# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0345/ # command:# Making conformation for sequence T0345 numbered 1 through 185 Created new target T0345 from T0345.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0345/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0345//projects/compbio/experiments/protein-predict/casp7/T0345/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0345//projects/compbio/experiments/protein-predict/casp7/T0345/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0345/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0345/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)V60.CB) [> 4.2832 = 7.1387 < 9.2803] w=1.0000 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)L59.CB) [> 3.6104 = 6.0174 < 7.8226] w=1.0000 to align # Constraint # added constraint: constraint((T0345)V29.CB, (T0345)V60.CB) [> 2.9785 = 4.9641 < 6.4534] w=1.0000 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)G63.CA) [> 4.3534 = 7.2556 < 9.4323] w=0.9769 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)L62.CB) [> 4.3118 = 7.1863 < 9.3422] w=0.9769 to align # Constraint # added constraint: constraint((T0345)I31.CB, (T0345)L62.CB) [> 3.0038 = 5.0063 < 6.5082] w=0.9769 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)V61.CB) [> 4.0240 = 6.7066 < 8.7186] w=0.9769 to align # Constraint # added constraint: constraint((T0345)V34.CB, (T0345)G63.CA) [> 3.8563 = 6.4271 < 8.3552] w=0.9617 to align # Constraint # added constraint: constraint((T0345)V29.CB, (T0345)L59.CB) [> 4.1994 = 6.9990 < 9.0987] w=0.9615 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)V61.CB) [> 2.9105 = 4.8508 < 6.3060] w=0.9483 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)G63.CA) [> 2.8969 = 4.8281 < 6.2765] w=0.9252 to align # Constraint # added constraint: constraint((T0345)I31.CB, (T0345)G63.CA) [> 3.8115 = 6.3525 < 8.2583] w=0.9252 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)L62.CB) [> 4.2406 = 7.0677 < 9.1880] w=0.9252 to align # Constraint # added constraint: constraint((T0345)V29.CB, (T0345)L62.CB) [> 3.7087 = 6.1811 < 8.0354] w=0.9252 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)F64.CB) [> 3.1515 = 5.2524 < 6.8282] w=0.9180 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)L156.CB) [> 3.5309 = 5.8849 < 7.6504] w=0.9053 to align # Constraint # added constraint: constraint((T0345)V29.CB, (T0345)I157.CB) [> 2.9432 = 4.9053 < 6.3769] w=0.9053 to align # Constraint # added constraint: constraint((T0345)V29.CB, (T0345)V61.CB) [> 4.5506 = 7.5843 < 9.8596] w=0.9024 to align # Constraint # added constraint: constraint((T0345)V34.CB, (T0345)F64.CB) [> 4.3213 = 7.2021 < 9.3628] w=0.9004 to align # Constraint # added constraint: constraint((T0345)I31.CB, (T0345)F155.CB) [> 2.9977 = 4.9961 < 6.4949] w=0.8977 to align # Constraint # added constraint: constraint((T0345)V29.CB, (T0345)G158.CA) [> 3.9014 = 6.5023 < 8.4529] w=0.8874 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)F64.CB) [> 4.1948 = 6.9914 < 9.0888] w=0.8795 to align # Constraint # added constraint: constraint((T0345)I31.CB, (T0345)F64.CB) [> 3.5930 = 5.9884 < 7.7849] w=0.8795 to align # Constraint # added constraint: constraint((T0345)A28.CB, (T0345)R58.CB) [> 3.9664 = 6.6107 < 8.5940] w=0.8617 to align # Constraint # added constraint: constraint((T0345)I31.CB, (T0345)I157.CB) [> 4.0957 = 6.8262 < 8.8741] w=0.8599 to align # Constraint # added constraint: constraint((T0345)V34.CB, (T0345)P65.CB) [> 3.4115 = 5.6858 < 7.3915] w=0.8588 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)F155.CB) [> 4.2216 = 7.0360 < 9.1469] w=0.8437 to align # Constraint # added constraint: constraint((T0345)A28.CB, (T0345)L59.CB) [> 2.7067 = 4.5111 < 5.8645] w=0.8408 to align # Constraint # added constraint: constraint((T0345)A28.CB, (T0345)V60.CB) [> 4.2827 = 7.1378 < 9.2792] w=0.8331 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)P65.CB) [> 3.8941 = 6.4902 < 8.4373] w=0.8303 to align # Constraint # added constraint: constraint((T0345)A28.CB, (T0345)I157.CB) [> 4.0923 = 6.8206 < 8.8667] w=0.8208 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)I157.CB) [> 4.4217 = 7.3695 < 9.5804] w=0.8056 to align # Constraint # added constraint: constraint((T0345)A28.CB, (T0345)G158.CA) [> 3.1269 = 5.2116 < 6.7750] w=0.8029 to align # Constraint # added constraint: constraint((T0345)R27.CB, (T0345)V60.CB) [> 3.2099 = 5.3498 < 6.9547] w=0.7999 to align # Constraint # added constraint: constraint((T0345)R27.CB, (T0345)L59.CB) [> 3.9357 = 6.5595 < 8.5273] w=0.7869 to align # Constraint # added constraint: constraint((T0345)V29.CB, (T0345)L156.CB) [> 4.3822 = 7.3036 < 9.4947] w=0.7797 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)I180.CB) [> 4.1740 = 6.9567 < 9.0437] w=0.7735 to align # Constraint # added constraint: constraint((T0345)R27.CB, (T0345)R58.CB) [> 3.6899 = 6.1498 < 7.9947] w=0.7684 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)K154.CB) [> 3.2334 = 5.3890 < 7.0058] w=0.7311 to align # Constraint # added constraint: constraint((T0345)F24.CB, (T0345)V60.CB) [> 3.5036 = 5.8393 < 7.5911] w=0.7168 to align # Constraint # added constraint: constraint((T0345)I31.CB, (T0345)K154.CB) [> 4.2511 = 7.0851 < 9.2106] w=0.7117 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)K154.CB) [> 3.7753 = 6.2922 < 8.1798] w=0.7117 to align # Constraint # added constraint: constraint((T0345)L51.CB, (T0345)V61.CB) [> 3.6825 = 6.1376 < 7.9788] w=0.6998 to align # Constraint # added constraint: constraint((T0345)A28.CB, (T0345)L156.CB) [> 4.0808 = 6.8013 < 8.8417] w=0.6959 to align # Constraint # added constraint: constraint((T0345)R165.CB, (T0345)D179.CB) [> 3.5461 = 5.9102 < 7.6833] w=0.6883 to align # Constraint # added constraint: constraint((T0345)K154.CB, (T0345)R166.CB) [> 4.1856 = 6.9761 < 9.0689] w=0.6793 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)E153.CB) [> 2.8993 = 4.8321 < 6.2818] w=0.6718 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)C66.CB) [> 3.4156 = 5.6926 < 7.4004] w=0.6661 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)K154.CB) [> 4.2649 = 7.1081 < 9.2406] w=0.6487 to align # Constraint # added constraint: constraint((T0345)A28.CB, (T0345)P159.CB) [> 3.4632 = 5.7720 < 7.5036] w=0.6432 to align # Constraint # added constraint: constraint((T0345)L48.CB, (T0345)V61.CB) [> 3.7967 = 6.3279 < 8.2262] w=0.6371 to align # Constraint # added constraint: constraint((T0345)S36.CB, (T0345)P65.CB) [> 4.1997 = 6.9995 < 9.0993] w=0.6333 to align # Constraint # added constraint: constraint((T0345)K154.CB, (T0345)Y167.CB) [> 2.9879 = 4.9798 < 6.4737] w=0.6327 to align # Constraint # added constraint: constraint((T0345)L59.CB, (T0345)I180.CB) [> 3.6697 = 6.1161 < 7.9509] w=0.6305 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)L48.CB) [> 3.7608 = 6.2680 < 8.1483] w=0.6202 to align # Constraint # added constraint: constraint((T0345)Q47.CB, (T0345)T173.CB) [> 3.4227 = 5.7045 < 7.4159] w=0.6182 to align # Constraint # added constraint: constraint((T0345)G26.CA, (T0345)E160.CB) [> 4.2010 = 7.0016 < 9.1021] w=0.5989 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)E153.CB) [> 4.5237 = 7.5395 < 9.8013] w=0.5980 to align # Constraint # added constraint: constraint((T0345)Q52.CB, (T0345)V61.CB) [> 2.9482 = 4.9136 < 6.3877] w=0.5929 to align # Constraint # added constraint: constraint((T0345)E153.CB, (T0345)R166.CB) [> 3.9655 = 6.6092 < 8.5919] w=0.5926 to align # Constraint # added constraint: constraint((T0345)F164.CB, (T0345)L183.CB) [> 3.6055 = 6.0092 < 7.8119] w=0.5848 to align # Constraint # added constraint: constraint((T0345)P65.CB, (T0345)I80.CB) [> 3.6279 = 6.0466 < 7.8605] w=0.5713 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)F152.CB) [> 3.8187 = 6.3646 < 8.2740] w=0.5694 to align # Constraint # added constraint: constraint((T0345)E153.CB, (T0345)Y167.CB) [> 4.0484 = 6.7473 < 8.7715] w=0.5450 to align # Constraint # added constraint: constraint((T0345)I31.CB, (T0345)V61.CB) [> 4.6695 = 7.7824 < 10.1172] w=0.5447 to align # Constraint # added constraint: constraint((T0345)I31.CB, (T0345)L156.CB) [> 4.2865 = 7.1442 < 9.2875] w=0.5441 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)F155.CB) [> 4.4333 = 7.3889 < 9.6055] w=0.5422 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)C66.CB) [> 3.3863 = 5.6439 < 7.3371] w=0.5379 to align # Constraint # added constraint: constraint((T0345)L156.CB, (T0345)I180.CB) [> 3.9839 = 6.6398 < 8.6317] w=0.5255 to align # Constraint # added constraint: constraint((T0345)V34.CB, (T0345)F45.CB) [> 4.2438 = 7.0730 < 9.1949] w=0.5253 to align # Constraint # added constraint: constraint((T0345)D8.CB, (T0345)F21.CB) [> 3.6165 = 6.0274 < 7.8357] w=0.5233 to align # Constraint # added constraint: constraint((T0345)Y167.CB, (T0345)D179.CB) [> 4.0524 = 6.7540 < 8.7802] w=0.5224 to align # Constraint # added constraint: constraint((T0345)V34.CB, (T0345)D44.CB) [> 4.1321 = 6.8869 < 8.9530] w=0.5156 to align # Constraint # added constraint: constraint((T0345)G63.CA, (T0345)V100.CB) [> 3.6825 = 6.1375 < 7.9788] w=0.5144 to align # Constraint # added constraint: constraint((T0345)L84.CB, (T0345)Y93.CB) [> 3.3331 = 5.5552 < 7.2217] w=0.5135 to align # Constraint # added constraint: constraint((T0345)V34.CB, (T0345)C66.CB) [> 4.0542 = 6.7571 < 8.7842] w=0.5105 to align # Constraint # added constraint: constraint((T0345)L62.CB, (T0345)V100.CB) [> 3.7555 = 6.2591 < 8.1369] w=0.5067 to align # Constraint # added constraint: constraint((T0345)L51.CB, (T0345)E177.CB) [> 3.9945 = 6.6575 < 8.6547] w=0.5022 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)N151.CB) [> 3.5526 = 5.9210 < 7.6973] w=0.5007 to align # Constraint # added constraint: constraint((T0345)L9.CB, (T0345)D20.CB) [> 4.3191 = 7.1985 < 9.3580] w=0.4935 to align # Constraint # added constraint: constraint((T0345)V34.CB, (T0345)F152.CB) [> 3.4635 = 5.7725 < 7.5043] w=0.4928 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)P65.CB) [> 4.4843 = 7.4739 < 9.7160] w=0.4877 to align # Constraint # added constraint: constraint((T0345)A28.CB, (T0345)I180.CB) [> 3.9471 = 6.5784 < 8.5520] w=0.4873 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)F152.CB) [> 3.6215 = 6.0359 < 7.8467] w=0.4869 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)Y123.CB) [> 3.1577 = 5.2628 < 6.8417] w=0.4864 to align # Constraint # added constraint: constraint((T0345)G63.CA, (T0345)F97.CB) [> 3.6691 = 6.1151 < 7.9496] w=0.4857 to align # Constraint # added constraint: constraint((T0345)A28.CB, (T0345)L183.CB) [> 3.4982 = 5.8303 < 7.5794] w=0.4796 to align # Constraint # added constraint: constraint((T0345)E153.CB, (T0345)S168.CB) [> 3.1482 = 5.2470 < 6.8211] w=0.4790 to align # Constraint # added constraint: constraint((T0345)L156.CB, (T0345)L183.CB) [> 3.8208 = 6.3679 < 8.2783] w=0.4774 to align # Constraint # added constraint: constraint((T0345)L84.CB, (T0345)P95.CB) [> 3.4121 = 5.6869 < 7.3929] w=0.4759 to align # Constraint # added constraint: constraint((T0345)R27.CB, (T0345)G158.CA) [> 4.5132 = 7.5221 < 9.7787] w=0.4723 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)I176.CB) [> 4.2170 = 7.0283 < 9.1369] w=0.4658 to align # Constraint # added constraint: constraint((T0345)F155.CB, (T0345)Y167.CB) [> 4.2363 = 7.0605 < 9.1787] w=0.4648 to align # Constraint # added constraint: constraint((T0345)L62.CB, (T0345)F97.CB) [> 3.9706 = 6.6176 < 8.6029] w=0.4626 to align # Constraint # added constraint: constraint((T0345)S10.CB, (T0345)F21.CB) [> 4.3924 = 7.3207 < 9.5169] w=0.4530 to align # Constraint # added constraint: constraint((T0345)S36.CB, (T0345)S83.CB) [> 2.6337 = 4.3895 < 5.7063] w=0.4527 to align # Constraint # added constraint: constraint((T0345)L51.CB, (T0345)I176.CB) [> 3.9845 = 6.6409 < 8.6331] w=0.4435 to align # Constraint # added constraint: constraint((T0345)K154.CB, (T0345)F171.CB) [> 3.7636 = 6.2727 < 8.1545] w=0.4419 to align # Constraint # added constraint: constraint((T0345)L156.CB, (T0345)D179.CB) [> 3.5696 = 5.9493 < 7.7340] w=0.4363 to align # Constraint # added constraint: constraint((T0345)P65.CB, (T0345)C75.CB) [> 2.9524 = 4.9206 < 6.3968] w=0.4344 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)F155.CB) [> 4.1753 = 6.9588 < 9.0464] w=0.4331 to align # Constraint # added constraint: constraint((T0345)L62.CB, (T0345)T98.CB) [> 3.2814 = 5.4690 < 7.1097] w=0.4330 to align # Constraint # added constraint: constraint((T0345)F6.CB, (T0345)P163.CB) [> 3.3778 = 5.6296 < 7.3185] w=0.4321 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)F114.CB) [> 4.0587 = 6.7645 < 8.7939] w=0.4248 to align # Constraint # added constraint: constraint((T0345)L14.CB, (T0345)L81.CB) [> 3.3580 = 5.5967 < 7.2757] w=0.4247 to align # Constraint # added constraint: constraint((T0345)K154.CB, (T0345)I176.CB) [> 4.0039 = 6.6731 < 8.6751] w=0.4246 to align # Constraint # added constraint: constraint((T0345)D8.CB, (T0345)N22.CB) [> 3.6108 = 6.0180 < 7.8233] w=0.4244 to align # Constraint # added constraint: constraint((T0345)R25.CB, (T0345)P159.CB) [> 4.1089 = 6.8482 < 8.9026] w=0.4226 to align # Constraint # added constraint: constraint((T0345)G63.CA, (T0345)T98.CB) [> 3.9608 = 6.6013 < 8.5817] w=0.4176 to align # Constraint # added constraint: constraint((T0345)F64.CB, (T0345)F114.CB) [> 3.9069 = 6.5114 < 8.4649] w=0.4172 to align # Constraint # added constraint: constraint((T0345)S36.CB, (T0345)C75.CB) [> 3.3412 = 5.5687 < 7.2393] w=0.4145 to align # Constraint # added constraint: constraint((T0345)P65.CB, (T0345)V100.CB) [> 4.2180 = 7.0300 < 9.1390] w=0.4102 to align # Constraint # added constraint: constraint((T0345)L9.CB, (T0345)V113.CB) [> 3.1963 = 5.3272 < 6.9254] w=0.4083 to align # Constraint # added constraint: constraint((T0345)C66.CB, (T0345)C75.CB) [> 3.7582 = 6.2637 < 8.1427] w=0.4030 to align # Constraint # added constraint: constraint((T0345)F6.CB, (T0345)I157.CB) [> 3.1694 = 5.2823 < 6.8670] w=0.4015 to align # Constraint # added constraint: constraint((T0345)A11.CB, (T0345)V100.CB) [> 2.7543 = 4.5904 < 5.9675] w=0.4004 to align # Constraint # added constraint: constraint((T0345)C38.CB, (T0345)F152.CB) [> 3.9600 = 6.6000 < 8.5800] w=0.3980 to align # Constraint # added constraint: constraint((T0345)L51.CB, (T0345)T173.CB) [> 3.9239 = 6.5398 < 8.5018] w=0.3963 to align # Constraint # added constraint: constraint((T0345)F64.CB, (T0345)V100.CB) [> 2.9364 = 4.8939 < 6.3621] w=0.3948 to align # Constraint # added constraint: constraint((T0345)F6.CB, (T0345)E162.CB) [> 4.2222 = 7.0370 < 9.1480] w=0.3937 to align # Constraint # added constraint: constraint((T0345)I80.CB, (T0345)L99.CB) [> 3.3075 = 5.5125 < 7.1663] w=0.3926 to align # Constraint # added constraint: constraint((T0345)C66.CB, (T0345)F114.CB) [> 3.8627 = 6.4378 < 8.3692] w=0.3863 to align # Constraint # added constraint: constraint((T0345)S36.CB, (T0345)E79.CB) [> 2.9830 = 4.9717 < 6.4632] w=0.3858 to align # Constraint # added constraint: constraint((T0345)F55.CB, (T0345)I180.CB) [> 3.9282 = 6.5470 < 8.5111] w=0.3856 to align # Constraint # added constraint: constraint((T0345)V19.CB, (T0345)T98.CB) [> 3.9322 = 6.5536 < 8.5197] w=0.3848 to align # Constraint # added constraint: constraint((T0345)V61.CB, (T0345)F97.CB) [> 2.6937 = 4.4894 < 5.8363] w=0.3842 to align # Constraint # added constraint: constraint((T0345)Q47.CB, (T0345)I176.CB) [> 4.0195 = 6.6992 < 8.7090] w=0.3839 to align # Constraint # added constraint: constraint((T0345)F45.CB, (T0345)Y93.CB) [> 3.6852 = 6.1420 < 7.9846] w=0.3835 to align # Constraint # added constraint: constraint((T0345)R54.CB, (T0345)E177.CB) [> 4.2080 = 7.0133 < 9.1173] w=0.3803 to align # Constraint # added constraint: constraint((T0345)T40.CB, (T0345)F152.CB) [> 3.5866 = 5.9777 < 7.7709] w=0.3749 to align # Constraint # added constraint: constraint((T0345)T41.CB, (T0345)F152.CB) [> 2.8140 = 4.6900 < 6.0970] w=0.3749 to align # Constraint # added constraint: constraint((T0345)I31.CB, (T0345)L117.CB) [> 4.2835 = 7.1392 < 9.2809] w=0.3747 to align # Constraint # added constraint: constraint((T0345)F64.CB, (T0345)V113.CB) [> 3.9538 = 6.5897 < 8.5666] w=0.3747 to align # Constraint # added constraint: constraint((T0345)K4.CB, (T0345)P163.CB) [> 3.1268 = 5.2113 < 6.7746] w=0.3707 to align # Constraint # added constraint: constraint((T0345)A28.CB, (T0345)L184.CB) [> 3.8907 = 6.4844 < 8.4298] w=0.3678 to align # Constraint # added constraint: constraint((T0345)Y167.CB, (T0345)I176.CB) [> 3.9757 = 6.6262 < 8.6140] w=0.3645 to align # Constraint # added constraint: constraint((T0345)L59.CB, (T0345)L184.CB) [> 3.7283 = 6.2138 < 8.0779] w=0.3598 to align # Constraint # added constraint: constraint((T0345)I31.CB, (T0345)L121.CB) [> 4.4391 = 7.3985 < 9.6181] w=0.3590 to align # Constraint # added constraint: constraint((T0345)A11.CB, (T0345)V113.CB) [> 3.8222 = 6.3703 < 8.2814] w=0.3554 to align # Constraint # added constraint: constraint((T0345)S5.CB, (T0345)P163.CB) [> 4.4432 = 7.4054 < 9.6270] w=0.3553 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)N67.CB) [> 3.3883 = 5.6472 < 7.3414] w=0.3545 to align # Constraint # added constraint: constraint((T0345)Q52.CB, (T0345)T96.CB) [> 3.5908 = 5.9847 < 7.7801] w=0.3544 to align # Constraint # added constraint: constraint((T0345)F24.CB, (T0345)I157.CB) [> 4.1365 = 6.8942 < 8.9624] w=0.3487 to align # Constraint # added constraint: constraint((T0345)F64.CB, (T0345)L99.CB) [> 4.4932 = 7.4887 < 9.7353] w=0.3481 to align # Constraint # added constraint: constraint((T0345)L14.CB, (T0345)L99.CB) [> 3.1383 = 5.2304 < 6.7995] w=0.3476 to align # Constraint # added constraint: constraint((T0345)I12.CB, (T0345)V100.CB) [> 4.0223 = 6.7038 < 8.7150] w=0.3476 to align # Constraint # added constraint: constraint((T0345)Y123.CB, (T0345)E153.CB) [> 3.1546 = 5.2576 < 6.8349] w=0.3473 to align # Constraint # added constraint: constraint((T0345)L84.CB, (T0345)L99.CB) [> 3.7407 = 6.2345 < 8.1049] w=0.3464 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)L121.CB) [> 4.2595 = 7.0991 < 9.2289] w=0.3407 to align # Constraint # added constraint: constraint((T0345)C66.CB, (T0345)V148.CB) [> 3.8758 = 6.4597 < 8.3975] w=0.3391 to align # Constraint # added constraint: constraint((T0345)A11.CB, (T0345)F64.CB) [> 4.1236 = 6.8726 < 8.9344] w=0.3390 to align # Constraint # added constraint: constraint((T0345)F152.CB, (T0345)T170.CB) [> 3.7171 = 6.1951 < 8.0536] w=0.3339 to align # Constraint # added constraint: constraint((T0345)N49.CB, (T0345)Y93.CB) [> 3.7346 = 6.2243 < 8.0917] w=0.3292 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)W150.CB) [> 3.7490 = 6.2483 < 8.1228] w=0.3277 to align # Constraint # added constraint: constraint((T0345)Q47.CB, (T0345)F171.CB) [> 3.9604 = 6.6007 < 8.5809] w=0.3256 to align # Constraint # added constraint: constraint((T0345)L9.CB, (T0345)Y116.CB) [> 3.9277 = 6.5462 < 8.5100] w=0.3249 to align # Constraint # added constraint: constraint((T0345)F64.CB, (T0345)L117.CB) [> 3.6460 = 6.0766 < 7.8996] w=0.3229 to align # Constraint # added constraint: constraint((T0345)F6.CB, (T0345)F155.CB) [> 4.1037 = 6.8396 < 8.8914] w=0.3170 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)K118.CB) [> 3.8275 = 6.3792 < 8.2930] w=0.3152 to align # Constraint # added constraint: constraint((T0345)L48.CB, (T0345)P95.CB) [> 4.0291 = 6.7152 < 8.7298] w=0.3123 to align # Constraint # added constraint: constraint((T0345)F64.CB, (T0345)K118.CB) [> 4.3224 = 7.2040 < 9.3652] w=0.3078 to align # Constraint # added constraint: constraint((T0345)C66.CB, (T0345)D147.CB) [> 3.5645 = 5.9408 < 7.7230] w=0.3072 to align # Constraint # added constraint: constraint((T0345)L117.CB, (T0345)F155.CB) [> 3.8943 = 6.4905 < 8.4377] w=0.3061 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)L117.CB) [> 4.3253 = 7.2087 < 9.3714] w=0.3014 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)L48.CB) [> 4.3867 = 7.3111 < 9.5044] w=0.3010 to align # Constraint # added constraint: constraint((T0345)V60.CB, (T0345)F97.CB) [> 4.3799 = 7.2998 < 9.4897] w=0.2996 to align # Constraint # added constraint: constraint((T0345)V29.CB, (T0345)F155.CB) [> 4.5260 = 7.5433 < 9.8063] w=0.2994 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)D147.CB) [> 3.1430 = 5.2382 < 6.8097] w=0.2977 to align # Constraint # added constraint: constraint((T0345)A3.CB, (T0345)P163.CB) [> 3.9693 = 6.6155 < 8.6001] w=0.2938 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)Q47.CB) [> 4.1028 = 6.8380 < 8.8894] w=0.2933 to align # Constraint # added constraint: constraint((T0345)I12.CB, (T0345)N77.CB) [> 3.2905 = 5.4842 < 7.1295] w=0.2929 to align # Constraint # added constraint: constraint((T0345)V34.CB, (T0345)V148.CB) [> 3.6942 = 6.1571 < 8.0042] w=0.2909 to align # Constraint # added constraint: constraint((T0345)V61.CB, (T0345)T98.CB) [> 4.1072 = 6.8453 < 8.8989] w=0.2906 to align # Constraint # added constraint: constraint((T0345)K154.CB, (T0345)S168.CB) [> 4.2773 = 7.1288 < 9.2674] w=0.2891 to align # Constraint # added constraint: constraint((T0345)Y7.CB, (T0345)Y116.CB) [> 3.3039 = 5.5065 < 7.1585] w=0.2857 to align # Constraint # added constraint: constraint((T0345)S36.CB, (T0345)N67.CB) [> 4.2412 = 7.0687 < 9.1893] w=0.2853 to align # Constraint # added constraint: constraint((T0345)A28.CB, (T0345)R57.CB) [> 4.1182 = 6.8636 < 8.9227] w=0.2839 to align # Constraint # added constraint: constraint((T0345)L156.CB, (T0345)Y167.CB) [> 4.5177 = 7.5295 < 9.7883] w=0.2838 to align # Constraint # added constraint: constraint((T0345)A28.CB, (T0345)F164.CB) [> 4.4746 = 7.4576 < 9.6949] w=0.2792 to align # Constraint # added constraint: constraint((T0345)F55.CB, (T0345)L184.CB) [> 3.7911 = 6.3185 < 8.2141] w=0.2748 to align # Constraint # added constraint: constraint((T0345)F114.CB, (T0345)V148.CB) [> 3.2781 = 5.4636 < 7.1026] w=0.2715 to align # Constraint # added constraint: constraint((T0345)A11.CB, (T0345)F21.CB) [> 4.0626 = 6.7709 < 8.8022] w=0.2697 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)N151.CB) [> 3.2658 = 5.4430 < 7.0760] w=0.2695 to align # Constraint # added constraint: constraint((T0345)Q52.CB, (T0345)Q94.CB) [> 3.7114 = 6.1857 < 8.0414] w=0.2685 to align # Constraint # added constraint: constraint((T0345)Q47.CB, (T0345)P172.CB) [> 4.1997 = 6.9994 < 9.0993] w=0.2658 to align # Constraint # added constraint: constraint((T0345)R58.CB, (T0345)L184.CB) [> 3.3817 = 5.6361 < 7.3270] w=0.2637 to align # Constraint # added constraint: constraint((T0345)V100.CB, (T0345)V113.CB) [> 3.9117 = 6.5195 < 8.4754] w=0.2619 to align # Constraint # added constraint: constraint((T0345)Y125.CB, (T0345)E153.CB) [> 3.9997 = 6.6662 < 8.6661] w=0.2602 to align # Constraint # added constraint: constraint((T0345)F24.CB, (T0345)L62.CB) [> 4.2779 = 7.1299 < 9.2689] w=0.2526 to align # Constraint # added constraint: constraint((T0345)V60.CB, (T0345)T98.CB) [> 4.0607 = 6.7679 < 8.7983] w=0.2521 to align # Constraint # added constraint: constraint((T0345)Q52.CB, (T0345)P95.CB) [> 3.7488 = 6.2481 < 8.1225] w=0.2489 to align # Constraint # added constraint: constraint((T0345)F6.CB, (T0345)V29.CB) [> 4.4951 = 7.4918 < 9.7393] w=0.2481 to align # Constraint # added constraint: constraint((T0345)G63.CA, (T0345)P95.CB) [> 3.9465 = 6.5775 < 8.5508] w=0.2447 to align # Constraint # added constraint: constraint((T0345)V34.CB, (T0345)N151.CB) [> 3.8112 = 6.3521 < 8.2577] w=0.2406 to align # Constraint # added constraint: constraint((T0345)L48.CB, (T0345)Y93.CB) [> 3.8066 = 6.3443 < 8.2476] w=0.2394 to align # Constraint # added constraint: constraint((T0345)R57.CB, (T0345)I180.CB) [> 3.7059 = 6.1765 < 8.0294] w=0.2390 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)F171.CB) [> 4.4442 = 7.4070 < 9.6292] w=0.2243 to align # Constraint # added constraint: constraint((T0345)T40.CB, (T0345)N151.CB) [> 4.2664 = 7.1106 < 9.2438] w=0.2240 to align # Constraint # added constraint: constraint((T0345)V34.CB, (T0345)W150.CB) [> 3.7322 = 6.2203 < 8.0864] w=0.2212 to align # Constraint # added constraint: constraint((T0345)E153.CB, (T0345)R169.CB) [> 4.4052 = 7.3420 < 9.5446] w=0.2210 to align # Constraint # added constraint: constraint((T0345)W150.CB, (T0345)R169.CB) [> 3.8541 = 6.4235 < 8.3506] w=0.2206 to align # Constraint # added constraint: constraint((T0345)N13.CB, (T0345)N77.CB) [> 4.1224 = 6.8707 < 8.9319] w=0.2171 to align # Constraint # added constraint: constraint((T0345)F6.CB, (T0345)I31.CB) [> 4.6435 = 7.7392 < 10.0610] w=0.2158 to align # Constraint # added constraint: constraint((T0345)L84.CB, (T0345)F97.CB) [> 3.6779 = 6.1298 < 7.9688] w=0.2065 to align # Constraint # added constraint: constraint((T0345)C38.CB, (T0345)N151.CB) [> 2.6885 = 4.4809 < 5.8251] w=0.2009 to align # Constraint # added constraint: constraint((T0345)V61.CB, (T0345)P95.CB) [> 3.0469 = 5.0782 < 6.6017] w=0.1992 to align # Constraint # added constraint: constraint((T0345)Y123.CB, (T0345)N151.CB) [> 3.4989 = 5.8316 < 7.5810] w=0.1978 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)F45.CB) [> 4.3749 = 7.2916 < 9.4791] w=0.1922 to align # Constraint # added constraint: constraint((T0345)W150.CB, (T0345)S168.CB) [> 3.7352 = 6.2254 < 8.0930] w=0.1910 to align # Constraint # added constraint: constraint((T0345)F21.CB, (T0345)L62.CB) [> 4.4064 = 7.3440 < 9.5472] w=0.1907 to align # Constraint # added constraint: constraint((T0345)Q47.CB, (T0345)V61.CB) [> 3.7833 = 6.3055 < 8.1971] w=0.1901 to align # Constraint # added constraint: constraint((T0345)Y7.CB, (T0345)L117.CB) [> 4.0780 = 6.7967 < 8.8357] w=0.1867 to align # Constraint # added constraint: constraint((T0345)L9.CB, (T0345)P112.CB) [> 4.1010 = 6.8350 < 8.8855] w=0.1866 to align # Constraint # added constraint: constraint((T0345)C38.CB, (T0345)C66.CB) [> 4.3094 = 7.1824 < 9.3371] w=0.1856 to align # Constraint # added constraint: constraint((T0345)V34.CB, (T0345)S83.CB) [> 4.5059 = 7.5099 < 9.7629] w=0.1839 to align # Constraint # added constraint: constraint((T0345)F21.CB, (T0345)I157.CB) [> 4.5563 = 7.5938 < 9.8719] w=0.1834 to align # Constraint # added constraint: constraint((T0345)F64.CB, (T0345)K102.CB) [> 3.5640 = 5.9401 < 7.7221] w=0.1810 to align # Constraint # added constraint: constraint((T0345)L14.CB, (T0345)V100.CB) [> 3.8891 = 6.4818 < 8.4263] w=0.1767 to align # Constraint # added constraint: constraint((T0345)A3.CB, (T0345)F164.CB) [> 4.2634 = 7.1057 < 9.2374] w=0.1763 to align # Constraint # added constraint: constraint((T0345)S83.CB, (T0345)P95.CB) [> 4.3966 = 7.3277 < 9.5260] w=0.1761 to align # Constraint # added constraint: constraint((T0345)C38.CB, (T0345)D147.CB) [> 3.1115 = 5.1858 < 6.7416] w=0.1743 to align # Constraint # added constraint: constraint((T0345)K102.CB, (T0345)H111.CB) [> 3.6343 = 6.0572 < 7.8744] w=0.1741 to align # Constraint # added constraint: constraint((T0345)L59.CB, (T0345)L156.CB) [> 4.4601 = 7.4335 < 9.6636] w=0.1732 to align # Constraint # added constraint: constraint((T0345)R57.CB, (T0345)K181.CB) [> 3.9799 = 6.6331 < 8.6231] w=0.1719 to align # Constraint # added constraint: constraint((T0345)L14.CB, (T0345)P95.CB) [> 4.1386 = 6.8977 < 8.9670] w=0.1687 to align # Constraint # added constraint: constraint((T0345)A11.CB, (T0345)K102.CB) [> 3.3977 = 5.6629 < 7.3617] w=0.1668 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)W150.CB) [> 3.9248 = 6.5413 < 8.5037] w=0.1655 to align # Constraint # added constraint: constraint((T0345)V61.CB, (T0345)T96.CB) [> 3.8727 = 6.4545 < 8.3908] w=0.1644 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)E73.CB) [> 2.8916 = 4.8193 < 6.2651] w=0.1611 to align # Constraint # added constraint: constraint((T0345)L9.CB, (T0345)L117.CB) [> 3.5501 = 5.9169 < 7.6919] w=0.1597 to align # Constraint # added constraint: constraint((T0345)F152.CB, (T0345)Y167.CB) [> 3.7271 = 6.2119 < 8.0755] w=0.1582 to align # Constraint # added constraint: constraint((T0345)P65.CB, (T0345)S83.CB) [> 4.4923 = 7.4872 < 9.7334] w=0.1565 to align # Constraint # added constraint: constraint((T0345)I157.CB, (T0345)L183.CB) [> 3.8271 = 6.3785 < 8.2921] w=0.1551 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)L84.CB) [> 4.1763 = 6.9605 < 9.0487] w=0.1546 to align # Constraint # added constraint: constraint((T0345)C66.CB, (T0345)N151.CB) [> 3.9605 = 6.6008 < 8.5811] w=0.1529 to align # Constraint # added constraint: constraint((T0345)Y7.CB, (T0345)K120.CB) [> 2.9002 = 4.8336 < 6.2836] w=0.1528 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)W150.CB) [> 3.8516 = 6.4193 < 8.3450] w=0.1518 to align # Constraint # added constraint: constraint((T0345)Q47.CB, (T0345)E177.CB) [> 3.3173 = 5.5288 < 7.1875] w=0.1497 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)L184.CB) [> 4.0995 = 6.8325 < 8.8822] w=0.1493 to align # Constraint # added constraint: constraint((T0345)Y7.CB, (T0345)V113.CB) [> 3.8131 = 6.3552 < 8.2617] w=0.1476 to align # Constraint # added constraint: constraint((T0345)K85.CB, (T0345)P95.CB) [> 4.5306 = 7.5510 < 9.8163] w=0.1455 to align # Constraint # added constraint: constraint((T0345)F64.CB, (T0345)I80.CB) [> 3.6092 = 6.0153 < 7.8199] w=0.1453 to align # Constraint # added constraint: constraint((T0345)I2.CB, (T0345)F164.CB) [> 3.7273 = 6.2122 < 8.0758] w=0.1430 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)D147.CB) [> 3.5106 = 5.8509 < 7.6062] w=0.1404 to align # Constraint # added constraint: constraint((T0345)L62.CB, (T0345)T96.CB) [> 3.0329 = 5.0549 < 6.5713] w=0.1378 to align # Constraint # added constraint: constraint((T0345)G63.CA, (T0345)L84.CB) [> 4.3960 = 7.3267 < 9.5247] w=0.1377 to align # Constraint # added constraint: constraint((T0345)K102.CB, (T0345)P112.CB) [> 3.7017 = 6.1695 < 8.0203] w=0.1360 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)Q72.CB) [> 3.0195 = 5.0325 < 6.5422] w=0.1307 to align # Constraint # added constraint: constraint((T0345)V60.CB, (T0345)P95.CB) [> 4.4609 = 7.4348 < 9.6653] w=0.1302 to align # Constraint # added constraint: constraint((T0345)P65.CB, (T0345)L84.CB) [> 4.3048 = 7.1746 < 9.3270] w=0.1301 to align # Constraint # added constraint: constraint((T0345)C66.CB, (T0345)L81.CB) [> 2.9964 = 4.9941 < 6.4923] w=0.1286 to align # Constraint # added constraint: constraint((T0345)A11.CB, (T0345)L62.CB) [> 4.5185 = 7.5309 < 9.7902] w=0.1281 to align # Constraint # added constraint: constraint((T0345)C38.CB, (T0345)V148.CB) [> 4.1223 = 6.8704 < 8.9316] w=0.1269 to align # Constraint # added constraint: constraint((T0345)G39.CA, (T0345)I80.CB) [> 4.5158 = 7.5264 < 9.7843] w=0.1238 to align # Constraint # added constraint: constraint((T0345)L9.CB, (T0345)K102.CB) [> 4.4420 = 7.4033 < 9.6243] w=0.1227 to align # Constraint # added constraint: constraint((T0345)V60.CB, (T0345)T96.CB) [> 3.7208 = 6.2014 < 8.0618] w=0.1226 to align # Constraint # added constraint: constraint((T0345)A11.CB, (T0345)C103.CB) [> 3.3858 = 5.6430 < 7.3359] w=0.1225 to align # Constraint # added constraint: constraint((T0345)A11.CB, (T0345)L99.CB) [> 3.6778 = 6.1297 < 7.9686] w=0.1218 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)N151.CB) [> 4.2443 = 7.0738 < 9.1960] w=0.1218 to align # Constraint # added constraint: constraint((T0345)Y125.CB, (T0345)V148.CB) [> 4.3131 = 7.1884 < 9.3450] w=0.1202 to align # Constraint # added constraint: constraint((T0345)V60.CB, (T0345)V100.CB) [> 4.2763 = 7.1272 < 9.2653] w=0.1194 to align # Constraint # added constraint: constraint((T0345)L37.CB, (T0345)N67.CB) [> 4.4725 = 7.4542 < 9.6904] w=0.1192 to align # Constraint # added constraint: constraint((T0345)F24.CB, (T0345)G158.CA) [> 3.9943 = 6.6571 < 8.6543] w=0.1189 to align # Constraint # added constraint: constraint((T0345)L9.CB, (T0345)V100.CB) [> 4.0236 = 6.7059 < 8.7177] w=0.1150 to align # Constraint # added constraint: constraint((T0345)V100.CB, (T0345)E110.CB) [> 3.6412 = 6.0686 < 7.8892] w=0.1147 to align # Constraint # added constraint: constraint((T0345)V34.CB, (T0345)Q47.CB) [> 4.1631 = 6.9384 < 9.0200] w=0.1131 to align # Constraint # added constraint: constraint((T0345)L156.CB, (T0345)L184.CB) [> 3.9960 = 6.6600 < 8.6580] w=0.1109 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)F97.CB) [> 4.0220 = 6.7034 < 8.7144] w=0.1108 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)V148.CB) [> 4.0294 = 6.7156 < 8.7303] w=0.1105 to align # Constraint # added constraint: constraint((T0345)L37.CB, (T0345)I80.CB) [> 3.7836 = 6.3060 < 8.1979] w=0.1077 to align # Constraint # added constraint: constraint((T0345)P65.CB, (T0345)C103.CB) [> 4.2983 = 7.1638 < 9.3130] w=0.1076 to align # Constraint # added constraint: constraint((T0345)F64.CB, (T0345)C103.CB) [> 3.4643 = 5.7738 < 7.5060] w=0.1072 to align # Constraint # added constraint: constraint((T0345)K154.CB, (T0345)T173.CB) [> 4.2163 = 7.0271 < 9.1353] w=0.1068 to align # Constraint # added constraint: constraint((T0345)G63.CA, (T0345)Y93.CB) [> 4.4194 = 7.3656 < 9.5753] w=0.1018 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)L156.CB) [> 4.4084 = 7.3474 < 9.5516] w=0.1018 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)G158.CA) [> 4.5061 = 7.5102 < 9.7632] w=0.1018 to align # Constraint # added constraint: constraint((T0345)P65.CB, (T0345)F97.CB) [> 4.1540 = 6.9233 < 9.0004] w=0.0995 to align # Constraint # added constraint: constraint((T0345)F64.CB, (T0345)F97.CB) [> 4.5491 = 7.5818 < 9.8564] w=0.0995 to align # Constraint # added constraint: constraint((T0345)Q47.CB, (T0345)F97.CB) [> 3.9077 = 6.5128 < 8.4666] w=0.0974 to align # Constraint # added constraint: constraint((T0345)Y7.CB, (T0345)L121.CB) [> 3.8980 = 6.4967 < 8.4457] w=0.0929 to align # Constraint # added constraint: constraint((T0345)Y7.CB, (T0345)F24.CB) [> 3.9241 = 6.5402 < 8.5022] w=0.0923 to align # Constraint # added constraint: constraint((T0345)I12.CB, (T0345)C103.CB) [> 4.2358 = 7.0597 < 9.1776] w=0.0918 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)Q47.CB) [> 4.4401 = 7.4002 < 9.6203] w=0.0862 to align # Constraint # added constraint: constraint((T0345)V19.CB, (T0345)C103.CB) [> 3.6941 = 6.1568 < 8.0039] w=0.0856 to align # Constraint # added constraint: constraint((T0345)L37.CB, (T0345)E73.CB) [> 4.5582 = 7.5969 < 9.8760] w=0.0844 to align # Constraint # added constraint: constraint((T0345)L9.CB, (T0345)F64.CB) [> 4.6156 = 7.6926 < 10.0004] w=0.0835 to align # Constraint # added constraint: constraint((T0345)V29.CB, (T0345)P159.CB) [> 4.3094 = 7.1823 < 9.3370] w=0.0829 to align # Constraint # added constraint: constraint((T0345)G39.CA, (T0345)P65.CB) [> 3.5894 = 5.9823 < 7.7769] w=0.0801 to align # Constraint # added constraint: constraint((T0345)F45.CB, (T0345)F97.CB) [> 3.7805 = 6.3008 < 8.1911] w=0.0760 to align # Constraint # added constraint: constraint((T0345)L37.CB, (T0345)C66.CB) [> 4.5844 = 7.6407 < 9.9329] w=0.0746 to align # Constraint # added constraint: constraint((T0345)N67.CB, (T0345)N77.CB) [> 4.0629 = 6.7716 < 8.8030] w=0.0719 to align # Constraint # added constraint: constraint((T0345)A115.CB, (T0345)P124.CB) [> 3.4599 = 5.7666 < 7.4966] w=0.0708 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)T173.CB) [> 4.6301 = 7.7168 < 10.0318] w=0.0692 to align # Constraint # added constraint: constraint((T0345)L37.CB, (T0345)Q72.CB) [> 3.4945 = 5.8241 < 7.5714] w=0.0692 to align # Constraint # added constraint: constraint((T0345)F6.CB, (T0345)Y116.CB) [> 4.3425 = 7.2375 < 9.4087] w=0.0692 to align # Constraint # added constraint: constraint((T0345)F155.CB, (T0345)F164.CB) [> 3.5874 = 5.9791 < 7.7728] w=0.0688 to align # Constraint # added constraint: constraint((T0345)V105.CB, (T0345)F114.CB) [> 2.8687 = 4.7811 < 6.2155] w=0.0687 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)N151.CB) [> 4.2636 = 7.1061 < 9.2379] w=0.0675 to align # Constraint # added constraint: constraint((T0345)V105.CB, (T0345)V148.CB) [> 3.0739 = 5.1231 < 6.6601] w=0.0615 to align # Constraint # added constraint: constraint((T0345)S10.CB, (T0345)V113.CB) [> 3.9986 = 6.6643 < 8.6636] w=0.0614 to align # Constraint # added constraint: constraint((T0345)T42.CB, (T0345)R88.CB) [> 3.7705 = 6.2841 < 8.1693] w=0.0609 to align # Constraint # added constraint: constraint((T0345)M132.CB, (T0345)W150.CB) [> 4.4866 = 7.4777 < 9.7210] w=0.0594 to align # Constraint # added constraint: constraint((T0345)L131.CB, (T0345)A149.CB) [> 3.2438 = 5.4063 < 7.0282] w=0.0594 to align # Constraint # added constraint: constraint((T0345)Q47.CB, (T0345)G63.CA) [> 4.4466 = 7.4110 < 9.6343] w=0.0584 to align # Constraint # added constraint: constraint((T0345)Y125.CB, (T0345)N151.CB) [> 3.4546 = 5.7576 < 7.4849] w=0.0555 to align # Constraint # added constraint: constraint((T0345)I80.CB, (T0345)E104.CB) [> 3.4123 = 5.6872 < 7.3933] w=0.0553 to align # Constraint # added constraint: constraint((T0345)P65.CB, (T0345)V105.CB) [> 3.9382 = 6.5637 < 8.5328] w=0.0548 to align # Constraint # added constraint: constraint((T0345)P65.CB, (T0345)E104.CB) [> 3.8312 = 6.3853 < 8.3009] w=0.0548 to align # Constraint # added constraint: constraint((T0345)N67.CB, (T0345)K102.CB) [> 3.8942 = 6.4902 < 8.4373] w=0.0538 to align # Constraint # added constraint: constraint((T0345)G63.CA, (T0345)V105.CB) [> 3.6880 = 6.1467 < 7.9907] w=0.0538 to align # Constraint # added constraint: constraint((T0345)F64.CB, (T0345)T98.CB) [> 3.4903 = 5.8172 < 7.5624] w=0.0537 to align # Constraint # added constraint: constraint((T0345)T41.CB, (T0345)R88.CB) [> 3.1375 = 5.2292 < 6.7980] w=0.0534 to align # Constraint # added constraint: constraint((T0345)I139.CB, (T0345)A149.CB) [> 3.7175 = 6.1958 < 8.0546] w=0.0532 to align # Constraint # added constraint: constraint((T0345)L9.CB, (T0345)Q101.CB) [> 3.7566 = 6.2610 < 8.1393] w=0.0528 to align # Constraint # added constraint: constraint((T0345)D8.CB, (T0345)V19.CB) [> 4.4026 = 7.3377 < 9.5390] w=0.0528 to align # Constraint # added constraint: constraint((T0345)I139.CB, (T0345)V148.CB) [> 4.0983 = 6.8304 < 8.8796] w=0.0527 to align # Constraint # added constraint: constraint((T0345)V29.CB, (T0345)R58.CB) [> 2.8026 = 4.6710 < 6.0724] w=0.0517 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)L59.CB) [> 4.1174 = 6.8624 < 8.9211] w=0.0517 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)L62.CB) [> 3.0867 = 5.1445 < 6.6879] w=0.0517 to align # Constraint # added constraint: constraint((T0345)V34.CB, (T0345)L62.CB) [> 4.2762 = 7.1270 < 9.2651] w=0.0517 to align # Constraint # added constraint: constraint((T0345)Q68.CB, (T0345)V105.CB) [> 3.9205 = 6.5342 < 8.4944] w=0.0461 to align # Constraint # added constraint: constraint((T0345)Q68.CB, (T0345)N106.CB) [> 3.4088 = 5.6813 < 7.3857] w=0.0461 to align # Constraint # added constraint: constraint((T0345)Q68.CB, (T0345)I139.CB) [> 3.9722 = 6.6203 < 8.6063] w=0.0461 to align # Constraint # added constraint: constraint((T0345)Q68.CB, (T0345)W140.CB) [> 3.4084 = 5.6807 < 7.3849] w=0.0461 to align # Constraint # added constraint: constraint((T0345)Q68.CB, (T0345)V148.CB) [> 4.6487 = 7.7479 < 10.0722] w=0.0461 to align # Constraint # added constraint: constraint((T0345)F69.CB, (T0345)L137.CB) [> 4.2220 = 7.0367 < 9.1477] w=0.0461 to align # Constraint # added constraint: constraint((T0345)F69.CB, (T0345)V148.CB) [> 4.6776 = 7.7959 < 10.1347] w=0.0461 to align # Constraint # added constraint: constraint((T0345)F69.CB, (T0345)W150.CB) [> 2.9267 = 4.8779 < 6.3412] w=0.0461 to align # Constraint # added constraint: constraint((T0345)F69.CB, (T0345)N151.CB) [> 2.9170 = 4.8618 < 6.3203] w=0.0461 to align # Constraint # added constraint: constraint((T0345)G70.CA, (T0345)L137.CB) [> 3.5188 = 5.8647 < 7.6241] w=0.0461 to align # Constraint # added constraint: constraint((T0345)G70.CA, (T0345)I139.CB) [> 4.6728 = 7.7880 < 10.1245] w=0.0461 to align # Constraint # added constraint: constraint((T0345)S36.CB, (T0345)V87.CB) [> 4.3038 = 7.1731 < 9.3250] w=0.0461 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)F69.CB) [> 3.9633 = 6.6056 < 8.5872] w=0.0461 to align # Constraint # added constraint: constraint((T0345)L131.CB, (T0345)R145.CB) [> 4.6929 = 7.8214 < 10.1679] w=0.0461 to align # Constraint # added constraint: constraint((T0345)N106.CB, (T0345)W140.CB) [> 2.6747 = 4.4578 < 5.7951] w=0.0461 to align # Constraint # added constraint: constraint((T0345)N106.CB, (T0345)V143.CB) [> 4.5681 = 7.6135 < 9.8975] w=0.0461 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)G63.CA) [> 3.7824 = 6.3041 < 8.1953] w=0.0461 to align # Constraint # added constraint: constraint((T0345)I138.CB, (T0345)A149.CB) [> 4.2772 = 7.1286 < 9.2672] w=0.0455 to align # Constraint # added constraint: constraint((T0345)L137.CB, (T0345)V148.CB) [> 2.9248 = 4.8746 < 6.3370] w=0.0451 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)I139.CB) [> 4.4324 = 7.3874 < 9.6036] w=0.0451 to align # Constraint # added constraint: constraint((T0345)F152.CB, (T0345)F164.CB) [> 3.0828 = 5.1379 < 6.6793] w=0.0447 to align # Constraint # added constraint: constraint((T0345)N67.CB, (T0345)E110.CB) [> 3.8100 = 6.3501 < 8.2551] w=0.0442 to align # Constraint # added constraint: constraint((T0345)C66.CB, (T0345)Y86.CB) [> 3.7123 = 6.1872 < 8.0433] w=0.0433 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)Y86.CB) [> 2.8533 = 4.7554 < 6.1821] w=0.0433 to align # Constraint # added constraint: constraint((T0345)V29.CB, (T0345)V100.CB) [> 2.3909 = 3.9848 < 5.1802] w=0.0425 to align # Constraint # added constraint: constraint((T0345)V29.CB, (T0345)L99.CB) [> 4.2057 = 7.0094 < 9.1123] w=0.0425 to align # Constraint # added constraint: constraint((T0345)A28.CB, (T0345)L99.CB) [> 3.8545 = 6.4241 < 8.3513] w=0.0425 to align # Constraint # added constraint: constraint((T0345)L37.CB, (T0345)N151.CB) [> 3.9031 = 6.5051 < 8.4567] w=0.0417 to align # Constraint # added constraint: constraint((T0345)T40.CB, (T0345)Y86.CB) [> 4.2746 = 7.1244 < 9.2617] w=0.0415 to align # Constraint # added constraint: constraint((T0345)R27.CB, (T0345)P56.CB) [> 4.3676 = 7.2793 < 9.4630] w=0.0412 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)F64.CB) [> 3.7081 = 6.1802 < 8.0343] w=0.0385 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)G70.CA) [> 3.7036 = 6.1726 < 8.0244] w=0.0385 to align # Constraint # added constraint: constraint((T0345)T42.CB, (T0345)V87.CB) [> 4.3447 = 7.2412 < 9.4136] w=0.0384 to align # Constraint # added constraint: constraint((T0345)C66.CB, (T0345)L99.CB) [> 4.3500 = 7.2500 < 9.4250] w=0.0383 to align # Constraint # added constraint: constraint((T0345)A28.CB, (T0345)F155.CB) [> 4.0216 = 6.7027 < 8.7135] w=0.0381 to align # Constraint # added constraint: constraint((T0345)H111.CB, (T0345)I138.CB) [> 4.3765 = 7.2942 < 9.4824] w=0.0374 to align # Constraint # added constraint: constraint((T0345)D8.CB, (T0345)K18.CB) [> 3.4822 = 5.8036 < 7.5447] w=0.0306 to align # Constraint # added constraint: constraint((T0345)I138.CB, (T0345)N151.CB) [> 3.3821 = 5.6368 < 7.3278] w=0.0302 to align # Constraint # added constraint: constraint((T0345)F114.CB, (T0345)I139.CB) [> 3.7367 = 6.2278 < 8.0962] w=0.0298 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)P142.CB) [> 3.0049 = 5.0081 < 6.5106] w=0.0231 to align # Constraint # added constraint: constraint((T0345)L30.CB, (T0345)G63.CA) [> 4.6940 = 7.8234 < 10.1704] w=0.0231 to align # Constraint # added constraint: constraint((T0345)P65.CB, (T0345)N151.CB) [> 4.7213 = 7.8687 < 10.2294] w=0.0231 to align # Constraint # added constraint: constraint((T0345)G39.CA, (T0345)N151.CB) [> 4.5448 = 7.5746 < 9.8470] w=0.0231 to align # Constraint # added constraint: constraint((T0345)R27.CB, (T0345)I157.CB) [> 4.6575 = 7.7626 < 10.0914] w=0.0231 to align # Constraint # added constraint: constraint((T0345)G39.CA, (T0345)R145.CB) [> 4.0282 = 6.7137 < 8.7277] w=0.0231 to align # Constraint # added constraint: constraint((T0345)W140.CB, (T0345)W150.CB) [> 3.6798 = 6.1329 < 7.9728] w=0.0230 to align # Constraint # added constraint: constraint((T0345)W140.CB, (T0345)N151.CB) [> 3.0360 = 5.0599 < 6.5779] w=0.0230 to align # Constraint # added constraint: constraint((T0345)M132.CB, (T0345)V148.CB) [> 3.4095 = 5.6824 < 7.3872] w=0.0230 to align # Constraint # added constraint: constraint((T0345)V34.CB, (T0345)T173.CB) [> 4.7318 = 7.8864 < 10.2523] w=0.0230 to align # Constraint # added constraint: constraint((T0345)C38.CB, (T0345)V143.CB) [> 4.0677 = 6.7796 < 8.8135] w=0.0229 to align # Constraint # added constraint: constraint((T0345)I139.CB, (T0345)N151.CB) [> 3.8320 = 6.3866 < 8.3026] w=0.0226 to align # Constraint # added constraint: constraint((T0345)Q47.CB, (T0345)F155.CB) [> 4.1951 = 6.9918 < 9.0894] w=0.0174 to align # Constraint # added constraint: constraint((T0345)F64.CB, (T0345)N151.CB) [> 4.3135 = 7.1892 < 9.3460] w=0.0166 to align # Constraint # added constraint: constraint((T0345)L131.CB, (T0345)N151.CB) [> 2.5959 = 4.3264 < 5.6244] w=0.0162 to align # Constraint # added constraint: constraint((T0345)Q47.CB, (T0345)N175.CB) [> 4.6628 = 7.7713 < 10.1027] w=0.0154 to align # Constraint # added constraint: constraint((T0345)H71.CB, (T0345)P142.CB) [> 3.3921 = 5.6535 < 7.3495] w=0.0154 to align # Constraint # added constraint: constraint((T0345)A3.CB, (T0345)R25.CB) [> 3.2230 = 5.3717 < 6.9832] w=0.0154 to align # Constraint # added constraint: constraint((T0345)A3.CB, (T0345)G161.CA) [> 4.7182 = 7.8637 < 10.2229] w=0.0154 to align # Constraint # added constraint: constraint((T0345)I2.CB, (T0345)L156.CB) [> 4.7791 = 7.9652 < 10.3548] w=0.0154 to align # Constraint # added constraint: constraint((T0345)N33.CB, (T0345)I138.CB) [> 3.1756 = 5.2926 < 6.8804] w=0.0153 to align # Constraint # added constraint: constraint((T0345)S141.CB, (T0345)N151.CB) [> 4.4929 = 7.4881 < 9.7345] w=0.0153 to align # Constraint # added constraint: constraint((T0345)C66.CB, (T0345)V143.CB) [> 4.4877 = 7.4796 < 9.7234] w=0.0153 to align # Constraint # added constraint: constraint((T0345)E32.CB, (T0345)L156.CB) [> 4.7940 = 7.9900 < 10.3870] w=0.0148 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)Q68.CB) [> 4.7645 = 7.9409 < 10.3231] w=0.0148 to align # Constraint # added constraint: constraint((T0345)G39.CA, (T0345)C66.CB) [> 4.7467 = 7.9113 < 10.2846] w=0.0111 to align # Constraint # added constraint: constraint((T0345)C66.CB, (T0345)S141.CB) [> 4.1844 = 6.9741 < 9.0663] w=0.0077 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)W140.CB) [> 4.6060 = 7.6766 < 9.9796] w=0.0077 to align # Constraint # added constraint: constraint((T0345)I2.CB, (T0345)F155.CB) [> 4.6776 = 7.7961 < 10.1349] w=0.0077 to align # Constraint # added constraint: constraint((T0345)S5.CB, (T0345)F155.CB) [> 3.9084 = 6.5141 < 8.4683] w=0.0077 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)K136.CB) [> 4.6961 = 7.8269 < 10.1749] w=0.0077 to align # Constraint # added constraint: constraint((T0345)T41.CB, (T0345)V87.CB) [> 3.8231 = 6.3717 < 8.2833] w=0.0077 to align # Constraint # added constraint: constraint((T0345)P124.CB, (T0345)I138.CB) [> 3.4672 = 5.7786 < 7.5122] w=0.0076 to align # Constraint # added constraint: constraint((T0345)S10.CB, (T0345)L131.CB) [> 4.4214 = 7.3690 < 9.5797] w=0.0076 to align # Constraint # added constraint: constraint((T0345)P124.CB, (T0345)R144.CB) [> 4.2778 = 7.1296 < 9.2685] w=0.0076 to align # Constraint # added constraint: constraint((T0345)L62.CB, (T0345)F155.CB) [> 4.0823 = 6.8038 < 8.8449] w=0.0072 to align # Constraint # added constraint: constraint((T0345)L62.CB, (T0345)L156.CB) [> 2.6732 = 4.4554 < 5.7920] w=0.0072 to align # Constraint # added constraint: constraint((T0345)L62.CB, (T0345)I157.CB) [> 4.6769 = 7.7949 < 10.1334] w=0.0072 to align # Constraint # added constraint: constraint((T0345)G63.CA, (T0345)F155.CB) [> 3.1041 = 5.1735 < 6.7256] w=0.0072 to align # Constraint # added constraint: constraint((T0345)G63.CA, (T0345)L156.CB) [> 4.3057 = 7.1761 < 9.3290] w=0.0072 to align # Constraint # added constraint: constraint((T0345)F64.CB, (T0345)F155.CB) [> 4.4125 = 7.3542 < 9.5605] w=0.0072 to align # Constraint # added constraint: constraint((T0345)F64.CB, (T0345)L156.CB) [> 4.5136 = 7.5226 < 9.7794] w=0.0072 to align # Constraint # added constraint: constraint((T0345)G39.CA, (T0345)G63.CA) [> 3.9365 = 6.5608 < 8.5291] w=0.0055 to align # Constraint # added constraint: constraint((T0345)G39.CA, (T0345)F64.CB) [> 4.6310 = 7.7184 < 10.0339] w=0.0055 to align # Constraint # added constraint: constraint((T0345)L62.CB, (T0345)N151.CB) [> 4.6539 = 7.7565 < 10.0835] w=0.0055 to align # Constraint # added constraint: constraint((T0345)G63.CA, (T0345)N151.CB) [> 4.3673 = 7.2789 < 9.4625] w=0.0055 to align # Constraint # added constraint: constraint((T0345)V87.CB, (T0345)L156.CB) [> 4.3649 = 7.2749 < 9.4573] w=0.0049 to align # Constraint # added constraint: constraint((T0345)Q47.CB, (T0345)P65.CB) [> 4.3411 = 7.2352 < 9.4057] w=0.0008 to align # Constraint # added constraint: constraint((T0345)A35.CB, (T0345)Q47.CB) [> 3.2336 = 5.3894 < 7.0062] w=0.0008 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0345/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0345/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 6 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 17 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 Skipped atom 382, because occupancy 1 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 384, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 386, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 388, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 396, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 398, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 400, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 402, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 404, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 406, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 408, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 410, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz Skipped atom 412, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL2.pdb.gz # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 168 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 Skipped atom 31, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 76, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 137, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 190, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 399, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 508, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 509, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 558, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 675, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz Skipped atom 704, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 Skipped atom 3, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz Skipped atom 580, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 Skipped atom 31, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 76, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 137, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 403, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 513, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 562, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 679, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 708, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL2 # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 Skipped atom 71, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 80, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 89, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 170, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 179, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 300, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 397, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 506, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 555, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 648, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 673, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz Skipped atom 718, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL4.pdb.gz # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 Skipped atom 7, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz Skipped atom 584, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL5.pdb.gz # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 138 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 5 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 Skipped atom 31, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz Skipped atom 76, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz Skipped atom 137, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz Skipped atom 194, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz Skipped atom 403, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz Skipped atom 513, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz Skipped atom 562, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz Skipped atom 679, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz Skipped atom 708, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 Skipped atom 3, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz Skipped atom 584, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL3.pdb.gz # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 Skipped atom 382, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 384, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 386, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 388, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 396, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 398, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 400, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 402, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 404, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 406, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 408, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 410, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 412, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 Skipped atom 158, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL1.pdb.gz Skipped atom 160, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL1.pdb.gz Skipped atom 162, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL1.pdb.gz Skipped atom 164, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL1.pdb.gz Skipped atom 258, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL1.pdb.gz Skipped atom 260, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL1.pdb.gz Skipped atom 262, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL1.pdb.gz Skipped atom 264, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL1.pdb.gz # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 28 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0345 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 251 model score -0.2365 model score -0.2365 model score -0.2365 model score -0.2365 model score -0.2365 model score -0.2365 model score -0.2365 model score -0.3853 model score -0.3856 model score -0.3766 model score -0.2702 model score -0.3832 model score 1.7871 model score 1.3880 model score 1.5066 model score 1.3549 model score 1.4608 model score -0.3892 model score -0.3823 model score -0.3793 model score -0.3744 model score 0.7757 model score 0.9128 model score -0.3474 model score -0.3524 model score -0.3538 model score -0.3686 model score -0.3611 model score -0.3609 model score -0.3691 model score -0.2964 model score -0.1873 model score 0.3966 model score 0.2986 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.3586 model score -0.3383 model score -0.3497 model score -0.3307 model score -0.3579 model score -0.3657 model score -0.3620 model score -0.3611 model score -0.3539 model score -0.3524 model score -0.3853 model score -0.3856 model score -0.3766 model score -0.2695 model score -0.3832 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.4975 model score 2.1310 model score 2.3265 model score 2.1237 model score 2.2105 model score -0.3540 model score 0.6589 model score 0.1560 model score 0.1814 model score 0.8822 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.3623 model score -0.3539 model score -0.3391 model score -0.3620 model score -0.3514 model score -0.3626 model score -0.3668 model score -0.3422 model score -0.3626 model score -0.3797 model score -0.0577 model score -0.0487 model score -0.0439 model score -0.3683 model score -0.3816 model score -0.2698 model score 1.6092 model score 1.4814 model score -0.2998 model score -0.2864 model score -0.2868 model score 0.7625 model score 0.2111 model score -0.3666 model score -0.3726 model score -0.0810 model score -0.0465 model score 0.0809 model score -0.3666 model score -0.3701 model score -0.0465 model score -0.1452 model score 0.2611 model score -0.4441 model score -0.3464 model score -0.3954 model score -0.3796 model score -0.3014 model score -0.3700 model score -0.3345 model score -0.3561 model score -0.3435 model score -0.3498 model score -0.3345 model score -0.3702 model score -0.0671 model score -0.2390 model score -0.2748 model score -0.3686 model score -0.3843 model score -0.3733 model score -0.3796 model score -0.3638 model score -0.3440 model score -0.3690 model score -0.3409 model score -0.3625 model score -0.3604 model score -0.3615 model score -0.3620 model score -0.3806 model score -0.3716 model score -0.3733 model score -0.3733 model score -0.3793 model score -0.3674 model score -0.3683 model score -0.3781 model score -0.3652 model score -0.3881 model score -0.3806 model score -0.3872 model score -0.2991 model score -0.2668 model score -0.0221 model score -0.3869 model score -0.3847 model score -0.3326 model score -0.2938 model score -0.0799 model score -0.3865 model score -0.3794 model score -0.3848 model score -0.3806 model score -0.3793 model score -0.3871 model score -0.3697 model score -0.1434 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.3670 model score 0.1433 model score 0.5583 model score -0.1621 model score 0.5438 model score -0.3652 model score -0.3332 model score -0.0115 model score -0.0964 model score -0.0971 model score -0.3660 model score -0.3379 model score 0.0025 model score -0.0409 model score -0.1666 model score -0.3700 model score -0.3238 model score -0.1188 model score -0.0451 model score -0.3818 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.3753 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.3778 model score -0.3702 model score -0.3805 model score -0.3831 model score -0.3721 model score -0.3851 model score -0.3517 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score -0.3860 model score -0.0648 model score -0.2757 model score -0.1215 model score 0.1800 model score 1.4681 model score 1.9005 model score 2.0249 model score 1.6266 model score -0.1027 model score 0.1912 model score -0.0448 model score 0.0319 model score 0.2256 model score -0.0300 model score -0.3345 model score -0.3564 model score -0.3276 model score 0.4108 model score -0.1317 model score -0.3478 model score 0.1932 model score -0.0010 model score -0.1459 model score 0.3106 model score -0.3617 weight: 0.9365 eval: -0.2365 min: -0.4441 max: 2.4975 weight: 0.9365 eval: -0.2365 min: -0.4441 max: 2.4975 weight: 0.9365 eval: -0.2365 min: -0.4441 max: 2.4975 weight: 0.9365 eval: -0.2365 min: -0.4441 max: 2.4975 weight: 0.9365 eval: -0.2365 min: -0.4441 max: 2.4975 weight: 0.9365 eval: -0.2365 min: -0.4441 max: 2.4975 weight: 0.9365 eval: -0.2365 min: -0.4441 max: 2.4975 weight: 0.9820 eval: -0.3853 min: -0.4441 max: 2.4975 weight: 0.9821 eval: -0.3856 min: -0.4441 max: 2.4975 weight: 0.9793 eval: -0.3766 min: -0.4441 max: 2.4975 weight: 0.9468 eval: -0.2702 min: -0.4441 max: 2.4975 weight: 0.9813 eval: -0.3832 min: -0.4441 max: 2.4975 weight: 0.3174 eval: 1.7871 min: -0.4441 max: 2.4975 weight: 0.4395 eval: 1.3880 min: -0.4441 max: 2.4975 weight: 0.4032 eval: 1.5066 min: -0.4441 max: 2.4975 weight: 0.4496 eval: 1.3549 min: -0.4441 max: 2.4975 weight: 0.4172 eval: 1.4608 min: -0.4441 max: 2.4975 weight: 0.9832 eval: -0.3892 min: -0.4441 max: 2.4975 weight: 0.9811 eval: -0.3823 min: -0.4441 max: 2.4975 weight: 0.9802 eval: -0.3793 min: -0.4441 max: 2.4975 weight: 0.9787 eval: -0.3744 min: -0.4441 max: 2.4975 weight: 0.6268 eval: 0.7757 min: -0.4441 max: 2.4975 weight: 0.5849 eval: 0.9128 min: -0.4441 max: 2.4975 weight: 0.9704 eval: -0.3474 min: -0.4441 max: 2.4975 weight: 0.9719 eval: -0.3524 min: -0.4441 max: 2.4975 weight: 0.9724 eval: -0.3538 min: -0.4441 max: 2.4975 weight: 0.9769 eval: -0.3686 min: -0.4441 max: 2.4975 weight: 0.9746 eval: -0.3611 min: -0.4441 max: 2.4975 weight: 0.9745 eval: -0.3609 min: -0.4441 max: 2.4975 weight: 0.9770 eval: -0.3691 min: -0.4441 max: 2.4975 weight: 0.9548 eval: -0.2964 min: -0.4441 max: 2.4975 weight: 0.9214 eval: -0.1873 min: -0.4441 max: 2.4975 weight: 0.7428 eval: 0.3966 min: -0.4441 max: 2.4975 weight: 0.7728 eval: 0.2986 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.9738 eval: -0.3586 min: -0.4441 max: 2.4975 weight: 0.9676 eval: -0.3383 min: -0.4441 max: 2.4975 weight: 0.9711 eval: -0.3497 min: -0.4441 max: 2.4975 weight: 0.9653 eval: -0.3307 min: -0.4441 max: 2.4975 weight: 0.9736 eval: -0.3579 min: -0.4441 max: 2.4975 weight: 0.9760 eval: -0.3657 min: -0.4441 max: 2.4975 weight: 0.9749 eval: -0.3620 min: -0.4441 max: 2.4975 weight: 0.9746 eval: -0.3611 min: -0.4441 max: 2.4975 weight: 0.9724 eval: -0.3539 min: -0.4441 max: 2.4975 weight: 0.9719 eval: -0.3524 min: -0.4441 max: 2.4975 weight: 0.9820 eval: -0.3853 min: -0.4441 max: 2.4975 weight: 0.9821 eval: -0.3856 min: -0.4441 max: 2.4975 weight: 0.9793 eval: -0.3766 min: -0.4441 max: 2.4975 weight: 0.9466 eval: -0.2695 min: -0.4441 max: 2.4975 weight: 0.9813 eval: -0.3832 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.1000 eval: 2.4975 min: -0.4441 max: 2.4975 weight: 0.2122 eval: 2.1310 min: -0.4441 max: 2.4975 weight: 0.1523 eval: 2.3265 min: -0.4441 max: 2.4975 weight: 0.2144 eval: 2.1237 min: -0.4441 max: 2.4975 weight: 0.1878 eval: 2.2105 min: -0.4441 max: 2.4975 weight: 0.9724 eval: -0.3540 min: -0.4441 max: 2.4975 weight: 0.6625 eval: 0.6589 min: -0.4441 max: 2.4975 weight: 0.8164 eval: 0.1560 min: -0.4441 max: 2.4975 weight: 0.8086 eval: 0.1814 min: -0.4441 max: 2.4975 weight: 0.5942 eval: 0.8822 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 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-0.3816 min: -0.4441 max: 2.4975 weight: 0.9467 eval: -0.2698 min: -0.4441 max: 2.4975 weight: 0.3718 eval: 1.6092 min: -0.4441 max: 2.4975 weight: 0.4109 eval: 1.4814 min: -0.4441 max: 2.4975 weight: 0.9559 eval: -0.2998 min: -0.4441 max: 2.4975 weight: 0.9517 eval: -0.2864 min: -0.4441 max: 2.4975 weight: 0.9519 eval: -0.2868 min: -0.4441 max: 2.4975 weight: 0.6308 eval: 0.7625 min: -0.4441 max: 2.4975 weight: 0.7995 eval: 0.2111 min: -0.4441 max: 2.4975 weight: 0.9763 eval: -0.3666 min: -0.4441 max: 2.4975 weight: 0.9781 eval: -0.3726 min: -0.4441 max: 2.4975 weight: 0.8889 eval: -0.0810 min: -0.4441 max: 2.4975 weight: 0.8783 eval: -0.0465 min: -0.4441 max: 2.4975 weight: 0.8394 eval: 0.0809 min: -0.4441 max: 2.4975 weight: 0.9763 eval: -0.3666 min: -0.4441 max: 2.4975 weight: 0.9774 eval: -0.3701 min: -0.4441 max: 2.4975 weight: 0.8783 eval: -0.0465 min: -0.4441 max: 2.4975 weight: 0.9085 eval: -0.1452 min: -0.4441 max: 2.4975 weight: 0.7842 eval: 0.2611 min: -0.4441 max: 2.4975 weight: 1.0000 eval: -0.4441 min: -0.4441 max: 2.4975 weight: 0.9701 eval: -0.3464 min: -0.4441 max: 2.4975 weight: 0.9851 eval: -0.3954 min: -0.4441 max: 2.4975 weight: 0.9803 eval: -0.3796 min: -0.4441 max: 2.4975 weight: 0.9563 eval: -0.3014 min: -0.4441 max: 2.4975 weight: 0.9773 eval: -0.3700 min: -0.4441 max: 2.4975 weight: 0.9664 eval: -0.3345 min: -0.4441 max: 2.4975 weight: 0.9731 eval: -0.3561 min: -0.4441 max: 2.4975 weight: 0.9692 eval: -0.3435 min: -0.4441 max: 2.4975 weight: 0.9711 eval: -0.3498 min: -0.4441 max: 2.4975 weight: 0.9664 eval: -0.3345 min: -0.4441 max: 2.4975 weight: 0.9774 eval: -0.3702 min: -0.4441 max: 2.4975 weight: 0.8846 eval: -0.0671 min: -0.4441 max: 2.4975 weight: 0.9372 eval: -0.2390 min: -0.4441 max: 2.4975 weight: 0.9482 eval: -0.2748 min: -0.4441 max: 2.4975 weight: 0.9769 eval: -0.3686 min: -0.4441 max: 2.4975 weight: 0.9817 eval: -0.3843 min: -0.4441 max: 2.4975 weight: 0.9783 eval: -0.3733 min: -0.4441 max: 2.4975 weight: 0.9803 eval: -0.3796 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min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.9764 eval: -0.3670 min: -0.4441 max: 2.4975 weight: 0.8203 eval: 0.1433 min: -0.4441 max: 2.4975 weight: 0.6933 eval: 0.5583 min: -0.4441 max: 2.4975 weight: 0.9137 eval: -0.1621 min: -0.4441 max: 2.4975 weight: 0.6977 eval: 0.5438 min: -0.4441 max: 2.4975 weight: 0.9759 eval: -0.3652 min: -0.4441 max: 2.4975 weight: 0.9661 eval: -0.3332 min: -0.4441 max: 2.4975 weight: 0.8676 eval: -0.0115 min: -0.4441 max: 2.4975 weight: 0.8936 eval: -0.0964 min: -0.4441 max: 2.4975 weight: 0.8938 eval: -0.0971 min: -0.4441 max: 2.4975 weight: 0.9761 eval: -0.3660 min: -0.4441 max: 2.4975 weight: 0.9675 eval: -0.3379 min: -0.4441 max: 2.4975 weight: 0.8633 eval: 0.0025 min: -0.4441 max: 2.4975 weight: 0.8766 eval: -0.0409 min: -0.4441 max: 2.4975 weight: 0.9151 eval: -0.1666 min: -0.4441 max: 2.4975 weight: 0.9773 eval: -0.3700 min: -0.4441 max: 2.4975 weight: 0.9632 eval: -0.3238 min: -0.4441 max: 2.4975 weight: 0.9005 eval: -0.1188 min: -0.4441 max: 2.4975 weight: 0.8779 eval: -0.0451 min: -0.4441 max: 2.4975 weight: 0.9809 eval: -0.3818 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.9789 eval: -0.3753 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.9797 eval: -0.3778 min: -0.4441 max: 2.4975 weight: 0.9774 eval: -0.3702 min: -0.4441 max: 2.4975 weight: 0.9805 eval: -0.3805 min: -0.4441 max: 2.4975 weight: 0.9813 eval: -0.3831 min: -0.4441 max: 2.4975 weight: 0.9780 eval: -0.3721 min: -0.4441 max: 2.4975 weight: 0.9819 eval: -0.3851 min: -0.4441 max: 2.4975 weight: 0.9717 eval: -0.3517 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.4734 eval: 1.2771 min: -0.4441 max: 2.4975 weight: 0.9822 eval: -0.3860 min: -0.4441 max: 2.4975 weight: 0.8839 eval: -0.0648 min: -0.4441 max: 2.4975 weight: 0.9485 eval: -0.2757 min: -0.4441 max: 2.4975 weight: 0.9013 eval: -0.1215 min: -0.4441 max: 2.4975 weight: 0.8091 eval: 0.1800 min: -0.4441 max: 2.4975 weight: 0.4150 eval: 1.4681 min: -0.4441 max: 2.4975 weight: 0.2827 eval: 1.9005 min: -0.4441 max: 2.4975 weight: 0.2446 eval: 2.0249 min: -0.4441 max: 2.4975 weight: 0.3665 eval: 1.6266 min: -0.4441 max: 2.4975 weight: 0.8955 eval: -0.1027 min: -0.4441 max: 2.4975 weight: 0.8056 eval: 0.1912 min: -0.4441 max: 2.4975 weight: 0.8778 eval: -0.0448 min: -0.4441 max: 2.4975 weight: 0.8543 eval: 0.0319 min: -0.4441 max: 2.4975 weight: 0.7951 eval: 0.2256 min: -0.4441 max: 2.4975 weight: 0.8733 eval: -0.0300 min: -0.4441 max: 2.4975 weight: 0.9665 eval: -0.3345 min: -0.4441 max: 2.4975 weight: 0.9731 eval: -0.3564 min: -0.4441 max: 2.4975 weight: 0.9643 eval: -0.3276 min: -0.4441 max: 2.4975 weight: 0.7384 eval: 0.4108 min: -0.4441 max: 2.4975 weight: 0.9044 eval: -0.1317 min: -0.4441 max: 2.4975 weight: 0.9705 eval: -0.3478 min: -0.4441 max: 2.4975 weight: 0.8050 eval: 0.1932 min: -0.4441 max: 2.4975 weight: 0.8644 eval: -0.0010 min: -0.4441 max: 2.4975 weight: 0.9088 eval: -0.1459 min: -0.4441 max: 2.4975 weight: 0.7691 eval: 0.3106 min: -0.4441 max: 2.4975 weight: 0.9748 eval: -0.3617 min: -0.4441 max: 2.4975 Adding 6459 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -318.6482, CN propb: -318.6482 weights: 0.5070 constraints: 406 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 406 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 406 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 6053 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 6053 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 6459 # command: