# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0352/ # command:# Making conformation for sequence T0352 numbered 1 through 117 Created new target T0352 from T0352.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0352/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0352//projects/compbio/experiments/protein-predict/casp7/T0352/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0352//projects/compbio/experiments/protein-predict/casp7/T0352/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0352/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0352/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0352)A82.CB, (T0352)I93.CB) [> 4.1106 = 6.8510 < 8.9063] w=1.0000 to align # Constraint # added constraint: constraint((T0352)M59.CB, (T0352)I93.CB) [> 3.7539 = 6.2565 < 8.1335] w=0.9420 to align # Constraint # added constraint: constraint((T0352)Y78.CB, (T0352)I93.CB) [> 3.4542 = 5.7571 < 7.4842] w=0.8177 to align # Constraint # added constraint: constraint((T0352)L14.CB, (T0352)L62.CB) [> 4.1947 = 6.9912 < 9.0885] w=0.7987 to align # Constraint # added constraint: constraint((T0352)I56.CB, (T0352)V75.CB) [> 3.2322 = 5.3870 < 7.0030] w=0.6664 to align # Constraint # added constraint: constraint((T0352)A82.CB, (T0352)E96.CB) [> 3.5719 = 5.9532 < 7.7392] w=0.6464 to align # Constraint # added constraint: constraint((T0352)Y78.CB, (T0352)R90.CB) [> 3.0345 = 5.0576 < 6.5749] w=0.5956 to align # Constraint # added constraint: constraint((T0352)Y78.CB, (T0352)L94.CB) [> 4.1081 = 6.8469 < 8.9010] w=0.5956 to align # Constraint # added constraint: constraint((T0352)M81.CB, (T0352)R90.CB) [> 2.7911 = 4.6519 < 6.0474] w=0.5956 to align # Constraint # added constraint: constraint((T0352)P47.CB, (T0352)I56.CB) [> 4.2252 = 7.0420 < 9.1546] w=0.5726 to align # Constraint # added constraint: constraint((T0352)L14.CB, (T0352)R58.CB) [> 3.8585 = 6.4309 < 8.3601] w=0.5571 to align # Constraint # added constraint: constraint((T0352)A82.CB, (T0352)L97.CB) [> 4.5064 = 7.5107 < 9.7639] w=0.5501 to align # Constraint # added constraint: constraint((T0352)A82.CB, (T0352)L100.CB) [> 4.0780 = 6.7966 < 8.8356] w=0.5406 to align # Constraint # added constraint: constraint((T0352)L55.CB, (T0352)Y78.CB) [> 3.6158 = 6.0264 < 7.8343] w=0.5378 to align # Constraint # added constraint: constraint((T0352)R8.CB, (T0352)F34.CB) [> 3.4164 = 5.6940 < 7.4022] w=0.5273 to align # Constraint # added constraint: constraint((T0352)L11.CB, (T0352)V54.CB) [> 3.3590 = 5.5984 < 7.2779] w=0.5205 to align # Constraint # added constraint: constraint((T0352)I56.CB, (T0352)Y79.CB) [> 4.0805 = 6.8007 < 8.8410] w=0.5092 to align # Constraint # added constraint: constraint((T0352)M59.CB, (T0352)F73.CB) [> 3.9666 = 6.6111 < 8.5944] w=0.4966 to align # Constraint # added constraint: constraint((T0352)Y79.CB, (T0352)L103.CB) [> 4.5055 = 7.5091 < 9.7618] w=0.4803 to align # Constraint # added constraint: constraint((T0352)V7.CB, (T0352)F34.CB) [> 3.2761 = 5.4602 < 7.0983] w=0.4468 to align # Constraint # added constraint: constraint((T0352)H4.CB, (T0352)F34.CB) [> 2.9256 = 4.8760 < 6.3387] w=0.4468 to align # Constraint # added constraint: constraint((T0352)L55.CB, (T0352)L97.CB) [> 3.7735 = 6.2892 < 8.1760] w=0.4466 to align # Constraint # added constraint: constraint((T0352)F73.CB, (T0352)R90.CB) [> 3.8654 = 6.4424 < 8.3751] w=0.4428 to align # Constraint # added constraint: constraint((T0352)P77.CB, (T0352)I93.CB) [> 4.5348 = 7.5581 < 9.8255] w=0.4250 to align # Constraint # added constraint: constraint((T0352)F40.CB, (T0352)Q52.CB) [> 3.9548 = 6.5913 < 8.5687] w=0.4244 to align # Constraint # added constraint: constraint((T0352)L63.CB, (T0352)I93.CB) [> 4.3889 = 7.3148 < 9.5093] w=0.4180 to align # Constraint # added constraint: constraint((T0352)M59.CB, (T0352)V75.CB) [> 3.3145 = 5.5242 < 7.1814] w=0.4082 to align # Constraint # added constraint: constraint((T0352)E15.CB, (T0352)P29.CB) [> 3.2774 = 5.4623 < 7.1010] w=0.4039 to align # Constraint # added constraint: constraint((T0352)I56.CB, (T0352)F73.CB) [> 3.5606 = 5.9344 < 7.7147] w=0.4028 to align # Constraint # added constraint: constraint((T0352)H60.CB, (T0352)P70.CB) [> 3.0278 = 5.0463 < 6.5602] w=0.4028 to align # Constraint # added constraint: constraint((T0352)H60.CB, (T0352)G71.CA) [> 4.4907 = 7.4845 < 9.7298] w=0.4028 to align # Constraint # added constraint: constraint((T0352)H60.CB, (T0352)F73.CB) [> 4.1759 = 6.9598 < 9.0478] w=0.4028 to align # Constraint # added constraint: constraint((T0352)L18.CB, (T0352)F34.CB) [> 3.6589 = 6.0981 < 7.9275] w=0.3955 to align # Constraint # added constraint: constraint((T0352)L63.CB, (T0352)F73.CB) [> 4.3354 = 7.2257 < 9.3934] w=0.3950 to align # Constraint # added constraint: constraint((T0352)I56.CB, (T0352)A76.CB) [> 3.5252 = 5.8753 < 7.6380] w=0.3950 to align # Constraint # added constraint: constraint((T0352)A76.CB, (T0352)L103.CB) [> 4.4679 = 7.4465 < 9.6804] w=0.3929 to align # Constraint # added constraint: constraint((T0352)M45.CB, (T0352)R58.CB) [> 4.4460 = 7.4100 < 9.6330] w=0.3847 to align # Constraint # added constraint: constraint((T0352)L18.CB, (T0352)P29.CB) [> 2.9204 = 4.8673 < 6.3275] w=0.3823 to align # Constraint # added constraint: constraint((T0352)Y79.CB, (T0352)L100.CB) [> 3.2595 = 5.4325 < 7.0623] w=0.3764 to align # Constraint # added constraint: constraint((T0352)L69.CB, (T0352)L83.CB) [> 4.2907 = 7.1511 < 9.2965] w=0.3713 to align # Constraint # added constraint: constraint((T0352)P70.CB, (T0352)E80.CB) [> 4.7728 = 7.9547 < 10.3411] w=0.3713 to align # Constraint # added constraint: constraint((T0352)G71.CA, (T0352)E80.CB) [> 2.6049 = 4.3416 < 5.6441] w=0.3713 to align # Constraint # added constraint: constraint((T0352)G71.CA, (T0352)L83.CB) [> 4.4413 = 7.4021 < 9.6227] w=0.3713 to align # Constraint # added constraint: constraint((T0352)A76.CB, (T0352)L110.CB) [> 2.4874 = 4.1457 < 5.3894] w=0.3713 to align # Constraint # added constraint: constraint((T0352)Y78.CB, (T0352)L103.CB) [> 3.6328 = 6.0547 < 7.8711] w=0.3713 to align # Constraint # added constraint: constraint((T0352)Y78.CB, (T0352)L110.CB) [> 3.7729 = 6.2881 < 8.1746] w=0.3713 to align # Constraint # added constraint: constraint((T0352)Y79.CB, (T0352)L110.CB) [> 4.3132 = 7.1886 < 9.3452] w=0.3713 to align # Constraint # added constraint: constraint((T0352)Q10.CB, (T0352)R58.CB) [> 4.5018 = 7.5030 < 9.7539] w=0.3607 to align # Constraint # added constraint: constraint((T0352)L83.CB, (T0352)F104.CB) [> 4.1393 = 6.8988 < 8.9685] w=0.3548 to align # Constraint # added constraint: constraint((T0352)H4.CB, (T0352)N35.CB) [> 4.5000 = 7.4999 < 9.7499] w=0.3536 to align # Constraint # added constraint: constraint((T0352)M45.CB, (T0352)V54.CB) [> 3.3608 = 5.6013 < 7.2817] w=0.3519 to align # Constraint # added constraint: constraint((T0352)L55.CB, (T0352)V75.CB) [> 3.1262 = 5.2104 < 6.7735] w=0.3519 to align # Constraint # added constraint: constraint((T0352)L14.CB, (T0352)V54.CB) [> 4.4418 = 7.4030 < 9.6239] w=0.3446 to align # Constraint # added constraint: constraint((T0352)L11.CB, (T0352)L62.CB) [> 4.6129 = 7.6882 < 9.9946] w=0.3398 to align # Constraint # added constraint: constraint((T0352)Q52.CB, (T0352)I93.CB) [> 4.1516 = 6.9193 < 8.9951] w=0.3394 to align # Constraint # added constraint: constraint((T0352)E49.CB, (T0352)L97.CB) [> 4.3865 = 7.3108 < 9.5040] w=0.3394 to align # Constraint # added constraint: constraint((T0352)Y79.CB, (T0352)L94.CB) [> 3.8641 = 6.4401 < 8.3721] w=0.3392 to align # Constraint # added constraint: constraint((T0352)Y79.CB, (T0352)R90.CB) [> 4.3893 = 7.3155 < 9.5102] w=0.3392 to align # Constraint # added constraint: constraint((T0352)A13.CB, (T0352)N65.CB) [> 3.2138 = 5.3564 < 6.9633] w=0.3389 to align # Constraint # added constraint: constraint((T0352)L17.CB, (T0352)D61.CB) [> 2.8419 = 4.7366 < 6.1575] w=0.3389 to align # Constraint # added constraint: constraint((T0352)L17.CB, (T0352)N65.CB) [> 3.7884 = 6.3140 < 8.2081] w=0.3389 to align # Constraint # added constraint: constraint((T0352)L62.CB, (T0352)L92.CB) [> 3.4590 = 5.7649 < 7.4944] w=0.3381 to align # Constraint # added constraint: constraint((T0352)R58.CB, (T0352)E96.CB) [> 3.2729 = 5.4548 < 7.0912] w=0.3381 to align # Constraint # added constraint: constraint((T0352)R58.CB, (T0352)I93.CB) [> 2.4992 = 4.1653 < 5.4149] w=0.3381 to align # Constraint # added constraint: constraint((T0352)M59.CB, (T0352)P77.CB) [> 4.0778 = 6.7963 < 8.8351] w=0.3375 to align # Constraint # added constraint: constraint((T0352)L11.CB, (T0352)M59.CB) [> 3.2152 = 5.3586 < 6.9662] w=0.3272 to align # Constraint # added constraint: constraint((T0352)M45.CB, (T0352)L97.CB) [> 3.9920 = 6.6533 < 8.6492] w=0.3230 to align # Constraint # added constraint: constraint((T0352)A82.CB, (T0352)K99.CB) [> 3.6472 = 6.0787 < 7.9023] w=0.3185 to align # Constraint # added constraint: constraint((T0352)P70.CB, (T0352)Y79.CB) [> 4.1350 = 6.8917 < 8.9591] w=0.3158 to align # Constraint # added constraint: constraint((T0352)L63.CB, (T0352)V75.CB) [> 4.2068 = 7.0114 < 9.1148] w=0.3145 to align # Constraint # added constraint: constraint((T0352)H60.CB, (T0352)V75.CB) [> 3.1250 = 5.2083 < 6.7708] w=0.3145 to align # Constraint # added constraint: constraint((T0352)W50.CB, (T0352)M59.CB) [> 3.5954 = 5.9924 < 7.7901] w=0.3145 to align # Constraint # added constraint: constraint((T0352)L51.CB, (T0352)L97.CB) [> 3.3150 = 5.5249 < 7.1824] w=0.3032 to align # Constraint # added constraint: constraint((T0352)E15.CB, (T0352)D61.CB) [> 3.8394 = 6.3990 < 8.3187] w=0.2989 to align # Constraint # added constraint: constraint((T0352)L55.CB, (T0352)L94.CB) [> 4.2613 = 7.1022 < 9.2329] w=0.2985 to align # Constraint # added constraint: constraint((T0352)L18.CB, (T0352)T44.CB) [> 4.5551 = 7.5918 < 9.8693] w=0.2859 to align # Constraint # added constraint: constraint((T0352)L17.CB, (T0352)H60.CB) [> 4.6523 = 7.7538 < 10.0800] w=0.2829 to align # Constraint # added constraint: constraint((T0352)M59.CB, (T0352)Y78.CB) [> 3.3784 = 5.6307 < 7.3199] w=0.2797 to align # Constraint # added constraint: constraint((T0352)W24.CB, (T0352)F40.CB) [> 4.0142 = 6.6903 < 8.6973] w=0.2797 to align # Constraint # added constraint: constraint((T0352)W24.CB, (T0352)P39.CB) [> 4.4483 = 7.4138 < 9.6379] w=0.2797 to align # Constraint # added constraint: constraint((T0352)Q12.CB, (T0352)V54.CB) [> 4.7099 = 7.8499 < 10.2049] w=0.2797 to align # Constraint # added constraint: constraint((T0352)L11.CB, (T0352)R58.CB) [> 3.3935 = 5.6558 < 7.3525] w=0.2797 to align # Constraint # added constraint: constraint((T0352)L55.CB, (T0352)P77.CB) [> 2.7136 = 4.5226 < 5.8794] w=0.2797 to align # Constraint # added constraint: constraint((T0352)Q52.CB, (T0352)E80.CB) [> 3.1081 = 5.1801 < 6.7342] w=0.2797 to align # Constraint # added constraint: constraint((T0352)F40.CB, (T0352)V54.CB) [> 3.7263 = 6.2105 < 8.0736] w=0.2797 to align # Constraint # added constraint: constraint((T0352)F40.CB, (T0352)W53.CB) [> 4.3394 = 7.2323 < 9.4020] w=0.2797 to align # Constraint # added constraint: constraint((T0352)Q38.CB, (T0352)F73.CB) [> 4.4710 = 7.4516 < 9.6871] w=0.2797 to align # Constraint # added constraint: constraint((T0352)T37.CB, (T0352)F73.CB) [> 4.3459 = 7.2432 < 9.4161] w=0.2797 to align # Constraint # added constraint: constraint((T0352)L69.CB, (T0352)Y79.CB) [> 3.6369 = 6.0615 < 7.8800] w=0.2752 to align # Constraint # added constraint: constraint((T0352)P47.CB, (T0352)V75.CB) [> 2.2181 = 3.6969 < 4.8059] w=0.2739 to align # Constraint # added constraint: constraint((T0352)T44.CB, (T0352)L100.CB) [> 3.4254 = 5.7090 < 7.4217] w=0.2581 to align # Constraint # added constraint: constraint((T0352)T44.CB, (T0352)L97.CB) [> 4.2728 = 7.1213 < 9.2576] w=0.2581 to align # Constraint # added constraint: constraint((T0352)T44.CB, (T0352)R58.CB) [> 3.4157 = 5.6928 < 7.4007] w=0.2581 to align # Constraint # added constraint: constraint((T0352)T44.CB, (T0352)P57.CB) [> 3.5887 = 5.9812 < 7.7755] w=0.2581 to align # Constraint # added constraint: constraint((T0352)T44.CB, (T0352)V54.CB) [> 2.5729 = 4.2882 < 5.5746] w=0.2581 to align # Constraint # added constraint: constraint((T0352)D43.CB, (T0352)P57.CB) [> 3.4807 = 5.8011 < 7.5415] w=0.2581 to align # Constraint # added constraint: constraint((T0352)D43.CB, (T0352)V54.CB) [> 3.5260 = 5.8766 < 7.6396] w=0.2581 to align # Constraint # added constraint: constraint((T0352)L14.CB, (T0352)E96.CB) [> 4.7208 = 7.8680 < 10.2284] w=0.2581 to align # Constraint # added constraint: constraint((T0352)L14.CB, (T0352)T44.CB) [> 4.5205 = 7.5341 < 9.7944] w=0.2581 to align # Constraint # added constraint: constraint((T0352)A82.CB, (T0352)L94.CB) [> 2.4665 = 4.1108 < 5.3440] w=0.2581 to align # Constraint # added constraint: constraint((T0352)M59.CB, (T0352)P70.CB) [> 3.9799 = 6.6331 < 8.6231] w=0.2581 to align # Constraint # added constraint: constraint((T0352)L48.CB, (T0352)V75.CB) [> 3.7509 = 6.2515 < 8.1269] w=0.2581 to align # Constraint # added constraint: constraint((T0352)M45.CB, (T0352)L100.CB) [> 3.6415 = 6.0692 < 7.8900] w=0.2581 to align # Constraint # added constraint: constraint((T0352)E15.CB, (T0352)M59.CB) [> 3.4909 = 5.8182 < 7.5636] w=0.2574 to align # Constraint # added constraint: constraint((T0352)P47.CB, (T0352)H60.CB) [> 3.5323 = 5.8872 < 7.6533] w=0.2469 to align # Constraint # added constraint: constraint((T0352)H23.CB, (T0352)Q33.CB) [> 3.2859 = 5.4764 < 7.1194] w=0.2433 to align # Constraint # added constraint: constraint((T0352)M59.CB, (T0352)L69.CB) [> 3.8280 = 6.3800 < 8.2940] w=0.2385 to align # Constraint # added constraint: constraint((T0352)L48.CB, (T0352)H60.CB) [> 4.3310 = 7.2184 < 9.3839] w=0.2345 to align # Constraint # added constraint: constraint((T0352)N35.CB, (T0352)M45.CB) [> 4.1246 = 6.8743 < 8.9366] w=0.2221 to align # Constraint # added constraint: constraint((T0352)M45.CB, (T0352)H60.CB) [> 3.1623 = 5.2705 < 6.8517] w=0.2221 to align # Constraint # added constraint: constraint((T0352)E46.CB, (T0352)H60.CB) [> 4.2773 = 7.1288 < 9.2675] w=0.2221 to align # Constraint # added constraint: constraint((T0352)V7.CB, (T0352)F40.CB) [> 4.7445 = 7.9075 < 10.2798] w=0.2142 to align # Constraint # added constraint: constraint((T0352)E15.CB, (T0352)F40.CB) [> 3.7865 = 6.3108 < 8.2040] w=0.2142 to align # Constraint # added constraint: constraint((T0352)W53.CB, (T0352)L83.CB) [> 4.6752 = 7.7921 < 10.1297] w=0.2071 to align # Constraint # added constraint: constraint((T0352)L51.CB, (T0352)L100.CB) [> 4.7460 = 7.9100 < 10.2830] w=0.2071 to align # Constraint # added constraint: constraint((T0352)M42.CB, (T0352)L51.CB) [> 3.8797 = 6.4662 < 8.4061] w=0.1947 to align # Constraint # added constraint: constraint((T0352)F41.CB, (T0352)W50.CB) [> 2.7165 = 4.5274 < 5.8857] w=0.1947 to align # Constraint # added constraint: constraint((T0352)S36.CB, (T0352)V54.CB) [> 3.2971 = 5.4952 < 7.1438] w=0.1947 to align # Constraint # added constraint: constraint((T0352)E15.CB, (T0352)M42.CB) [> 3.9384 = 6.5640 < 8.5332] w=0.1947 to align # Constraint # added constraint: constraint((T0352)L11.CB, (T0352)M42.CB) [> 3.5878 = 5.9796 < 7.7735] w=0.1947 to align # Constraint # added constraint: constraint((T0352)Q10.CB, (T0352)F104.CB) [> 4.0304 = 6.7172 < 8.7324] w=0.1947 to align # Constraint # added constraint: constraint((T0352)V7.CB, (T0352)L97.CB) [> 3.4364 = 5.7273 < 7.4455] w=0.1947 to align # Constraint # added constraint: constraint((T0352)R6.CB, (T0352)D101.CB) [> 4.1973 = 6.9955 < 9.0942] w=0.1947 to align # Constraint # added constraint: constraint((T0352)V7.CB, (T0352)H60.CB) [> 4.7086 = 7.8476 < 10.2019] w=0.1887 to align # Constraint # added constraint: constraint((T0352)H21.CB, (T0352)F34.CB) [> 3.4157 = 5.6929 < 7.4008] w=0.1884 to align # Constraint # added constraint: constraint((T0352)Q38.CB, (T0352)W53.CB) [> 4.5025 = 7.5042 < 9.7554] w=0.1864 to align # Constraint # added constraint: constraint((T0352)P39.CB, (T0352)P70.CB) [> 4.5629 = 7.6048 < 9.8862] w=0.1864 to align # Constraint # added constraint: constraint((T0352)P39.CB, (T0352)P77.CB) [> 4.6574 = 7.7622 < 10.0909] w=0.1864 to align # Constraint # added constraint: constraint((T0352)F40.CB, (T0352)L51.CB) [> 3.4129 = 5.6882 < 7.3946] w=0.1864 to align # Constraint # added constraint: constraint((T0352)L51.CB, (T0352)P77.CB) [> 2.5581 = 4.2635 < 5.5426] w=0.1864 to align # Constraint # added constraint: constraint((T0352)M59.CB, (T0352)L83.CB) [> 3.6053 = 6.0088 < 7.8114] w=0.1857 to align # Constraint # added constraint: constraint((T0352)F73.CB, (T0352)H87.CB) [> 3.2164 = 5.3606 < 6.9688] w=0.1847 to align # Constraint # added constraint: constraint((T0352)L18.CB, (T0352)S36.CB) [> 3.8712 = 6.4519 < 8.3875] w=0.1704 to align # Constraint # added constraint: constraint((T0352)L11.CB, (T0352)H60.CB) [> 3.2199 = 5.3666 < 6.9765] w=0.1609 to align # Constraint # added constraint: constraint((T0352)L14.CB, (T0352)L97.CB) [> 4.7772 = 7.9620 < 10.3506] w=0.1609 to align # Constraint # added constraint: constraint((T0352)Q33.CB, (T0352)R58.CB) [> 2.9045 = 4.8409 < 6.2932] w=0.1609 to align # Constraint # added constraint: constraint((T0352)V7.CB, (T0352)P39.CB) [> 4.0901 = 6.8168 < 8.8618] w=0.1489 to align # Constraint # added constraint: constraint((T0352)H23.CB, (T0352)P47.CB) [> 3.6056 = 6.0094 < 7.8122] w=0.1482 to align # Constraint # added constraint: constraint((T0352)F73.CB, (T0352)L94.CB) [> 3.9610 = 6.6017 < 8.5822] w=0.1447 to align # Constraint # added constraint: constraint((T0352)H60.CB, (T0352)A72.CB) [> 3.6908 = 6.1513 < 7.9967] w=0.1447 to align # Constraint # added constraint: constraint((T0352)M59.CB, (T0352)A72.CB) [> 3.1732 = 5.2887 < 6.8753] w=0.1447 to align # Constraint # added constraint: constraint((T0352)R6.CB, (T0352)F104.CB) [> 4.1969 = 6.9949 < 9.0934] w=0.1298 to align # Constraint # added constraint: constraint((T0352)R8.CB, (T0352)M42.CB) [> 2.9859 = 4.9764 < 6.4693] w=0.1298 to align # Constraint # added constraint: constraint((T0352)R8.CB, (T0352)D43.CB) [> 4.2099 = 7.0166 < 9.1215] w=0.1298 to align # Constraint # added constraint: constraint((T0352)L63.CB, (T0352)L83.CB) [> 3.1229 = 5.2048 < 6.7662] w=0.1211 to align # Constraint # added constraint: constraint((T0352)E15.CB, (T0352)P47.CB) [> 3.9799 = 6.6332 < 8.6232] w=0.1111 to align # Constraint # added constraint: constraint((T0352)E15.CB, (T0352)W50.CB) [> 3.8647 = 6.4412 < 8.3735] w=0.1111 to align # Constraint # added constraint: constraint((T0352)H23.CB, (T0352)W50.CB) [> 3.2951 = 5.4918 < 7.1394] w=0.1111 to align # Constraint # added constraint: constraint((T0352)P39.CB, (T0352)W53.CB) [> 3.9614 = 6.6024 < 8.5831] w=0.1090 to align # Constraint # added constraint: constraint((T0352)H21.CB, (T0352)S36.CB) [> 3.0058 = 5.0096 < 6.5125] w=0.1055 to align # Constraint # added constraint: constraint((T0352)R19.CB, (T0352)Q38.CB) [> 4.5125 = 7.5208 < 9.7771] w=0.1055 to align # Constraint # added constraint: constraint((T0352)E15.CB, (T0352)A72.CB) [> 3.6304 = 6.0506 < 7.8658] w=0.0965 to align # Constraint # added constraint: constraint((T0352)H21.CB, (T0352)F40.CB) [> 4.3792 = 7.2987 < 9.4883] w=0.0965 to align # Constraint # added constraint: constraint((T0352)L51.CB, (T0352)V75.CB) [> 3.0487 = 5.0811 < 6.6055] w=0.0937 to align # Constraint # added constraint: constraint((T0352)Q38.CB, (T0352)P70.CB) [> 4.5379 = 7.5631 < 9.8321] w=0.0932 to align # Constraint # added constraint: constraint((T0352)Q38.CB, (T0352)P77.CB) [> 4.5784 = 7.6307 < 9.9199] w=0.0932 to align # Constraint # added constraint: constraint((T0352)F40.CB, (T0352)P77.CB) [> 2.6385 = 4.3975 < 5.7168] w=0.0932 to align # Constraint # added constraint: constraint((T0352)E15.CB, (T0352)P39.CB) [> 3.4397 = 5.7328 < 7.4526] w=0.0860 to align # Constraint # added constraint: constraint((T0352)F41.CB, (T0352)L100.CB) [> 4.6107 = 7.6844 < 9.9898] w=0.0860 to align # Constraint # added constraint: constraint((T0352)M45.CB, (T0352)D101.CB) [> 3.8985 = 6.4975 < 8.4467] w=0.0860 to align # Constraint # added constraint: constraint((T0352)P47.CB, (T0352)M59.CB) [> 4.4431 = 7.4051 < 9.6266] w=0.0826 to align # Constraint # added constraint: constraint((T0352)W24.CB, (T0352)R58.CB) [> 3.9023 = 6.5038 < 8.4550] w=0.0807 to align # Constraint # added constraint: constraint((T0352)L48.CB, (T0352)E98.CB) [> 4.3041 = 7.1735 < 9.3255] w=0.0807 to align # Constraint # added constraint: constraint((T0352)M59.CB, (T0352)A76.CB) [> 3.4145 = 5.6908 < 7.3981] w=0.0805 to align # Constraint # added constraint: constraint((T0352)H60.CB, (T0352)A76.CB) [> 4.2787 = 7.1312 < 9.2706] w=0.0805 to align # Constraint # added constraint: constraint((T0352)R58.CB, (T0352)A95.CB) [> 4.5790 = 7.6317 < 9.9212] w=0.0800 to align # Constraint # added constraint: constraint((T0352)G71.CA, (T0352)H87.CB) [> 4.1944 = 6.9907 < 9.0879] w=0.0800 to align # Constraint # added constraint: constraint((T0352)E46.CB, (T0352)R58.CB) [> 4.1719 = 6.9532 < 9.0392] w=0.0702 to align # Constraint # added constraint: constraint((T0352)Q10.CB, (T0352)Q52.CB) [> 4.5453 = 7.5755 < 9.8482] w=0.0649 to align # Constraint # added constraint: constraint((T0352)V7.CB, (T0352)R58.CB) [> 3.3670 = 5.6117 < 7.2952] w=0.0602 to align # Constraint # added constraint: constraint((T0352)E15.CB, (T0352)W24.CB) [> 3.7172 = 6.1953 < 8.0538] w=0.0595 to align # Constraint # added constraint: constraint((T0352)M42.CB, (T0352)L69.CB) [> 3.6571 = 6.0952 < 7.9237] w=0.0578 to align # Constraint # added constraint: constraint((T0352)M42.CB, (T0352)Q67.CB) [> 2.8660 = 4.7767 < 6.2097] w=0.0578 to align # Constraint # added constraint: constraint((T0352)M42.CB, (T0352)M59.CB) [> 4.2229 = 7.0383 < 9.1497] w=0.0578 to align # Constraint # added constraint: constraint((T0352)F41.CB, (T0352)Q67.CB) [> 4.3410 = 7.2351 < 9.4056] w=0.0578 to align # Constraint # added constraint: constraint((T0352)F41.CB, (T0352)R58.CB) [> 4.6781 = 7.7969 < 10.1359] w=0.0578 to align # Constraint # added constraint: constraint((T0352)M45.CB, (T0352)M59.CB) [> 3.8454 = 6.4089 < 8.3316] w=0.0578 to align # Constraint # added constraint: constraint((T0352)D43.CB, (T0352)P77.CB) [> 3.7470 = 6.2449 < 8.1184] w=0.0578 to align # Constraint # added constraint: constraint((T0352)D43.CB, (T0352)A76.CB) [> 4.7633 = 7.9389 < 10.3205] w=0.0578 to align # Constraint # added constraint: constraint((T0352)D43.CB, (T0352)G71.CA) [> 4.4622 = 7.4371 < 9.6682] w=0.0578 to align # Constraint # added constraint: constraint((T0352)M42.CB, (T0352)P77.CB) [> 3.1941 = 5.3235 < 6.9206] w=0.0578 to align # Constraint # added constraint: constraint((T0352)A74.CB, (T0352)A91.CB) [> 4.0545 = 6.7574 < 8.7847] w=0.0482 to align # Constraint # added constraint: constraint((T0352)E15.CB, (T0352)T44.CB) [> 4.7586 = 7.9310 < 10.3103] w=0.0437 to align # Constraint # added constraint: constraint((T0352)E15.CB, (T0352)F41.CB) [> 3.8226 = 6.3710 < 8.2823] w=0.0390 to align # Constraint # added constraint: constraint((T0352)V7.CB, (T0352)F41.CB) [> 4.4562 = 7.4269 < 9.6550] w=0.0386 to align # Constraint # added constraint: constraint((T0352)H23.CB, (T0352)L103.CB) [> 3.4022 = 5.6703 < 7.3714] w=0.0371 to align # Constraint # added constraint: constraint((T0352)L63.CB, (T0352)A74.CB) [> 4.3118 = 7.1863 < 9.3422] w=0.0371 to align # Constraint # added constraint: constraint((T0352)L62.CB, (T0352)A74.CB) [> 4.7565 = 7.9275 < 10.3057] w=0.0248 to align # Constraint # added constraint: constraint((T0352)Q38.CB, (T0352)L92.CB) [> 4.3533 = 7.2554 < 9.4321] w=0.0216 to align # Constraint # added constraint: constraint((T0352)A72.CB, (T0352)E98.CB) [> 4.7835 = 7.9725 < 10.3643] w=0.0216 to align # Constraint # added constraint: constraint((T0352)F40.CB, (T0352)A74.CB) [> 3.1622 = 5.2704 < 6.8515] w=0.0216 to align # Constraint # added constraint: constraint((T0352)F41.CB, (T0352)L55.CB) [> 3.1716 = 5.2859 < 6.8717] w=0.0216 to align # Constraint # added constraint: constraint((T0352)F41.CB, (T0352)L92.CB) [> 4.6584 = 7.7640 < 10.0931] w=0.0216 to align # Constraint # added constraint: constraint((T0352)E15.CB, (T0352)Q38.CB) [> 3.1382 = 5.2304 < 6.7995] w=0.0195 to align # Constraint # added constraint: constraint((T0352)W50.CB, (T0352)F104.CB) [> 4.3400 = 7.2333 < 9.4033] w=0.0158 to align # Constraint # added constraint: constraint((T0352)L48.CB, (T0352)M59.CB) [> 4.4474 = 7.4123 < 9.6360] w=0.0124 to align # Constraint # added constraint: constraint((T0352)E46.CB, (T0352)M59.CB) [> 3.7455 = 6.2424 < 8.1152] w=0.0124 to align # Constraint # added constraint: constraint((T0352)W53.CB, (T0352)A74.CB) [> 4.7797 = 7.9661 < 10.3560] w=0.0124 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0352/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0352/decoys/ # ReadConformPDB reading from PDB file chimera-5-3.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-M1-S106-10+HIS.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 Skipped atom 391, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL3.pdb.gz # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 Skipped atom 286, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 290, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 292, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 362, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 364, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 366, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz Skipped atom 368, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 Skipped atom 391, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL3.pdb.gz # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 Skipped atom 286, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 290, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 292, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 362, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 364, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 366, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz Skipped atom 368, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 2 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain '' from PDB file servers/MIG_FROST_AL1.pdb.gz failed---no such chain. # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 44 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 35 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 5 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 28 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 52 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 5 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 44 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 25 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 45 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0352)A108.O and (T0352)S109.N only 0.000 apart, marking (T0352)S109.N as missing # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0352)T44.O and (T0352)M45.N only 0.000 apart, marking (T0352)M45.N as missing WARNING: atoms too close: (T0352)W53.O and (T0352)V54.N only 0.000 apart, marking (T0352)V54.N as missing # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # Found a chain break before 17 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/panther3_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0352)Q89.N and (T0352)R90.N only 0.000 apart, marking (T0352)R90.N as missing WARNING: atoms too close: (T0352)Q89.CA and (T0352)R90.CA only 0.000 apart, marking (T0352)R90.CA as missing WARNING: atoms too close: (T0352)Q89.O and (T0352)R90.O only 0.000 apart, marking (T0352)R90.O as missing WARNING: atoms too close: (T0352)Q89.C and (T0352)R90.C only 0.000 apart, marking (T0352)R90.C as missing # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation panther3_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 255 model score 1.6423 model score 1.6053 model score 2.1673 model score 2.1204 model score 1.8922 model score 2.0819 model score 1.9545 model score 1.5596 model score 1.6099 model score 2.1724 model score 2.2431 model score 2.2483 model score 2.0446 model score 1.5660 model score 2.0883 model score 2.2431 model score 1.2438 model score 2.2501 model score 1.2667 model score 2.0637 model score 2.0534 model score 1.2438 model score 1.2667 model score 1.2913 model score 1.1884 model score 1.2938 model score 2.1673 model score 1.9813 model score 2.2126 model score 2.1461 model score 2.1355 model score 2.0995 model score 1.9334 model score 1.3915 model score 1.4297 model score 1.4804 model score 1.3363 model score 1.2604 model score 1.5506 model score 1.2529 model score 1.5631 model score 1.9601 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.6820 model score 1.9887 model score 1.9201 model score 1.9141 model score 1.6814 model score 1.6440 model score 1.2860 model score 1.2860 model score 1.5036 model score 1.6911 model score 1.9381 model score 1.9386 model score 2.2649 model score 2.5212 model score 1.9616 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.0172 model score 1.8399 model score 1.9176 model score 1.8030 model score 2.0037 model score 1.6089 model score 1.9747 model score 1.7791 model score 1.7901 model score 1.9662 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.4529 model score 1.6921 model score 1.6250 model score 1.9493 model score 1.9252 model score 2.0912 model score 1.6763 model score 2.0589 model score 1.7431 model score 1.6552 model score 2.0292 model score 1.9771 model score 2.2391 model score 2.2391 model score 2.0987 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.8065 model score 1.8708 model score 1.6549 model score 1.5999 model score 1.5112 model score 2.2853 model score 1.4957 model score 1.2190 model score 2.4048 model score 1.4839 model score 1.8652 model score 1.2238 model score 1.5718 model score 2.1301 model score 1.9046 model score 1.9935 model score 1.1324 model score 1.2292 model score 1.1822 model score 1.4120 model score 1.1663 model score 1.8641 model score 1.6938 model score 1.5984 model score 1.8428 model score 1.7275 model score 1.5918 model score 1.2622 model score 1.4220 model score 1.6203 model score 1.5031 model score 1.7285 model score 2.1065 model score 2.1174 model score 1.3260 model score 1.8640 model score 1.3889 model score 2.1454 model score 1.9390 model score 2.1484 model score 2.0485 model score 1.9083 model score 1.5268 model score 2.2315 model score 2.0218 model score 1.7162 model score 1.8950 model score 1.6714 model score 1.3378 model score 1.6369 model score 1.5230 model score 1.9083 model score 1.9083 model score 1.5127 model score 1.4776 model score 2.1058 model score 1.3519 model score 2.0087 model score 1.9816 model score 1.5359 model score 2.5383 model score 2.1645 model score 2.0216 model score 1.9663 model score 1.3881 model score 2.5446 model score 2.1340 model score 2.0067 model score 1.7007 model score 1.6369 model score 2.1484 model score 1.4681 model score 1.5397 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.6860 model score 1.2308 model score 1.9081 model score 1.4376 model score 1.3949 model score 1.9335 model score 1.5591 model score 2.1609 model score 1.9422 model score 1.5127 model score 1.5773 model score 2.1369 model score 1.5364 model score 1.6724 model score 1.6412 model score 1.8641 model score 1.2768 model score 1.9701 model score 2.0517 model score 2.0921 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.7694 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.0418 model score 1.1143 model score 1.0246 model score 1.1626 model score 1.2459 model score 1.7681 model score 1.8701 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.7172 model score 1.8674 model score 2.1932 model score 2.0167 model score 1.9649 model score 2.1649 model score 2.0520 model score 1.8298 model score 2.0119 model score 1.9541 model score 1.4973 model score 1.5825 model score 1.5128 model score 2.0086 model score 1.6765 model score 2.1812 model score 2.1728 model score 2.1936 model score 2.0754 model score 2.1522 model score 1.8172 model score 1.6022 model score 2.1055 model score 1.4418 model score 1.8086 model score 1.4730 model score 1.2771 model score 1.3594 model score 2.2269 weight: 0.6343 eval: 1.6423 min: 1.0246 max: 2.5446 weight: 0.6562 eval: 1.6053 min: 1.0246 max: 2.5446 weight: 0.3234 eval: 2.1673 min: 1.0246 max: 2.5446 weight: 0.3512 eval: 2.1204 min: 1.0246 max: 2.5446 weight: 0.4863 eval: 1.8922 min: 1.0246 max: 2.5446 weight: 0.3740 eval: 2.0819 min: 1.0246 max: 2.5446 weight: 0.4494 eval: 1.9545 min: 1.0246 max: 2.5446 weight: 0.6832 eval: 1.5596 min: 1.0246 max: 2.5446 weight: 0.6534 eval: 1.6099 min: 1.0246 max: 2.5446 weight: 0.3204 eval: 2.1724 min: 1.0246 max: 2.5446 weight: 0.2785 eval: 2.2431 min: 1.0246 max: 2.5446 weight: 0.2754 eval: 2.2483 min: 1.0246 max: 2.5446 weight: 0.3961 eval: 2.0446 min: 1.0246 max: 2.5446 weight: 0.6794 eval: 1.5660 min: 1.0246 max: 2.5446 weight: 0.3702 eval: 2.0883 min: 1.0246 max: 2.5446 weight: 0.2785 eval: 2.2431 min: 1.0246 max: 2.5446 weight: 0.8702 eval: 1.2438 min: 1.0246 max: 2.5446 weight: 0.2744 eval: 2.2501 min: 1.0246 max: 2.5446 weight: 0.8566 eval: 1.2667 min: 1.0246 max: 2.5446 weight: 0.3847 eval: 2.0637 min: 1.0246 max: 2.5446 weight: 0.3909 eval: 2.0534 min: 1.0246 max: 2.5446 weight: 0.8702 eval: 1.2438 min: 1.0246 max: 2.5446 weight: 0.8566 eval: 1.2667 min: 1.0246 max: 2.5446 weight: 0.8421 eval: 1.2913 min: 1.0246 max: 2.5446 weight: 0.9030 eval: 1.1884 min: 1.0246 max: 2.5446 weight: 0.8406 eval: 1.2938 min: 1.0246 max: 2.5446 weight: 0.3234 eval: 2.1673 min: 1.0246 max: 2.5446 weight: 0.4335 eval: 1.9813 min: 1.0246 max: 2.5446 weight: 0.2966 eval: 2.2126 min: 1.0246 max: 2.5446 weight: 0.3360 eval: 2.1461 min: 1.0246 max: 2.5446 weight: 0.3422 eval: 2.1355 min: 1.0246 max: 2.5446 weight: 0.3636 eval: 2.0995 min: 1.0246 max: 2.5446 weight: 0.4619 eval: 1.9334 min: 1.0246 max: 2.5446 weight: 0.7828 eval: 1.3915 min: 1.0246 max: 2.5446 weight: 0.7601 eval: 1.4297 min: 1.0246 max: 2.5446 weight: 0.7301 eval: 1.4804 min: 1.0246 max: 2.5446 weight: 0.8154 eval: 1.3363 min: 1.0246 max: 2.5446 weight: 0.8604 eval: 1.2604 min: 1.0246 max: 2.5446 weight: 0.6886 eval: 1.5506 min: 1.0246 max: 2.5446 weight: 0.8648 eval: 1.2529 min: 1.0246 max: 2.5446 weight: 0.6812 eval: 1.5631 min: 1.0246 max: 2.5446 weight: 0.4461 eval: 1.9601 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.6107 eval: 1.6820 min: 1.0246 max: 2.5446 weight: 0.4291 eval: 1.9887 min: 1.0246 max: 2.5446 weight: 0.4698 eval: 1.9201 min: 1.0246 max: 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weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.4123 eval: 2.0172 min: 1.0246 max: 2.5446 weight: 0.5173 eval: 1.8399 min: 1.0246 max: 2.5446 weight: 0.4712 eval: 1.9176 min: 1.0246 max: 2.5446 weight: 0.5391 eval: 1.8030 min: 1.0246 max: 2.5446 weight: 0.4203 eval: 2.0037 min: 1.0246 max: 2.5446 weight: 0.6540 eval: 1.6089 min: 1.0246 max: 2.5446 weight: 0.4374 eval: 1.9747 min: 1.0246 max: 2.5446 weight: 0.5532 eval: 1.7791 min: 1.0246 max: 2.5446 weight: 0.5467 eval: 1.7901 min: 1.0246 max: 2.5446 weight: 0.4425 eval: 1.9662 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.1543 eval: 2.4529 min: 1.0246 max: 2.5446 weight: 0.6048 eval: 1.6921 min: 1.0246 max: 2.5446 weight: 0.6445 eval: 1.6250 min: 1.0246 max: 2.5446 weight: 0.4525 eval: 1.9493 min: 1.0246 max: 2.5446 weight: 0.4668 eval: 1.9252 min: 1.0246 max: 2.5446 weight: 0.3684 eval: 2.0912 min: 1.0246 max: 2.5446 weight: 0.6141 eval: 1.6763 min: 1.0246 max: 2.5446 weight: 0.3876 eval: 2.0589 min: 1.0246 max: 2.5446 weight: 0.5746 eval: 1.7431 min: 1.0246 max: 2.5446 weight: 0.6266 eval: 1.6552 min: 1.0246 max: 2.5446 weight: 0.4052 eval: 2.0292 min: 1.0246 max: 2.5446 weight: 0.4360 eval: 1.9771 min: 1.0246 max: 2.5446 weight: 0.2809 eval: 2.2391 min: 1.0246 max: 2.5446 weight: 0.2809 eval: 2.2391 min: 1.0246 max: 2.5446 weight: 0.3640 eval: 2.0987 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.5370 eval: 1.8065 min: 1.0246 max: 2.5446 weight: 0.4990 eval: 1.8708 min: 1.0246 max: 2.5446 weight: 0.6268 eval: 1.6549 min: 1.0246 max: 2.5446 weight: 0.6594 eval: 1.5999 min: 1.0246 max: 2.5446 weight: 0.7119 eval: 1.5112 min: 1.0246 max: 2.5446 weight: 0.2535 eval: 2.2853 min: 1.0246 max: 2.5446 weight: 0.7211 eval: 1.4957 min: 1.0246 max: 2.5446 weight: 0.8849 eval: 1.2190 min: 1.0246 max: 2.5446 weight: 0.1828 eval: 2.4048 min: 1.0246 max: 2.5446 weight: 0.7280 eval: 1.4839 min: 1.0246 max: 2.5446 weight: 0.5022 eval: 1.8652 min: 1.0246 max: 2.5446 weight: 0.8820 eval: 1.2238 min: 1.0246 max: 2.5446 weight: 0.6760 eval: 1.5718 min: 1.0246 max: 2.5446 weight: 0.3454 eval: 2.1301 min: 1.0246 max: 2.5446 weight: 0.4789 eval: 1.9046 min: 1.0246 max: 2.5446 weight: 0.4263 eval: 1.9935 min: 1.0246 max: 2.5446 weight: 0.9361 eval: 1.1324 min: 1.0246 max: 2.5446 weight: 0.8789 eval: 1.2292 min: 1.0246 max: 2.5446 weight: 0.9067 eval: 1.1822 min: 1.0246 max: 2.5446 weight: 0.7706 eval: 1.4120 min: 1.0246 max: 2.5446 weight: 0.9161 eval: 1.1663 min: 1.0246 max: 2.5446 weight: 0.5029 eval: 1.8641 min: 1.0246 max: 2.5446 weight: 0.6038 eval: 1.6938 min: 1.0246 max: 2.5446 weight: 0.6602 eval: 1.5984 min: 1.0246 max: 2.5446 weight: 0.5155 eval: 1.8428 min: 1.0246 max: 2.5446 weight: 0.5838 eval: 1.7275 min: 1.0246 max: 2.5446 weight: 0.6642 eval: 1.5918 min: 1.0246 max: 2.5446 weight: 0.8593 eval: 1.2622 min: 1.0246 max: 2.5446 weight: 0.7647 eval: 1.4220 min: 1.0246 max: 2.5446 weight: 0.6473 eval: 1.6203 min: 1.0246 max: 2.5446 weight: 0.7167 eval: 1.5031 min: 1.0246 max: 2.5446 weight: 0.5832 eval: 1.7285 min: 1.0246 max: 2.5446 weight: 0.3594 eval: 2.1065 min: 1.0246 max: 2.5446 weight: 0.3529 eval: 2.1174 min: 1.0246 max: 2.5446 weight: 0.8215 eval: 1.3260 min: 1.0246 max: 2.5446 weight: 0.5030 eval: 1.8640 min: 1.0246 max: 2.5446 weight: 0.7843 eval: 1.3889 min: 1.0246 max: 2.5446 weight: 0.3364 eval: 2.1454 min: 1.0246 max: 2.5446 weight: 0.4586 eval: 1.9390 min: 1.0246 max: 2.5446 weight: 0.3346 eval: 2.1484 min: 1.0246 max: 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weight: 0.6973 eval: 1.5359 min: 1.0246 max: 2.5446 weight: 0.1037 eval: 2.5383 min: 1.0246 max: 2.5446 weight: 0.3251 eval: 2.1645 min: 1.0246 max: 2.5446 weight: 0.4097 eval: 2.0216 min: 1.0246 max: 2.5446 weight: 0.4424 eval: 1.9663 min: 1.0246 max: 2.5446 weight: 0.7848 eval: 1.3881 min: 1.0246 max: 2.5446 weight: 0.1000 eval: 2.5446 min: 1.0246 max: 2.5446 weight: 0.3431 eval: 2.1340 min: 1.0246 max: 2.5446 weight: 0.4185 eval: 2.0067 min: 1.0246 max: 2.5446 weight: 0.5996 eval: 1.7007 min: 1.0246 max: 2.5446 weight: 0.6374 eval: 1.6369 min: 1.0246 max: 2.5446 weight: 0.3346 eval: 2.1484 min: 1.0246 max: 2.5446 weight: 0.7374 eval: 1.4681 min: 1.0246 max: 2.5446 weight: 0.6950 eval: 1.5397 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.6084 eval: 1.6860 min: 1.0246 max: 2.5446 weight: 0.8779 eval: 1.2308 min: 1.0246 max: 2.5446 weight: 0.4769 eval: 1.9081 min: 1.0246 max: 2.5446 weight: 0.7554 eval: 1.4376 min: 1.0246 max: 2.5446 weight: 0.7807 eval: 1.3949 min: 1.0246 max: 2.5446 weight: 0.4618 eval: 1.9335 min: 1.0246 max: 2.5446 weight: 0.6835 eval: 1.5591 min: 1.0246 max: 2.5446 weight: 0.3272 eval: 2.1609 min: 1.0246 max: 2.5446 weight: 0.4567 eval: 1.9422 min: 1.0246 max: 2.5446 weight: 0.7110 eval: 1.5127 min: 1.0246 max: 2.5446 weight: 0.6727 eval: 1.5773 min: 1.0246 max: 2.5446 weight: 0.3414 eval: 2.1369 min: 1.0246 max: 2.5446 weight: 0.6969 eval: 1.5364 min: 1.0246 max: 2.5446 weight: 0.6164 eval: 1.6724 min: 1.0246 max: 2.5446 weight: 0.6349 eval: 1.6412 min: 1.0246 max: 2.5446 weight: 0.5029 eval: 1.8641 min: 1.0246 max: 2.5446 weight: 0.8507 eval: 1.2768 min: 1.0246 max: 2.5446 weight: 0.4402 eval: 1.9701 min: 1.0246 max: 2.5446 weight: 0.3919 eval: 2.0517 min: 1.0246 max: 2.5446 weight: 0.3679 eval: 2.0921 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.5590 eval: 1.7694 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.9898 eval: 1.0418 min: 1.0246 max: 2.5446 weight: 0.9469 eval: 1.1143 min: 1.0246 max: 2.5446 weight: 1.0000 eval: 1.0246 min: 1.0246 max: 2.5446 weight: 0.9183 eval: 1.1626 min: 1.0246 max: 2.5446 weight: 0.8689 eval: 1.2459 min: 1.0246 max: 2.5446 weight: 0.5597 eval: 1.7681 min: 1.0246 max: 2.5446 weight: 0.4994 eval: 1.8701 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.5899 eval: 1.7172 min: 1.0246 max: 2.5446 weight: 0.5010 eval: 1.8674 min: 1.0246 max: 2.5446 weight: 0.3080 eval: 2.1932 min: 1.0246 max: 2.5446 weight: 0.4126 eval: 2.0167 min: 1.0246 max: 2.5446 weight: 0.4432 eval: 1.9649 min: 1.0246 max: 2.5446 weight: 0.3248 eval: 2.1649 min: 1.0246 max: 2.5446 weight: 0.3916 eval: 2.0520 min: 1.0246 max: 2.5446 weight: 0.5232 eval: 1.8298 min: 1.0246 max: 2.5446 weight: 0.4154 eval: 2.0119 min: 1.0246 max: 2.5446 weight: 0.4497 eval: 1.9541 min: 1.0246 max: 2.5446 weight: 0.7201 eval: 1.4973 min: 1.0246 max: 2.5446 weight: 0.6697 eval: 1.5825 min: 1.0246 max: 2.5446 weight: 0.7109 eval: 1.5128 min: 1.0246 max: 2.5446 weight: 0.4173 eval: 2.0086 min: 1.0246 max: 2.5446 weight: 0.6140 eval: 1.6765 min: 1.0246 max: 2.5446 weight: 0.3152 eval: 2.1812 min: 1.0246 max: 2.5446 weight: 0.3201 eval: 2.1728 min: 1.0246 max: 2.5446 weight: 0.3078 eval: 2.1936 min: 1.0246 max: 2.5446 weight: 0.3778 eval: 2.0754 min: 1.0246 max: 2.5446 weight: 0.3324 eval: 2.1522 min: 1.0246 max: 2.5446 weight: 0.5307 eval: 1.8172 min: 1.0246 max: 2.5446 weight: 0.6580 eval: 1.6022 min: 1.0246 max: 2.5446 weight: 0.3600 eval: 2.1055 min: 1.0246 max: 2.5446 weight: 0.7530 eval: 1.4418 min: 1.0246 max: 2.5446 weight: 0.5358 eval: 1.8086 min: 1.0246 max: 2.5446 weight: 0.7345 eval: 1.4730 min: 1.0246 max: 2.5446 weight: 0.8505 eval: 1.2771 min: 1.0246 max: 2.5446 weight: 0.8017 eval: 1.3594 min: 1.0246 max: 2.5446 weight: 0.2881 eval: 2.2269 min: 1.0246 max: 2.5446 Adding 4961 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -214.7789, CN propb: -214.7789 weights: 0.2454 constraints: 278 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 278 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 278 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 4683 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 4683 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 4961 # command: