQGL Number of specific fragments extracted= 16 number of extra gaps= 0 total=1434 Number of alignments=87 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fliA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2fliA expands to /projects/compbio/data/pdb/2fli.pdb.gz 2fliA:# T0355 read from 2fliA/merged-good-all-a2m # 2fliA read from 2fliA/merged-good-all-a2m # adding 2fliA to template set # found chain 2fliA in template set Warning: unaligning (T0355)A30 because first residue in template chain is (2fliA)T3 T0355 31 :FPGAPRYRNASMD 2fliA 4 :LKIAPSILAADYA T0355 48 :ACMRDAERLIEGGMHGLIVENHGDV 2fliA 17 :NFASELARIEETDAEYVHIDIMDGQ T0355 74 :FSKPDDIG 2fliA 42 :FVPNISFG T0355 102 :PVGINVLANAPIPAFAIAKAG 2fliA 50 :ADVVASMRKHSKLVFDCHLMV T0355 127 :IRVNQWAN 2fliA 71 :VDPERYVE T0355 136 :YVANEGFMEGRAA 2fliA 79 :AFAQAGADIMTIH T0355 149 :EAMRYRSLLRAEHIKVFADSHVKHGAHAIT 2fliA 97 :HIHGALQKIKAAGMKAGVVINPGTPATALE T0355 182 :SIDELTRDLAFFDADGVI 2fliA 127 :PLLDLVDQVLIMTVNPGF T0355 202 :GQRTGNSASLEEIEEIGAA 2fliA 145 :GGQAFIPECLEKVATVAKW T0355 221 :THLPLLVGSGVNEGNIVEILKR 2fliA 169 :LSFDIEVDGGVDNKTIRACYEA T0355 243 :TSGVIVASSLKEGGV 2fliA 192 :ANVFVAGSYLFKASD T0355 263 :ELARVRSFVAAA 2fliA 207 :LVSQVQTLRTAL Number of specific fragments extracted= 12 number of extra gaps= 0 total=1446 Number of alignments=88 # 2fliA read from 2fliA/merged-good-all-a2m # found chain 2fliA in template set Warning: unaligning (T0355)S19 because first residue in template chain is (2fliA)T3 Warning: unaligning (T0355)R275 because last residue in template chain is (2fliA)N219 T0355 20 :KALIGM 2fliA 4 :LKIAPS T0355 37 :YRNASMD 2fliA 10 :ILAADYA T0355 48 :ACMRDAERLIEGGMHGLIVENHGDV 2fliA 17 :NFASELARIEETDAEYVHIDIMDGQ T0355 74 :FSKPDDIGP 2fliA 42 :FVPNISFGA T0355 103 :VGINVLANAPIPAFAIAKAGG 2fliA 51 :DVVASMRKHSKLVFDCHLMVV T0355 128 :RVNQWANA 2fliA 72 :DPERYVEA T0355 137 :VANEGFMEGRAAEAM 2fliA 80 :FAQAGADIMTIHTES T0355 152 :RYRSLLRAEHIKVFADSHVKHGA 2fliA 96 :RHIHGALQKIKAAGMKAGVVINP T0355 177 :ITADRS 2fliA 119 :GTPATA T0355 190 :LAFFDA 2fliA 125 :LEPLLD T0355 196 :DGVIAT 2fliA 134 :QVLIMT T0355 202 :GQRTGNSASLEEIEEIGAAT 2fliA 145 :GGQAFIPECLEKVATVAKWR T0355 222 :HLPLLVGSGVNEGNIVEILKR 2fliA 170 :SFDIEVDGGVDNKTIRACYEA T0355 243 :TSGVIVASSLKEG 2fliA 192 :ANVFVAGSYLFKA T0355 261 :PVELARVRSFVAAA 2fliA 205 :SDLVSQVQTLRTAL Number of specific fragments extracted= 15 number of extra gaps= 0 total=1461 Number of alignments=89 # 2fliA read from 2fliA/merged-good-all-a2m # found chain 2fliA in template set T0355 21 :ALIG 2fliA 5 :KIAP T0355 31 :FPGAPRYRN 2fliA 9 :SILAADYAN T0355 49 :CMRDAERLIEGGMHGLIVENHGDVPFSKP 2fliA 18 :FASELARIEETDAEYVHIDIMDGQFVPNI T0355 79 :DIGPETSAFM 2fliA 47 :SFGADVVASM T0355 96 :VRTAGVPVGINVLANAPIPAFAIAKAGGAKFIRVNQ 2fliA 57 :RKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHT T0355 142 :FMEGRAAEAMRYRSLLRA 2fliA 93 :ESTRHIHGALQKIKAAGM T0355 163 :KVFADSHVKHGAHAITAD 2fliA 111 :KAGVVINPGTPATALEPL T0355 192 :FFDADGVIATG 2fliA 129 :LDLVDQVLIMT T0355 203 :QRTGNSAS 2fliA 143 :GFGGQAFI T0355 211 :LEEIEEIGA 2fliA 154 :LEKVATVAK T0355 220 :ATHLPLLVGSGVNEGNIVEILKR 2fliA 168 :GLSFDIEVDGGVDNKTIRACYEA T0355 243 :TSGVIVASSLKEGGV 2fliA 192 :ANVFVAGSYLFKASD T0355 264 :LARVRSFVAAA 2fliA 208 :VSQVQTLRTAL Number of specific fragments extracted= 13 number of extra gaps= 0 total=1474 Number of alignments=90 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ub3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0355 read from 1ub3A/merged-good-all-a2m # 1ub3A read from 1ub3A/merged-good-all-a2m # found chain 1ub3A in training set T0355 21 :ALIGMIHCPAFPG 1ub3A 5 :AHIDHTLLKPTAT T0355 46 :YDACMRDAERLIEGGMHGLIV 1ub3A 18 :LEEVAKAAEEALEYGFYGLCI T0355 76 :KPDDI 1ub3A 39 :PPSYV T0355 89 :SVVTDR 1ub3A 44 :AWVRAR T0355 98 :TAG 1ub3A 50 :YPH T0355 111 :APIPAFAIAKAGGAKF 1ub3A 53 :APFRLVTVVGFPLGYQ T0355 128 :R 1ub3A 69 :E T0355 129 :VNQWAN 1ub3A 73 :KALEAA T0355 136 :YVANEGFMEGRAA 1ub3A 79 :LACARGADEVDMV T0355 149 :EAMRYRSLLRA 1ub3A 101 :DLDYLEAEVRA T0355 160 :EHIKVFADSHVK 1ub3A 117 :PQAVLKVILETG T0355 172 :HGAHAIT 1ub3A 130 :FSPEEIA T0355 182 :SIDELTR 1ub3A 137 :RLAEAAI T0355 189 :DLAFFDADGVI 1ub3A 146 :GADFLKTSTGF T0355 205 :TGNSASLEEIEEIGAATH 1ub3A 157 :GPRGASLEDVALLVRVAQ T0355 223 :LPLLVGSGV 1ub3A 177 :AQVKAAGGI T0355 232 :NEGNIVEILKR 1ub3A 187 :DRETALRMLKA T0355 243 :TSGVIV 1ub3A 199 :ASRLGT T0355 249 :ASSLK 1ub3A 207 :GVALV Number of specific fragments extracted= 19 number of extra gaps= 0 total=1493 Number of alignments=91 # 1ub3A read from 1ub3A/merged-good-all-a2m # found chain 1ub3A in training set T0355 20 :KALIGMIHCPAFPG 1ub3A 4 :AAHIDHTLLKPTAT T0355 46 :YDACMRDAERLIEGGMHGLIV 1ub3A 18 :LEEVAKAAEEALEYGFYGLCI T0355 76 :KPDDI 1ub3A 39 :PPSYV T0355 103 :VGINVLANAPIPAFAIAKAGGAKFIRV 1ub3A 44 :AWVRARYPHAPFRLVTVVGFPLGYQEK T0355 130 :NQWANA 1ub3A 74 :ALEAAL T0355 137 :VANEGFMEGRAAEAMRYR 1ub3A 80 :ACARGADEVDMVLHLGRA T0355 155 :SLLRA 1ub3A 103 :DYLEA T0355 160 :EHIKVFADSHVKH 1ub3A 111 :AVREAVPQAVLKV T0355 173 :GAHAITADRSIDELTRDLAFFDADGVIAT 1ub3A 125 :LETGYFSPEEIARLAEAAIRGGADFLKTS T0355 202 :GQRTG 1ub3A 155 :GFGPR T0355 208 :SASLEEIEEIGAAT 1ub3A 160 :GASLEDVALLVRVA T0355 223 :LPLLVGSGV 1ub3A 177 :AQVKAAGGI T0355 232 :NEGNIVEILKR 1ub3A 187 :DRETALRMLKA T0355 243 :TSGVIVAS 1ub3A 199 :ASRLGTSS Number of specific fragments extracted= 14 number of extra gaps= 0 total=1507 Number of alignments=92 # 1ub3A read from 1ub3A/merged-good-all-a2m # found chain 1ub3A in training set T0355 23 :IGMIHCP 1ub3A 7 :IDHTLLK T0355 38 :RNASMDAI 1ub3A 14 :PTATLEEV T0355 50 :MRDAERLIEGGMHGLI 1ub3A 22 :AKAAEEALEYGFYGLC T0355 80 :IGPETSA 1ub3A 38 :IPPSYVA T0355 94 :RIVRTA 1ub3A 45 :WVRARY T0355 100 :GVPV 1ub3A 54 :PFRL T0355 105 :INVLAN 1ub3A 58 :VTVVGF T0355 111 :API 1ub3A 73 :KAL T0355 115 :AFAIAKAGGAK 1ub3A 76 :EAALACARGAD T0355 128 :RVNQWANAYVANEGFMEGRAAEAMRYRSLLRAEHIKVF 1ub3A 87 :EVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVI T0355 168 :SHVKH 1ub3A 125 :LETGY T0355 177 :ITA 1ub3A 130 :FSP T0355 181 :RSIDELTRDLAFFDADGVIATGQRTGNSASLEEIEEIGA 1ub3A 133 :EEIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVR T0355 220 :ATHLPLLVGSGV 1ub3A 174 :QGRAQVKAAGGI T0355 232 :NEGNIVEILKR 1ub3A 187 :DRETALRMLKA T0355 243 :TSGVIV 1ub3A 199 :ASRLGT Number of specific fragments extracted= 16 number of extra gaps= 0 total=1523 Number of alignments=93 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tqjA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0355 read from 1tqjA/merged-good-all-a2m # 1tqjA read from 1tqjA/merged-good-all-a2m # found chain 1tqjA in training set Warning: unaligning (T0355)P29 because first residue in template chain is (1tqjA)K3 Warning: unaligning (T0355)A195 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tqjA)N144 Warning: unaligning (T0355)D196 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tqjA)N144 Warning: unaligning (T0355)G197 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tqjA)Q150 Warning: unaligning (T0355)R204 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tqjA)Q150 T0355 30 :AFPGAPRYRNASMD 1tqjA 4 :NIVVAPSILSADFS T0355 48 :ACMRDAERLIEGGMHGLIVENHGDV 1tqjA 18 :RLGEEIKAVDEAGADWIHVDVMDGR T0355 74 :FSKPDDIGPET 1tqjA 43 :FVPNITIGPLI T0355 105 :INVLANAPIPAFAIAKAG 1tqjA 54 :VDAIRPLTKKTLDVHLMI T0355 127 :IRVNQWANA 1tqjA 72 :VEPEKYVED T0355 137 :VANEGFMEGRAA 1tqjA 81 :FAKAGADIISVH T0355 149 :EAMRYRSLLRAEHIKVFADSHVKHGAHAIT 1tqjA 100 :HLHRTLCQIRELGKKAGAVLNPSTPLDFLE T0355 182 :SIDELTRDLAFFD 1tqjA 130 :YVLPVCDLILIMS T0355 205 :TGNSASLEEIEEIGAATH 1tqjA 151 :SFIPEVLPKIRALRQMCD T0355 223 :LPLLVGSGVNEGNIVEILKR 1tqjA 174 :PWIEVDGGLKPNNTWQVLEA T0355 243 :TSGVIVASSLKEGGV 1tqjA 195 :ANAIVAGSAVFNAPN T0355 263 :ELARVRSFV 1tqjA 210 :YAEAIAGVR Number of specific fragments extracted= 12 number of extra gaps= 1 total=1535 Number of alignments=94 # 1tqjA read from 1tqjA/merged-good-all-a2m # found chain 1tqjA in training set Warning: unaligning (T0355)R18 because first residue in template chain is (1tqjA)K3 Warning: unaligning (T0355)G197 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tqjA)N144 Warning: unaligning (T0355)V198 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tqjA)N144 Warning: unaligning (T0355)I199 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tqjA)Q150 Warning: unaligning (T0355)R204 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tqjA)Q150 T0355 19 :SKALIG 1tqjA 4 :NIVVAP T0355 36 :RYRNASMDA 1tqjA 10 :SILSADFSR T0355 49 :CMRDAERLIEGGMHGLIVENHGDV 1tqjA 19 :LGEEIKAVDEAGADWIHVDVMDGR T0355 74 :FSKPDDIGP 1tqjA 43 :FVPNITIGP T0355 103 :VGINVLANAPIPAFAIAKAGG 1tqjA 52 :LIVDAIRPLTKKTLDVHLMIV T0355 128 :RVNQWANA 1tqjA 73 :EPEKYVED T0355 137 :VANEGFMEGRA 1tqjA 81 :FAKAGADIISV T0355 148 :AEAMRYRSLLRAEHIKVFADSHVKHGA 1tqjA 95 :HNASPHLHRTLCQIRELGKKAGAVLNP T0355 177 :ITADRSIDELTRDLAFFDA 1tqjA 122 :STPLDFLEYVLPVCDLILI T0355 196 :D 1tqjA 142 :S T0355 205 :TGNSASLEEIEEIGAAT 1tqjA 151 :SFIPEVLPKIRALRQMC T0355 222 :HLPLLVGSGVNEGNIVEILKR 1tqjA 173 :DPWIEVDGGLKPNNTWQVLEA T0355 243 :TSGVIVASSLKEGGV 1tqjA 195 :ANAIVAGSAVFNAPN T0355 267 :VRSFVAAARP 1tqjA 210 :YAEAIAGVRN Number of specific fragments extracted= 14 number of extra gaps= 1 total=1549 Number of alignments=95 # 1tqjA read from 1tqjA/merged-good-all-a2m # found chain 1tqjA in training set Warning: unaligning (T0355)S19 because first residue in template chain is (1tqjA)K3 Warning: unaligning (T0355)Q203 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1tqjA)N144 Warning: unaligning (T0355)R204 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1tqjA)N144 Warning: unaligning (T0355)T205 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1tqjA)Q150 Warning: unaligning (T0355)S210 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1tqjA)Q150 T0355 20 :KALIGM 1tqjA 4 :NIVVAP T0355 30 :AFPGAPRYR 1tqjA 10 :SILSADFSR T0355 49 :CMRDAERLIEGGMHGLIVENHGDVPFSKP 1tqjA 19 :LGEEIKAVDEAGADWIHVDVMDGRFVPNI T0355 79 :DIGPET 1tqjA 48 :TIGPLI T0355 92 :TDRIVRTAGVPVGINVLANAPI 1tqjA 54 :VDAIRPLTKKTLDVHLMIVEPE T0355 115 :AFAIAK 1tqjA 78 :VEDFAK T0355 122 :GGAKFIRVNQ 1tqjA 84 :AGADIISVHV T0355 139 :NEG 1tqjA 94 :EHN T0355 143 :MEGRAAEAMRYRSLLRA 1tqjA 97 :ASPHLHRTLCQIRELGK T0355 163 :KVFADSHVKHGAHAITADRS 1tqjA 114 :KAGAVLNPSTPLDFLEYVLP T0355 194 :DADGVIATG 1tqjA 134 :VCDLILIMS T0355 211 :LEEIEEIGA 1tqjA 157 :LPKIRALRQ T0355 220 :ATHLPLLVGSGVNEGNIVEILKR 1tqjA 171 :GLDPWIEVDGGLKPNNTWQVLEA T0355 243 :TSGVIVASSLKEGGV 1tqjA 195 :ANAIVAGSAVFNAPN T0355 270 :FVAAARPGL 1tqjA 210 :YAEAIAGVR Number of specific fragments extracted= 15 number of extra gaps= 1 total=1564 Number of alignments=96 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1pii/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1pii expands to /projects/compbio/data/pdb/1pii.pdb.gz 1pii:Warning: there is no chain 1pii will retry with 1piiA Skipped atom 428, because occupancy 0.540 <= existing 0.540 in 1pii Skipped atom 436, because occupancy 0.530 <= existing 0.700 in 1pii Skipped atom 438, because occupancy 0.390 <= existing 0.640 in 1pii Skipped atom 1193, because occupancy 0.710 <= existing 0.710 in 1pii Skipped atom 1195, because occupancy 0.650 <= existing 0.670 in 1pii Skipped atom 1197, because occupancy 0.680 <= existing 0.680 in 1pii Skipped atom 1199, because occupancy 0.820 <= existing 0.860 in 1pii Skipped atom 1201, because occupancy 0.650 <= existing 0.750 in 1pii Skipped atom 1203, because occupancy 0.620 <= existing 0.830 in 1pii Skipped atom 1205, because occupancy 0.750 <= existing 0.800 in 1pii Skipped atom 1207, because occupancy 0.540 <= existing 0.630 in 1pii Skipped atom 1570, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1572, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1574, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1576, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1578, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1580, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1582, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1584, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1586, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1588, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 1590, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 2537, because occupancy 0.510 <= existing 0.520 in 1pii Skipped atom 2539, because occupancy 0.450 <= existing 0.450 in 1pii Skipped atom 2541, because occupancy 0.470 <= existing 0.470 in 1pii Skipped atom 2543, because occupancy 0.550 <= existing 0.550 in 1pii Skipped atom 2545, because occupancy 0.500 <= existing 0.500 in 1pii Skipped atom 2547, because occupancy 0.490 <= existing 0.540 in 1pii Skipped atom 2549, because occupancy 0.440 <= existing 0.510 in 1pii Skipped atom 2902, because occupancy 0.620 <= existing 0.620 in 1pii Skipped atom 2906, because occupancy 0.600 <= existing 0.600 in 1pii Skipped atom 2908, because occupancy 0.480 <= existing 0.480 in 1pii Skipped atom 2910, because occupancy 0.510 <= existing 0.520 in 1pii Skipped atom 2912, because occupancy 0.410 <= existing 0.480 in 1pii Skipped atom 2914, because occupancy 0.350 <= existing 0.470 in 1pii Skipped atom 2918, because occupancy 0.380 <= existing 0.420 in 1pii Skipped atom 2922, because occupancy 0.560 <= existing 0.670 in 1pii # T0355 read from 1pii/merged-good-all-a2m # 1pii read from 1pii/merged-good-all-a2m # adding 1pii to template set # found chain 1pii in template set Warning: unaligning (T0355)S19 because of BadResidue code BAD_PEPTIDE in next template residue (1pii)R47 Warning: unaligning (T0355)K20 because of BadResidue code BAD_PEPTIDE at template residue (1pii)R47 Warning: unaligning (T0355)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1pii)S60 Warning: unaligning (T0355)R38 because of BadResidue code BAD_PEPTIDE in next template residue (1pii)D67 Warning: unaligning (T0355)N39 because of BadResidue code BAD_PEPTIDE at template residue (1pii)D67 Warning: unaligning (T0355)T221 because of BadResidue code BAD_PEPTIDE in next template residue (1pii)G206 Warning: unaligning (T0355)H222 because of BadResidue code BAD_PEPTIDE at template residue (1pii)G206 T0355 11 :AIQEIFGR 1pii 38 :HFYDALQG T0355 21 :ALIGMIHCPAF 1pii 48 :TAFILECKKAS T0355 33 :GAPRY 1pii 61 :KGVIR T0355 40 :ASMD 1pii 68 :FDPA T0355 51 :RDAERL 1pii 72 :RIAAIY T0355 58 :EGGMHGLIVE 1pii 78 :KHYASAISVL T0355 75 :SKPDDI 1pii 88 :TDEKYF T0355 96 :VRTA 1pii 94 :QGSF T0355 103 :VGINVLANAPIPAFAIAKA 1pii 98 :NFLPIVSQIAPQPILCKDF T0355 126 :FIR 1pii 117 :IID T0355 130 :NQWAN 1pii 120 :PYQIY T0355 136 :YVANEGFMEGRAA 1pii 125 :LARYYQADACLLM T0355 149 :EAMRYR 1pii 142 :DDDQYR T0355 155 :SLLRAEHIKVFADSHV 1pii 151 :AVAHSLEMGVLTEVSN T0355 174 :AHAIT 1pii 167 :EEEQE T0355 182 :SIDEL 1pii 172 :RAIAL T0355 194 :DADGVIATGQR 1pii 177 :GAKVVGINNRD T0355 205 :TGNSASLEEIEEIGAA 1pii 189 :RDLSIDLNRTRELAPK T0355 223 :LPLLVGSGV 1pii 209 :VTVISESGI T0355 232 :NEGNIVEILKRTSGVIVASSLKEGGV 1pii 219 :TYAQVRELSHFANGFLIGSALMAHDD T0355 259 :W 1pii 245 :L Number of specific fragments extracted= 21 number of extra gaps= 4 total=1585 Number of alignments=97 # 1pii read from 1pii/merged-good-all-a2m # found chain 1pii in template set Warning: unaligning (T0355)S19 because of BadResidue code BAD_PEPTIDE in next template residue (1pii)R47 Warning: unaligning (T0355)K20 because of BadResidue code BAD_PEPTIDE at template residue (1pii)R47 Warning: unaligning (T0355)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1pii)S60 Warning: unaligning (T0355)G33 because of BadResidue code BAD_PEPTIDE at template residue (1pii)S60 Warning: unaligning (T0355)R38 because of BadResidue code BAD_PEPTIDE in next template residue (1pii)D67 Warning: unaligning (T0355)N39 because of BadResidue code BAD_PEPTIDE at template residue (1pii)D67 Warning: unaligning (T0355)T221 because of BadResidue code BAD_PEPTIDE in next template residue (1pii)G206 T0355 12 :IQEIFGR 1pii 39 :FYDALQG T0355 21 :ALIGMIHCPAF 1pii 48 :TAFILECKKAS T0355 34 :AP 1pii 61 :KG T0355 36 :RY 1pii 64 :IR T0355 40 :ASMD 1pii 68 :FDPA T0355 51 :RDAERL 1pii 72 :RIAAIY T0355 58 :EGGMHGLIVE 1pii 78 :KHYASAISVL T0355 74 :FSKPDDIGP 1pii 88 :TDEKYFQGS T0355 102 :PVGINVLANAPIPAFAI 1pii 97 :FNFLPIVSQIAPQPILC T0355 123 :GAKFIR 1pii 114 :KDFIID T0355 130 :NQWANA 1pii 120 :PYQIYL T0355 137 :VANEGFMEGRAAEAM 1pii 126 :ARYYQADACLLMLSV T0355 152 :RYRSLLRAEHIKVFADSHVKHG 1pii 144 :DQYRQLAAVAHSLEMGVLTEVS T0355 179 :ADRSIDELTR 1pii 166 :NEEEQERAIA T0355 193 :FDADGVIATG 1pii 176 :LGAKVVGINN T0355 203 :QRTGNSASLEEIEEIGAA 1pii 187 :DLRDLSIDLNRTRELAPK T0355 222 :HLPLLVGSGV 1pii 208 :NVTVISESGI T0355 232 :NEGNIVEILKRTSGVIVASSLKEG 1pii 219 :TYAQVRELSHFANGFLIGSALMAH T0355 261 :PVELARVRS 1pii 243 :DDLHAAVRR Number of specific fragments extracted= 19 number of extra gaps= 4 total=1604 Number of alignments=98 # 1pii read from 1pii/merged-good-all-a2m # found chain 1pii in template set Warning: unaligning (T0355)S19 because of BadResidue code BAD_PEPTIDE in next template residue (1pii)R47 Warning: unaligning (T0355)K20 because of BadResidue code BAD_PEPTIDE at template residue (1pii)R47 Warning: unaligning (T0355)P32 because of BadResidue code BAD_PEPTIDE in next template residue (1pii)S60 Warning: unaligning (T0355)G33 because of BadResidue code BAD_PEPTIDE at template residue (1pii)S60 Warning: unaligning (T0355)R38 because of BadResidue code BAD_PEPTIDE in next template residue (1pii)D67 Warning: unaligning (T0355)N39 because of BadResidue code BAD_PEPTIDE at template residue (1pii)D67 Warning: unaligning (T0355)A220 because of BadResidue code BAD_PEPTIDE at template residue (1pii)G206 T0355 12 :IQEIFGR 1pii 39 :FYDALQG T0355 21 :ALIGMIHCPAF 1pii 48 :TAFILECKKAS T0355 34 :AP 1pii 61 :KG T0355 36 :RY 1pii 64 :IR T0355 40 :ASMD 1pii 68 :FDPA T0355 51 :RDAERLIE 1pii 72 :RIAAIYKH T0355 60 :GMHGLIVENHGDVPFSKPD 1pii 80 :YASAISVLTDEKYFQGSFN T0355 91 :VTDRIVRTAGVPVGINVLANAPIPA 1pii 99 :FLPIVSQIAPQPILCKDFIIDPYQI T0355 117 :AIAKAGGAKFIRVNQ 1pii 124 :YLARYYQADACLLML T0355 136 :YV 1pii 139 :SV T0355 142 :FMEGRAAEAMRYRSLLR 1pii 141 :LDDDQYRQLAAVAHSLE T0355 162 :IKVFADSHV 1pii 158 :MGVLTEVSN T0355 184 :DELTRDLAFFDADGVIATGQ 1pii 167 :EEEQERAIALGAKVVGINNR T0355 204 :RTGNSASLEEIEEIGA 1pii 188 :LRDLSIDLNRTRELAP T0355 221 :THLPLLVGSGVN 1pii 207 :HNVTVISESGIN T0355 234 :GNIVEILKRTSGVIVASSLKEGGV 1pii 221 :AQVRELSHFANGFLIGSALMAHDD T0355 263 :ELARVRSFVA 1pii 264 :RGQDAKAAYD Number of specific fragments extracted= 17 number of extra gaps= 4 total=1621 Number of alignments=99 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kfbA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0355/1kfbA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0355/1kfbA/merged-good-all-a2m.gz for input Trying 1kfbA/merged-good-all-a2m Error: Couldn't open file 1kfbA/merged-good-all-a2m or 1kfbA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xi3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0355 read from 1xi3A/merged-good-all-a2m # 1xi3A read from 1xi3A/merged-good-all-a2m # found chain 1xi3A in training set Warning: unaligning (T0355)Q131 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xi3A)R70 Warning: unaligning (T0355)W132 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xi3A)R70 Warning: unaligning (T0355)D196 because of BadResidue code BAD_PEPTIDE in next template residue (1xi3A)S128 Warning: unaligning (T0355)G197 because of BadResidue code BAD_PEPTIDE at template residue (1xi3A)S128 Warning: unaligning (T0355)T201 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xi3A)D137 Warning: unaligning (T0355)G206 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xi3A)D137 T0355 37 :YRNASMD 1xi3A 10 :YVITDRR T0355 49 :CMRDAERLIEGGMHGLIVE 1xi3A 20 :EVESVREALEGGATAIQMR T0355 75 :SKP 1xi3A 39 :IKN T0355 79 :DIGPETSAFMSVVTD 1xi3A 42 :APTREMYEIGKTLRQ T0355 118 :IAKAGGAKFI 1xi3A 57 :LTREYDALFF T0355 129 :VN 1xi3A 67 :VD T0355 133 :AN 1xi3A 71 :VD T0355 136 :YVANEGFMEGRAAEAMRYRSLLRA 1xi3A 73 :VALAVDADGVQLGPEDMPIEVAKE T0355 160 :EHIKVFADS 1xi3A 99 :PNLIIGASV T0355 172 :HGAHAIT 1xi3A 108 :YSLEEAL T0355 182 :SIDEL 1xi3A 115 :EAEKK T0355 189 :DLAFFDA 1xi3A 120 :GADYLGA T0355 198 :VIA 1xi3A 129 :VFP T0355 207 :NSA 1xi3A 138 :ARV T0355 210 :SLEEIEEIGAATHLPLLVGSGVNEGNIVEILKR 1xi3A 142 :GLEGLRKIVESVKIPVVAIGGINKDNAREVLKT T0355 243 :TSGVIVASSLKEGGV 1xi3A 176 :VDGIAVISAVMGAED T0355 263 :ELARVRSFVAAARPGL 1xi3A 191 :VRKATEELRKIVEEVL Number of specific fragments extracted= 17 number of extra gaps= 2 total=1638 Number of alignments=100 # 1xi3A read from 1xi3A/merged-good-all-a2m # found chain 1xi3A in training set Warning: unaligning (T0355)I127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1xi3A)R70 Warning: unaligning (T0355)R128 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1xi3A)R70 Warning: unaligning (T0355)D196 because of BadResidue code BAD_PEPTIDE at template residue (1xi3A)S128 Warning: unaligning (T0355)A200 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1xi3A)D137 Warning: unaligning (T0355)G206 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xi3A)D137 T0355 21 :A 1xi3A 8 :K T0355 23 :IGMIHCPAFPG 1xi3A 9 :LYVITDRRLKP T0355 49 :CMRDAERLIEGGMHGLIVE 1xi3A 20 :EVESVREALEGGATAIQMR T0355 75 :SKP 1xi3A 39 :IKN T0355 79 :DIGPETSAFMSVVTDR 1xi3A 42 :APTREMYEIGKTLRQL T0355 108 :LAN 1xi3A 58 :TRE T0355 112 :PIPAFAI 1xi3A 61 :YDALFFV T0355 129 :VNQ 1xi3A 71 :VDV T0355 137 :VANEGFMEGRAAEAM 1xi3A 74 :ALAVDADGVQLGPED T0355 152 :R 1xi3A 90 :P T0355 158 :RAEHIKVFADSHVKHGA 1xi3A 91 :IEVAKEIAPNLIIGASV T0355 178 :TADRSIDELTRD 1xi3A 108 :YSLEEALEAEKK T0355 190 :LAFFDA 1xi3A 121 :ADYLGA T0355 197 :GVI 1xi3A 129 :VFP T0355 207 :NSA 1xi3A 138 :ARV T0355 210 :SLEEIEEIGAATHLPLLVGSGVNEGNIVEILKR 1xi3A 142 :GLEGLRKIVESVKIPVVAIGGINKDNAREVLKT T0355 243 :TSGVIVASSLKEG 1xi3A 176 :VDGIAVISAVMGA T0355 261 :PVELARVRSFVAAARPGL 1xi3A 189 :EDVRKATEELRKIVEEVL Number of specific fragments extracted= 18 number of extra gaps= 2 total=1656 Number of alignments=101 # 1xi3A read from 1xi3A/merged-good-all-a2m # found chain 1xi3A in training set Warning: unaligning (T0355)T201 because of BadResidue code BAD_PEPTIDE in next template residue (1xi3A)S128 Warning: unaligning (T0355)G202 because of BadResidue code BAD_PEPTIDE at template residue (1xi3A)S128 Warning: unaligning (T0355)T205 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1xi3A)D137 T0355 23 :IGMI 1xi3A 9 :LYVI T0355 33 :GAPRYRN 1xi3A 13 :TDRRLKP T0355 49 :CMRDAERLIEGGMHGLIVEN 1xi3A 20 :EVESVREALEGGATAIQMRI T0355 76 :KP 1xi3A 40 :KN T0355 80 :IGPETSAFMSVVTDRIVRTAGVPVGIN 1xi3A 42 :APTREMYEIGKTLRQLTREYDALFFVD T0355 116 :FAIAKAGGAKFIRV 1xi3A 71 :VDVALAVDADGVQL T0355 138 :ANEGFMEGRAAEA 1xi3A 85 :GPEDMPIEVAKEI T0355 159 :AEHIKVFADSHV 1xi3A 98 :APNLIIGASVYS T0355 184 :DELTRDLAFFDADGVIA 1xi3A 110 :LEEALEAEKKGADYLGA T0355 206 :GNSASLEEIEEIGAATHLPLLVGSGVNEGNIVEILKR 1xi3A 138 :ARVIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKT T0355 243 :TSGVIVASSLKEGGV 1xi3A 176 :VDGIAVISAVMGAED T0355 264 :LARVRSFVAAARPGL 1xi3A 192 :RKATEELRKIVEEVL Number of specific fragments extracted= 12 number of extra gaps= 1 total=1668 Number of alignments=102 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wa3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wa3A expands to /projects/compbio/data/pdb/1wa3.pdb.gz 1wa3A:# T0355 read from 1wa3A/merged-good-all-a2m # 1wa3A read from 1wa3A/merged-good-all-a2m # adding 1wa3A to template set # found chain 1wa3A in template set Warning: unaligning (T0355)L252 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1wa3A)V182 Warning: unaligning (T0355)K253 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1wa3A)V182 Warning: unaligning (T0355)G277 because last residue in template chain is (1wa3A)C203 T0355 9 :ANAIQEI 1wa3A 4 :EELFKKH T0355 21 :ALIGMIHCPA 1wa3A 11 :KIVAVLRANS T0355 46 :YDACMRDAERLIEGGMHGLIVE 1wa3A 21 :VEEAKEKALAVFEGGVHLIEIT T0355 70 :GDVP 1wa3A 43 :FTVP T0355 79 :DIGPETSA 1wa3A 47 :DADTVIKE T0355 105 :INVLANAPIPAFAI 1wa3A 55 :LSFLKEKGAIIGAG T0355 128 :RVN 1wa3A 69 :TVT T0355 131 :QWAN 1wa3A 74 :EQCR T0355 136 :YVANEGFMEGRAAEAMRYR 1wa3A 78 :KAVESGAEFIVSPHLDEEI T0355 155 :SLLRAEHIKVFADSHV 1wa3A 98 :QFCKEKGVFYMPGVMT T0355 174 :AHAIT 1wa3A 114 :PTELV T0355 182 :SIDEL 1wa3A 119 :KAMKL T0355 194 :DADGVIAT 1wa3A 124 :GHTILKLF T0355 209 :ASLEEIEEIGAATH 1wa3A 136 :VGPQFVKAMKGPFP T0355 223 :LPLLVGSGVNEGNIVEILKR 1wa3A 151 :VKFVPTGGVNLDNVCEWFKA T0355 243 :TSGVIVASS 1wa3A 172 :VLAVGVGSA T0355 254 :EG 1wa3A 183 :KG T0355 259 :WNPVELARVRSFVAAARP 1wa3A 185 :TPDEVREKAKAFVEKIRG Number of specific fragments extracted= 18 number of extra gaps= 1 total=1686 Number of alignments=103 # 1wa3A read from 1wa3A/merged-good-all-a2m # found chain 1wa3A in template set Warning: unaligning (T0355)N7 because first residue in template chain is (1wa3A)K2 Warning: unaligning (T0355)L252 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1wa3A)V182 Warning: unaligning (T0355)K253 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1wa3A)V182 Warning: unaligning (T0355)G277 because last residue in template chain is (1wa3A)C203 T0355 8 :AANAIQEI 1wa3A 3 :MEELFKKH T0355 21 :ALIGMIHCPA 1wa3A 11 :KIVAVLRANS T0355 46 :YDACMRDAERLIEGGMHGLIVE 1wa3A 21 :VEEAKEKALAVFEGGVHLIEIT T0355 70 :GDVP 1wa3A 43 :FTVP T0355 100 :GVPVGINV 1wa3A 47 :DADTVIKE T0355 108 :LANAPIP 1wa3A 58 :LKEKGAI T0355 116 :FAIAK 1wa3A 65 :IGAGT T0355 122 :G 1wa3A 70 :V T0355 128 :RVNQWANA 1wa3A 71 :TSVEQCRK T0355 137 :VANEGFMEGRAAEA 1wa3A 79 :AVESGAEFIVSPHL T0355 154 :RSLLRAEHIKVFADSHVK 1wa3A 93 :DEEISQFCKEKGVFYMPG T0355 177 :ITADRSIDELTR 1wa3A 111 :VMTPTELVKAMK T0355 193 :FDADGVIAT 1wa3A 123 :LGHTILKLF T0355 208 :SASLEEIEEIGAAT 1wa3A 135 :VVGPQFVKAMKGPF T0355 222 :HLPLLVGSGVNEGNIVEILKR 1wa3A 150 :NVKFVPTGGVNLDNVCEWFKA T0355 243 :TSGVIVASS 1wa3A 172 :VLAVGVGSA T0355 254 :EG 1wa3A 183 :KG T0355 259 :WNPVELARVRSFVAAARP 1wa3A 185 :TPDEVREKAKAFVEKIRG Number of specific fragments extracted= 18 number of extra gaps= 1 total=1704 Number of alignments=104 # 1wa3A read from 1wa3A/merged-good-all-a2m # found chain 1wa3A in template set Warning: unaligning (T0355)N7 because first residue in template chain is (1wa3A)K2 Warning: unaligning (T0355)L252 because of BadResidue code NON_PLANAR_PEPTIDE in next template residue (1wa3A)V182 Warning: unaligning (T0355)K253 because of BadResidue code NON_PLANAR_PEPTIDE at template residue (1wa3A)V182 T0355 8 :AANAIQEI 1wa3A 3 :MEELFKKH T0355 21 :ALIGMIHCP 1wa3A 11 :KIVAVLRAN T0355 41 :SMDA 1wa3A 20 :SVEE T0355 49 :CMRDAERLIEGGMHGLIVENHG 1wa3A 24 :AKEKALAVFEGGVHLIEITFTV T0355 81 :GP 1wa3A 46 :PD T0355 88 :MSVVTDRIVRTA 1wa3A 48 :ADTVIKELSFLK T0355 100 :GVPVGIN 1wa3A 62 :GAIIGAG T0355 111 :APIPAFAIAKAGGAKFIRV 1wa3A 71 :TSVEQCRKAVESGAEFIVS T0355 139 :N 1wa3A 90 :P T0355 142 :FMEG 1wa3A 91 :HLDE T0355 149 :EAMRYRSLLR 1wa3A 95 :EISQFCKEKG T0355 162 :IKVFADSHV 1wa3A 105 :VFYMPGVMT T0355 184 :DELTRDLAFFDADGVIA 1wa3A 114 :PTELVKAMKLGHTILKL T0355 210 :SLEEIEEIGA 1wa3A 137 :GPQFVKAMKG T0355 220 :ATHLPLLVGSGVNEGNIVEILKR 1wa3A 148 :FPNVKFVPTGGVNLDNVCEWFKA T0355 243 :TSGVIVASS 1wa3A 172 :VLAVGVGSA T0355 254 :E 1wa3A 183 :K T0355 262 :VELARVRSFVAAARPGLEA 1wa3A 184 :GTPDEVREKAKAFVEKIRG Number of specific fragments extracted= 18 number of extra gaps= 1 total=1722 Number of alignments=105 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vc4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0355 read from 1vc4A/merged-good-all-a2m # 1vc4A read from 1vc4A/merged-good-all-a2m # found chain 1vc4A in training set T0355 3 :TISDNAA 1vc4A 27 :PLPEPPS T0355 10 :NAIQEIFGRSKALIGMIHCPAFPGAPRYRNASMD 1vc4A 35 :PSFKEALLRPGLSVIAEVKRQSPSEGLIREVDPV T0355 51 :RDAERLIEGGMHGLIVENHGDV 1vc4A 69 :EAALAYARGGARAVSVLTEPHR T0355 74 :FS 1vc4A 91 :FG T0355 96 :VR 1vc4A 93 :GS T0355 102 :PVGINVLANAPIPAFAIAKAG 1vc4A 95 :LLDLKRVREAVDLPLLRKDFV T0355 127 :I 1vc4A 116 :V T0355 129 :VNQWAN 1vc4A 117 :DPFMLE T0355 136 :YVANEGFMEGRAA 1vc4A 123 :EARAFGASAALLI T0355 149 :E 1vc4A 141 :E T0355 155 :SLLRAEHIKVFADSH 1vc4A 148 :EEARRLGLEALVEVH T0355 173 :GAHAIT 1vc4A 163 :TERELE T0355 182 :SIDEL 1vc4A 169 :IALEA T0355 189 :DLAFFDADG 1vc4A 174 :GAEVLGINN T0355 202 :GQRTGNSASLEEIEEIGAA 1vc4A 183 :RDLATLHINLETAPRLGRL T0355 221 :THLPLLVGSGV 1vc4A 207 :FGGVLVAESGY T0355 232 :NEGNIVEILKRTSGVIVASSLKEGGV 1vc4A 219 :RKEELKALEGLFDAVLIGTSLMRAPD T0355 263 :ELARVRSFV 1vc4A 245 :LEAALRELV Number of specific fragments extracted= 18 number of extra gaps= 0 total=1740 Number of alignments=106 # 1vc4A read from 1vc4A/merged-good-all-a2m # found chain 1vc4A in training set T0355 9 :ANAIQEIFGRSKALIGMIHCPAFPGAPRYRNASMD 1vc4A 34 :VPSFKEALLRPGLSVIAEVKRQSPSEGLIREVDPV T0355 51 :RDAERLIEGGMHGLIVE 1vc4A 69 :EAALAYARGGARAVSVL T0355 74 :FSKPDDIGP 1vc4A 86 :TEPHRFGGS T0355 102 :PVGINVLANAPIPAFAI 1vc4A 95 :LLDLKRVREAVDLPLLR T0355 124 :AKF 1vc4A 112 :KDF T0355 127 :IR 1vc4A 116 :VD T0355 130 :NQWANA 1vc4A 118 :PFMLEE T0355 137 :VANEGFMEGRA 1vc4A 124 :ARAFGASAALL T0355 148 :AEAM 1vc4A 136 :VALL T0355 152 :RYRSLLRAEHIKVFADSHVKHGA 1vc4A 141 :ELTGAYLEEARRLGLEALVEVHT T0355 180 :DRSIDELTR 1vc4A 164 :ERELEIALE T0355 193 :FDADGVIATG 1vc4A 173 :AGAEVLGINN T0355 203 :QRTGNSASLEEIEE 1vc4A 184 :DLATLHINLETAPR T0355 217 :IGAAT 1vc4A 202 :ARKRG T0355 222 :HLPLLVGSGV 1vc4A 208 :GGVLVAESGY T0355 232 :NEGNIVEILKRTSGVIVASSLKEGGV 1vc4A 219 :RKEELKALEGLFDAVLIGTSLMRAPD T0355 263 :ELARVRSFV 1vc4A 245 :LEAALRELV Number of specific fragments extracted= 17 number of extra gaps= 0 total=1757 Number of alignments=107 # 1vc4A read from 1vc4A/merged-good-all-a2m # found chain 1vc4A in training set T0355 5 :SD 1vc4A 35 :PS T0355 12 :IQEIFGRSKALIGMIHCPAFPGAPRYRNAS 1vc4A 37 :FKEALLRPGLSVIAEVKRQSPSEGLIREVD T0355 49 :CMRDAERLIEGGMHGLIVENHGDVP 1vc4A 67 :PVEAALAYARGGARAVSVLTEPHRF T0355 79 :DIGPET 1vc4A 92 :GGSLLD T0355 92 :TDRIVRTAGVPVGINVLANAPI 1vc4A 98 :LKRVREAVDLPLLRKDFVVDPF T0355 115 :AFAIAKAGGAKFIRV 1vc4A 120 :MLEEARAFGASAALL T0355 134 :NAYV 1vc4A 135 :IVAL T0355 143 :MEGRAAEAMRYRSLLR 1vc4A 139 :LGELTGAYLEEARRLG T0355 162 :IKVFADSHV 1vc4A 155 :LEALVEVHT T0355 184 :DELTRDLAFFDADGVIATG 1vc4A 164 :ERELEIALEAGAEVLGINN T0355 203 :QRTGNSASLEEIEEIGA 1vc4A 184 :DLATLHINLETAPRLGR T0355 220 :ATHLPLLVGSGV 1vc4A 206 :GFGGVLVAESGY T0355 232 :NEGNIVEILKRTSGVIVASSLKEGGV 1vc4A 219 :RKEELKALEGLFDAVLIGTSLMRAPD T0355 264 :LARVRSFV 1vc4A 246 :EAALRELV Number of specific fragments extracted= 14 number of extra gaps= 0 total=1771 Number of alignments=108 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gjlA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2gjlA expands to /projects/compbio/data/pdb/2gjl.pdb.gz 2gjlA:# T0355 read from 2gjlA/merged-good-all-a2m # 2gjlA read from 2gjlA/merged-good-all-a2m # adding 2gjlA to template set # found chain 2gjlA in template set T0355 11 :AIQEIFGRSKALIGMIHCP 2gjlA 7 :RFTETFGVEHPIMQGGMQW T0355 39 :NAS 2gjlA 26 :VGR T0355 50 :MRDAERLIEGGM 2gjlA 29 :AEMAAAVANAGG T0355 65 :IVENHGD 2gjlA 43 :TLSALTQ T0355 79 :DIGPETSAFMSVVTDR 2gjlA 50 :PSPEALAAEIARCREL T0355 111 :APIPAFAIAKAGGAKF 2gjlA 66 :TDRPFGVNLTLLPTQK T0355 127 :IRVNQWAN 2gjlA 83 :VPYAEYRA T0355 136 :YVANEGFMEGRAAEAMRYR 2gjlA 91 :AIIEAGIRVVETAGNDPGE T0355 155 :SLLRAEHIKVFADS 2gjlA 112 :AEFRRHGVKVIHKC T0355 172 :HGAHAIT 2gjlA 126 :TAVRHAL T0355 182 :SIDEL 2gjlA 133 :KAERL T0355 189 :DLAFFDADGVIATGQRTGNSASLE 2gjlA 138 :GVDAVSIDGFECAGHPGEDDIPGL T0355 213 :EIEEIGAATHLPLLVGSGV 2gjlA 163 :LLPAAANRLRVPIIASGGF T0355 232 :NEGNIVEILKR 2gjlA 183 :DGRGLVAALAL T0355 243 :TSGVIVASSLKE 2gjlA 195 :ADAINMGTRFLA T0355 256 :GVWW 2gjlA 207 :TREC T0355 260 :NPVELARVRS 2gjlA 213 :HPAVKAAIRA Number of specific fragments extracted= 17 number of extra gaps= 0 total=1788 Number of alignments=109 # 2gjlA read from 2gjlA/merged-good-all-a2m # found chain 2gjlA in template set T0355 11 :AIQEIFGRSKALIGM 2gjlA 7 :RFTETFGVEHPIMQG T0355 30 :AFPGAPR 2gjlA 22 :GMQWVGR T0355 50 :MRDAERLIEGG 2gjlA 29 :AEMAAAVANAG T0355 61 :M 2gjlA 42 :A T0355 65 :IVE 2gjlA 43 :TLS T0355 69 :HGDVP 2gjlA 46 :ALTQP T0355 80 :IGPETSAFMSVVTD 2gjlA 51 :SPEALAAEIARCRE T0355 108 :LANAPIPAFA 2gjlA 65 :LTDRPFGVNL T0355 120 :KAGGAKF 2gjlA 75 :TLLPTQK T0355 127 :IRVNQWANA 2gjlA 83 :VPYAEYRAA T0355 137 :VANEGFMEGRA 2gjlA 92 :IIEAGIRVVET T0355 148 :AEAM 2gjlA 104 :GNDP T0355 152 :RYRSLL 2gjlA 109 :EHIAEF T0355 162 :IKVFADSHVKHGA 2gjlA 115 :RRHGVKVIHKCTA T0355 180 :DRSIDELTR 2gjlA 128 :VRHALKAER T0355 193 :FDADGVIATG 2gjlA 137 :LGVDAVSIDG T0355 203 :QRTGNSASL 2gjlA 152 :HPGEDDIPG T0355 212 :EEIEEIGAATHLPLLVGSGV 2gjlA 162 :VLLPAAANRLRVPIIASGGF T0355 232 :NEGNIVEILKR 2gjlA 183 :DGRGLVAALAL T0355 243 :TSGVIVASSLKE 2gjlA 195 :ADAINMGTRFLA T0355 255 :GGVWWNPVELARVRS 2gjlA 208 :RECPIHPAVKAAIRA Number of specific fragments extracted= 21 number of extra gaps= 0 total=1809 Number of alignments=110 # 2gjlA read from 2gjlA/merged-good-all-a2m # found chain 2gjlA in template set T0355 11 :AIQEIFGRSKALIGM 2gjlA 7 :RFTETFGVEHPIMQG T0355 33 :GAPRYRN 2gjlA 22 :GMQWVGR T0355 50 :MRDAERLIEGGM 2gjlA 29 :AEMAAAVANAGG T0355 65 :IVENHGD 2gjlA 43 :TLSALTQ T0355 80 :IGPETSA 2gjlA 50 :PSPEALA T0355 90 :VVTDRIVRTAGVPVGINVLAN 2gjlA 57 :AEIARCRELTDRPFGVNLTLL T0355 112 :PIPAFAIAKAGGAKFIRVNQ 2gjlA 85 :YAEYRAAIIEAGIRVVETAG T0355 141 :GFMEGRAAEAMR 2gjlA 105 :NDPGEHIAEFRR T0355 160 :EHIKVFADSHV 2gjlA 117 :HGVKVIHKCTA T0355 184 :DELTRDLAFFDADGVIATGQRT 2gjlA 128 :VRHALKAERLGVDAVSIDGFEC T0355 206 :GNSAS 2gjlA 151 :GHPGE T0355 211 :LEEIEEIGAATHLPLLVGSGV 2gjlA 161 :LVLLPAAANRLRVPIIASGGF T0355 232 :NEGNIVEILKR 2gjlA 183 :DGRGLVAALAL T0355 243 :TSGVIVASSL 2gjlA 195 :ADAINMGTRF T0355 258 :WWNPVEL 2gjlA 208 :RECPIHP T0355 269 :SFVAAARP 2gjlA 215 :AVKAAIRA Number of specific fragments extracted= 16 number of extra gaps= 0 total=1825 Number of alignments=111 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vizA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vizA expands to /projects/compbio/data/pdb/1viz.pdb.gz 1vizA:Skipped atom 384, because occupancy 0.350 <= existing 0.650 in 1vizA Skipped atom 386, because occupancy 0.350 <= existing 0.650 in 1vizA Skipped atom 388, because occupancy 0.350 <= existing 0.650 in 1vizA Skipped atom 390, because occupancy 0.350 <= existing 0.650 in 1vizA Skipped atom 411, because occupancy 0.350 <= existing 0.650 in 1vizA Skipped atom 413, because occupancy 0.350 <= existing 0.650 in 1vizA Skipped atom 415, because occupancy 0.350 <= existing 0.650 in 1vizA Skipped atom 473, because occupancy 0.350 <= existing 0.650 in 1vizA Skipped atom 475, because occupancy 0.350 <= existing 0.650 in 1vizA Skipped atom 953, because occupancy 0.350 <= existing 0.650 in 1vizA Skipped atom 955, because occupancy 0.350 <= existing 0.650 in 1vizA Skipped atom 957, because occupancy 0.350 <= existing 0.650 in 1vizA Skipped atom 959, because occupancy 0.350 <= existing 0.650 in 1vizA Skipped atom 1474, because occupancy 0.350 <= existing 0.650 in 1vizA Skipped atom 1476, because occupancy 0.350 <= existing 0.650 in 1vizA Skipped atom 1478, because occupancy 0.350 <= existing 0.650 in 1vizA # T0355 read from 1vizA/merged-good-all-a2m # 1vizA read from 1vizA/merged-good-all-a2m # adding 1vizA to template set # found chain 1vizA in template set Warning: unaligning (T0355)N68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vizA)T44 Warning: unaligning (T0355)I80 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vizA)T44 Warning: unaligning (T0355)A119 because of BadResidue code BAD_PEPTIDE in next template residue (1vizA)S83 Warning: unaligning (T0355)K120 because of BadResidue code BAD_PEPTIDE at template residue (1vizA)S83 Warning: unaligning (T0355)A195 because of BadResidue code BAD_PEPTIDE in next template residue (1vizA)E160 Warning: unaligning (T0355)D196 because of BadResidue code BAD_PEPTIDE at template residue (1vizA)E160 T0355 28 :CPAFPGAPRYRNASM 1vizA 1 :LYDVTEWKHVFKLDP T0355 43 :D 1vizA 21 :D T0355 51 :RDAERLIEGGMHGLIVE 1vizA 22 :EQLEILCESGTDAVIIG T0355 81 :GPETSAFMSVVTDRIVRTAGVPVGINVLANAPIPAFA 1vizA 45 :EDNVLRMMSKVRRFLVPCVLEVSAIEAIVPGFDLYFI T0355 121 :AGGAK 1vizA 84 :VLNSK T0355 126 :F 1vizA 92 :W T0355 127 :IRVNQWANA 1vizA 94 :VGMHQKAMK T0355 136 :YVANEGFMEGRAAEAMRYRSLLRAEH 1vizA 107 :LMSMEEIVAEGYCIANPDCKAAALTE T0355 168 :SHVKHGAHAIT 1vizA 133 :ADADLNMDDIV T0355 182 :SIDELTR 1vizA 144 :AYARVSE T0355 189 :DLAFFD 1vizA 153 :QLPIFY T0355 197 :G 1vizA 161 :Y T0355 205 :TGNSASLEEIEEIGAATH 1vizA 162 :SGVLGDIEAVKKTKAVLE T0355 223 :LPLLVGSGV 1vizA 181 :STLFYGGGI T0355 232 :NEGNIVEILKRTSGVIVASSLKEG 1vizA 191 :DAETAKQYAEHADVIVVGNAVYED T0355 264 :LARVRSFVAAAR 1vizA 215 :FDRALKTVAAVK Number of specific fragments extracted= 16 number of extra gaps= 2 total=1841 Number of alignments=112 # 1vizA read from 1vizA/merged-good-all-a2m # found chain 1vizA in template set Warning: unaligning (T0355)N68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vizA)T44 Warning: unaligning (T0355)P73 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vizA)T44 Warning: unaligning (T0355)I118 because of BadResidue code BAD_PEPTIDE in next template residue (1vizA)S83 Warning: unaligning (T0355)A119 because of BadResidue code BAD_PEPTIDE at template residue (1vizA)S83 Warning: unaligning (T0355)A200 because of BadResidue code BAD_PEPTIDE in next template residue (1vizA)E160 Warning: unaligning (T0355)T201 because of BadResidue code BAD_PEPTIDE at template residue (1vizA)E160 T0355 28 :CPAFPGAPRYRNASMD 1vizA 1 :LYDVTEWKHVFKLDPN T0355 51 :RDAERLIEGGMHGLIVE 1vizA 22 :EQLEILCESGTDAVIIG T0355 81 :GPETSAFMSVVTDRIVRTAGVPVGINVLANAPIPAFA 1vizA 45 :EDNVLRMMSKVRRFLVPCVLEVSAIEAIVPGFDLYFI T0355 120 :KAG 1vizA 84 :VLN T0355 123 :GAKF 1vizA 89 :NADW T0355 127 :IRVNQWANAY 1vizA 94 :VGMHQKAMKE T0355 137 :VANEGFMEGRAAEAM 1vizA 108 :MSMEEIVAEGYCIAN T0355 152 :RY 1vizA 124 :DC T0355 159 :AEHIKVFADS 1vizA 126 :KAAALTEADA T0355 177 :ITADRSIDELTRDLAFFDADGVI 1vizA 136 :DLNMDDIVAYARVSELLQLPIFY T0355 204 :RTGNSASLEEIEEIGAAT 1vizA 161 :YSGVLGDIEAVKKTKAVL T0355 222 :HLPLLVGSGV 1vizA 180 :TSTLFYGGGI T0355 232 :NEGNIVEILKRTSGVIVASSLKEG 1vizA 191 :DAETAKQYAEHADVIVVGNAVYED T0355 264 :LARVRSFVAAARP 1vizA 215 :FDRALKTVAAVKG Number of specific fragments extracted= 14 number of extra gaps= 2 total=1855 Number of alignments=113 # 1vizA read from 1vizA/merged-good-all-a2m # found chain 1vizA in template set Warning: unaligning (T0355)N68 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vizA)T44 Warning: unaligning (T0355)G81 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vizA)T44 Warning: unaligning (T0355)N130 because of BadResidue code BAD_PEPTIDE in next template residue (1vizA)S83 Warning: unaligning (T0355)Q131 because of BadResidue code BAD_PEPTIDE at template residue (1vizA)S83 Warning: unaligning (T0355)A200 because of BadResidue code BAD_PEPTIDE in next template residue (1vizA)E160 Warning: unaligning (T0355)T201 because of BadResidue code BAD_PEPTIDE at template residue (1vizA)E160 T0355 24 :GMIHCPA 1vizA 9 :HVFKLDP T0355 37 :YRNASMD 1vizA 16 :NKDLPDE T0355 52 :DAERLIEGGMHGLIVE 1vizA 23 :QLEILCESGTDAVIIG T0355 82 :PETSA 1vizA 45 :EDNVL T0355 90 :VVTDRIVRT 1vizA 50 :RMMSKVRRF T0355 100 :GVPVGINV 1vizA 59 :LVPCVLEV T0355 123 :GAKFIRV 1vizA 75 :GFDLYFI T0355 132 :WANA 1vizA 84 :VLNS T0355 138 :ANEGFMEGRAAEAMRYRS 1vizA 88 :KNADWIVGMHQKAMKEYG T0355 156 :LLRAEHIKVFADSHVKHGA 1vizA 107 :LMSMEEIVAEGYCIANPDC T0355 175 :HAITADRSIDELTR 1vizA 131 :TEADADLNMDDIVA T0355 189 :DLAFFDADGVI 1vizA 148 :VSELLQLPIFY T0355 204 :RTGNSASLEEIEEIGA 1vizA 161 :YSGVLGDIEAVKKTKA T0355 220 :ATHLPLLVGSGV 1vizA 178 :LETSTLFYGGGI T0355 232 :NEGNIVEILKRTSGVIVASSL 1vizA 191 :DAETAKQYAEHADVIVVGNAV T0355 263 :ELARVRSFVAAAR 1vizA 214 :DFDRALKTVAAVK Number of specific fragments extracted= 16 number of extra gaps= 2 total=1871 Number of alignments=114 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1rd5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1rd5A expands to /projects/compbio/data/pdb/1rd5.pdb.gz 1rd5A:Skipped atom 100, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 102, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 862, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 864, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 866, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 868, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 870, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1030, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1032, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1034, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1742, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1744, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1746, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1748, because occupancy 0.500 <= existing 0.500 in 1rd5A Skipped atom 1750, because occupancy 0.500 <= existing 0.500 in 1rd5A # T0355 read from 1rd5A/merged-good-all-a2m # 1rd5A read from 1rd5A/merged-good-all-a2m # adding 1rd5A to template set # found chain 1rd5A in template set Warning: unaligning (T0355)F126 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rd5A)F108 Warning: unaligning (T0355)I127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rd5A)S110 Warning: unaligning (T0355)R128 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rd5A)S110 Warning: unaligning (T0355)D167 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rd5A)T150 Warning: unaligning (T0355)S168 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rd5A)T150 Warning: unaligning (T0355)T201 because of BadResidue code BAD_PEPTIDE in next template residue (1rd5A)G180 Warning: unaligning (T0355)G202 because of BadResidue code BAD_PEPTIDE at template residue (1rd5A)G180 T0355 9 :ANAIQEIFGR 1rd5A 6 :SDTMAALMAK T0355 29 :PAFPGAPRYRNASMD 1rd5A 16 :GKTAFIPYITAGDPD T0355 46 :YDACMRDAERLIEGGMHGLIVE 1rd5A 31 :LATTAEALRLLDGCGADVIELG T0355 72 :VPFSKPDDIGPETSAFMSVVTDRIVRTAGVPVGINVLANAPIPAFAIAKAGGAK 1rd5A 53 :VPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPI T0355 129 :VN 1rd5A 111 :LA T0355 136 :YVANEGFMEGRAAEAMRYR 1rd5A 113 :KMKEAGVHGLIVPDLPYVA T0355 155 :SLLRAEHIKVFA 1rd5A 137 :SEAKNNNLELVL T0355 169 :HVKHGAHAIT 1rd5A 151 :TPAIPEDRMK T0355 182 :SIDELTRDLAF 1rd5A 161 :EITKASEGFVY T0355 194 :DADGVIA 1rd5A 172 :LVSVNGV T0355 203 :QRTGNSASL 1rd5A 181 :PRANVNPRV T0355 212 :EEIEEIGAATHLPLLVGSGV 1rd5A 191 :SLIQEVKKVTNKPVAVGFGI T0355 232 :NEGNIVEILKR 1rd5A 212 :KPEHVKQIAQW T0355 243 :TSGVIVASSLKEGGVWW 1rd5A 224 :ADGVIIGSAMVRQLGEA T0355 260 :NPVELARVRSFVAAARPGL 1rd5A 243 :PKQGLRRLEEYARGMKNAL Number of specific fragments extracted= 15 number of extra gaps= 4 total=1886 Number of alignments=115 # 1rd5A read from 1rd5A/merged-good-all-a2m # found chain 1rd5A in template set Warning: unaligning (T0355)F126 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rd5A)F108 Warning: unaligning (T0355)I127 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rd5A)S110 Warning: unaligning (T0355)R128 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rd5A)S110 Warning: unaligning (T0355)K171 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rd5A)T150 Warning: unaligning (T0355)H172 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rd5A)T150 Warning: unaligning (T0355)T201 because of BadResidue code BAD_PEPTIDE in next template residue (1rd5A)G180 Warning: unaligning (T0355)G202 because of BadResidue code BAD_PEPTIDE at template residue (1rd5A)G180 T0355 8 :AANAIQEIFGRSKA 1rd5A 5 :VSDTMAALMAKGKT T0355 22 :LIGMIHC 1rd5A 20 :FIPYITA T0355 40 :ASMD 1rd5A 27 :GDPD T0355 46 :YDACMRDAERLIEGGMHGLIVE 1rd5A 31 :LATTAEALRLLDGCGADVIELG T0355 72 :VPFSKPDDIGPETSAFMSVVTDRIVRTAGVPVGINVLANAPIPAFAIAKAGGAK 1rd5A 53 :VPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPI T0355 129 :VNQ 1rd5A 111 :LAK T0355 137 :VANEGFMEGRAAEAM 1rd5A 114 :MKEAGVHGLIVPDLP T0355 152 :RYRSLLRAEHIKVFADSHV 1rd5A 130 :VAAHSLWSEAKNNNLELVL T0355 173 :GA 1rd5A 151 :TP T0355 177 :ITADRSIDELTRDLAFFDA 1rd5A 153 :AIPEDRMKEITKASEGFVY T0355 196 :DGVIA 1rd5A 174 :SVNGV T0355 203 :QRTGNSASL 1rd5A 181 :PRANVNPRV T0355 212 :EEIEEIGAATHLPLLVGSGV 1rd5A 191 :SLIQEVKKVTNKPVAVGFGI T0355 232 :NEGNIVEILKR 1rd5A 212 :KPEHVKQIAQW T0355 243 :TSGVIVASSLKEGGVWW 1rd5A 224 :ADGVIIGSAMVRQLGEA T0355 260 :NPVELARVRSFVAAARPGL 1rd5A 243 :PKQGLRRLEEYARGMKNAL Number of specific fragments extracted= 16 number of extra gaps= 4 total=1902 Number of alignments=116 # 1rd5A read from 1rd5A/merged-good-all-a2m # found chain 1rd5A in template set Warning: unaligning (T0355)I113 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rd5A)F108 Warning: unaligning (T0355)V164 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1rd5A)T150 Warning: unaligning (T0355)F165 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1rd5A)T150 Warning: unaligning (T0355)T205 because of BadResidue code BAD_PEPTIDE in next template residue (1rd5A)G180 Warning: unaligning (T0355)G206 because of BadResidue code BAD_PEPTIDE at template residue (1rd5A)G180 T0355 8 :AANAIQEIFGRSKALIGMIHCP 1rd5A 5 :VSDTMAALMAKGKTAFIPYITA T0355 33 :GAP 1rd5A 27 :GDP T0355 41 :S 1rd5A 30 :D T0355 46 :YDACMRDAERLIEGGMHGLIVENHGDVP 1rd5A 31 :LATTAEALRLLDGCGADVIELGVPCSDP T0355 78 :DDIGPETSAFMS 1rd5A 59 :YIDGPIIQASVA T0355 90 :VVTDRIVRTA 1rd5A 81 :AVLEMLREVT T0355 100 :GVPVGINVLANAP 1rd5A 94 :SCPVVLLSYYKPI T0355 119 :AKAGGAKFIRV 1rd5A 114 :MKEAGVHGLIV T0355 140 :EGFMEGRAAEAMRYRSLLRAEHIK 1rd5A 125 :PDLPYVAAHSLWSEAKNNNLELVL T0355 178 :TADRSIDELTRDLAFFDADGVIATGQR 1rd5A 151 :TPAIPEDRMKEITKASEGFVYLVSVNG T0355 207 :NSAS 1rd5A 181 :PRAN T0355 211 :LEEIEEIGAATHLPLLVGSGV 1rd5A 190 :ESLIQEVKKVTNKPVAVGFGI T0355 232 :NEGNIVEILKR 1rd5A 212 :KPEHVKQIAQW T0355 243 :TSGVIVASSL 1rd5A 224 :ADGVIIGSAM T0355 263 :ELAR 1rd5A 242 :SPKQ T0355 267 :VRSFVAAARPGLEAL 1rd5A 247 :LRRLEEYARGMKNAL Number of specific fragments extracted= 16 number of extra gaps= 3 total=1918 Number of alignments=117 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1x1zA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1x1zA expands to /projects/compbio/data/pdb/1x1z.pdb.gz 1x1zA:Skipped atom 91, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 93, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 99, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 101, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 103, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 105, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 107, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 109, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 111, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 113, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 115, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 223, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 225, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 235, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 237, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 239, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 241, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 243, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 245, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 247, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 249, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 251, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 253, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 255, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 257, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 259, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 261, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 263, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 265, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 267, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 605, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 607, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 609, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 611, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 613, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 709, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 711, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 717, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 719, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 721, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 723, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 725, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 727, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 729, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 731, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 744, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 746, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 748, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 750, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 752, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 754, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 756, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 758, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 760, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 762, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 764, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 766, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 768, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 770, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 772, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 774, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 776, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 778, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 780, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 782, because occupancy 0.500 <= existing 0.500 in 1x1zA Skipped atom 784, because occupancy 0.500 <= existing 0.500 in 1x1zA # T0355 read from 1x1zA/merged-good-all-a2m # 1x1zA read from 1x1zA/merged-good-all-a2m # adding 1x1zA to template set # found chain 1x1zA in template set Warning: unaligning (T0355)G277 because last residue in template chain is (1x1zA)L225 T0355 32 :PGAPRYRNAS 1x1zA 14 :RLILAMDLMN T0355 46 :YDACMRDAERL 1x1zA 24 :RDDALRVTGEV T0355 61 :MHGLIVE 1x1zA 38 :IDTVKIG T0355 82 :PETSA 1x1zA 45 :YPLVL T0355 93 :DRI 1x1zA 50 :SEG T0355 102 :PVGINVLANA 1x1zA 53 :MDIIAEFRKR T0355 112 :PIPAFAIAKAGG 1x1zA 64 :GCRIIADFKVAD T0355 128 :RVNQWAN 1x1zA 79 :TNEKICR T0355 136 :YVANEGFMEGRAAEAM 1x1zA 86 :ATFKAGADAIIVHGFP T0355 152 :RYRSLLRAEHIKVFADSHV 1x1zA 108 :ACLNVAEEMGREVFLLTEM T0355 172 :HGAHAIT 1x1zA 127 :SHPGAEM T0355 182 :SIDELTR 1x1zA 134 :FIQGAAD T0355 189 :DLAF 1x1zA 150 :GVKN T0355 194 :DADGV 1x1zA 154 :YVGPS T0355 202 :G 1x1zA 159 :T T0355 210 :SLEEIEEIGAATH 1x1zA 160 :RPERLSRLREIIG T0355 223 :LPLLVGS 1x1zA 175 :SFLISPG T0355 230 :GVN 1x1zA 186 :GGD T0355 236 :IVEILKRTSGVIVASSLKEGGV 1x1zA 189 :PGETLRFADAIIVGRSIYLADN T0355 263 :ELARVRSFVAAARP 1x1zA 211 :PAAAAAGIIESIKD Number of specific fragments extracted= 20 number of extra gaps= 0 total=1938 Number of alignments=118 # 1x1zA read from 1x1zA/merged-good-all-a2m # found chain 1x1zA in template set Warning: unaligning (T0355)R18 because first residue in template chain is (1x1zA)V11 Warning: unaligning (T0355)G277 because last residue in template chain is (1x1zA)L225 T0355 19 :SKALIGMIHCPA 1x1zA 12 :MNRLILAMDLMN T0355 46 :YDACMRDAERLIE 1x1zA 24 :RDDALRVTGEVRE T0355 61 :MHGLIVE 1x1zA 38 :IDTVKIG T0355 88 :MSVVTDRI 1x1zA 45 :YPLVLSEG T0355 103 :VGINVLANAPIPAFAIAKAGGAKFIRVNQWANA 1x1zA 54 :DIIAEFRKRFGCRIIADFKVADIPETNEKICRA T0355 137 :VANEGFMEGRAAEAM 1x1zA 87 :TFKAGADAIIVHGFP T0355 152 :RYRSLLRAEHIKVFADSHVKHGA 1x1zA 104 :DSVRACLNVAEEMGREVFLLTEM T0355 177 :ITAD 1x1zA 127 :SHPG T0355 181 :RSIDELTRDLAFFDA 1x1zA 137 :GAADEIARMGVDLGV T0355 197 :GVIAT 1x1zA 153 :NYVGP T0355 208 :SASLEEIEEIGAAT 1x1zA 158 :STRPERLSRLREII T0355 222 :HLPLLVGS 1x1zA 174 :DSFLISPG T0355 230 :GVNE 1x1zA 186 :GGDP T0355 237 :VEILKRTSGVIVASSLKEG 1x1zA 190 :GETLRFADAIIVGRSIYLA T0355 261 :PVELARVRSFVAAARP 1x1zA 209 :DNPAAAAAGIIESIKD Number of specific fragments extracted= 15 number of extra gaps= 0 total=1953 Number of alignments=119 # 1x1zA read from 1x1zA/merged-good-all-a2m # found chain 1x1zA in template set Warning: unaligning (T0355)G277 because last residue in template chain is (1x1zA)L225 T0355 21 :ALIGM 1x1zA 15 :LILAM T0355 27 :HC 1x1zA 20 :DL T0355 40 :ASMDAI 1x1zA 22 :MNRDDA T0355 50 :MRDAERLIEG 1x1zA 28 :LRVTGEVREY T0355 61 :MHGLIVE 1x1zA 38 :IDTVKIG T0355 83 :ETSA 1x1zA 46 :PLVL T0355 91 :VTDRIVRTAGVPVGINVLANA 1x1zA 55 :IIAEFRKRFGCRIIADFKVAD T0355 112 :PIPAFAIAKAGGAKFIRVNQW 1x1zA 80 :NEKICRATFKAGADAIIVHGF T0355 142 :FMEGRAAEAMRYRSLLRA 1x1zA 101 :PGADSVRACLNVAEEMGR T0355 163 :KVFADSHV 1x1zA 119 :EVFLLTEM T0355 173 :GAHAITADR 1x1zA 127 :SHPGAEMFI T0355 182 :SIDELTRDLAFFDADGVI 1x1zA 138 :AADEIARMGVDLGVKNYV T0355 206 :GNSASLEEIEEIGA 1x1zA 156 :GPSTRPERLSRLRE T0355 220 :ATHLP 1x1zA 172 :GQDSF T0355 226 :LVGSGV 1x1zA 177 :LISPGV T0355 236 :IVEILKRTSGVIVASSLKEGGV 1x1zA 189 :PGETLRFADAIIVGRSIYLADN T0355 264 :LARVRSFVAAARP 1x1zA 212 :AAAAAGIIESIKD Number of specific fragments extracted= 17 number of extra gaps= 0 total=1970 Number of alignments=120 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gox/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gox expands to /projects/compbio/data/pdb/1gox.pdb.gz 1gox:Warning: there is no chain 1gox will retry with 1goxA # T0355 read from 1gox/merged-good-all-a2m # 1gox read from 1gox/merged-good-all-a2m # adding 1gox to template set # found chain 1gox in template set Warning: unaligning (T0355)A99 because of BadResidue code BAD_PEPTIDE in next template residue (1gox)W108 Warning: unaligning (T0355)G100 because of BadResidue code BAD_PEPTIDE at template residue (1gox)W108 Warning: unaligning (T0355)A119 because of BadResidue code BAD_PEPTIDE in next template residue (1gox)Y129 Warning: unaligning (T0355)K120 because of BadResidue code BAD_PEPTIDE at template residue (1gox)Y129 Warning: unaligning (T0355)R242 because of BadResidue code BAD_PEPTIDE in next template residue (1gox)G245 Warning: unaligning (T0355)L252 because of BadResidue code BAD_PEPTIDE in next template residue (1gox)A256 Warning: unaligning (T0355)K253 because of BadResidue code BAD_PEPTIDE at template residue (1gox)A256 T0355 64 :LIVE 1gox 73 :IMIA T0355 73 :PFSKPDDIGPE 1gox 77 :PTAMQKMAHPE T0355 84 :TSAFMSVVTDRIVR 1gox 89 :EYATARAASAAGTI T0355 98 :T 1gox 106 :S T0355 101 :VPVGINVLAN 1gox 109 :ATSSVEEVAS T0355 111 :APIPAFAI 1gox 120 :GPGIRFFQ T0355 121 :AGG 1gox 130 :VYK T0355 129 :VNQWAN 1gox 137 :VAQLVR T0355 136 :YVANEGFMEGRA 1gox 143 :RAERAGFKAIAL T0355 148 :AEAMRY 1gox 156 :VDTPRL T0355 206 :GNSASLEEIEEIGAATHLPLLVGSGVNEGNIVEILK 1gox 208 :DRSLSWKDVAWLQTITSLPILVKGVITAEDARLAVQ T0355 243 :TSGVIVASS 1gox 246 :AAGIIVSNH T0355 254 :EGGVWWN 1gox 257 :RQLDYVP T0355 262 :V 1gox 265 :T T0355 264 :LARVRSFVAAA 1gox 266 :IMALEEVVKAA Number of specific fragments extracted= 15 number of extra gaps= 4 total=1985 Number of alignments=121 # 1gox read from 1gox/merged-good-all-a2m # found chain 1gox in template set Warning: unaligning (T0355)M25 because of BadResidue code BAD_PEPTIDE in next template residue (1gox)Y129 Warning: unaligning (T0355)I26 because of BadResidue code BAD_PEPTIDE at template residue (1gox)Y129 Warning: unaligning (T0355)P114 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gox)G198 Warning: unaligning (T0355)K120 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1gox)G198 Warning: unaligning (T0355)F193 because of BadResidue code BAD_PEPTIDE in next template residue (1gox)G245 Warning: unaligning (T0355)D194 because of BadResidue code BAD_PEPTIDE at template residue (1gox)G245 Warning: unaligning (T0355)G202 because of BadResidue code BAD_PEPTIDE in next template residue (1gox)A256 Warning: unaligning (T0355)Q203 because of BadResidue code BAD_PEPTIDE at template residue (1gox)A256 T0355 12 :IQEIFGRSKA 1gox 113 :VEEVASTGPG T0355 22 :LIG 1gox 125 :FFQ T0355 27 :HCPA 1gox 130 :VYKD T0355 46 :YDACMRDAERLIEGGMHGLIVE 1gox 134 :RNVVAQLVRRAERAGFKAIALT T0355 70 :GDVP 1gox 156 :VDTP T0355 79 :DIGP 1gox 160 :RLGR T0355 88 :MSVVTDRIVRT 1gox 164 :READIKNRFVL T0355 99 :AGVPV 1gox 176 :PFLTL T0355 107 :VLANAPI 1gox 181 :KNFEGID T0355 129 :VNQWANA 1gox 199 :LSSYVAG T0355 137 :VANEGFM 1gox 206 :QIDRSLS T0355 152 :RYRSLL 1gox 214 :KDVAWL T0355 162 :IKV 1gox 220 :QTI T0355 166 :ADSHVKHGA 1gox 223 :TSLPILVKG T0355 177 :ITADRSIDELTR 1gox 232 :VITAEDARLAVQ T0355 195 :ADGVIAT 1gox 246 :AAGIIVS T0355 204 :RTGNSAS 1gox 257 :RQLDYVP T0355 211 :L 1gox 265 :T T0355 212 :EEIEEIGAAT 1gox 267 :MALEEVVKAA T0355 223 :LPLLVGSGV 1gox 280 :IPVFLDGGV T0355 232 :NEGNIVEILKR 1gox 290 :RGTDVFKALAL T0355 243 :TSGVIVASSLKEGGV 1gox 302 :AAGVFIGRPVVFSLA T0355 261 :PVELARVRSFVAAARPGLEAL 1gox 317 :AEGEAGVKKVLQMMRDEFELT Number of specific fragments extracted= 23 number of extra gaps= 4 total=2008 Number of alignments=122 # 1gox read from 1gox/merged-good-all-a2m # found chain 1gox in template set Warning: unaligning (T0355)H27 because of BadResidue code BAD_PEPTIDE in next template residue (1gox)Y129 Warning: unaligning (T0355)C28 because of BadResidue code BAD_PEPTIDE at template residue (1gox)Y129 Warning: unaligning (T0355)V103 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1gox)G198 Warning: unaligning (T0355)G104 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1gox)G198 Warning: unaligning (T0355)F193 because of BadResidue code BAD_PEPTIDE in next template residue (1gox)G245 Warning: unaligning (T0355)D194 because of BadResidue code BAD_PEPTIDE at template residue (1gox)G245 Warning: unaligning (T0355)R204 because of BadResidue code BAD_PEPTIDE in next template residue (1gox)A256 Warning: unaligning (T0355)T205 because of BadResidue code BAD_PEPTIDE at template residue (1gox)A256 T0355 12 :IQEIFGRSKALIGMI 1gox 113 :VEEVASTGPGIRFFQ T0355 29 :P 1gox 130 :V T0355 37 :YRN 1gox 131 :YKD T0355 46 :YDACMRDAERLIEGGMHGLIVENHGDVP 1gox 134 :RNVVAQLVRRAERAGFKAIALTVDTPRL T0355 74 :FSKPDDIGPE 1gox 172 :FVLPPFLTLK T0355 97 :RTAGVP 1gox 182 :NFEGID T0355 134 :NAYVANEGFMEGRAAEAMRYR 1gox 203 :VAGQIDRSLSWKDVAWLQTIT T0355 161 :HIKVFADSHVK 1gox 224 :SLPILVKGVIT T0355 184 :DELTRDLAF 1gox 235 :AEDARLAVQ T0355 195 :ADGVIATGQ 1gox 246 :AAGIIVSNH T0355 206 :GNS 1gox 257 :RQL T0355 209 :ASLEEIEEIGA 1gox 264 :ATIMALEEVVK T0355 220 :ATHLPLLVGSGV 1gox 277 :QGRIPVFLDGGV T0355 232 :NEGNIVEIL 1gox 290 :RGTDVFKAL T0355 242 :RTSGVIVA 1gox 301 :GAAGVFIG T0355 263 :ELARVRSFVAAARPGLEAL 1gox 319 :GEAGVKKVLQMMRDEFELT Number of specific fragments extracted= 16 number of extra gaps= 4 total=2024 Number of alignments=123 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1h1yA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1h1yA expands to /projects/compbio/data/pdb/1h1y.pdb.gz 1h1yA:# T0355 read from 1h1yA/merged-good-all-a2m # 1h1yA read from 1h1yA/merged-good-all-a2m # adding 1h1yA to template set # found chain 1h1yA in template set Warning: unaligning (T0355)G277 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1h1yA)Q224 Warning: unaligning (T0355)L278 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1h1yA)Q224 T0355 33 :GAPRYRNASMD 1h1yA 8 :IAPSMLSSDFA T0355 48 :ACMRDAERLIEGGMHGLIVENHGDV 1h1yA 19 :NLAAEADRMVRLGADWLHMDIMDGH T0355 74 :FSKPDDIG 1h1yA 44 :FVPNLTIG T0355 82 :PETS 1h1yA 53 :PVIQ T0355 107 :VLANAPIPAFAIAKAGG 1h1yA 57 :SLRKHTKAYLDCHLMVT T0355 128 :RVNQWAN 1h1yA 74 :NPSDYVE T0355 136 :YVANEGFMEGRAA 1h1yA 81 :PLAKAGASGFTFH T0355 155 :SLLRAEHIKVFADSHVKHGAHAIT 1h1yA 106 :QSIKAKGMRPGVSLRPGTPVEEVF T0355 182 :SIDELTRDLAFFDA 1h1yA 130 :PLVEAENPVELVLV T0355 200 :AT 1h1yA 144 :MT T0355 202 :GQRTGNSASLEEIEEIGAATH 1h1yA 151 :GGQKFMPEMMEKVRALRKKYP T0355 223 :LPLLVGSGVNEGNIVEILKR 1h1yA 173 :LDIEVDGGLGPSTIDVAASA T0355 243 :TSGVIVASSLKEGGV 1h1yA 194 :ANCIVAGSSIFGAAE T0355 263 :ELARVRSFVAAARP 1h1yA 209 :PGEVISALRKSVEG Number of specific fragments extracted= 14 number of extra gaps= 1 total=2038 Number of alignments=124 # 1h1yA read from 1h1yA/merged-good-all-a2m # found chain 1h1yA in template set Warning: unaligning (T0355)S19 because first residue in template chain is (1h1yA)A5 Warning: unaligning (T0355)G277 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1h1yA)Q224 Warning: unaligning (T0355)L278 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1h1yA)Q224 T0355 20 :KALIGM 1h1yA 6 :AKIAPS T0355 37 :YRNASMD 1h1yA 12 :MLSSDFA T0355 48 :ACMRDAERLIEGGMHGLIVENHGDV 1h1yA 19 :NLAAEADRMVRLGADWLHMDIMDGH T0355 74 :FSKPDDIGP 1h1yA 44 :FVPNLTIGA T0355 103 :VGINVLANAPIPAFAIAKAGG 1h1yA 53 :PVIQSLRKHTKAYLDCHLMVT T0355 128 :RVNQWANA 1h1yA 74 :NPSDYVEP T0355 137 :VANEGFMEGRA 1h1yA 82 :LAKAGASGFTF T0355 148 :AEAM 1h1yA 94 :IEVS T0355 152 :RYRSLLRAEHIKVFADSHVKHGA 1h1yA 99 :DNWQELIQSIKAKGMRPGVSLRP T0355 177 :ITADRSIDELTRD 1h1yA 122 :GTPVEEVFPLVEA T0355 190 :L 1h1yA 138 :V T0355 196 :DGVIAT 1h1yA 139 :ELVLVM T0355 202 :GQRTGNSASLEEIEEIGAAT 1h1yA 151 :GGQKFMPEMMEKVRALRKKY T0355 222 :HLPLLVGSGVNEGNIVEILKR 1h1yA 172 :SLDIEVDGGLGPSTIDVAASA T0355 243 :TSGVIVASSLKEG 1h1yA 194 :ANCIVAGSSIFGA T0355 261 :PVELARVRSFVAAARP 1h1yA 207 :AEPGEVISALRKSVEG Number of specific fragments extracted= 16 number of extra gaps= 1 total=2054 Number of alignments=125 # 1h1yA read from 1h1yA/merged-good-all-a2m # found chain 1h1yA in template set Warning: unaligning (T0355)G277 because of BadResidue code TOO_FEW_ATOMS+NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1h1yA)Q224 T0355 21 :ALI 1h1yA 7 :KIA T0355 29 :PAFPGAPRYR 1h1yA 10 :PSMLSSDFAN T0355 49 :CMRDAERLIEGGMHGLIVENHGDVPFSKP 1h1yA 20 :LAAEADRMVRLGADWLHMDIMDGHFVPNL T0355 79 :DIGPETS 1h1yA 49 :TIGAPVI T0355 93 :DRIVRTAGVPVGINVLANAPIPAFAIAKAGGAKFIRVN 1h1yA 56 :QSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFH T0355 140 :EGFMEGRAAEAMRYRSLLR 1h1yA 94 :IEVSRDNWQELIQSIKAKG T0355 162 :IKVFADSH 1h1yA 113 :MRPGVSLR T0355 179 :ADRSIDELTRDLAF 1h1yA 121 :PGTPVEEVFPLVEA T0355 193 :FDADGVIATGQRTGNSAS 1h1yA 136 :NPVELVLVMTVEPGFGGQ T0355 211 :LEEIEEIGA 1h1yA 160 :MEKVRALRK T0355 220 :ATHLPLLVGSGVNEGNIVEILKR 1h1yA 170 :YPSLDIEVDGGLGPSTIDVAASA T0355 243 :TSGVIVASSLKEGGV 1h1yA 194 :ANCIVAGSSIFGAAE T0355 264 :LARVRSFVAAARP 1h1yA 210 :GEVISALRKSVEG Number of specific fragments extracted= 13 number of extra gaps= 1 total=2067 Number of alignments=126 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1km4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0355 read from 1km4A/merged-good-all-a2m # 1km4A read from 1km4A/merged-good-all-a2m # found chain 1km4A in training set Warning: unaligning (T0355)A274 because last residue in template chain is (1km4A)I222 T0355 30 :AFPGAPRYRNAS 1km4A 12 :MNRLILAMDLMN T0355 46 :YDACMRDAERLIEG 1km4A 24 :RDDALRVTGEVREY T0355 61 :MHGLIVE 1km4A 38 :IDTVKIG T0355 82 :PETSA 1km4A 45 :YPLVL T0355 93 :DRI 1km4A 50 :SEG T0355 102 :PVGINVLANA 1km4A 53 :MDIIAEFRKR T0355 112 :PIPAFAIAKAGG 1km4A 64 :GCRIIADFAVAD T0355 128 :RVNQWAN 1km4A 79 :TNEKICR T0355 136 :YVANEGFMEGRAAEAM 1km4A 86 :ATFKAGADAIIVHGFP T0355 152 :RYRSLLRAEHIKVFADSHV 1km4A 108 :ACLNVAEEMGREVFLLTEM T0355 172 :HGAHAIT 1km4A 127 :SHPGAEM T0355 182 :SIDELTR 1km4A 134 :FIQGAAD T0355 189 :DLAF 1km4A 150 :GVKN T0355 194 :DADGV 1km4A 154 :YVGPS T0355 202 :G 1km4A 159 :T T0355 210 :SLEEIEEIGAATH 1km4A 160 :RPERLSRLREIIG T0355 223 :LPLLVGS 1km4A 175 :SFLISPG T0355 230 :GVN 1km4A 186 :GGD T0355 236 :IVEILKRTSGVIVASSLKEGGV 1km4A 189 :PGETLRFADAIIVGRSIYLADN T0355 263 :ELARVRSFVAA 1km4A 211 :PAAAAAGIIES Number of specific fragments extracted= 20 number of extra gaps= 0 total=2087 Number of alignments=127 # 1km4A read from 1km4A/merged-good-all-a2m # found chain 1km4A in training set Warning: unaligning (T0355)R18 because first residue in template chain is (1km4A)V11 Warning: unaligning (T0355)A274 because last residue in template chain is (1km4A)I222 T0355 19 :SKALIGMIHCPA 1km4A 12 :MNRLILAMDLMN T0355 46 :YDACMRDAERLIEG 1km4A 24 :RDDALRVTGEVREY T0355 61 :MHGLIVE 1km4A 38 :IDTVKIG T0355 88 :MSVVTDRI 1km4A 45 :YPLVLSEG T0355 103 :VGINVLANAPIPAFAIAKAGGAKFIRVNQWANA 1km4A 54 :DIIAEFRKRFGCRIIADFAVADIPETNEKICRA T0355 137 :VANEGFMEGRAAEAM 1km4A 87 :TFKAGADAIIVHGFP T0355 152 :RYRSLLRAEHIKVFADSHVKHGA 1km4A 104 :DSVRACLNVAEEMGREVFLLTEM T0355 177 :ITAD 1km4A 127 :SHPG T0355 181 :RSIDELTRDLAFFDA 1km4A 137 :GAADEIARMGVDLGV T0355 197 :GVIAT 1km4A 153 :NYVGP T0355 208 :SASLEEIEEIGAAT 1km4A 158 :STRPERLSRLREII T0355 222 :HLPLLVGS 1km4A 174 :DSFLISPG T0355 230 :GVNE 1km4A 186 :GGDP T0355 237 :VEILKRTSGVIVASSLKEG 1km4A 190 :GETLRFADAIIVGRSIYLA T0355 261 :PVELARVRSFVAA 1km4A 209 :DNPAAAAAGIIES Number of specific fragments extracted= 15 number of extra gaps= 0 total=2102 Number of alignments=128 # 1km4A read from 1km4A/merged-good-all-a2m # found chain 1km4A in training set Warning: unaligning (T0355)A274 because last residue in template chain is (1km4A)I222 T0355 20 :KALIGM 1km4A 14 :RLILAM T0355 38 :RNASMDA 1km4A 20 :DLMNRDD T0355 49 :CMRDAERLIEG 1km4A 27 :ALRVTGEVREY T0355 61 :MHGLIVE 1km4A 38 :IDTVKIG T0355 83 :ETSA 1km4A 46 :PLVL T0355 91 :VTDRIVRTAGVPVGINVLANA 1km4A 55 :IIAEFRKRFGCRIIADFAVAD T0355 112 :PIPAFAIAKAGGAKFIRVNQW 1km4A 80 :NEKICRATFKAGADAIIVHGF T0355 142 :FMEGRAAEAMRYRSLLRA 1km4A 101 :PGADSVRACLNVAEEMGR T0355 161 :HIKVFADSHVKH 1km4A 119 :EVFLLTEMSHPG T0355 177 :ITADR 1km4A 131 :AEMFI T0355 182 :SIDELTRDLAFFDADGVI 1km4A 138 :AADEIARMGVDLGVKNYV T0355 206 :GNSASLEEIEEIGA 1km4A 156 :GPSTRPERLSRLRE T0355 220 :ATHLPL 1km4A 172 :GQDSFL T0355 227 :VGSGV 1km4A 178 :ISPGV T0355 232 :N 1km4A 188 :D T0355 236 :IVEILKRTSGVIVASSLKEGGV 1km4A 189 :PGETLRFADAIIVGRSIYLADN T0355 264 :LARVRSFVAA 1km4A 212 :AAAAAGIIES Number of specific fragments extracted= 17 number of extra gaps= 0 total=2119 Number of alignments=129 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2gokA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2gokA expands to /projects/compbio/data/pdb/2gok.pdb.gz 2gokA:# T0355 read from 2gokA/merged-good-all-a2m # 2gokA read from 2gokA/merged-good-all-a2m # adding 2gokA to template set # found chain 2gokA in template set T0355 39 :NASMDAIYDACMRDAERLIEGGMHGLIVENHGDV 2gokA 127 :ALSDEVLVAQALPRLDTLLSEGVSTIEIKSGYGL T0355 80 :IGPETSAFMSV 2gokA 161 :DIETELKMLRV T0355 105 :INVLANAPIPAFAIAKAGGAKF 2gokA 172 :ARRLETLRPVRIVTSYLAAHAT T0355 127 :IRVNQWANAYVANE 2gokA 195 :ADYKGRNADYITDV T0355 150 :AMRYRSLLRAEHI 2gokA 209 :VLPGLEKAHAEGL T0355 163 :KVF 2gokA 223 :DAV T0355 166 :ADSHVKHGAHAIT 2gokA 228 :FCEGIAFSVKEID T0355 182 :SIDELTR 2gokA 241 :RVFAAAQ T0355 194 :DADGVIATGQRTGNS 2gokA 250 :GLPVKLHAEQLSNLG T0355 213 :EIEEIGAA 2gokA 265 :GAELAASY T0355 222 :H 2gokA 273 :N T0355 223 :LPLLVGSGVNEGNIVEILKR 2gokA 275 :LSADHLEYLDETGAKALAKA T0355 243 :TSGVIVASSLKEGGVWW 2gokA 296 :TVAVLLPGAFYALREKQ T0355 264 :LARVRSF 2gokA 316 :VQALRDA Number of specific fragments extracted= 14 number of extra gaps= 0 total=2133 Number of alignments=130 # 2gokA read from 2gokA/merged-good-all-a2m # found chain 2gokA in template set T0355 40 :ASMDAIYDACMRDAERLIEGGMHGLIVENHGDV 2gokA 128 :LSDEVLVAQALPRLDTLLSEGVSTIEIKSGYGL T0355 80 :IGPETSAFM 2gokA 161 :DIETELKML T0355 103 :VGINVLANAPIPAFAIAKAG 2gokA 170 :RVARRLETLRPVRIVTSYLA T0355 123 :GAKF 2gokA 194 :PADY T0355 127 :IRVNQWANAYVAN 2gokA 199 :GRNADYITDVVLP T0355 157 :LRAEHIKVFA 2gokA 212 :GLEKAHAEGL T0355 167 :DSH 2gokA 223 :DAV T0355 170 :VKHGA 2gokA 228 :FCEGI T0355 177 :ITADRSIDELTRDLAFFDADGVIATGQRTGN 2gokA 233 :AFSVKEIDRVFAAAQQRGLPVKLHAEQLSNL T0355 210 :SL 2gokA 264 :GG T0355 214 :IEEIGA 2gokA 266 :AELAAS T0355 221 :THLPLLVGSGV 2gokA 272 :YNALSADHLEY T0355 232 :NEGNIVEILKR 2gokA 284 :DETGAKALAKA T0355 243 :TSGVIVASSLKEGGVWWN 2gokA 296 :TVAVLLPGAFYALREKQL T0355 264 :LARVRSF 2gokA 316 :VQALRDA Number of specific fragments extracted= 15 number of extra gaps= 0 total=2148 Number of alignments=131 # 2gokA read from 2gokA/merged-good-all-a2m # found chain 2gokA in template set T0355 40 :ASMDAIYDACMRDAERLIEGGMHGLIVENHGD 2gokA 128 :LSDEVLVAQALPRLDTLLSEGVSTIEIKSGYG T0355 80 :IGPETSAFMSVVTDRIVRTAGVPVGINVLANA 2gokA 160 :LDIETELKMLRVARRLETLRPVRIVTSYLAAH T0355 112 :PIPAFAIAKAGGA 2gokA 209 :VLPGLEKAHAEGL T0355 130 :NQWANAYVANEGFMEGRAAEAMRYRSLLRA 2gokA 222 :ADAVDGFCEGIAFSVKEIDRVFAAAQQRGL T0355 161 :HIKVFADSHVK 2gokA 252 :PVKLHAEQLSN T0355 181 :RS 2gokA 263 :LG T0355 186 :LTRDLAFFDADGVIATGQ 2gokA 265 :GAELAASYNALSADHLEY T0355 209 :ASLEEIEEIGAATH 2gokA 283 :LDETGAKALAKAGT T0355 225 :LLVGS 2gokA 297 :VAVLL T0355 231 :VNEGNIVEI 2gokA 314 :PPVQALRDA T0355 242 :RTSGVIVASSLKEGGVWWN 2gokA 323 :GAEIALATDCNPGTSPLTS Number of specific fragments extracted= 11 number of extra gaps= 0 total=2159 Number of alignments=132 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yadA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1yadA expands to /projects/compbio/data/pdb/1yad.pdb.gz 1yadA:# T0355 read from 1yadA/merged-good-all-a2m # 1yadA read from 1yadA/merged-good-all-a2m # adding 1yadA to template set # found chain 1yadA in template set Warning: unaligning (T0355)P32 because first residue in template chain is (1yadA)M1 Warning: unaligning (T0355)I199 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yadA)R135 T0355 33 :GAPRYRNASMD 1yadA 2 :ELHAITDDSKP T0355 46 :YDACMRDAERLI 1yadA 13 :VEELARIIITIQ T0355 61 :MHGLIV 1yadA 27 :VDFIHI T0355 75 :SKPDDIGPETSAFMSVVTDRIVRTAGV 1yadA 33 :RERSKSAADILKLLDLIFEGGIDKRKL T0355 118 :IAKA 1yadA 60 :VMNG T0355 128 :RVN 1yadA 64 :RVD T0355 136 :YVANEGFMEGRAAEAMRYRSLLRA 1yadA 67 :IALFSTIHRVQLPSGSFSPKQIRA T0355 160 :EHIKVFADSH 1yadA 93 :PHLHIGRSVH T0355 173 :GAHAIT 1yadA 103 :SLEEAV T0355 182 :SIDE 1yadA 109 :QAEK T0355 188 :RDLAFFDADGV 1yadA 113 :EDADYVLFGHV T0355 210 :SLEEIEEIGAATHLPLLVGSGVNEGNIVEILKR 1yadA 136 :GVSLLSDIKQRISIPVIAIGGMTPDRLRDVKQA T0355 243 :TSGVIVASSLKEGGV 1yadA 170 :ADGIAVMSGIFSSAE T0355 263 :ELARVRSFVAAARPG 1yadA 185 :PLEAARRYSRKLKEM Number of specific fragments extracted= 14 number of extra gaps= 0 total=2173 Number of alignments=133 # 1yadA read from 1yadA/merged-good-all-a2m # found chain 1yadA in template set Warning: unaligning (T0355)K20 because first residue in template chain is (1yadA)M1 Warning: unaligning (T0355)I199 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1yadA)R135 T0355 21 :ALIGMIHCPAF 1yadA 2 :ELHAITDDSKP T0355 46 :YDACMRDAERLIEG 1yadA 13 :VEELARIIITIQNE T0355 61 :MHGLIVE 1yadA 27 :VDFIHIR T0355 76 :KPDDIGPETSAFMSVVTDRIVRTAGV 1yadA 34 :ERSKSAADILKLLDLIFEGGIDKRKL T0355 117 :AIAK 1yadA 60 :VMNG T0355 128 :RVNQ 1yadA 64 :RVDI T0355 137 :VANEGFMEGRAAEAM 1yadA 68 :ALFSTIHRVQLPSGS T0355 152 :R 1yadA 84 :S T0355 158 :RAEHIKVFADSHVKHGA 1yadA 85 :PKQIRARFPHLHIGRSV T0355 178 :TADRSIDELTRD 1yadA 102 :HSLEEAVQAEKE T0355 190 :LAFFDADGV 1yadA 115 :ADYVLFGHV T0355 210 :SLEEIEEIGAATHLPLLVGSGVNEGNIVEILKR 1yadA 136 :GVSLLSDIKQRISIPVIAIGGMTPDRLRDVKQA T0355 243 :TSGVIVASSLKEG 1yadA 170 :ADGIAVMSGIFSS T0355 261 :PVELARVRSFVAAARPG 1yadA 183 :AEPLEAARRYSRKLKEM Number of specific fragments extracted= 14 number of extra gaps= 0 total=2187 Number of alignments=134 # 1yadA read from 1yadA/merged-good-all-a2m # found chain 1yadA in template set Warning: unaligning (T0355)K20 because first residue in template chain is (1yadA)M1 Warning: unaligning (T0355)S210 because of BadResidue code TOO_FEW_ATOMS+CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1yadA)R135 T0355 21 :ALIGMI 1yadA 2 :ELHAIT T0355 37 :YRNASMDAIYDACMR 1yadA 8 :DDSKPVEELARIIIT T0355 56 :LIE 1yadA 23 :IQN T0355 61 :MHGLIVENH 1yadA 27 :VDFIHIRER T0355 79 :DIGPETSA 1yadA 36 :SKSAADIL T0355 90 :VVTDRIVRTA 1yadA 44 :KLLDLIFEGG T0355 106 :NVLANAPI 1yadA 59 :LVMNGRVD T0355 118 :IAKAGGAKFIRV 1yadA 67 :IALFSTIHRVQL T0355 139 :NEGFMEGR 1yadA 79 :PSGSFSPK T0355 152 :RYRSL 1yadA 87 :QIRAR T0355 159 :AEHIKVFADSH 1yadA 92 :FPHLHIGRSVH T0355 182 :SIDELTR 1yadA 103 :SLEEAVQ T0355 190 :LAFFDADGVIAT 1yadA 110 :AEKEDADYVLFG T0355 211 :LEEIEEIGAATHLPLLVGSGVNEGNIVEILKR 1yadA 137 :VSLLSDIKQRISIPVIAIGGMTPDRLRDVKQA T0355 243 :TSGVIVASSLKEGGV 1yadA 170 :ADGIAVMSGIFSSAE T0355 264 :LARVRSFVAAARPG 1yadA 186 :LEAARRYSRKLKEM Number of specific fragments extracted= 16 number of extra gaps= 0 total=2203 Number of alignments=135 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1tqxA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1tqxA expands to /projects/compbio/data/pdb/1tqx.pdb.gz 1tqxA:# T0355 read from 1tqxA/merged-good-all-a2m # 1tqxA read from 1tqxA/merged-good-all-a2m # adding 1tqxA to template set # found chain 1tqxA in template set Warning: unaligning (T0355)L281 because last residue in template chain is (1tqxA)Y224 T0355 32 :PGAPRYRNASMD 1tqxA 7 :IIAPSVLASNIS T0355 48 :ACMRDAERLIEGGMHGLIVENHGDV 1tqxA 19 :KLAEETQRMESLGAEWIHLDVMDMH T0355 74 :FSKPDDIGPE 1tqxA 44 :FVPNLSFGPP T0355 104 :GINVLAN 1tqxA 54 :VINNLKK T0355 111 :APIPAFAIAKAGG 1tqxA 62 :TKSIFFDVHLMVE T0355 128 :RVNQWAN 1tqxA 75 :YPEKYVP T0355 136 :YVA 1tqxA 82 :LLK T0355 141 :GFMEGRAAEAMRYR 1tqxA 85 :TSNQLTFHFEALNE T0355 155 :SLLRAEHIKVFADSHVKHGAHAIT 1tqxA 108 :KEIRDNNLWCGISIKPKTDVQKLV T0355 182 :SIDEL 1tqxA 132 :PILDT T0355 188 :RDLAFFDA 1tqxA 137 :NLINTVLV T0355 200 :AT 1tqxA 145 :MT T0355 202 :GQRTGNSASLEEIEEIGAATH 1tqxA 152 :GGQSFMHDMMGKVSFLRKKYK T0355 223 :LPLLVGSGVNEGNIVEILKR 1tqxA 174 :LNIQVDGGLNIETTEISASH T0355 243 :TSGVIVASSLKEGGV 1tqxA 195 :ANIIVAGTSIFNAED T0355 267 :VRSFVAAARPGLEA 1tqxA 210 :PKYVIDTMRVSVQK Number of specific fragments extracted= 16 number of extra gaps= 0 total=2219 Number of alignments=136 # 1tqxA read from 1tqxA/merged-good-all-a2m # found chain 1tqxA in template set Warning: unaligning (T0355)S19 because first residue in template chain is (1tqxA)L4 Warning: unaligning (T0355)G277 because last residue in template chain is (1tqxA)Y224 T0355 20 :KALIGM 1tqxA 5 :KAIIAP T0355 36 :RYRNASMDA 1tqxA 11 :SVLASNISK T0355 49 :CMRDAERLIEGGMHGLIVENHGDV 1tqxA 20 :LAEETQRMESLGAEWIHLDVMDMH T0355 74 :FSKPDDIGP 1tqxA 44 :FVPNLSFGP T0355 103 :VGINVLANAP 1tqxA 53 :PVINNLKKYT T0355 113 :IPAFAIAKAGG 1tqxA 64 :SIFFDVHLMVE T0355 128 :RVNQWANA 1tqxA 75 :YPEKYVPL T0355 137 :VANE 1tqxA 83 :LKTS T0355 143 :MEGRAAEAM 1tqxA 87 :NQLTFHFEA T0355 152 :RYRS 1tqxA 98 :EDTE T0355 156 :LLRAEHIKVFADSHVKHGA 1tqxA 105 :QLAKEIRDNNLWCGISIKP T0355 177 :ITADRSIDELTRD 1tqxA 124 :KTDVQKLVPILDT T0355 193 :FDADGVIAT 1tqxA 137 :NLINTVLVM T0355 202 :GQRTGNSASLEEIEEIGAAT 1tqxA 152 :GGQSFMHDMMGKVSFLRKKY T0355 222 :HLPLLVGSGVNEGNIVEILKR 1tqxA 173 :NLNIQVDGGLNIETTEISASH T0355 243 :TSGVIVASSLKEG 1tqxA 195 :ANIIVAGTSIFNA T0355 261 :PVELARVRSFVAAARP 1tqxA 208 :EDPKYVIDTMRVSVQK Number of specific fragments extracted= 17 number of extra gaps= 0 total=2236 Number of alignments=137 # 1tqxA read from 1tqxA/merged-good-all-a2m # found chain 1tqxA in template set Warning: unaligning (T0355)S19 because first residue in template chain is (1tqxA)L4 T0355 20 :KALIGMIHCP 1tqxA 5 :KAIIAPSVLA T0355 34 :APRYR 1tqxA 15 :SNISK T0355 49 :CMRDAERLIEGGMHGLIVENH 1tqxA 20 :LAEETQRMESLGAEWIHLDVM T0355 71 :DVPFSKPDDIGPETSA 1tqxA 41 :DMHFVPNLSFGPPVIN T0355 94 :RIVRTA 1tqxA 57 :NLKKYT T0355 100 :GVPVGINVLANAPI 1tqxA 64 :SIFFDVHLMVEYPE T0355 125 :KFI 1tqxA 78 :KYV T0355 130 :NQWANAY 1tqxA 87 :NQLTFHF T0355 141 :GFMEGRAAEAMRYRSLLRAEHIKVFADSHV 1tqxA 94 :EALNEDTERCIQLAKEIRDNNLWCGISIKP T0355 180 :DRSIDELTRDLAFFDADGVIATG 1tqxA 124 :KTDVQKLVPILDTNLINTVLVMT T0355 203 :QRTGNSAS 1tqxA 150 :GFGGQSFM T0355 211 :LEEIEEIGA 1tqxA 161 :MGKVSFLRK T0355 220 :ATHLPLLVGSGVNEGNIVEILKR 1tqxA 171 :YKNLNIQVDGGLNIETTEISASH T0355 243 :TSGVIVASSLKEGGV 1tqxA 195 :ANIIVAGTSIFNAED T0355 264 :LARVRSFVAAARP 1tqxA 211 :KYVIDTMRVSVQK Number of specific fragments extracted= 15 number of extra gaps= 0 total=2251 Number of alignments=138 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yxyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1yxyA expands to /projects/compbio/data/pdb/1yxy.pdb.gz 1yxyA:# T0355 read from 1yxyA/merged-good-all-a2m # 1yxyA read from 1yxyA/merged-good-all-a2m # adding 1yxyA to template set # found chain 1yxyA in template set Warning: unaligning (T0355)D6 because first residue in template chain is (1yxyA)K4 T0355 7 :NAANAIQEIFG 1yxyA 5 :PTKEKLMEQLK T0355 19 :SKALIGMIHCPAFPGAP 1yxyA 16 :GGIIVSCQALPGEPLYS T0355 40 :AS 1yxyA 35 :GG T0355 48 :ACMRDAERLIEGGMHGLIVE 1yxyA 37 :IMPLMAKAAQEAGAVGIRAN T0355 101 :VPVGINVLANAPIPAFAIAKA 1yxyA 57 :SVRDIKEIQAITDLPIIGIIK T0355 122 :GGAKFIRVNQWAN 1yxyA 83 :QEPFITATMTEVD T0355 136 :YVANEGFM 1yxyA 96 :QLAALNIA T0355 145 :GRAAEAM 1yxyA 104 :VIAMDCT T0355 155 :SLLRA 1yxyA 125 :RQVKE T0355 160 :EHIKVFADSHV 1yxyA 132 :PNQLLMADIST T0355 174 :AHAIT 1yxyA 143 :FDEGL T0355 182 :SIDEL 1yxyA 148 :VAHQA T0355 189 :DLAFFDADGV 1yxyA 153 :GIDFVGTTLS T0355 202 :G 1yxyA 163 :G T0355 203 :QRTGNSASLEEIEEIGAA 1yxyA 168 :SRQEAGPDVALIEALCKA T0355 222 :HLPLLVGSGV 1yxyA 186 :GIAVIAEGKI T0355 232 :NEGNIVEILKR 1yxyA 197 :SPEEAKKINDL T0355 243 :TSGVIVASSLK 1yxyA 209 :VAGIVVGGAIT T0355 260 :NPVELA 1yxyA 220 :RPKEIA T0355 276 :PG 1yxyA 226 :ER Number of specific fragments extracted= 20 number of extra gaps= 0 total=2271 Number of alignments=139 # 1yxyA read from 1yxyA/merged-good-all-a2m # found chain 1yxyA in template set Warning: unaligning (T0355)D6 because first residue in template chain is (1yxyA)K4 T0355 7 :NAANAIQEIFGRSK 1yxyA 5 :PTKEKLMEQLKGGI T0355 25 :MIHCPAFPGAPRY 1yxyA 19 :IVSCQALPGEPLY T0355 41 :SMD 1yxyA 32 :SET T0355 46 :YDACMRDAERLIEGGMHGLIVE 1yxyA 35 :GGIMPLMAKAAQEAGAVGIRAN T0355 101 :VPVGINVLANAPIPAFAIAKA 1yxyA 57 :SVRDIKEIQAITDLPIIGIIK T0355 122 :GGAKFIRVNQWANA 1yxyA 83 :QEPFITATMTEVDQ T0355 137 :VANEGFMEGRA 1yxyA 97 :LAALNIAVIAM T0355 148 :AEAMRY 1yxyA 115 :HDGLDI T0355 155 :SLLRAEHIKVFADSHVKHG 1yxyA 121 :ASFIRQVKEKYPNQLLMAD T0355 177 :ITADRSIDELTR 1yxyA 140 :ISTFDEGLVAHQ T0355 193 :FDADGVIAT 1yxyA 152 :AGIDFVGTT T0355 202 :G 1yxyA 163 :G T0355 203 :QRTGNSASLEEIEEIGAA 1yxyA 168 :SRQEAGPDVALIEALCKA T0355 222 :HLPLLVGSGV 1yxyA 186 :GIAVIAEGKI T0355 232 :NEGNIVEILKR 1yxyA 197 :SPEEAKKINDL T0355 243 :TSGVIVASSLKE 1yxyA 209 :VAGIVVGGAITR T0355 261 :PVELAR 1yxyA 221 :PKEIAE Number of specific fragments extracted= 17 number of extra gaps= 0 total=2288 Number of alignments=140 # 1yxyA read from 1yxyA/merged-good-all-a2m # found chain 1yxyA in template set T0355 7 :NAANAIQEIFGRSK 1yxyA 5 :PTKEKLMEQLKGGI T0355 25 :MIHCPAFPGAPRYRNAS 1yxyA 19 :IVSCQALPGEPLYSETG T0355 49 :CMRDAERLIEGGMHGLIVEN 1yxyA 38 :MPLMAKAAQEAGAVGIRANS T0355 89 :SVVTDRIVRTAGVPV 1yxyA 58 :VRDIKEIQAITDLPI T0355 105 :INVL 1yxyA 73 :IGII T0355 109 :ANAPIPAFAIAKAGGAKFIRVNQ 1yxyA 87 :ITATMTEVDQLAALNIAVIAMDC T0355 134 :NAYVANEGFM 1yxyA 110 :TKRDRHDGLD T0355 147 :AAEAMRYRSL 1yxyA 120 :IASFIRQVKE T0355 158 :RAEHIKVFADSHV 1yxyA 130 :KYPNQLLMADIST T0355 184 :DELTRDLAFFDADGVIAT 1yxyA 143 :FDEGLVAHQAGIDFVGTT T0355 202 :GQ 1yxyA 163 :GY T0355 204 :RTGNSASLEEIEEIGAA 1yxyA 169 :RQEAGPDVALIEALCKA T0355 222 :HLPLLVGSGV 1yxyA 186 :GIAVIAEGKI T0355 232 :NEGNIVEILKR 1yxyA 197 :SPEEAKKINDL T0355 243 :TSGVIVASSL 1yxyA 209 :VAGIVVGGAI T0355 272 :AAARPGLEALE 1yxyA 222 :KEIAERFIEAL Number of specific fragments extracted= 16 number of extra gaps= 0 total=2304 Number of alignments=141 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vzwA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vzwA expands to /projects/compbio/data/pdb/1vzw.pdb.gz 1vzwA:Skipped atom 737, because occupancy 0.500 <= existing 0.500 in 1vzwA Skipped atom 741, because occupancy 0.500 <= existing 0.500 in 1vzwA Skipped atom 743, because occupancy 0.500 <= existing 0.500 in 1vzwA Skipped atom 745, because occupancy 0.500 <= existing 0.500 in 1vzwA Skipped atom 1357, because occupancy 0.500 <= existing 0.500 in 1vzwA Skipped atom 1361, because occupancy 0.500 <= existing 0.500 in 1vzwA Skipped atom 1363, because occupancy 0.500 <= existing 0.500 in 1vzwA Skipped atom 1374, because occupancy 0.500 <= existing 0.500 in 1vzwA Skipped atom 1378, because occupancy 0.500 <= existing 0.500 in 1vzwA Skipped atom 1380, because occupancy 0.500 <= existing 0.500 in 1vzwA Skipped atom 1382, because occupancy 0.500 <= existing 0.500 in 1vzwA Skipped atom 1384, because occupancy 0.500 <= existing 0.500 in 1vzwA # T0355 read from 1vzwA/merged-good-all-a2m # 1vzwA read from 1vzwA/merged-good-all-a2m # adding 1vzwA to template set # found chain 1vzwA in template set Warning: unaligning (T0355)I162 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vzwA)K124 Warning: unaligning (T0355)K163 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vzwA)K124 Warning: unaligning (T0355)G202 because of BadResidue code BAD_PEPTIDE in next template residue (1vzwA)I168 Warning: unaligning (T0355)Q203 because of BadResidue code BAD_PEPTIDE at template residue (1vzwA)I168 Warning: unaligning (T0355)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vzwA)G176 T0355 49 :CMRDAERLIEGGMHGLIVE 1vzwA 34 :PLEAALAWQRSGAEWLHLV T0355 88 :MSVVTDR 1vzwA 53 :DLDAAFG T0355 96 :VR 1vzwA 60 :TG T0355 100 :GVPVGINVLANAPIPAFAIAKAG 1vzwA 62 :DNRALIAEVAQAMDIKVELSGGI T0355 128 :RVNQWAN 1vzwA 85 :RDDDTLA T0355 136 :YVANEGFMEGRAAEAMRYR 1vzwA 92 :AALATGCTRVNLGTAALET T0355 155 :SLLRAEH 1vzwA 116 :KVIAEHG T0355 164 :VFADSH 1vzwA 125 :IAVGLD T0355 177 :ITADRSIDELTRDLAFFDADGVIAT 1vzwA 142 :TRDGGDLYETLDRLNKEGCARYVVT T0355 209 :ASLEEIEEIGAATHLPLLVGSGV 1vzwA 177 :PNLELLKNVCAATDRPVVASGGV T0355 232 :NEGNIVEILKR 1vzwA 201 :SLDDLRAIAGL T0355 243 :TSGVIVASSLKE 1vzwA 216 :VEGAIVGKALYA T0355 257 :VWWN 1vzwA 228 :KAFT T0355 267 :VRSFVAAA 1vzwA 232 :LEEALEAT Number of specific fragments extracted= 14 number of extra gaps= 2 total=2318 Number of alignments=142 # 1vzwA read from 1vzwA/merged-good-all-a2m # found chain 1vzwA in template set Warning: unaligning (T0355)R18 because first residue in template chain is (1vzwA)S2 Warning: unaligning (T0355)P35 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1vzwA)E28 Warning: unaligning (T0355)A166 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vzwA)K124 Warning: unaligning (T0355)D167 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vzwA)K124 Warning: unaligning (T0355)G206 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vzwA)G176 T0355 19 :SKALIGMIHCPAFPGA 1vzwA 3 :KLELLPAVDVRDGQAV T0355 46 :YDACMRDAERLIEGGMHGLI 1vzwA 31 :YGSPLEAALAWQRSGAEWLH T0355 66 :VE 1vzwA 52 :VD T0355 92 :TDRIVRTAGVPVGINVLANAPIPAFAIAKAGGA 1vzwA 54 :LDAAFGTGDNRALIAEVAQAMDIKVELSGGIRD T0355 130 :NQWANA 1vzwA 87 :DDTLAA T0355 137 :VANEGFMEGRAAEAM 1vzwA 93 :ALATGCTRVNLGTAA T0355 152 :RYRSLLRAEHIKVF 1vzwA 109 :ETPEWVAKVIAEHG T0355 168 :SHVKH 1vzwA 125 :IAVGL T0355 173 :GAHAITADRSIDELTRDLAFFDADGVIAT 1vzwA 138 :GRGWTRDGGDLYETLDRLNKEGCARYVVT T0355 209 :ASLEEIEEIGAATHLPLLVGSGV 1vzwA 177 :PNLELLKNVCAATDRPVVASGGV T0355 232 :NEGNIVEILKR 1vzwA 201 :SLDDLRAIAGL T0355 243 :TSGVIVASSLKEGGV 1vzwA 216 :VEGAIVGKALYAKAF T0355 259 :W 1vzwA 231 :T T0355 267 :VRSFVAAA 1vzwA 232 :LEEALEAT Number of specific fragments extracted= 14 number of extra gaps= 1 total=2332 Number of alignments=143 # 1vzwA read from 1vzwA/merged-good-all-a2m # found chain 1vzwA in template set Warning: unaligning (T0355)R18 because first residue in template chain is (1vzwA)S2 Warning: unaligning (T0355)A34 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vzwA)E28 Warning: unaligning (T0355)E160 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vzwA)K124 Warning: unaligning (T0355)H161 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vzwA)K124 Warning: unaligning (T0355)G202 because of BadResidue code BAD_PEPTIDE in next template residue (1vzwA)I168 Warning: unaligning (T0355)Q203 because of BadResidue code BAD_PEPTIDE at template residue (1vzwA)I168 Warning: unaligning (T0355)S208 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (1vzwA)G176 T0355 19 :SKALIGMIHC 1vzwA 3 :KLELLPAVDV T0355 35 :PRYRN 1vzwA 29 :TSYGS T0355 49 :CMRDAERLIEGGMHGLIVEN 1vzwA 34 :PLEAALAWQRSGAEWLHLVD T0355 76 :KPDDIGPETSA 1vzwA 58 :FGTGDNRALIA T0355 94 :RIVRTAGVPVGINVLANA 1vzwA 69 :EVAQAMDIKVELSGGIRD T0355 113 :IPAFAIAKAGGAKF 1vzwA 87 :DDTLAAALATGCTR T0355 129 :VNQWANAYV 1vzwA 101 :VNLGTAALE T0355 146 :RAAEAMRYRSLLR 1vzwA 110 :TPEWVAKVIAEHG T0355 162 :IKVFADSHVK 1vzwA 125 :IAVGLDVRGT T0355 172 :HGAHAITADRSIDELTRDLAFFDADGVIAT 1vzwA 137 :RGRGWTRDGGDLYETLDRLNKEGCARYVVT T0355 209 :ASLEEIEEIGAATHLPLLVGSGV 1vzwA 177 :PNLELLKNVCAATDRPVVASGGV T0355 232 :NEGNIVEILKR 1vzwA 201 :SLDDLRAIAGL T0355 243 :TSGVIVASSLKEGGVW 1vzwA 216 :VEGAIVGKALYAKAFT T0355 267 :VRSFVAAA 1vzwA 232 :LEEALEAT Number of specific fragments extracted= 14 number of extra gaps= 2 total=2346 Number of alignments=144 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vh7A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vh7A expands to /projects/compbio/data/pdb/1vh7.pdb.gz 1vh7A:Skipped atom 193, because occupancy 0.500 <= existing 0.500 in 1vh7A Skipped atom 195, because occupancy 0.500 <= existing 0.500 in 1vh7A Skipped atom 197, because occupancy 0.500 <= existing 0.500 in 1vh7A Skipped atom 199, because occupancy 0.500 <= existing 0.500 in 1vh7A Skipped atom 201, because occupancy 0.500 <= existing 0.500 in 1vh7A Skipped atom 203, because occupancy 0.500 <= existing 0.500 in 1vh7A Skipped atom 688, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 690, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 692, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 694, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 890, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 892, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 894, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 896, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 925, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1031, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1033, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1035, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1037, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1039, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1370, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1372, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1374, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1376, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1835, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1837, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1839, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1841, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1843, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1923, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1925, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1927, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1929, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1931, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1933, because occupancy 0.350 <= existing 0.650 in 1vh7A Skipped atom 1935, because occupancy 0.350 <= existing 0.650 in 1vh7A # T0355 read from 1vh7A/merged-good-all-a2m # 1vh7A read from 1vh7A/merged-good-all-a2m # adding 1vh7A to template set # found chain 1vh7A in template set T0355 41 :S 1vh7A 31 :D T0355 49 :CMRDAERLIEGGMH 1vh7A 32 :PVELGKFYSEIGID T0355 63 :GLIVE 1vh7A 47 :LVFLD T0355 74 :FSKPDDIGPETSAF 1vh7A 52 :ITASVEKRKTMLEL T0355 105 :INVLANAPIPAFAIAKAGG 1vh7A 66 :VEKVAEQIDIPFTVGGGIH T0355 128 :RVNQWA 1vh7A 85 :DFETAS T0355 136 :YVANEGFMEGRAAEAM 1vh7A 91 :ELILRGADKVSINTAA T0355 153 :YR 1vh7A 107 :VE T0355 155 :SLLRAEHIK 1vh7A 115 :QIAQTFGSQ T0355 164 :VFADS 1vh7A 125 :VVVAI T0355 174 :AHAIT 1vh7A 154 :RDWVV T0355 182 :SIDEL 1vh7A 159 :EVEKR T0355 189 :DLAFFDADGVI 1vh7A 164 :GAGEILLTSID T0355 202 :GQRTGNSASLEEIEEIGAATHLPLLVGSGV 1vh7A 175 :RDGTKSGYDTEMIRFVRPLTTLPIIASGGA T0355 232 :NEGNIVEILKR 1vh7A 206 :KMEHFLEAFLA T0355 243 :TSGVIVASSLK 1vh7A 218 :ADAALAASVFH T0355 254 :EGGV 1vh7A 230 :REID T0355 267 :VRSFVAAARP 1vh7A 234 :VRELKEYLKK Number of specific fragments extracted= 18 number of extra gaps= 0 total=2364 Number of alignments=145 # 1vh7A read from 1vh7A/merged-good-all-a2m # found chain 1vh7A in template set Warning: unaligning (T0355)R18 because first residue in template chain is (1vh7A)L2 T0355 19 :SKALIGMIHCPAFPGAPRYRNASMDA 1vh7A 3 :AKRIIACLDVKDGRVVKGTNFENLRD T0355 46 :YDACMRDAERLIEGGMHGLIV 1vh7A 29 :SGDPVELGKFYSEIGIDELVF T0355 70 :GDVP 1vh7A 50 :LDIT T0355 80 :IGPETSAFM 1vh7A 54 :ASVEKRKTM T0355 102 :PVGINVLANAPIPAFAIAKAGGAKF 1vh7A 63 :LELVEKVAEQIDIPFTVGGGIHDFE T0355 128 :RVNQWANA 1vh7A 88 :TASELILR T0355 141 :GFMEGRAAEAM 1vh7A 96 :GADKVSINTAA T0355 152 :RYRSLLRAEHIKVFADS 1vh7A 108 :ENPSLITQIAQTFGSQA T0355 183 :IDELTRDLAFFDADGVIAT 1vh7A 153 :LRDWVVEVEKRGAGEILLT T0355 202 :GQRTGN 1vh7A 177 :GTKSGY T0355 210 :SLEEIEEIGAATHLPLLVGSGV 1vh7A 183 :DTEMIRFVRPLTTLPIIASGGA T0355 232 :NEGNIVEILKR 1vh7A 206 :KMEHFLEAFLA T0355 243 :TSGVIVASSLKEGGVW 1vh7A 218 :ADAALAASVFHFREID T0355 267 :VRSFVAAARP 1vh7A 234 :VRELKEYLKK Number of specific fragments extracted= 14 number of extra gaps= 0 total=2378 Number of alignments=146 # 1vh7A read from 1vh7A/merged-good-all-a2m # found chain 1vh7A in template set T0355 19 :SKALIGMIHCP 1vh7A 3 :AKRIIACLDVK T0355 31 :FPGAPRYRN 1vh7A 23 :FENLRDSGD T0355 49 :CMRDAERLIEGGMHGLIVENHG 1vh7A 32 :PVELGKFYSEIGIDELVFLDIT T0355 80 :IGPETSAFMSVVTDRIVRTAGVPVGINVLANAPIPAFAIAKA 1vh7A 54 :ASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILR T0355 123 :GAKFIRVNQWAN 1vh7A 96 :GADKVSINTAAV T0355 145 :GRAAEAMRYRSLLRAEHIKVFADSHVKHGAHAI 1vh7A 108 :ENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMV T0355 178 :TADRSIDELTRDLAFFDADGVIATGQRT 1vh7A 148 :NTGILLRDWVVEVEKRGAGEILLTSIDR T0355 206 :G 1vh7A 177 :G T0355 207 :NSASLEEIEEIGAATHLPLLVGSGV 1vh7A 180 :SGYDTEMIRFVRPLTTLPIIASGGA T0355 232 :NEGNIVEILKR 1vh7A 206 :KMEHFLEAFLA T0355 243 :TSGVIVASSLKEGG 1vh7A 218 :ADAALAASVFHFRE T0355 262 :VE 1vh7A 232 :ID T0355 267 :VRSFVAAARP 1vh7A 234 :VRELKEYLKK Number of specific fragments extracted= 13 number of extra gaps= 0 total=2391 Number of alignments=147 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vhnA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0355 read from 1vhnA/merged-good-all-a2m # 1vhnA read from 1vhnA/merged-good-all-a2m # found chain 1vhnA in training set T0355 16 :FGRSKALIGMIHCPAFPGAPRYRNAS 1vhnA 43 :LMNSQKTEELLPQPHERNVAVQIFGS T0355 43 :D 1vhnA 69 :E T0355 46 :YDACMRDAERLIEG 1vhnA 70 :PNELSEAARILSEK T0355 61 :MHGLIVE 1vhnA 84 :YKWIDLN T0355 70 :GDVPF 1vhnA 91 :AGCPV T0355 82 :PET 1vhnA 96 :RKV T0355 92 :TDRI 1vhnA 99 :VKEG T0355 96 :VRTAGVPVGINVLANAPIPAFAIAKAGGAKFIRVNQWAN 1vhnA 109 :KDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYR T0355 136 :YVANEGFMEGRAAEAMRYR 1vhnA 148 :ILVEEGVDEVFIHTRTVVQ T0355 159 :AE 1vhnA 167 :SF T0355 174 :AHAIT 1vhnA 169 :TGRAE T0355 184 :DELTRDLAF 1vhnA 174 :WKALSVLEK T0355 222 :HLPLLVGSGV 1vhnA 183 :RIPTFVSGDI T0355 232 :NEGNIVEILKR 1vhnA 194 :TPEDAKRALEE T0355 243 :TSGVIVA 1vhnA 207 :CDGLLVA T0355 250 :SSLKEGGVWW 1vhnA 224 :KQIKDFLRSG T0355 261 :PVELARVRSFVAAARPGLEAL 1vhnA 241 :EEILRTFERHLELLIKTKGER Number of specific fragments extracted= 17 number of extra gaps= 0 total=2408 Number of alignments=148 # 1vhnA read from 1vhnA/merged-good-all-a2m # found chain 1vhnA in training set T0355 9 :ANAIQEIF 1vhnA 46 :SQKTEELL T0355 17 :GRSKALIGMIHCPA 1vhnA 56 :PHERNVAVQIFGSE T0355 46 :YDACMRDAERLIEG 1vhnA 70 :PNELSEAARILSEK T0355 61 :MHGLIVE 1vhnA 84 :YKWIDLN T0355 70 :GDVPF 1vhnA 91 :AGCPV T0355 81 :GP 1vhnA 96 :RK T0355 91 :VTDRI 1vhnA 98 :VVKEG T0355 96 :VRTAGVPVGINVLANAPIPAFAIAKAGGAKFIRVNQWANA 1vhnA 109 :KDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRI T0355 137 :VANEGFMEGRAAE 1vhnA 149 :LVEEGVDEVFIHT T0355 202 :GQRTG 1vhnA 166 :QSFTG T0355 208 :SASLEEI 1vhnA 171 :RAEWKAL T0355 219 :AAT 1vhnA 178 :SVL T0355 222 :HLPLLVGSGV 1vhnA 183 :RIPTFVSGDI T0355 232 :NEGNIVEILKR 1vhnA 194 :TPEDAKRALEE T0355 243 :TSGVIVASSLKEGG 1vhnA 207 :CDGLLVARGAIGRP T0355 257 :VWW 1vhnA 236 :SEP T0355 261 :PVELARVRSFVAAARPGLEA 1vhnA 241 :EEILRTFERHLELLIKTKGE Number of specific fragments extracted= 17 number of extra gaps= 0 total=2425 Number of alignments=149 # 1vhnA read from 1vhnA/merged-good-all-a2m # found chain 1vhnA in training set T0355 17 :GRSKALIGMI 1vhnA 57 :HERNVAVQIF T0355 39 :NASMDAIYD 1vhnA 67 :GSEPNELSE T0355 52 :DAERLIE 1vhnA 76 :AARILSE T0355 60 :GMHGLIVENHGDV 1vhnA 83 :KYKWIDLNAGCPV T0355 73 :PFSKP 1vhnA 106 :ALLKD T0355 85 :SAFMSVVTDRIVRTAGVPVGINVLA 1vhnA 111 :LRHFRYIVRELRKSVSGKFSVKTRL T0355 141 :GFMEGRAAEAMRYRSLLRAEH 1vhnA 136 :GWEKNEVEEIYRILVEEGVDE T0355 164 :VFADSHVK 1vhnA 157 :VFIHTRTV T0355 174 :AHAITADRSID 1vhnA 165 :VQSFTGRAEWK T0355 214 :IE 1vhnA 177 :LS T0355 219 :A 1vhnA 179 :V T0355 220 :ATHLPLLVGSGV 1vhnA 181 :EKRIPTFVSGDI T0355 232 :NEGNIVEILKR 1vhnA 194 :TPEDAKRALEE T0355 243 :TSGVIVASSLKEGG 1vhnA 207 :CDGLLVARGAIGRP T0355 257 :VWWNPVELARVRSFVAAARPGLEALEH 1vhnA 233 :GKYSEPSREEILRTFERHLELLIKTKG Number of specific fragments extracted= 15 number of extra gaps= 0 total=2440 Number of alignments=150 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xm3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0355 read from 1xm3A/merged-good-all-a2m # 1xm3A read from 1xm3A/merged-good-all-a2m # found chain 1xm3A in training set T0355 30 :AFPGAPRYRNASMD 1xm3A 64 :SKYTLLPNTAGAST T0355 46 :YDACMRDAERLIEGG 1xm3A 78 :AEEAVRIARLAKASG T0355 61 :MHGLIVENHGD 1xm3A 94 :CDMIKVEVIGC T0355 75 :SKPDDIGP 1xm3A 105 :SRSLLPDP T0355 83 :ETSAFMS 1xm3A 114 :ETLKASE T0355 136 :YVANEGFMEGRAAEAMRYR 1xm3A 121 :QLLEEGFIVLPYTSDDVVL T0355 155 :SLLRAEHI 1xm3A 141 :RKLEELGV T0355 189 :DLAFFDADGV 1xm3A 149 :HAIMPGASPI T0355 202 :GQRTGN 1xm3A 159 :GSGQGI T0355 209 :ASLEEIEEIGAATHLPLLVGSGV 1xm3A 165 :LNPLNLSFIIEQAKVPVIVDAGI T0355 232 :NEGNIVEILKR 1xm3A 189 :SPKDAAYAMEL T0355 243 :TSGVIVASSLKEGGV 1xm3A 201 :ADGVLLNTAVSGADD T0355 263 :ELARVRSFVAAARPGLEALEHHHHHH 1xm3A 216 :PVKMARAMKLAVEAGRLSYEAGRIPL Number of specific fragments extracted= 13 number of extra gaps= 0 total=2453 Number of alignments=151 # 1xm3A read from 1xm3A/merged-good-all-a2m # found chain 1xm3A in training set T0355 19 :SKALIGM 1xm3A 65 :KYTLLPN T0355 28 :CPAFPG 1xm3A 72 :TAGAST T0355 46 :YDACMRDAERLIEGG 1xm3A 78 :AEEAVRIARLAKASG T0355 61 :MHGLIVE 1xm3A 94 :CDMIKVE T0355 148 :AEAM 1xm3A 107 :SLLP T0355 152 :RYRSLLRAEHIKVFADSHVKH 1xm3A 113 :VETLKASEQLLEEGFIVLPYT T0355 177 :ITADRSIDELTR 1xm3A 134 :SDDVVLARKLEE T0355 193 :FDADGVIATGQRTGNSA 1xm3A 146 :LGVHAIMPGASPIGSGQ T0355 210 :SLEEIEEIGAATHLPLLVGSGV 1xm3A 166 :NPLNLSFIIEQAKVPVIVDAGI T0355 232 :NEGNIVEILKR 1xm3A 189 :SPKDAAYAMEL T0355 243 :TSGVIVASSLKEG 1xm3A 201 :ADGVLLNTAVSGA T0355 261 :PVELARVRSFVAAARPGLEALEHHHHHH 1xm3A 214 :DDPVKMARAMKLAVEAGRLSYEAGRIPL Number of specific fragments extracted= 12 number of extra gaps= 0 total=2465 Number of alignments=152 # 1xm3A read from 1xm3A/merged-good-all-a2m # found chain 1xm3A in training set T0355 20 :KALIGM 1xm3A 66 :YTLLPN T0355 34 :APRYR 1xm3A 72 :TAGAS T0355 41 :SMDA 1xm3A 77 :TAEE T0355 49 :CMRDAERLIEGG 1xm3A 81 :AVRIARLAKASG T0355 61 :MHGLIVENHGD 1xm3A 94 :CDMIKVEVIGC T0355 75 :SKPDDIGPETSA 1xm3A 105 :SRSLLPDPVETL T0355 90 :VVTDRIVR 1xm3A 117 :KASEQLLE T0355 160 :EHIKVFADSHVK 1xm3A 125 :EGFIVLPYTSDD T0355 184 :DELTRDLAFFDADGVIATGQRTGNS 1xm3A 137 :VVLARKLEELGVHAIMPGASPIGSG T0355 209 :ASLEEIEEIGAATHLPLLVGSGV 1xm3A 165 :LNPLNLSFIIEQAKVPVIVDAGI T0355 232 :NEGNIVEILKR 1xm3A 189 :SPKDAAYAMEL T0355 243 :TSGVIVASSLKEGGV 1xm3A 201 :ADGVLLNTAVSGADD T0355 264 :LARVRSFVAAARPGLEALEHHHHHH 1xm3A 217 :VKMARAMKLAVEAGRLSYEAGRIPL Number of specific fragments extracted= 13 number of extra gaps= 0 total=2478 Number of alignments=153 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ep3A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ep3A expands to /projects/compbio/data/pdb/1ep3.pdb.gz 1ep3A:# T0355 read from 1ep3A/merged-good-all-a2m # 1ep3A read from 1ep3A/merged-good-all-a2m # adding 1ep3A to template set # found chain 1ep3A in template set Warning: unaligning (T0355)A147 because of BadResidue code BAD_PEPTIDE in next template residue (1ep3A)I196 Warning: unaligning (T0355)A148 because of BadResidue code BAD_PEPTIDE at template residue (1ep3A)I196 T0355 9 :ANAIQEIFG 1ep3A 89 :LPWLNENFP T0355 19 :SKALIGMIHCPA 1ep3A 98 :ELPIIANVAGSE T0355 46 :YDACMRDAERLIE 1ep3A 110 :EADYVAVCAKIGD T0355 59 :GGMHGLIVE 1ep3A 124 :ANVKAIELN T0355 70 :GDVPFSKPD 1ep3A 133 :ISCPNVKHG T0355 79 :DIGPETSAF 1ep3A 147 :TDPEVAAAL T0355 105 :INVLANAPIPAFAIAKAGGAK 1ep3A 156 :VKACKAVSKVPLYVKLSPNVT T0355 128 :RVNQWAN 1ep3A 177 :DIVPIAK T0355 136 :YVANEGFMEGR 1ep3A 184 :AVEAAGADGLT T0355 149 :EAM 1ep3A 197 :NTL T0355 164 :VFADSHVKHGAHAIT 1ep3A 200 :MGVRFDLKTRQPILA T0355 180 :DRS 1ep3A 215 :NIT T0355 198 :VIATGQR 1ep3A 218 :GGLSGPA T0355 206 :GNSASLEEIEEIGAATHLPLLVGSGV 1ep3A 225 :IKPVALKLIHQVAQDVDIPIIGMGGV T0355 232 :NEGNIVEILKR 1ep3A 252 :NAQDVLEMYMA T0355 243 :TSGVIVASSLKEGGVW 1ep3A 264 :ASAVAVGTANFADPFV T0355 260 :NPVELARVRSFVAA 1ep3A 280 :CPKIIDKLPELMDQ T0355 274 :ARPGLEALEHH 1ep3A 299 :LESLIQEVKEG Number of specific fragments extracted= 18 number of extra gaps= 1 total=2496 Number of alignments=154 # 1ep3A read from 1ep3A/merged-good-all-a2m # found chain 1ep3A in template set Warning: unaligning (T0355)A147 because of BadResidue code BAD_PEPTIDE in next template residue (1ep3A)I196 Warning: unaligning (T0355)A148 because of BadResidue code BAD_PEPTIDE at template residue (1ep3A)I196 T0355 3 :TISDNAANAIQEIFG 1ep3A 83 :VIMTEKLPWLNENFP T0355 19 :SKALIGMIHCPA 1ep3A 98 :ELPIIANVAGSE T0355 46 :YDACMRDAERLIE 1ep3A 110 :EADYVAVCAKIGD T0355 59 :GGMHGLIVE 1ep3A 124 :ANVKAIELN T0355 70 :GDVPFSKPD 1ep3A 133 :ISCPNVKHG T0355 79 :DIGPETSA 1ep3A 147 :TDPEVAAA T0355 104 :GINVLANAPIPAFAIAKAGGAK 1ep3A 155 :LVKACKAVSKVPLYVKLSPNVT T0355 128 :RVNQWANA 1ep3A 177 :DIVPIAKA T0355 137 :VANEGFMEGR 1ep3A 185 :VEAAGADGLT T0355 149 :E 1ep3A 197 :N T0355 170 :VKHGA 1ep3A 198 :TLMGV T0355 177 :ITADRS 1ep3A 203 :RFDLKT T0355 191 :AFFDA 1ep3A 210 :QPILA T0355 196 :DGVIATGQRTG 1ep3A 216 :ITGGLSGPAIK T0355 208 :SASLEEIEEIGAATHLPLLVGSGV 1ep3A 227 :PVALKLIHQVAQDVDIPIIGMGGV T0355 232 :NEGNIVEILKR 1ep3A 252 :NAQDVLEMYMA T0355 243 :TSGVIVASSLKEGGVWW 1ep3A 264 :ASAVAVGTANFADPFVC T0355 261 :PVELARVRSFVAA 1ep3A 281 :PKIIDKLPELMDQ T0355 274 :ARPGLEALEHHH 1ep3A 299 :LESLIQEVKEGK Number of specific fragments extracted= 19 number of extra gaps= 1 total=2515 Number of alignments=155 # 1ep3A read from 1ep3A/merged-good-all-a2m # found chain 1ep3A in template set Warning: unaligning (T0355)A200 because of BadResidue code BAD_PEPTIDE in next template residue (1ep3A)I196 Warning: unaligning (T0355)T201 because of BadResidue code BAD_PEPTIDE at template residue (1ep3A)I196 T0355 4 :ISDNAANAIQEIFG 1ep3A 84 :IMTEKLPWLNENFP T0355 19 :SKALIGMIH 1ep3A 98 :ELPIIANVA T0355 39 :NASMDAI 1ep3A 107 :GSEEADY T0355 50 :MRDAERLIEG 1ep3A 114 :VAVCAKIGDA T0355 60 :GMHGLIVENH 1ep3A 125 :NVKAIELNIS T0355 72 :VPFSKPDD 1ep3A 135 :CPNVKHGG T0355 80 :IGPETSA 1ep3A 147 :TDPEVAA T0355 90 :VVTDRIVRTAGVPVGINVLANA 1ep3A 154 :ALVKACKAVSKVPLYVKLSPNV T0355 181 :RSIDELTRDLAFFDADGVI 1ep3A 176 :TDIVPIAKAVEAAGADGLT T0355 202 :G 1ep3A 197 :N T0355 203 :QRTGNSA 1ep3A 206 :LKTRQPI T0355 211 :LEEIEEIGAATHLPLLVGSGV 1ep3A 230 :LKLIHQVAQDVDIPIIGMGGV T0355 232 :NEGNIVEILKR 1ep3A 252 :NAQDVLEMYMA T0355 243 :TSGVIVASSLKE 1ep3A 264 :ASAVAVGTANFA T0355 263 :E 1ep3A 276 :D T0355 266 :RVRSFVAAARPGLEALE 1ep3A 279 :VCPKIIDKLPELMDQYR Number of specific fragments extracted= 16 number of extra gaps= 1 total=2531 Number of alignments=156 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xc4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0355/1xc4A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0355/1xc4A/merged-good-all-a2m.gz for input Trying 1xc4A/merged-good-all-a2m Error: Couldn't open file 1xc4A/merged-good-all-a2m or 1xc4A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1vlwA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1vlwA expands to /projects/compbio/data/pdb/1vlw.pdb.gz 1vlwA:# T0355 read from 1vlwA/merged-good-all-a2m # 1vlwA read from 1vlwA/merged-good-all-a2m # adding 1vlwA to template set # found chain 1vlwA in template set Warning: unaligning (T0355)A8 because first residue in template chain is (1vlwA)H-1 Warning: unaligning (T0355)S19 because of BadResidue code BAD_PEPTIDE in next template residue (1vlwA)K11 Warning: unaligning (T0355)K20 because of BadResidue code BAD_PEPTIDE at template residue (1vlwA)K11 Warning: unaligning (T0355)G70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vlwA)T44 Warning: unaligning (T0355)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vlwA)T44 Warning: unaligning (T0355)V227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vlwA)T156 Warning: unaligning (T0355)G228 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vlwA)T156 T0355 9 :ANAIQEIFGR 1vlwA 0 :HMKMEELFKK T0355 22 :LIGMIHCPA 1vlwA 12 :IVAVLRANS T0355 46 :YDACMRDAERLIEGGMHGLIVE 1vlwA 21 :VEEAKEKALAVFEGGVHLIEIT T0355 72 :V 1vlwA 45 :V T0355 79 :DIGPETSA 1vlwA 46 :PDADTVIK T0355 104 :GINVLANAPIPAFAI 1vlwA 54 :ELSFLKEKGAIIGAG T0355 128 :RVN 1vlwA 69 :TVT T0355 131 :QWAN 1vlwA 74 :EQCR T0355 136 :YVANEGFMEGRAAEAMRYR 1vlwA 78 :KAVESGAEFIVSPHLDEEI T0355 155 :SLLRAEHIKVFADSHV 1vlwA 98 :QFCKEKGVFYMPGVMT T0355 174 :AHAIT 1vlwA 114 :PTELV T0355 182 :SIDEL 1vlwA 119 :KAMKL T0355 189 :DLAF 1vlwA 124 :GHTI T0355 198 :VIAT 1vlwA 128 :LKLF T0355 202 :G 1vlwA 133 :G T0355 207 :NSASLEEIEEIGAATH 1vlwA 134 :EVVGPQFVKAMKGPFP T0355 223 :LPLL 1vlwA 151 :VKFV T0355 229 :SGVNEGNIVEILKR 1vlwA 157 :GGVNLDNVCEWFKA T0355 243 :TSGVIVASSLKEG 1vlwA 172 :VLAVGVGSALVKG T0355 259 :WNPVELARVRSFVAAARP 1vlwA 185 :TPDEVREKAKAFVEKIRG Number of specific fragments extracted= 20 number of extra gaps= 3 total=2551 Number of alignments=157 # 1vlwA read from 1vlwA/merged-good-all-a2m # found chain 1vlwA in template set Warning: unaligning (T0355)A8 because first residue in template chain is (1vlwA)H-1 Warning: unaligning (T0355)K20 because of BadResidue code BAD_PEPTIDE in next template residue (1vlwA)K11 Warning: unaligning (T0355)A21 because of BadResidue code BAD_PEPTIDE at template residue (1vlwA)K11 Warning: unaligning (T0355)G70 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vlwA)T44 Warning: unaligning (T0355)D71 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vlwA)T44 Warning: unaligning (T0355)V227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vlwA)T156 Warning: unaligning (T0355)G228 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vlwA)T156 T0355 9 :ANAIQEIFG 1vlwA 0 :HMKMEELFK T0355 19 :S 1vlwA 9 :K T0355 22 :LIGMIHCPA 1vlwA 12 :IVAVLRANS T0355 46 :YDACMRDAERLIEGGMHGLIVE 1vlwA 21 :VEEAKEKALAVFEGGVHLIEIT T0355 72 :VP 1vlwA 45 :VP T0355 100 :GVPVGINV 1vlwA 47 :DADTVIKE T0355 108 :LANAPIP 1vlwA 58 :LKEKGAI T0355 116 :FAI 1vlwA 65 :IGA T0355 120 :KAGGA 1vlwA 68 :GTVTS T0355 130 :NQWANA 1vlwA 73 :VEQCRK T0355 137 :VANEGFMEGRAAEA 1vlwA 79 :AVESGAEFIVSPHL T0355 154 :RSLLRAEHIKVFADSHVK 1vlwA 93 :DEEISQFCKEKGVFYMPG T0355 177 :ITADRSIDELTR 1vlwA 111 :VMTPTELVKAMK T0355 193 :FDADGVIAT 1vlwA 123 :LGHTILKLF T0355 206 :GNSASLEEIEEIGAAT 1vlwA 133 :GEVVGPQFVKAMKGPF T0355 222 :HLPLL 1vlwA 150 :NVKFV T0355 229 :SGVNEGNIVEILKR 1vlwA 157 :GGVNLDNVCEWFKA T0355 243 :TSGVIVASSLKEG 1vlwA 172 :VLAVGVGSALVKG T0355 259 :WNPVELARVRSFVAAARP 1vlwA 185 :TPDEVREKAKAFVEKIRG Number of specific fragments extracted= 19 number of extra gaps= 3 total=2570 Number of alignments=158 # 1vlwA read from 1vlwA/merged-good-all-a2m # found chain 1vlwA in template set Warning: unaligning (T0355)I15 because of BadResidue code BAD_PEPTIDE in next template residue (1vlwA)K11 Warning: unaligning (T0355)A21 because of BadResidue code BAD_PEPTIDE at template residue (1vlwA)K11 Warning: unaligning (T0355)N68 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vlwA)T44 Warning: unaligning (T0355)H69 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vlwA)T44 Warning: unaligning (T0355)V227 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1vlwA)T156 Warning: unaligning (T0355)G228 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1vlwA)T156 T0355 6 :DNAANAIQE 1vlwA 1 :MKMEELFKK T0355 22 :LIGMIHC 1vlwA 12 :IVAVLRA T0355 40 :ASMDAI 1vlwA 19 :NSVEEA T0355 50 :MRDAERLIEGGMHGLIVE 1vlwA 25 :KEKALAVFEGGVHLIEIT T0355 80 :IGPE 1vlwA 45 :VPDA T0355 89 :SVVTDRIVRTA 1vlwA 49 :DTVIKELSFLK T0355 100 :GVPVGIN 1vlwA 62 :GAIIGAG T0355 109 :ANAPIPAFAIAKAGGAKFIR 1vlwA 69 :TVTSVEQCRKAVESGAEFIV T0355 139 :NEG 1vlwA 89 :SPH T0355 143 :MEG 1vlwA 92 :LDE T0355 149 :EAMRYRSLLR 1vlwA 95 :EISQFCKEKG T0355 162 :IKVFADSHV 1vlwA 105 :VFYMPGVMT T0355 184 :DELTRDLAFFDADGVIA 1vlwA 114 :PTELVKAMKLGHTILKL T0355 205 :TGNSASLEEIEEIGA 1vlwA 132 :PGEVVGPQFVKAMKG T0355 220 :ATHLPLL 1vlwA 148 :FPNVKFV T0355 229 :SGVNEGNIVEILKR 1vlwA 157 :GGVNLDNVCEWFKA T0355 243 :TSGVIVASSLKEG 1vlwA 172 :VLAVGVGSALVKG T0355 263 :E 1vlwA 185 :T T0355 264 :LARVRSFVAAARP 1vlwA 190 :REKAKAFVEKIRG Number of specific fragments extracted= 19 number of extra gaps= 3 total=2589 Number of alignments=159 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0355//projects/compbio/experiments/protein-predict/casp7/T0355/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0355//projects/compbio/experiments/protein-predict/casp7/T0355/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0355/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0355/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0355)L225.CB, (T0355)S244.CB) [> 3.3458 = 5.5763 < 7.2492] w=1.0000 to align # Constraint # added constraint: constraint((T0355)L226.CB, (T0355)G245.CA) [> 3.0228 = 5.0380 < 6.5493] w=1.0000 to align # Constraint # added constraint: constraint((T0355)L226.CB, (T0355)I247.CB) [> 3.4654 = 5.7756 < 7.5083] w=0.9955 to align # Constraint # added constraint: constraint((T0355)L225.CB, (T0355)T243.CB) [> 3.1033 = 5.1722 < 6.7239] w=0.9934 to align # Constraint # added constraint: constraint((T0355)L226.CB, (T0355)V246.CB) [> 4.1590 = 6.9317 < 9.0111] w=0.9934 to align # Constraint # added constraint: constraint((T0355)L226.CB, (T0355)T243.CB) [> 3.9653 = 6.6088 < 8.5915] w=0.9879 to align # Constraint # added constraint: constraint((T0355)P224.CB, (T0355)S244.CB) [> 2.7478 = 4.5797 < 5.9537] w=0.9879 to align # Constraint # added constraint: constraint((T0355)V227.CB, (T0355)I247.CB) [> 4.1340 = 6.8901 < 8.9571] w=0.9813 to align # Constraint # added constraint: constraint((T0355)V227.CB, (T0355)V246.CB) [> 3.1508 = 5.2513 < 6.8267] w=0.9802 to align # Constraint # added constraint: constraint((T0355)V227.CB, (T0355)G245.CA) [> 3.8920 = 6.4866 < 8.4326] w=0.9681 to align # Constraint # added constraint: constraint((T0355)G228.CA, (T0355)I247.CB) [> 2.6855 = 4.4758 < 5.8185] w=0.9604 to align # Constraint # added constraint: constraint((T0355)V227.CB, (T0355)T243.CB) [> 2.6936 = 4.4893 < 5.8361] w=0.9570 to align # Constraint # added constraint: constraint((T0355)G228.CA, (T0355)V246.CB) [> 3.9374 = 6.5624 < 8.5311] w=0.9549 to align # Constraint # added constraint: constraint((T0355)I236.CB, (T0355)V246.CB) [> 3.3872 = 5.6453 < 7.3389] w=0.9439 to align # Constraint # added constraint: constraint((T0355)V227.CB, (T0355)I239.CB) [> 2.8711 = 4.7851 < 6.2206] w=0.9438 to align # Constraint # added constraint: constraint((T0355)V231.CB, (T0355)V246.CB) [> 3.4350 = 5.7250 < 7.4425] w=0.9242 to align # Constraint # added constraint: constraint((T0355)V231.CB, (T0355)V248.CB) [> 2.9788 = 4.9647 < 6.4542] w=0.9222 to align # Constraint # added constraint: constraint((T0355)L225.CB, (T0355)G245.CA) [> 4.4016 = 7.3359 < 9.5367] w=0.9191 to align # Constraint # added constraint: constraint((T0355)L226.CB, (T0355)S244.CB) [> 3.8146 = 6.3577 < 8.2650] w=0.8890 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)L64.CB) [> 3.4606 = 5.7676 < 7.4979] w=0.8618 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)I247.CB) [> 3.6545 = 6.0908 < 7.9180] w=0.8384 to align # Constraint # added constraint: constraint((T0355)I214.CB, (T0355)T243.CB) [> 3.5508 = 5.9180 < 7.6934] w=0.8357 to align # Constraint # added constraint: constraint((T0355)I214.CB, (T0355)V227.CB) [> 3.5964 = 5.9940 < 7.7922] w=0.8234 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)I105.CB) [> 3.5123 = 5.8539 < 7.6101] w=0.8154 to align # Constraint # added constraint: constraint((T0355)V231.CB, (T0355)S251.CB) [> 3.7349 = 6.2248 < 8.0922] w=0.8054 to align # Constraint # added constraint: constraint((T0355)I214.CB, (T0355)R242.CB) [> 3.0055 = 5.0091 < 6.5119] w=0.7992 to align # Constraint # added constraint: constraint((T0355)E215.CB, (T0355)R242.CB) [> 3.1568 = 5.2614 < 6.8398] w=0.7839 to align # Constraint # added constraint: constraint((T0355)G228.CA, (T0355)V248.CB) [> 4.4028 = 7.3379 < 9.5393] w=0.7751 to align # Constraint # added constraint: constraint((T0355)I214.CB, (T0355)I239.CB) [> 3.9800 = 6.6333 < 8.6233] w=0.7545 to align # Constraint # added constraint: constraint((T0355)L211.CB, (T0355)R242.CB) [> 3.1952 = 5.3254 < 6.9230] w=0.7400 to align # Constraint # added constraint: constraint((T0355)I214.CB, (T0355)L225.CB) [> 3.8830 = 6.4717 < 8.4131] w=0.7193 to align # Constraint # added constraint: constraint((T0355)L211.CB, (T0355)I239.CB) [> 4.0469 = 6.7448 < 8.7682] w=0.6973 to align # Constraint # added constraint: constraint((T0355)M25.CB, (T0355)I65.CB) [> 3.4300 = 5.7167 < 7.4317] w=0.6862 to align # Constraint # added constraint: constraint((T0355)V231.CB, (T0355)I247.CB) [> 4.2532 = 7.0886 < 9.2152] w=0.6810 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)M61.CB) [> 3.7354 = 6.2257 < 8.0934] w=0.6796 to align # Constraint # added constraint: constraint((T0355)G24.CA, (T0355)I65.CB) [> 3.4658 = 5.7764 < 7.5093] w=0.6796 to align # Constraint # added constraint: constraint((T0355)L211.CB, (T0355)E238.CB) [> 3.6379 = 6.0632 < 7.8822] w=0.6720 to align # Constraint # added constraint: constraint((T0355)L252.CB, (T0355)V267.CB) [> 3.5246 = 5.8744 < 7.6367] w=0.6599 to align # Constraint # added constraint: constraint((T0355)G24.CA, (T0355)L64.CB) [> 3.7098 = 6.1830 < 8.0379] w=0.6599 to align # Constraint # added constraint: constraint((T0355)G230.CA, (T0355)S250.CB) [> 4.1844 = 6.9741 < 9.0663] w=0.6585 to align # Constraint # added constraint: constraint((T0355)I199.CB, (T0355)L226.CB) [> 2.8670 = 4.7783 < 6.2118] w=0.6438 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)G63.CA) [> 3.5884 = 5.9806 < 7.7748] w=0.6401 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)L226.CB) [> 4.0316 = 6.7194 < 8.7352] w=0.6362 to align # Constraint # added constraint: constraint((T0355)G24.CA, (T0355)M61.CB) [> 3.3338 = 5.5562 < 7.2231] w=0.6335 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)L225.CB) [> 3.4197 = 5.6994 < 7.4093] w=0.6297 to align # Constraint # added constraint: constraint((T0355)G230.CA, (T0355)S251.CB) [> 4.2242 = 7.0403 < 9.1523] w=0.6278 to align # Constraint # added constraint: constraint((T0355)G197.CA, (T0355)P224.CB) [> 2.9341 = 4.8901 < 6.3571] w=0.6241 to align # Constraint # added constraint: constraint((T0355)G24.CA, (T0355)G63.CA) [> 3.4899 = 5.8166 < 7.5615] w=0.6203 to align # Constraint # added constraint: constraint((T0355)N232.CB, (T0355)S251.CB) [> 3.6260 = 6.0433 < 7.8563] w=0.6193 to align # Constraint # added constraint: constraint((T0355)I199.CB, (T0355)G228.CA) [> 3.8699 = 6.4498 < 8.3848] w=0.6120 to align # Constraint # added constraint: constraint((T0355)A117.CB, (T0355)G145.CA) [> 3.3980 = 5.6633 < 7.3623] w=0.6073 to align # Constraint # added constraint: constraint((T0355)I236.CB, (T0355)A274.CB) [> 3.6652 = 6.1086 < 7.9412] w=0.6072 to align # Constraint # added constraint: constraint((T0355)G197.CA, (T0355)L225.CB) [> 4.1580 = 6.9300 < 9.0089] w=0.6054 to align # Constraint # added constraint: constraint((T0355)P224.CB, (T0355)G245.CA) [> 4.3535 = 7.2558 < 9.4325] w=0.6051 to align # Constraint # added constraint: constraint((T0355)G197.CA, (T0355)L223.CB) [> 3.0964 = 5.1607 < 6.7089] w=0.6043 to align # Constraint # added constraint: constraint((T0355)G24.CA, (T0355)I247.CB) [> 3.5202 = 5.8670 < 7.6271] w=0.6006 to align # Constraint # added constraint: constraint((T0355)G24.CA, (T0355)V248.CB) [> 3.6928 = 6.1547 < 8.0011] w=0.5993 to align # Constraint # added constraint: constraint((T0355)G197.CA, (T0355)L226.CB) [> 4.0581 = 6.7635 < 8.7926] w=0.5988 to align # Constraint # added constraint: constraint((T0355)A117.CB, (T0355)R146.CB) [> 3.7864 = 6.3108 < 8.2040] w=0.5941 to align # Constraint # added constraint: constraint((T0355)I118.CB, (T0355)G145.CA) [> 3.2113 = 5.3521 < 6.9577] w=0.5941 to align # Constraint # added constraint: constraint((T0355)I118.CB, (T0355)R146.CB) [> 3.9175 = 6.5292 < 8.4879] w=0.5941 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)I65.CB) [> 3.4830 = 5.8051 < 7.5466] w=0.5940 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)G104.CA) [> 3.9081 = 6.5135 < 8.4676] w=0.5921 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)A117.CB) [> 3.1104 = 5.1841 < 6.7393] w=0.5920 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)P224.CB) [> 4.3157 = 7.1928 < 9.3506] w=0.5904 to align # Constraint # added constraint: constraint((T0355)A117.CB, (T0355)E144.CB) [> 2.8911 = 4.8184 < 6.2639] w=0.5875 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)V248.CB) [> 4.2034 = 7.0057 < 9.1074] w=0.5861 to align # Constraint # added constraint: constraint((T0355)F116.CB, (T0355)M143.CB) [> 3.2749 = 5.4582 < 7.0957] w=0.5809 to align # Constraint # added constraint: constraint((T0355)F116.CB, (T0355)F142.CB) [> 3.3306 = 5.5509 < 7.2162] w=0.5809 to align # Constraint # added constraint: constraint((T0355)V248.CB, (T0355)F270.CB) [> 3.8724 = 6.4539 < 8.3901] w=0.5797 to align # Constraint # added constraint: constraint((T0355)E233.CB, (T0355)F270.CB) [> 3.4969 = 5.8282 < 7.5766] w=0.5775 to align # Constraint # added constraint: constraint((T0355)L56.CB, (T0355)L252.CB) [> 4.1723 = 6.9538 < 9.0399] w=0.5752 to align # Constraint # added constraint: constraint((T0355)G230.CA, (T0355)V248.CB) [> 4.5074 = 7.5124 < 9.7661] w=0.5729 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)I118.CB) [> 3.4458 = 5.7430 < 7.4658] w=0.5722 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)P114.CB) [> 2.9269 = 4.8782 < 6.3417] w=0.5721 to align # Constraint # added constraint: constraint((T0355)T201.CB, (T0355)S229.CB) [> 3.1158 = 5.1930 < 6.7509] w=0.5718 to align # Constraint # added constraint: constraint((T0355)I236.CB, (T0355)F270.CB) [> 3.4691 = 5.7819 < 7.5164] w=0.5709 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)L223.CB) [> 3.4540 = 5.7566 < 7.4836] w=0.5707 to align # Constraint # added constraint: constraint((T0355)A200.CB, (T0355)V227.CB) [> 3.5678 = 5.9463 < 7.7302] w=0.5697 to align # Constraint # added constraint: constraint((T0355)A115.CB, (T0355)M143.CB) [> 2.7143 = 4.5239 < 5.8810] w=0.5677 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)V246.CB) [> 3.8071 = 6.3452 < 8.2487] w=0.5676 to align # Constraint # added constraint: constraint((T0355)M25.CB, (T0355)V248.CB) [> 3.8552 = 6.4254 < 8.3530] w=0.5663 to align # Constraint # added constraint: constraint((T0355)D196.CB, (T0355)P224.CB) [> 3.9063 = 6.5105 < 8.4637] w=0.5659 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)A117.CB) [> 4.1237 = 6.8728 < 8.9347] w=0.5656 to align # Constraint # added constraint: constraint((T0355)A200.CB, (T0355)G228.CA) [> 3.8656 = 6.4427 < 8.3756] w=0.5642 to align # Constraint # added constraint: constraint((T0355)T201.CB, (T0355)G228.CA) [> 3.3108 = 5.5181 < 7.1735] w=0.5630 to align # Constraint # added constraint: constraint((T0355)E233.CB, (T0355)A273.CB) [> 3.0168 = 5.0279 < 6.5363] w=0.5611 to align # Constraint # added constraint: constraint((T0355)A117.CB, (T0355)F142.CB) [> 3.8803 = 6.4672 < 8.4073] w=0.5611 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)H62.CB) [> 3.7005 = 6.1675 < 8.0178] w=0.5610 to align # Constraint # added constraint: constraint((T0355)I236.CB, (T0355)V248.CB) [> 4.4479 = 7.4132 < 9.6371] w=0.5600 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)F116.CB) [> 3.3358 = 5.5596 < 7.2275] w=0.5590 to align # Constraint # added constraint: constraint((T0355)D196.CB, (T0355)L223.CB) [> 3.7363 = 6.2272 < 8.0953] w=0.5582 to align # Constraint # added constraint: constraint((T0355)L22.CB, (T0355)V246.CB) [> 3.8098 = 6.3497 < 8.2546] w=0.5544 to align # Constraint # added constraint: constraint((T0355)L22.CB, (T0355)G245.CA) [> 3.5566 = 5.9277 < 7.7060] w=0.5544 to align # Constraint # added constraint: constraint((T0355)M25.CB, (T0355)A249.CB) [> 3.3289 = 5.5482 < 7.2126] w=0.5531 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)P114.CB) [> 3.6251 = 6.0419 < 7.8545] w=0.5524 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)F116.CB) [> 3.8778 = 6.4630 < 8.4019] w=0.5524 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)F116.CB) [> 4.2000 = 6.9999 < 9.0999] w=0.5524 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)A115.CB) [> 3.1049 = 5.1748 < 6.7273] w=0.5524 to align # Constraint # added constraint: constraint((T0355)L56.CB, (T0355)V267.CB) [> 3.5389 = 5.8982 < 7.6677] w=0.5480 to align # Constraint # added constraint: constraint((T0355)F116.CB, (T0355)E144.CB) [> 4.1162 = 6.8604 < 8.9185] w=0.5479 to align # Constraint # added constraint: constraint((T0355)L22.CB, (T0355)H62.CB) [> 3.1701 = 5.2836 < 6.8686] w=0.5478 to align # Constraint # added constraint: constraint((T0355)H62.CB, (T0355)P114.CB) [> 3.9806 = 6.6343 < 8.6247] w=0.5458 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)G245.CA) [> 4.1021 = 6.8368 < 8.8879] w=0.5413 to align # Constraint # added constraint: constraint((T0355)A200.CB, (T0355)L225.CB) [> 3.7378 = 6.2296 < 8.0985] w=0.5398 to align # Constraint # added constraint: constraint((T0355)E233.CB, (T0355)S269.CB) [> 3.4426 = 5.7377 < 7.4590] w=0.5334 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)A115.CB) [> 4.2392 = 7.0653 < 9.1849] w=0.5327 to align # Constraint # added constraint: constraint((T0355)A200.CB, (T0355)L226.CB) [> 4.1668 = 6.9447 < 9.0281] w=0.5321 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)L64.CB) [> 4.1706 = 6.9511 < 9.0364] w=0.5280 to align # Constraint # added constraint: constraint((T0355)I199.CB, (T0355)I247.CB) [> 4.0008 = 6.6681 < 8.6685] w=0.5267 to align # Constraint # added constraint: constraint((T0355)G202.CA, (T0355)S229.CB) [> 3.2174 = 5.3624 < 6.9711] w=0.5246 to align # Constraint # added constraint: constraint((T0355)L190.CB, (T0355)L223.CB) [> 3.7930 = 6.3217 < 8.2182] w=0.5225 to align # Constraint # added constraint: constraint((T0355)N106.CB, (T0355)E140.CB) [> 3.1967 = 5.3278 < 6.9261] w=0.5222 to align # Constraint # added constraint: constraint((T0355)A115.CB, (T0355)E144.CB) [> 4.0734 = 6.7890 < 8.8257] w=0.5215 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)V66.CB) [> 3.9149 = 6.5249 < 8.4824] w=0.5214 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)A249.CB) [> 3.3280 = 5.5466 < 7.2106] w=0.5202 to align # Constraint # added constraint: constraint((T0355)S229.CB, (T0355)I247.CB) [> 4.3627 = 7.2712 < 9.4526] w=0.5178 to align # Constraint # added constraint: constraint((T0355)M25.CB, (T0355)L64.CB) [> 3.9493 = 6.5822 < 8.5569] w=0.5138 to align # Constraint # added constraint: constraint((T0355)A119.CB, (T0355)R146.CB) [> 2.9566 = 4.9276 < 6.4059] w=0.5084 to align # Constraint # added constraint: constraint((T0355)A195.CB, (T0355)L223.CB) [> 3.8306 = 6.3843 < 8.2997] w=0.5075 to align # Constraint # added constraint: constraint((T0355)M61.CB, (T0355)V267.CB) [> 3.5319 = 5.8865 < 7.6525] w=0.5070 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)L108.CB) [> 3.2941 = 5.4902 < 7.1373] w=0.5065 to align # Constraint # added constraint: constraint((T0355)L22.CB, (T0355)G63.CA) [> 4.3364 = 7.2274 < 9.3956] w=0.5019 to align # Constraint # added constraint: constraint((T0355)D184.CB, (T0355)A220.CB) [> 3.5299 = 5.8831 < 7.6480] w=0.5009 to align # Constraint # added constraint: constraint((T0355)A117.CB, (T0355)M143.CB) [> 3.8942 = 6.4903 < 8.4374] w=0.4953 to align # Constraint # added constraint: constraint((T0355)I118.CB, (T0355)F142.CB) [> 2.8558 = 4.7596 < 6.1875] w=0.4952 to align # Constraint # added constraint: constraint((T0355)A119.CB, (T0355)G145.CA) [> 4.0638 = 6.7730 < 8.8049] w=0.4952 to align # Constraint # added constraint: constraint((T0355)G59.CA, (T0355)R268.CB) [> 3.4100 = 5.6834 < 7.3885] w=0.4952 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)A117.CB) [> 4.0962 = 6.8269 < 8.8750] w=0.4932 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)A117.CB) [> 4.1352 = 6.8921 < 8.9597] w=0.4932 to align # Constraint # added constraint: constraint((T0355)I199.CB, (T0355)L225.CB) [> 4.4300 = 7.3833 < 9.5982] w=0.4922 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)E140.CB) [> 2.8497 = 4.7495 < 6.1743] w=0.4886 to align # Constraint # added constraint: constraint((T0355)A200.CB, (T0355)I217.CB) [> 3.5902 = 5.9836 < 7.7787] w=0.4871 to align # Constraint # added constraint: constraint((T0355)V227.CB, (T0355)R242.CB) [> 4.5157 = 7.5261 < 9.7839] w=0.4829 to align # Constraint # added constraint: constraint((T0355)I118.CB, (T0355)V137.CB) [> 3.1260 = 5.2101 < 6.7731] w=0.4821 to align # Constraint # added constraint: constraint((T0355)I183.CB, (T0355)I217.CB) [> 3.6928 = 6.1547 < 8.0010] w=0.4821 to align # Constraint # added constraint: constraint((T0355)A21.CB, (T0355)G245.CA) [> 3.1301 = 5.2168 < 6.7819] w=0.4820 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)A249.CB) [> 4.3182 = 7.1970 < 9.3561] w=0.4808 to align # Constraint # added constraint: constraint((T0355)V237.CB, (T0355)A273.CB) [> 3.6118 = 6.0196 < 7.8255] w=0.4807 to align # Constraint # added constraint: constraint((T0355)M61.CB, (T0355)P114.CB) [> 3.9653 = 6.6089 < 8.5916] w=0.4800 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)I118.CB) [> 3.7396 = 6.2326 < 8.1024] w=0.4786 to align # Constraint # added constraint: constraint((T0355)L252.CB, (T0355)F270.CB) [> 4.0644 = 6.7739 < 8.8061] w=0.4756 to align # Constraint # added constraint: constraint((T0355)L240.CB, (T0355)A274.CB) [> 3.6803 = 6.1339 < 7.9741] w=0.4741 to align # Constraint # added constraint: constraint((T0355)A109.CB, (T0355)E140.CB) [> 3.8443 = 6.4071 < 8.3293] w=0.4695 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)E67.CB) [> 3.9739 = 6.6231 < 8.6101] w=0.4689 to align # Constraint # added constraint: constraint((T0355)I118.CB, (T0355)E144.CB) [> 4.2254 = 7.0423 < 9.1550] w=0.4623 to align # Constraint # added constraint: constraint((T0355)G60.CA, (T0355)V271.CB) [> 3.3995 = 5.6659 < 7.3656] w=0.4622 to align # Constraint # added constraint: constraint((T0355)G218.CA, (T0355)R242.CB) [> 3.9878 = 6.6464 < 8.6404] w=0.4577 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)F142.CB) [> 3.5726 = 5.9543 < 7.7405] w=0.4558 to align # Constraint # added constraint: constraint((T0355)G202.CA, (T0355)G230.CA) [> 3.8158 = 6.3597 < 8.2676] w=0.4521 to align # Constraint # added constraint: constraint((T0355)K120.CB, (T0355)R146.CB) [> 4.1133 = 6.8555 < 8.9122] w=0.4491 to align # Constraint # added constraint: constraint((T0355)A21.CB, (T0355)V246.CB) [> 4.2411 = 7.0685 < 9.1891] w=0.4491 to align # Constraint # added constraint: constraint((T0355)A166.CB, (T0355)L190.CB) [> 2.9921 = 4.9868 < 6.4829] w=0.4467 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)I247.CB) [> 3.2934 = 5.4890 < 7.1358] w=0.4425 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)F116.CB) [> 3.8770 = 6.4617 < 8.4002] w=0.4404 to align # Constraint # added constraint: constraint((T0355)S251.CB, (T0355)F270.CB) [> 4.2419 = 7.0698 < 9.1907] w=0.4361 to align # Constraint # added constraint: constraint((T0355)M25.CB, (T0355)I247.CB) [> 3.5415 = 5.9024 < 7.6731] w=0.4360 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)I65.CB) [> 3.4390 = 5.7317 < 7.4512] w=0.4359 to align # Constraint # added constraint: constraint((T0355)T187.CB, (T0355)T221.CB) [> 3.5040 = 5.8400 < 7.5920] w=0.4343 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)A119.CB) [> 4.0524 = 6.7541 < 8.7803] w=0.4340 to align # Constraint # added constraint: constraint((T0355)I57.CB, (T0355)P114.CB) [> 3.3356 = 5.5593 < 7.2270] w=0.4339 to align # Constraint # added constraint: constraint((T0355)M50.CB, (T0355)L108.CB) [> 3.8170 = 6.3616 < 8.2701] w=0.4339 to align # Constraint # added constraint: constraint((T0355)T187.CB, (T0355)I217.CB) [> 3.4285 = 5.7141 < 7.4284] w=0.4333 to align # Constraint # added constraint: constraint((T0355)G59.CA, (T0355)V271.CB) [> 3.6928 = 6.1547 < 8.0011] w=0.4295 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)E67.CB) [> 3.4106 = 5.6843 < 7.3896] w=0.4294 to align # Constraint # added constraint: constraint((T0355)T187.CB, (T0355)A220.CB) [> 3.4285 = 5.7141 < 7.4283] w=0.4285 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)A119.CB) [> 3.7048 = 6.1747 < 8.0272] w=0.4274 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)L64.CB) [> 4.0781 = 6.7969 < 8.8360] w=0.4228 to align # Constraint # added constraint: constraint((T0355)I57.CB, (T0355)P112.CB) [> 3.4505 = 5.7509 < 7.4762] w=0.4194 to align # Constraint # added constraint: constraint((T0355)G24.CA, (T0355)L56.CB) [> 3.8429 = 6.4049 < 8.3263] w=0.4163 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)R146.CB) [> 4.0324 = 6.7207 < 8.7369] w=0.4163 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)A119.CB) [> 3.0749 = 5.1249 < 6.6624] w=0.4143 to align # Constraint # added constraint: constraint((T0355)H62.CB, (T0355)A115.CB) [> 4.2939 = 7.1564 < 9.3034] w=0.4143 to align # Constraint # added constraint: constraint((T0355)I199.CB, (T0355)V227.CB) [> 4.1575 = 6.9292 < 9.0080] w=0.4136 to align # Constraint # added constraint: constraint((T0355)G255.CA, (T0355)R266.CB) [> 3.3535 = 5.5892 < 7.2660] w=0.4099 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)V66.CB) [> 4.1200 = 6.8666 < 8.9266] w=0.4082 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)I118.CB) [> 4.1602 = 6.9337 < 9.0138] w=0.4076 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)F116.CB) [> 4.1263 = 6.8771 < 8.9403] w=0.4062 to align # Constraint # added constraint: constraint((T0355)F116.CB, (T0355)G141.CA) [> 4.1331 = 6.8886 < 8.9551] w=0.4030 to align # Constraint # added constraint: constraint((T0355)G228.CA, (T0355)I239.CB) [> 4.5025 = 7.5042 < 9.7555] w=0.4017 to align # Constraint # added constraint: constraint((T0355)A209.CB, (T0355)S229.CB) [> 3.7132 = 6.1886 < 8.0451] w=0.4017 to align # Constraint # added constraint: constraint((T0355)A200.CB, (T0355)E213.CB) [> 3.7610 = 6.2683 < 8.1488] w=0.4007 to align # Constraint # added constraint: constraint((T0355)T187.CB, (T0355)V198.CB) [> 3.7908 = 6.3181 < 8.2135] w=0.4006 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)P112.CB) [> 3.3349 = 5.5582 < 7.2257] w=0.3996 to align # Constraint # added constraint: constraint((T0355)A21.CB, (T0355)S244.CB) [> 3.9719 = 6.6198 < 8.6057] w=0.3964 to align # Constraint # added constraint: constraint((T0355)S251.CB, (T0355)R266.CB) [> 3.9868 = 6.6447 < 8.6381] w=0.3954 to align # Constraint # added constraint: constraint((T0355)L252.CB, (T0355)R266.CB) [> 3.0776 = 5.1294 < 6.6682] w=0.3953 to align # Constraint # added constraint: constraint((T0355)E54.CB, (T0355)A111.CB) [> 3.6641 = 6.1068 < 7.9388] w=0.3952 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)A249.CB) [> 3.7573 = 6.2621 < 8.1407] w=0.3951 to align # Constraint # added constraint: constraint((T0355)V246.CB, (T0355)A274.CB) [> 4.0544 = 6.7574 < 8.7846] w=0.3899 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)L108.CB) [> 4.1346 = 6.8910 < 8.9582] w=0.3898 to align # Constraint # added constraint: constraint((T0355)A209.CB, (T0355)G230.CA) [> 3.5241 = 5.8734 < 7.6355] w=0.3885 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)L108.CB) [> 3.9395 = 6.5659 < 8.5357] w=0.3864 to align # Constraint # added constraint: constraint((T0355)A147.CB, (T0355)A166.CB) [> 3.7269 = 6.2116 < 8.0750] w=0.3819 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)V66.CB) [> 4.3554 = 7.2589 < 9.4366] w=0.3776 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)P112.CB) [> 3.8679 = 6.4464 < 8.3804] w=0.3753 to align # Constraint # added constraint: constraint((T0355)G206.CA, (T0355)G230.CA) [> 3.1041 = 5.1735 < 6.7255] w=0.3744 to align # Constraint # added constraint: constraint((T0355)M50.CB, (T0355)V107.CB) [> 3.5824 = 5.9706 < 7.7618] w=0.3702 to align # Constraint # added constraint: constraint((T0355)M61.CB, (T0355)V271.CB) [> 3.9766 = 6.6277 < 8.6160] w=0.3700 to align # Constraint # added constraint: constraint((T0355)G60.CA, (T0355)V267.CB) [> 3.3121 = 5.5202 < 7.1763] w=0.3687 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)I217.CB) [> 3.8962 = 6.4936 < 8.4417] w=0.3658 to align # Constraint # added constraint: constraint((T0355)A133.CB, (T0355)E160.CB) [> 3.4655 = 5.7758 < 7.5085] w=0.3635 to align # Constraint # added constraint: constraint((T0355)A147.CB, (T0355)L157.CB) [> 3.9176 = 6.5294 < 8.4882] w=0.3628 to align # Constraint # added constraint: constraint((T0355)V246.CB, (T0355)F270.CB) [> 4.2821 = 7.1368 < 9.2779] w=0.3623 to align # Constraint # added constraint: constraint((T0355)D52.CB, (T0355)K253.CB) [> 3.9716 = 6.6193 < 8.6051] w=0.3622 to align # Constraint # added constraint: constraint((T0355)A166.CB, (T0355)V198.CB) [> 3.3546 = 5.5910 < 7.2683] w=0.3610 to align # Constraint # added constraint: constraint((T0355)A109.CB, (T0355)F142.CB) [> 4.2189 = 7.0315 < 9.1410] w=0.3577 to align # Constraint # added constraint: constraint((T0355)M25.CB, (T0355)L252.CB) [> 3.7819 = 6.3032 < 8.1942] w=0.3570 to align # Constraint # added constraint: constraint((T0355)V129.CB, (T0355)A147.CB) [> 3.7091 = 6.1818 < 8.0364] w=0.3564 to align # Constraint # added constraint: constraint((T0355)I57.CB, (T0355)I113.CB) [> 3.7802 = 6.3004 < 8.1905] w=0.3556 to align # Constraint # added constraint: constraint((T0355)G218.CA, (T0355)T243.CB) [> 4.2312 = 7.0520 < 9.1676] w=0.3456 to align # Constraint # added constraint: constraint((T0355)R55.CB, (T0355)L264.CB) [> 2.9385 = 4.8975 < 6.3667] w=0.3439 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)E67.CB) [> 3.4497 = 5.7495 < 7.4743] w=0.3438 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)V66.CB) [> 3.8758 = 6.4596 < 8.3975] w=0.3437 to align # Constraint # added constraint: constraint((T0355)A21.CB, (T0355)H62.CB) [> 2.8907 = 4.8179 < 6.2633] w=0.3437 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)V137.CB) [> 4.0603 = 6.7671 < 8.7973] w=0.3425 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)A200.CB) [> 3.6573 = 6.0955 < 7.9242] w=0.3402 to align # Constraint # added constraint: constraint((T0355)G202.CA, (T0355)G228.CA) [> 4.0344 = 6.7240 < 8.7413] w=0.3402 to align # Constraint # added constraint: constraint((T0355)K120.CB, (T0355)A147.CB) [> 3.5268 = 5.8779 < 7.6413] w=0.3373 to align # Constraint # added constraint: constraint((T0355)K120.CB, (T0355)G145.CA) [> 4.0491 = 6.7485 < 8.7731] w=0.3373 to align # Constraint # added constraint: constraint((T0355)A133.CB, (T0355)L157.CB) [> 3.6405 = 6.0675 < 7.8877] w=0.3366 to align # Constraint # added constraint: constraint((T0355)V170.CB, (T0355)L186.CB) [> 3.1834 = 5.3056 < 6.8973] w=0.3364 to align # Constraint # added constraint: constraint((T0355)G24.CA, (T0355)A249.CB) [> 3.9062 = 6.5104 < 8.4635] w=0.3358 to align # Constraint # added constraint: constraint((T0355)A133.CB, (T0355)G145.CA) [> 4.2676 = 7.1127 < 9.2465] w=0.3358 to align # Constraint # added constraint: constraint((T0355)A166.CB, (T0355)I199.CB) [> 4.1185 = 6.8642 < 8.9235] w=0.3337 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)A195.CB) [> 3.7322 = 6.2203 < 8.0864] w=0.3282 to align # Constraint # added constraint: constraint((T0355)V164.CB, (T0355)A195.CB) [> 3.3280 = 5.5467 < 7.2107] w=0.3271 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)A111.CB) [> 3.7132 = 6.1886 < 8.0451] w=0.3227 to align # Constraint # added constraint: constraint((T0355)A147.CB, (T0355)V164.CB) [> 3.9098 = 6.5164 < 8.4713] w=0.3223 to align # Constraint # added constraint: constraint((T0355)T205.CB, (T0355)G230.CA) [> 3.5270 = 5.8784 < 7.6419] w=0.3216 to align # Constraint # added constraint: constraint((T0355)V164.CB, (T0355)G197.CA) [> 4.3007 = 7.1679 < 9.3183] w=0.3212 to align # Constraint # added constraint: constraint((T0355)F165.CB, (T0355)G197.CA) [> 3.3298 = 5.5496 < 7.2145] w=0.3157 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)G197.CA) [> 3.6502 = 6.0837 < 7.9088] w=0.3151 to align # Constraint # added constraint: constraint((T0355)D167.CB, (T0355)I199.CB) [> 3.0426 = 5.0710 < 6.5922] w=0.3150 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)I183.CB) [> 3.4433 = 5.7388 < 7.4604] w=0.3101 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)V101.CB) [> 2.9387 = 4.8978 < 6.3671] w=0.3092 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)V101.CB) [> 3.4702 = 5.7836 < 7.5187] w=0.3092 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)V103.CB) [> 3.3206 = 5.5344 < 7.1947] w=0.3091 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)P102.CB) [> 4.3360 = 7.2267 < 9.3947] w=0.3091 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)P102.CB) [> 2.9056 = 4.8428 < 6.2956] w=0.3091 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)I199.CB) [> 4.1900 = 6.9834 < 9.0784] w=0.3084 to align # Constraint # added constraint: constraint((T0355)A121.CB, (T0355)A148.CB) [> 3.7103 = 6.1838 < 8.0389] w=0.3045 to align # Constraint # added constraint: constraint((T0355)K120.CB, (T0355)A148.CB) [> 3.9487 = 6.5812 < 8.5555] w=0.3044 to align # Constraint # added constraint: constraint((T0355)G122.CA, (T0355)A147.CB) [> 3.7021 = 6.1701 < 8.0211] w=0.3043 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)V66.CB) [> 3.9021 = 6.5034 < 8.4545] w=0.3042 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)L226.CB) [> 4.0407 = 6.7345 < 8.7548] w=0.3042 to align # Constraint # added constraint: constraint((T0355)H62.CB, (T0355)G245.CA) [> 4.4832 = 7.4719 < 9.7135] w=0.3030 to align # Constraint # added constraint: constraint((T0355)A166.CB, (T0355)A195.CB) [> 2.8930 = 4.8216 < 6.2681] w=0.3028 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)G104.CA) [> 3.2640 = 5.4401 < 7.0721] w=0.3025 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)A124.CB) [> 2.8634 = 4.7723 < 6.2040] w=0.3025 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)V198.CB) [> 3.7413 = 6.2355 < 8.1062] w=0.3019 to align # Constraint # added constraint: constraint((T0355)M25.CB, (T0355)E67.CB) [> 3.8408 = 6.4013 < 8.3217] w=0.2977 to align # Constraint # added constraint: constraint((T0355)I15.CB, (T0355)H62.CB) [> 3.5695 = 5.9491 < 7.7339] w=0.2976 to align # Constraint # added constraint: constraint((T0355)G145.CA, (T0355)V164.CB) [> 3.6849 = 6.1415 < 7.9839] w=0.2969 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)V91.CB) [> 3.6992 = 6.1653 < 8.0148] w=0.2964 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)T221.CB) [> 3.7720 = 6.2867 < 8.1727] w=0.2961 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)V103.CB) [> 3.8370 = 6.3951 < 8.3136] w=0.2960 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)G104.CA) [> 3.9953 = 6.6589 < 8.6566] w=0.2959 to align # Constraint # added constraint: constraint((T0355)V170.CB, (T0355)A195.CB) [> 3.3245 = 5.5408 < 7.2031] w=0.2904 to align # Constraint # added constraint: constraint((T0355)G145.CA, (T0355)F165.CB) [> 3.4812 = 5.8019 < 7.5425] w=0.2904 to align # Constraint # added constraint: constraint((T0355)V103.CB, (T0355)K125.CB) [> 3.3951 = 5.6585 < 7.3560] w=0.2904 to align # Constraint # added constraint: constraint((T0355)M25.CB, (T0355)M61.CB) [> 2.8437 = 4.7395 < 6.1613] w=0.2898 to align # Constraint # added constraint: constraint((T0355)M25.CB, (T0355)G63.CA) [> 3.9490 = 6.5816 < 8.5561] w=0.2898 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)I105.CB) [> 3.8714 = 6.4523 < 8.3879] w=0.2892 to align # Constraint # added constraint: constraint((T0355)I183.CB, (T0355)E213.CB) [> 4.0638 = 6.7730 < 8.8049] w=0.2839 to align # Constraint # added constraint: constraint((T0355)I183.CB, (T0355)A220.CB) [> 3.9591 = 6.5985 < 8.5780] w=0.2838 to align # Constraint # added constraint: constraint((T0355)R146.CB, (T0355)F165.CB) [> 2.7037 = 4.5061 < 5.8579] w=0.2838 to align # Constraint # added constraint: constraint((T0355)V129.CB, (T0355)A150.CB) [> 3.8096 = 6.3493 < 8.2542] w=0.2838 to align # Constraint # added constraint: constraint((T0355)P102.CB, (T0355)K125.CB) [> 2.8087 = 4.6812 < 6.0855] w=0.2838 to align # Constraint # added constraint: constraint((T0355)V237.CB, (T0355)A274.CB) [> 4.0859 = 6.8098 < 8.8527] w=0.2831 to align # Constraint # added constraint: constraint((T0355)H62.CB, (T0355)V101.CB) [> 3.9633 = 6.6055 < 8.5872] w=0.2828 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)A53.CB) [> 3.8650 = 6.4416 < 8.3741] w=0.2779 to align # Constraint # added constraint: constraint((T0355)G24.CA, (T0355)L252.CB) [> 3.6362 = 6.0603 < 7.8784] w=0.2779 to align # Constraint # added constraint: constraint((T0355)G145.CA, (T0355)S168.CB) [> 3.6179 = 6.0299 < 7.8388] w=0.2772 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)K253.CB) [> 4.1426 = 6.9043 < 8.9757] w=0.2772 to align # Constraint # added constraint: constraint((T0355)N130.CB, (T0355)L156.CB) [> 3.5437 = 5.9062 < 7.6780] w=0.2772 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)F126.CB) [> 4.1215 = 6.8691 < 8.9299] w=0.2772 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)I127.CB) [> 3.2902 = 5.4836 < 7.1287] w=0.2772 to align # Constraint # added constraint: constraint((T0355)A138.CB, (T0355)E160.CB) [> 3.2400 = 5.4000 < 7.0199] w=0.2772 to align # Constraint # added constraint: constraint((T0355)M25.CB, (T0355)L56.CB) [> 2.9209 = 4.8682 < 6.3287] w=0.2767 to align # Constraint # added constraint: constraint((T0355)A200.CB, (T0355)T243.CB) [> 4.5037 = 7.5061 < 9.7580] w=0.2766 to align # Constraint # added constraint: constraint((T0355)I57.CB, (T0355)V101.CB) [> 3.4111 = 5.6851 < 7.3906] w=0.2763 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)T92.CB) [> 3.8342 = 6.3903 < 8.3074] w=0.2762 to align # Constraint # added constraint: constraint((T0355)A166.CB, (T0355)L186.CB) [> 4.0050 = 6.6750 < 8.6775] w=0.2762 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)D52.CB) [> 3.4640 = 5.7734 < 7.5054] w=0.2713 to align # Constraint # added constraint: constraint((T0355)V237.CB, (T0355)G277.CA) [> 3.4869 = 5.8116 < 7.5551] w=0.2712 to align # Constraint # added constraint: constraint((T0355)A148.CB, (T0355)D167.CB) [> 2.9552 = 4.9253 < 6.4029] w=0.2707 to align # Constraint # added constraint: constraint((T0355)G104.CA, (T0355)F126.CB) [> 2.6143 = 4.3572 < 5.6643] w=0.2706 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)R128.CB) [> 4.0670 = 6.7783 < 8.8118] w=0.2706 to align # Constraint # added constraint: constraint((T0355)G24.CA, (T0355)G245.CA) [> 4.2419 = 7.0699 < 9.1908] w=0.2701 to align # Constraint # added constraint: constraint((T0355)G24.CA, (T0355)V246.CB) [> 3.9951 = 6.6584 < 8.6560] w=0.2701 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)V248.CB) [> 3.8408 = 6.4014 < 8.3218] w=0.2701 to align # Constraint # added constraint: constraint((T0355)A166.CB, (T0355)F193.CB) [> 3.7331 = 6.2219 < 8.0884] w=0.2700 to align # Constraint # added constraint: constraint((T0355)G59.CA, (T0355)L264.CB) [> 3.1312 = 5.2187 < 6.7844] w=0.2700 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)I65.CB) [> 3.9473 = 6.5789 < 8.5525] w=0.2700 to align # Constraint # added constraint: constraint((T0355)T205.CB, (T0355)S229.CB) [> 3.7131 = 6.1885 < 8.0451] w=0.2700 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)I118.CB) [> 4.1983 = 6.9972 < 9.0964] w=0.2692 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)I95.CB) [> 3.8452 = 6.4086 < 8.3312] w=0.2689 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)L108.CB) [> 3.7503 = 6.2504 < 8.1256] w=0.2679 to align # Constraint # added constraint: constraint((T0355)A119.CB, (T0355)A148.CB) [> 4.0290 = 6.7150 < 8.7295] w=0.2649 to align # Constraint # added constraint: constraint((T0355)A121.CB, (T0355)A147.CB) [> 4.0340 = 6.7234 < 8.7404] w=0.2648 to align # Constraint # added constraint: constraint((T0355)A21.CB, (T0355)G63.CA) [> 4.3099 = 7.1832 < 9.3382] w=0.2647 to align # Constraint # added constraint: constraint((T0355)A195.CB, (T0355)G228.CA) [> 3.8848 = 6.4747 < 8.4171] w=0.2643 to align # Constraint # added constraint: constraint((T0355)G145.CA, (T0355)H169.CB) [> 3.5625 = 5.9375 < 7.7188] w=0.2640 to align # Constraint # added constraint: constraint((T0355)E144.CB, (T0355)H169.CB) [> 3.3174 = 5.5289 < 7.1876] w=0.2640 to align # Constraint # added constraint: constraint((T0355)E144.CB, (T0355)S168.CB) [> 4.0145 = 6.6908 < 8.6981] w=0.2640 to align # Constraint # added constraint: constraint((T0355)L22.CB, (T0355)V271.CB) [> 3.8733 = 6.4554 < 8.3920] w=0.2640 to align # Constraint # added constraint: constraint((T0355)N207.CB, (T0355)S229.CB) [> 3.9281 = 6.5469 < 8.5110] w=0.2636 to align # Constraint # added constraint: constraint((T0355)L252.CB, (T0355)E263.CB) [> 3.4886 = 5.8143 < 7.5586] w=0.2635 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)I247.CB) [> 3.6716 = 6.1194 < 7.9552] w=0.2635 to align # Constraint # added constraint: constraint((T0355)A147.CB, (T0355)D167.CB) [> 3.8966 = 6.4943 < 8.4426] w=0.2634 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)I95.CB) [> 3.2843 = 5.4738 < 7.1160] w=0.2631 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)L190.CB) [> 3.6971 = 6.1619 < 8.0105] w=0.2631 to align # Constraint # added constraint: constraint((T0355)A191.CB, (T0355)T221.CB) [> 3.4290 = 5.7150 < 7.4295] w=0.2624 to align # Constraint # added constraint: constraint((T0355)H172.CB, (T0355)I183.CB) [> 3.7981 = 6.3301 < 8.2292] w=0.2581 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)C49.CB) [> 3.6883 = 6.1471 < 7.9912] w=0.2580 to align # Constraint # added constraint: constraint((T0355)P102.CB, (T0355)F126.CB) [> 4.1075 = 6.8457 < 8.8995] w=0.2575 to align # Constraint # added constraint: constraint((T0355)E144.CB, (T0355)V164.CB) [> 4.1867 = 6.9779 < 9.0712] w=0.2574 to align # Constraint # added constraint: constraint((T0355)I183.CB, (T0355)E216.CB) [> 3.7825 = 6.3042 < 8.1954] w=0.2573 to align # Constraint # added constraint: constraint((T0355)T201.CB, (T0355)V227.CB) [> 4.1343 = 6.8905 < 8.9576] w=0.2537 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)C49.CB) [> 3.1770 = 5.2950 < 6.8836] w=0.2517 to align # Constraint # added constraint: constraint((T0355)G145.CA, (T0355)I162.CB) [> 3.6889 = 6.1481 < 7.9925] w=0.2510 to align # Constraint # added constraint: constraint((T0355)G104.CA, (T0355)I127.CB) [> 4.0677 = 6.7795 < 8.8133] w=0.2509 to align # Constraint # added constraint: constraint((T0355)E233.CB, (T0355)S251.CB) [> 4.0832 = 6.8053 < 8.8469] w=0.2504 to align # Constraint # added constraint: constraint((T0355)A147.CB, (T0355)F165.CB) [> 4.1327 = 6.8878 < 8.9541] w=0.2502 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)A195.CB) [> 3.8805 = 6.4676 < 8.4079] w=0.2498 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)K120.CB) [> 3.9313 = 6.5522 < 8.5179] w=0.2482 to align # Constraint # added constraint: constraint((T0355)G122.CA, (T0355)A148.CB) [> 3.9538 = 6.5897 < 8.5666] w=0.2451 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)K253.CB) [> 4.1705 = 6.9508 < 9.0360] w=0.2444 to align # Constraint # added constraint: constraint((T0355)F192.CB, (T0355)P224.CB) [> 3.0928 = 5.1546 < 6.7010] w=0.2438 to align # Constraint # added constraint: constraint((T0355)K120.CB, (T0355)W132.CB) [> 3.2997 = 5.4995 < 7.1494] w=0.2437 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)A99.CB) [> 3.9400 = 6.5668 < 8.5368] w=0.2437 to align # Constraint # added constraint: constraint((T0355)V129.CB, (T0355)V164.CB) [> 3.7793 = 6.2989 < 8.1885] w=0.2436 to align # Constraint # added constraint: constraint((T0355)D167.CB, (T0355)T201.CB) [> 3.4901 = 5.8168 < 7.5618] w=0.2415 to align # Constraint # added constraint: constraint((T0355)L22.CB, (T0355)G60.CA) [> 4.2459 = 7.0764 < 9.1994] w=0.2383 to align # Constraint # added constraint: constraint((T0355)R154.CB, (T0355)V164.CB) [> 3.0968 = 5.1613 < 6.7097] w=0.2379 to align # Constraint # added constraint: constraint((T0355)G145.CA, (T0355)L157.CB) [> 4.1550 = 6.9250 < 9.0024] w=0.2378 to align # Constraint # added constraint: constraint((T0355)A133.CB, (T0355)L156.CB) [> 3.3123 = 5.5205 < 7.1766] w=0.2378 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)A119.CB) [> 3.0311 = 5.0519 < 6.5674] w=0.2377 to align # Constraint # added constraint: constraint((T0355)A133.CB, (T0355)V164.CB) [> 3.6966 = 6.1610 < 8.0092] w=0.2377 to align # Constraint # added constraint: constraint((T0355)Q13.CB, (T0355)P224.CB) [> 3.9135 = 6.5224 < 8.4791] w=0.2376 to align # Constraint # added constraint: constraint((T0355)R146.CB, (T0355)I199.CB) [> 3.8718 = 6.4530 < 8.3889] w=0.2371 to align # Constraint # added constraint: constraint((T0355)V170.CB, (T0355)V198.CB) [> 3.6609 = 6.1014 < 7.9318] w=0.2370 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)D196.CB) [> 3.9102 = 6.5169 < 8.4720] w=0.2360 to align # Constraint # added constraint: constraint((T0355)Y37.CB, (T0355)I65.CB) [> 3.7693 = 6.2821 < 8.1667] w=0.2313 to align # Constraint # added constraint: constraint((T0355)F193.CB, (T0355)L226.CB) [> 3.8456 = 6.4093 < 8.3321] w=0.2312 to align # Constraint # added constraint: constraint((T0355)F193.CB, (T0355)L225.CB) [> 3.5045 = 5.8409 < 7.5932] w=0.2312 to align # Constraint # added constraint: constraint((T0355)G228.CA, (T0355)A249.CB) [> 4.3672 = 7.2787 < 9.4623] w=0.2308 to align # Constraint # added constraint: constraint((T0355)S41.CB, (T0355)D52.CB) [> 3.6249 = 6.0414 < 7.8538] w=0.2306 to align # Constraint # added constraint: constraint((T0355)E58.CB, (T0355)L264.CB) [> 3.7223 = 6.2038 < 8.0649] w=0.2306 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)L64.CB) [> 4.2200 = 7.0333 < 9.1433] w=0.2305 to align # Constraint # added constraint: constraint((T0355)K120.CB, (T0355)V137.CB) [> 4.1674 = 6.9456 < 9.0293] w=0.2305 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)T201.CB) [> 3.4885 = 5.8142 < 7.5584] w=0.2305 to align # Constraint # added constraint: constraint((T0355)L211.CB, (T0355)K241.CB) [> 4.2234 = 7.0390 < 9.1507] w=0.2304 to align # Constraint # added constraint: constraint((T0355)A147.CB, (T0355)K171.CB) [> 4.0792 = 6.7987 < 8.8383] w=0.2304 to align # Constraint # added constraint: constraint((T0355)V129.CB, (T0355)F165.CB) [> 4.1254 = 6.8756 < 8.9383] w=0.2304 to align # Constraint # added constraint: constraint((T0355)S229.CB, (T0355)A249.CB) [> 4.2981 = 7.1635 < 9.3125] w=0.2296 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)T201.CB) [> 4.1551 = 6.9251 < 9.0027] w=0.2294 to align # Constraint # added constraint: constraint((T0355)V164.CB, (T0355)D196.CB) [> 3.5614 = 5.9356 < 7.7163] w=0.2294 to align # Constraint # added constraint: constraint((T0355)Q203.CB, (T0355)S229.CB) [> 3.4959 = 5.8265 < 7.5744] w=0.2285 to align # Constraint # added constraint: constraint((T0355)Y37.CB, (T0355)L64.CB) [> 4.1436 = 6.9060 < 8.9778] w=0.2248 to align # Constraint # added constraint: constraint((T0355)F193.CB, (T0355)P224.CB) [> 4.0604 = 6.7674 < 8.7976] w=0.2246 to align # Constraint # added constraint: constraint((T0355)I177.CB, (T0355)I217.CB) [> 3.6067 = 6.0111 < 7.8144] w=0.2246 to align # Constraint # added constraint: constraint((T0355)V96.CB, (T0355)G122.CA) [> 3.6949 = 6.1581 < 8.0056] w=0.2245 to align # Constraint # added constraint: constraint((T0355)F192.CB, (T0355)L225.CB) [> 4.3162 = 7.1936 < 9.3517] w=0.2241 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)D52.CB) [> 3.4829 = 5.8049 < 7.5463] w=0.2241 to align # Constraint # added constraint: constraint((T0355)S41.CB, (T0355)R51.CB) [> 3.3403 = 5.5672 < 7.2373] w=0.2240 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)I105.CB) [> 4.5080 = 7.5134 < 9.7674] w=0.2235 to align # Constraint # added constraint: constraint((T0355)T92.CB, (T0355)I105.CB) [> 3.7838 = 6.3063 < 8.1981] w=0.2228 to align # Constraint # added constraint: constraint((T0355)V164.CB, (T0355)L190.CB) [> 3.2019 = 5.3365 < 6.9374] w=0.2228 to align # Constraint # added constraint: constraint((T0355)E144.CB, (T0355)A166.CB) [> 3.7354 = 6.2256 < 8.0933] w=0.2180 to align # Constraint # added constraint: constraint((T0355)I127.CB, (T0355)I162.CB) [> 3.5324 = 5.8874 < 7.6536] w=0.2180 to align # Constraint # added constraint: constraint((T0355)L211.CB, (T0355)V227.CB) [> 4.3932 = 7.3219 < 9.5185] w=0.2176 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)I80.CB) [> 3.5327 = 5.8878 < 7.6542] w=0.2174 to align # Constraint # added constraint: constraint((T0355)L240.CB, (T0355)G277.CA) [> 3.5174 = 5.8623 < 7.6211] w=0.2173 to align # Constraint # added constraint: constraint((T0355)G122.CA, (T0355)W132.CB) [> 3.5619 = 5.9364 < 7.7174] w=0.2173 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)I105.CB) [> 4.2592 = 7.0987 < 9.2283] w=0.2170 to align # Constraint # added constraint: constraint((T0355)A209.CB, (T0355)V231.CB) [> 3.9046 = 6.5076 < 8.4599] w=0.2163 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)C49.CB) [> 3.9940 = 6.6566 < 8.6536] w=0.2121 to align # Constraint # added constraint: constraint((T0355)I12.CB, (T0355)P224.CB) [> 3.4330 = 5.7217 < 7.4381] w=0.2120 to align # Constraint # added constraint: constraint((T0355)E212.CB, (T0355)R242.CB) [> 4.3563 = 7.2606 < 9.4387] w=0.2120 to align # Constraint # added constraint: constraint((T0355)T92.CB, (T0355)A124.CB) [> 3.5588 = 5.9313 < 7.7107] w=0.2114 to align # Constraint # added constraint: constraint((T0355)F126.CB, (T0355)I162.CB) [> 3.8719 = 6.4531 < 8.3890] w=0.2114 to align # Constraint # added constraint: constraint((T0355)R146.CB, (T0355)H169.CB) [> 2.6571 = 4.4284 < 5.7570] w=0.2113 to align # Constraint # added constraint: constraint((T0355)G122.CA, (T0355)A150.CB) [> 3.9353 = 6.5588 < 8.5264] w=0.2111 to align # Constraint # added constraint: constraint((T0355)Y46.CB, (T0355)G104.CA) [> 3.7015 = 6.1691 < 8.0198] w=0.2111 to align # Constraint # added constraint: constraint((T0355)A40.CB, (T0355)D52.CB) [> 3.2887 = 5.4812 < 7.1256] w=0.2109 to align # Constraint # added constraint: constraint((T0355)F126.CB, (T0355)K163.CB) [> 2.8075 = 4.6792 < 6.0830] w=0.2107 to align # Constraint # added constraint: constraint((T0355)H172.CB, (T0355)I199.CB) [> 4.0263 = 6.7105 < 8.7237] w=0.2107 to align # Constraint # added constraint: constraint((T0355)R158.CB, (T0355)D189.CB) [> 3.4713 = 5.7855 < 7.5211] w=0.2105 to align # Constraint # added constraint: constraint((T0355)D167.CB, (T0355)V198.CB) [> 4.3022 = 7.1703 < 9.3214] w=0.2097 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)A119.CB) [> 4.0315 = 6.7192 < 8.7349] w=0.2086 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)I118.CB) [> 3.7790 = 6.2983 < 8.1878] w=0.2085 to align # Constraint # added constraint: constraint((T0355)A40.CB, (T0355)C49.CB) [> 3.7912 = 6.3187 < 8.2143] w=0.2056 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)V91.CB) [> 3.8109 = 6.3515 < 8.2569] w=0.2050 to align # Constraint # added constraint: constraint((T0355)G145.CA, (T0355)H161.CB) [> 4.0960 = 6.8267 < 8.8747] w=0.2048 to align # Constraint # added constraint: constraint((T0355)H172.CB, (T0355)L186.CB) [> 3.1944 = 5.3240 < 6.9212] w=0.2047 to align # Constraint # added constraint: constraint((T0355)A195.CB, (T0355)L225.CB) [> 3.9551 = 6.5918 < 8.5693] w=0.2042 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)T98.CB) [> 3.6852 = 6.1420 < 7.9845] w=0.2042 to align # Constraint # added constraint: constraint((T0355)V170.CB, (T0355)E213.CB) [> 3.9339 = 6.5564 < 8.5234] w=0.2041 to align # Constraint # added constraint: constraint((T0355)L240.CB, (T0355)L278.CB) [> 3.6302 = 6.0503 < 7.8653] w=0.2041 to align # Constraint # added constraint: constraint((T0355)S210.CB, (T0355)G230.CA) [> 4.3541 = 7.2568 < 9.4338] w=0.2041 to align # Constraint # added constraint: constraint((T0355)A200.CB, (T0355)S229.CB) [> 3.8173 = 6.3622 < 8.2709] w=0.2033 to align # Constraint # added constraint: constraint((T0355)M50.CB, (T0355)T98.CB) [> 3.2585 = 5.4309 < 7.0601] w=0.2031 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)V198.CB) [> 3.9451 = 6.5753 < 8.5478] w=0.2030 to align # Constraint # added constraint: constraint((T0355)R158.CB, (T0355)F193.CB) [> 3.3114 = 5.5191 < 7.1748] w=0.2030 to align # Constraint # added constraint: constraint((T0355)V170.CB, (T0355)I199.CB) [> 4.0128 = 6.6880 < 8.6945] w=0.2030 to align # Constraint # added constraint: constraint((T0355)G202.CA, (T0355)E213.CB) [> 3.5175 = 5.8625 < 7.6212] w=0.2029 to align # Constraint # added constraint: constraint((T0355)Y37.CB, (T0355)C49.CB) [> 3.8744 = 6.4573 < 8.3945] w=0.1984 to align # Constraint # added constraint: constraint((T0355)H172.CB, (T0355)S182.CB) [> 3.6242 = 6.0403 < 7.8524] w=0.1982 to align # Constraint # added constraint: constraint((T0355)K20.CB, (T0355)G245.CA) [> 3.3776 = 5.6293 < 7.3180] w=0.1982 to align # Constraint # added constraint: constraint((T0355)I127.CB, (T0355)F165.CB) [> 4.1493 = 6.9155 < 8.9902] w=0.1976 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)A200.CB) [> 4.1878 = 6.9797 < 9.0736] w=0.1976 to align # Constraint # added constraint: constraint((T0355)H172.CB, (T0355)V198.CB) [> 3.6728 = 6.1213 < 7.9577] w=0.1975 to align # Constraint # added constraint: constraint((T0355)D180.CB, (T0355)E216.CB) [> 3.5513 = 5.9188 < 7.6945] w=0.1973 to align # Constraint # added constraint: constraint((T0355)H172.CB, (T0355)A200.CB) [> 3.7803 = 6.3005 < 8.1907] w=0.1963 to align # Constraint # added constraint: constraint((T0355)R36.CB, (T0355)V248.CB) [> 3.9613 = 6.6021 < 8.5827] w=0.1911 to align # Constraint # added constraint: constraint((T0355)V227.CB, (T0355)L240.CB) [> 4.5806 = 7.6343 < 9.9246] w=0.1911 to align # Constraint # added constraint: constraint((T0355)G245.CA, (T0355)A274.CB) [> 4.0791 = 6.7985 < 8.8381] w=0.1911 to align # Constraint # added constraint: constraint((T0355)V129.CB, (T0355)A166.CB) [> 3.4527 = 5.7545 < 7.4808] w=0.1909 to align # Constraint # added constraint: constraint((T0355)K120.CB, (T0355)L157.CB) [> 2.9834 = 4.9723 < 6.4640] w=0.1886 to align # Constraint # added constraint: constraint((T0355)A121.CB, (T0355)E149.CB) [> 3.4062 = 5.6771 < 7.3802] w=0.1857 to align # Constraint # added constraint: constraint((T0355)Y37.CB, (T0355)D52.CB) [> 3.8871 = 6.4785 < 8.4220] w=0.1853 to align # Constraint # added constraint: constraint((T0355)Y37.CB, (T0355)K253.CB) [> 3.3034 = 5.5057 < 7.1574] w=0.1851 to align # Constraint # added constraint: constraint((T0355)E144.CB, (T0355)D189.CB) [> 3.4854 = 5.8089 < 7.5516] w=0.1847 to align # Constraint # added constraint: constraint((T0355)S85.CB, (T0355)I105.CB) [> 3.9490 = 6.5817 < 8.5562] w=0.1845 to align # Constraint # added constraint: constraint((T0355)M25.CB, (T0355)V66.CB) [> 4.1811 = 6.9685 < 9.0591] w=0.1843 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)I199.CB) [> 3.3222 = 5.5371 < 7.1982] w=0.1843 to align # Constraint # added constraint: constraint((T0355)A133.CB, (T0355)H161.CB) [> 3.4429 = 5.7381 < 7.4595] w=0.1841 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)K120.CB) [> 3.0611 = 5.1019 < 6.6324] w=0.1822 to align # Constraint # added constraint: constraint((T0355)F74.CB, (T0355)A121.CB) [> 3.0316 = 5.0527 < 6.5686] w=0.1793 to align # Constraint # added constraint: constraint((T0355)Y37.CB, (T0355)E67.CB) [> 4.1973 = 6.9955 < 9.0941] w=0.1787 to align # Constraint # added constraint: constraint((T0355)R36.CB, (T0355)K253.CB) [> 4.1599 = 6.9332 < 9.0131] w=0.1786 to align # Constraint # added constraint: constraint((T0355)R154.CB, (T0355)V170.CB) [> 4.1956 = 6.9926 < 9.0904] w=0.1786 to align # Constraint # added constraint: constraint((T0355)I12.CB, (T0355)S244.CB) [> 3.4525 = 5.7542 < 7.4805] w=0.1786 to align # Constraint # added constraint: constraint((T0355)L157.CB, (T0355)S168.CB) [> 4.0131 = 6.6884 < 8.6949] w=0.1785 to align # Constraint # added constraint: constraint((T0355)A174.CB, (T0355)I217.CB) [> 3.8973 = 6.4955 < 8.4441] w=0.1778 to align # Constraint # added constraint: constraint((T0355)A40.CB, (T0355)K253.CB) [> 3.6799 = 6.1331 < 7.9731] w=0.1777 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)G202.CA) [> 3.9621 = 6.6035 < 8.5845] w=0.1776 to align # Constraint # added constraint: constraint((T0355)L190.CB, (T0355)T221.CB) [> 4.0811 = 6.8018 < 8.8423] w=0.1776 to align # Constraint # added constraint: constraint((T0355)K171.CB, (T0355)T201.CB) [> 3.5304 = 5.8840 < 7.6492] w=0.1767 to align # Constraint # added constraint: constraint((T0355)G202.CA, (T0355)I214.CB) [> 3.5553 = 5.9255 < 7.7031] w=0.1757 to align # Constraint # added constraint: constraint((T0355)N235.CB, (T0355)V246.CB) [> 4.3124 = 7.1874 < 9.3436] w=0.1733 to align # Constraint # added constraint: constraint((T0355)G123.CA, (T0355)E149.CB) [> 4.3852 = 7.3086 < 9.5012] w=0.1727 to align # Constraint # added constraint: constraint((T0355)D194.CB, (T0355)L225.CB) [> 3.7288 = 6.2146 < 8.0790] w=0.1726 to align # Constraint # added constraint: constraint((T0355)R36.CB, (T0355)I247.CB) [> 3.6079 = 6.0131 < 7.8170] w=0.1720 to align # Constraint # added constraint: constraint((T0355)R38.CB, (T0355)C49.CB) [> 4.1457 = 6.9095 < 8.9824] w=0.1719 to align # Constraint # added constraint: constraint((T0355)T92.CB, (T0355)G123.CA) [> 3.6387 = 6.0645 < 7.8839] w=0.1719 to align # Constraint # added constraint: constraint((T0355)V96.CB, (T0355)A124.CB) [> 4.2179 = 7.0298 < 9.1388] w=0.1718 to align # Constraint # added constraint: constraint((T0355)M50.CB, (T0355)V91.CB) [> 3.7003 = 6.1672 < 8.0173] w=0.1718 to align # Constraint # added constraint: constraint((T0355)A9.CB, (T0355)P224.CB) [> 3.7638 = 6.2729 < 8.1548] w=0.1712 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)L226.CB) [> 4.1043 = 6.8405 < 8.8927] w=0.1711 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)E213.CB) [> 4.1744 = 6.9573 < 9.0445] w=0.1709 to align # Constraint # added constraint: constraint((T0355)A174.CB, (T0355)E213.CB) [> 3.6251 = 6.0419 < 7.8545] w=0.1703 to align # Constraint # added constraint: constraint((T0355)L22.CB, (T0355)I236.CB) [> 4.2926 = 7.1543 < 9.3005] w=0.1659 to align # Constraint # added constraint: constraint((T0355)A117.CB, (T0355)H169.CB) [> 4.0468 = 6.7447 < 8.7681] w=0.1652 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)A53.CB) [> 3.8734 = 6.4557 < 8.3924] w=0.1647 to align # Constraint # added constraint: constraint((T0355)M151.CB, (T0355)D194.CB) [> 3.8313 = 6.3855 < 8.3011] w=0.1647 to align # Constraint # added constraint: constraint((T0355)P102.CB, (T0355)V137.CB) [> 4.2294 = 7.0490 < 9.1637] w=0.1646 to align # Constraint # added constraint: constraint((T0355)M151.CB, (T0355)A195.CB) [> 4.0512 = 6.7520 < 8.7776] w=0.1646 to align # Constraint # added constraint: constraint((T0355)M42.CB, (T0355)R94.CB) [> 3.8176 = 6.3626 < 8.2715] w=0.1643 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)M88.CB) [> 3.9611 = 6.6019 < 8.5824] w=0.1637 to align # Constraint # added constraint: constraint((T0355)I236.CB, (T0355)G277.CA) [> 3.4103 = 5.6838 < 7.3890] w=0.1593 to align # Constraint # added constraint: constraint((T0355)Y46.CB, (T0355)R94.CB) [> 3.5679 = 5.9465 < 7.7305] w=0.1585 to align # Constraint # added constraint: constraint((T0355)G70.CA, (T0355)D79.CB) [> 4.0074 = 6.6790 < 8.6826] w=0.1582 to align # Constraint # added constraint: constraint((T0355)M151.CB, (T0355)A166.CB) [> 3.9897 = 6.6495 < 8.6444] w=0.1581 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)A249.CB) [> 3.6127 = 6.0212 < 7.8276] w=0.1580 to align # Constraint # added constraint: constraint((T0355)F116.CB, (T0355)R154.CB) [> 3.4970 = 5.8284 < 7.5769] w=0.1577 to align # Constraint # added constraint: constraint((T0355)V137.CB, (T0355)A166.CB) [> 3.9568 = 6.5947 < 8.5732] w=0.1576 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)F87.CB) [> 3.9157 = 6.5261 < 8.4840] w=0.1561 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)M88.CB) [> 4.1315 = 6.8859 < 8.9516] w=0.1525 to align # Constraint # added constraint: constraint((T0355)Y37.CB, (T0355)V66.CB) [> 3.6684 = 6.1139 < 7.9481] w=0.1523 to align # Constraint # added constraint: constraint((T0355)A34.CB, (T0355)G63.CA) [> 3.4507 = 5.7512 < 7.4766] w=0.1523 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)A117.CB) [> 4.1598 = 6.9330 < 9.0129] w=0.1521 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)G60.CA) [> 4.2428 = 7.0713 < 9.1927] w=0.1516 to align # Constraint # added constraint: constraint((T0355)M151.CB, (T0355)V164.CB) [> 3.4544 = 5.7574 < 7.4846] w=0.1515 to align # Constraint # added constraint: constraint((T0355)V170.CB, (T0355)E185.CB) [> 3.3547 = 5.5911 < 7.2684] w=0.1514 to align # Constraint # added constraint: constraint((T0355)A115.CB, (T0355)F142.CB) [> 3.6197 = 6.0329 < 7.8428] w=0.1514 to align # Constraint # added constraint: constraint((T0355)G173.CA, (T0355)T201.CB) [> 3.5050 = 5.8416 < 7.5941] w=0.1514 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)K253.CB) [> 3.9811 = 6.6352 < 8.6257] w=0.1514 to align # Constraint # added constraint: constraint((T0355)F116.CB, (T0355)A150.CB) [> 3.8703 = 6.4506 < 8.3857] w=0.1504 to align # Constraint # added constraint: constraint((T0355)G70.CA, (T0355)A121.CB) [> 4.3046 = 7.1743 < 9.3266] w=0.1495 to align # Constraint # added constraint: constraint((T0355)P35.CB, (T0355)G63.CA) [> 4.0346 = 6.7243 < 8.7416] w=0.1457 to align # Constraint # added constraint: constraint((T0355)I15.CB, (T0355)G63.CA) [> 3.8108 = 6.3513 < 8.2566] w=0.1456 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)D52.CB) [> 3.4705 = 5.7841 < 7.5194] w=0.1450 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)A249.CB) [> 4.3740 = 7.2900 < 9.4771] w=0.1450 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)A124.CB) [> 4.5156 = 7.5261 < 9.7839] w=0.1450 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)F270.CB) [> 3.6555 = 6.0925 < 7.9203] w=0.1450 to align # Constraint # added constraint: constraint((T0355)V164.CB, (T0355)D189.CB) [> 4.2597 = 7.0995 < 9.2294] w=0.1439 to align # Constraint # added constraint: constraint((T0355)H69.CB, (T0355)L108.CB) [> 3.4959 = 5.8265 < 7.5745] w=0.1437 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)Q203.CB) [> 3.5476 = 5.9126 < 7.6864] w=0.1437 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)T84.CB) [> 3.8349 = 6.3916 < 8.3090] w=0.1428 to align # Constraint # added constraint: constraint((T0355)M50.CB, (T0355)P112.CB) [> 4.0625 = 6.7708 < 8.8021] w=0.1427 to align # Constraint # added constraint: constraint((T0355)F74.CB, (T0355)G123.CA) [> 3.8714 = 6.4523 < 8.3880] w=0.1398 to align # Constraint # added constraint: constraint((T0355)H172.CB, (T0355)E213.CB) [> 4.2505 = 7.0841 < 9.2094] w=0.1396 to align # Constraint # added constraint: constraint((T0355)Y37.CB, (T0355)A53.CB) [> 4.1289 = 6.8815 < 8.9460] w=0.1391 to align # Constraint # added constraint: constraint((T0355)P35.CB, (T0355)I65.CB) [> 3.8493 = 6.4155 < 8.3402] w=0.1391 to align # Constraint # added constraint: constraint((T0355)A11.CB, (T0355)H62.CB) [> 3.6223 = 6.0371 < 7.8482] w=0.1390 to align # Constraint # added constraint: constraint((T0355)N130.CB, (T0355)V164.CB) [> 4.1110 = 6.8517 < 8.9072] w=0.1390 to align # Constraint # added constraint: constraint((T0355)A11.CB, (T0355)G63.CA) [> 4.0994 = 6.8323 < 8.8821] w=0.1389 to align # Constraint # added constraint: constraint((T0355)Y37.CB, (T0355)A249.CB) [> 4.2207 = 7.0345 < 9.1449] w=0.1385 to align # Constraint # added constraint: constraint((T0355)R38.CB, (T0355)I65.CB) [> 4.2381 = 7.0635 < 9.1825] w=0.1384 to align # Constraint # added constraint: constraint((T0355)I12.CB, (T0355)G245.CA) [> 3.6122 = 6.0203 < 7.8264] w=0.1383 to align # Constraint # added constraint: constraint((T0355)A150.CB, (T0355)V164.CB) [> 4.0135 = 6.6892 < 8.6959] w=0.1383 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)F87.CB) [> 4.4223 = 7.3705 < 9.5816] w=0.1383 to align # Constraint # added constraint: constraint((T0355)P112.CB, (T0355)A150.CB) [> 3.9389 = 6.5648 < 8.5343] w=0.1380 to align # Constraint # added constraint: constraint((T0355)N134.CB, (T0355)V164.CB) [> 3.9077 = 6.5128 < 8.4666] w=0.1379 to align # Constraint # added constraint: constraint((T0355)M151.CB, (T0355)L186.CB) [> 3.8607 = 6.4345 < 8.3648] w=0.1372 to align # Constraint # added constraint: constraint((T0355)I236.CB, (T0355)G245.CA) [> 4.4417 = 7.4028 < 9.6236] w=0.1328 to align # Constraint # added constraint: constraint((T0355)R36.CB, (T0355)E67.CB) [> 3.9753 = 6.6255 < 8.6131] w=0.1325 to align # Constraint # added constraint: constraint((T0355)N39.CB, (T0355)E67.CB) [> 3.5576 = 5.9293 < 7.7081] w=0.1325 to align # Constraint # added constraint: constraint((T0355)G33.CA, (T0355)H62.CB) [> 3.3449 = 5.5749 < 7.2474] w=0.1325 to align # Constraint # added constraint: constraint((T0355)R38.CB, (T0355)V66.CB) [> 4.2807 = 7.1344 < 9.2747] w=0.1325 to align # Constraint # added constraint: constraint((T0355)P35.CB, (T0355)M61.CB) [> 3.3295 = 5.5491 < 7.2139] w=0.1325 to align # Constraint # added constraint: constraint((T0355)P35.CB, (T0355)L64.CB) [> 3.8552 = 6.4253 < 8.3528] w=0.1325 to align # Constraint # added constraint: constraint((T0355)H69.CB, (T0355)D79.CB) [> 2.8991 = 4.8319 < 6.2814] w=0.1319 to align # Constraint # added constraint: constraint((T0355)R38.CB, (T0355)D52.CB) [> 3.6698 = 6.1164 < 7.9513] w=0.1317 to align # Constraint # added constraint: constraint((T0355)V170.CB, (T0355)T201.CB) [> 3.8076 = 6.3460 < 8.2498] w=0.1317 to align # Constraint # added constraint: constraint((T0355)A121.CB, (T0355)W132.CB) [> 4.0338 = 6.7230 < 8.7399] w=0.1316 to align # Constraint # added constraint: constraint((T0355)H172.CB, (T0355)T201.CB) [> 4.1665 = 6.9442 < 9.0274] w=0.1316 to align # Constraint # added constraint: constraint((T0355)S229.CB, (T0355)V248.CB) [> 3.6489 = 6.0816 < 7.9060] w=0.1305 to align # Constraint # added constraint: constraint((T0355)P77.CB, (T0355)A121.CB) [> 4.0929 = 6.8215 < 8.8680] w=0.1266 to align # Constraint # added constraint: constraint((T0355)A34.CB, (T0355)M61.CB) [> 3.8470 = 6.4117 < 8.3352] w=0.1259 to align # Constraint # added constraint: constraint((T0355)N232.CB, (T0355)S269.CB) [> 4.4360 = 7.3934 < 9.6114] w=0.1253 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)S229.CB) [> 3.5186 = 5.8644 < 7.6237] w=0.1252 to align # Constraint # added constraint: constraint((T0355)N39.CB, (T0355)A249.CB) [> 2.1107 = 3.5179 < 4.5733] w=0.1252 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)S85.CB) [> 3.5317 = 5.8861 < 7.6520] w=0.1252 to align # Constraint # added constraint: constraint((T0355)H69.CB, (T0355)D78.CB) [> 3.3320 = 5.5533 < 7.2193] w=0.1252 to align # Constraint # added constraint: constraint((T0355)G173.CA, (T0355)S182.CB) [> 3.7754 = 6.2924 < 8.1801] w=0.1251 to align # Constraint # added constraint: constraint((T0355)P29.CB, (T0355)A40.CB) [> 3.6928 = 6.1546 < 8.0010] w=0.1251 to align # Constraint # added constraint: constraint((T0355)M42.CB, (T0355)V90.CB) [> 3.5226 = 5.8709 < 7.6322] w=0.1238 to align # Constraint # added constraint: constraint((T0355)H62.CB, (T0355)I113.CB) [> 4.1164 = 6.8607 < 8.9189] w=0.1231 to align # Constraint # added constraint: constraint((T0355)H69.CB, (T0355)A121.CB) [> 3.3403 = 5.5672 < 7.2373] w=0.1230 to align # Constraint # added constraint: constraint((T0355)G60.CA, (T0355)R275.CB) [> 3.5519 = 5.9198 < 7.6958] w=0.1200 to align # Constraint # added constraint: constraint((T0355)D194.CB, (T0355)L223.CB) [> 3.5533 = 5.9221 < 7.6987] w=0.1200 to align # Constraint # added constraint: constraint((T0355)V129.CB, (T0355)H161.CB) [> 3.7508 = 6.2513 < 8.1266] w=0.1192 to align # Constraint # added constraint: constraint((T0355)G256.CA, (T0355)V267.CB) [> 3.9513 = 6.5855 < 8.5611] w=0.1192 to align # Constraint # added constraint: constraint((T0355)F16.CB, (T0355)P224.CB) [> 3.2758 = 5.4597 < 7.0976] w=0.1192 to align # Constraint # added constraint: constraint((T0355)N39.CB, (T0355)K253.CB) [> 3.0178 = 5.0297 < 6.5386] w=0.1187 to align # Constraint # added constraint: constraint((T0355)V170.CB, (T0355)D196.CB) [> 3.6461 = 6.0768 < 7.8998] w=0.1187 to align # Constraint # added constraint: constraint((T0355)P35.CB, (T0355)V248.CB) [> 3.7231 = 6.2052 < 8.0668] w=0.1186 to align # Constraint # added constraint: constraint((T0355)D180.CB, (T0355)E213.CB) [> 3.4873 = 5.8122 < 7.5558] w=0.1186 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)F116.CB) [> 4.3190 = 7.1984 < 9.3579] w=0.1186 to align # Constraint # added constraint: constraint((T0355)G202.CA, (T0355)S250.CB) [> 3.1876 = 5.3127 < 6.9065] w=0.1186 to align # Constraint # added constraint: constraint((T0355)A117.CB, (T0355)I247.CB) [> 4.4291 = 7.3819 < 9.5965] w=0.1186 to align # Constraint # added constraint: constraint((T0355)I12.CB, (T0355)L22.CB) [> 3.3493 = 5.5822 < 7.2569] w=0.1185 to align # Constraint # added constraint: constraint((T0355)F16.CB, (T0355)G63.CA) [> 4.2328 = 7.0547 < 9.1711] w=0.1185 to align # Constraint # added constraint: constraint((T0355)P35.CB, (T0355)A249.CB) [> 4.4302 = 7.3836 < 9.5988] w=0.1185 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)L108.CB) [> 3.7120 = 6.1866 < 8.0426] w=0.1182 to align # Constraint # added constraint: constraint((T0355)E83.CB, (T0355)S250.CB) [> 2.5057 = 4.1762 < 5.4290] w=0.1141 to align # Constraint # added constraint: constraint((T0355)T84.CB, (T0355)S250.CB) [> 3.6992 = 6.1654 < 8.0150] w=0.1141 to align # Constraint # added constraint: constraint((T0355)K76.CB, (T0355)A121.CB) [> 4.0689 = 6.7815 < 8.8160] w=0.1133 to align # Constraint # added constraint: constraint((T0355)N39.CB, (T0355)V66.CB) [> 3.9182 = 6.5303 < 8.4894] w=0.1127 to align # Constraint # added constraint: constraint((T0355)P35.CB, (T0355)I247.CB) [> 4.2007 = 7.0011 < 9.1014] w=0.1127 to align # Constraint # added constraint: constraint((T0355)A34.CB, (T0355)V246.CB) [> 4.0227 = 6.7045 < 8.7159] w=0.1127 to align # Constraint # added constraint: constraint((T0355)G33.CA, (T0355)G63.CA) [> 4.2677 = 7.1128 < 9.2466] w=0.1127 to align # Constraint # added constraint: constraint((T0355)F126.CB, (T0355)H161.CB) [> 3.6779 = 6.1298 < 7.9687] w=0.1126 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)I65.CB) [> 4.1256 = 6.8759 < 8.9387] w=0.1121 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)T84.CB) [> 3.6571 = 6.0952 < 7.9238] w=0.1120 to align # Constraint # added constraint: constraint((T0355)S75.CB, (T0355)A121.CB) [> 3.3939 = 5.6565 < 7.3534] w=0.1120 to align # Constraint # added constraint: constraint((T0355)G33.CA, (T0355)C49.CB) [> 3.6238 = 6.0396 < 7.8515] w=0.1120 to align # Constraint # added constraint: constraint((T0355)A117.CB, (T0355)V137.CB) [> 3.1015 = 5.1692 < 6.7200] w=0.1120 to align # Constraint # added constraint: constraint((T0355)I177.CB, (T0355)T221.CB) [> 3.7981 = 6.3302 < 8.2293] w=0.1119 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)I199.CB) [> 4.5031 = 7.5052 < 9.7568] w=0.1119 to align # Constraint # added constraint: constraint((T0355)I199.CB, (T0355)S229.CB) [> 4.1236 = 6.8727 < 8.9345] w=0.1116 to align # Constraint # added constraint: constraint((T0355)I113.CB, (T0355)Y153.CB) [> 3.5103 = 5.8505 < 7.6057] w=0.1110 to align # Constraint # added constraint: constraint((T0355)V164.CB, (T0355)V198.CB) [> 3.4100 = 5.6834 < 7.3884] w=0.1105 to align # Constraint # added constraint: constraint((T0355)G70.CA, (T0355)T84.CB) [> 4.2936 = 7.1560 < 9.3028] w=0.1088 to align # Constraint # added constraint: constraint((T0355)P73.CB, (T0355)M88.CB) [> 2.8908 = 4.8180 < 6.2634] w=0.1075 to align # Constraint # added constraint: constraint((T0355)F74.CB, (T0355)M88.CB) [> 3.8257 = 6.3762 < 8.2890] w=0.1075 to align # Constraint # added constraint: constraint((T0355)P29.CB, (T0355)P73.CB) [> 4.0013 = 6.6688 < 8.6694] w=0.1066 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)G228.CA) [> 3.7091 = 6.1819 < 8.0365] w=0.1062 to align # Constraint # added constraint: constraint((T0355)P32.CB, (T0355)S244.CB) [> 3.9665 = 6.6108 < 8.5940] w=0.1061 to align # Constraint # added constraint: constraint((T0355)G33.CA, (T0355)V246.CB) [> 3.3157 = 5.5262 < 7.1841] w=0.1061 to align # Constraint # added constraint: constraint((T0355)A40.CB, (T0355)A249.CB) [> 4.1850 = 6.9750 < 9.0676] w=0.1054 to align # Constraint # added constraint: constraint((T0355)S229.CB, (T0355)I239.CB) [> 3.7011 = 6.1685 < 8.0191] w=0.1054 to align # Constraint # added constraint: constraint((T0355)G33.CA, (T0355)A48.CB) [> 3.4868 = 5.8114 < 7.5548] w=0.1054 to align # Constraint # added constraint: constraint((T0355)F16.CB, (T0355)G245.CA) [> 3.4261 = 5.7102 < 7.4233] w=0.1054 to align # Constraint # added constraint: constraint((T0355)F16.CB, (T0355)L226.CB) [> 4.0293 = 6.7155 < 8.7302] w=0.1054 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)W132.CB) [> 4.3685 = 7.2809 < 9.4652] w=0.1054 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)A115.CB) [> 3.9274 = 6.5456 < 8.5093] w=0.1053 to align # Constraint # added constraint: constraint((T0355)I15.CB, (T0355)P114.CB) [> 3.9478 = 6.5797 < 8.5536] w=0.1053 to align # Constraint # added constraint: constraint((T0355)G202.CA, (T0355)V227.CB) [> 4.0311 = 6.7186 < 8.7341] w=0.1044 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)M88.CB) [> 3.3053 = 5.5089 < 7.1615] w=0.1022 to align # Constraint # added constraint: constraint((T0355)F87.CB, (T0355)K253.CB) [> 3.1491 = 5.2485 < 6.8231] w=0.1002 to align # Constraint # added constraint: constraint((T0355)F74.CB, (T0355)A124.CB) [> 3.6024 = 6.0040 < 7.8051] w=0.1002 to align # Constraint # added constraint: constraint((T0355)V72.CB, (T0355)K120.CB) [> 3.2840 = 5.4733 < 7.1153] w=0.1001 to align # Constraint # added constraint: constraint((T0355)A34.CB, (T0355)I65.CB) [> 3.1807 = 5.3012 < 6.8915] w=0.0996 to align # Constraint # added constraint: constraint((T0355)A34.CB, (T0355)L64.CB) [> 4.1238 = 6.8729 < 8.9348] w=0.0996 to align # Constraint # added constraint: constraint((T0355)A34.CB, (T0355)I247.CB) [> 2.8382 = 4.7303 < 6.1494] w=0.0996 to align # Constraint # added constraint: constraint((T0355)A30.CB, (T0355)A48.CB) [> 3.1880 = 5.3134 < 6.9074] w=0.0996 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)N68.CB) [> 3.6405 = 6.0675 < 7.8878] w=0.0994 to align # Constraint # added constraint: constraint((T0355)R36.CB, (T0355)V66.CB) [> 4.6382 = 7.7303 < 10.0493] w=0.0989 to align # Constraint # added constraint: constraint((T0355)G245.CA, (T0355)L278.CB) [> 4.4752 = 7.4587 < 9.6963] w=0.0989 to align # Constraint # added constraint: constraint((T0355)Q203.CB, (T0355)S250.CB) [> 3.3490 = 5.5816 < 7.2561] w=0.0989 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)S250.CB) [> 4.3462 = 7.2437 < 9.4168] w=0.0989 to align # Constraint # added constraint: constraint((T0355)P35.CB, (T0355)K253.CB) [> 4.2716 = 7.1194 < 9.2552] w=0.0989 to align # Constraint # added constraint: constraint((T0355)A150.CB, (T0355)A166.CB) [> 3.8998 = 6.4996 < 8.4495] w=0.0989 to align # Constraint # added constraint: constraint((T0355)G202.CA, (T0355)A249.CB) [> 4.1552 = 6.9254 < 9.0030] w=0.0988 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)V72.CB) [> 3.9110 = 6.5184 < 8.4739] w=0.0988 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)E213.CB) [> 4.2011 = 7.0018 < 9.1024] w=0.0988 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)H69.CB) [> 3.8333 = 6.3888 < 8.3055] w=0.0987 to align # Constraint # added constraint: constraint((T0355)Q131.CB, (T0355)F142.CB) [> 4.1242 = 6.8737 < 8.9358] w=0.0987 to align # Constraint # added constraint: constraint((T0355)Y37.CB, (T0355)E254.CB) [> 3.8169 = 6.3615 < 8.2699] w=0.0987 to align # Constraint # added constraint: constraint((T0355)N130.CB, (T0355)A166.CB) [> 4.4655 = 7.4424 < 9.6752] w=0.0987 to align # Constraint # added constraint: constraint((T0355)H69.CB, (T0355)K120.CB) [> 3.8687 = 6.4479 < 8.3823] w=0.0987 to align # Constraint # added constraint: constraint((T0355)V257.CB, (T0355)S269.CB) [> 3.1569 = 5.2615 < 6.8399] w=0.0987 to align # Constraint # added constraint: constraint((T0355)V231.CB, (T0355)S250.CB) [> 4.2800 = 7.1334 < 9.2734] w=0.0987 to align # Constraint # added constraint: constraint((T0355)A34.CB, (T0355)K253.CB) [> 3.4474 = 5.7456 < 7.4693] w=0.0986 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)S75.CB) [> 3.4327 = 5.7211 < 7.4374] w=0.0986 to align # Constraint # added constraint: constraint((T0355)S229.CB, (T0355)S250.CB) [> 4.2119 = 7.0198 < 9.1258] w=0.0977 to align # Constraint # added constraint: constraint((T0355)S229.CB, (T0355)V246.CB) [> 3.9914 = 6.6523 < 8.6481] w=0.0976 to align # Constraint # added constraint: constraint((T0355)H69.CB, (T0355)G122.CA) [> 3.8484 = 6.4141 < 8.3383] w=0.0968 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)V227.CB) [> 3.6899 = 6.1498 < 7.9947] w=0.0968 to align # Constraint # added constraint: constraint((T0355)V72.CB, (T0355)V101.CB) [> 2.9945 = 4.9908 < 6.4881] w=0.0936 to align # Constraint # added constraint: constraint((T0355)P73.CB, (T0355)T92.CB) [> 3.2656 = 5.4427 < 7.0755] w=0.0936 to align # Constraint # added constraint: constraint((T0355)Y46.CB, (T0355)G100.CA) [> 4.0010 = 6.6683 < 8.6688] w=0.0936 to align # Constraint # added constraint: constraint((T0355)S75.CB, (T0355)T92.CB) [> 4.2777 = 7.1296 < 9.2684] w=0.0936 to align # Constraint # added constraint: constraint((T0355)I12.CB, (T0355)A115.CB) [> 2.9276 = 4.8793 < 6.3431] w=0.0935 to align # Constraint # added constraint: constraint((T0355)P32.CB, (T0355)V246.CB) [> 4.2573 = 7.0954 < 9.2241] w=0.0929 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)V72.CB) [> 3.6490 = 6.0817 < 7.9063] w=0.0929 to align # Constraint # added constraint: constraint((T0355)V72.CB, (T0355)A124.CB) [> 3.7198 = 6.1997 < 8.0597] w=0.0926 to align # Constraint # added constraint: constraint((T0355)T84.CB, (T0355)A249.CB) [> 3.6740 = 6.1233 < 7.9603] w=0.0923 to align # Constraint # added constraint: constraint((T0355)E83.CB, (T0355)A249.CB) [> 4.6926 = 7.8211 < 10.1674] w=0.0923 to align # Constraint # added constraint: constraint((T0355)M42.CB, (T0355)V66.CB) [> 4.1590 = 6.9317 < 9.0112] w=0.0922 to align # Constraint # added constraint: constraint((T0355)R38.CB, (T0355)L64.CB) [> 3.5766 = 5.9611 < 7.7494] w=0.0922 to align # Constraint # added constraint: constraint((T0355)R36.CB, (T0355)M61.CB) [> 2.9614 = 4.9356 < 6.4163] w=0.0922 to align # Constraint # added constraint: constraint((T0355)D43.CB, (T0355)D52.CB) [> 4.1470 = 6.9117 < 8.9852] w=0.0922 to align # Constraint # added constraint: constraint((T0355)I118.CB, (T0355)W132.CB) [> 4.3848 = 7.3079 < 9.5003] w=0.0922 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)F87.CB) [> 3.4380 = 5.7299 < 7.4489] w=0.0922 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)A115.CB) [> 3.8823 = 6.4705 < 8.4117] w=0.0922 to align # Constraint # added constraint: constraint((T0355)T178.CB, (T0355)T221.CB) [> 4.2630 = 7.1050 < 9.2365] w=0.0922 to align # Constraint # added constraint: constraint((T0355)A9.CB, (T0355)G197.CA) [> 3.7996 = 6.3326 < 8.2324] w=0.0921 to align # Constraint # added constraint: constraint((T0355)H69.CB, (T0355)V107.CB) [> 3.5146 = 5.8576 < 7.6149] w=0.0921 to align # Constraint # added constraint: constraint((T0355)P112.CB, (T0355)Y153.CB) [> 3.4609 = 5.7682 < 7.4986] w=0.0921 to align # Constraint # added constraint: constraint((T0355)P73.CB, (T0355)V91.CB) [> 2.5775 = 4.2958 < 5.5845] w=0.0870 to align # Constraint # added constraint: constraint((T0355)V72.CB, (T0355)A119.CB) [> 4.2127 = 7.0211 < 9.1275] w=0.0870 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)P73.CB) [> 3.9749 = 6.6249 < 8.6123] w=0.0868 to align # Constraint # added constraint: constraint((T0355)S41.CB, (T0355)F87.CB) [> 3.3298 = 5.5496 < 7.2144] w=0.0863 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)I247.CB) [> 4.1756 = 6.9593 < 9.0471] w=0.0863 to align # Constraint # added constraint: constraint((T0355)R36.CB, (T0355)S250.CB) [> 3.8883 = 6.4805 < 8.4247] w=0.0861 to align # Constraint # added constraint: constraint((T0355)P32.CB, (T0355)P224.CB) [> 4.2316 = 7.0527 < 9.1685] w=0.0857 to align # Constraint # added constraint: constraint((T0355)N39.CB, (T0355)S250.CB) [> 3.2963 = 5.4938 < 7.1419] w=0.0857 to align # Constraint # added constraint: constraint((T0355)M42.CB, (T0355)A53.CB) [> 3.6681 = 6.1135 < 7.9476] w=0.0857 to align # Constraint # added constraint: constraint((T0355)T178.CB, (T0355)A200.CB) [> 3.7539 = 6.2566 < 8.1335] w=0.0857 to align # Constraint # added constraint: constraint((T0355)M50.CB, (T0355)F87.CB) [> 3.8600 = 6.4334 < 8.3634] w=0.0856 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)A40.CB) [> 3.9077 = 6.5128 < 8.4667] w=0.0856 to align # Constraint # added constraint: constraint((T0355)G70.CA, (T0355)A119.CB) [> 3.7506 = 6.2510 < 8.1264] w=0.0856 to align # Constraint # added constraint: constraint((T0355)A9.CB, (T0355)D196.CB) [> 3.7038 = 6.1729 < 8.0248] w=0.0855 to align # Constraint # added constraint: constraint((T0355)V164.CB, (T0355)I199.CB) [> 4.3073 = 7.1789 < 9.3325] w=0.0845 to align # Constraint # added constraint: constraint((T0355)G70.CA, (T0355)G122.CA) [> 3.3998 = 5.6664 < 7.3663] w=0.0836 to align # Constraint # added constraint: constraint((T0355)Q203.CB, (T0355)G228.CA) [> 4.1779 = 6.9633 < 9.0522] w=0.0836 to align # Constraint # added constraint: constraint((T0355)E83.CB, (T0355)K253.CB) [> 3.1086 = 5.1810 < 6.7352] w=0.0804 to align # Constraint # added constraint: constraint((T0355)P73.CB, (T0355)V96.CB) [> 3.0308 = 5.0513 < 6.5667] w=0.0804 to align # Constraint # added constraint: constraint((T0355)V72.CB, (T0355)I118.CB) [> 3.8371 = 6.3951 < 8.3136] w=0.0804 to align # Constraint # added constraint: constraint((T0355)V72.CB, (T0355)T98.CB) [> 3.5840 = 5.9734 < 7.7654] w=0.0804 to align # Constraint # added constraint: constraint((T0355)A40.CB, (T0355)V91.CB) [> 2.6492 = 4.4153 < 5.7399] w=0.0798 to align # Constraint # added constraint: constraint((T0355)D52.CB, (T0355)G256.CA) [> 4.3687 = 7.2812 < 9.4656] w=0.0797 to align # Constraint # added constraint: constraint((T0355)T178.CB, (T0355)E213.CB) [> 3.6906 = 6.1510 < 7.9964] w=0.0797 to align # Constraint # added constraint: constraint((T0355)I15.CB, (T0355)A115.CB) [> 3.2536 = 5.4226 < 7.0494] w=0.0797 to align # Constraint # added constraint: constraint((T0355)K20.CB, (T0355)G60.CA) [> 3.9535 = 6.5892 < 8.5660] w=0.0791 to align # Constraint # added constraint: constraint((T0355)H172.CB, (T0355)G197.CA) [> 3.7713 = 6.2855 < 8.1711] w=0.0791 to align # Constraint # added constraint: constraint((T0355)F74.CB, (T0355)G122.CA) [> 2.5651 = 4.2752 < 5.5578] w=0.0790 to align # Constraint # added constraint: constraint((T0355)Y37.CB, (T0355)V248.CB) [> 4.2119 = 7.0198 < 9.1257] w=0.0790 to align # Constraint # added constraint: constraint((T0355)Y37.CB, (T0355)I247.CB) [> 3.0963 = 5.1605 < 6.7086] w=0.0790 to align # Constraint # added constraint: constraint((T0355)M50.CB, (T0355)V90.CB) [> 2.7963 = 4.6604 < 6.0586] w=0.0790 to align # Constraint # added constraint: constraint((T0355)M143.CB, (T0355)S168.CB) [> 3.9686 = 6.6143 < 8.5985] w=0.0790 to align # Constraint # added constraint: constraint((T0355)N207.CB, (T0355)N235.CB) [> 3.6461 = 6.0768 < 7.8999] w=0.0790 to align # Constraint # added constraint: constraint((T0355)G70.CA, (T0355)K120.CB) [> 3.2964 = 5.4940 < 7.1422] w=0.0790 to align # Constraint # added constraint: constraint((T0355)W258.CB, (T0355)S269.CB) [> 2.8179 = 4.6965 < 6.1055] w=0.0790 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)L190.CB) [> 3.7560 = 6.2601 < 8.1381] w=0.0787 to align # Constraint # added constraint: constraint((T0355)V72.CB, (T0355)G122.CA) [> 3.8186 = 6.3643 < 8.2736] w=0.0770 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)G122.CA) [> 4.0106 = 6.6844 < 8.6897] w=0.0770 to align # Constraint # added constraint: constraint((T0355)V237.CB, (T0355)L278.CB) [> 4.3760 = 7.2933 < 9.4813] w=0.0725 to align # Constraint # added constraint: constraint((T0355)A86.CB, (T0355)G122.CA) [> 3.3270 = 5.5450 < 7.2085] w=0.0725 to align # Constraint # added constraint: constraint((T0355)N39.CB, (T0355)M50.CB) [> 3.3671 = 5.6119 < 7.2955] w=0.0725 to align # Constraint # added constraint: constraint((T0355)G70.CA, (T0355)I118.CB) [> 4.0873 = 6.8122 < 8.8558] w=0.0724 to align # Constraint # added constraint: constraint((T0355)V129.CB, (T0355)M143.CB) [> 3.7486 = 6.2477 < 8.1220] w=0.0724 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)T98.CB) [> 3.9692 = 6.6153 < 8.5999] w=0.0724 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)S250.CB) [> 4.5920 = 7.6534 < 9.9494] w=0.0724 to align # Constraint # added constraint: constraint((T0355)S89.CB, (T0355)I118.CB) [> 3.6934 = 6.1557 < 8.0024] w=0.0724 to align # Constraint # added constraint: constraint((T0355)A8.CB, (T0355)G63.CA) [> 3.8480 = 6.4133 < 8.3373] w=0.0724 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)K120.CB) [> 3.7913 = 6.3189 < 8.2145] w=0.0724 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)L64.CB) [> 3.5249 = 5.8748 < 7.6373] w=0.0722 to align # Constraint # added constraint: constraint((T0355)I199.CB, (T0355)E213.CB) [> 3.8233 = 6.3722 < 8.2838] w=0.0721 to align # Constraint # added constraint: constraint((T0355)M61.CB, (T0355)R275.CB) [> 4.1703 = 6.9505 < 9.0357] w=0.0673 to align # Constraint # added constraint: constraint((T0355)M42.CB, (T0355)G256.CA) [> 4.0719 = 6.7866 < 8.8226] w=0.0666 to align # Constraint # added constraint: constraint((T0355)Y46.CB, (T0355)I95.CB) [> 3.8060 = 6.3434 < 8.2464] w=0.0662 to align # Constraint # added constraint: constraint((T0355)S75.CB, (T0355)G122.CA) [> 4.2922 = 7.1537 < 9.2998] w=0.0659 to align # Constraint # added constraint: constraint((T0355)F74.CB, (T0355)K120.CB) [> 3.7950 = 6.3249 < 8.2224] w=0.0659 to align # Constraint # added constraint: constraint((T0355)R152.CB, (T0355)L186.CB) [> 3.7560 = 6.2600 < 8.1381] w=0.0659 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)G70.CA) [> 4.0470 = 6.7451 < 8.7686] w=0.0658 to align # Constraint # added constraint: constraint((T0355)W259.CB, (T0355)S269.CB) [> 3.2471 = 5.4119 < 7.0354] w=0.0658 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)D52.CB) [> 4.3390 = 7.2317 < 9.4012] w=0.0658 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)G122.CA) [> 4.3248 = 7.2079 < 9.3703] w=0.0658 to align # Constraint # added constraint: constraint((T0355)W259.CB, (T0355)F270.CB) [> 3.7226 = 6.2043 < 8.0656] w=0.0658 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)P112.CB) [> 4.1342 = 6.8903 < 8.9574] w=0.0657 to align # Constraint # added constraint: constraint((T0355)I45.CB, (T0355)V91.CB) [> 3.7845 = 6.3075 < 8.1997] w=0.0648 to align # Constraint # added constraint: constraint((T0355)V170.CB, (T0355)Q203.CB) [> 4.1575 = 6.9292 < 9.0079] w=0.0648 to align # Constraint # added constraint: constraint((T0355)S75.CB, (T0355)M88.CB) [> 4.6330 = 7.7217 < 10.0382] w=0.0613 to align # Constraint # added constraint: constraint((T0355)A86.CB, (T0355)K253.CB) [> 4.5350 = 7.5584 < 9.8259] w=0.0593 to align # Constraint # added constraint: constraint((T0355)S251.CB, (T0355)A274.CB) [> 4.4117 = 7.3528 < 9.5586] w=0.0593 to align # Constraint # added constraint: constraint((T0355)L22.CB, (T0355)P224.CB) [> 4.5965 = 7.6609 < 9.9591] w=0.0593 to align # Constraint # added constraint: constraint((T0355)Q203.CB, (T0355)A249.CB) [> 4.1967 = 6.9945 < 9.0928] w=0.0593 to align # Constraint # added constraint: constraint((T0355)G173.CA, (T0355)V198.CB) [> 4.1316 = 6.8860 < 8.9518] w=0.0593 to align # Constraint # added constraint: constraint((T0355)E213.CB, (T0355)V227.CB) [> 4.4943 = 7.4906 < 9.7377] w=0.0593 to align # Constraint # added constraint: constraint((T0355)M61.CB, (T0355)F270.CB) [> 4.4072 = 7.3453 < 9.5490] w=0.0593 to align # Constraint # added constraint: constraint((T0355)R204.CB, (T0355)E213.CB) [> 4.3149 = 7.1915 < 9.3489] w=0.0593 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)S182.CB) [> 4.0969 = 6.8281 < 8.8765] w=0.0593 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)I105.CB) [> 3.9550 = 6.5916 < 8.5691] w=0.0593 to align # Constraint # added constraint: constraint((T0355)F74.CB, (T0355)A119.CB) [> 3.8362 = 6.3936 < 8.3117] w=0.0593 to align # Constraint # added constraint: constraint((T0355)N39.CB, (T0355)I65.CB) [> 2.8165 = 4.6942 < 6.1025] w=0.0593 to align # Constraint # added constraint: constraint((T0355)R38.CB, (T0355)V248.CB) [> 3.6563 = 6.0939 < 7.9221] w=0.0593 to align # Constraint # added constraint: constraint((T0355)A9.CB, (T0355)L56.CB) [> 4.1432 = 6.9053 < 8.9769] w=0.0593 to align # Constraint # added constraint: constraint((T0355)D71.CB, (T0355)A121.CB) [> 3.2921 = 5.4868 < 7.1329] w=0.0593 to align # Constraint # added constraint: constraint((T0355)N260.CB, (T0355)F270.CB) [> 4.1075 = 6.8459 < 8.8997] w=0.0592 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)G70.CA) [> 3.6391 = 6.0651 < 7.8847] w=0.0591 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)G63.CA) [> 3.5873 = 5.9788 < 7.7724] w=0.0591 to align # Constraint # added constraint: constraint((T0355)D52.CB, (T0355)M61.CB) [> 4.1945 = 6.9908 < 9.0880] w=0.0591 to align # Constraint # added constraint: constraint((T0355)G81.CA, (T0355)Y136.CB) [> 3.3470 = 5.5784 < 7.2519] w=0.0583 to align # Constraint # added constraint: constraint((T0355)Y46.CB, (T0355)T98.CB) [> 3.4241 = 5.7068 < 7.4188] w=0.0582 to align # Constraint # added constraint: constraint((T0355)V237.CB, (T0355)F270.CB) [> 3.9302 = 6.5503 < 8.5154] w=0.0571 to align # Constraint # added constraint: constraint((T0355)A166.CB, (T0355)A200.CB) [> 3.5329 = 5.8882 < 7.6546] w=0.0571 to align # Constraint # added constraint: constraint((T0355)D71.CB, (T0355)T84.CB) [> 2.8787 = 4.7978 < 6.2372] w=0.0561 to align # Constraint # added constraint: constraint((T0355)N39.CB, (T0355)P73.CB) [> 3.8297 = 6.3828 < 8.2976] w=0.0541 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)A53.CB) [> 3.3172 = 5.5287 < 7.1873] w=0.0527 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)L64.CB) [> 3.4735 = 5.7891 < 7.5258] w=0.0527 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)A249.CB) [> 4.1013 = 6.8356 < 8.8862] w=0.0527 to align # Constraint # added constraint: constraint((T0355)R204.CB, (T0355)G228.CA) [> 3.9890 = 6.6484 < 8.6429] w=0.0527 to align # Constraint # added constraint: constraint((T0355)R18.CB, (T0355)H62.CB) [> 4.1061 = 6.8434 < 8.8965] w=0.0527 to align # Constraint # added constraint: constraint((T0355)S85.CB, (T0355)V96.CB) [> 3.7406 = 6.2343 < 8.1046] w=0.0527 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)K76.CB) [> 3.4876 = 5.8126 < 7.5564] w=0.0527 to align # Constraint # added constraint: constraint((T0355)A174.CB, (T0355)A200.CB) [> 3.9625 = 6.6042 < 8.5855] w=0.0527 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)A117.CB) [> 4.7003 = 7.8337 < 10.1839] w=0.0527 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)A117.CB) [> 3.5975 = 5.9958 < 7.7946] w=0.0527 to align # Constraint # added constraint: constraint((T0355)A8.CB, (T0355)H62.CB) [> 4.4224 = 7.3706 < 9.5818] w=0.0526 to align # Constraint # added constraint: constraint((T0355)N260.CB, (T0355)S269.CB) [> 3.2194 = 5.3657 < 6.9754] w=0.0526 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)S75.CB) [> 4.0231 = 6.7052 < 8.7167] w=0.0526 to align # Constraint # added constraint: constraint((T0355)A119.CB, (T0355)H169.CB) [> 4.4465 = 7.4108 < 9.6340] w=0.0516 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)Q203.CB) [> 4.1256 = 6.8760 < 8.9388] w=0.0505 to align # Constraint # added constraint: constraint((T0355)A30.CB, (T0355)K253.CB) [> 4.3376 = 7.2293 < 9.3981] w=0.0468 to align # Constraint # added constraint: constraint((T0355)K125.CB, (T0355)Y153.CB) [> 3.8821 = 6.4701 < 8.4111] w=0.0468 to align # Constraint # added constraint: constraint((T0355)A166.CB, (T0355)A176.CB) [> 4.6525 = 7.7541 < 10.0803] w=0.0462 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)M143.CB) [> 4.4129 = 7.3548 < 9.5612] w=0.0462 to align # Constraint # added constraint: constraint((T0355)A117.CB, (T0355)L226.CB) [> 4.2088 = 7.0146 < 9.1190] w=0.0462 to align # Constraint # added constraint: constraint((T0355)M143.CB, (T0355)H169.CB) [> 3.5812 = 5.9686 < 7.7592] w=0.0461 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)K253.CB) [> 4.0287 = 6.7145 < 8.7289] w=0.0461 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)V96.CB) [> 3.5092 = 5.8487 < 7.6033] w=0.0461 to align # Constraint # added constraint: constraint((T0355)S75.CB, (T0355)A119.CB) [> 4.5162 = 7.5269 < 9.7850] w=0.0461 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)A53.CB) [> 4.1772 = 6.9620 < 9.0507] w=0.0461 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)E213.CB) [> 3.6010 = 6.0017 < 7.8022] w=0.0461 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)Y136.CB) [> 4.0665 = 6.7775 < 8.8108] w=0.0461 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)A135.CB) [> 4.1838 = 6.9729 < 9.0648] w=0.0461 to align # Constraint # added constraint: constraint((T0355)D71.CB, (T0355)A119.CB) [> 3.9882 = 6.6470 < 8.6412] w=0.0461 to align # Constraint # added constraint: constraint((T0355)K120.CB, (T0355)Y136.CB) [> 4.1279 = 6.8798 < 8.9438] w=0.0461 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)K120.CB) [> 4.4855 = 7.4758 < 9.7185] w=0.0461 to align # Constraint # added constraint: constraint((T0355)I118.CB, (T0355)A135.CB) [> 4.4330 = 7.3882 < 9.6047] w=0.0461 to align # Constraint # added constraint: constraint((T0355)M50.CB, (T0355)L64.CB) [> 4.2617 = 7.1028 < 9.2337] w=0.0459 to align # Constraint # added constraint: constraint((T0355)D52.CB, (T0355)W259.CB) [> 3.2799 = 5.4666 < 7.1066] w=0.0451 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)G202.CA) [> 3.4180 = 5.6966 < 7.4056] w=0.0440 to align # Constraint # added constraint: constraint((T0355)D71.CB, (T0355)F87.CB) [> 3.5508 = 5.9179 < 7.6933] w=0.0430 to align # Constraint # added constraint: constraint((T0355)D71.CB, (T0355)I80.CB) [> 3.7274 = 6.2124 < 8.0761] w=0.0429 to align # Constraint # added constraint: constraint((T0355)A174.CB, (T0355)V198.CB) [> 3.6534 = 6.0890 < 7.9157] w=0.0396 to align # Constraint # added constraint: constraint((T0355)A179.CB, (T0355)Q203.CB) [> 4.2684 = 7.1139 < 9.2481] w=0.0396 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)I239.CB) [> 3.3897 = 5.6495 < 7.3444] w=0.0396 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)I105.CB) [> 3.4779 = 5.7964 < 7.5354] w=0.0395 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)A119.CB) [> 4.3205 = 7.2008 < 9.3611] w=0.0395 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)L226.CB) [> 4.5243 = 7.5404 < 9.8025] w=0.0395 to align # Constraint # added constraint: constraint((T0355)V237.CB, (T0355)L281.CB) [> 3.6618 = 6.1030 < 7.9339] w=0.0395 to align # Constraint # added constraint: constraint((T0355)S250.CB, (T0355)F270.CB) [> 3.3288 = 5.5480 < 7.2124] w=0.0395 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)S250.CB) [> 4.4620 = 7.4367 < 9.6677] w=0.0395 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)I118.CB) [> 4.5600 = 7.6000 < 9.8800] w=0.0395 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)I65.CB) [> 4.2174 = 7.0290 < 9.1377] w=0.0395 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)K120.CB) [> 3.5162 = 5.8603 < 7.6183] w=0.0395 to align # Constraint # added constraint: constraint((T0355)D71.CB, (T0355)K120.CB) [> 2.4998 = 4.1664 < 5.4163] w=0.0395 to align # Constraint # added constraint: constraint((T0355)H175.CB, (T0355)E213.CB) [> 3.4360 = 5.7267 < 7.4447] w=0.0394 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)I45.CB) [> 3.7078 = 6.1797 < 8.0336] w=0.0394 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)G63.CA) [> 4.0196 = 6.6993 < 8.7091] w=0.0393 to align # Constraint # added constraint: constraint((T0355)L226.CB, (T0355)I239.CB) [> 4.2128 = 7.0214 < 9.1278] w=0.0385 to align # Constraint # added constraint: constraint((T0355)V246.CB, (T0355)L281.CB) [> 4.3127 = 7.1879 < 9.3443] w=0.0330 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)L281.CB) [> 3.0492 = 5.0820 < 6.6066] w=0.0330 to align # Constraint # added constraint: constraint((T0355)V248.CB, (T0355)L281.CB) [> 3.7507 = 6.2512 < 8.1265] w=0.0330 to align # Constraint # added constraint: constraint((T0355)D52.CB, (T0355)F270.CB) [> 4.1955 = 6.9925 < 9.0902] w=0.0330 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)M61.CB) [> 2.9503 = 4.9171 < 6.3923] w=0.0330 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)G63.CA) [> 4.1391 = 6.8984 < 8.9680] w=0.0330 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)I247.CB) [> 3.1739 = 5.2898 < 6.8767] w=0.0330 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)V248.CB) [> 4.1560 = 6.9266 < 9.0046] w=0.0330 to align # Constraint # added constraint: constraint((T0355)N134.CB, (T0355)S168.CB) [> 3.8230 = 6.3716 < 8.2831] w=0.0330 to align # Constraint # added constraint: constraint((T0355)V237.CB, (T0355)A280.CB) [> 4.1218 = 6.8697 < 8.9306] w=0.0330 to align # Constraint # added constraint: constraint((T0355)D52.CB, (T0355)L64.CB) [> 4.0325 = 6.7208 < 8.7371] w=0.0330 to align # Constraint # added constraint: constraint((T0355)I45.CB, (T0355)I95.CB) [> 3.6269 = 6.0449 < 7.8583] w=0.0330 to align # Constraint # added constraint: constraint((T0355)G122.CA, (T0355)E213.CB) [> 3.6469 = 6.0782 < 7.9017] w=0.0330 to align # Constraint # added constraint: constraint((T0355)I45.CB, (T0355)V66.CB) [> 4.1287 = 6.8812 < 8.9456] w=0.0330 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)I105.CB) [> 4.1374 = 6.8956 < 8.9643] w=0.0329 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)I105.CB) [> 4.1999 = 6.9999 < 9.0999] w=0.0329 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)I45.CB) [> 3.0493 = 5.0821 < 6.6068] w=0.0329 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)A119.CB) [> 4.4461 = 7.4102 < 9.6333] w=0.0329 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)F116.CB) [> 4.4240 = 7.3734 < 9.5854] w=0.0329 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)K253.CB) [> 3.9684 = 6.6140 < 8.5982] w=0.0329 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)I65.CB) [> 3.8279 = 6.3799 < 8.2938] w=0.0329 to align # Constraint # added constraint: constraint((T0355)V237.CB, (T0355)S269.CB) [> 4.2475 = 7.0791 < 9.2028] w=0.0328 to align # Constraint # added constraint: constraint((T0355)M50.CB, (T0355)M61.CB) [> 4.4348 = 7.3913 < 9.6087] w=0.0327 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)M61.CB) [> 2.5872 = 4.3120 < 5.6056] w=0.0327 to align # Constraint # added constraint: constraint((T0355)N139.CB, (T0355)H169.CB) [> 3.7840 = 6.3066 < 8.1986] w=0.0319 to align # Constraint # added constraint: constraint((T0355)G228.CA, (T0355)G245.CA) [> 4.2345 = 7.0576 < 9.1748] w=0.0298 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)I105.CB) [> 4.3407 = 7.2344 < 9.4047] w=0.0270 to align # Constraint # added constraint: constraint((T0355)V164.CB, (T0355)A200.CB) [> 3.4891 = 5.8151 < 7.5596] w=0.0264 to align # Constraint # added constraint: constraint((T0355)A174.CB, (T0355)I199.CB) [> 3.8605 = 6.4341 < 8.3644] w=0.0264 to align # Constraint # added constraint: constraint((T0355)H175.CB, (T0355)A200.CB) [> 2.9274 = 4.8790 < 6.3428] w=0.0264 to align # Constraint # added constraint: constraint((T0355)K120.CB, (T0355)E213.CB) [> 4.3184 = 7.1974 < 9.3566] w=0.0264 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)A44.CB) [> 2.5237 = 4.2062 < 5.4681] w=0.0264 to align # Constraint # added constraint: constraint((T0355)G256.CA, (T0355)S269.CB) [> 4.5651 = 7.6086 < 9.8912] w=0.0264 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)G228.CA) [> 4.7750 = 7.9584 < 10.3459] w=0.0263 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)S244.CB) [> 3.8426 = 6.4043 < 8.3257] w=0.0263 to align # Constraint # added constraint: constraint((T0355)S250.CB, (T0355)S269.CB) [> 2.8010 = 4.6684 < 6.0689] w=0.0263 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)K120.CB) [> 4.1596 = 6.9327 < 9.0125] w=0.0263 to align # Constraint # added constraint: constraint((T0355)V227.CB, (T0355)S244.CB) [> 4.3616 = 7.2693 < 9.4500] w=0.0263 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)A119.CB) [> 3.4721 = 5.7869 < 7.5230] w=0.0263 to align # Constraint # added constraint: constraint((T0355)A119.CB, (T0355)H161.CB) [> 3.9686 = 6.6143 < 8.5986] w=0.0263 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)I247.CB) [> 3.8755 = 6.4591 < 8.3968] w=0.0263 to align # Constraint # added constraint: constraint((T0355)K120.CB, (T0355)H161.CB) [> 3.9393 = 6.5655 < 8.5352] w=0.0253 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)V248.CB) [> 4.4023 = 7.3371 < 9.5382] w=0.0253 to align # Constraint # added constraint: constraint((T0355)I199.CB, (T0355)P224.CB) [> 3.8754 = 6.4591 < 8.3968] w=0.0253 to align # Constraint # added constraint: constraint((T0355)V227.CB, (T0355)V248.CB) [> 3.9091 = 6.5152 < 8.4698] w=0.0232 to align # Constraint # added constraint: constraint((T0355)F31.CB, (T0355)G277.CA) [> 4.5494 = 7.5824 < 9.8571] w=0.0204 to align # Constraint # added constraint: constraint((T0355)I177.CB, (T0355)H222.CB) [> 4.5659 = 7.6099 < 9.8929] w=0.0204 to align # Constraint # added constraint: constraint((T0355)K20.CB, (T0355)V237.CB) [> 4.6691 = 7.7819 < 10.1164] w=0.0198 to align # Constraint # added constraint: constraint((T0355)A21.CB, (T0355)V237.CB) [> 4.7055 = 7.8425 < 10.1953] w=0.0198 to align # Constraint # added constraint: constraint((T0355)F31.CB, (T0355)V237.CB) [> 4.7059 = 7.8432 < 10.1962] w=0.0198 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)P224.CB) [> 4.1498 = 6.9164 < 8.9913] w=0.0198 to align # Constraint # added constraint: constraint((T0355)M61.CB, (T0355)V248.CB) [> 4.7642 = 7.9403 < 10.3223] w=0.0198 to align # Constraint # added constraint: constraint((T0355)L252.CB, (T0355)S269.CB) [> 3.2853 = 5.4755 < 7.1182] w=0.0198 to align # Constraint # added constraint: constraint((T0355)S251.CB, (T0355)S269.CB) [> 4.5437 = 7.5729 < 9.8448] w=0.0198 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)F116.CB) [> 4.1822 = 6.9704 < 9.0615] w=0.0198 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)A44.CB) [> 4.2617 = 7.1028 < 9.2337] w=0.0198 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)N68.CB) [> 3.4807 = 5.8012 < 7.5416] w=0.0198 to align # Constraint # added constraint: constraint((T0355)A176.CB, (T0355)T201.CB) [> 3.4668 = 5.7780 < 7.5114] w=0.0198 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)E67.CB) [> 4.2313 = 7.0522 < 9.1679] w=0.0198 to align # Constraint # added constraint: constraint((T0355)M50.CB, (T0355)V66.CB) [> 4.2648 = 7.1080 < 9.2404] w=0.0198 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)I199.CB) [> 4.5995 = 7.6658 < 9.9655] w=0.0198 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)I118.CB) [> 3.5991 = 5.9985 < 7.7981] w=0.0198 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)K120.CB) [> 3.9467 = 6.5777 < 8.5511] w=0.0198 to align # Constraint # added constraint: constraint((T0355)A166.CB, (T0355)L226.CB) [> 3.7055 = 6.1758 < 8.0285] w=0.0198 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)S229.CB) [> 3.7106 = 6.1844 < 8.0397] w=0.0198 to align # Constraint # added constraint: constraint((T0355)M50.CB, (T0355)I105.CB) [> 4.0127 = 6.6878 < 8.6942] w=0.0198 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)S244.CB) [> 4.2419 = 7.0698 < 9.1908] w=0.0198 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)G245.CA) [> 2.6765 = 4.4608 < 5.7990] w=0.0198 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)V246.CB) [> 4.1071 = 6.8451 < 8.8987] w=0.0198 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)G245.CA) [> 3.8305 = 6.3842 < 8.2994] w=0.0198 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)V246.CB) [> 3.1656 = 5.2759 < 6.8587] w=0.0198 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)V248.CB) [> 4.1551 = 6.9252 < 9.0027] w=0.0198 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)G245.CA) [> 4.4913 = 7.4854 < 9.7310] w=0.0198 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)V246.CB) [> 4.2420 = 7.0699 < 9.1909] w=0.0198 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)V248.CB) [> 3.8578 = 6.4296 < 8.3585] w=0.0198 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)A249.CB) [> 4.1919 = 6.9865 < 9.0825] w=0.0198 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)I247.CB) [> 3.7163 = 6.1939 < 8.0520] w=0.0198 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)V248.CB) [> 4.0927 = 6.8212 < 8.8676] w=0.0198 to align # Constraint # added constraint: constraint((T0355)G255.CA, (T0355)S269.CB) [> 4.1611 = 6.9351 < 9.0156] w=0.0197 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)V246.CB) [> 4.0392 = 6.7320 < 8.7515] w=0.0197 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)I118.CB) [> 3.4005 = 5.6676 < 7.3678] w=0.0197 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)N68.CB) [> 3.4527 = 5.7544 < 7.4808] w=0.0197 to align # Constraint # added constraint: constraint((T0355)F116.CB, (T0355)H169.CB) [> 3.8052 = 6.3421 < 8.2447] w=0.0197 to align # Constraint # added constraint: constraint((T0355)A119.CB, (T0355)I199.CB) [> 4.2091 = 7.0152 < 9.1198] w=0.0197 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)A119.CB) [> 4.1284 = 6.8807 < 8.9450] w=0.0197 to align # Constraint # added constraint: constraint((T0355)V237.CB, (T0355)V267.CB) [> 4.2375 = 7.0625 < 9.1813] w=0.0197 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)G122.CA) [> 3.3259 = 5.5432 < 7.2062] w=0.0197 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)I118.CB) [> 3.6619 = 6.1031 < 7.9340] w=0.0197 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)A119.CB) [> 4.5364 = 7.5606 < 9.8288] w=0.0197 to align # Constraint # added constraint: constraint((T0355)A119.CB, (T0355)V198.CB) [> 3.9363 = 6.5605 < 8.5286] w=0.0177 to align # Constraint # added constraint: constraint((T0355)A174.CB, (T0355)S229.CB) [> 4.6221 = 7.7034 < 10.0145] w=0.0138 to align # Constraint # added constraint: constraint((T0355)V237.CB, (T0355)H284.CB) [> 2.7512 = 4.5853 < 5.9609] w=0.0132 to align # Constraint # added constraint: constraint((T0355)A119.CB, (T0355)I247.CB) [> 4.7726 = 7.9544 < 10.3407] w=0.0132 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)A119.CB) [> 4.6452 = 7.7420 < 10.0646] w=0.0132 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)G228.CA) [> 4.6724 = 7.7874 < 10.1236] w=0.0132 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)G245.CA) [> 3.9433 = 6.5721 < 8.5437] w=0.0132 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)L226.CB) [> 4.6069 = 7.6781 < 9.9816] w=0.0132 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)G63.CA) [> 2.9650 = 4.9416 < 6.4241] w=0.0132 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)H62.CB) [> 2.3593 = 3.9322 < 5.1119] w=0.0132 to align # Constraint # added constraint: constraint((T0355)G122.CA, (T0355)S168.CB) [> 4.6724 = 7.7873 < 10.1235] w=0.0132 to align # Constraint # added constraint: constraint((T0355)I4.CB, (T0355)L56.CB) [> 4.5644 = 7.6073 < 9.8895] w=0.0132 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)K253.CB) [> 4.3618 = 7.2697 < 9.4507] w=0.0132 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)F270.CB) [> 3.9308 = 6.5513 < 8.5168] w=0.0132 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)L226.CB) [> 4.2817 = 7.1362 < 9.2770] w=0.0132 to align # Constraint # added constraint: constraint((T0355)H62.CB, (T0355)S244.CB) [> 3.7875 = 6.3126 < 8.2063] w=0.0132 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)I118.CB) [> 3.8260 = 6.3767 < 8.2898] w=0.0132 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)A117.CB) [> 3.5936 = 5.9893 < 7.7861] w=0.0132 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)H169.CB) [> 3.7650 = 6.2749 < 8.1574] w=0.0132 to align # Constraint # added constraint: constraint((T0355)D52.CB, (T0355)V66.CB) [> 3.8258 = 6.3763 < 8.2892] w=0.0132 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)H169.CB) [> 4.3717 = 7.2861 < 9.4720] w=0.0132 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)H169.CB) [> 3.6051 = 6.0084 < 7.8110] w=0.0132 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)S168.CB) [> 3.5512 = 5.9186 < 7.6942] w=0.0132 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)V164.CB) [> 4.4956 = 7.4926 < 9.7404] w=0.0132 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)A166.CB) [> 3.3956 = 5.6594 < 7.3572] w=0.0132 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)V164.CB) [> 4.1600 = 6.9333 < 9.0133] w=0.0132 to align # Constraint # added constraint: constraint((T0355)M50.CB, (T0355)V164.CB) [> 3.7226 = 6.2043 < 8.0656] w=0.0132 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)A166.CB) [> 2.9758 = 4.9596 < 6.4475] w=0.0132 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)V164.CB) [> 3.5116 = 5.8527 < 7.6085] w=0.0132 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)H169.CB) [> 4.2752 = 7.1254 < 9.2630] w=0.0132 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)S168.CB) [> 3.3487 = 5.5811 < 7.2554] w=0.0132 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)A166.CB) [> 3.3549 = 5.5915 < 7.2690] w=0.0132 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)V164.CB) [> 3.3684 = 5.6140 < 7.2983] w=0.0132 to align # Constraint # added constraint: constraint((T0355)I65.CB, (T0355)A166.CB) [> 4.0868 = 6.8113 < 8.8547] w=0.0132 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)H169.CB) [> 4.5043 = 7.5071 < 9.7592] w=0.0132 to align # Constraint # added constraint: constraint((T0355)A117.CB, (T0355)P224.CB) [> 4.3253 = 7.2088 < 9.3714] w=0.0132 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)S229.CB) [> 3.4853 = 5.8088 < 7.5514] w=0.0132 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)G228.CA) [> 4.1243 = 6.8739 < 8.9361] w=0.0132 to align # Constraint # added constraint: constraint((T0355)F116.CB, (T0355)L226.CB) [> 4.6007 = 7.6679 < 9.9683] w=0.0132 to align # Constraint # added constraint: constraint((T0355)A166.CB, (T0355)G228.CA) [> 4.1030 = 6.8383 < 8.8897] w=0.0132 to align # Constraint # added constraint: constraint((T0355)V164.CB, (T0355)L226.CB) [> 3.9844 = 6.6406 < 8.6328] w=0.0132 to align # Constraint # added constraint: constraint((T0355)V164.CB, (T0355)P224.CB) [> 3.2399 = 5.3998 < 7.0198] w=0.0132 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)V164.CB) [> 4.0929 = 6.8215 < 8.8680] w=0.0132 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)N68.CB) [> 3.2784 = 5.4641 < 7.1033] w=0.0132 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)C49.CB) [> 3.7451 = 6.2418 < 8.1143] w=0.0132 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)V66.CB) [> 3.8562 = 6.4271 < 8.3552] w=0.0132 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)E67.CB) [> 4.3061 = 7.1768 < 9.3298] w=0.0132 to align # Constraint # added constraint: constraint((T0355)F116.CB, (T0355)H161.CB) [> 4.2037 = 7.0062 < 9.1081] w=0.0132 to align # Constraint # added constraint: constraint((T0355)A200.CB, (T0355)I247.CB) [> 3.4379 = 5.7299 < 7.4489] w=0.0132 to align # Constraint # added constraint: constraint((T0355)I4.CB, (T0355)Y136.CB) [> 3.7719 = 6.2865 < 8.1724] w=0.0131 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)S244.CB) [> 4.4661 = 7.4435 < 9.6765] w=0.0131 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)I118.CB) [> 3.9868 = 6.6447 < 8.6381] w=0.0131 to align # Constraint # added constraint: constraint((T0355)A117.CB, (T0355)I199.CB) [> 4.6649 = 7.7748 < 10.1072] w=0.0131 to align # Constraint # added constraint: constraint((T0355)A119.CB, (T0355)S168.CB) [> 3.3888 = 5.6480 < 7.3425] w=0.0121 to align # Constraint # added constraint: constraint((T0355)K120.CB, (T0355)V164.CB) [> 3.5752 = 5.9587 < 7.7463] w=0.0121 to align # Constraint # added constraint: constraint((T0355)K120.CB, (T0355)A166.CB) [> 3.9658 = 6.6097 < 8.5926] w=0.0121 to align # Constraint # added constraint: constraint((T0355)I118.CB, (T0355)V164.CB) [> 4.3305 = 7.2174 < 9.3827] w=0.0121 to align # Constraint # added constraint: constraint((T0355)A117.CB, (T0355)S168.CB) [> 4.4277 = 7.3795 < 9.5933] w=0.0121 to align # Constraint # added constraint: constraint((T0355)G122.CA, (T0355)A166.CB) [> 3.1991 = 5.3319 < 6.9314] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I4.CB, (T0355)H169.CB) [> 4.7968 = 7.9946 < 10.3930] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I4.CB, (T0355)S168.CB) [> 3.9438 = 6.5730 < 8.5449] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I4.CB, (T0355)D167.CB) [> 2.6247 = 4.3745 < 5.6868] w=0.0066 to align # Constraint # added constraint: constraint((T0355)A119.CB, (T0355)A166.CB) [> 4.5040 = 7.5067 < 9.7587] w=0.0066 to align # Constraint # added constraint: constraint((T0355)A117.CB, (T0355)A166.CB) [> 3.3382 = 5.5637 < 7.2328] w=0.0066 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)I199.CB) [> 4.6987 = 7.8312 < 10.1805] w=0.0066 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)P224.CB) [> 4.7905 = 7.9842 < 10.3794] w=0.0066 to align # Constraint # added constraint: constraint((T0355)S5.CB, (T0355)C28.CB) [> 3.3716 = 5.6193 < 7.3052] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)I105.CB) [> 3.9853 = 6.6421 < 8.6347] w=0.0066 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)S250.CB) [> 3.6771 = 6.1286 < 7.9671] w=0.0066 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)A249.CB) [> 3.7944 = 6.3241 < 8.2213] w=0.0066 to align # Constraint # added constraint: constraint((T0355)M50.CB, (T0355)I118.CB) [> 4.4062 = 7.3436 < 9.5467] w=0.0066 to align # Constraint # added constraint: constraint((T0355)K253.CB, (T0355)F270.CB) [> 4.6565 = 7.7608 < 10.0890] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)V198.CB) [> 3.5124 = 5.8540 < 7.6102] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)I199.CB) [> 4.3298 = 7.2163 < 9.3812] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)L226.CB) [> 4.7233 = 7.8721 < 10.2337] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)I247.CB) [> 4.2739 = 7.1231 < 9.2601] w=0.0066 to align # Constraint # added constraint: constraint((T0355)G59.CA, (T0355)S269.CB) [> 4.5409 = 7.5682 < 9.8387] w=0.0066 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)A117.CB) [> 3.7253 = 6.2089 < 8.0715] w=0.0066 to align # Constraint # added constraint: constraint((T0355)T3.CB, (T0355)A109.CB) [> 4.3356 = 7.2261 < 9.3939] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I118.CB, (T0355)H169.CB) [> 4.1316 = 6.8861 < 8.9519] w=0.0066 to align # Constraint # added constraint: constraint((T0355)D52.CB, (T0355)G63.CA) [> 4.4613 = 7.4355 < 9.6662] w=0.0066 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)H62.CB) [> 4.0709 = 6.7848 < 8.8202] w=0.0066 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)I247.CB) [> 4.4627 = 7.4379 < 9.6693] w=0.0066 to align # Constraint # added constraint: constraint((T0355)A166.CB, (T0355)P224.CB) [> 4.1494 = 6.9156 < 8.9903] w=0.0066 to align # Constraint # added constraint: constraint((T0355)G63.CA, (T0355)A166.CB) [> 3.7694 = 6.2823 < 8.1670] w=0.0066 to align # Constraint # added constraint: constraint((T0355)M61.CB, (T0355)A166.CB) [> 4.6004 = 7.6673 < 9.9675] w=0.0066 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)H169.CB) [> 4.1484 = 6.9140 < 8.9882] w=0.0066 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)S168.CB) [> 3.6628 = 6.1046 < 7.9360] w=0.0066 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)S250.CB) [> 4.7161 = 7.8601 < 10.2182] w=0.0066 to align # Constraint # added constraint: constraint((T0355)M61.CB, (T0355)A249.CB) [> 3.1553 = 5.2587 < 6.8364] w=0.0066 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)I199.CB) [> 4.6540 = 7.7568 < 10.0838] w=0.0066 to align # Constraint # added constraint: constraint((T0355)C28.CB, (T0355)V198.CB) [> 3.8337 = 6.3895 < 8.3064] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)V198.CB) [> 4.2998 = 7.1664 < 9.3163] w=0.0066 to align # Constraint # added constraint: constraint((T0355)G122.CA, (T0355)I199.CB) [> 3.1213 = 5.2022 < 6.7628] w=0.0066 to align # Constraint # added constraint: constraint((T0355)A200.CB, (T0355)A249.CB) [> 4.6022 = 7.6703 < 9.9714] w=0.0066 to align # Constraint # added constraint: constraint((T0355)M61.CB, (T0355)S168.CB) [> 4.3820 = 7.3034 < 9.4944] w=0.0066 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)S168.CB) [> 4.5979 = 7.6632 < 9.9621] w=0.0066 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)V164.CB) [> 4.4104 = 7.3507 < 9.5559] w=0.0066 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)S168.CB) [> 2.7329 = 4.5549 < 5.9214] w=0.0066 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)A166.CB) [> 3.0540 = 5.0900 < 6.6170] w=0.0066 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)S168.CB) [> 3.2825 = 5.4708 < 7.1121] w=0.0066 to align # Constraint # added constraint: constraint((T0355)H62.CB, (T0355)H169.CB) [> 4.6358 = 7.7264 < 10.0443] w=0.0066 to align # Constraint # added constraint: constraint((T0355)H62.CB, (T0355)S168.CB) [> 4.1846 = 6.9743 < 9.0666] w=0.0066 to align # Constraint # added constraint: constraint((T0355)V164.CB, (T0355)S244.CB) [> 4.7956 = 7.9926 < 10.3904] w=0.0066 to align # Constraint # added constraint: constraint((T0355)A166.CB, (T0355)I247.CB) [> 4.0985 = 6.8309 < 8.8802] w=0.0066 to align # Constraint # added constraint: constraint((T0355)E213.CB, (T0355)S229.CB) [> 4.0528 = 6.7547 < 8.7811] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I105.CB, (T0355)A166.CB) [> 4.2499 = 7.0832 < 9.2082] w=0.0066 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)G228.CA) [> 4.4794 = 7.4657 < 9.7054] w=0.0066 to align # Constraint # added constraint: constraint((T0355)H27.CB, (T0355)M61.CB) [> 4.2528 = 7.0880 < 9.2143] w=0.0066 to align # Constraint # added constraint: constraint((T0355)A166.CB, (T0355)V227.CB) [> 3.8087 = 6.3478 < 8.2521] w=0.0066 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)V227.CB) [> 3.5265 = 5.8775 < 7.6407] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I23.CB, (T0355)I105.CB) [> 4.4511 = 7.4185 < 9.6441] w=0.0066 to align # Constraint # added constraint: constraint((T0355)H169.CB, (T0355)V227.CB) [> 4.5627 = 7.6046 < 9.8859] w=0.0066 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)G245.CA) [> 3.2506 = 5.4178 < 7.0431] w=0.0066 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)S244.CB) [> 3.0684 = 5.1140 < 6.6482] w=0.0066 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)L226.CB) [> 4.4613 = 7.4355 < 9.6662] w=0.0066 to align # Constraint # added constraint: constraint((T0355)A53.CB, (T0355)P224.CB) [> 3.4019 = 5.6698 < 7.3707] w=0.0066 to align # Constraint # added constraint: constraint((T0355)H62.CB, (T0355)V246.CB) [> 4.1704 = 6.9507 < 9.0359] w=0.0066 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)S250.CB) [> 4.5423 = 7.5704 < 9.8416] w=0.0066 to align # Constraint # added constraint: constraint((T0355)E67.CB, (T0355)K253.CB) [> 4.4425 = 7.4042 < 9.6254] w=0.0066 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)F116.CB) [> 4.5224 = 7.5373 < 9.7985] w=0.0066 to align # Constraint # added constraint: constraint((T0355)C49.CB, (T0355)A117.CB) [> 3.4749 = 5.7916 < 7.5290] w=0.0066 to align # Constraint # added constraint: constraint((T0355)M50.CB, (T0355)P224.CB) [> 2.4616 = 4.1027 < 5.3336] w=0.0066 to align # Constraint # added constraint: constraint((T0355)M50.CB, (T0355)S244.CB) [> 4.4710 = 7.4517 < 9.6873] w=0.0066 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)A249.CB) [> 4.2025 = 7.0042 < 9.1055] w=0.0066 to align # Constraint # added constraint: constraint((T0355)N68.CB, (T0355)K253.CB) [> 4.1641 = 6.9401 < 9.0222] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I26.CB, (T0355)H62.CB) [> 3.8631 = 6.4385 < 8.3701] w=0.0066 to align # Constraint # added constraint: constraint((T0355)A200.CB, (T0355)V248.CB) [> 4.6742 = 7.7903 < 10.1274] w=0.0066 to align # Constraint # added constraint: constraint((T0355)A200.CB, (T0355)V246.CB) [> 4.3110 = 7.1851 < 9.3406] w=0.0066 to align # Constraint # added constraint: constraint((T0355)A200.CB, (T0355)P224.CB) [> 4.3606 = 7.2677 < 9.4480] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I199.CB, (T0355)V246.CB) [> 3.2191 = 5.3651 < 6.9747] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I199.CB, (T0355)G245.CA) [> 3.9732 = 6.6219 < 8.6085] w=0.0066 to align # Constraint # added constraint: constraint((T0355)I199.CB, (T0355)S244.CB) [> 4.6558 = 7.7597 < 10.0876] w=0.0066 to align # Constraint # added constraint: constraint((T0355)V198.CB, (T0355)G245.CA) [> 2.9703 = 4.9505 < 6.4356] w=0.0066 to align # Constraint # added constraint: constraint((T0355)M1.CB, (T0355)W132.CB) [> 4.1049 = 6.8416 < 8.8940] w=0.0065 to align # Constraint # added constraint: constraint((T0355)M1.CB, (T0355)I127.CB) [> 4.3873 = 7.3122 < 9.5058] w=0.0065 to align # Constraint # added constraint: constraint((T0355)V66.CB, (T0355)G122.CA) [> 3.0212 = 5.0352 < 6.5458] w=0.0065 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)I199.CB) [> 4.5918 = 7.6530 < 9.9489] w=0.0065 to align # Constraint # added constraint: constraint((T0355)L64.CB, (T0355)K120.CB) [> 4.6672 = 7.7786 < 10.1122] w=0.0065 to align # Constraint # added constraint: constraint((T0355)K120.CB, (T0355)H169.CB) [> 3.1531 = 5.2552 < 6.8318] w=0.0056 to align # Constraint # added constraint: constraint((T0355)K120.CB, (T0355)S168.CB) [> 4.3224 = 7.2041 < 9.3653] w=0.0056 to align # Constraint # added constraint: constraint((T0355)A119.CB, (T0355)V164.CB) [> 2.7949 = 4.6582 < 6.0557] w=0.0056 to align # Constraint # added constraint: constraint((T0355)I118.CB, (T0355)S168.CB) [> 4.4557 = 7.4262 < 9.6540] w=0.0056 to align # Constraint # added constraint: constraint((T0355)I118.CB, (T0355)A166.CB) [> 3.8728 = 6.4546 < 8.3910] w=0.0056 to align # Constraint # added constraint: constraint((T0355)A117.CB, (T0355)V164.CB) [> 4.2866 = 7.1444 < 9.2877] w=0.0056 to align # Constraint # added constraint: constraint((T0355)I199.CB, (T0355)S250.CB) [> 4.6232 = 7.7054 < 10.0170] w=0.0056 to align # Constraint # added constraint: constraint((T0355)I199.CB, (T0355)V248.CB) [> 4.5262 = 7.5437 < 9.8069] w=0.0056 to align # Constraint # added constraint: constraint((T0355)S229.CB, (T0355)G245.CA) [> 3.5777 = 5.9628 < 7.7516] w=0.0056 to align # Constraint # added constraint: constraint((T0355)L226.CB, (T0355)V248.CB) [> 3.8234 = 6.3724 < 8.2841] w=0.0056 to align # Constraint # added constraint: constraint((T0355)P224.CB, (T0355)V246.CB) [> 3.0064 = 5.0106 < 6.5138] w=0.0056 to align # Constraint # added constraint: constraint((T0355)S168.CB, (T0355)P224.CB) [> 3.8527 = 6.4212 < 8.3475] w=0.0056 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0355/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0355/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 Skipped atom 625, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 626, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 627, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 628, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 633, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 634, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 635, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 636, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 641, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 642, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 643, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz Skipped atom 644, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL1.pdb.gz # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 Skipped atom 358, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 360, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 362, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 364, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 494, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 496, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 542, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 544, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 546, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 548, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 630, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 632, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 634, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 636, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 196, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 198, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 200, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 562, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 564, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 566, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 568, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 762, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 764, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 766, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz Skipped atom 768, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL1.pdb.gz # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 262 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 Skipped atom 565, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 566, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 567, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 568, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 573, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 574, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 575, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 576, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 581, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 582, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 583, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 584, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1 # Found a chain break before 176 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 263 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 264 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 262 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 243 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 263 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 263 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 262 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 Skipped atom 545, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 546, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 547, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 548, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 553, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 554, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 555, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 556, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 561, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 562, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 563, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz Skipped atom 564, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL4.pdb.gz # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 263 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 250 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 263 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 164 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0355)G277.CA and (T0355)H284.CA only 0.000 apart, marking (T0355)H284.CA as missing WARNING: atoms too close: (T0355)L278.CA and (T0355)H285.CA only 0.000 apart, marking (T0355)H285.CA as missing WARNING: atoms too close: (T0355)E279.CA and (T0355)H286.CA only 0.000 apart, marking (T0355)H286.CA as missing # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 Skipped atom 565, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 566, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 567, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 568, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 573, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 574, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 575, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 576, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 581, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 582, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 583, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 584, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0355)I95.O and (T0355)V96.N only 0.000 apart, marking (T0355)V96.N as missing WARNING: atoms too close: (T0355)A138.O and (T0355)N139.N only 0.000 apart, marking (T0355)N139.N as missing # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0355)I80.O and (T0355)G81.N only 0.000 apart, marking (T0355)G81.N as missing # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0355)R36.O and (T0355)Y37.N only 0.000 apart, marking (T0355)Y37.N as missing # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 26 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 WARNING: atom 1 has residue number 49 < previous residue 284 in servers/nFOLD_TS3.pdb.gz # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 WARNING: atom 1 has residue number 41 < previous residue 284 in servers/nFOLD_TS4.pdb.gz # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 WARNING: atom 1 has residue number 60 < previous residue 284 in servers/nFOLD_TS5.pdb.gz # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0355)K125.N and (T0355)F126.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)F126.CA only 0.000 apart, marking (T0355)F126.CA as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)F126.CB only 0.000 apart, marking (T0355)F126.CB as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)F126.CG only 0.000 apart, marking (T0355)F126.CG as missing WARNING: atoms too close: (T0355)K125.O and (T0355)F126.O only 0.000 apart, marking (T0355)F126.O as missing WARNING: atoms too close: (T0355)K125.C and (T0355)F126.C only 0.000 apart, marking (T0355)F126.C as missing WARNING: atoms too close: (T0355)F126.N and (T0355)I127.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)I127.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)I127.CA only 0.000 apart, marking (T0355)I127.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)I127.CA only 0.000 apart, marking (T0355)I127.CA as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)I127.CB only 0.000 apart, marking (T0355)I127.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)I127.CB only 0.000 apart, marking (T0355)I127.CB as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)I127.CG1 only 0.000 apart, marking (T0355)I127.CG1 as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)I127.CG1 only 0.000 apart, marking (T0355)I127.CG1 as missing WARNING: atoms too close: (T0355)F126.O and (T0355)I127.O only 0.000 apart, marking (T0355)I127.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)I127.O only 0.000 apart, marking (T0355)I127.O as missing WARNING: atoms too close: (T0355)F126.C and (T0355)I127.C only 0.000 apart, marking (T0355)I127.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)I127.C only 0.000 apart, marking (T0355)I127.C as missing WARNING: atoms too close: (T0355)I127.N and (T0355)R128.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)R128.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)R128.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)R128.CA only 0.000 apart, marking (T0355)R128.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)R128.CA only 0.000 apart, marking (T0355)R128.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)R128.CA only 0.000 apart, marking (T0355)R128.CA as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)R128.CB only 0.000 apart, marking (T0355)R128.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)R128.CB only 0.000 apart, marking (T0355)R128.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)R128.CB only 0.000 apart, marking (T0355)R128.CB as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)R128.CG only 0.000 apart, marking (T0355)R128.CG as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)R128.CG only 0.000 apart, marking (T0355)R128.CG as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)R128.CG only 0.000 apart, marking (T0355)R128.CG as missing WARNING: atoms too close: (T0355)I127.O and (T0355)R128.O only 0.000 apart, marking (T0355)R128.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)R128.O only 0.000 apart, marking (T0355)R128.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)R128.O only 0.000 apart, marking (T0355)R128.O as missing WARNING: atoms too close: (T0355)I127.C and (T0355)R128.C only 0.000 apart, marking (T0355)R128.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)R128.C only 0.000 apart, marking (T0355)R128.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)R128.C only 0.000 apart, marking (T0355)R128.C as missing WARNING: atoms too close: (T0355)R128.N and (T0355)V129.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)V129.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)V129.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)V129.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)V129.CA only 0.000 apart, marking (T0355)V129.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)V129.CA only 0.000 apart, marking (T0355)V129.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)V129.CA only 0.000 apart, marking (T0355)V129.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)V129.CA only 0.000 apart, marking (T0355)V129.CA as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)V129.CB only 0.000 apart, marking (T0355)V129.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)V129.CB only 0.000 apart, marking (T0355)V129.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)V129.CB only 0.000 apart, marking (T0355)V129.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)V129.CB only 0.000 apart, marking (T0355)V129.CB as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)V129.CG1 only 0.000 apart, marking (T0355)V129.CG1 as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)V129.CG1 only 0.000 apart, marking (T0355)V129.CG1 as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)V129.CG1 only 0.000 apart, marking (T0355)V129.CG1 as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)V129.CG1 only 0.000 apart, marking (T0355)V129.CG1 as missing WARNING: atoms too close: (T0355)R128.O and (T0355)V129.O only 0.000 apart, marking (T0355)V129.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)V129.O only 0.000 apart, marking (T0355)V129.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)V129.O only 0.000 apart, marking (T0355)V129.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)V129.O only 0.000 apart, marking (T0355)V129.O as missing WARNING: atoms too close: (T0355)R128.C and (T0355)V129.C only 0.000 apart, marking (T0355)V129.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)V129.C only 0.000 apart, marking (T0355)V129.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)V129.C only 0.000 apart, marking (T0355)V129.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)V129.C only 0.000 apart, marking (T0355)V129.C as missing WARNING: atoms too close: (T0355)V129.N and (T0355)N130.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)N130.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)N130.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)N130.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)N130.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)N130.CA only 0.000 apart, marking (T0355)N130.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)N130.CA only 0.000 apart, marking (T0355)N130.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)N130.CA only 0.000 apart, marking (T0355)N130.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)N130.CA only 0.000 apart, marking (T0355)N130.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)N130.CA only 0.000 apart, marking (T0355)N130.CA as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)N130.CB only 0.000 apart, marking (T0355)N130.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)N130.CB only 0.000 apart, marking (T0355)N130.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)N130.CB only 0.000 apart, marking (T0355)N130.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)N130.CB only 0.000 apart, marking (T0355)N130.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)N130.CB only 0.000 apart, marking (T0355)N130.CB as missing WARNING: atoms too close: (T0355)V129.CG1 and (T0355)N130.CG only 0.000 apart, marking (T0355)N130.CG as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)N130.CG only 0.000 apart, marking (T0355)N130.CG as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)N130.CG only 0.000 apart, marking (T0355)N130.CG as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)N130.CG only 0.000 apart, marking (T0355)N130.CG as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)N130.CG only 0.000 apart, marking (T0355)N130.CG as missing WARNING: atoms too close: (T0355)V129.O and (T0355)N130.O only 0.000 apart, marking (T0355)N130.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)N130.O only 0.000 apart, marking (T0355)N130.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)N130.O only 0.000 apart, marking (T0355)N130.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)N130.O only 0.000 apart, marking (T0355)N130.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)N130.O only 0.000 apart, marking (T0355)N130.O as missing WARNING: atoms too close: (T0355)V129.C and (T0355)N130.C only 0.000 apart, marking (T0355)N130.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)N130.C only 0.000 apart, marking (T0355)N130.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)N130.C only 0.000 apart, marking (T0355)N130.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)N130.C only 0.000 apart, marking (T0355)N130.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)N130.C only 0.000 apart, marking (T0355)N130.C as missing WARNING: atoms too close: (T0355)N130.N and (T0355)Q131.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)Q131.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)Q131.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)Q131.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)Q131.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)Q131.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)Q131.CA only 0.000 apart, marking (T0355)Q131.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)Q131.CA only 0.000 apart, marking (T0355)Q131.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)Q131.CA only 0.000 apart, marking (T0355)Q131.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)Q131.CA only 0.000 apart, marking (T0355)Q131.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)Q131.CA only 0.000 apart, marking (T0355)Q131.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)Q131.CA only 0.000 apart, marking (T0355)Q131.CA as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)Q131.CB only 0.000 apart, marking (T0355)Q131.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)Q131.CB only 0.000 apart, marking (T0355)Q131.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)Q131.CB only 0.000 apart, marking (T0355)Q131.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)Q131.CB only 0.000 apart, marking (T0355)Q131.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)Q131.CB only 0.000 apart, marking (T0355)Q131.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)Q131.CB only 0.000 apart, marking (T0355)Q131.CB as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)Q131.CG only 0.000 apart, marking (T0355)Q131.CG as missing WARNING: atoms too close: (T0355)V129.CG1 and (T0355)Q131.CG only 0.000 apart, marking (T0355)Q131.CG as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)Q131.CG only 0.000 apart, marking (T0355)Q131.CG as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)Q131.CG only 0.000 apart, marking (T0355)Q131.CG as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)Q131.CG only 0.000 apart, marking (T0355)Q131.CG as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)Q131.CG only 0.000 apart, marking (T0355)Q131.CG as missing WARNING: atoms too close: (T0355)N130.O and (T0355)Q131.O only 0.000 apart, marking (T0355)Q131.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)Q131.O only 0.000 apart, marking (T0355)Q131.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)Q131.O only 0.000 apart, marking (T0355)Q131.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)Q131.O only 0.000 apart, marking (T0355)Q131.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)Q131.O only 0.000 apart, marking (T0355)Q131.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)Q131.O only 0.000 apart, marking (T0355)Q131.O as missing WARNING: atoms too close: (T0355)N130.C and (T0355)Q131.C only 0.000 apart, marking (T0355)Q131.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)Q131.C only 0.000 apart, marking (T0355)Q131.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)Q131.C only 0.000 apart, marking (T0355)Q131.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)Q131.C only 0.000 apart, marking (T0355)Q131.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)Q131.C only 0.000 apart, marking (T0355)Q131.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)Q131.C only 0.000 apart, marking (T0355)Q131.C as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)W132.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)W132.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)W132.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)W132.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)W132.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)W132.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)W132.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)W132.CA only 0.000 apart, marking (T0355)W132.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)W132.CA only 0.000 apart, marking (T0355)W132.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)W132.CA only 0.000 apart, marking (T0355)W132.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)W132.CA only 0.000 apart, marking (T0355)W132.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)W132.CA only 0.000 apart, marking (T0355)W132.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)W132.CA only 0.000 apart, marking (T0355)W132.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)W132.CA only 0.000 apart, marking (T0355)W132.CA as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)W132.CB only 0.000 apart, marking (T0355)W132.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)W132.CB only 0.000 apart, marking (T0355)W132.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)W132.CB only 0.000 apart, marking (T0355)W132.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)W132.CB only 0.000 apart, marking (T0355)W132.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)W132.CB only 0.000 apart, marking (T0355)W132.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)W132.CB only 0.000 apart, marking (T0355)W132.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)W132.CB only 0.000 apart, marking (T0355)W132.CB as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)W132.CG only 0.000 apart, marking (T0355)W132.CG as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)W132.CG only 0.000 apart, marking (T0355)W132.CG as missing WARNING: atoms too close: (T0355)V129.CG1 and (T0355)W132.CG only 0.000 apart, marking (T0355)W132.CG as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)W132.CG only 0.000 apart, marking (T0355)W132.CG as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)W132.CG only 0.000 apart, marking (T0355)W132.CG as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)W132.CG only 0.000 apart, marking (T0355)W132.CG as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)W132.CG only 0.000 apart, marking (T0355)W132.CG as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)W132.O only 0.000 apart, marking (T0355)W132.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)W132.O only 0.000 apart, marking (T0355)W132.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)W132.O only 0.000 apart, marking (T0355)W132.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)W132.O only 0.000 apart, marking (T0355)W132.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)W132.O only 0.000 apart, marking (T0355)W132.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)W132.O only 0.000 apart, marking (T0355)W132.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)W132.O only 0.000 apart, marking (T0355)W132.O as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)W132.C only 0.000 apart, marking (T0355)W132.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)W132.C only 0.000 apart, marking (T0355)W132.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)W132.C only 0.000 apart, marking (T0355)W132.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)W132.C only 0.000 apart, marking (T0355)W132.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)W132.C only 0.000 apart, marking (T0355)W132.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)W132.C only 0.000 apart, marking (T0355)W132.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)W132.C only 0.000 apart, marking (T0355)W132.C as missing WARNING: atoms too close: (T0355)W132.N and (T0355)R146.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)R146.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)R146.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)R146.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)R146.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)R146.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)R146.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)R146.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)R146.CA only 0.000 apart, marking (T0355)R146.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)R146.CA only 0.000 apart, marking (T0355)R146.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)R146.CA only 0.000 apart, marking (T0355)R146.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)R146.CA only 0.000 apart, marking (T0355)R146.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)R146.CA only 0.000 apart, marking (T0355)R146.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)R146.CA only 0.000 apart, marking (T0355)R146.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)R146.CA only 0.000 apart, marking (T0355)R146.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)R146.CA only 0.000 apart, marking (T0355)R146.CA as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)R146.CB only 0.000 apart, marking (T0355)R146.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)R146.CB only 0.000 apart, marking (T0355)R146.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)R146.CB only 0.000 apart, marking (T0355)R146.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)R146.CB only 0.000 apart, marking (T0355)R146.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)R146.CB only 0.000 apart, marking (T0355)R146.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)R146.CB only 0.000 apart, marking (T0355)R146.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)R146.CB only 0.000 apart, marking (T0355)R146.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)R146.CB only 0.000 apart, marking (T0355)R146.CB as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)R146.CG only 0.000 apart, marking (T0355)R146.CG as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)R146.CG only 0.000 apart, marking (T0355)R146.CG as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)R146.CG only 0.000 apart, marking (T0355)R146.CG as missing WARNING: atoms too close: (T0355)V129.CG1 and (T0355)R146.CG only 0.000 apart, marking (T0355)R146.CG as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)R146.CG only 0.000 apart, marking (T0355)R146.CG as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)R146.CG only 0.000 apart, marking (T0355)R146.CG as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)R146.CG only 0.000 apart, marking (T0355)R146.CG as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)R146.CG only 0.000 apart, marking (T0355)R146.CG as missing WARNING: atoms too close: (T0355)W132.O and (T0355)R146.O only 0.000 apart, marking (T0355)R146.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)R146.O only 0.000 apart, marking (T0355)R146.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)R146.O only 0.000 apart, marking (T0355)R146.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)R146.O only 0.000 apart, marking (T0355)R146.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)R146.O only 0.000 apart, marking (T0355)R146.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)R146.O only 0.000 apart, marking (T0355)R146.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)R146.O only 0.000 apart, marking (T0355)R146.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)R146.O only 0.000 apart, marking (T0355)R146.O as missing WARNING: atoms too close: (T0355)W132.C and (T0355)R146.C only 0.000 apart, marking (T0355)R146.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)R146.C only 0.000 apart, marking (T0355)R146.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)R146.C only 0.000 apart, marking (T0355)R146.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)R146.C only 0.000 apart, marking (T0355)R146.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)R146.C only 0.000 apart, marking (T0355)R146.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)R146.C only 0.000 apart, marking (T0355)R146.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)R146.C only 0.000 apart, marking (T0355)R146.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)R146.C only 0.000 apart, marking (T0355)R146.C as missing WARNING: atoms too close: (T0355)R146.N and (T0355)A147.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)A147.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)A147.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)A147.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)A147.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)A147.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)A147.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)A147.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)A147.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)A147.CA only 0.000 apart, marking (T0355)A147.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)A147.CA only 0.000 apart, marking (T0355)A147.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)A147.CA only 0.000 apart, marking (T0355)A147.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)A147.CA only 0.000 apart, marking (T0355)A147.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)A147.CA only 0.000 apart, marking (T0355)A147.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)A147.CA only 0.000 apart, marking (T0355)A147.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)A147.CA only 0.000 apart, marking (T0355)A147.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)A147.CA only 0.000 apart, marking (T0355)A147.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)A147.CA only 0.000 apart, marking (T0355)A147.CA as missing WARNING: atoms too close: (T0355)R146.CB and (T0355)A147.CB only 0.000 apart, marking (T0355)A147.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)A147.CB only 0.000 apart, marking (T0355)A147.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)A147.CB only 0.000 apart, marking (T0355)A147.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)A147.CB only 0.000 apart, marking (T0355)A147.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)A147.CB only 0.000 apart, marking (T0355)A147.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)A147.CB only 0.000 apart, marking (T0355)A147.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)A147.CB only 0.000 apart, marking (T0355)A147.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)A147.CB only 0.000 apart, marking (T0355)A147.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)A147.CB only 0.000 apart, marking (T0355)A147.CB as missing WARNING: atoms too close: (T0355)R146.O and (T0355)A147.O only 0.000 apart, marking (T0355)A147.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)A147.O only 0.000 apart, marking (T0355)A147.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)A147.O only 0.000 apart, marking (T0355)A147.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)A147.O only 0.000 apart, marking (T0355)A147.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)A147.O only 0.000 apart, marking (T0355)A147.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)A147.O only 0.000 apart, marking (T0355)A147.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)A147.O only 0.000 apart, marking (T0355)A147.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)A147.O only 0.000 apart, marking (T0355)A147.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)A147.O only 0.000 apart, marking (T0355)A147.O as missing WARNING: atoms too close: (T0355)R146.C and (T0355)A147.C only 0.000 apart, marking (T0355)A147.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)A147.C only 0.000 apart, marking (T0355)A147.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)A147.C only 0.000 apart, marking (T0355)A147.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)A147.C only 0.000 apart, marking (T0355)A147.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)A147.C only 0.000 apart, marking (T0355)A147.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)A147.C only 0.000 apart, marking (T0355)A147.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)A147.C only 0.000 apart, marking (T0355)A147.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)A147.C only 0.000 apart, marking (T0355)A147.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)A147.C only 0.000 apart, marking (T0355)A147.C as missing WARNING: atoms too close: (T0355)A147.N and (T0355)D167.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)D167.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)D167.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)D167.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)D167.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)D167.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)D167.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)D167.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)D167.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)D167.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)D167.CA only 0.000 apart, marking (T0355)D167.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)D167.CA only 0.000 apart, marking (T0355)D167.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)D167.CA only 0.000 apart, marking (T0355)D167.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)D167.CA only 0.000 apart, marking (T0355)D167.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)D167.CA only 0.000 apart, marking (T0355)D167.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)D167.CA only 0.000 apart, marking (T0355)D167.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)D167.CA only 0.000 apart, marking (T0355)D167.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)D167.CA only 0.000 apart, marking (T0355)D167.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)D167.CA only 0.000 apart, marking (T0355)D167.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)D167.CA only 0.000 apart, marking (T0355)D167.CA as missing WARNING: atoms too close: (T0355)A147.CB and (T0355)D167.CB only 0.000 apart, marking (T0355)D167.CB as missing WARNING: atoms too close: (T0355)R146.CB and (T0355)D167.CB only 0.000 apart, marking (T0355)D167.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)D167.CB only 0.000 apart, marking (T0355)D167.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)D167.CB only 0.000 apart, marking (T0355)D167.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)D167.CB only 0.000 apart, marking (T0355)D167.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)D167.CB only 0.000 apart, marking (T0355)D167.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)D167.CB only 0.000 apart, marking (T0355)D167.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)D167.CB only 0.000 apart, marking (T0355)D167.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)D167.CB only 0.000 apart, marking (T0355)D167.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)D167.CB only 0.000 apart, marking (T0355)D167.CB as missing WARNING: atoms too close: (T0355)R146.CG and (T0355)D167.CG only 0.000 apart, marking (T0355)D167.CG as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)D167.CG only 0.000 apart, marking (T0355)D167.CG as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)D167.CG only 0.000 apart, marking (T0355)D167.CG as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)D167.CG only 0.000 apart, marking (T0355)D167.CG as missing WARNING: atoms too close: (T0355)V129.CG1 and (T0355)D167.CG only 0.000 apart, marking (T0355)D167.CG as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)D167.CG only 0.000 apart, marking (T0355)D167.CG as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)D167.CG only 0.000 apart, marking (T0355)D167.CG as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)D167.CG only 0.000 apart, marking (T0355)D167.CG as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)D167.CG only 0.000 apart, marking (T0355)D167.CG as missing WARNING: atoms too close: (T0355)A147.O and (T0355)D167.O only 0.000 apart, marking (T0355)D167.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)D167.O only 0.000 apart, marking (T0355)D167.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)D167.O only 0.000 apart, marking (T0355)D167.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)D167.O only 0.000 apart, marking (T0355)D167.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)D167.O only 0.000 apart, marking (T0355)D167.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)D167.O only 0.000 apart, marking (T0355)D167.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)D167.O only 0.000 apart, marking (T0355)D167.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)D167.O only 0.000 apart, marking (T0355)D167.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)D167.O only 0.000 apart, marking (T0355)D167.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)D167.O only 0.000 apart, marking (T0355)D167.O as missing WARNING: atoms too close: (T0355)A147.C and (T0355)D167.C only 0.000 apart, marking (T0355)D167.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)D167.C only 0.000 apart, marking (T0355)D167.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)D167.C only 0.000 apart, marking (T0355)D167.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)D167.C only 0.000 apart, marking (T0355)D167.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)D167.C only 0.000 apart, marking (T0355)D167.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)D167.C only 0.000 apart, marking (T0355)D167.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)D167.C only 0.000 apart, marking (T0355)D167.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)D167.C only 0.000 apart, marking (T0355)D167.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)D167.C only 0.000 apart, marking (T0355)D167.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)D167.C only 0.000 apart, marking (T0355)D167.C as missing WARNING: atoms too close: (T0355)D167.N and (T0355)S168.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.N and (T0355)S168.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)S168.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)S168.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)S168.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)S168.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)S168.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)S168.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)S168.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)S168.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)S168.N only 0.000 apart, marking (T0355)S168.N as missing WARNING: atoms too close: (T0355)D167.CA and (T0355)S168.CA only 0.000 apart, marking (T0355)S168.CA as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)S168.CA only 0.000 apart, marking (T0355)S168.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)S168.CA only 0.000 apart, marking (T0355)S168.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)S168.CA only 0.000 apart, marking (T0355)S168.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)S168.CA only 0.000 apart, marking (T0355)S168.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)S168.CA only 0.000 apart, marking (T0355)S168.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)S168.CA only 0.000 apart, marking (T0355)S168.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)S168.CA only 0.000 apart, marking (T0355)S168.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)S168.CA only 0.000 apart, marking (T0355)S168.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)S168.CA only 0.000 apart, marking (T0355)S168.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)S168.CA only 0.000 apart, marking (T0355)S168.CA as missing WARNING: atoms too close: (T0355)D167.CB and (T0355)S168.CB only 0.000 apart, marking (T0355)S168.CB as missing WARNING: atoms too close: (T0355)A147.CB and (T0355)S168.CB only 0.000 apart, marking (T0355)S168.CB as missing WARNING: atoms too close: (T0355)R146.CB and (T0355)S168.CB only 0.000 apart, marking (T0355)S168.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)S168.CB only 0.000 apart, marking (T0355)S168.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)S168.CB only 0.000 apart, marking (T0355)S168.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)S168.CB only 0.000 apart, marking (T0355)S168.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)S168.CB only 0.000 apart, marking (T0355)S168.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)S168.CB only 0.000 apart, marking (T0355)S168.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)S168.CB only 0.000 apart, marking (T0355)S168.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)S168.CB only 0.000 apart, marking (T0355)S168.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)S168.CB only 0.000 apart, marking (T0355)S168.CB as missing WARNING: atoms too close: (T0355)D167.O and (T0355)S168.O only 0.000 apart, marking (T0355)S168.O as missing WARNING: atoms too close: (T0355)A147.O and (T0355)S168.O only 0.000 apart, marking (T0355)S168.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)S168.O only 0.000 apart, marking (T0355)S168.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)S168.O only 0.000 apart, marking (T0355)S168.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)S168.O only 0.000 apart, marking (T0355)S168.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)S168.O only 0.000 apart, marking (T0355)S168.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)S168.O only 0.000 apart, marking (T0355)S168.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)S168.O only 0.000 apart, marking (T0355)S168.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)S168.O only 0.000 apart, marking (T0355)S168.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)S168.O only 0.000 apart, marking (T0355)S168.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)S168.O only 0.000 apart, marking (T0355)S168.O as missing WARNING: atoms too close: (T0355)D167.C and (T0355)S168.C only 0.000 apart, marking (T0355)S168.C as missing WARNING: atoms too close: (T0355)A147.C and (T0355)S168.C only 0.000 apart, marking (T0355)S168.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)S168.C only 0.000 apart, marking (T0355)S168.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)S168.C only 0.000 apart, marking (T0355)S168.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)S168.C only 0.000 apart, marking (T0355)S168.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)S168.C only 0.000 apart, marking (T0355)S168.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)S168.C only 0.000 apart, marking (T0355)S168.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)S168.C only 0.000 apart, marking (T0355)S168.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)S168.C only 0.000 apart, marking (T0355)S168.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)S168.C only 0.000 apart, marking (T0355)S168.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)S168.C only 0.000 apart, marking (T0355)S168.C as missing WARNING: atoms too close: (T0355)S168.N and (T0355)H169.N only 0.000 apart, marking (T0355)S168.N as missing WARNING: atoms too close: (T0355)D167.N and (T0355)H169.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.N and (T0355)H169.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)H169.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)H169.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)H169.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)H169.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)H169.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)H169.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)H169.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)H169.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)H169.N only 0.000 apart, marking (T0355)H169.N as missing WARNING: atoms too close: (T0355)S168.CA and (T0355)H169.CA only 0.000 apart, marking (T0355)H169.CA as missing WARNING: atoms too close: (T0355)D167.CA and (T0355)H169.CA only 0.000 apart, marking (T0355)H169.CA as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)H169.CA only 0.000 apart, marking (T0355)H169.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)H169.CA only 0.000 apart, marking (T0355)H169.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)H169.CA only 0.000 apart, marking (T0355)H169.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)H169.CA only 0.000 apart, marking (T0355)H169.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)H169.CA only 0.000 apart, marking (T0355)H169.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)H169.CA only 0.000 apart, marking (T0355)H169.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)H169.CA only 0.000 apart, marking (T0355)H169.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)H169.CA only 0.000 apart, marking (T0355)H169.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)H169.CA only 0.000 apart, marking (T0355)H169.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)H169.CA only 0.000 apart, marking (T0355)H169.CA as missing WARNING: atoms too close: (T0355)S168.CB and (T0355)H169.CB only 0.000 apart, marking (T0355)H169.CB as missing WARNING: atoms too close: (T0355)D167.CB and (T0355)H169.CB only 0.000 apart, marking (T0355)H169.CB as missing WARNING: atoms too close: (T0355)A147.CB and (T0355)H169.CB only 0.000 apart, marking (T0355)H169.CB as missing WARNING: atoms too close: (T0355)R146.CB and (T0355)H169.CB only 0.000 apart, marking (T0355)H169.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)H169.CB only 0.000 apart, marking (T0355)H169.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)H169.CB only 0.000 apart, marking (T0355)H169.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)H169.CB only 0.000 apart, marking (T0355)H169.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)H169.CB only 0.000 apart, marking (T0355)H169.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)H169.CB only 0.000 apart, marking (T0355)H169.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)H169.CB only 0.000 apart, marking (T0355)H169.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)H169.CB only 0.000 apart, marking (T0355)H169.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)H169.CB only 0.000 apart, marking (T0355)H169.CB as missing WARNING: atoms too close: (T0355)D167.CG and (T0355)H169.CG only 0.000 apart, marking (T0355)H169.CG as missing WARNING: atoms too close: (T0355)R146.CG and (T0355)H169.CG only 0.000 apart, marking (T0355)H169.CG as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)H169.CG only 0.000 apart, marking (T0355)H169.CG as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)H169.CG only 0.000 apart, marking (T0355)H169.CG as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)H169.CG only 0.000 apart, marking (T0355)H169.CG as missing WARNING: atoms too close: (T0355)V129.CG1 and (T0355)H169.CG only 0.000 apart, marking (T0355)H169.CG as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)H169.CG only 0.000 apart, marking (T0355)H169.CG as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)H169.CG only 0.000 apart, marking (T0355)H169.CG as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)H169.CG only 0.000 apart, marking (T0355)H169.CG as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)H169.CG only 0.000 apart, marking (T0355)H169.CG as missing WARNING: atoms too close: (T0355)S168.O and (T0355)H169.O only 0.000 apart, marking (T0355)H169.O as missing WARNING: atoms too close: (T0355)D167.O and (T0355)H169.O only 0.000 apart, marking (T0355)H169.O as missing WARNING: atoms too close: (T0355)A147.O and (T0355)H169.O only 0.000 apart, marking (T0355)H169.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)H169.O only 0.000 apart, marking (T0355)H169.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)H169.O only 0.000 apart, marking (T0355)H169.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)H169.O only 0.000 apart, marking (T0355)H169.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)H169.O only 0.000 apart, marking (T0355)H169.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)H169.O only 0.000 apart, marking (T0355)H169.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)H169.O only 0.000 apart, marking (T0355)H169.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)H169.O only 0.000 apart, marking (T0355)H169.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)H169.O only 0.000 apart, marking (T0355)H169.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)H169.O only 0.000 apart, marking (T0355)H169.O as missing WARNING: atoms too close: (T0355)S168.C and (T0355)H169.C only 0.000 apart, marking (T0355)H169.C as missing WARNING: atoms too close: (T0355)D167.C and (T0355)H169.C only 0.000 apart, marking (T0355)H169.C as missing WARNING: atoms too close: (T0355)A147.C and (T0355)H169.C only 0.000 apart, marking (T0355)H169.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)H169.C only 0.000 apart, marking (T0355)H169.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)H169.C only 0.000 apart, marking (T0355)H169.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)H169.C only 0.000 apart, marking (T0355)H169.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)H169.C only 0.000 apart, marking (T0355)H169.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)H169.C only 0.000 apart, marking (T0355)H169.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)H169.C only 0.000 apart, marking (T0355)H169.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)H169.C only 0.000 apart, marking (T0355)H169.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)H169.C only 0.000 apart, marking (T0355)H169.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)H169.C only 0.000 apart, marking (T0355)H169.C as missing WARNING: atoms too close: (T0355)H169.N and (T0355)V170.N only 0.000 apart, marking (T0355)H169.N as missing WARNING: atoms too close: (T0355)S168.N and (T0355)V170.N only 0.000 apart, marking (T0355)S168.N as missing WARNING: atoms too close: (T0355)D167.N and (T0355)V170.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.N and (T0355)V170.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)V170.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)V170.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)V170.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)V170.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)V170.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)V170.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)V170.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)V170.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)V170.N only 0.000 apart, marking (T0355)V170.N as missing WARNING: atoms too close: (T0355)H169.CA and (T0355)V170.CA only 0.000 apart, marking (T0355)V170.CA as missing WARNING: atoms too close: (T0355)S168.CA and (T0355)V170.CA only 0.000 apart, marking (T0355)V170.CA as missing WARNING: atoms too close: (T0355)D167.CA and (T0355)V170.CA only 0.000 apart, marking (T0355)V170.CA as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)V170.CA only 0.000 apart, marking (T0355)V170.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)V170.CA only 0.000 apart, marking (T0355)V170.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)V170.CA only 0.000 apart, marking (T0355)V170.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)V170.CA only 0.000 apart, marking (T0355)V170.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)V170.CA only 0.000 apart, marking (T0355)V170.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)V170.CA only 0.000 apart, marking (T0355)V170.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)V170.CA only 0.000 apart, marking (T0355)V170.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)V170.CA only 0.000 apart, marking (T0355)V170.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)V170.CA only 0.000 apart, marking (T0355)V170.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)V170.CA only 0.000 apart, marking (T0355)V170.CA as missing WARNING: atoms too close: (T0355)H169.CB and (T0355)V170.CB only 0.000 apart, marking (T0355)V170.CB as missing WARNING: atoms too close: (T0355)S168.CB and (T0355)V170.CB only 0.000 apart, marking (T0355)V170.CB as missing WARNING: atoms too close: (T0355)D167.CB and (T0355)V170.CB only 0.000 apart, marking (T0355)V170.CB as missing WARNING: atoms too close: (T0355)A147.CB and (T0355)V170.CB only 0.000 apart, marking (T0355)V170.CB as missing WARNING: atoms too close: (T0355)R146.CB and (T0355)V170.CB only 0.000 apart, marking (T0355)V170.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)V170.CB only 0.000 apart, marking (T0355)V170.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)V170.CB only 0.000 apart, marking (T0355)V170.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)V170.CB only 0.000 apart, marking (T0355)V170.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)V170.CB only 0.000 apart, marking (T0355)V170.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)V170.CB only 0.000 apart, marking (T0355)V170.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)V170.CB only 0.000 apart, marking (T0355)V170.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)V170.CB only 0.000 apart, marking (T0355)V170.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)V170.CB only 0.000 apart, marking (T0355)V170.CB as missing WARNING: atoms too close: (T0355)H169.CG and (T0355)V170.CG1 only 0.000 apart, marking (T0355)V170.CG1 as missing WARNING: atoms too close: (T0355)D167.CG and (T0355)V170.CG1 only 0.000 apart, marking (T0355)V170.CG1 as missing WARNING: atoms too close: (T0355)R146.CG and (T0355)V170.CG1 only 0.000 apart, marking (T0355)V170.CG1 as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)V170.CG1 only 0.000 apart, marking (T0355)V170.CG1 as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)V170.CG1 only 0.000 apart, marking (T0355)V170.CG1 as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)V170.CG1 only 0.000 apart, marking (T0355)V170.CG1 as missing WARNING: atoms too close: (T0355)V129.CG1 and (T0355)V170.CG1 only 0.000 apart, marking (T0355)V170.CG1 as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)V170.CG1 only 0.000 apart, marking (T0355)V170.CG1 as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)V170.CG1 only 0.000 apart, marking (T0355)V170.CG1 as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)V170.CG1 only 0.000 apart, marking (T0355)V170.CG1 as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)V170.CG1 only 0.000 apart, marking (T0355)V170.CG1 as missing WARNING: atoms too close: (T0355)H169.O and (T0355)V170.O only 0.000 apart, marking (T0355)V170.O as missing WARNING: atoms too close: (T0355)S168.O and (T0355)V170.O only 0.000 apart, marking (T0355)V170.O as missing WARNING: atoms too close: (T0355)D167.O and (T0355)V170.O only 0.000 apart, marking (T0355)V170.O as missing WARNING: atoms too close: (T0355)A147.O and (T0355)V170.O only 0.000 apart, marking (T0355)V170.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)V170.O only 0.000 apart, marking (T0355)V170.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)V170.O only 0.000 apart, marking (T0355)V170.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)V170.O only 0.000 apart, marking (T0355)V170.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)V170.O only 0.000 apart, marking (T0355)V170.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)V170.O only 0.000 apart, marking (T0355)V170.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)V170.O only 0.000 apart, marking (T0355)V170.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)V170.O only 0.000 apart, marking (T0355)V170.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)V170.O only 0.000 apart, marking (T0355)V170.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)V170.O only 0.000 apart, marking (T0355)V170.O as missing WARNING: atoms too close: (T0355)H169.C and (T0355)V170.C only 0.000 apart, marking (T0355)V170.C as missing WARNING: atoms too close: (T0355)S168.C and (T0355)V170.C only 0.000 apart, marking (T0355)V170.C as missing WARNING: atoms too close: (T0355)D167.C and (T0355)V170.C only 0.000 apart, marking (T0355)V170.C as missing WARNING: atoms too close: (T0355)A147.C and (T0355)V170.C only 0.000 apart, marking (T0355)V170.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)V170.C only 0.000 apart, marking (T0355)V170.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)V170.C only 0.000 apart, marking (T0355)V170.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)V170.C only 0.000 apart, marking (T0355)V170.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)V170.C only 0.000 apart, marking (T0355)V170.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)V170.C only 0.000 apart, marking (T0355)V170.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)V170.C only 0.000 apart, marking (T0355)V170.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)V170.C only 0.000 apart, marking (T0355)V170.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)V170.C only 0.000 apart, marking (T0355)V170.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)V170.C only 0.000 apart, marking (T0355)V170.C as missing WARNING: atoms too close: (T0355)V170.N and (T0355)K171.N only 0.000 apart, marking (T0355)V170.N as missing WARNING: atoms too close: (T0355)H169.N and (T0355)K171.N only 0.000 apart, marking (T0355)H169.N as missing WARNING: atoms too close: (T0355)S168.N and (T0355)K171.N only 0.000 apart, marking (T0355)S168.N as missing WARNING: atoms too close: (T0355)D167.N and (T0355)K171.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.N and (T0355)K171.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)K171.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)K171.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)K171.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)K171.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)K171.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)K171.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)K171.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)K171.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)K171.N only 0.000 apart, marking (T0355)K171.N as missing WARNING: atoms too close: (T0355)V170.CA and (T0355)K171.CA only 0.000 apart, marking (T0355)K171.CA as missing WARNING: atoms too close: (T0355)H169.CA and (T0355)K171.CA only 0.000 apart, marking (T0355)K171.CA as missing WARNING: atoms too close: (T0355)S168.CA and (T0355)K171.CA only 0.000 apart, marking (T0355)K171.CA as missing WARNING: atoms too close: (T0355)D167.CA and (T0355)K171.CA only 0.000 apart, marking (T0355)K171.CA as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)K171.CA only 0.000 apart, marking (T0355)K171.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)K171.CA only 0.000 apart, marking (T0355)K171.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)K171.CA only 0.000 apart, marking (T0355)K171.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)K171.CA only 0.000 apart, marking (T0355)K171.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)K171.CA only 0.000 apart, marking (T0355)K171.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)K171.CA only 0.000 apart, marking (T0355)K171.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)K171.CA only 0.000 apart, marking (T0355)K171.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)K171.CA only 0.000 apart, marking (T0355)K171.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)K171.CA only 0.000 apart, marking (T0355)K171.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)K171.CA only 0.000 apart, marking (T0355)K171.CA as missing WARNING: atoms too close: (T0355)V170.CB and (T0355)K171.CB only 0.000 apart, marking (T0355)K171.CB as missing WARNING: atoms too close: (T0355)H169.CB and (T0355)K171.CB only 0.000 apart, marking (T0355)K171.CB as missing WARNING: atoms too close: (T0355)S168.CB and (T0355)K171.CB only 0.000 apart, marking (T0355)K171.CB as missing WARNING: atoms too close: (T0355)D167.CB and (T0355)K171.CB only 0.000 apart, marking (T0355)K171.CB as missing WARNING: atoms too close: (T0355)A147.CB and (T0355)K171.CB only 0.000 apart, marking (T0355)K171.CB as missing WARNING: atoms too close: (T0355)R146.CB and (T0355)K171.CB only 0.000 apart, marking (T0355)K171.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)K171.CB only 0.000 apart, marking (T0355)K171.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)K171.CB only 0.000 apart, marking (T0355)K171.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)K171.CB only 0.000 apart, marking (T0355)K171.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)K171.CB only 0.000 apart, marking (T0355)K171.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)K171.CB only 0.000 apart, marking (T0355)K171.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)K171.CB only 0.000 apart, marking (T0355)K171.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)K171.CB only 0.000 apart, marking (T0355)K171.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)K171.CB only 0.000 apart, marking (T0355)K171.CB as missing WARNING: atoms too close: (T0355)V170.CG1 and (T0355)K171.CG only 0.000 apart, marking (T0355)K171.CG as missing WARNING: atoms too close: (T0355)H169.CG and (T0355)K171.CG only 0.000 apart, marking (T0355)K171.CG as missing WARNING: atoms too close: (T0355)D167.CG and (T0355)K171.CG only 0.000 apart, marking (T0355)K171.CG as missing WARNING: atoms too close: (T0355)R146.CG and (T0355)K171.CG only 0.000 apart, marking (T0355)K171.CG as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)K171.CG only 0.000 apart, marking (T0355)K171.CG as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)K171.CG only 0.000 apart, marking (T0355)K171.CG as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)K171.CG only 0.000 apart, marking (T0355)K171.CG as missing WARNING: atoms too close: (T0355)V129.CG1 and (T0355)K171.CG only 0.000 apart, marking (T0355)K171.CG as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)K171.CG only 0.000 apart, marking (T0355)K171.CG as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)K171.CG only 0.000 apart, marking (T0355)K171.CG as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)K171.CG only 0.000 apart, marking (T0355)K171.CG as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)K171.CG only 0.000 apart, marking (T0355)K171.CG as missing WARNING: atoms too close: (T0355)V170.O and (T0355)K171.O only 0.000 apart, marking (T0355)K171.O as missing WARNING: atoms too close: (T0355)H169.O and (T0355)K171.O only 0.000 apart, marking (T0355)K171.O as missing WARNING: atoms too close: (T0355)S168.O and (T0355)K171.O only 0.000 apart, marking (T0355)K171.O as missing WARNING: atoms too close: (T0355)D167.O and (T0355)K171.O only 0.000 apart, marking (T0355)K171.O as missing WARNING: atoms too close: (T0355)A147.O and (T0355)K171.O only 0.000 apart, marking (T0355)K171.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)K171.O only 0.000 apart, marking (T0355)K171.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)K171.O only 0.000 apart, marking (T0355)K171.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)K171.O only 0.000 apart, marking (T0355)K171.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)K171.O only 0.000 apart, marking (T0355)K171.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)K171.O only 0.000 apart, marking (T0355)K171.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)K171.O only 0.000 apart, marking (T0355)K171.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)K171.O only 0.000 apart, marking (T0355)K171.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)K171.O only 0.000 apart, marking (T0355)K171.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)K171.O only 0.000 apart, marking (T0355)K171.O as missing WARNING: atoms too close: (T0355)V170.C and (T0355)K171.C only 0.000 apart, marking (T0355)K171.C as missing WARNING: atoms too close: (T0355)H169.C and (T0355)K171.C only 0.000 apart, marking (T0355)K171.C as missing WARNING: atoms too close: (T0355)S168.C and (T0355)K171.C only 0.000 apart, marking (T0355)K171.C as missing WARNING: atoms too close: (T0355)D167.C and (T0355)K171.C only 0.000 apart, marking (T0355)K171.C as missing WARNING: atoms too close: (T0355)A147.C and (T0355)K171.C only 0.000 apart, marking (T0355)K171.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)K171.C only 0.000 apart, marking (T0355)K171.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)K171.C only 0.000 apart, marking (T0355)K171.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)K171.C only 0.000 apart, marking (T0355)K171.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)K171.C only 0.000 apart, marking (T0355)K171.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)K171.C only 0.000 apart, marking (T0355)K171.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)K171.C only 0.000 apart, marking (T0355)K171.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)K171.C only 0.000 apart, marking (T0355)K171.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)K171.C only 0.000 apart, marking (T0355)K171.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)K171.C only 0.000 apart, marking (T0355)K171.C as missing WARNING: atoms too close: (T0355)K171.N and (T0355)H172.N only 0.000 apart, marking (T0355)K171.N as missing WARNING: atoms too close: (T0355)V170.N and (T0355)H172.N only 0.000 apart, marking (T0355)V170.N as missing WARNING: atoms too close: (T0355)H169.N and (T0355)H172.N only 0.000 apart, marking (T0355)H169.N as missing WARNING: atoms too close: (T0355)S168.N and (T0355)H172.N only 0.000 apart, marking (T0355)S168.N as missing WARNING: atoms too close: (T0355)D167.N and (T0355)H172.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.N and (T0355)H172.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)H172.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)H172.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)H172.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)H172.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)H172.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)H172.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)H172.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)H172.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)H172.N only 0.000 apart, marking (T0355)H172.N as missing WARNING: atoms too close: (T0355)K171.CA and (T0355)H172.CA only 0.000 apart, marking (T0355)H172.CA as missing WARNING: atoms too close: (T0355)V170.CA and (T0355)H172.CA only 0.000 apart, marking (T0355)H172.CA as missing WARNING: atoms too close: (T0355)H169.CA and (T0355)H172.CA only 0.000 apart, marking (T0355)H172.CA as missing WARNING: atoms too close: (T0355)S168.CA and (T0355)H172.CA only 0.000 apart, marking (T0355)H172.CA as missing WARNING: atoms too close: (T0355)D167.CA and (T0355)H172.CA only 0.000 apart, marking (T0355)H172.CA as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)H172.CA only 0.000 apart, marking (T0355)H172.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)H172.CA only 0.000 apart, marking (T0355)H172.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)H172.CA only 0.000 apart, marking (T0355)H172.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)H172.CA only 0.000 apart, marking (T0355)H172.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)H172.CA only 0.000 apart, marking (T0355)H172.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)H172.CA only 0.000 apart, marking (T0355)H172.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)H172.CA only 0.000 apart, marking (T0355)H172.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)H172.CA only 0.000 apart, marking (T0355)H172.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)H172.CA only 0.000 apart, marking (T0355)H172.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)H172.CA only 0.000 apart, marking (T0355)H172.CA as missing WARNING: atoms too close: (T0355)K171.CB and (T0355)H172.CB only 0.000 apart, marking (T0355)H172.CB as missing WARNING: atoms too close: (T0355)V170.CB and (T0355)H172.CB only 0.000 apart, marking (T0355)H172.CB as missing WARNING: atoms too close: (T0355)H169.CB and (T0355)H172.CB only 0.000 apart, marking (T0355)H172.CB as missing WARNING: atoms too close: (T0355)S168.CB and (T0355)H172.CB only 0.000 apart, marking (T0355)H172.CB as missing WARNING: atoms too close: (T0355)D167.CB and (T0355)H172.CB only 0.000 apart, marking (T0355)H172.CB as missing WARNING: atoms too close: (T0355)A147.CB and (T0355)H172.CB only 0.000 apart, marking (T0355)H172.CB as missing WARNING: atoms too close: (T0355)R146.CB and (T0355)H172.CB only 0.000 apart, marking (T0355)H172.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)H172.CB only 0.000 apart, marking (T0355)H172.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)H172.CB only 0.000 apart, marking (T0355)H172.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)H172.CB only 0.000 apart, marking (T0355)H172.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)H172.CB only 0.000 apart, marking (T0355)H172.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)H172.CB only 0.000 apart, marking (T0355)H172.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)H172.CB only 0.000 apart, marking (T0355)H172.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)H172.CB only 0.000 apart, marking (T0355)H172.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)H172.CB only 0.000 apart, marking (T0355)H172.CB as missing WARNING: atoms too close: (T0355)K171.CG and (T0355)H172.CG only 0.000 apart, marking (T0355)H172.CG as missing WARNING: atoms too close: (T0355)V170.CG1 and (T0355)H172.CG only 0.000 apart, marking (T0355)H172.CG as missing WARNING: atoms too close: (T0355)H169.CG and (T0355)H172.CG only 0.000 apart, marking (T0355)H172.CG as missing WARNING: atoms too close: (T0355)D167.CG and (T0355)H172.CG only 0.000 apart, marking (T0355)H172.CG as missing WARNING: atoms too close: (T0355)R146.CG and (T0355)H172.CG only 0.000 apart, marking (T0355)H172.CG as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)H172.CG only 0.000 apart, marking (T0355)H172.CG as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)H172.CG only 0.000 apart, marking (T0355)H172.CG as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)H172.CG only 0.000 apart, marking (T0355)H172.CG as missing WARNING: atoms too close: (T0355)V129.CG1 and (T0355)H172.CG only 0.000 apart, marking (T0355)H172.CG as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)H172.CG only 0.000 apart, marking (T0355)H172.CG as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)H172.CG only 0.000 apart, marking (T0355)H172.CG as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)H172.CG only 0.000 apart, marking (T0355)H172.CG as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)H172.CG only 0.000 apart, marking (T0355)H172.CG as missing WARNING: atoms too close: (T0355)K171.O and (T0355)H172.O only 0.000 apart, marking (T0355)H172.O as missing WARNING: atoms too close: (T0355)V170.O and (T0355)H172.O only 0.000 apart, marking (T0355)H172.O as missing WARNING: atoms too close: (T0355)H169.O and (T0355)H172.O only 0.000 apart, marking (T0355)H172.O as missing WARNING: atoms too close: (T0355)S168.O and (T0355)H172.O only 0.000 apart, marking (T0355)H172.O as missing WARNING: atoms too close: (T0355)D167.O and (T0355)H172.O only 0.000 apart, marking (T0355)H172.O as missing WARNING: atoms too close: (T0355)A147.O and (T0355)H172.O only 0.000 apart, marking (T0355)H172.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)H172.O only 0.000 apart, marking (T0355)H172.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)H172.O only 0.000 apart, marking (T0355)H172.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)H172.O only 0.000 apart, marking (T0355)H172.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)H172.O only 0.000 apart, marking (T0355)H172.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)H172.O only 0.000 apart, marking (T0355)H172.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)H172.O only 0.000 apart, marking (T0355)H172.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)H172.O only 0.000 apart, marking (T0355)H172.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)H172.O only 0.000 apart, marking (T0355)H172.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)H172.O only 0.000 apart, marking (T0355)H172.O as missing WARNING: atoms too close: (T0355)K171.C and (T0355)H172.C only 0.000 apart, marking (T0355)H172.C as missing WARNING: atoms too close: (T0355)V170.C and (T0355)H172.C only 0.000 apart, marking (T0355)H172.C as missing WARNING: atoms too close: (T0355)H169.C and (T0355)H172.C only 0.000 apart, marking (T0355)H172.C as missing WARNING: atoms too close: (T0355)S168.C and (T0355)H172.C only 0.000 apart, marking (T0355)H172.C as missing WARNING: atoms too close: (T0355)D167.C and (T0355)H172.C only 0.000 apart, marking (T0355)H172.C as missing WARNING: atoms too close: (T0355)A147.C and (T0355)H172.C only 0.000 apart, marking (T0355)H172.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)H172.C only 0.000 apart, marking (T0355)H172.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)H172.C only 0.000 apart, marking (T0355)H172.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)H172.C only 0.000 apart, marking (T0355)H172.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)H172.C only 0.000 apart, marking (T0355)H172.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)H172.C only 0.000 apart, marking (T0355)H172.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)H172.C only 0.000 apart, marking (T0355)H172.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)H172.C only 0.000 apart, marking (T0355)H172.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)H172.C only 0.000 apart, marking (T0355)H172.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)H172.C only 0.000 apart, marking (T0355)H172.C as missing WARNING: atoms too close: (T0355)H172.N and (T0355)G173.N only 0.000 apart, marking (T0355)H172.N as missing WARNING: atoms too close: (T0355)K171.N and (T0355)G173.N only 0.000 apart, marking (T0355)K171.N as missing WARNING: atoms too close: (T0355)V170.N and (T0355)G173.N only 0.000 apart, marking (T0355)V170.N as missing WARNING: atoms too close: (T0355)H169.N and (T0355)G173.N only 0.000 apart, marking (T0355)H169.N as missing WARNING: atoms too close: (T0355)S168.N and (T0355)G173.N only 0.000 apart, marking (T0355)S168.N as missing WARNING: atoms too close: (T0355)D167.N and (T0355)G173.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.N and (T0355)G173.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)G173.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)G173.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)G173.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)G173.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)G173.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)G173.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)G173.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)G173.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)G173.N only 0.000 apart, marking (T0355)G173.N as missing WARNING: atoms too close: (T0355)H172.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)K171.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)V170.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)H169.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)S168.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)D167.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)G173.CA only 0.000 apart, marking (T0355)G173.CA as missing WARNING: atoms too close: (T0355)H172.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)K171.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)V170.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)H169.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)S168.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)D167.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)A147.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)G173.O only 0.000 apart, marking (T0355)G173.O as missing WARNING: atoms too close: (T0355)H172.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)K171.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)V170.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)H169.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)S168.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)D167.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)A147.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)G173.C only 0.000 apart, marking (T0355)G173.C as missing WARNING: atoms too close: (T0355)G173.N and (T0355)A174.N only 0.000 apart, marking (T0355)G173.N as missing WARNING: atoms too close: (T0355)H172.N and (T0355)A174.N only 0.000 apart, marking (T0355)H172.N as missing WARNING: atoms too close: (T0355)K171.N and (T0355)A174.N only 0.000 apart, marking (T0355)K171.N as missing WARNING: atoms too close: (T0355)V170.N and (T0355)A174.N only 0.000 apart, marking (T0355)V170.N as missing WARNING: atoms too close: (T0355)H169.N and (T0355)A174.N only 0.000 apart, marking (T0355)H169.N as missing WARNING: atoms too close: (T0355)S168.N and (T0355)A174.N only 0.000 apart, marking (T0355)S168.N as missing WARNING: atoms too close: (T0355)D167.N and (T0355)A174.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.N and (T0355)A174.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)A174.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)A174.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)A174.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)A174.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)A174.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)A174.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)A174.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)A174.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)A174.N only 0.000 apart, marking (T0355)A174.N as missing WARNING: atoms too close: (T0355)G173.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)H172.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)K171.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)V170.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)H169.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)S168.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)D167.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)A174.CA only 0.000 apart, marking (T0355)A174.CA as missing WARNING: atoms too close: (T0355)H172.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)K171.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)V170.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)H169.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)S168.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)D167.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)A147.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)R146.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)A174.CB only 0.000 apart, marking (T0355)A174.CB as missing WARNING: atoms too close: (T0355)G173.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)H172.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)K171.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)V170.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)H169.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)S168.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)D167.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)A147.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)A174.O only 0.000 apart, marking (T0355)A174.O as missing WARNING: atoms too close: (T0355)G173.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)H172.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)K171.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)V170.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)H169.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)S168.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)D167.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)A147.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)A174.C only 0.000 apart, marking (T0355)A174.C as missing WARNING: atoms too close: (T0355)A174.N and (T0355)H175.N only 0.000 apart, marking (T0355)A174.N as missing WARNING: atoms too close: (T0355)G173.N and (T0355)H175.N only 0.000 apart, marking (T0355)G173.N as missing WARNING: atoms too close: (T0355)H172.N and (T0355)H175.N only 0.000 apart, marking (T0355)H172.N as missing WARNING: atoms too close: (T0355)K171.N and (T0355)H175.N only 0.000 apart, marking (T0355)K171.N as missing WARNING: atoms too close: (T0355)V170.N and (T0355)H175.N only 0.000 apart, marking (T0355)V170.N as missing WARNING: atoms too close: (T0355)H169.N and (T0355)H175.N only 0.000 apart, marking (T0355)H169.N as missing WARNING: atoms too close: (T0355)S168.N and (T0355)H175.N only 0.000 apart, marking (T0355)S168.N as missing WARNING: atoms too close: (T0355)D167.N and (T0355)H175.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.N and (T0355)H175.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)H175.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)H175.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)H175.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)H175.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)H175.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)H175.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)H175.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)H175.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)H175.N only 0.000 apart, marking (T0355)H175.N as missing WARNING: atoms too close: (T0355)A174.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)G173.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)H172.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)K171.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)V170.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)H169.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)S168.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)D167.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)H175.CA only 0.000 apart, marking (T0355)H175.CA as missing WARNING: atoms too close: (T0355)A174.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)H172.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)K171.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)V170.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)H169.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)S168.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)D167.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)A147.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)R146.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)H175.CB only 0.000 apart, marking (T0355)H175.CB as missing WARNING: atoms too close: (T0355)H172.CG and (T0355)H175.CG only 0.000 apart, marking (T0355)H175.CG as missing WARNING: atoms too close: (T0355)K171.CG and (T0355)H175.CG only 0.000 apart, marking (T0355)H175.CG as missing WARNING: atoms too close: (T0355)V170.CG1 and (T0355)H175.CG only 0.000 apart, marking (T0355)H175.CG as missing WARNING: atoms too close: (T0355)H169.CG and (T0355)H175.CG only 0.000 apart, marking (T0355)H175.CG as missing WARNING: atoms too close: (T0355)D167.CG and (T0355)H175.CG only 0.000 apart, marking (T0355)H175.CG as missing WARNING: atoms too close: (T0355)R146.CG and (T0355)H175.CG only 0.000 apart, marking (T0355)H175.CG as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)H175.CG only 0.000 apart, marking (T0355)H175.CG as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)H175.CG only 0.000 apart, marking (T0355)H175.CG as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)H175.CG only 0.000 apart, marking (T0355)H175.CG as missing WARNING: atoms too close: (T0355)V129.CG1 and (T0355)H175.CG only 0.000 apart, marking (T0355)H175.CG as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)H175.CG only 0.000 apart, marking (T0355)H175.CG as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)H175.CG only 0.000 apart, marking (T0355)H175.CG as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)H175.CG only 0.000 apart, marking (T0355)H175.CG as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)H175.CG only 0.000 apart, marking (T0355)H175.CG as missing WARNING: atoms too close: (T0355)A174.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)G173.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)H172.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)K171.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)V170.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)H169.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)S168.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)D167.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)A147.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)H175.O only 0.000 apart, marking (T0355)H175.O as missing WARNING: atoms too close: (T0355)A174.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)G173.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)H172.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)K171.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)V170.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)H169.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)S168.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)D167.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)A147.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)H175.C only 0.000 apart, marking (T0355)H175.C as missing WARNING: atoms too close: (T0355)H175.N and (T0355)D196.N only 0.000 apart, marking (T0355)H175.N as missing WARNING: atoms too close: (T0355)A174.N and (T0355)D196.N only 0.000 apart, marking (T0355)A174.N as missing WARNING: atoms too close: (T0355)G173.N and (T0355)D196.N only 0.000 apart, marking (T0355)G173.N as missing WARNING: atoms too close: (T0355)H172.N and (T0355)D196.N only 0.000 apart, marking (T0355)H172.N as missing WARNING: atoms too close: (T0355)K171.N and (T0355)D196.N only 0.000 apart, marking (T0355)K171.N as missing WARNING: atoms too close: (T0355)V170.N and (T0355)D196.N only 0.000 apart, marking (T0355)V170.N as missing WARNING: atoms too close: (T0355)H169.N and (T0355)D196.N only 0.000 apart, marking (T0355)H169.N as missing WARNING: atoms too close: (T0355)S168.N and (T0355)D196.N only 0.000 apart, marking (T0355)S168.N as missing WARNING: atoms too close: (T0355)D167.N and (T0355)D196.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.N and (T0355)D196.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)D196.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)D196.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)D196.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)D196.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)D196.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)D196.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)D196.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)D196.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)D196.N only 0.000 apart, marking (T0355)D196.N as missing WARNING: atoms too close: (T0355)H175.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)A174.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)G173.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)H172.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)K171.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)V170.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)H169.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)S168.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)D167.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)H175.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)A174.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)H172.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)K171.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)V170.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)H169.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)S168.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)D167.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)A147.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)R146.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)H175.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)H172.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)K171.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)V170.CG1 and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)H169.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)D167.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)R146.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)V129.CG1 and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)H175.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)A174.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)G173.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)H172.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)K171.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)V170.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)H169.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)S168.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)D167.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)A147.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)H175.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)A174.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)G173.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)H172.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)K171.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)V170.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)H169.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)S168.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)D167.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)A147.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)D196.N and (T0355)G255.N only 0.000 apart, marking (T0355)D196.N as missing WARNING: atoms too close: (T0355)H175.N and (T0355)G255.N only 0.000 apart, marking (T0355)H175.N as missing WARNING: atoms too close: (T0355)A174.N and (T0355)G255.N only 0.000 apart, marking (T0355)A174.N as missing WARNING: atoms too close: (T0355)G173.N and (T0355)G255.N only 0.000 apart, marking (T0355)G173.N as missing WARNING: atoms too close: (T0355)H172.N and (T0355)G255.N only 0.000 apart, marking (T0355)H172.N as missing WARNING: atoms too close: (T0355)K171.N and (T0355)G255.N only 0.000 apart, marking (T0355)K171.N as missing WARNING: atoms too close: (T0355)V170.N and (T0355)G255.N only 0.000 apart, marking (T0355)V170.N as missing WARNING: atoms too close: (T0355)H169.N and (T0355)G255.N only 0.000 apart, marking (T0355)H169.N as missing WARNING: atoms too close: (T0355)S168.N and (T0355)G255.N only 0.000 apart, marking (T0355)S168.N as missing WARNING: atoms too close: (T0355)D167.N and (T0355)G255.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.N and (T0355)G255.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)G255.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)G255.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)G255.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)G255.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)G255.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)G255.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)G255.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)G255.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)G255.N only 0.000 apart, marking (T0355)G255.N as missing WARNING: atoms too close: (T0355)D196.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)H175.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)A174.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)G173.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)H172.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)K171.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)V170.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)H169.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)S168.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)D167.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)G255.CA only 0.000 apart, marking (T0355)G255.CA as missing WARNING: atoms too close: (T0355)D196.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)H175.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)A174.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)G173.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)H172.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)K171.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)V170.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)H169.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)S168.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)D167.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)A147.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)G255.O only 0.000 apart, marking (T0355)G255.O as missing WARNING: atoms too close: (T0355)D196.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)H175.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)A174.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)G173.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)H172.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)K171.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)V170.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)H169.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)S168.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)D167.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)A147.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)G255.C only 0.000 apart, marking (T0355)G255.C as missing WARNING: atoms too close: (T0355)G255.N and (T0355)G256.N only 0.000 apart, marking (T0355)G255.N as missing WARNING: atoms too close: (T0355)D196.N and (T0355)G256.N only 0.000 apart, marking (T0355)D196.N as missing WARNING: atoms too close: (T0355)H175.N and (T0355)G256.N only 0.000 apart, marking (T0355)H175.N as missing WARNING: atoms too close: (T0355)A174.N and (T0355)G256.N only 0.000 apart, marking (T0355)A174.N as missing WARNING: atoms too close: (T0355)G173.N and (T0355)G256.N only 0.000 apart, marking (T0355)G173.N as missing WARNING: atoms too close: (T0355)H172.N and (T0355)G256.N only 0.000 apart, marking (T0355)H172.N as missing WARNING: atoms too close: (T0355)K171.N and (T0355)G256.N only 0.000 apart, marking (T0355)K171.N as missing WARNING: atoms too close: (T0355)V170.N and (T0355)G256.N only 0.000 apart, marking (T0355)V170.N as missing WARNING: atoms too close: (T0355)H169.N and (T0355)G256.N only 0.000 apart, marking (T0355)H169.N as missing WARNING: atoms too close: (T0355)S168.N and (T0355)G256.N only 0.000 apart, marking (T0355)S168.N as missing WARNING: atoms too close: (T0355)D167.N and (T0355)G256.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.N and (T0355)G256.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)G256.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)G256.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)G256.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)G256.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)G256.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)G256.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)G256.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)G256.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)G256.N only 0.000 apart, marking (T0355)G256.N as missing WARNING: atoms too close: (T0355)G255.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)D196.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)H175.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)A174.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)G173.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)H172.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)K171.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)V170.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)H169.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)S168.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)D167.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)G256.CA only 0.000 apart, marking (T0355)G256.CA as missing WARNING: atoms too close: (T0355)G255.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)D196.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)H175.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)A174.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)G173.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)H172.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)K171.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)V170.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)H169.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)S168.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)D167.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)A147.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)G256.O only 0.000 apart, marking (T0355)G256.O as missing WARNING: atoms too close: (T0355)G255.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)D196.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)H175.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)A174.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)G173.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)H172.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)K171.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)V170.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)H169.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)S168.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)D167.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)A147.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)G256.C only 0.000 apart, marking (T0355)G256.C as missing WARNING: atoms too close: (T0355)G256.N and (T0355)V257.N only 0.000 apart, marking (T0355)G256.N as missing WARNING: atoms too close: (T0355)G255.N and (T0355)V257.N only 0.000 apart, marking (T0355)G255.N as missing WARNING: atoms too close: (T0355)D196.N and (T0355)V257.N only 0.000 apart, marking (T0355)D196.N as missing WARNING: atoms too close: (T0355)H175.N and (T0355)V257.N only 0.000 apart, marking (T0355)H175.N as missing WARNING: atoms too close: (T0355)A174.N and (T0355)V257.N only 0.000 apart, marking (T0355)A174.N as missing WARNING: atoms too close: (T0355)G173.N and (T0355)V257.N only 0.000 apart, marking (T0355)G173.N as missing WARNING: atoms too close: (T0355)H172.N and (T0355)V257.N only 0.000 apart, marking (T0355)H172.N as missing WARNING: atoms too close: (T0355)K171.N and (T0355)V257.N only 0.000 apart, marking (T0355)K171.N as missing WARNING: atoms too close: (T0355)V170.N and (T0355)V257.N only 0.000 apart, marking (T0355)V170.N as missing WARNING: atoms too close: (T0355)H169.N and (T0355)V257.N only 0.000 apart, marking (T0355)H169.N as missing WARNING: atoms too close: (T0355)S168.N and (T0355)V257.N only 0.000 apart, marking (T0355)S168.N as missing WARNING: atoms too close: (T0355)D167.N and (T0355)V257.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.N and (T0355)V257.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)V257.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)V257.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)V257.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)V257.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)V257.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)V257.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)V257.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)V257.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)V257.N only 0.000 apart, marking (T0355)V257.N as missing WARNING: atoms too close: (T0355)G256.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)G255.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)D196.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)H175.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)A174.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)G173.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)H172.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)K171.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)V170.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)H169.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)S168.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)D167.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)V257.CA only 0.000 apart, marking (T0355)V257.CA as missing WARNING: atoms too close: (T0355)D196.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)H175.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)A174.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)H172.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)K171.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)V170.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)H169.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)S168.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)D167.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)A147.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)R146.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)V257.CB only 0.000 apart, marking (T0355)V257.CB as missing WARNING: atoms too close: (T0355)D196.CG and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)H175.CG and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)H172.CG and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)K171.CG and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)V170.CG1 and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)H169.CG and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)D167.CG and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)R146.CG and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)V129.CG1 and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)V257.CG1 only 0.000 apart, marking (T0355)V257.CG1 as missing WARNING: atoms too close: (T0355)G256.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)G255.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)D196.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)H175.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)A174.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)G173.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)H172.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)K171.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)V170.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)H169.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)S168.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)D167.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)A147.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)V257.O only 0.000 apart, marking (T0355)V257.O as missing WARNING: atoms too close: (T0355)G256.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)G255.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)D196.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)H175.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)A174.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)G173.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)H172.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)K171.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)V170.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)H169.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)S168.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)D167.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)A147.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)V257.C only 0.000 apart, marking (T0355)V257.C as missing WARNING: atoms too close: (T0355)V257.N and (T0355)W258.N only 0.000 apart, marking (T0355)V257.N as missing WARNING: atoms too close: (T0355)G256.N and (T0355)W258.N only 0.000 apart, marking (T0355)G256.N as missing WARNING: atoms too close: (T0355)G255.N and (T0355)W258.N only 0.000 apart, marking (T0355)G255.N as missing WARNING: atoms too close: (T0355)D196.N and (T0355)W258.N only 0.000 apart, marking (T0355)D196.N as missing WARNING: atoms too close: (T0355)H175.N and (T0355)W258.N only 0.000 apart, marking (T0355)H175.N as missing WARNING: atoms too close: (T0355)A174.N and (T0355)W258.N only 0.000 apart, marking (T0355)A174.N as missing WARNING: atoms too close: (T0355)G173.N and (T0355)W258.N only 0.000 apart, marking (T0355)G173.N as missing WARNING: atoms too close: (T0355)H172.N and (T0355)W258.N only 0.000 apart, marking (T0355)H172.N as missing WARNING: atoms too close: (T0355)K171.N and (T0355)W258.N only 0.000 apart, marking (T0355)K171.N as missing WARNING: atoms too close: (T0355)V170.N and (T0355)W258.N only 0.000 apart, marking (T0355)V170.N as missing WARNING: atoms too close: (T0355)H169.N and (T0355)W258.N only 0.000 apart, marking (T0355)H169.N as missing WARNING: atoms too close: (T0355)S168.N and (T0355)W258.N only 0.000 apart, marking (T0355)S168.N as missing WARNING: atoms too close: (T0355)D167.N and (T0355)W258.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.N and (T0355)W258.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)W258.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)W258.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)W258.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)W258.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)W258.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)W258.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)W258.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)W258.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)W258.N only 0.000 apart, marking (T0355)W258.N as missing WARNING: atoms too close: (T0355)V257.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)G256.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)G255.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)D196.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)H175.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)A174.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)G173.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)H172.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)K171.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)V170.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)H169.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)S168.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)D167.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)W258.CA only 0.000 apart, marking (T0355)W258.CA as missing WARNING: atoms too close: (T0355)V257.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)D196.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)H175.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)A174.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)H172.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)K171.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)V170.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)H169.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)S168.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)D167.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)A147.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)R146.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)W258.CB only 0.000 apart, marking (T0355)W258.CB as missing WARNING: atoms too close: (T0355)V257.CG1 and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)D196.CG and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)H175.CG and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)H172.CG and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)K171.CG and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)V170.CG1 and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)H169.CG and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)D167.CG and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)R146.CG and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)V129.CG1 and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)W258.CG only 0.000 apart, marking (T0355)W258.CG as missing WARNING: atoms too close: (T0355)V257.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)G256.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)G255.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)D196.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)H175.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)A174.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)G173.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)H172.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)K171.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)V170.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)H169.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)S168.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)D167.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)A147.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)W258.O only 0.000 apart, marking (T0355)W258.O as missing WARNING: atoms too close: (T0355)V257.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)G256.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)G255.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)D196.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)H175.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)A174.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)G173.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)H172.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)K171.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)V170.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)H169.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)S168.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)D167.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)A147.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)W258.C only 0.000 apart, marking (T0355)W258.C as missing WARNING: atoms too close: (T0355)W258.N and (T0355)W259.N only 0.000 apart, marking (T0355)W258.N as missing WARNING: atoms too close: (T0355)V257.N and (T0355)W259.N only 0.000 apart, marking (T0355)V257.N as missing WARNING: atoms too close: (T0355)G256.N and (T0355)W259.N only 0.000 apart, marking (T0355)G256.N as missing WARNING: atoms too close: (T0355)G255.N and (T0355)W259.N only 0.000 apart, marking (T0355)G255.N as missing WARNING: atoms too close: (T0355)D196.N and (T0355)W259.N only 0.000 apart, marking (T0355)D196.N as missing WARNING: atoms too close: (T0355)H175.N and (T0355)W259.N only 0.000 apart, marking (T0355)H175.N as missing WARNING: atoms too close: (T0355)A174.N and (T0355)W259.N only 0.000 apart, marking (T0355)A174.N as missing WARNING: atoms too close: (T0355)G173.N and (T0355)W259.N only 0.000 apart, marking (T0355)G173.N as missing WARNING: atoms too close: (T0355)H172.N and (T0355)W259.N only 0.000 apart, marking (T0355)H172.N as missing WARNING: atoms too close: (T0355)K171.N and (T0355)W259.N only 0.000 apart, marking (T0355)K171.N as missing WARNING: atoms too close: (T0355)V170.N and (T0355)W259.N only 0.000 apart, marking (T0355)V170.N as missing WARNING: atoms too close: (T0355)H169.N and (T0355)W259.N only 0.000 apart, marking (T0355)H169.N as missing WARNING: atoms too close: (T0355)S168.N and (T0355)W259.N only 0.000 apart, marking (T0355)S168.N as missing WARNING: atoms too close: (T0355)D167.N and (T0355)W259.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.N and (T0355)W259.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)W259.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)W259.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)W259.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)W259.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)W259.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)W259.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)W259.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)W259.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)W259.N only 0.000 apart, marking (T0355)W259.N as missing WARNING: atoms too close: (T0355)W258.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)V257.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)G256.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)G255.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)D196.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)H175.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)A174.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)G173.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)H172.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)K171.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)V170.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)H169.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)S168.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)D167.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)W259.CA only 0.000 apart, marking (T0355)W259.CA as missing WARNING: atoms too close: (T0355)W258.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)V257.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)D196.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)H175.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)A174.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)H172.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)K171.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)V170.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)H169.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)S168.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)D167.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)A147.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)R146.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)W259.CB only 0.000 apart, marking (T0355)W259.CB as missing WARNING: atoms too close: (T0355)W258.CG and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)V257.CG1 and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)D196.CG and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)H175.CG and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)H172.CG and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)K171.CG and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)V170.CG1 and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)H169.CG and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)D167.CG and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)R146.CG and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)V129.CG1 and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)W259.CG only 0.000 apart, marking (T0355)W259.CG as missing WARNING: atoms too close: (T0355)W258.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)V257.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)G256.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)G255.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)D196.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)H175.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)A174.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)G173.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)H172.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)K171.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)V170.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)H169.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)S168.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)D167.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)A147.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)W259.O only 0.000 apart, marking (T0355)W259.O as missing WARNING: atoms too close: (T0355)W258.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)V257.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)G256.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)G255.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)D196.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)H175.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)A174.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)G173.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)H172.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)K171.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)V170.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)H169.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)S168.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)D167.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)A147.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)W259.C only 0.000 apart, marking (T0355)W259.C as missing WARNING: atoms too close: (T0355)W259.N and (T0355)N260.N only 0.000 apart, marking (T0355)W259.N as missing WARNING: atoms too close: (T0355)W258.N and (T0355)N260.N only 0.000 apart, marking (T0355)W258.N as missing WARNING: atoms too close: (T0355)V257.N and (T0355)N260.N only 0.000 apart, marking (T0355)V257.N as missing WARNING: atoms too close: (T0355)G256.N and (T0355)N260.N only 0.000 apart, marking (T0355)G256.N as missing WARNING: atoms too close: (T0355)G255.N and (T0355)N260.N only 0.000 apart, marking (T0355)G255.N as missing WARNING: atoms too close: (T0355)D196.N and (T0355)N260.N only 0.000 apart, marking (T0355)D196.N as missing WARNING: atoms too close: (T0355)H175.N and (T0355)N260.N only 0.000 apart, marking (T0355)H175.N as missing WARNING: atoms too close: (T0355)A174.N and (T0355)N260.N only 0.000 apart, marking (T0355)A174.N as missing WARNING: atoms too close: (T0355)G173.N and (T0355)N260.N only 0.000 apart, marking (T0355)G173.N as missing WARNING: atoms too close: (T0355)H172.N and (T0355)N260.N only 0.000 apart, marking (T0355)H172.N as missing WARNING: atoms too close: (T0355)K171.N and (T0355)N260.N only 0.000 apart, marking (T0355)K171.N as missing WARNING: atoms too close: (T0355)V170.N and (T0355)N260.N only 0.000 apart, marking (T0355)V170.N as missing WARNING: atoms too close: (T0355)H169.N and (T0355)N260.N only 0.000 apart, marking (T0355)H169.N as missing WARNING: atoms too close: (T0355)S168.N and (T0355)N260.N only 0.000 apart, marking (T0355)S168.N as missing WARNING: atoms too close: (T0355)D167.N and (T0355)N260.N only 0.000 apart, marking (T0355)D167.N as missing WARNING: atoms too close: (T0355)A147.N and (T0355)N260.N only 0.000 apart, marking (T0355)A147.N as missing WARNING: atoms too close: (T0355)R146.N and (T0355)N260.N only 0.000 apart, marking (T0355)R146.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)N260.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)N260.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)N260.N only 0.000 apart, marking (T0355)N130.N as missing WARNING: atoms too close: (T0355)V129.N and (T0355)N260.N only 0.000 apart, marking (T0355)V129.N as missing WARNING: atoms too close: (T0355)R128.N and (T0355)N260.N only 0.000 apart, marking (T0355)R128.N as missing WARNING: atoms too close: (T0355)I127.N and (T0355)N260.N only 0.000 apart, marking (T0355)I127.N as missing WARNING: atoms too close: (T0355)F126.N and (T0355)N260.N only 0.000 apart, marking (T0355)F126.N as missing WARNING: atoms too close: (T0355)K125.N and (T0355)N260.N only 0.000 apart, marking (T0355)N260.N as missing WARNING: atoms too close: (T0355)W259.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)W258.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)V257.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)G256.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)G255.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)D196.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)H175.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)A174.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)G173.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)H172.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)K171.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)V170.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)H169.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)S168.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)D167.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)A147.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)R146.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)V129.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)R128.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)I127.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)F126.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)K125.CA and (T0355)N260.CA only 0.000 apart, marking (T0355)N260.CA as missing WARNING: atoms too close: (T0355)W259.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)W258.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)V257.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)D196.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)H175.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)A174.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)H172.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)K171.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)V170.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)H169.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)S168.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)D167.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)A147.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)R146.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)V129.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)R128.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)I127.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)F126.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)K125.CB and (T0355)N260.CB only 0.000 apart, marking (T0355)N260.CB as missing WARNING: atoms too close: (T0355)W259.CG and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)W258.CG and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)V257.CG1 and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)D196.CG and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)H175.CG and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)H172.CG and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)K171.CG and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)V170.CG1 and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)H169.CG and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)D167.CG and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)R146.CG and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)V129.CG1 and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)R128.CG and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)I127.CG1 and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)F126.CG and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)K125.CG and (T0355)N260.CG only 0.000 apart, marking (T0355)N260.CG as missing WARNING: atoms too close: (T0355)W259.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)W258.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)V257.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)G256.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)G255.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)D196.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)H175.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)A174.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)G173.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)H172.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)K171.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)V170.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)H169.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)S168.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)D167.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)A147.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)R146.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)V129.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)R128.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)I127.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)F126.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)K125.O and (T0355)N260.O only 0.000 apart, marking (T0355)N260.O as missing WARNING: atoms too close: (T0355)W259.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)W258.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)V257.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)G256.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)G255.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)D196.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)H175.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)A174.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)G173.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)H172.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)K171.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)V170.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)H169.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)S168.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)D167.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)A147.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)R146.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)V129.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)R128.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)I127.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)F126.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing WARNING: atoms too close: (T0355)K125.C and (T0355)N260.C only 0.000 apart, marking (T0355)N260.C as missing # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/panther3_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0355)N130.N and (T0355)Q131.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)Q131.CA only 0.000 apart, marking (T0355)Q131.CA as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)Q131.CB only 0.000 apart, marking (T0355)Q131.CB as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)Q131.CG only 0.000 apart, marking (T0355)Q131.CG as missing WARNING: atoms too close: (T0355)N130.O and (T0355)Q131.O only 0.000 apart, marking (T0355)Q131.O as missing WARNING: atoms too close: (T0355)N130.C and (T0355)Q131.C only 0.000 apart, marking (T0355)Q131.C as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)W132.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)W132.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)W132.CA only 0.000 apart, marking (T0355)W132.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)W132.CA only 0.000 apart, marking (T0355)W132.CA as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)W132.CB only 0.000 apart, marking (T0355)W132.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)W132.CB only 0.000 apart, marking (T0355)W132.CB as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)W132.CG only 0.000 apart, marking (T0355)W132.CG as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)W132.CG only 0.000 apart, marking (T0355)W132.CG as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)W132.O only 0.000 apart, marking (T0355)W132.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)W132.O only 0.000 apart, marking (T0355)W132.O as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)W132.C only 0.000 apart, marking (T0355)W132.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)W132.C only 0.000 apart, marking (T0355)W132.C as missing WARNING: atoms too close: (T0355)W132.N and (T0355)A133.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)A133.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)A133.N only 0.000 apart, marking (T0355)A133.N as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)A133.CA only 0.000 apart, marking (T0355)A133.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)A133.CA only 0.000 apart, marking (T0355)A133.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)A133.CA only 0.000 apart, marking (T0355)A133.CA as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)A133.CB only 0.000 apart, marking (T0355)A133.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)A133.CB only 0.000 apart, marking (T0355)A133.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)A133.CB only 0.000 apart, marking (T0355)A133.CB as missing WARNING: atoms too close: (T0355)W132.O and (T0355)A133.O only 0.000 apart, marking (T0355)A133.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)A133.O only 0.000 apart, marking (T0355)A133.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)A133.O only 0.000 apart, marking (T0355)A133.O as missing WARNING: atoms too close: (T0355)W132.C and (T0355)A133.C only 0.000 apart, marking (T0355)A133.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)A133.C only 0.000 apart, marking (T0355)A133.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)A133.C only 0.000 apart, marking (T0355)A133.C as missing WARNING: atoms too close: (T0355)A133.N and (T0355)N134.N only 0.000 apart, marking (T0355)A133.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)N134.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)N134.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)N134.N only 0.000 apart, marking (T0355)N134.N as missing WARNING: atoms too close: (T0355)A133.CA and (T0355)N134.CA only 0.000 apart, marking (T0355)N134.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)N134.CA only 0.000 apart, marking (T0355)N134.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)N134.CA only 0.000 apart, marking (T0355)N134.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)N134.CA only 0.000 apart, marking (T0355)N134.CA as missing WARNING: atoms too close: (T0355)A133.CB and (T0355)N134.CB only 0.000 apart, marking (T0355)N134.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)N134.CB only 0.000 apart, marking (T0355)N134.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)N134.CB only 0.000 apart, marking (T0355)N134.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)N134.CB only 0.000 apart, marking (T0355)N134.CB as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)N134.CG only 0.000 apart, marking (T0355)N134.CG as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)N134.CG only 0.000 apart, marking (T0355)N134.CG as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)N134.CG only 0.000 apart, marking (T0355)N134.CG as missing WARNING: atoms too close: (T0355)A133.O and (T0355)N134.O only 0.000 apart, marking (T0355)N134.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)N134.O only 0.000 apart, marking (T0355)N134.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)N134.O only 0.000 apart, marking (T0355)N134.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)N134.O only 0.000 apart, marking (T0355)N134.O as missing WARNING: atoms too close: (T0355)A133.C and (T0355)N134.C only 0.000 apart, marking (T0355)N134.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)N134.C only 0.000 apart, marking (T0355)N134.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)N134.C only 0.000 apart, marking (T0355)N134.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)N134.C only 0.000 apart, marking (T0355)N134.C as missing WARNING: atoms too close: (T0355)N134.N and (T0355)A135.N only 0.000 apart, marking (T0355)N134.N as missing WARNING: atoms too close: (T0355)A133.N and (T0355)A135.N only 0.000 apart, marking (T0355)A133.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)A135.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)A135.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)A135.N only 0.000 apart, marking (T0355)A135.N as missing WARNING: atoms too close: (T0355)N134.CA and (T0355)A135.CA only 0.000 apart, marking (T0355)A135.CA as missing WARNING: atoms too close: (T0355)A133.CA and (T0355)A135.CA only 0.000 apart, marking (T0355)A135.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)A135.CA only 0.000 apart, marking (T0355)A135.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)A135.CA only 0.000 apart, marking (T0355)A135.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)A135.CA only 0.000 apart, marking (T0355)A135.CA as missing WARNING: atoms too close: (T0355)N134.CB and (T0355)A135.CB only 0.000 apart, marking (T0355)A135.CB as missing WARNING: atoms too close: (T0355)A133.CB and (T0355)A135.CB only 0.000 apart, marking (T0355)A135.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)A135.CB only 0.000 apart, marking (T0355)A135.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)A135.CB only 0.000 apart, marking (T0355)A135.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)A135.CB only 0.000 apart, marking (T0355)A135.CB as missing WARNING: atoms too close: (T0355)N134.O and (T0355)A135.O only 0.000 apart, marking (T0355)A135.O as missing WARNING: atoms too close: (T0355)A133.O and (T0355)A135.O only 0.000 apart, marking (T0355)A135.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)A135.O only 0.000 apart, marking (T0355)A135.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)A135.O only 0.000 apart, marking (T0355)A135.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)A135.O only 0.000 apart, marking (T0355)A135.O as missing WARNING: atoms too close: (T0355)N134.C and (T0355)A135.C only 0.000 apart, marking (T0355)A135.C as missing WARNING: atoms too close: (T0355)A133.C and (T0355)A135.C only 0.000 apart, marking (T0355)A135.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)A135.C only 0.000 apart, marking (T0355)A135.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)A135.C only 0.000 apart, marking (T0355)A135.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)A135.C only 0.000 apart, marking (T0355)A135.C as missing WARNING: atoms too close: (T0355)A135.N and (T0355)Y136.N only 0.000 apart, marking (T0355)A135.N as missing WARNING: atoms too close: (T0355)N134.N and (T0355)Y136.N only 0.000 apart, marking (T0355)N134.N as missing WARNING: atoms too close: (T0355)A133.N and (T0355)Y136.N only 0.000 apart, marking (T0355)A133.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)Y136.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)Y136.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)Y136.N only 0.000 apart, marking (T0355)Y136.N as missing WARNING: atoms too close: (T0355)A135.CA and (T0355)Y136.CA only 0.000 apart, marking (T0355)Y136.CA as missing WARNING: atoms too close: (T0355)N134.CA and (T0355)Y136.CA only 0.000 apart, marking (T0355)Y136.CA as missing WARNING: atoms too close: (T0355)A133.CA and (T0355)Y136.CA only 0.000 apart, marking (T0355)Y136.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)Y136.CA only 0.000 apart, marking (T0355)Y136.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)Y136.CA only 0.000 apart, marking (T0355)Y136.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)Y136.CA only 0.000 apart, marking (T0355)Y136.CA as missing WARNING: atoms too close: (T0355)A135.CB and (T0355)Y136.CB only 0.000 apart, marking (T0355)Y136.CB as missing WARNING: atoms too close: (T0355)N134.CB and (T0355)Y136.CB only 0.000 apart, marking (T0355)Y136.CB as missing WARNING: atoms too close: (T0355)A133.CB and (T0355)Y136.CB only 0.000 apart, marking (T0355)Y136.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)Y136.CB only 0.000 apart, marking (T0355)Y136.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)Y136.CB only 0.000 apart, marking (T0355)Y136.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)Y136.CB only 0.000 apart, marking (T0355)Y136.CB as missing WARNING: atoms too close: (T0355)A135.O and (T0355)Y136.O only 0.000 apart, marking (T0355)Y136.O as missing WARNING: atoms too close: (T0355)N134.O and (T0355)Y136.O only 0.000 apart, marking (T0355)Y136.O as missing WARNING: atoms too close: (T0355)A133.O and (T0355)Y136.O only 0.000 apart, marking (T0355)Y136.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)Y136.O only 0.000 apart, marking (T0355)Y136.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)Y136.O only 0.000 apart, marking (T0355)Y136.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)Y136.O only 0.000 apart, marking (T0355)Y136.O as missing WARNING: atoms too close: (T0355)A135.C and (T0355)Y136.C only 0.000 apart, marking (T0355)Y136.C as missing WARNING: atoms too close: (T0355)N134.C and (T0355)Y136.C only 0.000 apart, marking (T0355)Y136.C as missing WARNING: atoms too close: (T0355)A133.C and (T0355)Y136.C only 0.000 apart, marking (T0355)Y136.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)Y136.C only 0.000 apart, marking (T0355)Y136.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)Y136.C only 0.000 apart, marking (T0355)Y136.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)Y136.C only 0.000 apart, marking (T0355)Y136.C as missing WARNING: atoms too close: (T0355)Y136.N and (T0355)S182.N only 0.000 apart, marking (T0355)Y136.N as missing WARNING: atoms too close: (T0355)A135.N and (T0355)S182.N only 0.000 apart, marking (T0355)A135.N as missing WARNING: atoms too close: (T0355)N134.N and (T0355)S182.N only 0.000 apart, marking (T0355)N134.N as missing WARNING: atoms too close: (T0355)A133.N and (T0355)S182.N only 0.000 apart, marking (T0355)A133.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)S182.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)S182.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)S182.N only 0.000 apart, marking (T0355)S182.N as missing WARNING: atoms too close: (T0355)Y136.CA and (T0355)S182.CA only 0.000 apart, marking (T0355)S182.CA as missing WARNING: atoms too close: (T0355)A135.CA and (T0355)S182.CA only 0.000 apart, marking (T0355)S182.CA as missing WARNING: atoms too close: (T0355)N134.CA and (T0355)S182.CA only 0.000 apart, marking (T0355)S182.CA as missing WARNING: atoms too close: (T0355)A133.CA and (T0355)S182.CA only 0.000 apart, marking (T0355)S182.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)S182.CA only 0.000 apart, marking (T0355)S182.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)S182.CA only 0.000 apart, marking (T0355)S182.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)S182.CA only 0.000 apart, marking (T0355)S182.CA as missing WARNING: atoms too close: (T0355)Y136.CB and (T0355)S182.CB only 0.000 apart, marking (T0355)S182.CB as missing WARNING: atoms too close: (T0355)A135.CB and (T0355)S182.CB only 0.000 apart, marking (T0355)S182.CB as missing WARNING: atoms too close: (T0355)N134.CB and (T0355)S182.CB only 0.000 apart, marking (T0355)S182.CB as missing WARNING: atoms too close: (T0355)A133.CB and (T0355)S182.CB only 0.000 apart, marking (T0355)S182.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)S182.CB only 0.000 apart, marking (T0355)S182.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)S182.CB only 0.000 apart, marking (T0355)S182.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)S182.CB only 0.000 apart, marking (T0355)S182.CB as missing WARNING: atoms too close: (T0355)Y136.O and (T0355)S182.O only 0.000 apart, marking (T0355)S182.O as missing WARNING: atoms too close: (T0355)A135.O and (T0355)S182.O only 0.000 apart, marking (T0355)S182.O as missing WARNING: atoms too close: (T0355)N134.O and (T0355)S182.O only 0.000 apart, marking (T0355)S182.O as missing WARNING: atoms too close: (T0355)A133.O and (T0355)S182.O only 0.000 apart, marking (T0355)S182.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)S182.O only 0.000 apart, marking (T0355)S182.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)S182.O only 0.000 apart, marking (T0355)S182.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)S182.O only 0.000 apart, marking (T0355)S182.O as missing WARNING: atoms too close: (T0355)Y136.C and (T0355)S182.C only 0.000 apart, marking (T0355)S182.C as missing WARNING: atoms too close: (T0355)A135.C and (T0355)S182.C only 0.000 apart, marking (T0355)S182.C as missing WARNING: atoms too close: (T0355)N134.C and (T0355)S182.C only 0.000 apart, marking (T0355)S182.C as missing WARNING: atoms too close: (T0355)A133.C and (T0355)S182.C only 0.000 apart, marking (T0355)S182.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)S182.C only 0.000 apart, marking (T0355)S182.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)S182.C only 0.000 apart, marking (T0355)S182.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)S182.C only 0.000 apart, marking (T0355)S182.C as missing WARNING: atoms too close: (T0355)S182.N and (T0355)I183.N only 0.000 apart, marking (T0355)S182.N as missing WARNING: atoms too close: (T0355)Y136.N and (T0355)I183.N only 0.000 apart, marking (T0355)Y136.N as missing WARNING: atoms too close: (T0355)A135.N and (T0355)I183.N only 0.000 apart, marking (T0355)A135.N as missing WARNING: atoms too close: (T0355)N134.N and (T0355)I183.N only 0.000 apart, marking (T0355)N134.N as missing WARNING: atoms too close: (T0355)A133.N and (T0355)I183.N only 0.000 apart, marking (T0355)A133.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)I183.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)I183.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)I183.N only 0.000 apart, marking (T0355)I183.N as missing WARNING: atoms too close: (T0355)S182.CA and (T0355)I183.CA only 0.000 apart, marking (T0355)I183.CA as missing WARNING: atoms too close: (T0355)Y136.CA and (T0355)I183.CA only 0.000 apart, marking (T0355)I183.CA as missing WARNING: atoms too close: (T0355)A135.CA and (T0355)I183.CA only 0.000 apart, marking (T0355)I183.CA as missing WARNING: atoms too close: (T0355)N134.CA and (T0355)I183.CA only 0.000 apart, marking (T0355)I183.CA as missing WARNING: atoms too close: (T0355)A133.CA and (T0355)I183.CA only 0.000 apart, marking (T0355)I183.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)I183.CA only 0.000 apart, marking (T0355)I183.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)I183.CA only 0.000 apart, marking (T0355)I183.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)I183.CA only 0.000 apart, marking (T0355)I183.CA as missing WARNING: atoms too close: (T0355)S182.CB and (T0355)I183.CB only 0.000 apart, marking (T0355)I183.CB as missing WARNING: atoms too close: (T0355)Y136.CB and (T0355)I183.CB only 0.000 apart, marking (T0355)I183.CB as missing WARNING: atoms too close: (T0355)A135.CB and (T0355)I183.CB only 0.000 apart, marking (T0355)I183.CB as missing WARNING: atoms too close: (T0355)N134.CB and (T0355)I183.CB only 0.000 apart, marking (T0355)I183.CB as missing WARNING: atoms too close: (T0355)A133.CB and (T0355)I183.CB only 0.000 apart, marking (T0355)I183.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)I183.CB only 0.000 apart, marking (T0355)I183.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)I183.CB only 0.000 apart, marking (T0355)I183.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)I183.CB only 0.000 apart, marking (T0355)I183.CB as missing WARNING: atoms too close: (T0355)N134.CG and (T0355)I183.CG1 only 0.000 apart, marking (T0355)I183.CG1 as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)I183.CG1 only 0.000 apart, marking (T0355)I183.CG1 as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)I183.CG1 only 0.000 apart, marking (T0355)I183.CG1 as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)I183.CG1 only 0.000 apart, marking (T0355)I183.CG1 as missing WARNING: atoms too close: (T0355)Q131.CD and (T0355)I183.CD1 only 0.000 apart, marking (T0355)I183.CD1 as missing WARNING: atoms too close: (T0355)S182.O and (T0355)I183.O only 0.000 apart, marking (T0355)I183.O as missing WARNING: atoms too close: (T0355)Y136.O and (T0355)I183.O only 0.000 apart, marking (T0355)I183.O as missing WARNING: atoms too close: (T0355)A135.O and (T0355)I183.O only 0.000 apart, marking (T0355)I183.O as missing WARNING: atoms too close: (T0355)N134.O and (T0355)I183.O only 0.000 apart, marking (T0355)I183.O as missing WARNING: atoms too close: (T0355)A133.O and (T0355)I183.O only 0.000 apart, marking (T0355)I183.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)I183.O only 0.000 apart, marking (T0355)I183.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)I183.O only 0.000 apart, marking (T0355)I183.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)I183.O only 0.000 apart, marking (T0355)I183.O as missing WARNING: atoms too close: (T0355)S182.C and (T0355)I183.C only 0.000 apart, marking (T0355)I183.C as missing WARNING: atoms too close: (T0355)Y136.C and (T0355)I183.C only 0.000 apart, marking (T0355)I183.C as missing WARNING: atoms too close: (T0355)A135.C and (T0355)I183.C only 0.000 apart, marking (T0355)I183.C as missing WARNING: atoms too close: (T0355)N134.C and (T0355)I183.C only 0.000 apart, marking (T0355)I183.C as missing WARNING: atoms too close: (T0355)A133.C and (T0355)I183.C only 0.000 apart, marking (T0355)I183.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)I183.C only 0.000 apart, marking (T0355)I183.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)I183.C only 0.000 apart, marking (T0355)I183.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)I183.C only 0.000 apart, marking (T0355)I183.C as missing WARNING: atoms too close: (T0355)I183.N and (T0355)D184.N only 0.000 apart, marking (T0355)I183.N as missing WARNING: atoms too close: (T0355)S182.N and (T0355)D184.N only 0.000 apart, marking (T0355)S182.N as missing WARNING: atoms too close: (T0355)Y136.N and (T0355)D184.N only 0.000 apart, marking (T0355)Y136.N as missing WARNING: atoms too close: (T0355)A135.N and (T0355)D184.N only 0.000 apart, marking (T0355)A135.N as missing WARNING: atoms too close: (T0355)N134.N and (T0355)D184.N only 0.000 apart, marking (T0355)N134.N as missing WARNING: atoms too close: (T0355)A133.N and (T0355)D184.N only 0.000 apart, marking (T0355)A133.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)D184.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)D184.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)D184.N only 0.000 apart, marking (T0355)D184.N as missing WARNING: atoms too close: (T0355)I183.CA and (T0355)D184.CA only 0.000 apart, marking (T0355)D184.CA as missing WARNING: atoms too close: (T0355)S182.CA and (T0355)D184.CA only 0.000 apart, marking (T0355)D184.CA as missing WARNING: atoms too close: (T0355)Y136.CA and (T0355)D184.CA only 0.000 apart, marking (T0355)D184.CA as missing WARNING: atoms too close: (T0355)A135.CA and (T0355)D184.CA only 0.000 apart, marking (T0355)D184.CA as missing WARNING: atoms too close: (T0355)N134.CA and (T0355)D184.CA only 0.000 apart, marking (T0355)D184.CA as missing WARNING: atoms too close: (T0355)A133.CA and (T0355)D184.CA only 0.000 apart, marking (T0355)D184.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)D184.CA only 0.000 apart, marking (T0355)D184.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)D184.CA only 0.000 apart, marking (T0355)D184.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)D184.CA only 0.000 apart, marking (T0355)D184.CA as missing WARNING: atoms too close: (T0355)I183.CB and (T0355)D184.CB only 0.000 apart, marking (T0355)D184.CB as missing WARNING: atoms too close: (T0355)S182.CB and (T0355)D184.CB only 0.000 apart, marking (T0355)D184.CB as missing WARNING: atoms too close: (T0355)Y136.CB and (T0355)D184.CB only 0.000 apart, marking (T0355)D184.CB as missing WARNING: atoms too close: (T0355)A135.CB and (T0355)D184.CB only 0.000 apart, marking (T0355)D184.CB as missing WARNING: atoms too close: (T0355)N134.CB and (T0355)D184.CB only 0.000 apart, marking (T0355)D184.CB as missing WARNING: atoms too close: (T0355)A133.CB and (T0355)D184.CB only 0.000 apart, marking (T0355)D184.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)D184.CB only 0.000 apart, marking (T0355)D184.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)D184.CB only 0.000 apart, marking (T0355)D184.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)D184.CB only 0.000 apart, marking (T0355)D184.CB as missing WARNING: atoms too close: (T0355)I183.CG1 and (T0355)D184.CG only 0.000 apart, marking (T0355)D184.CG as missing WARNING: atoms too close: (T0355)N134.CG and (T0355)D184.CG only 0.000 apart, marking (T0355)D184.CG as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)D184.CG only 0.000 apart, marking (T0355)D184.CG as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)D184.CG only 0.000 apart, marking (T0355)D184.CG as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)D184.CG only 0.000 apart, marking (T0355)D184.CG as missing WARNING: atoms too close: (T0355)I183.O and (T0355)D184.O only 0.000 apart, marking (T0355)D184.O as missing WARNING: atoms too close: (T0355)S182.O and (T0355)D184.O only 0.000 apart, marking (T0355)D184.O as missing WARNING: atoms too close: (T0355)Y136.O and (T0355)D184.O only 0.000 apart, marking (T0355)D184.O as missing WARNING: atoms too close: (T0355)A135.O and (T0355)D184.O only 0.000 apart, marking (T0355)D184.O as missing WARNING: atoms too close: (T0355)N134.O and (T0355)D184.O only 0.000 apart, marking (T0355)D184.O as missing WARNING: atoms too close: (T0355)A133.O and (T0355)D184.O only 0.000 apart, marking (T0355)D184.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)D184.O only 0.000 apart, marking (T0355)D184.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)D184.O only 0.000 apart, marking (T0355)D184.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)D184.O only 0.000 apart, marking (T0355)D184.O as missing WARNING: atoms too close: (T0355)I183.C and (T0355)D184.C only 0.000 apart, marking (T0355)D184.C as missing WARNING: atoms too close: (T0355)S182.C and (T0355)D184.C only 0.000 apart, marking (T0355)D184.C as missing WARNING: atoms too close: (T0355)Y136.C and (T0355)D184.C only 0.000 apart, marking (T0355)D184.C as missing WARNING: atoms too close: (T0355)A135.C and (T0355)D184.C only 0.000 apart, marking (T0355)D184.C as missing WARNING: atoms too close: (T0355)N134.C and (T0355)D184.C only 0.000 apart, marking (T0355)D184.C as missing WARNING: atoms too close: (T0355)A133.C and (T0355)D184.C only 0.000 apart, marking (T0355)D184.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)D184.C only 0.000 apart, marking (T0355)D184.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)D184.C only 0.000 apart, marking (T0355)D184.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)D184.C only 0.000 apart, marking (T0355)D184.C as missing WARNING: atoms too close: (T0355)D184.N and (T0355)A195.N only 0.000 apart, marking (T0355)D184.N as missing WARNING: atoms too close: (T0355)I183.N and (T0355)A195.N only 0.000 apart, marking (T0355)I183.N as missing WARNING: atoms too close: (T0355)S182.N and (T0355)A195.N only 0.000 apart, marking (T0355)S182.N as missing WARNING: atoms too close: (T0355)Y136.N and (T0355)A195.N only 0.000 apart, marking (T0355)Y136.N as missing WARNING: atoms too close: (T0355)A135.N and (T0355)A195.N only 0.000 apart, marking (T0355)A135.N as missing WARNING: atoms too close: (T0355)N134.N and (T0355)A195.N only 0.000 apart, marking (T0355)N134.N as missing WARNING: atoms too close: (T0355)A133.N and (T0355)A195.N only 0.000 apart, marking (T0355)A133.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)A195.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)A195.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)A195.N only 0.000 apart, marking (T0355)A195.N as missing WARNING: atoms too close: (T0355)D184.CA and (T0355)A195.CA only 0.000 apart, marking (T0355)A195.CA as missing WARNING: atoms too close: (T0355)I183.CA and (T0355)A195.CA only 0.000 apart, marking (T0355)A195.CA as missing WARNING: atoms too close: (T0355)S182.CA and (T0355)A195.CA only 0.000 apart, marking (T0355)A195.CA as missing WARNING: atoms too close: (T0355)Y136.CA and (T0355)A195.CA only 0.000 apart, marking (T0355)A195.CA as missing WARNING: atoms too close: (T0355)A135.CA and (T0355)A195.CA only 0.000 apart, marking (T0355)A195.CA as missing WARNING: atoms too close: (T0355)N134.CA and (T0355)A195.CA only 0.000 apart, marking (T0355)A195.CA as missing WARNING: atoms too close: (T0355)A133.CA and (T0355)A195.CA only 0.000 apart, marking (T0355)A195.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)A195.CA only 0.000 apart, marking (T0355)A195.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)A195.CA only 0.000 apart, marking (T0355)A195.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)A195.CA only 0.000 apart, marking (T0355)A195.CA as missing WARNING: atoms too close: (T0355)D184.CB and (T0355)A195.CB only 0.000 apart, marking (T0355)A195.CB as missing WARNING: atoms too close: (T0355)I183.CB and (T0355)A195.CB only 0.000 apart, marking (T0355)A195.CB as missing WARNING: atoms too close: (T0355)S182.CB and (T0355)A195.CB only 0.000 apart, marking (T0355)A195.CB as missing WARNING: atoms too close: (T0355)Y136.CB and (T0355)A195.CB only 0.000 apart, marking (T0355)A195.CB as missing WARNING: atoms too close: (T0355)A135.CB and (T0355)A195.CB only 0.000 apart, marking (T0355)A195.CB as missing WARNING: atoms too close: (T0355)N134.CB and (T0355)A195.CB only 0.000 apart, marking (T0355)A195.CB as missing WARNING: atoms too close: (T0355)A133.CB and (T0355)A195.CB only 0.000 apart, marking (T0355)A195.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)A195.CB only 0.000 apart, marking (T0355)A195.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)A195.CB only 0.000 apart, marking (T0355)A195.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)A195.CB only 0.000 apart, marking (T0355)A195.CB as missing WARNING: atoms too close: (T0355)D184.O and (T0355)A195.O only 0.000 apart, marking (T0355)A195.O as missing WARNING: atoms too close: (T0355)I183.O and (T0355)A195.O only 0.000 apart, marking (T0355)A195.O as missing WARNING: atoms too close: (T0355)S182.O and (T0355)A195.O only 0.000 apart, marking (T0355)A195.O as missing WARNING: atoms too close: (T0355)Y136.O and (T0355)A195.O only 0.000 apart, marking (T0355)A195.O as missing WARNING: atoms too close: (T0355)A135.O and (T0355)A195.O only 0.000 apart, marking (T0355)A195.O as missing WARNING: atoms too close: (T0355)N134.O and (T0355)A195.O only 0.000 apart, marking (T0355)A195.O as missing WARNING: atoms too close: (T0355)A133.O and (T0355)A195.O only 0.000 apart, marking (T0355)A195.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)A195.O only 0.000 apart, marking (T0355)A195.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)A195.O only 0.000 apart, marking (T0355)A195.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)A195.O only 0.000 apart, marking (T0355)A195.O as missing WARNING: atoms too close: (T0355)D184.C and (T0355)A195.C only 0.000 apart, marking (T0355)A195.C as missing WARNING: atoms too close: (T0355)I183.C and (T0355)A195.C only 0.000 apart, marking (T0355)A195.C as missing WARNING: atoms too close: (T0355)S182.C and (T0355)A195.C only 0.000 apart, marking (T0355)A195.C as missing WARNING: atoms too close: (T0355)Y136.C and (T0355)A195.C only 0.000 apart, marking (T0355)A195.C as missing WARNING: atoms too close: (T0355)A135.C and (T0355)A195.C only 0.000 apart, marking (T0355)A195.C as missing WARNING: atoms too close: (T0355)N134.C and (T0355)A195.C only 0.000 apart, marking (T0355)A195.C as missing WARNING: atoms too close: (T0355)A133.C and (T0355)A195.C only 0.000 apart, marking (T0355)A195.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)A195.C only 0.000 apart, marking (T0355)A195.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)A195.C only 0.000 apart, marking (T0355)A195.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)A195.C only 0.000 apart, marking (T0355)A195.C as missing WARNING: atoms too close: (T0355)A195.N and (T0355)D196.N only 0.000 apart, marking (T0355)A195.N as missing WARNING: atoms too close: (T0355)D184.N and (T0355)D196.N only 0.000 apart, marking (T0355)D184.N as missing WARNING: atoms too close: (T0355)I183.N and (T0355)D196.N only 0.000 apart, marking (T0355)I183.N as missing WARNING: atoms too close: (T0355)S182.N and (T0355)D196.N only 0.000 apart, marking (T0355)S182.N as missing WARNING: atoms too close: (T0355)Y136.N and (T0355)D196.N only 0.000 apart, marking (T0355)Y136.N as missing WARNING: atoms too close: (T0355)A135.N and (T0355)D196.N only 0.000 apart, marking (T0355)A135.N as missing WARNING: atoms too close: (T0355)N134.N and (T0355)D196.N only 0.000 apart, marking (T0355)N134.N as missing WARNING: atoms too close: (T0355)A133.N and (T0355)D196.N only 0.000 apart, marking (T0355)A133.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)D196.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)D196.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)D196.N only 0.000 apart, marking (T0355)D196.N as missing WARNING: atoms too close: (T0355)A195.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)D184.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)I183.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)S182.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)Y136.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)A135.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)N134.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)A133.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)D196.CA only 0.000 apart, marking (T0355)D196.CA as missing WARNING: atoms too close: (T0355)A195.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)D184.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)I183.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)S182.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)Y136.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)A135.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)N134.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)A133.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)D196.CB only 0.000 apart, marking (T0355)D196.CB as missing WARNING: atoms too close: (T0355)D184.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)I183.CG1 and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)N134.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)D196.CG only 0.000 apart, marking (T0355)D196.CG as missing WARNING: atoms too close: (T0355)A195.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)D184.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)I183.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)S182.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)Y136.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)A135.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)N134.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)A133.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)D196.O only 0.000 apart, marking (T0355)D196.O as missing WARNING: atoms too close: (T0355)A195.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)D184.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)I183.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)S182.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)Y136.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)A135.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)N134.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)A133.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)D196.C only 0.000 apart, marking (T0355)D196.C as missing WARNING: atoms too close: (T0355)D196.N and (T0355)G197.N only 0.000 apart, marking (T0355)D196.N as missing WARNING: atoms too close: (T0355)A195.N and (T0355)G197.N only 0.000 apart, marking (T0355)A195.N as missing WARNING: atoms too close: (T0355)D184.N and (T0355)G197.N only 0.000 apart, marking (T0355)D184.N as missing WARNING: atoms too close: (T0355)I183.N and (T0355)G197.N only 0.000 apart, marking (T0355)I183.N as missing WARNING: atoms too close: (T0355)S182.N and (T0355)G197.N only 0.000 apart, marking (T0355)S182.N as missing WARNING: atoms too close: (T0355)Y136.N and (T0355)G197.N only 0.000 apart, marking (T0355)Y136.N as missing WARNING: atoms too close: (T0355)A135.N and (T0355)G197.N only 0.000 apart, marking (T0355)A135.N as missing WARNING: atoms too close: (T0355)N134.N and (T0355)G197.N only 0.000 apart, marking (T0355)N134.N as missing WARNING: atoms too close: (T0355)A133.N and (T0355)G197.N only 0.000 apart, marking (T0355)A133.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)G197.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)G197.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)G197.N only 0.000 apart, marking (T0355)G197.N as missing WARNING: atoms too close: (T0355)D196.CA and (T0355)G197.CA only 0.000 apart, marking (T0355)G197.CA as missing WARNING: atoms too close: (T0355)A195.CA and (T0355)G197.CA only 0.000 apart, marking (T0355)G197.CA as missing WARNING: atoms too close: (T0355)D184.CA and (T0355)G197.CA only 0.000 apart, marking (T0355)G197.CA as missing WARNING: atoms too close: (T0355)I183.CA and (T0355)G197.CA only 0.000 apart, marking (T0355)G197.CA as missing WARNING: atoms too close: (T0355)S182.CA and (T0355)G197.CA only 0.000 apart, marking (T0355)G197.CA as missing WARNING: atoms too close: (T0355)Y136.CA and (T0355)G197.CA only 0.000 apart, marking (T0355)G197.CA as missing WARNING: atoms too close: (T0355)A135.CA and (T0355)G197.CA only 0.000 apart, marking (T0355)G197.CA as missing WARNING: atoms too close: (T0355)N134.CA and (T0355)G197.CA only 0.000 apart, marking (T0355)G197.CA as missing WARNING: atoms too close: (T0355)A133.CA and (T0355)G197.CA only 0.000 apart, marking (T0355)G197.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)G197.CA only 0.000 apart, marking (T0355)G197.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)G197.CA only 0.000 apart, marking (T0355)G197.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)G197.CA only 0.000 apart, marking (T0355)G197.CA as missing WARNING: atoms too close: (T0355)D196.O and (T0355)G197.O only 0.000 apart, marking (T0355)G197.O as missing WARNING: atoms too close: (T0355)A195.O and (T0355)G197.O only 0.000 apart, marking (T0355)G197.O as missing WARNING: atoms too close: (T0355)D184.O and (T0355)G197.O only 0.000 apart, marking (T0355)G197.O as missing WARNING: atoms too close: (T0355)I183.O and (T0355)G197.O only 0.000 apart, marking (T0355)G197.O as missing WARNING: atoms too close: (T0355)S182.O and (T0355)G197.O only 0.000 apart, marking (T0355)G197.O as missing WARNING: atoms too close: (T0355)Y136.O and (T0355)G197.O only 0.000 apart, marking (T0355)G197.O as missing WARNING: atoms too close: (T0355)A135.O and (T0355)G197.O only 0.000 apart, marking (T0355)G197.O as missing WARNING: atoms too close: (T0355)N134.O and (T0355)G197.O only 0.000 apart, marking (T0355)G197.O as missing WARNING: atoms too close: (T0355)A133.O and (T0355)G197.O only 0.000 apart, marking (T0355)G197.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)G197.O only 0.000 apart, marking (T0355)G197.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)G197.O only 0.000 apart, marking (T0355)G197.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)G197.O only 0.000 apart, marking (T0355)G197.O as missing WARNING: atoms too close: (T0355)D196.C and (T0355)G197.C only 0.000 apart, marking (T0355)G197.C as missing WARNING: atoms too close: (T0355)A195.C and (T0355)G197.C only 0.000 apart, marking (T0355)G197.C as missing WARNING: atoms too close: (T0355)D184.C and (T0355)G197.C only 0.000 apart, marking (T0355)G197.C as missing WARNING: atoms too close: (T0355)I183.C and (T0355)G197.C only 0.000 apart, marking (T0355)G197.C as missing WARNING: atoms too close: (T0355)S182.C and (T0355)G197.C only 0.000 apart, marking (T0355)G197.C as missing WARNING: atoms too close: (T0355)Y136.C and (T0355)G197.C only 0.000 apart, marking (T0355)G197.C as missing WARNING: atoms too close: (T0355)A135.C and (T0355)G197.C only 0.000 apart, marking (T0355)G197.C as missing WARNING: atoms too close: (T0355)N134.C and (T0355)G197.C only 0.000 apart, marking (T0355)G197.C as missing WARNING: atoms too close: (T0355)A133.C and (T0355)G197.C only 0.000 apart, marking (T0355)G197.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)G197.C only 0.000 apart, marking (T0355)G197.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)G197.C only 0.000 apart, marking (T0355)G197.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)G197.C only 0.000 apart, marking (T0355)G197.C as missing WARNING: atoms too close: (T0355)G197.N and (T0355)V198.N only 0.000 apart, marking (T0355)G197.N as missing WARNING: atoms too close: (T0355)D196.N and (T0355)V198.N only 0.000 apart, marking (T0355)D196.N as missing WARNING: atoms too close: (T0355)A195.N and (T0355)V198.N only 0.000 apart, marking (T0355)A195.N as missing WARNING: atoms too close: (T0355)D184.N and (T0355)V198.N only 0.000 apart, marking (T0355)D184.N as missing WARNING: atoms too close: (T0355)I183.N and (T0355)V198.N only 0.000 apart, marking (T0355)I183.N as missing WARNING: atoms too close: (T0355)S182.N and (T0355)V198.N only 0.000 apart, marking (T0355)S182.N as missing WARNING: atoms too close: (T0355)Y136.N and (T0355)V198.N only 0.000 apart, marking (T0355)Y136.N as missing WARNING: atoms too close: (T0355)A135.N and (T0355)V198.N only 0.000 apart, marking (T0355)A135.N as missing WARNING: atoms too close: (T0355)N134.N and (T0355)V198.N only 0.000 apart, marking (T0355)N134.N as missing WARNING: atoms too close: (T0355)A133.N and (T0355)V198.N only 0.000 apart, marking (T0355)A133.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)V198.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)V198.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)V198.N only 0.000 apart, marking (T0355)V198.N as missing WARNING: atoms too close: (T0355)G197.CA and (T0355)V198.CA only 0.000 apart, marking (T0355)V198.CA as missing WARNING: atoms too close: (T0355)D196.CA and (T0355)V198.CA only 0.000 apart, marking (T0355)V198.CA as missing WARNING: atoms too close: (T0355)A195.CA and (T0355)V198.CA only 0.000 apart, marking (T0355)V198.CA as missing WARNING: atoms too close: (T0355)D184.CA and (T0355)V198.CA only 0.000 apart, marking (T0355)V198.CA as missing WARNING: atoms too close: (T0355)I183.CA and (T0355)V198.CA only 0.000 apart, marking (T0355)V198.CA as missing WARNING: atoms too close: (T0355)S182.CA and (T0355)V198.CA only 0.000 apart, marking (T0355)V198.CA as missing WARNING: atoms too close: (T0355)Y136.CA and (T0355)V198.CA only 0.000 apart, marking (T0355)V198.CA as missing WARNING: atoms too close: (T0355)A135.CA and (T0355)V198.CA only 0.000 apart, marking (T0355)V198.CA as missing WARNING: atoms too close: (T0355)N134.CA and (T0355)V198.CA only 0.000 apart, marking (T0355)V198.CA as missing WARNING: atoms too close: (T0355)A133.CA and (T0355)V198.CA only 0.000 apart, marking (T0355)V198.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)V198.CA only 0.000 apart, marking (T0355)V198.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)V198.CA only 0.000 apart, marking (T0355)V198.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)V198.CA only 0.000 apart, marking (T0355)V198.CA as missing WARNING: atoms too close: (T0355)D196.CB and (T0355)V198.CB only 0.000 apart, marking (T0355)V198.CB as missing WARNING: atoms too close: (T0355)A195.CB and (T0355)V198.CB only 0.000 apart, marking (T0355)V198.CB as missing WARNING: atoms too close: (T0355)D184.CB and (T0355)V198.CB only 0.000 apart, marking (T0355)V198.CB as missing WARNING: atoms too close: (T0355)I183.CB and (T0355)V198.CB only 0.000 apart, marking (T0355)V198.CB as missing WARNING: atoms too close: (T0355)S182.CB and (T0355)V198.CB only 0.000 apart, marking (T0355)V198.CB as missing WARNING: atoms too close: (T0355)Y136.CB and (T0355)V198.CB only 0.000 apart, marking (T0355)V198.CB as missing WARNING: atoms too close: (T0355)A135.CB and (T0355)V198.CB only 0.000 apart, marking (T0355)V198.CB as missing WARNING: atoms too close: (T0355)N134.CB and (T0355)V198.CB only 0.000 apart, marking (T0355)V198.CB as missing WARNING: atoms too close: (T0355)A133.CB and (T0355)V198.CB only 0.000 apart, marking (T0355)V198.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)V198.CB only 0.000 apart, marking (T0355)V198.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)V198.CB only 0.000 apart, marking (T0355)V198.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)V198.CB only 0.000 apart, marking (T0355)V198.CB as missing WARNING: atoms too close: (T0355)D196.CG and (T0355)V198.CG1 only 0.000 apart, marking (T0355)V198.CG1 as missing WARNING: atoms too close: (T0355)D184.CG and (T0355)V198.CG1 only 0.000 apart, marking (T0355)V198.CG1 as missing WARNING: atoms too close: (T0355)I183.CG1 and (T0355)V198.CG1 only 0.000 apart, marking (T0355)V198.CG1 as missing WARNING: atoms too close: (T0355)N134.CG and (T0355)V198.CG1 only 0.000 apart, marking (T0355)V198.CG1 as missing WARNING: atoms too close: (T0355)W132.CG and (T0355)V198.CG1 only 0.000 apart, marking (T0355)V198.CG1 as missing WARNING: atoms too close: (T0355)Q131.CG and (T0355)V198.CG1 only 0.000 apart, marking (T0355)V198.CG1 as missing WARNING: atoms too close: (T0355)N130.CG and (T0355)V198.CG1 only 0.000 apart, marking (T0355)V198.CG1 as missing WARNING: atoms too close: (T0355)G197.O and (T0355)V198.O only 0.000 apart, marking (T0355)V198.O as missing WARNING: atoms too close: (T0355)D196.O and (T0355)V198.O only 0.000 apart, marking (T0355)V198.O as missing WARNING: atoms too close: (T0355)A195.O and (T0355)V198.O only 0.000 apart, marking (T0355)V198.O as missing WARNING: atoms too close: (T0355)D184.O and (T0355)V198.O only 0.000 apart, marking (T0355)V198.O as missing WARNING: atoms too close: (T0355)I183.O and (T0355)V198.O only 0.000 apart, marking (T0355)V198.O as missing WARNING: atoms too close: (T0355)S182.O and (T0355)V198.O only 0.000 apart, marking (T0355)V198.O as missing WARNING: atoms too close: (T0355)Y136.O and (T0355)V198.O only 0.000 apart, marking (T0355)V198.O as missing WARNING: atoms too close: (T0355)A135.O and (T0355)V198.O only 0.000 apart, marking (T0355)V198.O as missing WARNING: atoms too close: (T0355)N134.O and (T0355)V198.O only 0.000 apart, marking (T0355)V198.O as missing WARNING: atoms too close: (T0355)A133.O and (T0355)V198.O only 0.000 apart, marking (T0355)V198.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)V198.O only 0.000 apart, marking (T0355)V198.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)V198.O only 0.000 apart, marking (T0355)V198.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)V198.O only 0.000 apart, marking (T0355)V198.O as missing WARNING: atoms too close: (T0355)G197.C and (T0355)V198.C only 0.000 apart, marking (T0355)V198.C as missing WARNING: atoms too close: (T0355)D196.C and (T0355)V198.C only 0.000 apart, marking (T0355)V198.C as missing WARNING: atoms too close: (T0355)A195.C and (T0355)V198.C only 0.000 apart, marking (T0355)V198.C as missing WARNING: atoms too close: (T0355)D184.C and (T0355)V198.C only 0.000 apart, marking (T0355)V198.C as missing WARNING: atoms too close: (T0355)I183.C and (T0355)V198.C only 0.000 apart, marking (T0355)V198.C as missing WARNING: atoms too close: (T0355)S182.C and (T0355)V198.C only 0.000 apart, marking (T0355)V198.C as missing WARNING: atoms too close: (T0355)Y136.C and (T0355)V198.C only 0.000 apart, marking (T0355)V198.C as missing WARNING: atoms too close: (T0355)A135.C and (T0355)V198.C only 0.000 apart, marking (T0355)V198.C as missing WARNING: atoms too close: (T0355)N134.C and (T0355)V198.C only 0.000 apart, marking (T0355)V198.C as missing WARNING: atoms too close: (T0355)A133.C and (T0355)V198.C only 0.000 apart, marking (T0355)V198.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)V198.C only 0.000 apart, marking (T0355)V198.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)V198.C only 0.000 apart, marking (T0355)V198.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)V198.C only 0.000 apart, marking (T0355)V198.C as missing WARNING: atoms too close: (T0355)V198.N and (T0355)G218.N only 0.000 apart, marking (T0355)V198.N as missing WARNING: atoms too close: (T0355)G197.N and (T0355)G218.N only 0.000 apart, marking (T0355)G197.N as missing WARNING: atoms too close: (T0355)D196.N and (T0355)G218.N only 0.000 apart, marking (T0355)D196.N as missing WARNING: atoms too close: (T0355)A195.N and (T0355)G218.N only 0.000 apart, marking (T0355)A195.N as missing WARNING: atoms too close: (T0355)D184.N and (T0355)G218.N only 0.000 apart, marking (T0355)D184.N as missing WARNING: atoms too close: (T0355)I183.N and (T0355)G218.N only 0.000 apart, marking (T0355)I183.N as missing WARNING: atoms too close: (T0355)S182.N and (T0355)G218.N only 0.000 apart, marking (T0355)S182.N as missing WARNING: atoms too close: (T0355)Y136.N and (T0355)G218.N only 0.000 apart, marking (T0355)Y136.N as missing WARNING: atoms too close: (T0355)A135.N and (T0355)G218.N only 0.000 apart, marking (T0355)A135.N as missing WARNING: atoms too close: (T0355)N134.N and (T0355)G218.N only 0.000 apart, marking (T0355)N134.N as missing WARNING: atoms too close: (T0355)A133.N and (T0355)G218.N only 0.000 apart, marking (T0355)A133.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)G218.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)G218.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)G218.N only 0.000 apart, marking (T0355)G218.N as missing WARNING: atoms too close: (T0355)V198.CA and (T0355)G218.CA only 0.000 apart, marking (T0355)G218.CA as missing WARNING: atoms too close: (T0355)G197.CA and (T0355)G218.CA only 0.000 apart, marking (T0355)G218.CA as missing WARNING: atoms too close: (T0355)D196.CA and (T0355)G218.CA only 0.000 apart, marking (T0355)G218.CA as missing WARNING: atoms too close: (T0355)A195.CA and (T0355)G218.CA only 0.000 apart, marking (T0355)G218.CA as missing WARNING: atoms too close: (T0355)D184.CA and (T0355)G218.CA only 0.000 apart, marking (T0355)G218.CA as missing WARNING: atoms too close: (T0355)I183.CA and (T0355)G218.CA only 0.000 apart, marking (T0355)G218.CA as missing WARNING: atoms too close: (T0355)S182.CA and (T0355)G218.CA only 0.000 apart, marking (T0355)G218.CA as missing WARNING: atoms too close: (T0355)Y136.CA and (T0355)G218.CA only 0.000 apart, marking (T0355)G218.CA as missing WARNING: atoms too close: (T0355)A135.CA and (T0355)G218.CA only 0.000 apart, marking (T0355)G218.CA as missing WARNING: atoms too close: (T0355)N134.CA and (T0355)G218.CA only 0.000 apart, marking (T0355)G218.CA as missing WARNING: atoms too close: (T0355)A133.CA and (T0355)G218.CA only 0.000 apart, marking (T0355)G218.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)G218.CA only 0.000 apart, marking (T0355)G218.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)G218.CA only 0.000 apart, marking (T0355)G218.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)G218.CA only 0.000 apart, marking (T0355)G218.CA as missing WARNING: atoms too close: (T0355)V198.O and (T0355)G218.O only 0.000 apart, marking (T0355)G218.O as missing WARNING: atoms too close: (T0355)G197.O and (T0355)G218.O only 0.000 apart, marking (T0355)G218.O as missing WARNING: atoms too close: (T0355)D196.O and (T0355)G218.O only 0.000 apart, marking (T0355)G218.O as missing WARNING: atoms too close: (T0355)A195.O and (T0355)G218.O only 0.000 apart, marking (T0355)G218.O as missing WARNING: atoms too close: (T0355)D184.O and (T0355)G218.O only 0.000 apart, marking (T0355)G218.O as missing WARNING: atoms too close: (T0355)I183.O and (T0355)G218.O only 0.000 apart, marking (T0355)G218.O as missing WARNING: atoms too close: (T0355)S182.O and (T0355)G218.O only 0.000 apart, marking (T0355)G218.O as missing WARNING: atoms too close: (T0355)Y136.O and (T0355)G218.O only 0.000 apart, marking (T0355)G218.O as missing WARNING: atoms too close: (T0355)A135.O and (T0355)G218.O only 0.000 apart, marking (T0355)G218.O as missing WARNING: atoms too close: (T0355)N134.O and (T0355)G218.O only 0.000 apart, marking (T0355)G218.O as missing WARNING: atoms too close: (T0355)A133.O and (T0355)G218.O only 0.000 apart, marking (T0355)G218.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)G218.O only 0.000 apart, marking (T0355)G218.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)G218.O only 0.000 apart, marking (T0355)G218.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)G218.O only 0.000 apart, marking (T0355)G218.O as missing WARNING: atoms too close: (T0355)V198.C and (T0355)G218.C only 0.000 apart, marking (T0355)G218.C as missing WARNING: atoms too close: (T0355)G197.C and (T0355)G218.C only 0.000 apart, marking (T0355)G218.C as missing WARNING: atoms too close: (T0355)D196.C and (T0355)G218.C only 0.000 apart, marking (T0355)G218.C as missing WARNING: atoms too close: (T0355)A195.C and (T0355)G218.C only 0.000 apart, marking (T0355)G218.C as missing WARNING: atoms too close: (T0355)D184.C and (T0355)G218.C only 0.000 apart, marking (T0355)G218.C as missing WARNING: atoms too close: (T0355)I183.C and (T0355)G218.C only 0.000 apart, marking (T0355)G218.C as missing WARNING: atoms too close: (T0355)S182.C and (T0355)G218.C only 0.000 apart, marking (T0355)G218.C as missing WARNING: atoms too close: (T0355)Y136.C and (T0355)G218.C only 0.000 apart, marking (T0355)G218.C as missing WARNING: atoms too close: (T0355)A135.C and (T0355)G218.C only 0.000 apart, marking (T0355)G218.C as missing WARNING: atoms too close: (T0355)N134.C and (T0355)G218.C only 0.000 apart, marking (T0355)G218.C as missing WARNING: atoms too close: (T0355)A133.C and (T0355)G218.C only 0.000 apart, marking (T0355)G218.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)G218.C only 0.000 apart, marking (T0355)G218.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)G218.C only 0.000 apart, marking (T0355)G218.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)G218.C only 0.000 apart, marking (T0355)G218.C as missing WARNING: atoms too close: (T0355)G218.N and (T0355)A219.N only 0.000 apart, marking (T0355)G218.N as missing WARNING: atoms too close: (T0355)V198.N and (T0355)A219.N only 0.000 apart, marking (T0355)V198.N as missing WARNING: atoms too close: (T0355)G197.N and (T0355)A219.N only 0.000 apart, marking (T0355)G197.N as missing WARNING: atoms too close: (T0355)D196.N and (T0355)A219.N only 0.000 apart, marking (T0355)D196.N as missing WARNING: atoms too close: (T0355)A195.N and (T0355)A219.N only 0.000 apart, marking (T0355)A195.N as missing WARNING: atoms too close: (T0355)D184.N and (T0355)A219.N only 0.000 apart, marking (T0355)D184.N as missing WARNING: atoms too close: (T0355)I183.N and (T0355)A219.N only 0.000 apart, marking (T0355)I183.N as missing WARNING: atoms too close: (T0355)S182.N and (T0355)A219.N only 0.000 apart, marking (T0355)S182.N as missing WARNING: atoms too close: (T0355)Y136.N and (T0355)A219.N only 0.000 apart, marking (T0355)Y136.N as missing WARNING: atoms too close: (T0355)A135.N and (T0355)A219.N only 0.000 apart, marking (T0355)A135.N as missing WARNING: atoms too close: (T0355)N134.N and (T0355)A219.N only 0.000 apart, marking (T0355)N134.N as missing WARNING: atoms too close: (T0355)A133.N and (T0355)A219.N only 0.000 apart, marking (T0355)A133.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)A219.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)A219.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)A219.N only 0.000 apart, marking (T0355)A219.N as missing WARNING: atoms too close: (T0355)G218.CA and (T0355)A219.CA only 0.000 apart, marking (T0355)A219.CA as missing WARNING: atoms too close: (T0355)V198.CA and (T0355)A219.CA only 0.000 apart, marking (T0355)A219.CA as missing WARNING: atoms too close: (T0355)G197.CA and (T0355)A219.CA only 0.000 apart, marking (T0355)A219.CA as missing WARNING: atoms too close: (T0355)D196.CA and (T0355)A219.CA only 0.000 apart, marking (T0355)A219.CA as missing WARNING: atoms too close: (T0355)A195.CA and (T0355)A219.CA only 0.000 apart, marking (T0355)A219.CA as missing WARNING: atoms too close: (T0355)D184.CA and (T0355)A219.CA only 0.000 apart, marking (T0355)A219.CA as missing WARNING: atoms too close: (T0355)I183.CA and (T0355)A219.CA only 0.000 apart, marking (T0355)A219.CA as missing WARNING: atoms too close: (T0355)S182.CA and (T0355)A219.CA only 0.000 apart, marking (T0355)A219.CA as missing WARNING: atoms too close: (T0355)Y136.CA and (T0355)A219.CA only 0.000 apart, marking (T0355)A219.CA as missing WARNING: atoms too close: (T0355)A135.CA and (T0355)A219.CA only 0.000 apart, marking (T0355)A219.CA as missing WARNING: atoms too close: (T0355)N134.CA and (T0355)A219.CA only 0.000 apart, marking (T0355)A219.CA as missing WARNING: atoms too close: (T0355)A133.CA and (T0355)A219.CA only 0.000 apart, marking (T0355)A219.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)A219.CA only 0.000 apart, marking (T0355)A219.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)A219.CA only 0.000 apart, marking (T0355)A219.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)A219.CA only 0.000 apart, marking (T0355)A219.CA as missing WARNING: atoms too close: (T0355)V198.CB and (T0355)A219.CB only 0.000 apart, marking (T0355)A219.CB as missing WARNING: atoms too close: (T0355)D196.CB and (T0355)A219.CB only 0.000 apart, marking (T0355)A219.CB as missing WARNING: atoms too close: (T0355)A195.CB and (T0355)A219.CB only 0.000 apart, marking (T0355)A219.CB as missing WARNING: atoms too close: (T0355)D184.CB and (T0355)A219.CB only 0.000 apart, marking (T0355)A219.CB as missing WARNING: atoms too close: (T0355)I183.CB and (T0355)A219.CB only 0.000 apart, marking (T0355)A219.CB as missing WARNING: atoms too close: (T0355)S182.CB and (T0355)A219.CB only 0.000 apart, marking (T0355)A219.CB as missing WARNING: atoms too close: (T0355)Y136.CB and (T0355)A219.CB only 0.000 apart, marking (T0355)A219.CB as missing WARNING: atoms too close: (T0355)A135.CB and (T0355)A219.CB only 0.000 apart, marking (T0355)A219.CB as missing WARNING: atoms too close: (T0355)N134.CB and (T0355)A219.CB only 0.000 apart, marking (T0355)A219.CB as missing WARNING: atoms too close: (T0355)A133.CB and (T0355)A219.CB only 0.000 apart, marking (T0355)A219.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)A219.CB only 0.000 apart, marking (T0355)A219.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)A219.CB only 0.000 apart, marking (T0355)A219.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)A219.CB only 0.000 apart, marking (T0355)A219.CB as missing WARNING: atoms too close: (T0355)G218.O and (T0355)A219.O only 0.000 apart, marking (T0355)A219.O as missing WARNING: atoms too close: (T0355)V198.O and (T0355)A219.O only 0.000 apart, marking (T0355)A219.O as missing WARNING: atoms too close: (T0355)G197.O and (T0355)A219.O only 0.000 apart, marking (T0355)A219.O as missing WARNING: atoms too close: (T0355)D196.O and (T0355)A219.O only 0.000 apart, marking (T0355)A219.O as missing WARNING: atoms too close: (T0355)A195.O and (T0355)A219.O only 0.000 apart, marking (T0355)A219.O as missing WARNING: atoms too close: (T0355)D184.O and (T0355)A219.O only 0.000 apart, marking (T0355)A219.O as missing WARNING: atoms too close: (T0355)I183.O and (T0355)A219.O only 0.000 apart, marking (T0355)A219.O as missing WARNING: atoms too close: (T0355)S182.O and (T0355)A219.O only 0.000 apart, marking (T0355)A219.O as missing WARNING: atoms too close: (T0355)Y136.O and (T0355)A219.O only 0.000 apart, marking (T0355)A219.O as missing WARNING: atoms too close: (T0355)A135.O and (T0355)A219.O only 0.000 apart, marking (T0355)A219.O as missing WARNING: atoms too close: (T0355)N134.O and (T0355)A219.O only 0.000 apart, marking (T0355)A219.O as missing WARNING: atoms too close: (T0355)A133.O and (T0355)A219.O only 0.000 apart, marking (T0355)A219.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)A219.O only 0.000 apart, marking (T0355)A219.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)A219.O only 0.000 apart, marking (T0355)A219.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)A219.O only 0.000 apart, marking (T0355)A219.O as missing WARNING: atoms too close: (T0355)G218.C and (T0355)A219.C only 0.000 apart, marking (T0355)A219.C as missing WARNING: atoms too close: (T0355)V198.C and (T0355)A219.C only 0.000 apart, marking (T0355)A219.C as missing WARNING: atoms too close: (T0355)G197.C and (T0355)A219.C only 0.000 apart, marking (T0355)A219.C as missing WARNING: atoms too close: (T0355)D196.C and (T0355)A219.C only 0.000 apart, marking (T0355)A219.C as missing WARNING: atoms too close: (T0355)A195.C and (T0355)A219.C only 0.000 apart, marking (T0355)A219.C as missing WARNING: atoms too close: (T0355)D184.C and (T0355)A219.C only 0.000 apart, marking (T0355)A219.C as missing WARNING: atoms too close: (T0355)I183.C and (T0355)A219.C only 0.000 apart, marking (T0355)A219.C as missing WARNING: atoms too close: (T0355)S182.C and (T0355)A219.C only 0.000 apart, marking (T0355)A219.C as missing WARNING: atoms too close: (T0355)Y136.C and (T0355)A219.C only 0.000 apart, marking (T0355)A219.C as missing WARNING: atoms too close: (T0355)A135.C and (T0355)A219.C only 0.000 apart, marking (T0355)A219.C as missing WARNING: atoms too close: (T0355)N134.C and (T0355)A219.C only 0.000 apart, marking (T0355)A219.C as missing WARNING: atoms too close: (T0355)A133.C and (T0355)A219.C only 0.000 apart, marking (T0355)A219.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)A219.C only 0.000 apart, marking (T0355)A219.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)A219.C only 0.000 apart, marking (T0355)A219.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)A219.C only 0.000 apart, marking (T0355)A219.C as missing WARNING: atoms too close: (T0355)A219.N and (T0355)A220.N only 0.000 apart, marking (T0355)A219.N as missing WARNING: atoms too close: (T0355)G218.N and (T0355)A220.N only 0.000 apart, marking (T0355)G218.N as missing WARNING: atoms too close: (T0355)V198.N and (T0355)A220.N only 0.000 apart, marking (T0355)V198.N as missing WARNING: atoms too close: (T0355)G197.N and (T0355)A220.N only 0.000 apart, marking (T0355)G197.N as missing WARNING: atoms too close: (T0355)D196.N and (T0355)A220.N only 0.000 apart, marking (T0355)D196.N as missing WARNING: atoms too close: (T0355)A195.N and (T0355)A220.N only 0.000 apart, marking (T0355)A195.N as missing WARNING: atoms too close: (T0355)D184.N and (T0355)A220.N only 0.000 apart, marking (T0355)D184.N as missing WARNING: atoms too close: (T0355)I183.N and (T0355)A220.N only 0.000 apart, marking (T0355)I183.N as missing WARNING: atoms too close: (T0355)S182.N and (T0355)A220.N only 0.000 apart, marking (T0355)S182.N as missing WARNING: atoms too close: (T0355)Y136.N and (T0355)A220.N only 0.000 apart, marking (T0355)Y136.N as missing WARNING: atoms too close: (T0355)A135.N and (T0355)A220.N only 0.000 apart, marking (T0355)A135.N as missing WARNING: atoms too close: (T0355)N134.N and (T0355)A220.N only 0.000 apart, marking (T0355)N134.N as missing WARNING: atoms too close: (T0355)A133.N and (T0355)A220.N only 0.000 apart, marking (T0355)A133.N as missing WARNING: atoms too close: (T0355)W132.N and (T0355)A220.N only 0.000 apart, marking (T0355)W132.N as missing WARNING: atoms too close: (T0355)Q131.N and (T0355)A220.N only 0.000 apart, marking (T0355)Q131.N as missing WARNING: atoms too close: (T0355)N130.N and (T0355)A220.N only 0.000 apart, marking (T0355)A220.N as missing WARNING: atoms too close: (T0355)A219.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)G218.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)V198.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)G197.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)D196.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)A195.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)D184.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)I183.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)S182.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)Y136.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)A135.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)N134.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)A133.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)W132.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)Q131.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)N130.CA and (T0355)A220.CA only 0.000 apart, marking (T0355)A220.CA as missing WARNING: atoms too close: (T0355)A219.CB and (T0355)A220.CB only 0.000 apart, marking (T0355)A220.CB as missing WARNING: atoms too close: (T0355)V198.CB and (T0355)A220.CB only 0.000 apart, marking (T0355)A220.CB as missing WARNING: atoms too close: (T0355)D196.CB and (T0355)A220.CB only 0.000 apart, marking (T0355)A220.CB as missing WARNING: atoms too close: (T0355)A195.CB and (T0355)A220.CB only 0.000 apart, marking (T0355)A220.CB as missing WARNING: atoms too close: (T0355)D184.CB and (T0355)A220.CB only 0.000 apart, marking (T0355)A220.CB as missing WARNING: atoms too close: (T0355)I183.CB and (T0355)A220.CB only 0.000 apart, marking (T0355)A220.CB as missing WARNING: atoms too close: (T0355)S182.CB and (T0355)A220.CB only 0.000 apart, marking (T0355)A220.CB as missing WARNING: atoms too close: (T0355)Y136.CB and (T0355)A220.CB only 0.000 apart, marking (T0355)A220.CB as missing WARNING: atoms too close: (T0355)A135.CB and (T0355)A220.CB only 0.000 apart, marking (T0355)A220.CB as missing WARNING: atoms too close: (T0355)N134.CB and (T0355)A220.CB only 0.000 apart, marking (T0355)A220.CB as missing WARNING: atoms too close: (T0355)A133.CB and (T0355)A220.CB only 0.000 apart, marking (T0355)A220.CB as missing WARNING: atoms too close: (T0355)W132.CB and (T0355)A220.CB only 0.000 apart, marking (T0355)A220.CB as missing WARNING: atoms too close: (T0355)Q131.CB and (T0355)A220.CB only 0.000 apart, marking (T0355)A220.CB as missing WARNING: atoms too close: (T0355)N130.CB and (T0355)A220.CB only 0.000 apart, marking (T0355)A220.CB as missing WARNING: atoms too close: (T0355)A219.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)G218.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)V198.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)G197.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)D196.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)A195.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)D184.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)I183.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)S182.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)Y136.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)A135.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)N134.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)A133.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)W132.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)Q131.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)N130.O and (T0355)A220.O only 0.000 apart, marking (T0355)A220.O as missing WARNING: atoms too close: (T0355)A219.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing WARNING: atoms too close: (T0355)G218.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing WARNING: atoms too close: (T0355)V198.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing WARNING: atoms too close: (T0355)G197.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing WARNING: atoms too close: (T0355)D196.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing WARNING: atoms too close: (T0355)A195.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing WARNING: atoms too close: (T0355)D184.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing WARNING: atoms too close: (T0355)I183.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing WARNING: atoms too close: (T0355)S182.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing WARNING: atoms too close: (T0355)Y136.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing WARNING: atoms too close: (T0355)A135.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing WARNING: atoms too close: (T0355)N134.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing WARNING: atoms too close: (T0355)A133.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing WARNING: atoms too close: (T0355)W132.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing WARNING: atoms too close: (T0355)Q131.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing WARNING: atoms too close: (T0355)N130.C and (T0355)A220.C only 0.000 apart, marking (T0355)A220.C as missing # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation panther3_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 1.1546 model score 1.0849 model score 1.1647 model score 0.9291 model score 0.9824 model score 0.9584 model score 0.9623 model score 0.9537 model score 0.9588 model score 0.9845 model score 1.0007 model score 1.0004 model score 0.7484 model score 0.7038 model score 0.6962 model score 0.8104 model score 0.8238 model score 1.7394 model score 1.5877 model score 1.5742 model score 1.8456 model score 1.6309 model score 0.5135 model score 0.9605 model score 0.7306 model score 0.7198 model score 0.6684 model score 0.6316 model score 0.7730 model score 0.9170 model score 0.8172 model score 0.7445 model score 0.4972 model score 1.0344 model score 0.9461 model score 1.2697 model score 1.2657 model score 1.2722 model score 1.2642 model score 1.2661 model score 0.6358 model score 0.6169 model score 0.8055 model score 0.7864 model score 0.8894 model score 0.6944 model score 0.6316 model score 0.7005 model score 0.7306 model score 0.7198 model score 0.7484 model score 0.6962 model score 0.7038 model score 0.8238 model score 0.8104 model score 1.2659 model score 1.2758 model score 1.2735 model score 1.2748 model score 1.2757 model score 1.2801 model score 1.2778 model score 1.2840 model score 1.2776 model score 1.2734 model score 2.5602 model score 2.1958 model score 2.5051 model score 2.5654 model score 2.3767 model score 0.8473 model score 0.7860 model score 1.1137 model score 1.5360 model score 1.1254 model score 1.2724 model score 1.2635 model score 1.2692 model score 1.2674 model score 1.2703 model score 0.7129 model score 0.7446 model score 0.7313 model score 0.7838 model score 0.7005 model score 0.9709 model score 1.3176 model score 1.5456 model score 1.3231 model score 1.3811 model score 0.8506 model score 0.8573 model score 0.6884 model score 0.7654 model score 0.6796 model score 0.6353 model score 0.6523 model score 0.6440 model score 0.6855 model score 0.8653 model score 0.7601 model score 0.9925 model score 0.5355 model score 0.8624 model score 0.8514 model score 1.5294 model score 0.9191 model score 0.8883 model score 0.7517 model score 0.6998 model score 0.9042 model score 0.7726 model score 0.6115 model score 0.8025 model score 0.6998 model score 0.8802 model score 0.7726 model score 0.5314 model score 0.6872 model score 0.6743 model score 0.7049 model score 0.6577 model score 0.6872 model score 0.8624 model score 2.3532 model score 2.3734 model score 2.0920 model score 1.8864 model score 2.1338 model score 0.6833 model score 0.7030 model score 0.6945 model score 0.6875 model score 0.6836 model score 0.6522 model score 0.6575 model score 0.6731 model score 1.0926 model score 0.8538 model score 0.6645 model score 0.6548 model score 0.7076 model score 0.5150 model score 0.7167 model score 0.8308 model score 0.7207 model score 0.7360 model score 0.8133 model score 0.7429 model score 0.7528 model score 0.6106 model 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USE_META, weight: 0.8998 cost: 0.6825 min: 0.4467 max: 2.5654 USE_META, weight: 0.9033 cost: 0.6743 min: 0.4467 max: 2.5654 USE_META, weight: 0.9017 cost: 0.6780 min: 0.4467 max: 2.5654 USE_META, weight: 0.9870 cost: 0.4773 min: 0.4467 max: 2.5654 USE_META, weight: 0.8671 cost: 0.7597 min: 0.4467 max: 2.5654 USE_META, weight: 0.6530 cost: 1.2635 min: 0.4467 max: 2.5654 USE_META, weight: 0.6498 cost: 1.2712 min: 0.4467 max: 2.5654 USE_META, weight: 0.6494 cost: 1.2719 min: 0.4467 max: 2.5654 USE_META, weight: 0.6532 cost: 1.2632 min: 0.4467 max: 2.5654 USE_META, weight: 0.6514 cost: 1.2674 min: 0.4467 max: 2.5654 USE_META, weight: 0.7216 cost: 1.1022 min: 0.4467 max: 2.5654 USE_META, weight: 0.3638 cost: 1.9443 min: 0.4467 max: 2.5654 USE_META, weight: 0.5294 cost: 1.5545 min: 0.4467 max: 2.5654 USE_META, weight: 0.3971 cost: 1.8660 min: 0.4467 max: 2.5654 USE_META, weight: 0.2690 cost: 2.1674 min: 0.4467 max: 2.5654 USE_META, weight: 0.2409 cost: 2.2337 min: 0.4467 max: 2.5654 USE_META, weight: 0.2649 cost: 2.1772 min: 0.4467 max: 2.5654 USE_META, weight: 0.2277 cost: 2.2648 min: 0.4467 max: 2.5654 USE_META, weight: 0.3150 cost: 2.0593 min: 0.4467 max: 2.5654 USE_META, weight: 0.2356 cost: 2.2462 min: 0.4467 max: 2.5654 USE_META, weight: 0.9027 cost: 0.6759 min: 0.4467 max: 2.5654 USE_META, weight: 0.8755 cost: 0.7397 min: 0.4467 max: 2.5654 USE_META, weight: 0.9022 cost: 0.6770 min: 0.4467 max: 2.5654 USE_META, weight: 0.8524 cost: 0.7941 min: 0.4467 max: 2.5654 USE_META, weight: 0.8757 cost: 0.7392 min: 0.4467 max: 2.5654 USE_META, weight: 0.8296 cost: 0.8479 min: 0.4467 max: 2.5654 USE_META, weight: 0.9009 cost: 0.6799 min: 0.4467 max: 2.5654 USE_META, weight: 0.8953 cost: 0.6933 min: 0.4467 max: 2.5654 USE_META, weight: 0.7721 cost: 0.9831 min: 0.4467 max: 2.5654 USE_META, weight: 0.8480 cost: 0.8046 min: 0.4467 max: 2.5654 USE_META, weight: 0.8800 cost: 0.7291 min: 0.4467 max: 2.5654 USE_META, weight: 0.5887 cost: 1.4149 min: 0.4467 max: 2.5654 USE_META, weight: 0.9077 cost: 0.6640 min: 0.4467 max: 2.5654 USE_META, weight: 0.7101 cost: 1.1293 min: 0.4467 max: 2.5654 USE_META, weight: 0.6283 cost: 1.3217 min: 0.4467 max: 2.5654 USE_META, weight: 0.6046 cost: 1.3775 min: 0.4467 max: 2.5654 USE_META, weight: 0.8097 cost: 0.8946 min: 0.4467 max: 2.5654 USE_META, weight: 0.5139 cost: 1.5910 min: 0.4467 max: 2.5654 USE_META, weight: 1.0000 cost: 0.4467 min: 0.4467 max: 2.5654 USE_EVALUE, weight: 0.9955 eval: 0.0002 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9955 eval: 0.0002 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9955 eval: 0.0002 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9883 eval: 0.0005 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9883 eval: 0.0005 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9883 eval: 0.0005 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9998 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9998 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9998 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9967 eval: 0.0002 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9967 eval: 0.0002 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9967 eval: 0.0002 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9912 eval: 0.0004 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9912 eval: 0.0004 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9912 eval: 0.0004 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9918 eval: 0.0004 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9918 eval: 0.0004 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9918 eval: 0.0004 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9972 eval: 0.0001 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9972 eval: 0.0001 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9972 eval: 0.0001 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9982 eval: 0.0001 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9982 eval: 0.0001 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9982 eval: 0.0001 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.1000 eval: 0.0415 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.1000 eval: 0.0415 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.1000 eval: 0.0415 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9948 eval: 0.0002 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9948 eval: 0.0002 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9948 eval: 0.0002 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9929 eval: 0.0003 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9929 eval: 0.0003 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9929 eval: 0.0003 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9981 eval: 0.0001 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9981 eval: 0.0001 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9981 eval: 0.0001 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9998 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9998 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9998 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.8419 eval: 0.0073 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.8419 eval: 0.0073 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.8419 eval: 0.0073 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9998 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9998 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9998 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 1.0000 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 USE_EVALUE, weight: 0.9999 eval: 0.0000 min: 0.0000 max: 0.0415 Number of contacts in models: 262 Number of contacts in alignments: 159 NUMB_ALIGNS: 159 Adding 19173 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -537.7897, CN propb: -537.7897 weights: 0.1755 constraints: 1334 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 1334 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 1334 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 17839 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 17839 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 19173 # command: