# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0343/ # command:# Making conformation for sequence T0343 numbered 1 through 104 Created new target T0343 from T0343.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0343/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0343//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0343/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0343//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0343/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0343/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0343/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ygsA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2ygsA expands to /projects/compbio/data/pdb/2ygs.pdb.gz 2ygsA:# T0343 read from 2ygsA/merged-good-all-a2m # 2ygsA read from 2ygsA/merged-good-all-a2m # adding 2ygsA to template set # found chain 2ygsA in template set T0343 54 :NVQNYREAVEW 2ygsA 45 :NEPTQQQRAAM # choosing archetypes in rotamer library T0343 68 :VLERIRD 2ygsA 56 :LIKMILK T0343 87 :APPKVMKRLSLALQK 2ygsA 63 :KDNDSYVSFYNALLH Number of specific fragments extracted= 3 number of extra gaps= 0 total=3 Number of alignments=1 # 2ygsA read from 2ygsA/merged-good-all-a2m # found chain 2ygsA in template set T0343 5 :EILRKEGFLDLGE 2ygsA 27 :DHMISDGFLTISE T0343 54 :NVQNYREAVEWA 2ygsA 45 :NEPTQQQRAAML T0343 69 :LERIRD 2ygsA 57 :IKMILK T0343 87 :APPKVMKRLSLALQK 2ygsA 63 :KDNDSYVSFYNALLH Number of specific fragments extracted= 4 number of extra gaps= 0 total=7 Number of alignments=2 # 2ygsA read from 2ygsA/merged-good-all-a2m # found chain 2ygsA in template set T0343 5 :EILRKEGFLDLG 2ygsA 27 :DHMISDGFLTIS T0343 48 :KVE 2ygsA 42 :KVR T0343 54 :NVQNYREAVE 2ygsA 45 :NEPTQQQRAA T0343 67 :EVLERIRDGE 2ygsA 55 :MLIKMILKKD T0343 89 :PKVMKRLSLALQK 2ygsA 65 :NDSYVSFYNALLH Number of specific fragments extracted= 5 number of extra gaps= 0 total=12 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2eu9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2eu9A expands to /projects/compbio/data/pdb/2eu9.pdb.gz 2eu9A:Skipped atom 900, because occupancy 0.5 <= existing 0.500 in 2eu9A Skipped atom 902, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 904, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 939, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 941, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 943, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 1288, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 1292, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 1294, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 1296, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 1298, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 1300, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 1947, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 1951, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 1953, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 1955, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 1957, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 1959, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2057, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2061, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2063, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2065, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2067, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2069, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2171, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2173, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2175, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2177, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2323, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2327, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2329, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2331, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2333, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2504, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2508, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2510, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2512, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2514, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2516, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2586, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2605, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2607, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2609, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2611, because occupancy 0.500 <= existing 0.500 in 2eu9A Skipped atom 2613, because occupancy 0.500 <= existing 0.500 in 2eu9A # T0343 read from 2eu9A/merged-good-all-a2m # 2eu9A read from 2eu9A/merged-good-all-a2m # adding 2eu9A to template set # found chain 2eu9A in template set T0343 15 :LGEFIVE 2eu9A 153 :QERYEIV T0343 22 :LVY 2eu9A 168 :GKV T0343 36 :LAIYD 2eu9A 171 :VECLD T0343 41 :KKGDEWYKVEEAPNVQNYREAVEWAIEVLERIRD 2eu9A 177 :ARGKSQVALKIIRNVGKYREAARLEINVLKKIKE Number of specific fragments extracted= 4 number of extra gaps= 0 total=16 Number of alignments=4 # 2eu9A read from 2eu9A/merged-good-all-a2m # found chain 2eu9A in template set T0343 16 :GEFIVE 2eu9A 154 :ERYEIV T0343 22 :LVY 2eu9A 168 :GKV T0343 36 :LAIYD 2eu9A 171 :VECLD T0343 41 :KKGDEWYKVEEAPNVQNYREAVEWAIEVLERIRD 2eu9A 177 :ARGKSQVALKIIRNVGKYREAARLEINVLKKIKE Number of specific fragments extracted= 4 number of extra gaps= 0 total=20 Number of alignments=5 # 2eu9A read from 2eu9A/merged-good-all-a2m # found chain 2eu9A in template set T0343 16 :GEFIVELVYIDCPC 2eu9A 154 :ERYEIVGNLGEGTF T0343 33 :PPTLAIYD 2eu9A 168 :GKVVECLD T0343 41 :KKGDEWYKVEEAPNVQNYREAVEWAIEVLERIRD 2eu9A 177 :ARGKSQVALKIIRNVGKYREAARLEINVLKKIKE Number of specific fragments extracted= 3 number of extra gaps= 0 total=23 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1zxfA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1zxfA expands to /projects/compbio/data/pdb/1zxf.pdb.gz 1zxfA:# T0343 read from 1zxfA/merged-good-all-a2m # 1zxfA read from 1zxfA/merged-good-all-a2m # adding 1zxfA to template set # found chain 1zxfA in template set T0343 19 :IVELVYIDCPCEPIP 1zxfA 76 :TLVIGWRLNGFGRID T0343 34 :P 1zxfA 95 :S T0343 35 :TLAIYDKKGDEW 1zxfA 98 :TVTFVADGQKKT T0343 47 :YKVEEAPNVQNYREAV 1zxfA 111 :VDVEHTHFDRMGTKHA T0343 66 :IEVLERIRDG 1zxfA 127 :KRVRNGMDKG T0343 89 :PKVMKRLSLALQK 1zxfA 138 :PTILQSFQDKIDE Number of specific fragments extracted= 6 number of extra gaps= 0 total=29 Number of alignments=7 # 1zxfA read from 1zxfA/merged-good-all-a2m # found chain 1zxfA in template set T0343 19 :IVELVYIDCPCEPIP 1zxfA 76 :TLVIGWRLNGFGRID T0343 34 :PTLAIY 1zxfA 95 :SEFTVT T0343 40 :DKKGDEW 1zxfA 103 :ADGQKKT T0343 47 :YKVEEAPNVQNYRE 1zxfA 111 :VDVEHTHFDRMGTK T0343 64 :WAIEVLERIRDG 1zxfA 125 :HAKRVRNGMDKG T0343 88 :PPKVMKRLSLALQKL 1zxfA 137 :WPTILQSFQDKIDEE Number of specific fragments extracted= 6 number of extra gaps= 0 total=35 Number of alignments=8 # 1zxfA read from 1zxfA/merged-good-all-a2m # found chain 1zxfA in template set T0343 15 :LGEFIVELVYIDCPCE 1zxfA 74 :PDTLVIGWRLNGFGRI T0343 31 :PIPPTLAIYDKKGDEW 1zxfA 94 :SSEFTVTFVADGQKKT T0343 47 :YKVEEAPNV 1zxfA 113 :VEHTHFDRM T0343 58 :YREA 1zxfA 122 :GTKH T0343 65 :AIEVLERIRDG 1zxfA 126 :AKRVRNGMDKG T0343 88 :PPKVMKRLSLALQK 1zxfA 137 :WPTILQSFQDKIDE Number of specific fragments extracted= 6 number of extra gaps= 0 total=41 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wbpA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wbpA expands to /projects/compbio/data/pdb/1wbp.pdb.gz 1wbpA:# T0343 read from 1wbpA/merged-good-all-a2m # 1wbpA read from 1wbpA/merged-good-all-a2m # adding 1wbpA to template set # found chain 1wbpA in template set T0343 9 :KEGFLDLGEFIVE 1wbpA 71 :KIGDLFNGRYHVI T0343 25 :IDCPCEPIPPTLAIYDKKGDEWYKVEEAPNVQNYREAVEWAIEVLERIRDGE 1wbpA 84 :RKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSD Number of specific fragments extracted= 2 number of extra gaps= 0 total=43 Number of alignments=10 # 1wbpA read from 1wbpA/merged-good-all-a2m # found chain 1wbpA in template set T0343 9 :KEGFLDLGEFIVE 1wbpA 71 :KIGDLFNGRYHVI T0343 25 :IDCPCEPIPPTLAIYDKKGDEWYKVEEAPNVQNYREAVEWAIEVLERIRDGE 1wbpA 84 :RKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSD Number of specific fragments extracted= 2 number of extra gaps= 0 total=45 Number of alignments=11 # 1wbpA read from 1wbpA/merged-good-all-a2m # found chain 1wbpA in template set T0343 9 :KEGFLDLGEFIV 1wbpA 71 :KIGDLFNGRYHV T0343 24 :YIDCPCEPIPPTLAIYDKKGDEWYKVEEAPNVQNYREAVEWAIEVLERIRDGE 1wbpA 83 :IRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSD Number of specific fragments extracted= 2 number of extra gaps= 0 total=47 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1dc1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0343 read from 1dc1A/merged-good-all-a2m # 1dc1A read from 1dc1A/merged-good-all-a2m # found chain 1dc1A in training set Warning: unaligning (T0343)C29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0343 17 :EFIVELVYIDCP 1dc1A 208 :KKNVDICLFNCE T0343 36 :LAIYD 1dc1A 236 :LLLGE T0343 51 :EAPNVQNYREAVEWAIEVLERIRD 1dc1A 243 :GGIDPAGADEHWKTANTALTRIRN T0343 75 :GENVKLVSLDGPAPPKVMKRLSLALQK 1dc1A 272 :GLSPKTIFIGAAIEHSMAEEIWDQLQS Number of specific fragments extracted= 4 number of extra gaps= 0 total=51 Number of alignments=13 # 1dc1A read from 1dc1A/merged-good-all-a2m # found chain 1dc1A in training set Warning: unaligning (T0343)C29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0343 17 :EFIVELVYIDCP 1dc1A 208 :KKNVDICLFNCE T0343 36 :LAIYD 1dc1A 236 :LLLGE T0343 51 :EAPNVQNYREAVEWAIEVLERIR 1dc1A 243 :GGIDPAGADEHWKTANTALTRIR T0343 74 :DGENVKLVSLDGPAPPKVMKRLSLALQK 1dc1A 271 :KGLSPKTIFIGAAIEHSMAEEIWDQLQS Number of specific fragments extracted= 4 number of extra gaps= 0 total=55 Number of alignments=14 # 1dc1A read from 1dc1A/merged-good-all-a2m # found chain 1dc1A in training set Warning: unaligning (T0343)G43 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (1dc1A)Q230 T0343 17 :EFIVELVYI 1dc1A 193 :GKHRTLMYN T0343 26 :DCPCEPIPPTLAIYDKK 1dc1A 203 :TVSLVKKNVDICLFNCE T0343 52 :APNVQNYREAVEWAIEVLERIRD 1dc1A 244 :GIDPAGADEHWKTANTALTRIRN T0343 75 :GENVKLVSLDGPAPPKVMKRLSLALQK 1dc1A 272 :GLSPKTIFIGAAIEHSMAEEIWDQLQS Number of specific fragments extracted= 4 number of extra gaps= 0 total=59 Number of alignments=15 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2ap1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2ap1A expands to /projects/compbio/data/pdb/2ap1.pdb.gz 2ap1A:Skipped atom 67, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 69, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 71, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 319, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 655, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 728, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 730, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 732, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 734, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 736, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 738, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 740, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 742, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 744, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 746, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 748, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 759, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 763, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 765, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 767, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 769, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 833, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 837, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 839, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 841, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 843, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1053, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1055, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1376, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1380, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1382, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1384, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1386, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1388, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1390, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1392, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1718, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1722, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1724, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1726, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1728, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1730, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1869, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1873, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1875, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1877, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1983, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1987, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1989, because occupancy 0.500 <= existing 0.500 in 2ap1A Skipped atom 1991, because occupancy 0.500 <= existing 0.500 in 2ap1A # T0343 read from 2ap1A/merged-good-all-a2m # 2ap1A read from 2ap1A/merged-good-all-a2m # adding 2ap1A to template set # found chain 2ap1A in template set Warning: unaligning (T0343)G16 because first residue in template chain is (2ap1A)N-1 T0343 17 :EFIVELV 2ap1A 0 :AMYYGFD T0343 25 :IDCP 2ap1A 7 :IGGT T0343 34 :PTLAIYDKK 2ap1A 12 :IALGVFDST T0343 43 :GDEWYKVEEAP 2ap1A 22 :RLQWEKRVPTP T0343 55 :VQNYREAVEWAIEVLERIRD 2ap1A 33 :HTSYSAFLDAVCELVEEADQ T0343 75 :GENVKL 2ap1A 55 :GVKGSV T0343 81 :VSLDG 2ap1A 62 :IGIPG Number of specific fragments extracted= 7 number of extra gaps= 0 total=66 Number of alignments=16 # 2ap1A read from 2ap1A/merged-good-all-a2m # found chain 2ap1A in template set Warning: unaligning (T0343)G16 because first residue in template chain is (2ap1A)N-1 T0343 17 :EFIVELV 2ap1A 0 :AMYYGFD T0343 25 :IDCP 2ap1A 7 :IGGT T0343 33 :PPTLAIYDKK 2ap1A 11 :KIALGVFDST T0343 43 :GDEWYKVEEAP 2ap1A 22 :RLQWEKRVPTP T0343 55 :VQNYREAVEWAIEVLERIRD 2ap1A 33 :HTSYSAFLDAVCELVEEADQ T0343 75 :GENVK 2ap1A 55 :GVKGS Number of specific fragments extracted= 6 number of extra gaps= 0 total=72 Number of alignments=17 # 2ap1A read from 2ap1A/merged-good-all-a2m # found chain 2ap1A in template set Warning: unaligning (T0343)G16 because first residue in template chain is (2ap1A)N-1 T0343 17 :EFIVELVYIDCP 2ap1A 0 :AMYYGFDIGGTK T0343 34 :PTLAIYDKK 2ap1A 12 :IALGVFDST T0343 43 :GDEWYKVEEAP 2ap1A 22 :RLQWEKRVPTP T0343 55 :VQNYREAVEWAIEVLERIRD 2ap1A 33 :HTSYSAFLDAVCELVEEADQ T0343 75 :GENVKL 2ap1A 55 :GVKGSV T0343 81 :VSLDGPAPPK 2ap1A 62 :IGIPGMPETE T0343 91 :VMKRLSLAL 2ap1A 88 :LRADLSARL Number of specific fragments extracted= 7 number of extra gaps= 0 total=79 Number of alignments=18 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1jx4A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0343 read from 1jx4A/merged-good-all-a2m # 1jx4A read from 1jx4A/merged-good-all-a2m # found chain 1jx4A in training set Number of specific fragments extracted= 0 number of extra gaps= 0 total=79 # 1jx4A read from 1jx4A/merged-good-all-a2m # found chain 1jx4A in training set T0343 22 :LV 1jx4A 283 :AI T0343 35 :TLAIYDKKGDEWYKVEEAPNVQNYREAVEWAIEVLERIRDGENVKL 1jx4A 285 :HVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKI Number of specific fragments extracted= 2 number of extra gaps= 0 total=81 Number of alignments=19 # 1jx4A read from 1jx4A/merged-good-all-a2m # found chain 1jx4A in training set T0343 30 :EPIPP 1jx4A 277 :DKRIP T0343 35 :TLAIYDKKGDEWYKVEEAPNVQNYREAVEWAIEVLERIRD 1jx4A 285 :HVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILE Number of specific fragments extracted= 2 number of extra gaps= 0 total=83 Number of alignments=20 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wnaA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0343 read from 1wnaA/merged-good-all-a2m # 1wnaA read from 1wnaA/merged-good-all-a2m # found chain 1wnaA in training set T0343 4 :REILRKE 1wnaA 14 :LEALKAA T0343 11 :GFLDLGEFIVELV 1wnaA 22 :GGLKLSEAKVYLI T0343 25 :IDCPCEPIPPTLAIYDKKGDEWYKVEEA 1wnaA 35 :TDWQDKRDQARYALLLHTGKKDLLVPDA T0343 53 :PNVQNYREAVEWAIEVLER 1wnaA 65 :PAFPGGEEALSELVGLLLA T0343 73 :RDGENVKLVSLDGP 1wnaA 84 :QGARRFYEAVVSPG T0343 87 :APPKVMKRLSL 1wnaA 106 :PPEELLKRVMA Number of specific fragments extracted= 6 number of extra gaps= 0 total=89 Number of alignments=21 # 1wnaA read from 1wnaA/merged-good-all-a2m # found chain 1wnaA in training set T0343 5 :EILRKE 1wnaA 15 :EALKAA T0343 11 :GFLDLGEFIVELV 1wnaA 22 :GGLKLSEAKVYLI T0343 25 :IDCPCEPIPPTLAIYDKKGDEWYKVEEA 1wnaA 35 :TDWQDKRDQARYALLLHTGKKDLLVPDA T0343 53 :PNVQNYREAVEWAIEVLER 1wnaA 65 :PAFPGGEEALSELVGLLLA T0343 73 :RDGENVKLVSLDGP 1wnaA 84 :QGARRFYEAVVSPG T0343 87 :APPKVMKRLSL 1wnaA 106 :PPEELLKRVMA Number of specific fragments extracted= 6 number of extra gaps= 0 total=95 Number of alignments=22 # 1wnaA read from 1wnaA/merged-good-all-a2m # found chain 1wnaA in training set T0343 4 :REILRKE 1wnaA 14 :LEALKAA T0343 11 :GFLDLGEFIVELVYIDCPCE 1wnaA 22 :GGLKLSEAKVYLITDWQDKR T0343 31 :PIPPTLAIYDKKGDEWYKVEEAPNVQNYREAVEWAIEVLER 1wnaA 43 :QARYALLLHTGKKDLLVPDAFGPAFPGGEEALSELVGLLLA T0343 73 :RDGENVKLVSLDGP 1wnaA 84 :QGARRFYEAVVSPG T0343 87 :APPKVMKRLSL 1wnaA 106 :PPEELLKRVMA Number of specific fragments extracted= 5 number of extra gaps= 0 total=100 Number of alignments=23 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1hq0A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1hq0A expands to /projects/compbio/data/pdb/1hq0.pdb.gz 1hq0A:Skipped atom 1151, because occupancy 0.500 <= existing 0.500 in 1hq0A # T0343 read from 1hq0A/merged-good-all-a2m # 1hq0A read from 1hq0A/merged-good-all-a2m # adding 1hq0A to template set # found chain 1hq0A in template set T0343 21 :ELVYID 1hq0A 856 :VIITSG T0343 31 :PIPPTLAIYDKKGDEWYKV 1hq0A 862 :NLSGCTTIVARKEGYIYKV T0343 52 :APNVQNY 1hq0A 885 :TKSLAGF T0343 59 :REAVEWAIEVLERIRDGENVK 1hq0A 894 :TTGVKKAVEVLELLTKEPIPR T0343 83 :LDGPAPPKV 1hq0A 915 :VEGIMSNDF T0343 92 :MKRLSLA 1hq0A 925 :VDYLSEN Number of specific fragments extracted= 6 number of extra gaps= 0 total=106 Number of alignments=24 # 1hq0A read from 1hq0A/merged-good-all-a2m # found chain 1hq0A in template set T0343 21 :ELVYIDC 1hq0A 856 :VIITSGN T0343 32 :IPPTLAIYDKKGDEWYKV 1hq0A 863 :LSGCTTIVARKEGYIYKV T0343 51 :EAPNVQNY 1hq0A 884 :TTKSLAGF T0343 59 :REAVEWAIEVLERIRDGENVK 1hq0A 894 :TTGVKKAVEVLELLTKEPIPR T0343 83 :LDGPAPPKV 1hq0A 915 :VEGIMSNDF T0343 92 :MKRLSLA 1hq0A 925 :VDYLSEN Number of specific fragments extracted= 6 number of extra gaps= 0 total=112 Number of alignments=25 # 1hq0A read from 1hq0A/merged-good-all-a2m # found chain 1hq0A in template set T0343 19 :IVEL 1hq0A 856 :VIIT T0343 24 :Y 1hq0A 860 :S T0343 30 :EPIPPTLAIYDKKGDEWYKV 1hq0A 861 :GNLSGCTTIVARKEGYIYKV T0343 50 :EEAPNV 1hq0A 886 :KSLAGF T0343 57 :NYREAVEWAIEVLERIRDGENVK 1hq0A 892 :TSTTGVKKAVEVLELLTKEPIPR T0343 83 :LDGPAP 1hq0A 915 :VEGIMS T0343 89 :PKVMKRLSLA 1hq0A 922 :DFLVDYLSEN Number of specific fragments extracted= 7 number of extra gaps= 0 total=119 Number of alignments=26 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1r6wA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0343 read from 1r6wA/merged-good-all-a2m # 1r6wA read from 1r6wA/merged-good-all-a2m # found chain 1r6wA in training set T0343 17 :EFIVEL 1r6wA 26 :TRDGLY T0343 36 :LAIYDKKGDEWYKVEEAPNV 1r6wA 32 :VCLREGEREGWGEISPLPGF T0343 56 :QNYREAVEWAIEVLERIRDGENV 1r6wA 54 :ETWEEAQSVLLAWVNNWLAGDCE Number of specific fragments extracted= 3 number of extra gaps= 0 total=122 Number of alignments=27 # 1r6wA read from 1r6wA/merged-good-all-a2m # found chain 1r6wA in training set T0343 17 :EFIVE 1r6wA 26 :TRDGL T0343 35 :TLAIYDKKGDEWYKVEEAPNV 1r6wA 31 :YVCLREGEREGWGEISPLPGF T0343 57 :NYREAVEWAIEVLERIRDGENV 1r6wA 55 :TWEEAQSVLLAWVNNWLAGDCE Number of specific fragments extracted= 3 number of extra gaps= 0 total=125 Number of alignments=28 # 1r6wA read from 1r6wA/merged-good-all-a2m # found chain 1r6wA in training set T0343 21 :ELVYIDCPCE 1r6wA 5 :QVYRWQIPMD T0343 31 :PI 1r6wA 23 :RL T0343 36 :LAIYDKKGDEWYKVEEAPNV 1r6wA 32 :VCLREGEREGWGEISPLPGF T0343 56 :QNYREAVEWAIEVLERIRDGE 1r6wA 54 :ETWEEAQSVLLAWVNNWLAGD T0343 77 :NVKLVSLDGPAPPKVMKRLSL 1r6wA 103 :NYRAAPLCNGDPDDLILKLAD Number of specific fragments extracted= 5 number of extra gaps= 0 total=130 Number of alignments=29 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bkqA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bkqA expands to /projects/compbio/data/pdb/2bkq.pdb.gz 2bkqA:# T0343 read from 2bkqA/merged-good-all-a2m # 2bkqA read from 2bkqA/merged-good-all-a2m # adding 2bkqA to template set # found chain 2bkqA in template set Warning: unaligning (T0343)I32 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bkqA)G100 Warning: unaligning (T0343)P33 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bkqA)G100 Warning: unaligning (T0343)P86 because of BadResidue code BAD_PEPTIDE in next template residue (2bkqA)A154 Warning: unaligning (T0343)A87 because of BadResidue code BAD_PEPTIDE at template residue (2bkqA)A154 T0343 13 :LDLGEF 2bkqA 78 :LDLPNK T0343 19 :IVELVYIDCPCEP 2bkqA 85 :VVFLAINDNSNQA T0343 34 :PTLAIYDKKGDEWYKVEEAPNV 2bkqA 103 :WSLLVYLQDKNSFFHYDSHSRS T0343 58 :YREAVEWAIEVLERIRDGENVKLVSLDG 2bkqA 125 :NSVHAKQVAEKLEAFLGRKGDKLAFVEE T0343 88 :P 2bkqA 155 :P Number of specific fragments extracted= 5 number of extra gaps= 2 total=135 Number of alignments=30 # 2bkqA read from 2bkqA/merged-good-all-a2m # found chain 2bkqA in template set Warning: unaligning (T0343)R8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bkqA)M73 Warning: unaligning (T0343)K9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bkqA)M73 Warning: unaligning (T0343)P33 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bkqA)G100 Warning: unaligning (T0343)P86 because of BadResidue code BAD_PEPTIDE in next template residue (2bkqA)A154 Warning: unaligning (T0343)A87 because of BadResidue code BAD_PEPTIDE at template residue (2bkqA)A154 T0343 3 :WREIL 2bkqA 67 :NPAEI T0343 10 :EG 2bkqA 74 :FL T0343 13 :LDLGEFIVELVYIDCPCEPI 2bkqA 78 :LDLPNKRVVFLAINDNSNQA T0343 34 :PTLAIYDKKGDEWYKVEEAPNV 2bkqA 103 :WSLLVYLQDKNSFFHYDSHSRS T0343 58 :YREAVEWAIEVLERIRDGENVKLVSLDG 2bkqA 125 :NSVHAKQVAEKLEAFLGRKGDKLAFVEE T0343 88 :P 2bkqA 155 :P Number of specific fragments extracted= 6 number of extra gaps= 3 total=141 Number of alignments=31 # 2bkqA read from 2bkqA/merged-good-all-a2m # found chain 2bkqA in template set Warning: unaligning (T0343)R8 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2bkqA)M73 Warning: unaligning (T0343)K9 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2bkqA)M73 Warning: unaligning (T0343)C29 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2bkqA)G100 Warning: unaligning (T0343)E30 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE at template residue (2bkqA)G100 Warning: unaligning (T0343)D84 because of BadResidue code BAD_PEPTIDE in next template residue (2bkqA)A154 Warning: unaligning (T0343)G85 because of BadResidue code BAD_PEPTIDE at template residue (2bkqA)A154 T0343 4 :REIL 2bkqA 68 :PAEI T0343 10 :EGF 2bkqA 74 :FLE T0343 13 :LDLGEF 2bkqA 78 :LDLPNK T0343 19 :IVELVYID 2bkqA 85 :VVFLAIND T0343 27 :CP 2bkqA 96 :QA T0343 32 :IPPTLAIYDKKGDEWYKVEEAPNV 2bkqA 101 :SHWSLLVYLQDKNSFFHYDSHSRS T0343 58 :YREAVEWAIEVLERIRD 2bkqA 125 :NSVHAKQVAEKLEAFLG T0343 75 :GENVKLVSL 2bkqA 144 :GDKLAFVEE T0343 86 :PAP 2bkqA 155 :PAQ Number of specific fragments extracted= 9 number of extra gaps= 3 total=150 Number of alignments=32 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ofuX/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ofuX expands to /projects/compbio/data/pdb/1ofu.pdb.gz 1ofuX:# T0343 read from 1ofuX/merged-good-all-a2m # 1ofuX read from 1ofuX/merged-good-all-a2m # adding 1ofuX to template set # found chain 1ofuX in template set T0343 4 :REILRKEG 1ofuX 89 :HEWLRRAG T0343 13 :LDLGEFIVE 1ofuX 97 :LNRERILLL T0343 54 :NVQNYREAVEWAIEVLE 1ofuX 106 :QAKDNAAALALSCEALR T0343 74 :DGENVKLVSLDGPAPPKVMKRLSLALQK 1ofuX 123 :LGRSHTVVSWLEPLSRAARKQLSRAAQL Number of specific fragments extracted= 4 number of extra gaps= 0 total=154 Number of alignments=33 # 1ofuX read from 1ofuX/merged-good-all-a2m # found chain 1ofuX in template set T0343 4 :REILRKEG 1ofuX 89 :HEWLRRAG T0343 13 :LDLGEFIVE 1ofuX 97 :LNRERILLL T0343 54 :NVQNYREAVEWAIEVLE 1ofuX 106 :QAKDNAAALALSCEALR T0343 74 :DGENVKLVSLDGPAPPKVMKRLSLALQKL 1ofuX 123 :LGRSHTVVSWLEPLSRAARKQLSRAAQLG Number of specific fragments extracted= 4 number of extra gaps= 0 total=158 Number of alignments=34 # 1ofuX read from 1ofuX/merged-good-all-a2m # found chain 1ofuX in template set T0343 4 :REILRKEG 1ofuX 89 :HEWLRRAG T0343 13 :LDLGEFIVE 1ofuX 97 :LNRERILLL T0343 54 :NVQNYREAVEWAIEVLE 1ofuX 106 :QAKDNAAALALSCEALR T0343 74 :DGENVKLVSLDGPAPPKVMKRLSLALQK 1ofuX 123 :LGRSHTVVSWLEPLSRAARKQLSRAAQL Number of specific fragments extracted= 4 number of extra gaps= 0 total=162 Number of alignments=35 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1p90A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0343 read from 1p90A/merged-good-all-a2m # 1p90A read from 1p90A/merged-good-all-a2m # found chain 1p90A in training set T0343 17 :E 1p90A 105 :S T0343 20 :VELVYIDCPCEPIP 1p90A 106 :IRVAIASNNGEQLD T0343 34 :PTLAIY 1p90A 126 :LRFLVY T0343 40 :DKKGDEWYKVEEAPNVQNYREAVEWAIE 1p90A 134 :SAKDASLVDIRSTLDVALAEDKNAWRVE T0343 85 :GPAPPKVMKRLSL 1p90A 172 :VSIGGPAAAKVVR Number of specific fragments extracted= 5 number of extra gaps= 0 total=167 Number of alignments=36 # 1p90A read from 1p90A/merged-good-all-a2m # found chain 1p90A in training set T0343 11 :G 1p90A 104 :G T0343 19 :IVELVYIDCPCEPIP 1p90A 105 :SIRVAIASNNGEQLD T0343 34 :PTLAIYD 1p90A 126 :LRFLVYQ T0343 41 :KKGDEWYKVEEAPNVQNYREAVEWAIE 1p90A 135 :AKDASLVDIRSTLDVALAEDKNAWRVE T0343 68 :VLERIRDGENVKLVSLDGPAPPKVMKRLSLAL 1p90A 178 :AAAKVVRAGIHPLKKPKGCAAQEAIAELQTVM Number of specific fragments extracted= 5 number of extra gaps= 0 total=172 Number of alignments=37 # 1p90A read from 1p90A/merged-good-all-a2m # found chain 1p90A in training set T0343 16 :GEFIVELVYID 1p90A 104 :GSIRVAIASNN T0343 27 :CPCEPIP 1p90A 120 :GHFGSCL T0343 35 :TLAIY 1p90A 127 :RFLVY T0343 40 :DKKGDEWYKVEEAPNVQNYREAVEWAIE 1p90A 134 :SAKDASLVDIRSTLDVALAEDKNAWRVE T0343 71 :RIRDGENVKLV 1p90A 162 :QIQDCQVLYVV T0343 86 :PAPPKVMKRLSLA 1p90A 173 :SIGGPAAAKVVRA Number of specific fragments extracted= 6 number of extra gaps= 0 total=178 Number of alignments=38 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1yw5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1yw5A expands to /projects/compbio/data/pdb/1yw5.pdb.gz 1yw5A:# T0343 read from 1yw5A/merged-good-all-a2m # 1yw5A read from 1yw5A/merged-good-all-a2m # adding 1yw5A to template set # found chain 1yw5A in template set T0343 3 :WREILRKEGFLDL 1yw5A 49 :YIAKFKNNGYKPL T0343 16 :GEFIVELVYIDCPCEPIP 1yw5A 66 :GQVRVSHLLIKNNQSRKP T0343 41 :KKGDE 1yw5A 87 :KSPDG T0343 55 :VQNYREAVEWAIEVLERIRDGEN 1yw5A 93 :SRTRDESIQILKKHLERILSGEV T0343 78 :VKLVS 1yw5A 136 :LGFFS T0343 84 :DGPAPPKVMKRLS 1yw5A 141 :KGQMQPPFEEAAF Number of specific fragments extracted= 6 number of extra gaps= 0 total=184 Number of alignments=39 # 1yw5A read from 1yw5A/merged-good-all-a2m # found chain 1yw5A in template set T0343 3 :WREILRKEGFLDL 1yw5A 49 :YIAKFKNNGYKPL T0343 16 :GEFIVELVYIDCPCEPIP 1yw5A 66 :GQVRVSHLLIKNNQSRKP T0343 41 :KKGDEW 1yw5A 87 :KSPDGI T0343 55 :VQNYREAVEWAIEVLERIRDGENV 1yw5A 93 :SRTRDESIQILKKHLERILSGEVK Number of specific fragments extracted= 4 number of extra gaps= 0 total=188 Number of alignments=40 # 1yw5A read from 1yw5A/merged-good-all-a2m # found chain 1yw5A in template set T0343 2 :TWREILRKEGFLDL 1yw5A 48 :AYIAKFKNNGYKPL T0343 16 :GEFIVELVYIDCPCEPIPP 1yw5A 66 :GQVRVSHLLIKNNQSRKPK T0343 49 :VEEAPNV 1yw5A 85 :SWKSPDG T0343 56 :QNYREAVEWAIEVLERIRDGEN 1yw5A 94 :RTRDESIQILKKHLERILSGEV Number of specific fragments extracted= 4 number of extra gaps= 0 total=192 Number of alignments=41 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1kjkA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1kjkA expands to /projects/compbio/data/pdb/1kjk.pdb.gz 1kjkA:# T0343 read from 1kjkA/merged-good-all-a2m # 1kjkA read from 1kjkA/merged-good-all-a2m # adding 1kjkA to template set # found chain 1kjkA in template set Warning: unaligning (T0343)E76 because last residue in template chain is (1kjkA)H59 T0343 34 :PTLAIYDKKGDEWYKVEE 1kjkA 22 :GYYCYRDPRTGKEFGLGR T0343 57 :NYREAVEWAIEVLERIRDG 1kjkA 40 :DRRIAITEAIQANIELFSG Number of specific fragments extracted= 2 number of extra gaps= 0 total=194 Number of alignments=42 # 1kjkA read from 1kjkA/merged-good-all-a2m # found chain 1kjkA in template set Warning: unaligning (T0343)E76 because last residue in template chain is (1kjkA)H59 T0343 34 :PTLAIYDKKGDEWYKVEE 1kjkA 22 :GYYCYRDPRTGKEFGLGR T0343 57 :NYREAVEWAIEVLERIRDG 1kjkA 40 :DRRIAITEAIQANIELFSG Number of specific fragments extracted= 2 number of extra gaps= 0 total=196 Number of alignments=43 # 1kjkA read from 1kjkA/merged-good-all-a2m # found chain 1kjkA in template set Warning: unaligning (T0343)E76 because last residue in template chain is (1kjkA)H59 T0343 34 :PTLAIYDKKGDEWYKVEE 1kjkA 22 :GYYCYRDPRTGKEFGLGR T0343 57 :NYREAVEWAIEVLERIRDG 1kjkA 40 :DRRIAITEAIQANIELFSG Number of specific fragments extracted= 2 number of extra gaps= 0 total=198 Number of alignments=44 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1eh2/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1eh2 expands to /projects/compbio/data/pdb/1eh2.pdb.gz 1eh2:Warning: there is no chain 1eh2 will retry with 1eh2A # T0343 read from 1eh2/merged-good-all-a2m # 1eh2 read from 1eh2/merged-good-all-a2m # adding 1eh2 to template set # found chain 1eh2 in template set T0343 59 :REAVEWAIEVLERIRDGENVK 1eh2 67 :RDEFAVAMFLVYCALEKEPVP T0343 85 :GPAP 1eh2 88 :MSLP Number of specific fragments extracted= 2 number of extra gaps= 0 total=200 Number of alignments=45 # 1eh2 read from 1eh2/merged-good-all-a2m # found chain 1eh2 in template set T0343 59 :REAVEWAIEVLERIRDGENVK 1eh2 67 :RDEFAVAMFLVYCALEKEPVP T0343 85 :GPAP 1eh2 88 :MSLP Number of specific fragments extracted= 2 number of extra gaps= 0 total=202 Number of alignments=46 # 1eh2 read from 1eh2/merged-good-all-a2m # found chain 1eh2 in template set T0343 59 :REAVEWAIEVLERIRDGE 1eh2 67 :RDEFAVAMFLVYCALEKE T0343 82 :SLDGPAPP 1eh2 85 :PVPMSLPP Number of specific fragments extracted= 2 number of extra gaps= 0 total=204 Number of alignments=47 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1cwwA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1cwwA expands to /projects/compbio/data/pdb/1cww.pdb.gz 1cwwA:# T0343 read from 1cwwA/merged-good-all-a2m # 1cwwA read from 1cwwA/merged-good-all-a2m # adding 1cwwA to template set # found chain 1cwwA in template set T0343 58 :YREAVEWAIE 1cwwA 22 :TSYIMDHMIS T0343 68 :VLERIR 1cwwA 39 :EEEKVR T0343 84 :DGPAPPKVMKRLSLALQ 1cwwA 45 :NEPTQQQRAAMLIKMIL Number of specific fragments extracted= 3 number of extra gaps= 0 total=207 Number of alignments=48 # 1cwwA read from 1cwwA/merged-good-all-a2m # found chain 1cwwA in template set T0343 59 :REAVEWAIE 1cwwA 23 :SYIMDHMIS T0343 68 :VLERIRD 1cwwA 39 :EEEKVRN T0343 85 :GPAPPKVMKRLSLALQ 1cwwA 46 :EPTQQQRAAMLIKMIL Number of specific fragments extracted= 3 number of extra gaps= 0 total=210 Number of alignments=49 # 1cwwA read from 1cwwA/merged-good-all-a2m # found chain 1cwwA in template set T0343 5 :EILRKEGFLDLG 1cwwA 27 :DHMISDGFLTIS T0343 48 :KVE 1cwwA 42 :KVR T0343 54 :NVQNYREAVEWAIEV 1cwwA 45 :NEPTQQQRAAMLIKM T0343 72 :IR 1cwwA 60 :IL Number of specific fragments extracted= 4 number of extra gaps= 0 total=214 Number of alignments=50 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2b49A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2b49A expands to /projects/compbio/data/pdb/2b49.pdb.gz 2b49A:Skipped atom 672, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 676, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 678, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 680, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 682, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 684, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 749, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 753, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 755, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1027, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1031, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1033, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1035, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1037, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1158, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1162, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1164, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1166, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1168, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1171, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1175, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1177, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1179, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1181, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1213, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1217, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1219, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1221, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1223, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1225, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1267, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1271, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1273, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1275, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1416, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1420, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1422, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1425, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1429, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1431, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1488, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1492, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1494, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1496, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1498, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1562, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1564, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1566, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1568, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1570, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1572, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1574, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1576, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1578, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1580, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1582, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1584, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1586, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1588, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1614, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1618, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1620, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1622, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1624, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1731, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1735, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1737, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1739, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1741, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1975, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1979, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1981, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1983, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 1985, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 2011, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 2015, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 2017, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 2020, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 2024, because occupancy 0.500 <= existing 0.500 in 2b49A Skipped atom 2026, because occupancy 0.500 <= existing 0.500 in 2b49A # T0343 read from 2b49A/merged-good-all-a2m # 2b49A read from 2b49A/merged-good-all-a2m # adding 2b49A to template set # found chain 2b49A in template set T0343 11 :GFLDLGEFIVELVYIDCPCE 2b49A 763 :DVMNHGGFHIQCQSEDCTIA T0343 35 :TLAIYDKKGDEWYKVE 2b49A 787 :EMLVTNTQTGEEHTVT T0343 51 :EAPNVQNYREAVEWAIEVLERIRDGENV 2b49A 811 :DHGVPDDSSDFLEFVNYVRSLRVDSEPV Number of specific fragments extracted= 3 number of extra gaps= 0 total=217 Number of alignments=51 # 2b49A read from 2b49A/merged-good-all-a2m # found chain 2b49A in template set T0343 11 :GFLDLGEFIVELVYIDCPCEPIPPTLAIYDKKGDEWYKVE 2b49A 763 :DVMNHGGFHIQCQSEDCTIAYVSREMLVTNTQTGEEHTVT T0343 52 :APNVQNYREAVEWAIEV 2b49A 815 :PDDSSDFLEFVNYVRSL T0343 72 :IRDGE 2b49A 832 :RVDSE Number of specific fragments extracted= 3 number of extra gaps= 0 total=220 Number of alignments=52 # 2b49A read from 2b49A/merged-good-all-a2m # found chain 2b49A in template set T0343 12 :FLDLGEFIVELVYIDCPCE 2b49A 764 :VMNHGGFHIQCQSEDCTIA T0343 32 :IPPTLAIYDKKGDEWYKV 2b49A 784 :VSREMLVTNTQTGEEHTV T0343 50 :EEAPNVQNYREAVEWAIEVLERIRDGENV 2b49A 810 :PDHGVPDDSSDFLEFVNYVRSLRVDSEPV T0343 80 :LVSLDG 2b49A 839 :LVHCSA Number of specific fragments extracted= 4 number of extra gaps= 0 total=224 Number of alignments=53 # Reading fragments from alignment file # Attempting to read fragment alignments from file 3cla/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0343 read from 3cla/merged-good-all-a2m # 3cla read from 3cla/merged-good-all-a2m # found chain 3cla in training set T0343 21 :ELVYI 3cla 82 :ELIVW T0343 30 :EPIPPTLAIYDKKGDEWYKVE 3cla 87 :DSVDPQFTVFHQETETFSALS T0343 52 :APNVQNYREAVEWAIEVLERI 3cla 108 :CPYSSDIDQFMVNYLSVMERY T0343 74 :DGENVKL 3cla 129 :KSDTKLF T0343 83 :LDGPAP 3cla 136 :PQGVTP Number of specific fragments extracted= 5 number of extra gaps= 0 total=229 Number of alignments=54 # 3cla read from 3cla/merged-good-all-a2m # found chain 3cla in training set T0343 21 :ELVYI 3cla 82 :ELIVW T0343 30 :EPIPPTLAIYDKKGDEWYKVE 3cla 87 :DSVDPQFTVFHQETETFSALS T0343 52 :APNVQNYREAVEWAIEVLERIRD 3cla 108 :CPYSSDIDQFMVNYLSVMERYKS T0343 76 :ENVK 3cla 131 :DTKL T0343 82 :SLDGPAP 3cla 135 :FPQGVTP Number of specific fragments extracted= 5 number of extra gaps= 0 total=234 Number of alignments=55 # 3cla read from 3cla/merged-good-all-a2m # found chain 3cla in training set T0343 16 :GEFIV 3cla 81 :DELIV T0343 25 :I 3cla 86 :W T0343 30 :EPIPPTLAIYDKKGDEWYKV 3cla 87 :DSVDPQFTVFHQETETFSAL T0343 51 :EAPNVQNYREAVEWAIEVLERIRDGEN 3cla 107 :SCPYSSDIDQFMVNYLSVMERYKSDTK T0343 78 :VKLVSLDGPAPP 3cla 145 :LNISALPWVNFD Number of specific fragments extracted= 5 number of extra gaps= 0 total=239 Number of alignments=56 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1y74A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1y74A expands to /projects/compbio/data/pdb/1y74.pdb.gz 1y74A:# T0343 read from 1y74A/merged-good-all-a2m # 1y74A read from 1y74A/merged-good-all-a2m # adding 1y74A to template set # found chain 1y74A in template set T0343 57 :NYREAVEWAIEVLERIRD 1y74A 18 :GLERDVSRAVELLERLQR T0343 84 :DGPAPPKVMKRLSLALQ 1y74A 36 :SGELPPQKLQALQRVLQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=241 Number of alignments=57 # 1y74A read from 1y74A/merged-good-all-a2m # found chain 1y74A in template set T0343 57 :NYREAVEWAIEVLERIRD 1y74A 18 :GLERDVSRAVELLERLQR T0343 84 :DGPAPPKVMKRLSLALQ 1y74A 36 :SGELPPQKLQALQRVLQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=243 Number of alignments=58 # 1y74A read from 1y74A/merged-good-all-a2m # found chain 1y74A in template set T0343 57 :NYREAVEWAIEVLERIRDGE 1y74A 18 :GLERDVSRAVELLERLQRSG T0343 86 :PAPPKVMKRLSLALQ 1y74A 38 :ELPPQKLQALQRVLQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=245 Number of alignments=59 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1q8yA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1q8yA expands to /projects/compbio/data/pdb/1q8y.pdb.gz 1q8yA:# T0343 read from 1q8yA/merged-good-all-a2m # 1q8yA read from 1q8yA/merged-good-all-a2m # adding 1q8yA to template set # found chain 1q8yA in template set T0343 9 :KEGFLDLGEFIVELVYIDCPC 1q8yA 149 :KGEPYKDARYILVRKLGWGHF T0343 35 :TLAIYDKKGDEWYKVEEAPNVQNYREAVEWAIEVLERIRDGENV 1q8yA 172 :VWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNT Number of specific fragments extracted= 2 number of extra gaps= 0 total=247 Number of alignments=60 # 1q8yA read from 1q8yA/merged-good-all-a2m # found chain 1q8yA in template set T0343 16 :GEFIVELVYIDCPC 1q8yA 156 :ARYILVRKLGWGHF T0343 35 :TLAIYDKKGDEWYKVEEAPNVQNYREAVEWAIEVLERIRDGENV 1q8yA 172 :VWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNT Number of specific fragments extracted= 2 number of extra gaps= 0 total=249 Number of alignments=61 # 1q8yA read from 1q8yA/merged-good-all-a2m # found chain 1q8yA in template set T0343 22 :LVYIDCPCEPIPPTL 1q8yA 158 :YILVRKLGWGHFSTV T0343 37 :AIYDKKGDEWYKV 1q8yA 174 :LAKDMVNNTHVAM T0343 52 :APNVQNYREAVEWAIEVLERIRDGE 1q8yA 189 :VRGDKVYTEAAEDEIKLLQRVNDAD T0343 88 :PPKVMKRLS 1q8yA 214 :NTKEDSMGA Number of specific fragments extracted= 4 number of extra gaps= 0 total=253 Number of alignments=62 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1euvA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0343 read from 1euvA/merged-good-all-a2m # 1euvA read from 1euvA/merged-good-all-a2m # found chain 1euvA in training set T0343 14 :DLGEFIVELVYIDCPCEP 1euvA 497 :QIDKLDKIFTPINLNQSH T0343 34 :PTLAIYDKKGDEWYKVEEAPNVQN 1euvA 515 :WALGIIDLKKKTIGYVDSLSNGPN T0343 58 :YREAVEWAIEVLERIRDGEN 1euvA 541 :SFAILTDLQKYVMEESKHTI T0343 78 :VKLVSLDGP 1euvA 564 :FDLIHLDCP Number of specific fragments extracted= 4 number of extra gaps= 0 total=257 Number of alignments=63 # 1euvA read from 1euvA/merged-good-all-a2m # found chain 1euvA in training set T0343 14 :DLGEFIVELVYIDCPCEP 1euvA 497 :QIDKLDKIFTPINLNQSH T0343 34 :PTLAIYDKKGDEWYKVEEA 1euvA 515 :WALGIIDLKKKTIGYVDSL T0343 53 :PNVQNYREAVEWAIEVLERIRD 1euvA 536 :GPNAMSFAILTDLQKYVMEESK T0343 75 :GENVKLVSLDGP 1euvA 561 :GEDFDLIHLDCP Number of specific fragments extracted= 4 number of extra gaps= 0 total=261 Number of alignments=64 # 1euvA read from 1euvA/merged-good-all-a2m # found chain 1euvA in training set T0343 14 :DLGEFIVELVYIDCPCE 1euvA 497 :QIDKLDKIFTPINLNQS T0343 33 :PPTLAIYDKKGDEWYKVEEAPNVQN 1euvA 514 :HWALGIIDLKKKTIGYVDSLSNGPN T0343 58 :YREAVEWAIEVLERIRD 1euvA 541 :SFAILTDLQKYVMEESK T0343 75 :GENVKLVSLDGPAPP 1euvA 561 :GEDFDLIHLDCPQQP Number of specific fragments extracted= 4 number of extra gaps= 0 total=265 Number of alignments=65 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2bkrA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2bkrA expands to /projects/compbio/data/pdb/2bkr.pdb.gz 2bkrA:# T0343 read from 2bkrA/merged-good-all-a2m # 2bkrA read from 2bkrA/merged-good-all-a2m # adding 2bkrA to template set # found chain 2bkrA in template set T0343 14 :DLGEF 2bkrA 79 :DLPNK T0343 19 :IVELVYIDCPCEPIP 2bkrA 85 :VVFLAINDNSNQAAG T0343 34 :PTLAIYDKKGDEWYKVEEAPNV 2bkrA 103 :WSLLVYLQDKNSFFHYDSHSRS T0343 58 :YREAVEWAIEVLERIR 2bkrA 125 :NSVHAKQVAEKLEAFL T0343 74 :DGENVKLVSLD 2bkrA 143 :KGDKLAFVEEK T0343 87 :AP 2bkrA 154 :AP Number of specific fragments extracted= 6 number of extra gaps= 0 total=271 Number of alignments=66 # 2bkrA read from 2bkrA/merged-good-all-a2m # found chain 2bkrA in template set T0343 13 :LDLGEF 2bkrA 78 :LDLPNK T0343 19 :IVELVYIDCPCEPIP 2bkrA 85 :VVFLAINDNSNQAAG T0343 34 :PTLAIYDKKGDEWYKVEEAPN 2bkrA 103 :WSLLVYLQDKNSFFHYDSHSR T0343 57 :NYREAVEWAIEVLERIR 2bkrA 124 :SNSVHAKQVAEKLEAFL T0343 74 :DGENVKLVSL 2bkrA 143 :KGDKLAFVEE T0343 86 :PAP 2bkrA 153 :KAP Number of specific fragments extracted= 6 number of extra gaps= 0 total=277 Number of alignments=67 # 2bkrA read from 2bkrA/merged-good-all-a2m # found chain 2bkrA in template set T0343 3 :WREILRK 2bkrA 71 :IAMFLEP T0343 13 :LDLGEF 2bkrA 78 :LDLPNK T0343 19 :IVELVYIDCPCE 2bkrA 85 :VVFLAINDNSNQ T0343 31 :PIPPTLAIYDKKGDEWYKVEEA 2bkrA 100 :GSHWSLLVYLQDKNSFFHYDSH T0343 55 :VQNYREAVEWAIEVLERIR 2bkrA 122 :SRSNSVHAKQVAEKLEAFL T0343 74 :DGENVKLVSLDGPAPP 2bkrA 143 :KGDKLAFVEEKAPAQQ Number of specific fragments extracted= 6 number of extra gaps= 0 total=283 Number of alignments=68 # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0343//projects/compbio/experiments/protein-predict/casp7/T0343/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0343//projects/compbio/experiments/protein-predict/casp7/T0343/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0343/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0343/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0343)I38.CB, (T0343)Y47.CB) [> 3.4868 = 5.8113 < 7.5547] w=1.0000 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)V49.CB) [> 3.4247 = 5.7079 < 7.4202] w=0.8979 to align # Constraint # added constraint: constraint((T0343)A37.CB, (T0343)W46.CB) [> 3.8361 = 6.3934 < 8.3115] w=0.8829 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)V49.CB) [> 3.7756 = 6.2926 < 8.1804] w=0.8346 to align # Constraint # added constraint: constraint((T0343)A37.CB, (T0343)K48.CB) [> 3.8305 = 6.3843 < 8.2995] w=0.8128 to align # Constraint # added constraint: constraint((T0343)I38.CB, (T0343)V49.CB) [> 3.6187 = 6.0311 < 7.8405] w=0.8032 to align # Constraint # added constraint: constraint((T0343)I38.CB, (T0343)K48.CB) [> 4.2575 = 7.0959 < 9.2247] w=0.7844 to align # Constraint # added constraint: constraint((T0343)A37.CB, (T0343)Y47.CB) [> 4.1607 = 6.9345 < 9.0149] w=0.7730 to align # Constraint # added constraint: constraint((T0343)E21.CB, (T0343)I38.CB) [> 4.0314 = 6.7189 < 8.7346] w=0.7412 to align # Constraint # added constraint: constraint((T0343)E21.CB, (T0343)Y39.CB) [> 4.0569 = 6.7615 < 8.7900] w=0.7365 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)I38.CB) [> 3.5949 = 5.9915 < 7.7890] w=0.7237 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)K48.CB) [> 4.0384 = 6.7307 < 8.7499] w=0.7114 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)A37.CB) [> 4.0157 = 6.6929 < 8.7008] w=0.7035 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)K48.CB) [> 3.8773 = 6.4622 < 8.4008] w=0.7001 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)L36.CB) [> 3.8931 = 6.4884 < 8.4350] w=0.6409 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)T35.CB) [> 4.1100 = 6.8500 < 8.9050] w=0.6322 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)E50.CB) [> 3.1550 = 5.2584 < 6.8359] w=0.6310 to align # Constraint # added constraint: constraint((T0343)A37.CB, (T0343)V49.CB) [> 4.3436 = 7.2394 < 9.4112] w=0.6296 to align # Constraint # added constraint: constraint((T0343)E21.CB, (T0343)A37.CB) [> 3.5475 = 5.9125 < 7.6863] w=0.6171 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)L36.CB) [> 3.8817 = 6.4695 < 8.4104] w=0.6056 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)Y39.CB) [> 3.9044 = 6.5074 < 8.4596] w=0.5954 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)K41.CB) [> 3.9484 = 6.5806 < 8.5548] w=0.5874 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)I38.CB) [> 3.9193 = 6.5321 < 8.4917] w=0.5681 to align # Constraint # added constraint: constraint((T0343)F18.CB, (T0343)K41.CB) [> 4.1224 = 6.8706 < 8.9319] w=0.5615 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)Y39.CB) [> 3.1755 = 5.2925 < 6.8802] w=0.5585 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)A37.CB) [> 3.2655 = 5.4426 < 7.0753] w=0.5564 to align # Constraint # added constraint: constraint((T0343)E21.CB, (T0343)L36.CB) [> 4.0947 = 6.8246 < 8.8719] w=0.5562 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)T35.CB) [> 3.2926 = 5.4876 < 7.1339] w=0.5483 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)A37.CB) [> 3.6177 = 6.0295 < 7.8383] w=0.5456 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)L36.CB) [> 3.8210 = 6.3683 < 8.2788] w=0.5350 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)E50.CB) [> 3.9392 = 6.5654 < 8.5350] w=0.5022 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)I38.CB) [> 4.1499 = 6.9164 < 8.9914] w=0.4744 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)P34.CB) [> 3.5969 = 5.9948 < 7.7933] w=0.4730 to align # Constraint # added constraint: constraint((T0343)F18.CB, (T0343)Y39.CB) [> 4.3162 = 7.1937 < 9.3518] w=0.4707 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)T35.CB) [> 3.4827 = 5.8045 < 7.5458] w=0.4670 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)E51.CB) [> 4.0125 = 6.6875 < 8.6937] w=0.4657 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)D40.CB) [> 4.0411 = 6.7351 < 8.7556] w=0.4649 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)Y39.CB) [> 3.9630 = 6.6051 < 8.5866] w=0.4382 to align # Constraint # added constraint: constraint((T0343)E17.CB, (T0343)D40.CB) [> 3.9014 = 6.5023 < 8.4530] w=0.4377 to align # Constraint # added constraint: constraint((T0343)F18.CB, (T0343)D40.CB) [> 3.8347 = 6.3912 < 8.3086] w=0.4303 to align # Constraint # added constraint: constraint((T0343)V55.CB, (T0343)W64.CB) [> 3.2654 = 5.4423 < 7.0750] w=0.3940 to align # Constraint # added constraint: constraint((T0343)D26.CB, (T0343)T35.CB) [> 4.2518 = 7.0863 < 9.2122] w=0.3863 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)P34.CB) [> 4.1746 = 6.9576 < 9.0449] w=0.3830 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)L36.CB) [> 3.5159 = 5.8598 < 7.6178] w=0.3735 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)P34.CB) [> 3.7791 = 6.2985 < 8.1881] w=0.3684 to align # Constraint # added constraint: constraint((T0343)P34.CB, (T0343)A52.CB) [> 3.6104 = 6.0174 < 7.8226] w=0.3683 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)A37.CB) [> 4.5025 = 7.5041 < 9.7554] w=0.3640 to align # Constraint # added constraint: constraint((T0343)G16.CA, (T0343)K41.CB) [> 4.3942 = 7.3237 < 9.5208] w=0.3590 to align # Constraint # added constraint: constraint((T0343)A52.CB, (T0343)A61.CB) [> 4.3236 = 7.2060 < 9.3678] w=0.3567 to align # Constraint # added constraint: constraint((T0343)F18.CB, (T0343)I38.CB) [> 3.0749 = 5.1248 < 6.6623] w=0.3544 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)V91.CB) [> 3.0453 = 5.0755 < 6.5982] w=0.3288 to align # Constraint # added constraint: constraint((T0343)P34.CB, (T0343)E51.CB) [> 4.0078 = 6.6797 < 8.6836] w=0.3247 to align # Constraint # added constraint: constraint((T0343)P33.CB, (T0343)A52.CB) [> 3.7510 = 6.2517 < 8.1272] w=0.3162 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)A61.CB) [> 3.7059 = 6.1766 < 8.0295] w=0.3094 to align # Constraint # added constraint: constraint((T0343)I66.CB, (T0343)V78.CB) [> 3.8828 = 6.4714 < 8.4128] w=0.3017 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)L69.CB) [> 4.0786 = 6.7977 < 8.8370] w=0.2893 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)A65.CB) [> 3.7578 = 6.2630 < 8.1419] w=0.2885 to align # Constraint # added constraint: constraint((T0343)I38.CB, (T0343)L69.CB) [> 4.5099 = 7.5164 < 9.7714] w=0.2807 to align # Constraint # added constraint: constraint((T0343)I38.CB, (T0343)I72.CB) [> 3.3966 = 5.6610 < 7.3594] w=0.2807 to align # Constraint # added constraint: constraint((T0343)Y47.CB, (T0343)L83.CB) [> 2.9876 = 4.9793 < 6.4731] w=0.2770 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)R94.CB) [> 3.9353 = 6.5588 < 8.5265] w=0.2763 to align # Constraint # added constraint: constraint((T0343)P34.CB, (T0343)E50.CB) [> 3.7246 = 6.2077 < 8.0701] w=0.2714 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)L95.CB) [> 4.1361 = 6.8934 < 8.9614] w=0.2695 to align # Constraint # added constraint: constraint((T0343)V49.CB, (T0343)V68.CB) [> 3.3961 = 5.6601 < 7.3581] w=0.2676 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)L36.CB) [> 3.9362 = 6.5603 < 8.5283] w=0.2643 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)K48.CB) [> 4.2975 = 7.1624 < 9.3112] w=0.2610 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)T35.CB) [> 4.2072 = 7.0120 < 9.1155] w=0.2594 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)S82.CB) [> 3.2291 = 5.3819 < 6.9965] w=0.2545 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)S82.CB) [> 4.5469 = 7.5782 < 9.8516] w=0.2491 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)D40.CB) [> 4.1879 = 6.9799 < 9.0738] w=0.2484 to align # Constraint # added constraint: constraint((T0343)L15.CB, (T0343)L69.CB) [> 4.5320 = 7.5534 < 9.8194] w=0.2445 to align # Constraint # added constraint: constraint((T0343)L15.CB, (T0343)R73.CB) [> 3.5742 = 5.9570 < 7.7441] w=0.2445 to align # Constraint # added constraint: constraint((T0343)G16.CA, (T0343)R73.CB) [> 3.5749 = 5.9581 < 7.7455] w=0.2445 to align # Constraint # added constraint: constraint((T0343)V49.CB, (T0343)L83.CB) [> 2.9957 = 4.9928 < 6.4906] w=0.2404 to align # Constraint # added constraint: constraint((T0343)I72.CB, (T0343)L95.CB) [> 3.4609 = 5.7681 < 7.4986] w=0.2377 to align # Constraint # added constraint: constraint((T0343)L69.CB, (T0343)L80.CB) [> 3.2303 = 5.3839 < 6.9990] w=0.2343 to align # Constraint # added constraint: constraint((T0343)L15.CB, (T0343)I72.CB) [> 3.9292 = 6.5487 < 8.5133] w=0.2320 to align # Constraint # added constraint: constraint((T0343)A37.CB, (T0343)A65.CB) [> 3.4253 = 5.7088 < 7.4215] w=0.2320 to align # Constraint # added constraint: constraint((T0343)Y39.CB, (T0343)L69.CB) [> 3.7252 = 6.2087 < 8.0714] w=0.2320 to align # Constraint # added constraint: constraint((T0343)W46.CB, (T0343)I66.CB) [> 2.7439 = 4.5731 < 5.9450] w=0.2320 to align # Constraint # added constraint: constraint((T0343)W46.CB, (T0343)L69.CB) [> 4.5163 = 7.5273 < 9.7854] w=0.2320 to align # Constraint # added constraint: constraint((T0343)W46.CB, (T0343)V81.CB) [> 4.0938 = 6.8231 < 8.8700] w=0.2320 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)Y58.CB) [> 4.0551 = 6.7584 < 8.7860] w=0.2320 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)V62.CB) [> 2.8428 = 4.7380 < 6.1595] w=0.2320 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)L83.CB) [> 3.7636 = 6.2728 < 8.1546] w=0.2320 to align # Constraint # added constraint: constraint((T0343)E63.CB, (T0343)L80.CB) [> 3.8360 = 6.3934 < 8.3114] w=0.2320 to align # Constraint # added constraint: constraint((T0343)I66.CB, (T0343)L80.CB) [> 3.3827 = 5.6378 < 7.3292] w=0.2320 to align # Constraint # added constraint: constraint((T0343)E67.CB, (T0343)V78.CB) [> 3.1410 = 5.2350 < 6.8056] w=0.2284 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)L80.CB) [> 4.2541 = 7.0902 < 9.2172] w=0.2179 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)A37.CB) [> 3.1188 = 5.1980 < 6.7574] w=0.2135 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)Y47.CB) [> 3.6113 = 6.0188 < 7.8244] w=0.2105 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)I38.CB) [> 3.7768 = 6.2947 < 8.1831] w=0.2095 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)P34.CB) [> 3.5998 = 5.9996 < 7.7995] w=0.2094 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)V78.CB) [> 3.0305 = 5.0509 < 6.5661] w=0.2038 to align # Constraint # added constraint: constraint((T0343)E17.CB, (T0343)K42.CB) [> 3.3326 = 5.5544 < 7.2207] w=0.2015 to align # Constraint # added constraint: constraint((T0343)I66.CB, (T0343)L95.CB) [> 3.6730 = 6.1216 < 7.9581] w=0.1986 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)Y39.CB) [> 4.2897 = 7.1495 < 9.2943] w=0.1977 to align # Constraint # added constraint: constraint((T0343)E45.CB, (T0343)L80.CB) [> 4.5222 = 7.5370 < 9.7982] w=0.1954 to align # Constraint # added constraint: constraint((T0343)Y47.CB, (T0343)V81.CB) [> 2.9656 = 4.9426 < 6.4254] w=0.1954 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)V81.CB) [> 4.1626 = 6.9377 < 9.0190] w=0.1954 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)A65.CB) [> 3.9106 = 6.5176 < 8.4729] w=0.1942 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)I72.CB) [> 3.8301 = 6.3835 < 8.2985] w=0.1936 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)R71.CB) [> 4.1995 = 6.9991 < 9.0988] w=0.1919 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)V68.CB) [> 3.5721 = 5.9535 < 7.7396] w=0.1903 to align # Constraint # added constraint: constraint((T0343)Y47.CB, (T0343)I72.CB) [> 4.0001 = 6.6668 < 8.6669] w=0.1895 to align # Constraint # added constraint: constraint((T0343)V49.CB, (T0343)A65.CB) [> 3.2155 = 5.3591 < 6.9669] w=0.1861 to align # Constraint # added constraint: constraint((T0343)I72.CB, (T0343)M92.CB) [> 3.8695 = 6.4492 < 8.3839] w=0.1857 to align # Constraint # added constraint: constraint((T0343)L69.CB, (T0343)L99.CB) [> 3.7095 = 6.1825 < 8.0372] w=0.1814 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)Y58.CB) [> 2.3073 = 3.8454 < 4.9991] w=0.1795 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)A65.CB) [> 3.8010 = 6.3351 < 8.2356] w=0.1783 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)K79.CB) [> 3.8134 = 6.3557 < 8.2624] w=0.1780 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)Y47.CB) [> 3.9816 = 6.6360 < 8.6267] w=0.1775 to align # Constraint # added constraint: constraint((T0343)D26.CB, (T0343)L36.CB) [> 3.8732 = 6.4554 < 8.3920] w=0.1769 to align # Constraint # added constraint: constraint((T0343)V20.CB, (T0343)I72.CB) [> 3.7674 = 6.2790 < 8.1627] w=0.1757 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)A87.CB) [> 3.5521 = 5.9201 < 7.6961] w=0.1716 to align # Constraint # added constraint: constraint((T0343)R59.CB, (T0343)P88.CB) [> 3.6537 = 6.0894 < 7.9162] w=0.1716 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)Y58.CB) [> 4.4589 = 7.4315 < 9.6610] w=0.1712 to align # Constraint # added constraint: constraint((T0343)D26.CB, (T0343)Y58.CB) [> 3.4636 = 5.7727 < 7.5045] w=0.1712 to align # Constraint # added constraint: constraint((T0343)P34.CB, (T0343)Y58.CB) [> 4.5504 = 7.5840 < 9.8592] w=0.1712 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)V62.CB) [> 3.3347 = 5.5578 < 7.2251] w=0.1712 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)R59.CB) [> 3.8696 = 6.4494 < 8.3842] w=0.1712 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)I38.CB) [> 4.3167 = 7.1945 < 9.3529] w=0.1709 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)V62.CB) [> 2.9455 = 4.9092 < 6.3819] w=0.1646 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)L69.CB) [> 4.5800 = 7.6333 < 9.9233] w=0.1646 to align # Constraint # added constraint: constraint((T0343)S82.CB, (T0343)L95.CB) [> 4.0867 = 6.8112 < 8.8545] w=0.1635 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)K79.CB) [> 3.2564 = 5.4273 < 7.0555] w=0.1622 to align # Constraint # added constraint: constraint((T0343)V49.CB, (T0343)I72.CB) [> 4.2388 = 7.0646 < 9.1840] w=0.1614 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)A61.CB) [> 3.2023 = 5.3371 < 6.9383] w=0.1529 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)Y58.CB) [> 2.9905 = 4.9842 < 6.4794] w=0.1529 to align # Constraint # added constraint: constraint((T0343)K48.CB, (T0343)I72.CB) [> 4.5047 = 7.5078 < 9.7601] w=0.1520 to align # Constraint # added constraint: constraint((T0343)D26.CB, (T0343)A52.CB) [> 3.8840 = 6.4733 < 8.4153] w=0.1497 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)V78.CB) [> 4.0155 = 6.6925 < 8.7002] w=0.1497 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)V81.CB) [> 3.3466 = 5.5777 < 7.2510] w=0.1469 to align # Constraint # added constraint: constraint((T0343)D26.CB, (T0343)A37.CB) [> 3.5604 = 5.9341 < 7.7143] w=0.1469 to align # Constraint # added constraint: constraint((T0343)I72.CB, (T0343)A87.CB) [> 3.4527 = 5.7545 < 7.4808] w=0.1458 to align # Constraint # added constraint: constraint((T0343)A52.CB, (T0343)V62.CB) [> 2.6790 = 4.4650 < 5.8044] w=0.1446 to align # Constraint # added constraint: constraint((T0343)V55.CB, (T0343)A65.CB) [> 3.6965 = 6.1608 < 8.0091] w=0.1441 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)A52.CB) [> 4.2971 = 7.1619 < 9.3104] w=0.1428 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)A52.CB) [> 3.8113 = 6.3522 < 8.2579] w=0.1345 to align # Constraint # added constraint: constraint((T0343)C29.CB, (T0343)Y58.CB) [> 3.6472 = 6.0786 < 7.9022] w=0.1321 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)N77.CB) [> 4.2927 = 7.1545 < 9.3008] w=0.1281 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)K48.CB) [> 4.7040 = 7.8400 < 10.1920] w=0.1245 to align # Constraint # added constraint: constraint((T0343)F18.CB, (T0343)K79.CB) [> 4.3027 = 7.1712 < 9.3226] w=0.1239 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)A52.CB) [> 3.8846 = 6.4744 < 8.4167] w=0.1239 to align # Constraint # added constraint: constraint((T0343)C27.CB, (T0343)A52.CB) [> 3.7717 = 6.2861 < 8.1719] w=0.1239 to align # Constraint # added constraint: constraint((T0343)P28.CB, (T0343)E51.CB) [> 4.0227 = 6.7044 < 8.7158] w=0.1239 to align # Constraint # added constraint: constraint((T0343)P28.CB, (T0343)A52.CB) [> 3.6276 = 6.0460 < 7.8598] w=0.1239 to align # Constraint # added constraint: constraint((T0343)P34.CB, (T0343)W64.CB) [> 3.4056 = 5.6760 < 7.3787] w=0.1239 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)V62.CB) [> 4.5491 = 7.5818 < 9.8563] w=0.1210 to align # Constraint # added constraint: constraint((T0343)I72.CB, (T0343)A98.CB) [> 4.3852 = 7.3087 < 9.5013] w=0.1181 to align # Constraint # added constraint: constraint((T0343)G16.CA, (T0343)I72.CB) [> 4.7434 = 7.9057 < 10.2774] w=0.1163 to align # Constraint # added constraint: constraint((T0343)L80.CB, (T0343)L99.CB) [> 4.2502 = 7.0837 < 9.2088] w=0.1153 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)K90.CB) [> 3.7666 = 6.2778 < 8.1611] w=0.1145 to align # Constraint # added constraint: constraint((T0343)E30.CB, (T0343)Y58.CB) [> 4.4861 = 7.4769 < 9.7200] w=0.1133 to align # Constraint # added constraint: constraint((T0343)F12.CB, (T0343)E21.CB) [> 3.0768 = 5.1280 < 6.6664] w=0.1077 to align # Constraint # added constraint: constraint((T0343)I66.CB, (T0343)L99.CB) [> 3.3758 = 5.6263 < 7.3142] w=0.1074 to align # Constraint # added constraint: constraint((T0343)G11.CA, (T0343)V20.CB) [> 3.6897 = 6.1495 < 7.9943] w=0.1053 to align # Constraint # added constraint: constraint((T0343)T35.CB, (T0343)V55.CB) [> 4.2544 = 7.0907 < 9.2179] w=0.1020 to align # Constraint # added constraint: constraint((T0343)G11.CA, (T0343)E21.CB) [> 4.4087 = 7.3479 < 9.5523] w=0.0997 to align # Constraint # added constraint: constraint((T0343)V55.CB, (T0343)S82.CB) [> 4.3049 = 7.1748 < 9.3272] w=0.0995 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)Y39.CB) [> 4.1689 = 6.9482 < 9.0326] w=0.0972 to align # Constraint # added constraint: constraint((T0343)I32.CB, (T0343)A52.CB) [> 3.4718 = 5.7863 < 7.5222] w=0.0972 to align # Constraint # added constraint: constraint((T0343)C27.CB, (T0343)A61.CB) [> 2.6768 = 4.4613 < 5.7996] w=0.0957 to align # Constraint # added constraint: constraint((T0343)C27.CB, (T0343)Y58.CB) [> 2.8501 = 4.7501 < 6.1751] w=0.0957 to align # Constraint # added constraint: constraint((T0343)I25.CB, (T0343)V62.CB) [> 4.3957 = 7.3262 < 9.5240] w=0.0957 to align # Constraint # added constraint: constraint((T0343)D26.CB, (T0343)D84.CB) [> 4.0761 = 6.7936 < 8.8317] w=0.0951 to align # Constraint # added constraint: constraint((T0343)E21.CB, (T0343)V81.CB) [> 4.3383 = 7.2306 < 9.3998] w=0.0951 to align # Constraint # added constraint: constraint((T0343)E67.CB, (T0343)L83.CB) [> 3.4648 = 5.7747 < 7.5071] w=0.0938 to align # Constraint # added constraint: constraint((T0343)P28.CB, (T0343)Y58.CB) [> 4.4634 = 7.4390 < 9.6707] w=0.0885 to align # Constraint # added constraint: constraint((T0343)I32.CB, (T0343)G85.CA) [> 3.6771 = 6.1285 < 7.9671] w=0.0833 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)S82.CB) [> 2.9969 = 4.9948 < 6.4932] w=0.0826 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)S82.CB) [> 3.9669 = 6.6115 < 8.5950] w=0.0826 to align # Constraint # added constraint: constraint((T0343)E10.CB, (T0343)R94.CB) [> 2.7101 = 4.5168 < 5.8718] w=0.0797 to align # Constraint # added constraint: constraint((T0343)L7.CB, (T0343)A98.CB) [> 3.3944 = 5.6573 < 7.3545] w=0.0797 to align # Constraint # added constraint: constraint((T0343)L7.CB, (T0343)L95.CB) [> 3.9200 = 6.5334 < 8.4934] w=0.0797 to align # Constraint # added constraint: constraint((T0343)L7.CB, (T0343)V91.CB) [> 4.5056 = 7.5094 < 9.7622] w=0.0797 to align # Constraint # added constraint: constraint((T0343)I6.CB, (T0343)A98.CB) [> 2.3460 = 3.9100 < 5.0830] w=0.0797 to align # Constraint # added constraint: constraint((T0343)F12.CB, (T0343)K90.CB) [> 3.6347 = 6.0579 < 7.8752] w=0.0797 to align # Constraint # added constraint: constraint((T0343)F12.CB, (T0343)V91.CB) [> 2.4517 = 4.0862 < 5.3121] w=0.0797 to align # Constraint # added constraint: constraint((T0343)F12.CB, (T0343)L95.CB) [> 4.6629 = 7.7714 < 10.1029] w=0.0797 to align # Constraint # added constraint: constraint((T0343)L13.CB, (T0343)R71.CB) [> 4.5896 = 7.6494 < 9.9442] w=0.0797 to align # Constraint # added constraint: constraint((T0343)L13.CB, (T0343)V91.CB) [> 4.6484 = 7.7473 < 10.0715] w=0.0797 to align # Constraint # added constraint: constraint((T0343)P28.CB, (T0343)N57.CB) [> 3.2143 = 5.3573 < 6.9644] w=0.0774 to align # Constraint # added constraint: constraint((T0343)C27.CB, (T0343)N57.CB) [> 3.5466 = 5.9111 < 7.6844] w=0.0774 to align # Constraint # added constraint: constraint((T0343)I6.CB, (T0343)L15.CB) [> 3.4089 = 5.6815 < 7.3860] w=0.0774 to align # Constraint # added constraint: constraint((T0343)W3.CB, (T0343)L15.CB) [> 3.9783 = 6.6305 < 8.6196] w=0.0774 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)I72.CB) [> 3.3991 = 5.6652 < 7.3647] w=0.0765 to align # Constraint # added constraint: constraint((T0343)R4.CB, (T0343)V20.CB) [> 4.2867 = 7.1446 < 9.2880] w=0.0740 to align # Constraint # added constraint: constraint((T0343)E21.CB, (T0343)W64.CB) [> 3.6520 = 6.0866 < 7.9126] w=0.0740 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)V62.CB) [> 4.7307 = 7.8845 < 10.2498] w=0.0704 to align # Constraint # added constraint: constraint((T0343)V62.CB, (T0343)L99.CB) [> 2.8369 = 4.7282 < 6.1467] w=0.0661 to align # Constraint # added constraint: constraint((T0343)I66.CB, (T0343)S96.CB) [> 3.3741 = 5.6235 < 7.3106] w=0.0661 to align # Constraint # added constraint: constraint((T0343)C27.CB, (T0343)L36.CB) [> 3.9088 = 6.5147 < 8.4691] w=0.0636 to align # Constraint # added constraint: constraint((T0343)G75.CA, (T0343)M92.CB) [> 4.1628 = 6.9379 < 9.0193] w=0.0617 to align # Constraint # added constraint: constraint((T0343)L13.CB, (T0343)V49.CB) [> 4.4354 = 7.3923 < 9.6100] w=0.0601 to align # Constraint # added constraint: constraint((T0343)I72.CB, (T0343)L83.CB) [> 2.8272 = 4.7120 < 6.1256] w=0.0587 to align # Constraint # added constraint: constraint((T0343)C29.CB, (T0343)A52.CB) [> 3.7232 = 6.2054 < 8.0670] w=0.0547 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)V81.CB) [> 3.7825 = 6.3042 < 8.1954] w=0.0541 to align # Constraint # added constraint: constraint((T0343)F18.CB, (T0343)V68.CB) [> 3.7958 = 6.3263 < 8.2241] w=0.0518 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)L83.CB) [> 4.7185 = 7.8642 < 10.2234] w=0.0518 to align # Constraint # added constraint: constraint((T0343)Y39.CB, (T0343)L83.CB) [> 3.9341 = 6.5569 < 8.5240] w=0.0518 to align # Constraint # added constraint: constraint((T0343)P31.CB, (T0343)A52.CB) [> 4.0493 = 6.7488 < 8.7734] w=0.0501 to align # Constraint # added constraint: constraint((T0343)L7.CB, (T0343)V68.CB) [> 3.2394 = 5.3991 < 7.0188] w=0.0491 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)A52.CB) [> 3.3926 = 5.6543 < 7.3506] w=0.0458 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)L83.CB) [> 3.4919 = 5.8198 < 7.5658] w=0.0455 to align # Constraint # added constraint: constraint((T0343)Y24.CB, (T0343)A52.CB) [> 3.9863 = 6.6438 < 8.6370] w=0.0455 to align # Constraint # added constraint: constraint((T0343)C27.CB, (T0343)K48.CB) [> 3.4383 = 5.7304 < 7.4496] w=0.0418 to align # Constraint # added constraint: constraint((T0343)I32.CB, (T0343)Y58.CB) [> 3.3104 = 5.5174 < 7.1726] w=0.0418 to align # Constraint # added constraint: constraint((T0343)C27.CB, (T0343)V81.CB) [> 3.6445 = 6.0741 < 7.8963] w=0.0416 to align # Constraint # added constraint: constraint((T0343)P28.CB, (T0343)V81.CB) [> 3.2376 = 5.3961 < 7.0149] w=0.0416 to align # Constraint # added constraint: constraint((T0343)C29.CB, (T0343)V91.CB) [> 3.0589 = 5.0982 < 6.6277] w=0.0416 to align # Constraint # added constraint: constraint((T0343)C29.CB, (T0343)M92.CB) [> 4.5998 = 7.6663 < 9.9661] w=0.0416 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)M92.CB) [> 3.8485 = 6.4141 < 8.3383] w=0.0416 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)I32.CB) [> 2.4792 = 4.1320 < 5.3716] w=0.0416 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)N77.CB) [> 4.3686 = 7.2811 < 9.4654] w=0.0416 to align # Constraint # added constraint: constraint((T0343)G43.CA, (T0343)S96.CB) [> 4.3481 = 7.2468 < 9.4208] w=0.0416 to align # Constraint # added constraint: constraint((T0343)E30.CB, (T0343)P89.CB) [> 4.1427 = 6.9045 < 8.9759] w=0.0416 to align # Constraint # added constraint: constraint((T0343)W3.CB, (T0343)V68.CB) [> 3.5750 = 5.9583 < 7.7458] w=0.0388 to align # Constraint # added constraint: constraint((T0343)W3.CB, (T0343)R71.CB) [> 4.7960 = 7.9933 < 10.3913] w=0.0388 to align # Constraint # added constraint: constraint((T0343)W3.CB, (T0343)I72.CB) [> 3.6460 = 6.0767 < 7.8998] w=0.0388 to align # Constraint # added constraint: constraint((T0343)Y58.CB, (T0343)I72.CB) [> 3.6514 = 6.0856 < 7.9113] w=0.0383 to align # Constraint # added constraint: constraint((T0343)Y58.CB, (T0343)M92.CB) [> 2.3702 = 3.9503 < 5.1354] w=0.0383 to align # Constraint # added constraint: constraint((T0343)I32.CB, (T0343)I72.CB) [> 4.4296 = 7.3826 < 9.5974] w=0.0259 to align # Constraint # added constraint: constraint((T0343)F18.CB, (T0343)V81.CB) [> 4.3558 = 7.2597 < 9.4377] w=0.0258 to align # Constraint # added constraint: constraint((T0343)V68.CB, (T0343)L102.CB) [> 4.6815 = 7.8024 < 10.1432] w=0.0247 to align # Constraint # added constraint: constraint((T0343)E70.CB, (T0343)L102.CB) [> 2.9952 = 4.9920 < 6.4896] w=0.0247 to align # Constraint # added constraint: constraint((T0343)E76.CB, (T0343)L102.CB) [> 4.6628 = 7.7714 < 10.1028] w=0.0247 to align # Constraint # added constraint: constraint((T0343)L80.CB, (T0343)L102.CB) [> 4.7762 = 7.9603 < 10.3484] w=0.0247 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)Y58.CB) [> 2.7693 = 4.6155 < 6.0001] w=0.0235 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)Y58.CB) [> 4.0157 = 6.6928 < 8.7006] w=0.0221 to align # Constraint # added constraint: constraint((T0343)I19.CB, (T0343)T35.CB) [> 3.2793 = 5.4655 < 7.1052] w=0.0192 to align # Constraint # added constraint: constraint((T0343)L36.CB, (T0343)Y58.CB) [> 3.6047 = 6.0078 < 7.8101] w=0.0189 to align # Constraint # added constraint: constraint((T0343)V23.CB, (T0343)L83.CB) [> 3.9187 = 6.5312 < 8.4906] w=0.0125 to align # Constraint # added constraint: constraint((T0343)L22.CB, (T0343)K48.CB) [> 3.6074 = 6.0124 < 7.8161] w=0.0117 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0343/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0343/decoys/ # ReadConformPDB reading from PDB file ../dimer/decoys/ps-1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//ps-1 # ReadConformPDB reading from PDB file ../dimer/decoys/ps-2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//ps-2 # ReadConformPDB reading from PDB file ../dimer/decoys/ps-3.pdb.gz looking for chain 'A' model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation dimer//ps-3 # ReadConformPDB reading from PDB file ../dimer/decoys/zpzw.pdb.gz looking for chain 'A' model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation dimer//zpzw # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 52 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 52 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 14 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 44 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 Skipped atom 117, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL5.pdb.gz # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 33 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 28 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 15 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 15 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 32 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 31 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0343)Y24.CA and (T0343)C27.CA only 0.000 apart, marking (T0343)C27.CA as missing WARNING: atoms too close: (T0343)I25.CA and (T0343)P28.CA only 0.000 apart, marking (T0343)P28.CA as missing WARNING: atoms too close: (T0343)D26.CA and (T0343)C29.CA only 0.000 apart, marking (T0343)C29.CA as missing WARNING: atoms too close: (T0343)E60.CA and (T0343)W64.CA only 0.000 apart, marking (T0343)W64.CA as missing WARNING: atoms too close: (T0343)A61.CA and (T0343)A65.CA only 0.000 apart, marking (T0343)A65.CA as missing WARNING: atoms too close: (T0343)V62.CA and (T0343)I66.CA only 0.000 apart, marking (T0343)I66.CA as missing # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 38 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 6 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0343 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 0.7079 model score 0.7079 model score 0.7079 model score 1.2685 model score 1.8626 model score 2.1060 model score 2.0982 model score 2.1088 model score 1.8580 model score 1.5428 model score 1.5556 model score 1.6183 model score 1.6197 model score 1.6254 model score 1.6965 model score 1.9690 model score 1.5629 model score 1.5743 model score 1.5925 model score 1.5925 model score 1.4874 model score 1.4687 model score 0.8289 model score 0.8289 model score 0.6737 model score 0.7584 model score 0.5902 model score 1.4123 model score 1.8735 model score 0.9618 model score 1.9988 model score 1.1418 model score 1.1471 model score 1.3284 model score 2.2250 model score 2.2481 model score 1.7365 model score 1.8219 model score 1.7593 model score 1.9706 model score 1.2930 model score 2.2812 model score 1.3512 model score 1.4875 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.2250 model score 1.7382 model score 1.4048 model score 2.1921 model score 1.8104 model score 1.4134 model score 2.2481 model score 2.0818 model score 2.2279 model score 1.7365 model score 1.5925 model score 1.3752 model score 1.4874 model score 1.8253 model score 1.5925 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.0992 model score 2.1569 model score 2.3753 model score 1.8300 model score 2.2761 model score 1.2819 model score 1.6080 model score 0.8927 model score 1.9962 model score 1.5338 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.2279 model score 2.1248 model score 2.0818 model score 1.1794 model score 1.3927 model score 1.9400 model score 1.0513 model score 1.5388 model score 1.1220 model score 2.1557 model score 1.2056 model score 1.5294 model score 1.4165 model score 1.1034 model score 1.1034 model score 1.6844 model score 1.2249 model score 1.4012 model score 1.5233 model score 1.2994 model score 1.4799 model score 0.5194 model score 0.5788 model score 1.4710 model score 0.6539 model score 1.7093 model score 1.2771 model score 1.3859 model score 1.8742 model score 1.7158 model score 2.1546 model score 1.3318 model score 1.4252 model score 1.8641 model score 1.1759 model score 2.0586 model score 1.3855 model score 0.7649 model score 0.5477 model score 0.6941 model score 0.5502 model score 0.7256 model score 1.8870 model score 1.8786 model score 2.2491 model score 1.3486 model score 1.9942 model score 1.8250 model score 1.0685 model score 1.0697 model score 1.0645 model score 1.0677 model score 1.0638 model score 1.1644 model score 1.1449 model score 1.0677 model score 1.9555 model score 1.0774 model score 1.0871 model score 1.1230 model score 1.0606 model score 1.0842 model score 1.1460 model score 1.2835 model score 1.5441 model score 1.6496 model score 1.7259 model score 2.4634 model score 2.5299 model score 1.3378 model score 1.1409 model score 1.1230 model score 1.1445 model score 1.1373 model score 1.1414 model score 2.0320 model score 0.9845 model score 1.7547 model score 1.8490 model score 0.9762 model score 1.3975 model score 1.2894 model score 0.8568 model score 0.5589 model score 0.9524 model score 1.3604 model score 1.2713 model score 0.8131 model score 0.5059 model score 1.1445 model score 0.9518 model score 1.1460 model score 1.1038 model score 1.1373 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.7636 model score 0.3098 model score 0.4273 model score 0.0846 model score 0.1418 model score 1.3536 model score 1.5146 model score 1.6015 model score 1.4119 model score 1.5347 model score 1.8981 model score 1.1612 model score 1.5670 model score 1.4903 model score 1.2012 model score 1.8870 model score 1.2546 model score 2.4557 model score 1.7215 model score 1.8335 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 2.1272 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.5896 model score 0.4647 model score 0.9357 model score 0.5563 model score 0.7280 model score 1.4958 model score 1.5501 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.6087 model score 1.5220 model score 1.3947 model score 0.7561 model score 1.0016 model score 1.4755 model score 1.5828 model score 1.5086 model score 1.0714 model score 1.0597 model score 1.1783 model score 1.1869 model score 1.1692 model score 2.0958 model score 1.4654 model score 1.4902 model score 1.9756 model score 1.6149 model score 1.5374 model score 1.5823 model score 1.2292 model score 1.4936 USE_META, weight: 0.7706 cost: 0.7079 min: 0.0846 max: 2.5299 USE_META, weight: 0.7706 cost: 0.7079 min: 0.0846 max: 2.5299 USE_META, weight: 0.7706 cost: 0.7079 min: 0.0846 max: 2.5299 USE_META, weight: 0.5643 cost: 1.2685 min: 0.0846 max: 2.5299 USE_META, weight: 0.3456 cost: 1.8626 min: 0.0846 max: 2.5299 USE_META, weight: 0.2560 cost: 2.1060 min: 0.0846 max: 2.5299 USE_META, weight: 0.2589 cost: 2.0982 min: 0.0846 max: 2.5299 USE_META, weight: 0.2550 cost: 2.1088 min: 0.0846 max: 2.5299 USE_META, weight: 0.3473 cost: 1.8580 min: 0.0846 max: 2.5299 USE_META, weight: 0.4633 cost: 1.5428 min: 0.0846 max: 2.5299 USE_META, weight: 0.4586 cost: 1.5556 min: 0.0846 max: 2.5299 USE_META, weight: 0.4355 cost: 1.6183 min: 0.0846 max: 2.5299 USE_META, weight: 0.4350 cost: 1.6197 min: 0.0846 max: 2.5299 USE_META, weight: 0.4329 cost: 1.6254 min: 0.0846 max: 2.5299 USE_META, weight: 0.4068 cost: 1.6965 min: 0.0846 max: 2.5299 USE_META, weight: 0.3065 cost: 1.9690 min: 0.0846 max: 2.5299 USE_META, weight: 0.4559 cost: 1.5629 min: 0.0846 max: 2.5299 USE_META, weight: 0.4517 cost: 1.5743 min: 0.0846 max: 2.5299 USE_META, weight: 0.4450 cost: 1.5925 min: 0.0846 max: 2.5299 USE_META, weight: 0.4450 cost: 1.5925 min: 0.0846 max: 2.5299 USE_META, weight: 0.4837 cost: 1.4874 min: 0.0846 max: 2.5299 USE_META, weight: 0.4906 cost: 1.4687 min: 0.0846 max: 2.5299 USE_META, weight: 0.7261 cost: 0.8289 min: 0.0846 max: 2.5299 USE_META, weight: 0.7261 cost: 0.8289 min: 0.0846 max: 2.5299 USE_META, weight: 0.7832 cost: 0.6737 min: 0.0846 max: 2.5299 USE_META, weight: 0.7520 cost: 0.7584 min: 0.0846 max: 2.5299 USE_META, weight: 0.8139 cost: 0.5902 min: 0.0846 max: 2.5299 USE_META, weight: 0.5113 cost: 1.4123 min: 0.0846 max: 2.5299 USE_META, weight: 0.3416 cost: 1.8735 min: 0.0846 max: 2.5299 USE_META, weight: 0.6772 cost: 0.9618 min: 0.0846 max: 2.5299 USE_META, weight: 0.2955 cost: 1.9988 min: 0.0846 max: 2.5299 USE_META, weight: 0.6109 cost: 1.1418 min: 0.0846 max: 2.5299 USE_META, weight: 0.6090 cost: 1.1471 min: 0.0846 max: 2.5299 USE_META, weight: 0.5422 cost: 1.3284 min: 0.0846 max: 2.5299 USE_META, weight: 0.2122 cost: 2.2250 min: 0.0846 max: 2.5299 USE_META, weight: 0.2037 cost: 2.2481 min: 0.0846 max: 2.5299 USE_META, weight: 0.3920 cost: 1.7365 min: 0.0846 max: 2.5299 USE_META, weight: 0.3606 cost: 1.8219 min: 0.0846 max: 2.5299 USE_META, weight: 0.3836 cost: 1.7593 min: 0.0846 max: 2.5299 USE_META, weight: 0.3059 cost: 1.9706 min: 0.0846 max: 2.5299 USE_META, weight: 0.5553 cost: 1.2930 min: 0.0846 max: 2.5299 USE_META, weight: 0.1916 cost: 2.2812 min: 0.0846 max: 2.5299 USE_META, weight: 0.5339 cost: 1.3512 min: 0.0846 max: 2.5299 USE_META, weight: 0.4837 cost: 1.4875 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.2122 cost: 2.2250 min: 0.0846 max: 2.5299 USE_META, weight: 0.3914 cost: 1.7382 min: 0.0846 max: 2.5299 USE_META, weight: 0.5141 cost: 1.4048 min: 0.0846 max: 2.5299 USE_META, weight: 0.2244 cost: 2.1921 min: 0.0846 max: 2.5299 USE_META, weight: 0.3648 cost: 1.8104 min: 0.0846 max: 2.5299 USE_META, weight: 0.5110 cost: 1.4134 min: 0.0846 max: 2.5299 USE_META, weight: 0.2037 cost: 2.2481 min: 0.0846 max: 2.5299 USE_META, weight: 0.2649 cost: 2.0818 min: 0.0846 max: 2.5299 USE_META, weight: 0.2112 cost: 2.2279 min: 0.0846 max: 2.5299 USE_META, weight: 0.3920 cost: 1.7365 min: 0.0846 max: 2.5299 USE_META, weight: 0.4450 cost: 1.5925 min: 0.0846 max: 2.5299 USE_META, weight: 0.5250 cost: 1.3752 min: 0.0846 max: 2.5299 USE_META, weight: 0.4837 cost: 1.4874 min: 0.0846 max: 2.5299 USE_META, weight: 0.3593 cost: 1.8253 min: 0.0846 max: 2.5299 USE_META, weight: 0.4450 cost: 1.5925 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.2585 cost: 2.0992 min: 0.0846 max: 2.5299 USE_META, weight: 0.2373 cost: 2.1569 min: 0.0846 max: 2.5299 USE_META, weight: 0.1569 cost: 2.3753 min: 0.0846 max: 2.5299 USE_META, weight: 0.3576 cost: 1.8300 min: 0.0846 max: 2.5299 USE_META, weight: 0.1934 cost: 2.2761 min: 0.0846 max: 2.5299 USE_META, weight: 0.5593 cost: 1.2819 min: 0.0846 max: 2.5299 USE_META, weight: 0.4393 cost: 1.6080 min: 0.0846 max: 2.5299 USE_META, weight: 0.7026 cost: 0.8927 min: 0.0846 max: 2.5299 USE_META, weight: 0.2964 cost: 1.9962 min: 0.0846 max: 2.5299 USE_META, weight: 0.4666 cost: 1.5338 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.2112 cost: 2.2279 min: 0.0846 max: 2.5299 USE_META, weight: 0.2491 cost: 2.1248 min: 0.0846 max: 2.5299 USE_META, weight: 0.2649 cost: 2.0818 min: 0.0846 max: 2.5299 USE_META, weight: 0.5971 cost: 1.1794 min: 0.0846 max: 2.5299 USE_META, weight: 0.5186 cost: 1.3927 min: 0.0846 max: 2.5299 USE_META, weight: 0.3171 cost: 1.9400 min: 0.0846 max: 2.5299 USE_META, weight: 0.6442 cost: 1.0513 min: 0.0846 max: 2.5299 USE_META, weight: 0.4648 cost: 1.5388 min: 0.0846 max: 2.5299 USE_META, weight: 0.6182 cost: 1.1220 min: 0.0846 max: 2.5299 USE_META, weight: 0.2378 cost: 2.1557 min: 0.0846 max: 2.5299 USE_META, weight: 0.5874 cost: 1.2056 min: 0.0846 max: 2.5299 USE_META, weight: 0.4682 cost: 1.5294 min: 0.0846 max: 2.5299 USE_META, weight: 0.5098 cost: 1.4165 min: 0.0846 max: 2.5299 USE_META, weight: 0.6250 cost: 1.1034 min: 0.0846 max: 2.5299 USE_META, weight: 0.6250 cost: 1.1034 min: 0.0846 max: 2.5299 USE_META, weight: 0.4112 cost: 1.6844 min: 0.0846 max: 2.5299 USE_META, weight: 0.5803 cost: 1.2249 min: 0.0846 max: 2.5299 USE_META, weight: 0.5154 cost: 1.4012 min: 0.0846 max: 2.5299 USE_META, weight: 0.4705 cost: 1.5233 min: 0.0846 max: 2.5299 USE_META, weight: 0.5529 cost: 1.2994 min: 0.0846 max: 2.5299 USE_META, weight: 0.4865 cost: 1.4799 min: 0.0846 max: 2.5299 USE_META, weight: 0.8400 cost: 0.5194 min: 0.0846 max: 2.5299 USE_META, weight: 0.8181 cost: 0.5788 min: 0.0846 max: 2.5299 USE_META, weight: 0.4897 cost: 1.4710 min: 0.0846 max: 2.5299 USE_META, weight: 0.7905 cost: 0.6539 min: 0.0846 max: 2.5299 USE_META, weight: 0.4020 cost: 1.7093 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5211 cost: 1.3859 min: 0.0846 max: 2.5299 USE_META, weight: 0.3413 cost: 1.8742 min: 0.0846 max: 2.5299 USE_META, weight: 0.3997 cost: 1.7158 min: 0.0846 max: 2.5299 USE_META, weight: 0.2381 cost: 2.1546 min: 0.0846 max: 2.5299 USE_META, weight: 0.5410 cost: 1.3318 min: 0.0846 max: 2.5299 USE_META, weight: 0.5066 cost: 1.4252 min: 0.0846 max: 2.5299 USE_META, weight: 0.3451 cost: 1.8641 min: 0.0846 max: 2.5299 USE_META, weight: 0.5983 cost: 1.1759 min: 0.0846 max: 2.5299 USE_META, weight: 0.2735 cost: 2.0586 min: 0.0846 max: 2.5299 USE_META, weight: 0.5212 cost: 1.3855 min: 0.0846 max: 2.5299 USE_META, weight: 0.7496 cost: 0.7649 min: 0.0846 max: 2.5299 USE_META, weight: 0.8296 cost: 0.5477 min: 0.0846 max: 2.5299 USE_META, weight: 0.7757 cost: 0.6941 min: 0.0846 max: 2.5299 USE_META, weight: 0.8286 cost: 0.5502 min: 0.0846 max: 2.5299 USE_META, weight: 0.7641 cost: 0.7256 min: 0.0846 max: 2.5299 USE_META, weight: 0.3366 cost: 1.8870 min: 0.0846 max: 2.5299 USE_META, weight: 0.3397 cost: 1.8786 min: 0.0846 max: 2.5299 USE_META, weight: 0.2034 cost: 2.2491 min: 0.0846 max: 2.5299 USE_META, weight: 0.5348 cost: 1.3486 min: 0.0846 max: 2.5299 USE_META, weight: 0.2972 cost: 1.9942 min: 0.0846 max: 2.5299 USE_META, weight: 0.3595 cost: 1.8250 min: 0.0846 max: 2.5299 USE_META, weight: 0.6379 cost: 1.0685 min: 0.0846 max: 2.5299 USE_META, weight: 0.6374 cost: 1.0697 min: 0.0846 max: 2.5299 USE_META, weight: 0.6394 cost: 1.0645 min: 0.0846 max: 2.5299 USE_META, weight: 0.6382 cost: 1.0677 min: 0.0846 max: 2.5299 USE_META, weight: 0.6396 cost: 1.0638 min: 0.0846 max: 2.5299 USE_META, weight: 0.6026 cost: 1.1644 min: 0.0846 max: 2.5299 USE_META, weight: 0.6098 cost: 1.1449 min: 0.0846 max: 2.5299 USE_META, weight: 0.6382 cost: 1.0677 min: 0.0846 max: 2.5299 USE_META, weight: 0.3114 cost: 1.9555 min: 0.0846 max: 2.5299 USE_META, weight: 0.6346 cost: 1.0774 min: 0.0846 max: 2.5299 USE_META, weight: 0.6310 cost: 1.0871 min: 0.0846 max: 2.5299 USE_META, weight: 0.6178 cost: 1.1230 min: 0.0846 max: 2.5299 USE_META, weight: 0.6408 cost: 1.0606 min: 0.0846 max: 2.5299 USE_META, weight: 0.6321 cost: 1.0842 min: 0.0846 max: 2.5299 USE_META, weight: 0.6093 cost: 1.1460 min: 0.0846 max: 2.5299 USE_META, weight: 0.5588 cost: 1.2835 min: 0.0846 max: 2.5299 USE_META, weight: 0.4628 cost: 1.5441 min: 0.0846 max: 2.5299 USE_META, weight: 0.4240 cost: 1.6496 min: 0.0846 max: 2.5299 USE_META, weight: 0.3959 cost: 1.7259 min: 0.0846 max: 2.5299 USE_META, weight: 0.1245 cost: 2.4634 min: 0.0846 max: 2.5299 USE_META, weight: 0.1000 cost: 2.5299 min: 0.0846 max: 2.5299 USE_META, weight: 0.5388 cost: 1.3378 min: 0.0846 max: 2.5299 USE_META, weight: 0.6112 cost: 1.1409 min: 0.0846 max: 2.5299 USE_META, weight: 0.6178 cost: 1.1230 min: 0.0846 max: 2.5299 USE_META, weight: 0.6099 cost: 1.1445 min: 0.0846 max: 2.5299 USE_META, weight: 0.6126 cost: 1.1373 min: 0.0846 max: 2.5299 USE_META, weight: 0.6111 cost: 1.1414 min: 0.0846 max: 2.5299 USE_META, weight: 0.2833 cost: 2.0320 min: 0.0846 max: 2.5299 USE_META, weight: 0.6688 cost: 0.9845 min: 0.0846 max: 2.5299 USE_META, weight: 0.3853 cost: 1.7547 min: 0.0846 max: 2.5299 USE_META, weight: 0.3506 cost: 1.8490 min: 0.0846 max: 2.5299 USE_META, weight: 0.6719 cost: 0.9762 min: 0.0846 max: 2.5299 USE_META, weight: 0.5168 cost: 1.3975 min: 0.0846 max: 2.5299 USE_META, weight: 0.5566 cost: 1.2894 min: 0.0846 max: 2.5299 USE_META, weight: 0.7158 cost: 0.8568 min: 0.0846 max: 2.5299 USE_META, weight: 0.8254 cost: 0.5589 min: 0.0846 max: 2.5299 USE_META, weight: 0.6806 cost: 0.9524 min: 0.0846 max: 2.5299 USE_META, weight: 0.5304 cost: 1.3604 min: 0.0846 max: 2.5299 USE_META, weight: 0.5632 cost: 1.2713 min: 0.0846 max: 2.5299 USE_META, weight: 0.7319 cost: 0.8131 min: 0.0846 max: 2.5299 USE_META, weight: 0.8449 cost: 0.5059 min: 0.0846 max: 2.5299 USE_META, weight: 0.6099 cost: 1.1445 min: 0.0846 max: 2.5299 USE_META, weight: 0.6808 cost: 0.9518 min: 0.0846 max: 2.5299 USE_META, weight: 0.6093 cost: 1.1460 min: 0.0846 max: 2.5299 USE_META, weight: 0.6249 cost: 1.1038 min: 0.0846 max: 2.5299 USE_META, weight: 0.6126 cost: 1.1373 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.7501 cost: 0.7636 min: 0.0846 max: 2.5299 USE_META, weight: 0.9171 cost: 0.3098 min: 0.0846 max: 2.5299 USE_META, weight: 0.8739 cost: 0.4273 min: 0.0846 max: 2.5299 USE_META, weight: 1.0000 cost: 0.0846 min: 0.0846 max: 2.5299 USE_META, weight: 0.9789 cost: 0.1418 min: 0.0846 max: 2.5299 USE_META, weight: 0.5330 cost: 1.3536 min: 0.0846 max: 2.5299 USE_META, weight: 0.4737 cost: 1.5146 min: 0.0846 max: 2.5299 USE_META, weight: 0.4417 cost: 1.6015 min: 0.0846 max: 2.5299 USE_META, weight: 0.5115 cost: 1.4119 min: 0.0846 max: 2.5299 USE_META, weight: 0.4663 cost: 1.5347 min: 0.0846 max: 2.5299 USE_META, weight: 0.3325 cost: 1.8981 min: 0.0846 max: 2.5299 USE_META, weight: 0.6038 cost: 1.1612 min: 0.0846 max: 2.5299 USE_META, weight: 0.4544 cost: 1.5670 min: 0.0846 max: 2.5299 USE_META, weight: 0.4827 cost: 1.4903 min: 0.0846 max: 2.5299 USE_META, weight: 0.5890 cost: 1.2012 min: 0.0846 max: 2.5299 USE_META, weight: 0.3366 cost: 1.8870 min: 0.0846 max: 2.5299 USE_META, weight: 0.5694 cost: 1.2546 min: 0.0846 max: 2.5299 USE_META, weight: 0.1273 cost: 2.4557 min: 0.0846 max: 2.5299 USE_META, weight: 0.3976 cost: 1.7215 min: 0.0846 max: 2.5299 USE_META, weight: 0.3563 cost: 1.8335 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.2482 cost: 2.1272 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.8141 cost: 0.5896 min: 0.0846 max: 2.5299 USE_META, weight: 0.8601 cost: 0.4647 min: 0.0846 max: 2.5299 USE_META, weight: 0.6867 cost: 0.9357 min: 0.0846 max: 2.5299 USE_META, weight: 0.8264 cost: 0.5563 min: 0.0846 max: 2.5299 USE_META, weight: 0.7632 cost: 0.7280 min: 0.0846 max: 2.5299 USE_META, weight: 0.4806 cost: 1.4958 min: 0.0846 max: 2.5299 USE_META, weight: 0.4606 cost: 1.5501 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.5611 cost: 1.2771 min: 0.0846 max: 2.5299 USE_META, weight: 0.4391 cost: 1.6087 min: 0.0846 max: 2.5299 USE_META, weight: 0.4710 cost: 1.5220 min: 0.0846 max: 2.5299 USE_META, weight: 0.5178 cost: 1.3947 min: 0.0846 max: 2.5299 USE_META, weight: 0.7529 cost: 0.7561 min: 0.0846 max: 2.5299 USE_META, weight: 0.6625 cost: 1.0016 min: 0.0846 max: 2.5299 USE_META, weight: 0.4881 cost: 1.4755 min: 0.0846 max: 2.5299 USE_META, weight: 0.4486 cost: 1.5828 min: 0.0846 max: 2.5299 USE_META, weight: 0.4759 cost: 1.5086 min: 0.0846 max: 2.5299 USE_META, weight: 0.6368 cost: 1.0714 min: 0.0846 max: 2.5299 USE_META, weight: 0.6411 cost: 1.0597 min: 0.0846 max: 2.5299 USE_META, weight: 0.5975 cost: 1.1783 min: 0.0846 max: 2.5299 USE_META, weight: 0.5943 cost: 1.1869 min: 0.0846 max: 2.5299 USE_META, weight: 0.6008 cost: 1.1692 min: 0.0846 max: 2.5299 USE_META, weight: 0.2598 cost: 2.0958 min: 0.0846 max: 2.5299 USE_META, weight: 0.4918 cost: 1.4654 min: 0.0846 max: 2.5299 USE_META, weight: 0.4827 cost: 1.4902 min: 0.0846 max: 2.5299 USE_META, weight: 0.3040 cost: 1.9756 min: 0.0846 max: 2.5299 USE_META, weight: 0.4368 cost: 1.6149 min: 0.0846 max: 2.5299 USE_META, weight: 0.4653 cost: 1.5374 min: 0.0846 max: 2.5299 USE_META, weight: 0.4488 cost: 1.5823 min: 0.0846 max: 2.5299 USE_META, weight: 0.5787 cost: 1.2292 min: 0.0846 max: 2.5299 USE_META, weight: 0.4814 cost: 1.4936 min: 0.0846 max: 2.5299 USE_EVALUE, weight: 0.9571 eval: 6.8600 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.9571 eval: 6.8600 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.9571 eval: 6.8600 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.2657 eval: 22.3680 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.2657 eval: 22.3680 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.2657 eval: 22.3680 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.2301 eval: 23.1670 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.2301 eval: 23.1670 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.2301 eval: 23.1670 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.3346 eval: 20.8240 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.3346 eval: 20.8240 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.3346 eval: 20.8240 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.6225 eval: 14.3650 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.6225 eval: 14.3650 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.6225 eval: 14.3650 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.9917 eval: 6.0841 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.9917 eval: 6.0841 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.9917 eval: 6.0841 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.3379 eval: 20.7500 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.3379 eval: 20.7500 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.1000 eval: 26.0860 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.1000 eval: 26.0860 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.1000 eval: 26.0860 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.7511 eval: 11.4810 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.7511 eval: 11.4810 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.7511 eval: 11.4810 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.2816 eval: 22.0120 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.2816 eval: 22.0120 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.2816 eval: 22.0120 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.4394 eval: 18.4720 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.4394 eval: 18.4720 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.4394 eval: 18.4720 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.5924 eval: 15.0400 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.5924 eval: 15.0400 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.5924 eval: 15.0400 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 1.0000 eval: 5.8974 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 1.0000 eval: 5.8974 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 1.0000 eval: 5.8974 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.6198 eval: 14.4250 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.6198 eval: 14.4250 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.6198 eval: 14.4250 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.1512 eval: 24.9370 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.1512 eval: 24.9370 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.1512 eval: 24.9370 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.3267 eval: 21.0000 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.3267 eval: 21.0000 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.3267 eval: 21.0000 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.9187 eval: 7.7200 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.9187 eval: 7.7200 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.9187 eval: 7.7200 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.8624 eval: 8.9839 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.8624 eval: 8.9839 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.8624 eval: 8.9839 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.5410 eval: 16.1940 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.5410 eval: 16.1940 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.5410 eval: 16.1940 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.5294 eval: 16.4540 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.5294 eval: 16.4540 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.5294 eval: 16.4540 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.5242 eval: 16.5710 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.5242 eval: 16.5710 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.5242 eval: 16.5710 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.4864 eval: 17.4180 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.4864 eval: 17.4180 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.4864 eval: 17.4180 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.9313 eval: 7.4382 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.9313 eval: 7.4382 min: 5.8974 max: 26.0860 USE_EVALUE, weight: 0.9313 eval: 7.4382 min: 5.8974 max: 26.0860 Number of contacts in models: 256 Number of contacts in alignments: 68 NUMB_ALIGNS: 68 Adding 4126 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -176.7350, CN propb: -176.7350 weights: 0.2850 constraints: 236 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 236 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 236 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 3890 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 3890 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 4126 # command: