# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0350/ # command:# Making conformation for sequence T0350 numbered 1 through 117 Created new target T0350 from T0350.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0350/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0350//projects/compbio/experiments/protein-predict/casp7/T0350/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0350//projects/compbio/experiments/protein-predict/casp7/T0350/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0350/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0350/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0350)F60.CB, (T0350)V71.CB) [> 3.2734 = 5.4557 < 7.0925] w=1.0000 to align # Constraint # added constraint: constraint((T0350)E61.CB, (T0350)V71.CB) [> 4.5893 = 7.6488 < 9.9435] w=0.9403 to align # Constraint # added constraint: constraint((T0350)E61.CB, (T0350)Y70.CB) [> 3.1978 = 5.3296 < 6.9285] w=0.8784 to align # Constraint # added constraint: constraint((T0350)M47.CB, (T0350)F60.CB) [> 3.7033 = 6.1721 < 8.0238] w=0.8718 to align # Constraint # added constraint: constraint((T0350)F60.CB, (T0350)Y70.CB) [> 4.2157 = 7.0262 < 9.1341] w=0.7895 to align # Constraint # added constraint: constraint((T0350)F60.CB, (T0350)K72.CB) [> 4.4889 = 7.4815 < 9.7260] w=0.7602 to align # Constraint # added constraint: constraint((T0350)K59.CB, (T0350)V71.CB) [> 4.3473 = 7.2455 < 9.4191] w=0.7298 to align # Constraint # added constraint: constraint((T0350)L62.CB, (T0350)V71.CB) [> 3.6090 = 6.0150 < 7.8195] w=0.5952 to align # Constraint # added constraint: constraint((T0350)F60.CB, (T0350)V73.CB) [> 3.2588 = 5.4313 < 7.0607] w=0.5952 to align # Constraint # added constraint: constraint((T0350)K59.CB, (T0350)V73.CB) [> 4.2314 = 7.0523 < 9.1680] w=0.5952 to align # Constraint # added constraint: constraint((T0350)L58.CB, (T0350)V73.CB) [> 2.9894 = 4.9824 < 6.4771] w=0.5952 to align # Constraint # added constraint: constraint((T0350)L51.CB, (T0350)F60.CB) [> 4.6413 = 7.7356 < 10.0562] w=0.5556 to align # Constraint # added constraint: constraint((T0350)L50.CB, (T0350)F60.CB) [> 4.5436 = 7.5727 < 9.8445] w=0.4963 to align # Constraint # added constraint: constraint((T0350)L58.CB, (T0350)K72.CB) [> 4.5752 = 7.6253 < 9.9129] w=0.4900 to align # Constraint # added constraint: constraint((T0350)K59.CB, (T0350)K72.CB) [> 3.7470 = 6.2449 < 8.1184] w=0.4900 to align # Constraint # added constraint: constraint((T0350)I82.CB, (T0350)F93.CB) [> 4.5556 = 7.5927 < 9.8705] w=0.4117 to align # Constraint # added constraint: constraint((T0350)F60.CB, (T0350)Y69.CB) [> 3.2009 = 5.3348 < 6.9352] w=0.4048 to align # Constraint # added constraint: constraint((T0350)K59.CB, (T0350)Y70.CB) [> 3.6693 = 6.1155 < 7.9502] w=0.3847 to align # Constraint # added constraint: constraint((T0350)H57.CB, (T0350)I74.CB) [> 3.4719 = 5.7865 < 7.5225] w=0.3847 to align # Constraint # added constraint: constraint((T0350)H57.CB, (T0350)K72.CB) [> 4.4070 = 7.3450 < 9.5485] w=0.3847 to align # Constraint # added constraint: constraint((T0350)V56.CB, (T0350)I74.CB) [> 4.3413 = 7.2354 < 9.4061] w=0.3847 to align # Constraint # added constraint: constraint((T0350)V56.CB, (T0350)V73.CB) [> 4.7696 = 7.9493 < 10.3341] w=0.3847 to align # Constraint # added constraint: constraint((T0350)Q55.CB, (T0350)I74.CB) [> 4.3752 = 7.2920 < 9.4796] w=0.3847 to align # Constraint # added constraint: constraint((T0350)A41.CB, (T0350)L62.CB) [> 4.0314 = 6.7189 < 8.7346] w=0.3755 to align # Constraint # added constraint: constraint((T0350)V44.CB, (T0350)F60.CB) [> 3.3096 = 5.5159 < 7.1707] w=0.3755 to align # Constraint # added constraint: constraint((T0350)L58.CB, (T0350)V71.CB) [> 3.6723 = 6.1205 < 7.9567] w=0.3451 to align # Constraint # added constraint: constraint((T0350)M43.CB, (T0350)L62.CB) [> 3.5329 = 5.8881 < 7.6546] w=0.3364 to align # Constraint # added constraint: constraint((T0350)E61.CB, (T0350)K72.CB) [> 3.6243 = 6.0405 < 7.8526] w=0.3158 to align # Constraint # added constraint: constraint((T0350)V44.CB, (T0350)V71.CB) [> 3.5602 = 5.9337 < 7.7138] w=0.3078 to align # Constraint # added constraint: constraint((T0350)M47.CB, (T0350)Y69.CB) [> 3.9487 = 6.5812 < 8.5555] w=0.2995 to align # Constraint # added constraint: constraint((T0350)Y37.CB, (T0350)A96.CB) [> 2.4959 = 4.1598 < 5.4077] w=0.2744 to align # Constraint # added constraint: constraint((T0350)V35.CB, (T0350)L62.CB) [> 4.2972 = 7.1620 < 9.3107] w=0.2565 to align # Constraint # added constraint: constraint((T0350)V35.CB, (T0350)Y69.CB) [> 4.7792 = 7.9654 < 10.3550] w=0.2565 to align # Constraint # added constraint: constraint((T0350)E46.CB, (T0350)H63.CB) [> 4.7249 = 7.8748 < 10.2373] w=0.2565 to align # Constraint # added constraint: constraint((T0350)L50.CB, (T0350)Y69.CB) [> 3.4252 = 5.7087 < 7.4213] w=0.2398 to align # Constraint # added constraint: constraint((T0350)H57.CB, (T0350)E75.CB) [> 3.5164 = 5.8607 < 7.6189] w=0.2105 to align # Constraint # added constraint: constraint((T0350)L58.CB, (T0350)I74.CB) [> 3.7703 = 6.2838 < 8.1690] w=0.2105 to align # Constraint # added constraint: constraint((T0350)L58.CB, (T0350)E75.CB) [> 3.1250 = 5.2083 < 6.7708] w=0.2105 to align # Constraint # added constraint: constraint((T0350)L58.CB, (T0350)D76.CB) [> 3.9863 = 6.6438 < 8.6369] w=0.2105 to align # Constraint # added constraint: constraint((T0350)K59.CB, (T0350)I74.CB) [> 3.3830 = 5.6383 < 7.3298] w=0.2105 to align # Constraint # added constraint: constraint((T0350)F93.CB, (T0350)F104.CB) [> 3.6272 = 6.0454 < 7.8590] w=0.2105 to align # Constraint # added constraint: constraint((T0350)Q34.CB, (T0350)M43.CB) [> 2.8738 = 4.7896 < 6.2265] w=0.1945 to align # Constraint # added constraint: constraint((T0350)L40.CB, (T0350)L62.CB) [> 3.1732 = 5.2887 < 6.8752] w=0.1879 to align # Constraint # added constraint: constraint((T0350)E75.CB, (T0350)L103.CB) [> 4.7267 = 7.8779 < 10.2413] w=0.1599 to align # Constraint # added constraint: constraint((T0350)V73.CB, (T0350)F104.CB) [> 4.3695 = 7.2825 < 9.4672] w=0.1599 to align # Constraint # added constraint: constraint((T0350)V73.CB, (T0350)L103.CB) [> 4.7852 = 7.9753 < 10.3680] w=0.1599 to align # Constraint # added constraint: constraint((T0350)V73.CB, (T0350)F100.CB) [> 2.6895 = 4.4826 < 5.8274] w=0.1599 to align # Constraint # added constraint: constraint((T0350)L40.CB, (T0350)N67.CB) [> 3.6148 = 6.0247 < 7.8321] w=0.1569 to align # Constraint # added constraint: constraint((T0350)L40.CB, (T0350)Y69.CB) [> 3.6619 = 6.1031 < 7.9341] w=0.1569 to align # Constraint # added constraint: constraint((T0350)M43.CB, (T0350)Y69.CB) [> 3.9758 = 6.6264 < 8.6143] w=0.1396 to align # Constraint # added constraint: constraint((T0350)L58.CB, (T0350)V81.CB) [> 3.9267 = 6.5444 < 8.5078] w=0.1372 to align # Constraint # added constraint: constraint((T0350)L40.CB, (T0350)H57.CB) [> 4.6206 = 7.7009 < 10.0112] w=0.1372 to align # Constraint # added constraint: constraint((T0350)V30.CB, (T0350)K59.CB) [> 3.5902 = 5.9837 < 7.7788] w=0.1282 to align # Constraint # added constraint: constraint((T0350)V30.CB, (T0350)Y70.CB) [> 2.4940 = 4.1566 < 5.4036] w=0.1282 to align # Constraint # added constraint: constraint((T0350)V30.CB, (T0350)V71.CB) [> 3.4626 = 5.7710 < 7.5023] w=0.1282 to align # Constraint # added constraint: constraint((T0350)Q34.CB, (T0350)Y70.CB) [> 4.0191 = 6.6985 < 8.7080] w=0.1282 to align # Constraint # added constraint: constraint((T0350)N39.CB, (T0350)L62.CB) [> 4.7968 = 7.9946 < 10.3930] w=0.1282 to align # Constraint # added constraint: constraint((T0350)Y37.CB, (T0350)Y69.CB) [> 3.6447 = 6.0745 < 7.8968] w=0.0972 to align # Constraint # added constraint: constraint((T0350)L40.CB, (T0350)E61.CB) [> 4.6092 = 7.6820 < 9.9866] w=0.0972 to align # Constraint # added constraint: constraint((T0350)L40.CB, (T0350)H63.CB) [> 1.9583 = 3.2638 < 4.2430] w=0.0972 to align # Constraint # added constraint: constraint((T0350)L40.CB, (T0350)L66.CB) [> 4.0480 = 6.7466 < 8.7706] w=0.0972 to align # Constraint # added constraint: constraint((T0350)L40.CB, (T0350)V71.CB) [> 4.1061 = 6.8435 < 8.8966] w=0.0972 to align # Constraint # added constraint: constraint((T0350)V35.CB, (T0350)H63.CB) [> 4.7363 = 7.8939 < 10.2620] w=0.0972 to align # Constraint # added constraint: constraint((T0350)Y70.CB, (T0350)M97.CB) [> 3.1286 = 5.2143 < 6.7786] w=0.0972 to align # Constraint # added constraint: constraint((T0350)Y70.CB, (T0350)A96.CB) [> 4.5027 = 7.5044 < 9.7558] w=0.0972 to align # Constraint # added constraint: constraint((T0350)Y70.CB, (T0350)F93.CB) [> 3.2893 = 5.4822 < 7.1268] w=0.0972 to align # Constraint # added constraint: constraint((T0350)E68.CB, (T0350)D92.CB) [> 4.3928 = 7.3213 < 9.5177] w=0.0972 to align # Constraint # added constraint: constraint((T0350)E68.CB, (T0350)R89.CB) [> 1.8459 = 3.0766 < 3.9995] w=0.0972 to align # Constraint # added constraint: constraint((T0350)L66.CB, (T0350)W90.CB) [> 3.7580 = 6.2633 < 8.1423] w=0.0972 to align # Constraint # added constraint: constraint((T0350)F60.CB, (T0350)M97.CB) [> 3.5735 = 5.9559 < 7.7426] w=0.0972 to align # Constraint # added constraint: constraint((T0350)L62.CB, (T0350)W90.CB) [> 3.0630 = 5.1050 < 6.6365] w=0.0972 to align # Constraint # added constraint: constraint((T0350)L62.CB, (T0350)Y94.CB) [> 3.2580 = 5.4301 < 7.0591] w=0.0972 to align # Constraint # added constraint: constraint((T0350)L62.CB, (T0350)M97.CB) [> 4.5205 = 7.5342 < 9.7944] w=0.0972 to align # Constraint # added constraint: constraint((T0350)H63.CB, (T0350)W90.CB) [> 4.3620 = 7.2700 < 9.4510] w=0.0972 to align # Constraint # added constraint: constraint((T0350)L66.CB, (T0350)P87.CB) [> 3.6775 = 6.1292 < 7.9679] w=0.0972 to align # Constraint # added constraint: constraint((T0350)E68.CB, (T0350)I82.CB) [> 4.4645 = 7.4408 < 9.6730] w=0.0889 to align # Constraint # added constraint: constraint((T0350)V71.CB, (T0350)I85.CB) [> 2.4534 = 4.0890 < 5.3156] w=0.0889 to align # Constraint # added constraint: constraint((T0350)V71.CB, (T0350)P86.CB) [> 4.7192 = 7.8654 < 10.2250] w=0.0889 to align # Constraint # added constraint: constraint((T0350)K72.CB, (T0350)V81.CB) [> 3.3204 = 5.5340 < 7.1942] w=0.0889 to align # Constraint # added constraint: constraint((T0350)K72.CB, (T0350)I85.CB) [> 4.4445 = 7.4075 < 9.6297] w=0.0889 to align # Constraint # added constraint: constraint((T0350)V73.CB, (T0350)I82.CB) [> 3.1588 = 5.2646 < 6.8440] w=0.0889 to align # Constraint # added constraint: constraint((T0350)V73.CB, (T0350)R83.CB) [> 2.8577 = 4.7628 < 6.1916] w=0.0889 to align # Constraint # added constraint: constraint((T0350)T98.CB, (T0350)K109.CB) [> 2.8116 = 4.6860 < 6.0917] w=0.0799 to align # Constraint # added constraint: constraint((T0350)L51.CB, (T0350)F93.CB) [> 4.4480 = 7.4134 < 9.6374] w=0.0597 to align # Constraint # added constraint: constraint((T0350)L50.CB, (T0350)F93.CB) [> 3.9153 = 6.5255 < 8.4832] w=0.0597 to align # Constraint # added constraint: constraint((T0350)M47.CB, (T0350)Y94.CB) [> 4.3542 = 7.2571 < 9.4342] w=0.0597 to align # Constraint # added constraint: constraint((T0350)L40.CB, (T0350)E68.CB) [> 4.1819 = 6.9698 < 9.0607] w=0.0597 to align # Constraint # added constraint: constraint((T0350)L40.CB, (T0350)D64.CB) [> 4.5455 = 7.5759 < 9.8486] w=0.0597 to align # Constraint # added constraint: constraint((T0350)V71.CB, (T0350)Y94.CB) [> 3.7940 = 6.3234 < 8.2204] w=0.0597 to align # Constraint # added constraint: constraint((T0350)V73.CB, (T0350)P87.CB) [> 3.5090 = 5.8484 < 7.6029] w=0.0597 to align # Constraint # added constraint: constraint((T0350)V73.CB, (T0350)W90.CB) [> 2.4564 = 4.0939 < 5.3221] w=0.0597 to align # Constraint # added constraint: constraint((T0350)I74.CB, (T0350)P86.CB) [> 2.2828 = 3.8047 < 4.9461] w=0.0597 to align # Constraint # added constraint: constraint((T0350)S77.CB, (T0350)P87.CB) [> 4.2574 = 7.0956 < 9.2243] w=0.0597 to align # Constraint # added constraint: constraint((T0350)I20.CB, (T0350)V44.CB) [> 3.6251 = 6.0419 < 7.8545] w=0.0412 to align # Constraint # added constraint: constraint((T0350)I20.CB, (T0350)M47.CB) [> 4.1663 = 6.9438 < 9.0270] w=0.0412 to align # Constraint # added constraint: constraint((T0350)W13.CB, (T0350)V44.CB) [> 2.9856 = 4.9759 < 6.4687] w=0.0274 to align # Constraint # added constraint: constraint((T0350)W13.CB, (T0350)N48.CB) [> 3.8798 = 6.4663 < 8.4062] w=0.0274 to align # Constraint # added constraint: constraint((T0350)Y16.CB, (T0350)M43.CB) [> 4.5225 = 7.5375 < 9.7987] w=0.0274 to align # Constraint # added constraint: constraint((T0350)Y16.CB, (T0350)M47.CB) [> 3.5367 = 5.8945 < 7.6628] w=0.0274 to align # Constraint # added constraint: constraint((T0350)D17.CB, (T0350)L40.CB) [> 3.5357 = 5.8929 < 7.6607] w=0.0274 to align # Constraint # added constraint: constraint((T0350)I20.CB, (T0350)L40.CB) [> 3.2089 = 5.3482 < 6.9526] w=0.0274 to align # Constraint # added constraint: constraint((T0350)H21.CB, (T0350)L40.CB) [> 3.7524 = 6.2540 < 8.1302] w=0.0274 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0350/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0350/decoys/ # ReadConformPDB reading from PDB file T0350.edit13.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0350.edit4.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 20 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 23 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 9 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 20 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain '' from PDB file servers/MIG_FROST_AL1.pdb.gz failed---no such chain. # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 44 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 107 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 Skipped atom 22, because occupancy 1 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 24, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 26, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 28, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 166, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 168, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 170, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 172, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 226, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 228, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 230, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 232, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0350)D106.O and (T0350)E107.N only 0.000 apart, marking (T0350)E107.N as missing # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0350)Y70.O and (T0350)V71.N only 0.000 apart, marking (T0350)V71.N as missing # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0350)M97.N and (T0350)T98.N only 0.000 apart, marking (T0350)T98.N as missing WARNING: atoms too close: (T0350)M97.CA and (T0350)T98.CA only 0.000 apart, marking (T0350)T98.CA as missing WARNING: atoms too close: (T0350)M97.CB and (T0350)T98.CB only 0.000 apart, marking (T0350)T98.CB as missing WARNING: atoms too close: (T0350)M97.CG and (T0350)T98.CG2 only 0.000 apart, marking (T0350)T98.CG2 as missing WARNING: atoms too close: (T0350)M97.O and (T0350)T98.O only 0.000 apart, marking (T0350)T98.O as missing WARNING: atoms too close: (T0350)M97.C and (T0350)T98.C only 0.000 apart, marking (T0350)T98.C as missing WARNING: atoms too close: (T0350)T98.N and (T0350)E99.N only 0.000 apart, marking (T0350)T98.N as missing WARNING: atoms too close: (T0350)M97.N and (T0350)E99.N only 0.000 apart, marking (T0350)E99.N as missing WARNING: atoms too close: (T0350)T98.CA and (T0350)E99.CA only 0.000 apart, marking (T0350)E99.CA as missing WARNING: atoms too close: (T0350)M97.CA and (T0350)E99.CA only 0.000 apart, marking (T0350)E99.CA as missing WARNING: atoms too close: (T0350)T98.CB and (T0350)E99.CB only 0.000 apart, marking (T0350)E99.CB as missing WARNING: atoms too close: (T0350)M97.CB and (T0350)E99.CB only 0.000 apart, marking (T0350)E99.CB as missing WARNING: atoms too close: (T0350)T98.CG2 and (T0350)E99.CG only 0.000 apart, marking (T0350)E99.CG as missing WARNING: atoms too close: (T0350)M97.CG and (T0350)E99.CG only 0.000 apart, marking (T0350)E99.CG as missing WARNING: atoms too close: (T0350)T98.O and (T0350)E99.O only 0.000 apart, marking (T0350)E99.O as missing WARNING: atoms too close: (T0350)M97.O and (T0350)E99.O only 0.000 apart, marking (T0350)E99.O as missing WARNING: atoms too close: (T0350)T98.C and (T0350)E99.C only 0.000 apart, marking (T0350)E99.C as missing WARNING: atoms too close: (T0350)M97.C and (T0350)E99.C only 0.000 apart, marking (T0350)E99.C as missing WARNING: atoms too close: (T0350)E99.N and (T0350)F100.N only 0.000 apart, marking (T0350)E99.N as missing WARNING: atoms too close: (T0350)T98.N and (T0350)F100.N only 0.000 apart, marking (T0350)T98.N as missing WARNING: atoms too close: (T0350)M97.N and (T0350)F100.N only 0.000 apart, marking (T0350)F100.N as missing WARNING: atoms too close: (T0350)E99.CA and (T0350)F100.CA only 0.000 apart, marking (T0350)F100.CA as missing WARNING: atoms too close: (T0350)T98.CA and (T0350)F100.CA only 0.000 apart, marking (T0350)F100.CA as missing WARNING: atoms too close: (T0350)M97.CA and (T0350)F100.CA only 0.000 apart, marking (T0350)F100.CA as missing WARNING: atoms too close: (T0350)E99.CB and (T0350)F100.CB only 0.000 apart, marking (T0350)F100.CB as missing WARNING: atoms too close: (T0350)T98.CB and (T0350)F100.CB only 0.000 apart, marking (T0350)F100.CB as missing WARNING: atoms too close: (T0350)M97.CB and (T0350)F100.CB only 0.000 apart, marking (T0350)F100.CB as missing WARNING: atoms too close: (T0350)E99.CG and (T0350)F100.CG only 0.000 apart, marking (T0350)F100.CG as missing WARNING: atoms too close: (T0350)T98.CG2 and (T0350)F100.CG only 0.000 apart, marking (T0350)F100.CG as missing WARNING: atoms too close: (T0350)M97.CG and (T0350)F100.CG only 0.000 apart, marking (T0350)F100.CG as missing WARNING: atoms too close: (T0350)E99.O and (T0350)F100.O only 0.000 apart, marking (T0350)F100.O as missing WARNING: atoms too close: (T0350)T98.O and (T0350)F100.O only 0.000 apart, marking (T0350)F100.O as missing WARNING: atoms too close: (T0350)M97.O and (T0350)F100.O only 0.000 apart, marking (T0350)F100.O as missing WARNING: atoms too close: (T0350)E99.C and (T0350)F100.C only 0.000 apart, marking (T0350)F100.C as missing WARNING: atoms too close: (T0350)T98.C and (T0350)F100.C only 0.000 apart, marking (T0350)F100.C as missing WARNING: atoms too close: (T0350)M97.C and (T0350)F100.C only 0.000 apart, marking (T0350)F100.C as missing # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/panther3_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation panther3_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0350 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 261 model score 0.3318 model score 0.6550 model score 1.9480 model score 1.6693 model score 1.9533 model score 1.9447 model score 1.9466 model score 1.2856 model score 1.2747 model score 2.2404 model score 1.2587 model score 1.3015 model score 1.9398 model score 1.2900 model score 2.2615 model score 2.3306 model score 2.3813 model score 0.6203 model score 1.7660 model score 0.3677 model score 1.7204 model score 2.1843 model score 0.6203 model score 0.3677 model score 0.4407 model score 0.6430 model score 0.5669 model score 2.1953 model score 1.2295 model score 1.9798 model score 1.2674 model score 1.2629 model score 1.2591 model score 0.9081 model score 0.6497 model score 1.6162 model score 1.4696 model score 0.7700 model score 1.3862 model score 1.2807 model score 1.2824 model score 1.5800 model score 1.4838 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.5500 model score 1.7154 model score 0.8230 model score 1.8483 model score 1.6859 model score 1.6502 model score 0.6575 model score 0.6497 model score 1.6162 model score 1.6694 model score 1.5737 model score 2.0650 model score 2.1782 model score 1.5463 model score 0.3920 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.4149 model score 1.6283 model score 2.4146 model score 1.6098 model score 1.4675 model score 2.0074 model score 2.1945 model score 1.2501 model score 1.7481 model score 1.6984 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.5820 model score 0.7973 model score 1.9038 model score 2.1567 model score 1.6694 model score 1.5841 model score 1.7405 model score 1.2824 model score 2.0098 model score 1.2824 model score 1.6188 model score 2.2405 model score 1.7775 model score 1.7775 model score 2.1953 model score 1.2771 model score 0.7669 model score 2.1302 model score 1.8663 model score 1.2378 model score 0.5563 model score 1.3400 model score 0.6883 model score 1.2815 model score 0.8964 model score 1.0325 model score 0.9278 model score 0.4349 model score 0.6274 model score 0.8989 model score 0.9440 model score 0.8989 model score 0.3211 model score 0.4479 model score 0.5917 model score 0.4506 model score 1.4364 model score 0.3863 model score 0.3911 model score 0.3787 model score 1.2771 model score 1.4611 model score 1.4727 model score 1.6358 model score 2.1291 model score 1.8138 model score 0.3496 model score 0.3609 model score 0.3677 model score 0.3564 model score 0.3533 model score 0.6861 model score 0.7332 model score 0.1613 model score 0.3710 model score 0.3869 model score 0.6791 model score 1.1959 model score 1.5427 model score 1.4545 model score 1.3248 model score 1.3188 model score 1.2677 model score 1.2206 model score 1.9788 model score 1.7042 model score 1.7124 model score 0.1445 model score 0.2615 model score 0.2099 model score 0.2972 model score 0.6791 model score 1.2488 model score 1.9893 model score 2.1102 model score 1.1226 model score 2.4642 model score 0.9816 model score 0.5408 model score 0.5239 model score 0.6162 model score 0.5949 model score 0.9412 model score 0.5173 model score 0.5028 model score 0.5908 model score 0.5550 model score 0.5924 model score 0.2615 model score 0.6598 model score 0.2034 model score 0.6295 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.5652 model score 0.8299 model score 0.4873 model score 1.0762 model score 0.3908 model score 1.5313 model score 0.6289 model score 0.7517 model score 1.2674 model score 1.6377 model score 1.5684 model score 1.4582 model score 1.1054 model score 0.2493 model score 0.7093 model score 1.5799 model score 1.5313 model score 1.6041 model score 0.7517 model score 1.3144 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.7417 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.1497 model score 0.2009 model score 0.2728 model score 0.1412 model score 0.2168 model score 1.1497 model score 1.6971 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.5117 model score 1.2701 model score 0.9875 model score 1.2932 model score 2.3093 model score 1.1703 model score 1.4364 model score 1.6033 model score 1.3882 model score 1.4682 model score 0.6964 model score 0.6830 model score 0.8271 model score 0.4488 model score 0.5294 model score 0.7853 model score 0.6328 model score 1.3507 model score 1.2792 model score 0.7163 model score 1.4051 model score 1.1361 model score 2.3062 model score 1.9396 model score 2.4401 model score 1.9868 model score 1.2431 model score 1.2865 model score 2.1082 weight: 0.9262 eval: 0.3318 min: 0.1412 max: 2.4642 weight: 0.8009 eval: 0.6550 min: 0.1412 max: 2.4642 weight: 0.3000 eval: 1.9480 min: 0.1412 max: 2.4642 weight: 0.4080 eval: 1.6693 min: 0.1412 max: 2.4642 weight: 0.2980 eval: 1.9533 min: 0.1412 max: 2.4642 weight: 0.3013 eval: 1.9447 min: 0.1412 max: 2.4642 weight: 0.3005 eval: 1.9466 min: 0.1412 max: 2.4642 weight: 0.5566 eval: 1.2856 min: 0.1412 max: 2.4642 weight: 0.5609 eval: 1.2747 min: 0.1412 max: 2.4642 weight: 0.1867 eval: 2.2404 min: 0.1412 max: 2.4642 weight: 0.5671 eval: 1.2587 min: 0.1412 max: 2.4642 weight: 0.5505 eval: 1.3015 min: 0.1412 max: 2.4642 weight: 0.3032 eval: 1.9398 min: 0.1412 max: 2.4642 weight: 0.5549 eval: 1.2900 min: 0.1412 max: 2.4642 weight: 0.1785 eval: 2.2615 min: 0.1412 max: 2.4642 weight: 0.1518 eval: 2.3306 min: 0.1412 max: 2.4642 weight: 0.1321 eval: 2.3813 min: 0.1412 max: 2.4642 weight: 0.8144 eval: 0.6203 min: 0.1412 max: 2.4642 weight: 0.3705 eval: 1.7660 min: 0.1412 max: 2.4642 weight: 0.9123 eval: 0.3677 min: 0.1412 max: 2.4642 weight: 0.3882 eval: 1.7204 min: 0.1412 max: 2.4642 weight: 0.2084 eval: 2.1843 min: 0.1412 max: 2.4642 weight: 0.8144 eval: 0.6203 min: 0.1412 max: 2.4642 weight: 0.9123 eval: 0.3677 min: 0.1412 max: 2.4642 weight: 0.8840 eval: 0.4407 min: 0.1412 max: 2.4642 weight: 0.8056 eval: 0.6430 min: 0.1412 max: 2.4642 weight: 0.8351 eval: 0.5669 min: 0.1412 max: 2.4642 weight: 0.2042 eval: 2.1953 min: 0.1412 max: 2.4642 weight: 0.5784 eval: 1.2295 min: 0.1412 max: 2.4642 weight: 0.2877 eval: 1.9798 min: 0.1412 max: 2.4642 weight: 0.5637 eval: 1.2674 min: 0.1412 max: 2.4642 weight: 0.5654 eval: 1.2629 min: 0.1412 max: 2.4642 weight: 0.5669 eval: 1.2591 min: 0.1412 max: 2.4642 weight: 0.7029 eval: 0.9081 min: 0.1412 max: 2.4642 weight: 0.8030 eval: 0.6497 min: 0.1412 max: 2.4642 weight: 0.4286 eval: 1.6162 min: 0.1412 max: 2.4642 weight: 0.4854 eval: 1.4696 min: 0.1412 max: 2.4642 weight: 0.7564 eval: 0.7700 min: 0.1412 max: 2.4642 weight: 0.5177 eval: 1.3862 min: 0.1412 max: 2.4642 weight: 0.5586 eval: 1.2807 min: 0.1412 max: 2.4642 weight: 0.5579 eval: 1.2824 min: 0.1412 max: 2.4642 weight: 0.4426 eval: 1.5800 min: 0.1412 max: 2.4642 weight: 0.4798 eval: 1.4838 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.4542 eval: 1.5500 min: 0.1412 max: 2.4642 weight: 0.3901 eval: 1.7154 min: 0.1412 max: 2.4642 weight: 0.7359 eval: 0.8230 min: 0.1412 max: 2.4642 weight: 0.3386 eval: 1.8483 min: 0.1412 max: 2.4642 weight: 0.4015 eval: 1.6859 min: 0.1412 max: 2.4642 weight: 0.4154 eval: 1.6502 min: 0.1412 max: 2.4642 weight: 0.8000 eval: 0.6575 min: 0.1412 max: 2.4642 weight: 0.8030 eval: 0.6497 min: 0.1412 max: 2.4642 weight: 0.4286 eval: 1.6162 min: 0.1412 max: 2.4642 weight: 0.4079 eval: 1.6694 min: 0.1412 max: 2.4642 weight: 0.4450 eval: 1.5737 min: 0.1412 max: 2.4642 weight: 0.2547 eval: 2.0650 min: 0.1412 max: 2.4642 weight: 0.2108 eval: 2.1782 min: 0.1412 max: 2.4642 weight: 0.4556 eval: 1.5463 min: 0.1412 max: 2.4642 weight: 0.9028 eval: 0.3920 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.1191 eval: 2.4149 min: 0.1412 max: 2.4642 weight: 0.4239 eval: 1.6283 min: 0.1412 max: 2.4642 weight: 0.1192 eval: 2.4146 min: 0.1412 max: 2.4642 weight: 0.4310 eval: 1.6098 min: 0.1412 max: 2.4642 weight: 0.4862 eval: 1.4675 min: 0.1412 max: 2.4642 weight: 0.2770 eval: 2.0074 min: 0.1412 max: 2.4642 weight: 0.2045 eval: 2.1945 min: 0.1412 max: 2.4642 weight: 0.5704 eval: 1.2501 min: 0.1412 max: 2.4642 weight: 0.3774 eval: 1.7481 min: 0.1412 max: 2.4642 weight: 0.3967 eval: 1.6984 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.4418 eval: 1.5820 min: 0.1412 max: 2.4642 weight: 0.7458 eval: 0.7973 min: 0.1412 max: 2.4642 weight: 0.3171 eval: 1.9038 min: 0.1412 max: 2.4642 weight: 0.2191 eval: 2.1567 min: 0.1412 max: 2.4642 weight: 0.4079 eval: 1.6694 min: 0.1412 max: 2.4642 weight: 0.4410 eval: 1.5841 min: 0.1412 max: 2.4642 weight: 0.3804 eval: 1.7405 min: 0.1412 max: 2.4642 weight: 0.5579 eval: 1.2824 min: 0.1412 max: 2.4642 weight: 0.2761 eval: 2.0098 min: 0.1412 max: 2.4642 weight: 0.5579 eval: 1.2824 min: 0.1412 max: 2.4642 weight: 0.4275 eval: 1.6188 min: 0.1412 max: 2.4642 weight: 0.1867 eval: 2.2405 min: 0.1412 max: 2.4642 weight: 0.3660 eval: 1.7775 min: 0.1412 max: 2.4642 weight: 0.3660 eval: 1.7775 min: 0.1412 max: 2.4642 weight: 0.2042 eval: 2.1953 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.7576 eval: 0.7669 min: 0.1412 max: 2.4642 weight: 0.2294 eval: 2.1302 min: 0.1412 max: 2.4642 weight: 0.3317 eval: 1.8663 min: 0.1412 max: 2.4642 weight: 0.5752 eval: 1.2378 min: 0.1412 max: 2.4642 weight: 0.8392 eval: 0.5563 min: 0.1412 max: 2.4642 weight: 0.5356 eval: 1.3400 min: 0.1412 max: 2.4642 weight: 0.7880 eval: 0.6883 min: 0.1412 max: 2.4642 weight: 0.5582 eval: 1.2815 min: 0.1412 max: 2.4642 weight: 0.7074 eval: 0.8964 min: 0.1412 max: 2.4642 weight: 0.6547 eval: 1.0325 min: 0.1412 max: 2.4642 weight: 0.6953 eval: 0.9278 min: 0.1412 max: 2.4642 weight: 0.8862 eval: 0.4349 min: 0.1412 max: 2.4642 weight: 0.8116 eval: 0.6274 min: 0.1412 max: 2.4642 weight: 0.7065 eval: 0.8989 min: 0.1412 max: 2.4642 weight: 0.6890 eval: 0.9440 min: 0.1412 max: 2.4642 weight: 0.7065 eval: 0.8989 min: 0.1412 max: 2.4642 weight: 0.9303 eval: 0.3211 min: 0.1412 max: 2.4642 weight: 0.8812 eval: 0.4479 min: 0.1412 max: 2.4642 weight: 0.8255 eval: 0.5917 min: 0.1412 max: 2.4642 weight: 0.8802 eval: 0.4506 min: 0.1412 max: 2.4642 weight: 0.4982 eval: 1.4364 min: 0.1412 max: 2.4642 weight: 0.9051 eval: 0.3863 min: 0.1412 max: 2.4642 weight: 0.9032 eval: 0.3911 min: 0.1412 max: 2.4642 weight: 0.9080 eval: 0.3787 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.4887 eval: 1.4611 min: 0.1412 max: 2.4642 weight: 0.4842 eval: 1.4727 min: 0.1412 max: 2.4642 weight: 0.4209 eval: 1.6358 min: 0.1412 max: 2.4642 weight: 0.2299 eval: 2.1291 min: 0.1412 max: 2.4642 weight: 0.3520 eval: 1.8138 min: 0.1412 max: 2.4642 weight: 0.9193 eval: 0.3496 min: 0.1412 max: 2.4642 weight: 0.9149 eval: 0.3609 min: 0.1412 max: 2.4642 weight: 0.9123 eval: 0.3677 min: 0.1412 max: 2.4642 weight: 0.9166 eval: 0.3564 min: 0.1412 max: 2.4642 weight: 0.9178 eval: 0.3533 min: 0.1412 max: 2.4642 weight: 0.7889 eval: 0.6861 min: 0.1412 max: 2.4642 weight: 0.7706 eval: 0.7332 min: 0.1412 max: 2.4642 weight: 0.9922 eval: 0.1613 min: 0.1412 max: 2.4642 weight: 0.9110 eval: 0.3710 min: 0.1412 max: 2.4642 weight: 0.9048 eval: 0.3869 min: 0.1412 max: 2.4642 weight: 0.7916 eval: 0.6791 min: 0.1412 max: 2.4642 weight: 0.5914 eval: 1.1959 min: 0.1412 max: 2.4642 weight: 0.4570 eval: 1.5427 min: 0.1412 max: 2.4642 weight: 0.4912 eval: 1.4545 min: 0.1412 max: 2.4642 weight: 0.5415 eval: 1.3248 min: 0.1412 max: 2.4642 weight: 0.5438 eval: 1.3188 min: 0.1412 max: 2.4642 weight: 0.5636 eval: 1.2677 min: 0.1412 max: 2.4642 weight: 0.5818 eval: 1.2206 min: 0.1412 max: 2.4642 weight: 0.2881 eval: 1.9788 min: 0.1412 max: 2.4642 weight: 0.3945 eval: 1.7042 min: 0.1412 max: 2.4642 weight: 0.3913 eval: 1.7124 min: 0.1412 max: 2.4642 weight: 0.9987 eval: 0.1445 min: 0.1412 max: 2.4642 weight: 0.9534 eval: 0.2615 min: 0.1412 max: 2.4642 weight: 0.9734 eval: 0.2099 min: 0.1412 max: 2.4642 weight: 0.9396 eval: 0.2972 min: 0.1412 max: 2.4642 weight: 0.7916 eval: 0.6791 min: 0.1412 max: 2.4642 weight: 0.5709 eval: 1.2488 min: 0.1412 max: 2.4642 weight: 0.2840 eval: 1.9893 min: 0.1412 max: 2.4642 weight: 0.2372 eval: 2.1102 min: 0.1412 max: 2.4642 weight: 0.6198 eval: 1.1226 min: 0.1412 max: 2.4642 weight: 0.1000 eval: 2.4642 min: 0.1412 max: 2.4642 weight: 0.6744 eval: 0.9816 min: 0.1412 max: 2.4642 weight: 0.8452 eval: 0.5408 min: 0.1412 max: 2.4642 weight: 0.8518 eval: 0.5239 min: 0.1412 max: 2.4642 weight: 0.8160 eval: 0.6162 min: 0.1412 max: 2.4642 weight: 0.8242 eval: 0.5949 min: 0.1412 max: 2.4642 weight: 0.6901 eval: 0.9412 min: 0.1412 max: 2.4642 weight: 0.8543 eval: 0.5173 min: 0.1412 max: 2.4642 weight: 0.8599 eval: 0.5028 min: 0.1412 max: 2.4642 weight: 0.8258 eval: 0.5908 min: 0.1412 max: 2.4642 weight: 0.8397 eval: 0.5550 min: 0.1412 max: 2.4642 weight: 0.8252 eval: 0.5924 min: 0.1412 max: 2.4642 weight: 0.9534 eval: 0.2615 min: 0.1412 max: 2.4642 weight: 0.7991 eval: 0.6598 min: 0.1412 max: 2.4642 weight: 0.9759 eval: 0.2034 min: 0.1412 max: 2.4642 weight: 0.8108 eval: 0.6295 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.8357 eval: 0.5652 min: 0.1412 max: 2.4642 weight: 0.7332 eval: 0.8299 min: 0.1412 max: 2.4642 weight: 0.8659 eval: 0.4873 min: 0.1412 max: 2.4642 weight: 0.6377 eval: 1.0762 min: 0.1412 max: 2.4642 weight: 0.9033 eval: 0.3908 min: 0.1412 max: 2.4642 weight: 0.4615 eval: 1.5313 min: 0.1412 max: 2.4642 weight: 0.8111 eval: 0.6289 min: 0.1412 max: 2.4642 weight: 0.7635 eval: 0.7517 min: 0.1412 max: 2.4642 weight: 0.5637 eval: 1.2674 min: 0.1412 max: 2.4642 weight: 0.4202 eval: 1.6377 min: 0.1412 max: 2.4642 weight: 0.4471 eval: 1.5684 min: 0.1412 max: 2.4642 weight: 0.4897 eval: 1.4582 min: 0.1412 max: 2.4642 weight: 0.6265 eval: 1.1054 min: 0.1412 max: 2.4642 weight: 0.9581 eval: 0.2493 min: 0.1412 max: 2.4642 weight: 0.7799 eval: 0.7093 min: 0.1412 max: 2.4642 weight: 0.4426 eval: 1.5799 min: 0.1412 max: 2.4642 weight: 0.4615 eval: 1.5313 min: 0.1412 max: 2.4642 weight: 0.4332 eval: 1.6041 min: 0.1412 max: 2.4642 weight: 0.7635 eval: 0.7517 min: 0.1412 max: 2.4642 weight: 0.5455 eval: 1.3144 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.7673 eval: 0.7417 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.9967 eval: 0.1497 min: 0.1412 max: 2.4642 weight: 0.9769 eval: 0.2009 min: 0.1412 max: 2.4642 weight: 0.9490 eval: 0.2728 min: 0.1412 max: 2.4642 weight: 1.0000 eval: 0.1412 min: 0.1412 max: 2.4642 weight: 0.9707 eval: 0.2168 min: 0.1412 max: 2.4642 weight: 0.6093 eval: 1.1497 min: 0.1412 max: 2.4642 weight: 0.3972 eval: 1.6971 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.5599 eval: 1.2771 min: 0.1412 max: 2.4642 weight: 0.8565 eval: 0.5117 min: 0.1412 max: 2.4642 weight: 0.5627 eval: 1.2701 min: 0.1412 max: 2.4642 weight: 0.6721 eval: 0.9875 min: 0.1412 max: 2.4642 weight: 0.5537 eval: 1.2932 min: 0.1412 max: 2.4642 weight: 0.1600 eval: 2.3093 min: 0.1412 max: 2.4642 weight: 0.6013 eval: 1.1703 min: 0.1412 max: 2.4642 weight: 0.4982 eval: 1.4364 min: 0.1412 max: 2.4642 weight: 0.4336 eval: 1.6033 min: 0.1412 max: 2.4642 weight: 0.5169 eval: 1.3882 min: 0.1412 max: 2.4642 weight: 0.4859 eval: 1.4682 min: 0.1412 max: 2.4642 weight: 0.7849 eval: 0.6964 min: 0.1412 max: 2.4642 weight: 0.7901 eval: 0.6830 min: 0.1412 max: 2.4642 weight: 0.7343 eval: 0.8271 min: 0.1412 max: 2.4642 weight: 0.8808 eval: 0.4488 min: 0.1412 max: 2.4642 weight: 0.8496 eval: 0.5294 min: 0.1412 max: 2.4642 weight: 0.7505 eval: 0.7853 min: 0.1412 max: 2.4642 weight: 0.8095 eval: 0.6328 min: 0.1412 max: 2.4642 weight: 0.5314 eval: 1.3507 min: 0.1412 max: 2.4642 weight: 0.5591 eval: 1.2792 min: 0.1412 max: 2.4642 weight: 0.7772 eval: 0.7163 min: 0.1412 max: 2.4642 weight: 0.5103 eval: 1.4051 min: 0.1412 max: 2.4642 weight: 0.6146 eval: 1.1361 min: 0.1412 max: 2.4642 weight: 0.1612 eval: 2.3062 min: 0.1412 max: 2.4642 weight: 0.3033 eval: 1.9396 min: 0.1412 max: 2.4642 weight: 0.1094 eval: 2.4401 min: 0.1412 max: 2.4642 weight: 0.2850 eval: 1.9868 min: 0.1412 max: 2.4642 weight: 0.5731 eval: 1.2431 min: 0.1412 max: 2.4642 weight: 0.5563 eval: 1.2865 min: 0.1412 max: 2.4642 weight: 0.2379 eval: 2.1082 min: 0.1412 max: 2.4642 Adding 5119 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -187.5607, CN propb: -187.5607 weights: 0.2464 constraints: 197 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 197 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 197 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 4922 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 4922 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 5119 # command: