# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/
# command:# reading dunbrack-2191.atoms
#
#computed average backbone with maximum peptide_sq_deviance = 0.002
# computed average trans backbone unit from 53157 examples
# computed average trans backbone unit before proline from 2010 examples
# computed average cis backbone unit from 97 examples
# trans (non-proline) backbone unit:
#	  CA= -2.2087 1.0126 -0.0030
#	   O= -0.1499 2.2440 0.0016
#	   C= -0.6889 1.1368 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4581 -0.0000 0.0000
# cis backbone unit:
#	  CA= -0.1436 2.4534 -0.0002
#	   O= -2.0284 0.9742 0.0015
#	   C= -0.8018 1.0771 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4668 0.0000 0.0000
# trans backbone unit before proline:
#	  CA= -2.2100 1.0631 -0.0014
#	   O= -0.1236 2.2458 0.0075
#	   C= -0.6872 1.1517 -0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4660 0.0000 0.0000


# After reading dunbrack-2191.atoms have 2191 chains in training database
#  Count of chains,residues,atoms: 2191,500310,3902258
#  493341 residues have no bad marker
#  3226 residues lack atoms needed to compute omega
#  1453 residues have cis peptide
#  number of each bad type:
#	NON_STANDARD_RESIDUE	4
#	HAS_OXT	1167
#	TOO_MANY_ATOMS	1
#	TOO_FEW_ATOMS	3052
#	HAS_UNKNOWN_ATOMS	9
#	HAS_DUPLICATE_ATOMS	0
#	CHAIN_BREAK_BEFORE	979
#	NON_PLANAR_PEPTIDE	888
#	BAD_PEPTIDE	2680
#  Note: may sum to more than number of residues, 
#    because one residue may have multiple problems
# command:# Reading rotamer library from dunbrack-2191.rot
# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/
# command:# ReadAtomType exp-pdb.types
Read AtomType exp-pdb with 49 types.
# command:# ReadClashTable exp-pdb-2191-2symm.clash
# Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2
# command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0338/
# command:# Making conformation for sequence T0338 numbered 1 through 256
Created new target T0338 from T0338.a2m
# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0338/
# command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0338//projects/compbio/experiments/protein-predict/casp7/T0338/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0338//projects/compbio/experiments/protein-predict/casp7/T0338/align.constraints_v3.costfcn.gz for input
Trying /projects/compbio/experiments/protein-predict/casp7/T0338/align.constraints_v3.costfcn
# reading script from file /projects/compbio/experiments/protein-predict/casp7/T0338/align.constraints_v3.costfcn
# future Constraint commands -> align
# future HelixConstraint commands -> align
# future StrandConstraint commands -> align
# future SheetConstraint commands -> align
# future Hbond commands -> align
# future SSbond commands -> align
# Constraint # added constraint: constraint((T0338)M59.CB, (T0338)I76.CB) [> 3.8217 = 6.3695 < 8.2803] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)Y58.CB, (T0338)L137.CB) [> 4.0113 = 6.6854 < 8.6911] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)Y58.CB, (T0338)M133.CB) [> 3.9873 = 6.6455 < 8.6391] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)Y58.CB, (T0338)A84.CB) [> 3.7737 = 6.2895 < 8.1764] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)Y58.CB, (T0338)A80.CB) [> 2.5013 = 4.1688 < 5.4194] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)A55.CB, (T0338)A84.CB) [> 2.4244 = 4.0406 < 5.2528] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)A55.CB, (T0338)L81.CB) [> 2.7422 = 4.5703 < 5.9414] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)A55.CB, (T0338)A80.CB) [> 2.6847 = 4.4746 < 5.8169] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)T54.CB, (T0338)A84.CB) [> 2.4189 = 4.0315 < 5.2410] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)T51.CB, (T0338)A85.CB) [> 3.2303 = 5.3838 < 6.9989] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)T51.CB, (T0338)A84.CB) [> 2.8117 = 4.6862 < 6.0921] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)T51.CB, (T0338)L81.CB) [> 4.3511 = 7.2518 < 9.4273] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)V47.CB, (T0338)A85.CB) [> 4.1004 = 6.8340 < 8.8842] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)G42.CA, (T0338)L81.CB) [> 4.2983 = 7.1638 < 9.3130] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)M41.CB, (T0338)L81.CB) [> 3.6761 = 6.1268 < 7.9649] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)I38.CB, (T0338)L81.CB) [> 3.6789 = 6.1315 < 7.9710] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)I38.CB, (T0338)S77.CB) [> 3.1721 = 5.2869 < 6.8729] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)I38.CB, (T0338)I56.CB) [> 4.0138 = 6.6896 < 8.6965] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)I38.CB, (T0338)A55.CB) [> 3.4623 = 5.7704 < 7.5016] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)L37.CB, (T0338)S77.CB) [> 3.9111 = 6.5185 < 8.4741] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)L37.CB, (T0338)N74.CB) [> 4.2054 = 7.0091 < 9.1118] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)S174.CB, (T0338)I189.CB) [> 3.6028 = 6.0047 < 7.8060] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)M170.CB, (T0338)C193.CB) [> 2.6662 = 4.4436 < 5.7767] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)L83.CB, (T0338)L134.CB) [> 4.0681 = 6.7802 < 8.8142] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)L83.CB, (T0338)M133.CB) [> 3.7696 = 6.2827 < 8.1675] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)F82.CB, (T0338)E130.CB) [> 3.6496 = 6.0826 < 7.9074] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)A80.CB, (T0338)M133.CB) [> 3.9072 = 6.5119 < 8.4655] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)T79.CB, (T0338)M133.CB) [> 3.1685 = 5.2807 < 6.8650] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)T79.CB, (T0338)E130.CB) [> 2.8537 = 4.7562 < 6.1830] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)T79.CB, (T0338)L129.CB) [> 2.4902 = 4.1504 < 5.3955] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)T79.CB, (T0338)L126.CB) [> 3.2884 = 5.4806 < 7.1248] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)I76.CB, (T0338)M133.CB) [> 4.1417 = 6.9029 < 8.9738] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)I76.CB, (T0338)L129.CB) [> 3.6452 = 6.0753 < 7.8979] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)I75.CB, (T0338)L129.CB) [> 3.1470 = 5.2450 < 6.8185] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)I75.CB, (T0338)L126.CB) [> 3.9976 = 6.6627 < 8.6615] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)I75.CB, (T0338)E125.CB) [> 3.3510 = 5.5851 < 7.2606] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)H65.CB, (T0338)T136.CB) [> 3.5473 = 5.9123 < 7.6859] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)F62.CB, (T0338)T136.CB) [> 3.4860 = 5.8099 < 7.5529] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)F62.CB, (T0338)M133.CB) [> 3.3103 = 5.5172 < 7.1723] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)F62.CB, (T0338)A80.CB) [> 4.1584 = 6.9307 < 9.0099] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)F62.CB, (T0338)I76.CB) [> 3.6553 = 6.0922 < 7.9198] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)M59.CB, (T0338)A80.CB) [> 2.7543 = 4.5904 < 5.9676] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)M59.CB, (T0338)S77.CB) [> 3.4258 = 5.7097 < 7.4226] w=1.0000 to align
# Constraint # added constraint: constraint((T0338)M170.CB, (T0338)L196.CB) [> 3.5753 = 5.9588 < 7.7465] w=0.9732 to align
# Constraint # added constraint: constraint((T0338)A171.CB, (T0338)I189.CB) [> 3.7703 = 6.2838 < 8.1689] w=0.9732 to align
# Constraint # added constraint: constraint((T0338)A171.CB, (T0338)A190.CB) [> 3.8827 = 6.4712 < 8.4126] w=0.9732 to align
# Constraint # added constraint: constraint((T0338)A171.CB, (T0338)C193.CB) [> 2.6773 = 4.4621 < 5.8007] w=0.9732 to align
# Constraint # added constraint: constraint((T0338)S174.CB, (T0338)C193.CB) [> 4.1466 = 6.9110 < 8.9844] w=0.9732 to align
# Constraint # added constraint: constraint((T0338)A34.CB, (T0338)M59.CB) [> 4.1310 = 6.8850 < 8.9505] w=0.9732 to align
# Constraint # added constraint: constraint((T0338)A34.CB, (T0338)K73.CB) [> 3.0633 = 5.1055 < 6.6371] w=0.9732 to align
# Constraint # added constraint: constraint((T0338)A34.CB, (T0338)S77.CB) [> 2.9638 = 4.9397 < 6.4216] w=0.9732 to align
# Constraint # added constraint: constraint((T0338)A35.CB, (T0338)I56.CB) [> 3.4941 = 5.8236 < 7.5706] w=0.9732 to align
# Constraint # added constraint: constraint((T0338)A35.CB, (T0338)M59.CB) [> 4.3919 = 7.3198 < 9.5157] w=0.9651 to align
# Constraint # added constraint: constraint((T0338)D149.CB, (T0338)T187.CB) [> 3.1286 = 5.2143 < 6.7785] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)D149.CB, (T0338)P186.CB) [> 3.6806 = 6.1344 < 7.9747] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)P146.CB, (T0338)A190.CB) [> 2.7805 = 4.6342 < 6.0245] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)P146.CB, (T0338)I189.CB) [> 2.9170 = 4.8616 < 6.3201] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)P146.CB, (T0338)P186.CB) [> 2.8792 = 4.7987 < 6.2383] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)L83.CB, (T0338)E130.CB) [> 3.6777 = 6.1295 < 7.9683] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)F82.CB, (T0338)L126.CB) [> 3.7545 = 6.2574 < 8.1347] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)F62.CB, (T0338)L137.CB) [> 4.0570 = 6.7617 < 8.7903] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)R61.CB, (T0338)L137.CB) [> 3.6332 = 6.0553 < 7.8719] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)A55.CB, (T0338)L83.CB) [> 4.5530 = 7.5883 < 9.8648] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)T54.CB, (T0338)E88.CB) [> 3.5747 = 5.9578 < 7.7451] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)T54.CB, (T0338)V87.CB) [> 3.8884 = 6.4807 < 8.4249] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)I52.CB, (T0338)A84.CB) [> 4.5375 = 7.5625 < 9.8313] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)T51.CB, (T0338)E88.CB) [> 2.9059 = 4.8432 < 6.2962] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)L50.CB, (T0338)E88.CB) [> 3.1815 = 5.3026 < 6.8933] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)L196.CB, (T0338)T231.CB) [> 3.8100 = 6.3500 < 8.2550] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)H195.CB, (T0338)T231.CB) [> 3.5540 = 5.9233 < 7.7003] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)V192.CB, (T0338)F234.CB) [> 2.9811 = 4.9685 < 6.4591] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)V192.CB, (T0338)T231.CB) [> 2.6217 = 4.3696 < 5.6804] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)V192.CB, (T0338)L230.CB) [> 2.6810 = 4.4683 < 5.8088] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)I189.CB, (T0338)F234.CB) [> 4.2938 = 7.1563 < 9.3032] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)V188.CB, (T0338)L230.CB) [> 3.0111 = 5.0186 < 6.5241] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)Y184.CB, (T0338)L230.CB) [> 3.3302 = 5.5504 < 7.2154] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)C153.CB, (T0338)I194.CB) [> 3.2622 = 5.4371 < 7.0682] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)C153.CB, (T0338)C191.CB) [> 4.0343 = 6.7239 < 8.7410] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)C153.CB, (T0338)A190.CB) [> 3.7114 = 6.1857 < 8.0414] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)V150.CB, (T0338)I194.CB) [> 3.9817 = 6.6362 < 8.6271] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)V150.CB, (T0338)A190.CB) [> 3.0652 = 5.1086 < 6.6412] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)V150.CB, (T0338)S167.CB) [> 3.4711 = 5.7852 < 7.5207] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)D149.CB, (T0338)A190.CB) [> 2.4275 = 4.0458 < 5.2596] w=0.9630 to align
# Constraint # added constraint: constraint((T0338)H145.CB, (T0338)P186.CB) [> 3.6649 = 6.1081 < 7.9405] w=0.9550 to align
# Constraint # added constraint: constraint((T0338)P146.CB, (T0338)A171.CB) [> 2.8454 = 4.7423 < 6.1649] w=0.9362 to align
# Constraint # added constraint: constraint((T0338)E144.CB, (T0338)P186.CB) [> 3.2163 = 5.3605 < 6.9687] w=0.9281 to align
# Constraint # added constraint: constraint((T0338)I56.CB, (T0338)A80.CB) [> 4.5969 = 7.6615 < 9.9600] w=0.9220 to align
# Constraint # added constraint: constraint((T0338)I38.CB, (T0338)I52.CB) [> 3.8370 = 6.3951 < 8.3136] w=0.9194 to align
# Constraint # added constraint: constraint((T0338)Q39.CB, (T0338)I52.CB) [> 3.7020 = 6.1699 < 8.0209] w=0.9194 to align
# Constraint # added constraint: constraint((T0338)M170.CB, (T0338)A197.CB) [> 3.6328 = 6.0547 < 7.8711] w=0.9194 to align
# Constraint # added constraint: constraint((T0338)S167.CB, (T0338)A197.CB) [> 2.5030 = 4.1717 < 5.4232] w=0.9194 to align
# Constraint # added constraint: constraint((T0338)S167.CB, (T0338)I194.CB) [> 2.9583 = 4.9305 < 6.4096] w=0.9194 to align
# Constraint # added constraint: constraint((T0338)S167.CB, (T0338)C193.CB) [> 2.7486 = 4.5810 < 5.9553] w=0.9194 to align
# Constraint # added constraint: constraint((T0338)T166.CB, (T0338)A197.CB) [> 2.5124 = 4.1874 < 5.4436] w=0.9194 to align
# Constraint # added constraint: constraint((T0338)L163.CB, (T0338)A197.CB) [> 3.2894 = 5.4824 < 7.1271] w=0.9194 to align
# Constraint # added constraint: constraint((T0338)L163.CB, (T0338)I194.CB) [> 4.4669 = 7.4448 < 9.6783] w=0.9194 to align
# Constraint # added constraint: constraint((T0338)L83.CB, (T0338)I141.CB) [> 3.9237 = 6.5396 < 8.5014] w=0.9013 to align
# Constraint # added constraint: constraint((T0338)V87.CB, (T0338)I141.CB) [> 3.3747 = 5.6246 < 7.3119] w=0.9013 to align
# Constraint # added constraint: constraint((T0338)A34.CB, (T0338)N74.CB) [> 4.0608 = 6.7680 < 8.7985] w=0.8845 to align
# Constraint # added constraint: constraint((T0338)T154.CB, (T0338)I194.CB) [> 4.2262 = 7.0437 < 9.1568] w=0.8825 to align
# Constraint # added constraint: constraint((T0338)C191.CB, (T0338)L227.CB) [> 3.4578 = 5.7630 < 7.4919] w=0.8825 to align
# Constraint # added constraint: constraint((T0338)V188.CB, (T0338)L227.CB) [> 4.0637 = 6.7728 < 8.8047] w=0.8825 to align
# Constraint # added constraint: constraint((T0338)P146.CB, (T0338)C193.CB) [> 4.2020 = 7.0033 < 9.1042] w=0.8744 to align
# Constraint # added constraint: constraint((T0338)V150.CB, (T0338)A171.CB) [> 4.0571 = 6.7619 < 8.7905] w=0.8556 to align
# Constraint # added constraint: constraint((T0338)I38.CB, (T0338)A80.CB) [> 4.4479 = 7.4132 < 9.6372] w=0.8389 to align
# Constraint # added constraint: constraint((T0338)A55.CB, (T0338)S77.CB) [> 4.2996 = 7.1659 < 9.3157] w=0.8389 to align
# Constraint # added constraint: constraint((T0338)V150.CB, (T0338)C193.CB) [> 4.1554 = 6.9257 < 9.0035] w=0.8096 to align
# Constraint # added constraint: constraint((T0338)V188.CB, (T0338)V222.CB) [> 3.8888 = 6.4813 < 8.4256] w=0.8029 to align
# Constraint # added constraint: constraint((T0338)I189.CB, (T0338)L230.CB) [> 3.5942 = 5.9903 < 7.7875] w=0.8019 to align
# Constraint # added constraint: constraint((T0338)T154.CB, (T0338)A164.CB) [> 3.3063 = 5.5105 < 7.1636] w=0.8019 to align
# Constraint # added constraint: constraint((T0338)S48.CB, (T0338)E88.CB) [> 3.8055 = 6.3425 < 8.2452] w=0.8006 to align
# Constraint # added constraint: constraint((T0338)H147.CB, (T0338)A190.CB) [> 4.5847 = 7.6412 < 9.9335] w=0.7964 to align
# Constraint # added constraint: constraint((T0338)S174.CB, (T0338)I237.CB) [> 3.7390 = 6.2316 < 8.1011] w=0.7843 to align
# Constraint # added constraint: constraint((T0338)M170.CB, (T0338)L238.CB) [> 3.7900 = 6.3166 < 8.2116] w=0.7763 to align
# Constraint # added constraint: constraint((T0338)P146.CB, (T0338)L175.CB) [> 4.4037 = 7.3396 < 9.5414] w=0.7751 to align
# Constraint # added constraint: constraint((T0338)H147.CB, (T0338)A171.CB) [> 3.7674 = 6.2791 < 8.1628] w=0.7751 to align
# Constraint # added constraint: constraint((T0338)M170.CB, (T0338)F234.CB) [> 3.9444 = 6.5741 < 8.5463] w=0.7751 to align
# Constraint # added constraint: constraint((T0338)T166.CB, (T0338)S201.CB) [> 3.8095 = 6.3492 < 8.2539] w=0.7598 to align
# Constraint # added constraint: constraint((T0338)T166.CB, (T0338)W200.CB) [> 3.9184 = 6.5307 < 8.4899] w=0.7598 to align
# Constraint # added constraint: constraint((T0338)Y168.CB, (T0338)C193.CB) [> 4.5476 = 7.5794 < 9.8532] w=0.7593 to align
# Constraint # added constraint: constraint((T0338)S167.CB, (T0338)L196.CB) [> 4.5078 = 7.5131 < 9.7670] w=0.7593 to align
# Constraint # added constraint: constraint((T0338)Y63.CB, (T0338)I76.CB) [> 4.4105 = 7.3508 < 9.5561] w=0.7584 to align
# Constraint # added constraint: constraint((T0338)G42.CA, (T0338)T51.CB) [> 4.2424 = 7.0707 < 9.1918] w=0.7584 to align
# Constraint # added constraint: constraint((T0338)S167.CB, (T0338)A190.CB) [> 4.5359 = 7.5599 < 9.8279] w=0.7584 to align
# Constraint # added constraint: constraint((T0338)T79.CB, (T0338)I132.CB) [> 4.6116 = 7.6860 < 9.9918] w=0.7584 to align
# Constraint # added constraint: constraint((T0338)L196.CB, (T0338)L235.CB) [> 3.6917 = 6.1528 < 7.9987] w=0.7306 to align
# Constraint # added constraint: constraint((T0338)N173.CB, (T0338)L238.CB) [> 3.4112 = 5.6854 < 7.3910] w=0.7226 to align
# Constraint # added constraint: constraint((T0338)L50.CB, (T0338)H145.CB) [> 3.5997 = 5.9995 < 7.7993] w=0.7226 to align
# Constraint # added constraint: constraint((T0338)N53.CB, (T0338)H145.CB) [> 2.4164 = 4.0273 < 5.2355] w=0.7226 to align
# Constraint # added constraint: constraint((T0338)N53.CB, (T0338)P146.CB) [> 3.7588 = 6.2646 < 8.1440] w=0.7226 to align
# Constraint # added constraint: constraint((T0338)T54.CB, (T0338)I143.CB) [> 3.4939 = 5.8232 < 7.5702] w=0.7226 to align
# Constraint # added constraint: constraint((T0338)T54.CB, (T0338)H145.CB) [> 3.7875 = 6.3125 < 8.2062] w=0.7226 to align
# Constraint # added constraint: constraint((T0338)V57.CB, (T0338)I143.CB) [> 2.7511 = 4.5851 < 5.9607] w=0.7226 to align
# Constraint # added constraint: constraint((T0338)H60.CB, (T0338)L182.CB) [> 3.8667 = 6.4445 < 8.3779] w=0.7226 to align
# Constraint # added constraint: constraint((T0338)T154.CB, (T0338)S167.CB) [> 4.3869 = 7.3115 < 9.5049] w=0.7223 to align
# Constraint # added constraint: constraint((T0338)V192.CB, (T0338)L227.CB) [> 3.4891 = 5.8152 < 7.5598] w=0.7214 to align
# Constraint # added constraint: constraint((T0338)H147.CB, (T0338)Y168.CB) [> 3.6075 = 6.0124 < 7.8162] w=0.7214 to align
# Constraint # added constraint: constraint((T0338)A35.CB, (T0338)S77.CB) [> 4.5691 = 7.6151 < 9.8997] w=0.7159 to align
# Constraint # added constraint: constraint((T0338)C30.CB, (T0338)K73.CB) [> 3.6542 = 6.0902 < 7.9173] w=0.7038 to align
# Constraint # added constraint: constraint((T0338)I56.CB, (T0338)L175.CB) [> 3.1635 = 5.2725 < 6.8542] w=0.6957 to align
# Constraint # added constraint: constraint((T0338)N53.CB, (T0338)L175.CB) [> 4.0018 = 6.6696 < 8.6705] w=0.6957 to align
# Constraint # added constraint: constraint((T0338)Q39.CB, (T0338)T172.CB) [> 4.2225 = 7.0376 < 9.1488] w=0.6957 to align
# Constraint # added constraint: constraint((T0338)L163.CB, (T0338)S201.CB) [> 3.2400 = 5.4000 < 7.0199] w=0.6802 to align
# Constraint # added constraint: constraint((T0338)I38.CB, (T0338)M59.CB) [> 4.1768 = 6.9613 < 9.0498] w=0.6778 to align
# Constraint # added constraint: constraint((T0338)N36.CB, (T0338)H176.CB) [> 3.7153 = 6.1922 < 8.0498] w=0.6689 to align
# Constraint # added constraint: constraint((T0338)N173.CB, (T0338)T241.CB) [> 3.5345 = 5.8908 < 7.6580] w=0.6689 to align
# Constraint # added constraint: constraint((T0338)R31.CB, (T0338)Y63.CB) [> 4.2650 = 7.1083 < 9.2408] w=0.6501 to align
# Constraint # added constraint: constraint((T0338)C191.CB, (T0338)V222.CB) [> 3.2080 = 5.3467 < 6.9508] w=0.6432 to align
# Constraint # added constraint: constraint((T0338)Y58.CB, (T0338)I143.CB) [> 4.5374 = 7.5623 < 9.8310] w=0.6420 to align
# Constraint # added constraint: constraint((T0338)V87.CB, (T0338)T142.CB) [> 4.0801 = 6.8001 < 8.8402] w=0.6420 to align
# Constraint # added constraint: constraint((T0338)D149.CB, (T0338)C191.CB) [> 4.4741 = 7.4568 < 9.6939] w=0.6420 to align
# Constraint # added constraint: constraint((T0338)L50.CB, (T0338)T148.CB) [> 4.4031 = 7.3385 < 9.5400] w=0.6420 to align
# Constraint # added constraint: constraint((T0338)H195.CB, (T0338)L227.CB) [> 3.7543 = 6.2572 < 8.1344] w=0.6418 to align
# Constraint # added constraint: constraint((T0338)F180.CB, (T0338)E233.CB) [> 3.5811 = 5.9685 < 7.7591] w=0.6408 to align
# Constraint # added constraint: constraint((T0338)V150.CB, (T0338)Y168.CB) [> 3.4302 = 5.7170 < 7.4321] w=0.6408 to align
# Constraint # added constraint: constraint((T0338)V188.CB, (T0338)L226.CB) [> 3.8780 = 6.4633 < 8.4023] w=0.6408 to align
# Constraint # added constraint: constraint((T0338)V47.CB, (T0338)E89.CB) [> 3.8786 = 6.4642 < 8.4035] w=0.5984 to align
# Constraint # added constraint: constraint((T0338)S48.CB, (T0338)E89.CB) [> 3.7155 = 6.1925 < 8.0503] w=0.5984 to align
# Constraint # added constraint: constraint((T0338)V157.CB, (T0338)C198.CB) [> 4.5346 = 7.5576 < 9.8249] w=0.5890 to align
# Constraint # added constraint: constraint((T0338)T178.CB, (T0338)I237.CB) [> 2.9645 = 4.9409 < 6.4231] w=0.5695 to align
# Constraint # added constraint: constraint((T0338)Y58.CB, (T0338)I141.CB) [> 4.2100 = 7.0167 < 9.1217] w=0.5615 to align
# Constraint # added constraint: constraint((T0338)I98.CB, (T0338)L126.CB) [> 3.9788 = 6.6314 < 8.6208] w=0.5473 to align
# Constraint # added constraint: constraint((T0338)A35.CB, (T0338)L175.CB) [> 3.6462 = 6.0770 < 7.9001] w=0.5346 to align
# Constraint # added constraint: constraint((T0338)S78.CB, (T0338)Y119.CB) [> 3.8340 = 6.3900 < 8.3070] w=0.5297 to align
# Constraint # added constraint: constraint((T0338)N74.CB, (T0338)Y119.CB) [> 4.2528 = 7.0881 < 9.2145] w=0.5297 to align
# Constraint # added constraint: constraint((T0338)R61.CB, (T0338)T136.CB) [> 4.5096 = 7.5159 < 9.7707] w=0.5203 to align
# Constraint # added constraint: constraint((T0338)N72.CB, (T0338)L129.CB) [> 4.3839 = 7.3064 < 9.4984] w=0.5192 to align
# Constraint # added constraint: constraint((T0338)A164.CB, (T0338)A197.CB) [> 4.5928 = 7.6546 < 9.9510] w=0.5191 to align
# Constraint # added constraint: constraint((T0338)M41.CB, (T0338)S77.CB) [> 4.4307 = 7.3845 < 9.5998] w=0.5181 to align
# Constraint # added constraint: constraint((T0338)V157.CB, (T0338)I205.CB) [> 3.7862 = 6.3103 < 8.2034] w=0.5053 to align
# Constraint # added constraint: constraint((T0338)P146.CB, (T0338)S174.CB) [> 4.3096 = 7.1827 < 9.3376] w=0.5034 to align
# Constraint # added constraint: constraint((T0338)F180.CB, (T0338)I237.CB) [> 3.4987 = 5.8312 < 7.5806] w=0.4890 to align
# Constraint # added constraint: constraint((T0338)V47.CB, (T0338)L81.CB) [> 4.5829 = 7.6382 < 9.9296] w=0.4837 to align
# Constraint # added constraint: constraint((T0338)I52.CB, (T0338)L81.CB) [> 4.6063 = 7.6772 < 9.9803] w=0.4837 to align
# Constraint # added constraint: constraint((T0338)E95.CB, (T0338)T123.CB) [> 3.7670 = 6.2783 < 8.1618] w=0.4812 to align
# Constraint # added constraint: constraint((T0338)I52.CB, (T0338)T172.CB) [> 3.8646 = 6.4410 < 8.3733] w=0.4809 to align
# Constraint # added constraint: constraint((T0338)I52.CB, (T0338)L175.CB) [> 4.4097 = 7.3496 < 9.5544] w=0.4809 to align
# Constraint # added constraint: constraint((T0338)N53.CB, (T0338)A171.CB) [> 4.4007 = 7.3345 < 9.5349] w=0.4809 to align
# Constraint # added constraint: constraint((T0338)T54.CB, (T0338)I141.CB) [> 4.6307 = 7.7178 < 10.0331] w=0.4809 to align
# Constraint # added constraint: constraint((T0338)L196.CB, (T0338)L238.CB) [> 3.8445 = 6.4076 < 8.3298] w=0.4809 to align
# Constraint # added constraint: constraint((T0338)V151.CB, (T0338)A164.CB) [> 3.8622 = 6.4370 < 8.3682] w=0.4797 to align
# Constraint # added constraint: constraint((T0338)F169.CB, (T0338)A197.CB) [> 4.6454 = 7.7423 < 10.0650] w=0.4478 to align
# Constraint # added constraint: constraint((T0338)I98.CB, (T0338)T123.CB) [> 3.1268 = 5.2113 < 6.7748] w=0.4402 to align
# Constraint # added constraint: constraint((T0338)F82.CB, (T0338)L94.CB) [> 3.9072 = 6.5121 < 8.4657] w=0.4380 to align
# Constraint # added constraint: constraint((T0338)L45.CB, (T0338)H106.CB) [> 3.5033 = 5.8388 < 7.5905] w=0.4281 to align
# Constraint # added constraint: constraint((T0338)F82.CB, (T0338)L108.CB) [> 3.9483 = 6.5805 < 8.5546] w=0.4281 to align
# Constraint # added constraint: constraint((T0338)F82.CB, (T0338)L111.CB) [> 3.1750 = 5.2917 < 6.8791] w=0.4281 to align
# Constraint # added constraint: constraint((T0338)A85.CB, (T0338)L105.CB) [> 2.6996 = 4.4994 < 5.8492] w=0.4281 to align
# Constraint # added constraint: constraint((T0338)A85.CB, (T0338)H106.CB) [> 3.0905 = 5.1509 < 6.6962] w=0.4281 to align
# Constraint # added constraint: constraint((T0338)L108.CB, (T0338)T123.CB) [> 3.1251 = 5.2085 < 6.7711] w=0.4281 to align
# Constraint # added constraint: constraint((T0338)L108.CB, (T0338)L126.CB) [> 3.4782 = 5.7970 < 7.5362] w=0.4281 to align
# Constraint # added constraint: constraint((T0338)L108.CB, (T0338)V127.CB) [> 3.8779 = 6.4632 < 8.4021] w=0.4281 to align
# Constraint # added constraint: constraint((T0338)L112.CB, (T0338)T123.CB) [> 3.0389 = 5.0649 < 6.5844] w=0.4281 to align
# Constraint # added constraint: constraint((T0338)L112.CB, (T0338)L126.CB) [> 3.6786 = 6.1310 < 7.9703] w=0.4281 to align
# Constraint # added constraint: constraint((T0338)H195.CB, (T0338)I205.CB) [> 4.0074 = 6.6790 < 8.6827] w=0.4249 to align
# Constraint # added constraint: constraint((T0338)F82.CB, (T0338)V97.CB) [> 3.2796 = 5.4660 < 7.1057] w=0.4134 to align
# Constraint # added constraint: constraint((T0338)A34.CB, (T0338)I76.CB) [> 4.5796 = 7.6327 < 9.9225] w=0.4107 to align
# Constraint # added constraint: constraint((T0338)R19.CB, (T0338)M64.CB) [> 3.2033 = 5.3389 < 6.9405] w=0.4021 to align
# Constraint # added constraint: constraint((T0338)F180.CB, (T0338)F234.CB) [> 3.2908 = 5.4847 < 7.1302] w=0.4016 to align
# Constraint # added constraint: constraint((T0338)F71.CB, (T0338)L129.CB) [> 3.6884 = 6.1473 < 7.9915] w=0.4016 to align
# Constraint # added constraint: constraint((T0338)E109.CB, (T0338)T123.CB) [> 3.6393 = 6.0654 < 7.8851] w=0.4012 to align
# Constraint # added constraint: constraint((T0338)L94.CB, (T0338)T123.CB) [> 3.1653 = 5.2754 < 6.8580] w=0.4010 to align
# Constraint # added constraint: constraint((T0338)L28.CB, (T0338)T179.CB) [> 3.1875 = 5.3126 < 6.9063] w=0.4007 to align
# Constraint # added constraint: constraint((T0338)A84.CB, (T0338)I141.CB) [> 4.6933 = 7.8222 < 10.1689] w=0.4004 to align
# Constraint # added constraint: constraint((T0338)N53.CB, (T0338)T172.CB) [> 4.1671 = 6.9451 < 9.0286] w=0.4004 to align
# Constraint # added constraint: constraint((T0338)Q49.CB, (T0338)T172.CB) [> 3.9330 = 6.5551 < 8.5216] w=0.4004 to align
# Constraint # added constraint: constraint((T0338)K86.CB, (T0338)L105.CB) [> 3.0669 = 5.1115 < 6.6450] w=0.3986 to align
# Constraint # added constraint: constraint((T0338)S78.CB, (T0338)I98.CB) [> 4.1488 = 6.9147 < 8.9891] w=0.3862 to align
# Constraint # added constraint: constraint((T0338)C191.CB, (T0338)E216.CB) [> 3.6676 = 6.1126 < 7.9464] w=0.3750 to align
# Constraint # added constraint: constraint((T0338)M41.CB, (T0338)T114.CB) [> 3.3107 = 5.5178 < 7.1731] w=0.3750 to align
# Constraint # added constraint: constraint((T0338)L45.CB, (T0338)P110.CB) [> 4.2049 = 7.0082 < 9.1107] w=0.3750 to align
# Constraint # added constraint: constraint((T0338)C20.CB, (T0338)Y63.CB) [> 4.2276 = 7.0460 < 9.1599] w=0.3748 to align
# Constraint # added constraint: constraint((T0338)L112.CB, (T0338)Q122.CB) [> 3.8083 = 6.3472 < 8.2514] w=0.3747 to align
# Constraint # added constraint: constraint((T0338)N74.CB, (T0338)A118.CB) [> 3.8564 = 6.4274 < 8.3556] w=0.3744 to align
# Constraint # added constraint: constraint((T0338)L45.CB, (T0338)A85.CB) [> 4.5981 = 7.6634 < 9.9625] w=0.3592 to align
# Constraint # added constraint: constraint((T0338)T51.CB, (T0338)Q90.CB) [> 3.6936 = 6.1559 < 8.0027] w=0.3584 to align
# Constraint # added constraint: constraint((T0338)C20.CB, (T0338)R31.CB) [> 4.0906 = 6.8177 < 8.8630] w=0.3484 to align
# Constraint # added constraint: constraint((T0338)R19.CB, (T0338)L182.CB) [> 4.3306 = 7.2176 < 9.3829] w=0.3484 to align
# Constraint # added constraint: constraint((T0338)R44.CB, (T0338)T114.CB) [> 3.8735 = 6.4559 < 8.3926] w=0.3480 to align
# Constraint # added constraint: constraint((T0338)S78.CB, (T0338)K115.CB) [> 3.5608 = 5.9346 < 7.7150] w=0.3479 to align
# Constraint # added constraint: constraint((T0338)F7.CB, (T0338)T187.CB) [> 4.0173 = 6.6955 < 8.7041] w=0.3478 to align
# Constraint # added constraint: constraint((T0338)L175.CB, (T0338)I189.CB) [> 4.0959 = 6.8265 < 8.8744] w=0.3475 to align
# Constraint # added constraint: constraint((T0338)K26.CB, (T0338)F68.CB) [> 3.5804 = 5.9674 < 7.7576] w=0.3475 to align
# Constraint # added constraint: constraint((T0338)S78.CB, (T0338)A101.CB) [> 3.3735 = 5.6225 < 7.3092] w=0.3459 to align
# Constraint # added constraint: constraint((T0338)T166.CB, (T0338)L196.CB) [> 4.7211 = 7.8685 < 10.2290] w=0.3303 to align
# Constraint # added constraint: constraint((T0338)A85.CB, (T0338)V97.CB) [> 4.1854 = 6.9757 < 9.0684] w=0.3284 to align
# Constraint # added constraint: constraint((T0338)F71.CB, (T0338)I132.CB) [> 4.3581 = 7.2635 < 9.4425] w=0.3235 to align
# Constraint # added constraint: constraint((T0338)S174.CB, (T0338)Y184.CB) [> 4.6028 = 7.6714 < 9.9728] w=0.3222 to align
# Constraint # added constraint: constraint((T0338)V207.CB, (T0338)L224.CB) [> 3.1133 = 5.1888 < 6.7455] w=0.3214 to align
# Constraint # added constraint: constraint((T0338)H65.CB, (T0338)L137.CB) [> 4.1993 = 6.9988 < 9.0985] w=0.3210 to align
# Constraint # added constraint: constraint((T0338)T178.CB, (T0338)T241.CB) [> 3.8163 = 6.3605 < 8.2686] w=0.3208 to align
# Constraint # added constraint: constraint((T0338)R61.CB, (T0338)I143.CB) [> 4.7024 = 7.8374 < 10.1886] w=0.3208 to align
# Constraint # added constraint: constraint((T0338)F82.CB, (T0338)L105.CB) [> 4.5963 = 7.6605 < 9.9586] w=0.3189 to align
# Constraint # added constraint: constraint((T0338)C181.CB, (T0338)F234.CB) [> 3.7426 = 6.2377 < 8.1090] w=0.3173 to align
# Constraint # added constraint: constraint((T0338)T51.CB, (T0338)V87.CB) [> 4.5842 = 7.6404 < 9.9326] w=0.3155 to align
# Constraint # added constraint: constraint((T0338)Q33.CB, (T0338)K73.CB) [> 4.1627 = 6.9378 < 9.0191] w=0.3117 to align
# Constraint # added constraint: constraint((T0338)L45.CB, (T0338)V97.CB) [> 4.2816 = 7.1360 < 9.2768] w=0.3086 to align
# Constraint # added constraint: constraint((T0338)M41.CB, (T0338)V100.CB) [> 3.3662 = 5.6104 < 7.2935] w=0.3060 to align
# Constraint # added constraint: constraint((T0338)L45.CB, (T0338)V100.CB) [> 3.5474 = 5.9123 < 7.6860] w=0.3037 to align
# Constraint # added constraint: constraint((T0338)L28.CB, (T0338)T178.CB) [> 3.2576 = 5.4293 < 7.0580] w=0.2953 to align
# Constraint # added constraint: constraint((T0338)N74.CB, (T0338)K115.CB) [> 3.6441 = 6.0735 < 7.8956] w=0.2949 to align
# Constraint # added constraint: constraint((T0338)K212.CB, (T0338)V222.CB) [> 3.7076 = 6.1793 < 8.0330] w=0.2945 to align
# Constraint # added constraint: constraint((T0338)K26.CB, (T0338)Y63.CB) [> 4.5142 = 7.5236 < 9.7807] w=0.2938 to align
# Constraint # added constraint: constraint((T0338)R31.CB, (T0338)T179.CB) [> 3.3733 = 5.6221 < 7.3088] w=0.2930 to align
# Constraint # added constraint: constraint((T0338)R31.CB, (T0338)H60.CB) [> 4.6240 = 7.7066 < 10.0186] w=0.2756 to align
# Constraint # added constraint: constraint((T0338)F68.CB, (T0338)I132.CB) [> 3.7087 = 6.1812 < 8.0355] w=0.2694 to align
# Constraint # added constraint: constraint((T0338)S78.CB, (T0338)T114.CB) [> 4.3866 = 7.3111 < 9.5044] w=0.2685 to align
# Constraint # added constraint: constraint((T0338)S29.CB, (T0338)L245.CB) [> 4.2309 = 7.0515 < 9.1669] w=0.2685 to align
# Constraint # added constraint: constraint((T0338)Q33.CB, (T0338)L245.CB) [> 3.9351 = 6.5586 < 8.5261] w=0.2679 to align
# Constraint # added constraint: constraint((T0338)H195.CB, (T0338)S208.CB) [> 3.6381 = 6.0636 < 7.8826] w=0.2677 to align
# Constraint # added constraint: constraint((T0338)M41.CB, (T0338)A101.CB) [> 3.5230 = 5.8717 < 7.6333] w=0.2663 to align
# Constraint # added constraint: constraint((T0338)L163.CB, (T0338)W203.CB) [> 3.4228 = 5.7046 < 7.4160] w=0.2651 to align
# Constraint # added constraint: constraint((T0338)K86.CB, (T0338)I141.CB) [> 3.3196 = 5.5327 < 7.1926] w=0.2593 to align
# Constraint # added constraint: constraint((T0338)V47.CB, (T0338)Q90.CB) [> 4.2011 = 7.0018 < 9.1024] w=0.2571 to align
# Constraint # added constraint: constraint((T0338)M41.CB, (T0338)V97.CB) [> 4.4434 = 7.4057 < 9.6275] w=0.2523 to align
# Constraint # added constraint: constraint((T0338)S78.CB, (T0338)V97.CB) [> 3.3289 = 5.5482 < 7.2127] w=0.2523 to align
# Constraint # added constraint: constraint((T0338)F180.CB, (T0338)L238.CB) [> 4.4926 = 7.4876 < 9.7339] w=0.2416 to align
# Constraint # added constraint: constraint((T0338)T178.CB, (T0338)L238.CB) [> 3.5815 = 5.9692 < 7.7599] w=0.2416 to align
# Constraint # added constraint: constraint((T0338)V22.CB, (T0338)F68.CB) [> 3.8347 = 6.3912 < 8.3085] w=0.2416 to align
# Constraint # added constraint: constraint((T0338)Q32.CB, (T0338)L177.CB) [> 3.9282 = 6.5470 < 8.5111] w=0.2416 to align
# Constraint # added constraint: constraint((T0338)L177.CB, (T0338)I237.CB) [> 3.9594 = 6.5990 < 8.5787] w=0.2416 to align
# Constraint # added constraint: constraint((T0338)H195.CB, (T0338)L224.CB) [> 4.0831 = 6.8052 < 8.8467] w=0.2416 to align
# Constraint # added constraint: constraint((T0338)I75.CB, (T0338)A118.CB) [> 4.6409 = 7.7348 < 10.0553] w=0.2412 to align
# Constraint # added constraint: constraint((T0338)F6.CB, (T0338)E144.CB) [> 3.0935 = 5.1558 < 6.7025] w=0.2409 to align
# Constraint # added constraint: constraint((T0338)R9.CB, (T0338)E144.CB) [> 3.2184 = 5.3640 < 6.9732] w=0.2409 to align
# Constraint # added constraint: constraint((T0338)E13.CB, (T0338)I143.CB) [> 2.9509 = 4.9181 < 6.3935] w=0.2409 to align
# Constraint # added constraint: constraint((T0338)C153.CB, (T0338)E216.CB) [> 4.1409 = 6.9015 < 8.9719] w=0.2408 to align
# Constraint # added constraint: constraint((T0338)C153.CB, (T0338)T187.CB) [> 4.6717 = 7.7861 < 10.1220] w=0.2407 to align
# Constraint # added constraint: constraint((T0338)C30.CB, (T0338)F68.CB) [> 3.7161 = 6.1935 < 8.0516] w=0.2407 to align
# Constraint # added constraint: constraint((T0338)N53.CB, (T0338)I143.CB) [> 4.4500 = 7.4167 < 9.6417] w=0.2407 to align
# Constraint # added constraint: constraint((T0338)V192.CB, (T0338)L235.CB) [> 3.9994 = 6.6657 < 8.6654] w=0.2407 to align
# Constraint # added constraint: constraint((T0338)L83.CB, (T0338)F139.CB) [> 4.2534 = 7.0890 < 9.2156] w=0.2405 to align
# Constraint # added constraint: constraint((T0338)C191.CB, (T0338)Y217.CB) [> 3.7134 = 6.1890 < 8.0457] w=0.2405 to align
# Constraint # added constraint: constraint((T0338)L156.CB, (T0338)W214.CB) [> 3.2560 = 5.4267 < 7.0547] w=0.2405 to align
# Constraint # added constraint: constraint((T0338)C153.CB, (T0338)G211.CA) [> 4.3251 = 7.2085 < 9.3711] w=0.2405 to align
# Constraint # added constraint: constraint((T0338)V57.CB, (T0338)L182.CB) [> 4.5530 = 7.5883 < 9.8648] w=0.2402 to align
# Constraint # added constraint: constraint((T0338)L94.CB, (T0338)V127.CB) [> 3.9166 = 6.5277 < 8.4860] w=0.2399 to align
# Constraint # added constraint: constraint((T0338)I56.CB, (T0338)L182.CB) [> 4.3946 = 7.3244 < 9.5217] w=0.2393 to align
# Constraint # added constraint: constraint((T0338)Q39.CB, (T0338)H176.CB) [> 3.6584 = 6.0973 < 7.9265] w=0.2393 to align
# Constraint # added constraint: constraint((T0338)A159.CB, (T0338)W203.CB) [> 3.6713 = 6.1187 < 7.9544] w=0.2379 to align
# Constraint # added constraint: constraint((T0338)S78.CB, (T0338)E125.CB) [> 4.4755 = 7.4592 < 9.6969] w=0.2349 to align
# Constraint # added constraint: constraint((T0338)R44.CB, (T0338)V100.CB) [> 2.8922 = 4.8203 < 6.2664] w=0.2264 to align
# Constraint # added constraint: constraint((T0338)C191.CB, (T0338)W215.CB) [> 3.0577 = 5.0962 < 6.6251] w=0.2259 to align
# Constraint # added constraint: constraint((T0338)I98.CB, (T0338)Y119.CB) [> 2.9167 = 4.8612 < 6.3196] w=0.2258 to align
# Constraint # added constraint: constraint((T0338)N74.CB, (T0338)H102.CB) [> 3.8909 = 6.4848 < 8.4302] w=0.2171 to align
# Constraint # added constraint: constraint((T0338)G21.CA, (T0338)T69.CB) [> 3.8278 = 6.3797 < 8.2936] w=0.2148 to align
# Constraint # added constraint: constraint((T0338)L28.CB, (T0338)L177.CB) [> 4.4317 = 7.3861 < 9.6019] w=0.2148 to align
# Constraint # added constraint: constraint((T0338)F6.CB, (T0338)D149.CB) [> 4.1234 = 6.8724 < 8.9341] w=0.2140 to align
# Constraint # added constraint: constraint((T0338)F6.CB, (T0338)T187.CB) [> 4.3394 = 7.2323 < 9.4020] w=0.2140 to align
# Constraint # added constraint: constraint((T0338)L156.CB, (T0338)G211.CA) [> 3.6455 = 6.0759 < 7.8986] w=0.2140 to align
# Constraint # added constraint: constraint((T0338)S78.CB, (T0338)L112.CB) [> 4.5745 = 7.6242 < 9.9115] w=0.2139 to align
# Constraint # added constraint: constraint((T0338)K212.CB, (T0338)T223.CB) [> 3.5418 = 5.9029 < 7.6738] w=0.2139 to align
# Constraint # added constraint: constraint((T0338)T187.CB, (T0338)W215.CB) [> 3.4041 = 5.6736 < 7.3756] w=0.2136 to align
# Constraint # added constraint: constraint((T0338)A159.CB, (T0338)I205.CB) [> 4.2721 = 7.1202 < 9.2563] w=0.2109 to align
# Constraint # added constraint: constraint((T0338)L83.CB, (T0338)L137.CB) [> 4.6428 = 7.7379 < 10.0593] w=0.2061 to align
# Constraint # added constraint: constraint((T0338)F71.CB, (T0338)E125.CB) [> 4.3727 = 7.2879 < 9.4743] w=0.1994 to align
# Constraint # added constraint: constraint((T0338)K99.CB, (T0338)Y119.CB) [> 3.9471 = 6.5785 < 8.5521] w=0.1991 to align
# Constraint # added constraint: constraint((T0338)A35.CB, (T0338)H60.CB) [> 4.5125 = 7.5208 < 9.7770] w=0.1981 to align
# Constraint # added constraint: constraint((T0338)A159.CB, (T0338)C198.CB) [> 3.7754 = 6.2924 < 8.1802] w=0.1969 to align
# Constraint # added constraint: constraint((T0338)S78.CB, (T0338)H102.CB) [> 3.8768 = 6.4614 < 8.3998] w=0.1899 to align
# Constraint # added constraint: constraint((T0338)L108.CB, (T0338)E130.CB) [> 4.6173 = 7.6955 < 10.0042] w=0.1892 to align
# Constraint # added constraint: constraint((T0338)V97.CB, (T0338)T123.CB) [> 4.7059 = 7.8431 < 10.1961] w=0.1879 to align
# Constraint # added constraint: constraint((T0338)N173.CB, (T0338)R249.CB) [> 3.5135 = 5.8558 < 7.6126] w=0.1879 to align
# Constraint # added constraint: constraint((T0338)F169.CB, (T0338)R249.CB) [> 3.9999 = 6.6665 < 8.6664] w=0.1879 to align
# Constraint # added constraint: constraint((T0338)R9.CB, (T0338)I143.CB) [> 4.3310 = 7.2183 < 9.3838] w=0.1879 to align
# Constraint # added constraint: constraint((T0338)I98.CB, (T0338)L120.CB) [> 4.2388 = 7.0647 < 9.1841] w=0.1875 to align
# Constraint # added constraint: constraint((T0338)L156.CB, (T0338)W215.CB) [> 3.8428 = 6.4047 < 8.3261] w=0.1875 to align
# Constraint # added constraint: constraint((T0338)F7.CB, (T0338)E144.CB) [> 3.5697 = 5.9496 < 7.7344] w=0.1875 to align
# Constraint # added constraint: constraint((T0338)L156.CB, (T0338)D219.CB) [> 3.2106 = 5.3509 < 6.9562] w=0.1871 to align
# Constraint # added constraint: constraint((T0338)I143.CB, (T0338)P186.CB) [> 4.4771 = 7.4618 < 9.7003] w=0.1870 to align
# Constraint # added constraint: constraint((T0338)V22.CB, (T0338)M64.CB) [> 4.0787 = 6.7978 < 8.8371] w=0.1868 to align
# Constraint # added constraint: constraint((T0338)E88.CB, (T0338)L105.CB) [> 4.6648 = 7.7747 < 10.1071] w=0.1851 to align
# Constraint # added constraint: constraint((T0338)A103.CB, (T0338)Y119.CB) [> 3.6562 = 6.0937 < 7.9218] w=0.1849 to align
# Constraint # added constraint: constraint((T0338)K86.CB, (T0338)T142.CB) [> 4.4164 = 7.3607 < 9.5689] w=0.1814 to align
# Constraint # added constraint: constraint((T0338)G42.CA, (T0338)V100.CB) [> 4.1516 = 6.9193 < 8.9951] w=0.1673 to align
# Constraint # added constraint: constraint((T0338)V87.CB, (T0338)F139.CB) [> 4.5008 = 7.5013 < 9.7516] w=0.1624 to align
# Constraint # added constraint: constraint((T0338)M64.CB, (T0338)L182.CB) [> 4.4755 = 7.4591 < 9.6969] w=0.1611 to align
# Constraint # added constraint: constraint((T0338)H60.CB, (T0338)C181.CB) [> 3.8786 = 6.4643 < 8.4036] w=0.1611 to align
# Constraint # added constraint: constraint((T0338)V57.CB, (T0338)C181.CB) [> 3.4046 = 5.6743 < 7.3766] w=0.1611 to align
# Constraint # added constraint: constraint((T0338)I56.CB, (T0338)C181.CB) [> 4.2053 = 7.0089 < 9.1116] w=0.1611 to align
# Constraint # added constraint: constraint((T0338)T166.CB, (T0338)C198.CB) [> 4.6924 = 7.8207 < 10.1669] w=0.1611 to align
# Constraint # added constraint: constraint((T0338)F180.CB, (T0338)I189.CB) [> 3.6618 = 6.1031 < 7.9340] w=0.1611 to align
# Constraint # added constraint: constraint((T0338)V188.CB, (T0338)T231.CB) [> 4.4753 = 7.4588 < 9.6964] w=0.1611 to align
# Constraint # added constraint: constraint((T0338)K152.CB, (T0338)W214.CB) [> 4.2315 = 7.0525 < 9.1683] w=0.1611 to align
# Constraint # added constraint: constraint((T0338)D149.CB, (T0338)I189.CB) [> 4.5474 = 7.5791 < 9.8528] w=0.1611 to align
# Constraint # added constraint: constraint((T0338)L37.CB, (T0338)I248.CB) [> 4.4569 = 7.4282 < 9.6567] w=0.1611 to align
# Constraint # added constraint: constraint((T0338)F169.CB, (T0338)A253.CB) [> 2.5640 = 4.2734 < 5.5554] w=0.1611 to align
# Constraint # added constraint: constraint((T0338)Y168.CB, (T0338)A253.CB) [> 4.5993 = 7.6656 < 9.9653] w=0.1611 to align
# Constraint # added constraint: constraint((T0338)Q165.CB, (T0338)A253.CB) [> 4.0713 = 6.7855 < 8.8211] w=0.1611 to align
# Constraint # added constraint: constraint((T0338)V22.CB, (T0338)Y63.CB) [> 4.5710 = 7.6183 < 9.9038] w=0.1605 to align
# Constraint # added constraint: constraint((T0338)V207.CB, (T0338)D228.CB) [> 3.8613 = 6.4355 < 8.3662] w=0.1603 to align
# Constraint # added constraint: constraint((T0338)A103.CB, (T0338)L120.CB) [> 3.6032 = 6.0053 < 7.8069] w=0.1603 to align
# Constraint # added constraint: constraint((T0338)L12.CB, (T0338)K185.CB) [> 3.8873 = 6.4788 < 8.4224] w=0.1603 to align
# Constraint # added constraint: constraint((T0338)I38.CB, (T0338)S78.CB) [> 4.5644 = 7.6074 < 9.8897] w=0.1602 to align
# Constraint # added constraint: constraint((T0338)C193.CB, (T0338)L238.CB) [> 4.5265 = 7.5442 < 9.8074] w=0.1602 to align
# Constraint # added constraint: constraint((T0338)S67.CB, (T0338)T136.CB) [> 2.6068 = 4.3447 < 5.6481] w=0.1599 to align
# Constraint # added constraint: constraint((T0338)W215.CB, (T0338)L227.CB) [> 4.3437 = 7.2395 < 9.4114] w=0.1599 to align
# Constraint # added constraint: constraint((T0338)C181.CB, (T0338)L230.CB) [> 3.8097 = 6.3495 < 8.2544] w=0.1586 to align
# Constraint # added constraint: constraint((T0338)T79.CB, (T0338)V127.CB) [> 4.7882 = 7.9804 < 10.3745] w=0.1519 to align
# Constraint # added constraint: constraint((T0338)R158.CB, (T0338)W203.CB) [> 4.6717 = 7.7862 < 10.1220] w=0.1519 to align
# Constraint # added constraint: constraint((T0338)I194.CB, (T0338)W215.CB) [> 4.3938 = 7.3230 < 9.5199] w=0.1462 to align
# Constraint # added constraint: constraint((T0338)R9.CB, (T0338)T142.CB) [> 4.6349 = 7.7248 < 10.0423] w=0.1342 to align
# Constraint # added constraint: constraint((T0338)H96.CB, (T0338)T123.CB) [> 3.7901 = 6.3169 < 8.2119] w=0.1339 to align
# Constraint # added constraint: constraint((T0338)K99.CB, (T0338)T123.CB) [> 2.9965 = 4.9942 < 6.4924] w=0.1339 to align
# Constraint # added constraint: constraint((T0338)I75.CB, (T0338)L120.CB) [> 4.5978 = 7.6630 < 9.9618] w=0.1338 to align
# Constraint # added constraint: constraint((T0338)V188.CB, (T0338)W215.CB) [> 4.2877 = 7.1461 < 9.2899] w=0.1331 to align
# Constraint # added constraint: constraint((T0338)Y217.CB, (T0338)L226.CB) [> 3.9574 = 6.5957 < 8.5744] w=0.1331 to align
# Constraint # added constraint: constraint((T0338)L37.CB, (T0338)S78.CB) [> 4.7005 = 7.8341 < 10.1844] w=0.1256 to align
# Constraint # added constraint: constraint((T0338)V157.CB, (T0338)W214.CB) [> 3.3629 = 5.6049 < 7.2864] w=0.1193 to align
# Constraint # added constraint: constraint((T0338)A34.CB, (T0338)Y63.CB) [> 4.1980 = 6.9966 < 9.0956] w=0.1150 to align
# Constraint # added constraint: constraint((T0338)V97.CB, (T0338)L111.CB) [> 3.7215 = 6.2025 < 8.0633] w=0.1074 to align
# Constraint # added constraint: constraint((T0338)H96.CB, (T0338)L111.CB) [> 4.5312 = 7.5520 < 9.8175] w=0.1074 to align
# Constraint # added constraint: constraint((T0338)C30.CB, (T0338)R249.CB) [> 3.7504 = 6.2506 < 8.1258] w=0.1074 to align
# Constraint # added constraint: constraint((T0338)I98.CB, (T0338)L111.CB) [> 4.2250 = 7.0416 < 9.1541] w=0.1074 to align
# Constraint # added constraint: constraint((T0338)I98.CB, (T0338)L112.CB) [> 3.5014 = 5.8356 < 7.5863] w=0.1074 to align
# Constraint # added constraint: constraint((T0338)C198.CB, (T0338)S208.CB) [> 4.3587 = 7.2646 < 9.4440] w=0.1074 to align
# Constraint # added constraint: constraint((T0338)T187.CB, (T0338)W214.CB) [> 4.1603 = 6.9338 < 9.0140] w=0.1071 to align
# Constraint # added constraint: constraint((T0338)C153.CB, (T0338)Y217.CB) [> 4.1183 = 6.8638 < 8.9230] w=0.1071 to align
# Constraint # added constraint: constraint((T0338)I75.CB, (T0338)A103.CB) [> 3.1838 = 5.3064 < 6.8983] w=0.0925 to align
# Constraint # added constraint: constraint((T0338)A103.CB, (T0338)L126.CB) [> 3.5462 = 5.9104 < 7.6835] w=0.0925 to align
# Constraint # added constraint: constraint((T0338)C104.CB, (T0338)T123.CB) [> 3.1577 = 5.2628 < 6.8416] w=0.0925 to align
# Constraint # added constraint: constraint((T0338)C104.CB, (T0338)L126.CB) [> 4.1791 = 6.9652 < 9.0547] w=0.0925 to align
# Constraint # added constraint: constraint((T0338)S67.CB, (T0338)I76.CB) [> 3.6282 = 6.0471 < 7.8612] w=0.0886 to align
# Constraint # added constraint: constraint((T0338)L163.CB, (T0338)W200.CB) [> 4.7660 = 7.9434 < 10.3264] w=0.0861 to align
# Constraint # added constraint: constraint((T0338)L94.CB, (T0338)E130.CB) [> 4.7733 = 7.9556 < 10.3423] w=0.0842 to align
# Constraint # added constraint: constraint((T0338)F62.CB, (T0338)T79.CB) [> 4.7086 = 7.8477 < 10.2020] w=0.0805 to align
# Constraint # added constraint: constraint((T0338)V57.CB, (T0338)P186.CB) [> 4.7835 = 7.9726 < 10.3644] w=0.0805 to align
# Constraint # added constraint: constraint((T0338)Q155.CB, (T0338)H213.CB) [> 4.5244 = 7.5407 < 9.8029] w=0.0805 to align
# Constraint # added constraint: constraint((T0338)K185.CB, (T0338)V218.CB) [> 3.9347 = 6.5579 < 8.5252] w=0.0805 to align
# Constraint # added constraint: constraint((T0338)F6.CB, (T0338)K152.CB) [> 4.2593 = 7.0989 < 9.2285] w=0.0802 to align
# Constraint # added constraint: constraint((T0338)V157.CB, (T0338)V207.CB) [> 4.1279 = 6.8797 < 8.9437] w=0.0802 to align
# Constraint # added constraint: constraint((T0338)L12.CB, (T0338)P186.CB) [> 3.7441 = 6.2402 < 8.1123] w=0.0798 to align
# Constraint # added constraint: constraint((T0338)R31.CB, (T0338)L182.CB) [> 4.7658 = 7.9430 < 10.3260] w=0.0796 to align
# Constraint # added constraint: constraint((T0338)Q49.CB, (T0338)A164.CB) [> 4.5441 = 7.5735 < 9.8456] w=0.0796 to align
# Constraint # added constraint: constraint((T0338)S174.CB, (T0338)L235.CB) [> 4.6383 = 7.7305 < 10.0496] w=0.0796 to align
# Constraint # added constraint: constraint((T0338)L37.CB, (T0338)A101.CB) [> 4.5391 = 7.5652 < 9.8347] w=0.0783 to align
# Constraint # added constraint: constraint((T0338)S77.CB, (T0338)A101.CB) [> 4.6727 = 7.7878 < 10.1242] w=0.0783 to align
# Constraint # added constraint: constraint((T0338)C181.CB, (T0338)V192.CB) [> 4.5954 = 7.6591 < 9.9568] w=0.0780 to align
# Constraint # added constraint: constraint((T0338)A101.CB, (T0338)D113.CB) [> 3.2875 = 5.4792 < 7.1230] w=0.0660 to align
# Constraint # added constraint: constraint((T0338)S78.CB, (T0338)V100.CB) [> 4.4302 = 7.3837 < 9.5988] w=0.0638 to align
# Constraint # added constraint: constraint((T0338)A91.CB, (T0338)V151.CB) [> 4.6622 = 7.7704 < 10.1015] w=0.0591 to align
# Constraint # added constraint: constraint((T0338)C191.CB, (T0338)D219.CB) [> 4.6228 = 7.7047 < 10.0161] w=0.0559 to align
# Constraint # added constraint: constraint((T0338)V47.CB, (T0338)C104.CB) [> 4.5767 = 7.6279 < 9.9162] w=0.0559 to align
# Constraint # added constraint: constraint((T0338)E40.CB, (T0338)T114.CB) [> 4.5203 = 7.5339 < 9.7940] w=0.0541 to align
# Constraint # added constraint: constraint((T0338)C30.CB, (T0338)L245.CB) [> 4.2045 = 7.0075 < 9.1097] w=0.0537 to align
# Constraint # added constraint: constraint((T0338)C30.CB, (T0338)I248.CB) [> 3.2145 = 5.3576 < 6.9648] w=0.0537 to align
# Constraint # added constraint: constraint((T0338)A101.CB, (T0338)T114.CB) [> 3.1105 = 5.1842 < 6.7395] w=0.0537 to align
# Constraint # added constraint: constraint((T0338)P107.CB, (T0338)T123.CB) [> 4.6313 = 7.7188 < 10.0345] w=0.0537 to align
# Constraint # added constraint: constraint((T0338)C20.CB, (T0338)L182.CB) [> 4.7751 = 7.9585 < 10.3461] w=0.0537 to align
# Constraint # added constraint: constraint((T0338)S3.CB, (T0338)W215.CB) [> 4.1151 = 6.8586 < 8.9162] w=0.0537 to align
# Constraint # added constraint: constraint((T0338)S3.CB, (T0338)E216.CB) [> 4.6941 = 7.8234 < 10.1705] w=0.0537 to align
# Constraint # added constraint: constraint((T0338)T166.CB, (T0338)A253.CB) [> 4.7918 = 7.9864 < 10.3823] w=0.0537 to align
# Constraint # added constraint: constraint((T0338)W214.CB, (T0338)L224.CB) [> 3.8131 = 6.3552 < 8.2617] w=0.0529 to align
# Constraint # added constraint: constraint((T0338)T154.CB, (T0338)I205.CB) [> 4.4216 = 7.3693 < 9.5801] w=0.0527 to align
# Constraint # added constraint: constraint((T0338)T79.CB, (T0338)L134.CB) [> 4.4565 = 7.4276 < 9.6558] w=0.0450 to align
# Constraint # added constraint: constraint((T0338)I194.CB, (T0338)W214.CB) [> 4.0619 = 6.7698 < 8.8007] w=0.0392 to align
# Constraint # added constraint: constraint((T0338)A91.CB, (T0338)C198.CB) [> 4.0360 = 6.7266 < 8.7445] w=0.0370 to align
# Constraint # added constraint: constraint((T0338)H102.CB, (T0338)T123.CB) [> 3.4289 = 5.7149 < 7.4294] w=0.0369 to align
# Constraint # added constraint: constraint((T0338)S48.CB, (T0338)C104.CB) [> 4.1707 = 6.9511 < 9.0365] w=0.0295 to align
# Constraint # added constraint: constraint((T0338)V87.CB, (T0338)A103.CB) [> 4.6790 = 7.7983 < 10.1378] w=0.0295 to align
# Constraint # added constraint: constraint((T0338)A34.CB, (T0338)I143.CB) [> 4.2508 = 7.0847 < 9.2101] w=0.0268 to align
# Constraint # added constraint: constraint((T0338)L12.CB, (T0338)E140.CB) [> 4.2224 = 7.0373 < 9.1485] w=0.0268 to align
# Constraint # added constraint: constraint((T0338)Q33.CB, (T0338)I248.CB) [> 4.7955 = 7.9924 < 10.3902] w=0.0268 to align
# Constraint # added constraint: constraint((T0338)K26.CB, (T0338)Q183.CB) [> 2.5631 = 4.2718 < 5.5533] w=0.0268 to align
# Constraint # added constraint: constraint((T0338)V157.CB, (T0338)K199.CB) [> 4.7203 = 7.8672 < 10.2274] w=0.0268 to align
# Constraint # added constraint: constraint((T0338)T154.CB, (T0338)W200.CB) [> 4.5397 = 7.5662 < 9.8361] w=0.0268 to align
# Constraint # added constraint: constraint((T0338)T154.CB, (T0338)W214.CB) [> 4.5398 = 7.5662 < 9.8361] w=0.0268 to align
# Constraint # added constraint: constraint((T0338)C30.CB, (T0338)A253.CB) [> 3.6834 = 6.1391 < 7.9808] w=0.0268 to align
# Constraint # added constraint: constraint((T0338)S3.CB, (T0338)S208.CB) [> 3.3296 = 5.5493 < 7.2140] w=0.0265 to align
# Constraint # added constraint: constraint((T0338)E13.CB, (T0338)Y184.CB) [> 4.7494 = 7.9157 < 10.2904] w=0.0264 to align
# Constraint # added constraint: constraint((T0338)F7.CB, (T0338)K185.CB) [> 4.7096 = 7.8494 < 10.2042] w=0.0264 to align
# Constraint # added constraint: constraint((T0338)M170.CB, (T0338)I248.CB) [> 2.7009 = 4.5015 < 5.8519] w=0.0260 to align
# Constraint # added constraint: constraint((T0338)T142.CB, (T0338)Y184.CB) [> 3.7434 = 6.2389 < 8.1106] w=0.0246 to align
# Constraint # added constraint: constraint((T0338)D113.CB, (T0338)T123.CB) [> 4.2771 = 7.1285 < 9.2670] w=0.0123 to align
# Constraint # added constraint: constraint((T0338)H145.CB, (T0338)Y184.CB) [> 3.6609 = 6.1015 < 7.9319] w=0.0123 to align
# Constraint # added constraint: constraint((T0338)K86.CB, (T0338)F139.CB) [> 4.7152 = 7.8587 < 10.2163] w=0.0081 to align
# SetCost created cost = 
#	( 1.0000 * align )
# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0338/
# command:# reading script from file servers-clean.under
# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0338/decoys/
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS5
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS5
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS1
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS2
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS3
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS4
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS5
# ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1
# choosing archetypes in rotamer library
# Found a chain break before 210
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS1
# ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1
# Found a chain break before 5
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS2
# ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1
# Found a chain break before 180
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS3
# ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1
# naming current conformation 3Dpro_TS4
# ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1
# Found a chain break before 181
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS5
# ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1
# Found a chain break before 220
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS1
# ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1
# Found a chain break before 190
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS2
# ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1
# Found a chain break before 231
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS3
# ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1
# Found a chain break before 226
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS4
# ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1
# Found a chain break before 248
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS5
# ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1
# Found a chain break before 118
# copying to AlignedFragments data structure
# naming current conformation BayesHH_TS1
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1
# Found a chain break before 219
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS1
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1
# Found a chain break before 220
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS2
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1
# Found a chain break before 246
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS3
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1
# Found a chain break before 246
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS4
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1
# Found a chain break before 213
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS5
# ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1
# Found a chain break before 246
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS1
# ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS2
# ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS3
# ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS4
# ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS5
# ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation CPHmodels_TS1
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS1
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS2
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS3
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS4
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS5
# ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Distill_TS1
# ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Distill_TS2
# ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Distill_TS3
# ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Distill_TS4
# ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Distill_TS5
# ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1
# Found a chain break before 252
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS1
# ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS2
# ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS3
# ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS4
# ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS5
# ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1
# Found a chain break before 245
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS1
# ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FAMS_TS2
# ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FAMS_TS3
# ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FAMS_TS4
# ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FAMS_TS5
# ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1
# Found a chain break before 179
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS1
# ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1
# Found a chain break before 119
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS2
# ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1
# Found a chain break before 176
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS3
# ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1
# naming current conformation FOLDpro_TS4
# ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1
# Found a chain break before 178
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS5
# ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL1
# ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1
Skipped atom 158, because occupancy 1 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 160, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 162, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
Skipped atom 164, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL2
# ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL3
# ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL4
# ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL5
# ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL1
# ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1
Skipped atom 158, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 160, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 162, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
Skipped atom 164, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL2
# ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL3
# ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL4
# ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL5
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1
# Found a chain break before 253
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS1
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1
# Found a chain break before 248
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS2
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1
# Found a chain break before 244
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS3
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1
# Found a chain break before 218
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS4
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1
# Found a chain break before 255
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS5
# ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1
# Found a chain break before 252
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS1
# ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS2
# ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS3
# ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1
# Found a chain break before 177
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS4
# ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1
# Found a chain break before 112
# copying to AlignedFragments data structure
# naming current conformation FUGMOD_TS5
# ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL1
# ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL2
# ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1
Skipped atom 158, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz
Skipped atom 160, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz
Skipped atom 162, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz
Skipped atom 164, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL3
# ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL4
# ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FUGUE_AL5
# ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1
# Found a chain break before 246
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS1
# ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1
# Found a chain break before 245
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS2
# ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1
# Found a chain break before 241
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS3
# ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1
# Found a chain break before 251
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS4
# ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1
# Found a chain break before 238
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS5
# ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1
# Found a chain break before 234
# copying to AlignedFragments data structure
# naming current conformation Frankenstein_TS1
# ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1
# Found a chain break before 206
# copying to AlignedFragments data structure
# naming current conformation Frankenstein_TS2
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1
# naming current conformation GeneSilicoMetaServer_TS1
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1
# Found a chain break before 179
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS2
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS3
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS4
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1
# Found a chain break before 216
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS5
# ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1
# naming current conformation HHpred1_TS1
# ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1
# Found a chain break before 67
# copying to AlignedFragments data structure
# naming current conformation HHpred2_TS1
# ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1
# Found a chain break before 222
# copying to AlignedFragments data structure
# naming current conformation HHpred3_TS1
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS1
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS2
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS3
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS4
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS5
# ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS1
# ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS2
# ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS3
# ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS4
# ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS5
# ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation MIG_FROST_AL1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1
# naming current conformation Ma-OPUS-server2_TS1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1
# Found a chain break before 179
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS2
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1
# Found a chain break before 24
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS3
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1
# Found a chain break before 179
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS4
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1
# Found a chain break before 140
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server2_TS5
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1
# Found a chain break before 122
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS1
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1
# Found a chain break before 183
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS2
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1
# Found a chain break before 24
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS3
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1
# Found a chain break before 179
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS4
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1
# Found a chain break before 182
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS5
# ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1
# Found a chain break before 246
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS1
# ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1
# Found a chain break before 254
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS2
# ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1
# Found a chain break before 241
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS3
# ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1
# Found a chain break before 220
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS4
# ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1
# Found a chain break before 243
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS5
# ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation NN_PUT_lab_TS1
# ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation POMYSL_TS1
# ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation POMYSL_TS2
# ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation POMYSL_TS3
# ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation POMYSL_TS4
# ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation POMYSL_TS5
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1
# Found a chain break before 214
# copying to AlignedFragments data structure
# naming current conformation PROTINFO-AB_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1
# Found a chain break before 214
# copying to AlignedFragments data structure
# naming current conformation PROTINFO-AB_TS2
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS3
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS4
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS5
# ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1
# Found a chain break before 216
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS1
# ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1
# Found a chain break before 215
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS2
# ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1
# Found a chain break before 242
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS3
# ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1
# Found a chain break before 242
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS4
# ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1
# Found a chain break before 203
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS5
# ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS1
# ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS2
# ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1
# Found a chain break before 240
# copying to AlignedFragments data structure
# naming current conformation Pcons6_TS3
# ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS4
# ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS5
# ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Phyre-1_TS1
# ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Phyre-2_TS1
# ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Phyre-2_TS2
# ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Phyre-2_TS3
# ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS4
# ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS5
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1
# Found a chain break before 245
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS1
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS2
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1
# Found a chain break before 242
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS3
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1
# Found a chain break before 245
# copying to AlignedFragments data structure
# naming current conformation Pmodeller6_TS4
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS5
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1
# Found a chain break before 88
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS1
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1
# Found a chain break before 101
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS2
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1
# Found a chain break before 220
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS3
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1
# Found a chain break before 179
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS4
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1
# Found a chain break before 179
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS5
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1
# Found a chain break before 219
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS1
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1
# Found a chain break before 205
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS2
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1
# Found a chain break before 219
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS3
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1
# Found a chain break before 254
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS4
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1
# Found a chain break before 253
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS5
# ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1
# Found a chain break before 177
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS1
# ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1
# naming current conformation RAPTOR_TS2
# ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1
# Found a chain break before 101
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS3
# ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1
# naming current conformation RAPTOR_TS4
# ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1
# Found a chain break before 141
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS5
# ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1
# Found a chain break before 245
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS1
# ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1
# Found a chain break before 241
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS2
# ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1
# Found a chain break before 242
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS3
# ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1
# Found a chain break before 179
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS4
# ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1
# Found a chain break before 245
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS5
# ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1
# Found a chain break before 206
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS1
# ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1
# Found a chain break before 216
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS2
# ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1
# Found a chain break before 203
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS3
# ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1
# Found a chain break before 179
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS4
# ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1
# Found a chain break before 179
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS5
# ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1
Skipped atom 45, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 46, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 47, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 48, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 265, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 267, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 585, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 586, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 587, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 588, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 605, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 606, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 607, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 608, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 621, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 622, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 623, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 624, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 681, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 682, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 683, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 684, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 713, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 714, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 715, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 716, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 777, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 778, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 779, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 780, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 865, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 866, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 867, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
Skipped atom 868, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL1.pdb.gz
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL1
# ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL2
# ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL3
# ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL4
# ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL5
# ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL1
# ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL2
# ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL3
# ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL4
# ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL5
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1
# Found a chain break before 237
# copying to AlignedFragments data structure
# naming current conformation SAM_T06_server_TS1
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS2
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS3
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS4
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS5
# ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1
# Found a chain break before 69
# copying to AlignedFragments data structure
# naming current conformation SP3_TS1
# ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1
# Found a chain break before 175
# copying to AlignedFragments data structure
# naming current conformation SP3_TS2
# ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1
# Found a chain break before 71
# copying to AlignedFragments data structure
# naming current conformation SP3_TS3
# ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1
# Found a chain break before 95
# copying to AlignedFragments data structure
# naming current conformation SP3_TS4
# ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1
# Found a chain break before 179
# copying to AlignedFragments data structure
# naming current conformation SP3_TS5
# ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1
# Found a chain break before 175
# copying to AlignedFragments data structure
# naming current conformation SP4_TS1
# ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1
# Found a chain break before 175
# copying to AlignedFragments data structure
# naming current conformation SP4_TS2
# ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1
# Found a chain break before 179
# copying to AlignedFragments data structure
# naming current conformation SP4_TS3
# ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1
# Found a chain break before 177
# copying to AlignedFragments data structure
# naming current conformation SP4_TS4
# ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1
# Found a chain break before 219
# copying to AlignedFragments data structure
# naming current conformation SP4_TS5
# ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1
# Found a chain break before 176
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS1
# ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1
# Found a chain break before 177
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS2
# ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1
# Found a chain break before 218
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS3
# ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1
# Found a chain break before 182
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS4
# ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1
# naming current conformation SPARKS2_TS5
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS1
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS2
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS3
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS4
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS5
# ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1
WARNING: atoms too close: (T0338)P110.CA and (T0338)L120.CA only 0.000 apart, marking (T0338)L120.CA as missing
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation UNI-EID_expm_TS1
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL1
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL2
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL3
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL4
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL5
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1
# Found a chain break before 183
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS1
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1
# Found a chain break before 221
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS2
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1
# Found a chain break before 208
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS3
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1
# Found a chain break before 222
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS4
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1
# Found a chain break before 115
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS5
# ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1
# Found a chain break before 254
# copying to AlignedFragments data structure
# naming current conformation beautshot_TS1
# ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation beautshotbase_TS1
# ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL1
# ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL2
# ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL3
# ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL4
# ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1
Skipped atom 158, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 160, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 162, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
Skipped atom 164, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL5.pdb.gz
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL5
# ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation gtg_AL1
# ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation gtg_AL2
# ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation gtg_AL3
# ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation gtg_AL4
# ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation gtg_AL5
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1
# Found a chain break before 220
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1
# Found a chain break before 199
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1
# Found a chain break before 199
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1
# Found a chain break before 199
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1
# Found a chain break before 199
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.2_TS5
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1
WARNING: atoms too close: (T0338)E204.O and (T0338)I205.N only 0.000 apart, marking (T0338)I205.N as missing
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1
# Found a chain break before 253
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1
# Found a chain break before 255
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1
# Found a chain break before 250
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS5
# ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS1
# ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS2
# ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS3
# ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS4
# ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS5
# ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1
# naming current conformation keasar-server_TS1
# ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1
# naming current conformation keasar-server_TS2
# ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1
# naming current conformation keasar-server_TS3
# ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1
# Found a chain break before 106
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS4
# ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1
# naming current conformation keasar-server_TS5
# ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation mGen-3D_TS1
# ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS1
# ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS2
# ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS3
# ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS4
# ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS5
# ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1
WARNING: atoms too close: (T0338)Q90.N and (T0338)A91.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)A91.CA only 0.000 apart, marking (T0338)A91.CA as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)A91.CB only 0.000 apart, marking (T0338)A91.CB as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)A91.O only 0.000 apart, marking (T0338)A91.O as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)A91.C only 0.000 apart, marking (T0338)A91.C as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)R92.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)R92.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)R92.CA only 0.000 apart, marking (T0338)R92.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)R92.CA only 0.000 apart, marking (T0338)R92.CA as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)R92.CB only 0.000 apart, marking (T0338)R92.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)R92.CB only 0.000 apart, marking (T0338)R92.CB as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)R92.CG only 0.000 apart, marking (T0338)R92.CG as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)R92.O only 0.000 apart, marking (T0338)R92.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)R92.O only 0.000 apart, marking (T0338)R92.O as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)R92.C only 0.000 apart, marking (T0338)R92.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)R92.C only 0.000 apart, marking (T0338)R92.C as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)K93.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)K93.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)K93.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)K93.CA only 0.000 apart, marking (T0338)K93.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)K93.CA only 0.000 apart, marking (T0338)K93.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)K93.CA only 0.000 apart, marking (T0338)K93.CA as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)K93.CB only 0.000 apart, marking (T0338)K93.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)K93.CB only 0.000 apart, marking (T0338)K93.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)K93.CB only 0.000 apart, marking (T0338)K93.CB as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)K93.CG only 0.000 apart, marking (T0338)K93.CG as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)K93.CG only 0.000 apart, marking (T0338)K93.CG as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)K93.O only 0.000 apart, marking (T0338)K93.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)K93.O only 0.000 apart, marking (T0338)K93.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)K93.O only 0.000 apart, marking (T0338)K93.O as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)K93.C only 0.000 apart, marking (T0338)K93.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)K93.C only 0.000 apart, marking (T0338)K93.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)K93.C only 0.000 apart, marking (T0338)K93.C as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)L94.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)L94.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)L94.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)L94.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)L94.CA only 0.000 apart, marking (T0338)L94.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)L94.CA only 0.000 apart, marking (T0338)L94.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)L94.CA only 0.000 apart, marking (T0338)L94.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)L94.CA only 0.000 apart, marking (T0338)L94.CA as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)L94.CB only 0.000 apart, marking (T0338)L94.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)L94.CB only 0.000 apart, marking (T0338)L94.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)L94.CB only 0.000 apart, marking (T0338)L94.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)L94.CB only 0.000 apart, marking (T0338)L94.CB as missing
WARNING: atoms too close: (T0338)K93.CG and (T0338)L94.CG only 0.000 apart, marking (T0338)L94.CG as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)L94.CG only 0.000 apart, marking (T0338)L94.CG as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)L94.CG only 0.000 apart, marking (T0338)L94.CG as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)L94.O only 0.000 apart, marking (T0338)L94.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)L94.O only 0.000 apart, marking (T0338)L94.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)L94.O only 0.000 apart, marking (T0338)L94.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)L94.O only 0.000 apart, marking (T0338)L94.O as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)L94.C only 0.000 apart, marking (T0338)L94.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)L94.C only 0.000 apart, marking (T0338)L94.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)L94.C only 0.000 apart, marking (T0338)L94.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)L94.C only 0.000 apart, marking (T0338)L94.C as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)E95.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)E95.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)E95.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)E95.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)E95.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)E95.CA only 0.000 apart, marking (T0338)E95.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)E95.CA only 0.000 apart, marking (T0338)E95.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)E95.CA only 0.000 apart, marking (T0338)E95.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)E95.CA only 0.000 apart, marking (T0338)E95.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)E95.CA only 0.000 apart, marking (T0338)E95.CA as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)E95.CB only 0.000 apart, marking (T0338)E95.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)E95.CB only 0.000 apart, marking (T0338)E95.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)E95.CB only 0.000 apart, marking (T0338)E95.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)E95.CB only 0.000 apart, marking (T0338)E95.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)E95.CB only 0.000 apart, marking (T0338)E95.CB as missing
WARNING: atoms too close: (T0338)L94.CG and (T0338)E95.CG only 0.000 apart, marking (T0338)E95.CG as missing
WARNING: atoms too close: (T0338)K93.CG and (T0338)E95.CG only 0.000 apart, marking (T0338)E95.CG as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)E95.CG only 0.000 apart, marking (T0338)E95.CG as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)E95.CG only 0.000 apart, marking (T0338)E95.CG as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)E95.O only 0.000 apart, marking (T0338)E95.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)E95.O only 0.000 apart, marking (T0338)E95.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)E95.O only 0.000 apart, marking (T0338)E95.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)E95.O only 0.000 apart, marking (T0338)E95.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)E95.O only 0.000 apart, marking (T0338)E95.O as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)E95.C only 0.000 apart, marking (T0338)E95.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)E95.C only 0.000 apart, marking (T0338)E95.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)E95.C only 0.000 apart, marking (T0338)E95.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)E95.C only 0.000 apart, marking (T0338)E95.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)E95.C only 0.000 apart, marking (T0338)E95.C as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)H96.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)H96.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)H96.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)H96.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)H96.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)H96.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)H96.CA only 0.000 apart, marking (T0338)H96.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)H96.CA only 0.000 apart, marking (T0338)H96.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)H96.CA only 0.000 apart, marking (T0338)H96.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)H96.CA only 0.000 apart, marking (T0338)H96.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)H96.CA only 0.000 apart, marking (T0338)H96.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)H96.CA only 0.000 apart, marking (T0338)H96.CA as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)H96.CB only 0.000 apart, marking (T0338)H96.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)H96.CB only 0.000 apart, marking (T0338)H96.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)H96.CB only 0.000 apart, marking (T0338)H96.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)H96.CB only 0.000 apart, marking (T0338)H96.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)H96.CB only 0.000 apart, marking (T0338)H96.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)H96.CB only 0.000 apart, marking (T0338)H96.CB as missing
WARNING: atoms too close: (T0338)E95.CG and (T0338)H96.CG only 0.000 apart, marking (T0338)H96.CG as missing
WARNING: atoms too close: (T0338)L94.CG and (T0338)H96.CG only 0.000 apart, marking (T0338)H96.CG as missing
WARNING: atoms too close: (T0338)K93.CG and (T0338)H96.CG only 0.000 apart, marking (T0338)H96.CG as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)H96.CG only 0.000 apart, marking (T0338)H96.CG as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)H96.CG only 0.000 apart, marking (T0338)H96.CG as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)H96.O only 0.000 apart, marking (T0338)H96.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)H96.O only 0.000 apart, marking (T0338)H96.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)H96.O only 0.000 apart, marking (T0338)H96.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)H96.O only 0.000 apart, marking (T0338)H96.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)H96.O only 0.000 apart, marking (T0338)H96.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)H96.O only 0.000 apart, marking (T0338)H96.O as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)H96.C only 0.000 apart, marking (T0338)H96.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)H96.C only 0.000 apart, marking (T0338)H96.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)H96.C only 0.000 apart, marking (T0338)H96.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)H96.C only 0.000 apart, marking (T0338)H96.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)H96.C only 0.000 apart, marking (T0338)H96.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)H96.C only 0.000 apart, marking (T0338)H96.C as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)V97.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)V97.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)V97.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)V97.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)V97.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)V97.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)V97.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)V97.CA only 0.000 apart, marking (T0338)V97.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)V97.CA only 0.000 apart, marking (T0338)V97.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)V97.CA only 0.000 apart, marking (T0338)V97.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)V97.CA only 0.000 apart, marking (T0338)V97.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)V97.CA only 0.000 apart, marking (T0338)V97.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)V97.CA only 0.000 apart, marking (T0338)V97.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)V97.CA only 0.000 apart, marking (T0338)V97.CA as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)V97.CB only 0.000 apart, marking (T0338)V97.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)V97.CB only 0.000 apart, marking (T0338)V97.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)V97.CB only 0.000 apart, marking (T0338)V97.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)V97.CB only 0.000 apart, marking (T0338)V97.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)V97.CB only 0.000 apart, marking (T0338)V97.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)V97.CB only 0.000 apart, marking (T0338)V97.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)V97.CB only 0.000 apart, marking (T0338)V97.CB as missing
WARNING: atoms too close: (T0338)H96.CG and (T0338)V97.CG1 only 0.000 apart, marking (T0338)V97.CG1 as missing
WARNING: atoms too close: (T0338)E95.CG and (T0338)V97.CG1 only 0.000 apart, marking (T0338)V97.CG1 as missing
WARNING: atoms too close: (T0338)L94.CG and (T0338)V97.CG1 only 0.000 apart, marking (T0338)V97.CG1 as missing
WARNING: atoms too close: (T0338)K93.CG and (T0338)V97.CG1 only 0.000 apart, marking (T0338)V97.CG1 as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)V97.CG1 only 0.000 apart, marking (T0338)V97.CG1 as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)V97.CG1 only 0.000 apart, marking (T0338)V97.CG1 as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)V97.O only 0.000 apart, marking (T0338)V97.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)V97.O only 0.000 apart, marking (T0338)V97.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)V97.O only 0.000 apart, marking (T0338)V97.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)V97.O only 0.000 apart, marking (T0338)V97.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)V97.O only 0.000 apart, marking (T0338)V97.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)V97.O only 0.000 apart, marking (T0338)V97.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)V97.O only 0.000 apart, marking (T0338)V97.O as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)V97.C only 0.000 apart, marking (T0338)V97.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)V97.C only 0.000 apart, marking (T0338)V97.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)V97.C only 0.000 apart, marking (T0338)V97.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)V97.C only 0.000 apart, marking (T0338)V97.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)V97.C only 0.000 apart, marking (T0338)V97.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)V97.C only 0.000 apart, marking (T0338)V97.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)V97.C only 0.000 apart, marking (T0338)V97.C as missing
WARNING: atoms too close: (T0338)V97.N and (T0338)I98.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)I98.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)I98.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)I98.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)I98.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)I98.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)I98.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)I98.N only 0.000 apart, marking (T0338)I98.N as missing
WARNING: atoms too close: (T0338)V97.CA and (T0338)I98.CA only 0.000 apart, marking (T0338)I98.CA as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)I98.CA only 0.000 apart, marking (T0338)I98.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)I98.CA only 0.000 apart, marking (T0338)I98.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)I98.CA only 0.000 apart, marking (T0338)I98.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)I98.CA only 0.000 apart, marking (T0338)I98.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)I98.CA only 0.000 apart, marking (T0338)I98.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)I98.CA only 0.000 apart, marking (T0338)I98.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)I98.CA only 0.000 apart, marking (T0338)I98.CA as missing
WARNING: atoms too close: (T0338)V97.CB and (T0338)I98.CB only 0.000 apart, marking (T0338)I98.CB as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)I98.CB only 0.000 apart, marking (T0338)I98.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)I98.CB only 0.000 apart, marking (T0338)I98.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)I98.CB only 0.000 apart, marking (T0338)I98.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)I98.CB only 0.000 apart, marking (T0338)I98.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)I98.CB only 0.000 apart, marking (T0338)I98.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)I98.CB only 0.000 apart, marking (T0338)I98.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)I98.CB only 0.000 apart, marking (T0338)I98.CB as missing
WARNING: atoms too close: (T0338)V97.CG1 and (T0338)I98.CG1 only 0.000 apart, marking (T0338)I98.CG1 as missing
WARNING: atoms too close: (T0338)H96.CG and (T0338)I98.CG1 only 0.000 apart, marking (T0338)I98.CG1 as missing
WARNING: atoms too close: (T0338)E95.CG and (T0338)I98.CG1 only 0.000 apart, marking (T0338)I98.CG1 as missing
WARNING: atoms too close: (T0338)L94.CG and (T0338)I98.CG1 only 0.000 apart, marking (T0338)I98.CG1 as missing
WARNING: atoms too close: (T0338)K93.CG and (T0338)I98.CG1 only 0.000 apart, marking (T0338)I98.CG1 as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)I98.CG1 only 0.000 apart, marking (T0338)I98.CG1 as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)I98.CG1 only 0.000 apart, marking (T0338)I98.CG1 as missing
WARNING: atoms too close: (T0338)V97.O and (T0338)I98.O only 0.000 apart, marking (T0338)I98.O as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)I98.O only 0.000 apart, marking (T0338)I98.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)I98.O only 0.000 apart, marking (T0338)I98.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)I98.O only 0.000 apart, marking (T0338)I98.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)I98.O only 0.000 apart, marking (T0338)I98.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)I98.O only 0.000 apart, marking (T0338)I98.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)I98.O only 0.000 apart, marking (T0338)I98.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)I98.O only 0.000 apart, marking (T0338)I98.O as missing
WARNING: atoms too close: (T0338)V97.C and (T0338)I98.C only 0.000 apart, marking (T0338)I98.C as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)I98.C only 0.000 apart, marking (T0338)I98.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)I98.C only 0.000 apart, marking (T0338)I98.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)I98.C only 0.000 apart, marking (T0338)I98.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)I98.C only 0.000 apart, marking (T0338)I98.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)I98.C only 0.000 apart, marking (T0338)I98.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)I98.C only 0.000 apart, marking (T0338)I98.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)I98.C only 0.000 apart, marking (T0338)I98.C as missing
WARNING: atoms too close: (T0338)I98.N and (T0338)K99.N only 0.000 apart, marking (T0338)I98.N as missing
WARNING: atoms too close: (T0338)V97.N and (T0338)K99.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)K99.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)K99.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)K99.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)K99.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)K99.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)K99.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)K99.N only 0.000 apart, marking (T0338)K99.N as missing
WARNING: atoms too close: (T0338)I98.CA and (T0338)K99.CA only 0.000 apart, marking (T0338)K99.CA as missing
WARNING: atoms too close: (T0338)V97.CA and (T0338)K99.CA only 0.000 apart, marking (T0338)K99.CA as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)K99.CA only 0.000 apart, marking (T0338)K99.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)K99.CA only 0.000 apart, marking (T0338)K99.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)K99.CA only 0.000 apart, marking (T0338)K99.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)K99.CA only 0.000 apart, marking (T0338)K99.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)K99.CA only 0.000 apart, marking (T0338)K99.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)K99.CA only 0.000 apart, marking (T0338)K99.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)K99.CA only 0.000 apart, marking (T0338)K99.CA as missing
WARNING: atoms too close: (T0338)I98.CB and (T0338)K99.CB only 0.000 apart, marking (T0338)K99.CB as missing
WARNING: atoms too close: (T0338)V97.CB and (T0338)K99.CB only 0.000 apart, marking (T0338)K99.CB as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)K99.CB only 0.000 apart, marking (T0338)K99.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)K99.CB only 0.000 apart, marking (T0338)K99.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)K99.CB only 0.000 apart, marking (T0338)K99.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)K99.CB only 0.000 apart, marking (T0338)K99.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)K99.CB only 0.000 apart, marking (T0338)K99.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)K99.CB only 0.000 apart, marking (T0338)K99.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)K99.CB only 0.000 apart, marking (T0338)K99.CB as missing
WARNING: atoms too close: (T0338)I98.CG1 and (T0338)K99.CG only 0.000 apart, marking (T0338)K99.CG as missing
WARNING: atoms too close: (T0338)V97.CG1 and (T0338)K99.CG only 0.000 apart, marking (T0338)K99.CG as missing
WARNING: atoms too close: (T0338)H96.CG and (T0338)K99.CG only 0.000 apart, marking (T0338)K99.CG as missing
WARNING: atoms too close: (T0338)E95.CG and (T0338)K99.CG only 0.000 apart, marking (T0338)K99.CG as missing
WARNING: atoms too close: (T0338)L94.CG and (T0338)K99.CG only 0.000 apart, marking (T0338)K99.CG as missing
WARNING: atoms too close: (T0338)K93.CG and (T0338)K99.CG only 0.000 apart, marking (T0338)K99.CG as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)K99.CG only 0.000 apart, marking (T0338)K99.CG as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)K99.CG only 0.000 apart, marking (T0338)K99.CG as missing
WARNING: atoms too close: (T0338)I98.O and (T0338)K99.O only 0.000 apart, marking (T0338)K99.O as missing
WARNING: atoms too close: (T0338)V97.O and (T0338)K99.O only 0.000 apart, marking (T0338)K99.O as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)K99.O only 0.000 apart, marking (T0338)K99.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)K99.O only 0.000 apart, marking (T0338)K99.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)K99.O only 0.000 apart, marking (T0338)K99.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)K99.O only 0.000 apart, marking (T0338)K99.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)K99.O only 0.000 apart, marking (T0338)K99.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)K99.O only 0.000 apart, marking (T0338)K99.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)K99.O only 0.000 apart, marking (T0338)K99.O as missing
WARNING: atoms too close: (T0338)I98.C and (T0338)K99.C only 0.000 apart, marking (T0338)K99.C as missing
WARNING: atoms too close: (T0338)V97.C and (T0338)K99.C only 0.000 apart, marking (T0338)K99.C as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)K99.C only 0.000 apart, marking (T0338)K99.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)K99.C only 0.000 apart, marking (T0338)K99.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)K99.C only 0.000 apart, marking (T0338)K99.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)K99.C only 0.000 apart, marking (T0338)K99.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)K99.C only 0.000 apart, marking (T0338)K99.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)K99.C only 0.000 apart, marking (T0338)K99.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)K99.C only 0.000 apart, marking (T0338)K99.C as missing
WARNING: atoms too close: (T0338)K99.N and (T0338)V100.N only 0.000 apart, marking (T0338)K99.N as missing
WARNING: atoms too close: (T0338)I98.N and (T0338)V100.N only 0.000 apart, marking (T0338)I98.N as missing
WARNING: atoms too close: (T0338)V97.N and (T0338)V100.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)V100.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)V100.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)V100.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)V100.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)V100.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)V100.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)V100.N only 0.000 apart, marking (T0338)V100.N as missing
WARNING: atoms too close: (T0338)K99.CA and (T0338)V100.CA only 0.000 apart, marking (T0338)V100.CA as missing
WARNING: atoms too close: (T0338)I98.CA and (T0338)V100.CA only 0.000 apart, marking (T0338)V100.CA as missing
WARNING: atoms too close: (T0338)V97.CA and (T0338)V100.CA only 0.000 apart, marking (T0338)V100.CA as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)V100.CA only 0.000 apart, marking (T0338)V100.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)V100.CA only 0.000 apart, marking (T0338)V100.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)V100.CA only 0.000 apart, marking (T0338)V100.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)V100.CA only 0.000 apart, marking (T0338)V100.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)V100.CA only 0.000 apart, marking (T0338)V100.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)V100.CA only 0.000 apart, marking (T0338)V100.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)V100.CA only 0.000 apart, marking (T0338)V100.CA as missing
WARNING: atoms too close: (T0338)K99.CB and (T0338)V100.CB only 0.000 apart, marking (T0338)V100.CB as missing
WARNING: atoms too close: (T0338)I98.CB and (T0338)V100.CB only 0.000 apart, marking (T0338)V100.CB as missing
WARNING: atoms too close: (T0338)V97.CB and (T0338)V100.CB only 0.000 apart, marking (T0338)V100.CB as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)V100.CB only 0.000 apart, marking (T0338)V100.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)V100.CB only 0.000 apart, marking (T0338)V100.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)V100.CB only 0.000 apart, marking (T0338)V100.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)V100.CB only 0.000 apart, marking (T0338)V100.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)V100.CB only 0.000 apart, marking (T0338)V100.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)V100.CB only 0.000 apart, marking (T0338)V100.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)V100.CB only 0.000 apart, marking (T0338)V100.CB as missing
WARNING: atoms too close: (T0338)K99.CG and (T0338)V100.CG1 only 0.000 apart, marking (T0338)V100.CG1 as missing
WARNING: atoms too close: (T0338)I98.CG1 and (T0338)V100.CG1 only 0.000 apart, marking (T0338)V100.CG1 as missing
WARNING: atoms too close: (T0338)V97.CG1 and (T0338)V100.CG1 only 0.000 apart, marking (T0338)V100.CG1 as missing
WARNING: atoms too close: (T0338)H96.CG and (T0338)V100.CG1 only 0.000 apart, marking (T0338)V100.CG1 as missing
WARNING: atoms too close: (T0338)E95.CG and (T0338)V100.CG1 only 0.000 apart, marking (T0338)V100.CG1 as missing
WARNING: atoms too close: (T0338)L94.CG and (T0338)V100.CG1 only 0.000 apart, marking (T0338)V100.CG1 as missing
WARNING: atoms too close: (T0338)K93.CG and (T0338)V100.CG1 only 0.000 apart, marking (T0338)V100.CG1 as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)V100.CG1 only 0.000 apart, marking (T0338)V100.CG1 as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)V100.CG1 only 0.000 apart, marking (T0338)V100.CG1 as missing
WARNING: atoms too close: (T0338)K99.O and (T0338)V100.O only 0.000 apart, marking (T0338)V100.O as missing
WARNING: atoms too close: (T0338)I98.O and (T0338)V100.O only 0.000 apart, marking (T0338)V100.O as missing
WARNING: atoms too close: (T0338)V97.O and (T0338)V100.O only 0.000 apart, marking (T0338)V100.O as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)V100.O only 0.000 apart, marking (T0338)V100.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)V100.O only 0.000 apart, marking (T0338)V100.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)V100.O only 0.000 apart, marking (T0338)V100.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)V100.O only 0.000 apart, marking (T0338)V100.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)V100.O only 0.000 apart, marking (T0338)V100.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)V100.O only 0.000 apart, marking (T0338)V100.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)V100.O only 0.000 apart, marking (T0338)V100.O as missing
WARNING: atoms too close: (T0338)K99.C and (T0338)V100.C only 0.000 apart, marking (T0338)V100.C as missing
WARNING: atoms too close: (T0338)I98.C and (T0338)V100.C only 0.000 apart, marking (T0338)V100.C as missing
WARNING: atoms too close: (T0338)V97.C and (T0338)V100.C only 0.000 apart, marking (T0338)V100.C as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)V100.C only 0.000 apart, marking (T0338)V100.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)V100.C only 0.000 apart, marking (T0338)V100.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)V100.C only 0.000 apart, marking (T0338)V100.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)V100.C only 0.000 apart, marking (T0338)V100.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)V100.C only 0.000 apart, marking (T0338)V100.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)V100.C only 0.000 apart, marking (T0338)V100.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)V100.C only 0.000 apart, marking (T0338)V100.C as missing
WARNING: atoms too close: (T0338)V100.N and (T0338)A101.N only 0.000 apart, marking (T0338)V100.N as missing
WARNING: atoms too close: (T0338)K99.N and (T0338)A101.N only 0.000 apart, marking (T0338)K99.N as missing
WARNING: atoms too close: (T0338)I98.N and (T0338)A101.N only 0.000 apart, marking (T0338)I98.N as missing
WARNING: atoms too close: (T0338)V97.N and (T0338)A101.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)A101.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)A101.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)A101.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)A101.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)A101.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)A101.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)A101.N only 0.000 apart, marking (T0338)A101.N as missing
WARNING: atoms too close: (T0338)V100.CA and (T0338)A101.CA only 0.000 apart, marking (T0338)A101.CA as missing
WARNING: atoms too close: (T0338)K99.CA and (T0338)A101.CA only 0.000 apart, marking (T0338)A101.CA as missing
WARNING: atoms too close: (T0338)I98.CA and (T0338)A101.CA only 0.000 apart, marking (T0338)A101.CA as missing
WARNING: atoms too close: (T0338)V97.CA and (T0338)A101.CA only 0.000 apart, marking (T0338)A101.CA as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)A101.CA only 0.000 apart, marking (T0338)A101.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)A101.CA only 0.000 apart, marking (T0338)A101.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)A101.CA only 0.000 apart, marking (T0338)A101.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)A101.CA only 0.000 apart, marking (T0338)A101.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)A101.CA only 0.000 apart, marking (T0338)A101.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)A101.CA only 0.000 apart, marking (T0338)A101.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)A101.CA only 0.000 apart, marking (T0338)A101.CA as missing
WARNING: atoms too close: (T0338)V100.CB and (T0338)A101.CB only 0.000 apart, marking (T0338)A101.CB as missing
WARNING: atoms too close: (T0338)K99.CB and (T0338)A101.CB only 0.000 apart, marking (T0338)A101.CB as missing
WARNING: atoms too close: (T0338)I98.CB and (T0338)A101.CB only 0.000 apart, marking (T0338)A101.CB as missing
WARNING: atoms too close: (T0338)V97.CB and (T0338)A101.CB only 0.000 apart, marking (T0338)A101.CB as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)A101.CB only 0.000 apart, marking (T0338)A101.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)A101.CB only 0.000 apart, marking (T0338)A101.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)A101.CB only 0.000 apart, marking (T0338)A101.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)A101.CB only 0.000 apart, marking (T0338)A101.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)A101.CB only 0.000 apart, marking (T0338)A101.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)A101.CB only 0.000 apart, marking (T0338)A101.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)A101.CB only 0.000 apart, marking (T0338)A101.CB as missing
WARNING: atoms too close: (T0338)V100.O and (T0338)A101.O only 0.000 apart, marking (T0338)A101.O as missing
WARNING: atoms too close: (T0338)K99.O and (T0338)A101.O only 0.000 apart, marking (T0338)A101.O as missing
WARNING: atoms too close: (T0338)I98.O and (T0338)A101.O only 0.000 apart, marking (T0338)A101.O as missing
WARNING: atoms too close: (T0338)V97.O and (T0338)A101.O only 0.000 apart, marking (T0338)A101.O as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)A101.O only 0.000 apart, marking (T0338)A101.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)A101.O only 0.000 apart, marking (T0338)A101.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)A101.O only 0.000 apart, marking (T0338)A101.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)A101.O only 0.000 apart, marking (T0338)A101.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)A101.O only 0.000 apart, marking (T0338)A101.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)A101.O only 0.000 apart, marking (T0338)A101.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)A101.O only 0.000 apart, marking (T0338)A101.O as missing
WARNING: atoms too close: (T0338)V100.C and (T0338)A101.C only 0.000 apart, marking (T0338)A101.C as missing
WARNING: atoms too close: (T0338)K99.C and (T0338)A101.C only 0.000 apart, marking (T0338)A101.C as missing
WARNING: atoms too close: (T0338)I98.C and (T0338)A101.C only 0.000 apart, marking (T0338)A101.C as missing
WARNING: atoms too close: (T0338)V97.C and (T0338)A101.C only 0.000 apart, marking (T0338)A101.C as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)A101.C only 0.000 apart, marking (T0338)A101.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)A101.C only 0.000 apart, marking (T0338)A101.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)A101.C only 0.000 apart, marking (T0338)A101.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)A101.C only 0.000 apart, marking (T0338)A101.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)A101.C only 0.000 apart, marking (T0338)A101.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)A101.C only 0.000 apart, marking (T0338)A101.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)A101.C only 0.000 apart, marking (T0338)A101.C as missing
WARNING: atoms too close: (T0338)A101.N and (T0338)H102.N only 0.000 apart, marking (T0338)A101.N as missing
WARNING: atoms too close: (T0338)V100.N and (T0338)H102.N only 0.000 apart, marking (T0338)V100.N as missing
WARNING: atoms too close: (T0338)K99.N and (T0338)H102.N only 0.000 apart, marking (T0338)K99.N as missing
WARNING: atoms too close: (T0338)I98.N and (T0338)H102.N only 0.000 apart, marking (T0338)I98.N as missing
WARNING: atoms too close: (T0338)V97.N and (T0338)H102.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)H102.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)H102.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)H102.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)H102.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)H102.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)H102.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)H102.N only 0.000 apart, marking (T0338)H102.N as missing
WARNING: atoms too close: (T0338)A101.CA and (T0338)H102.CA only 0.000 apart, marking (T0338)H102.CA as missing
WARNING: atoms too close: (T0338)V100.CA and (T0338)H102.CA only 0.000 apart, marking (T0338)H102.CA as missing
WARNING: atoms too close: (T0338)K99.CA and (T0338)H102.CA only 0.000 apart, marking (T0338)H102.CA as missing
WARNING: atoms too close: (T0338)I98.CA and (T0338)H102.CA only 0.000 apart, marking (T0338)H102.CA as missing
WARNING: atoms too close: (T0338)V97.CA and (T0338)H102.CA only 0.000 apart, marking (T0338)H102.CA as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)H102.CA only 0.000 apart, marking (T0338)H102.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)H102.CA only 0.000 apart, marking (T0338)H102.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)H102.CA only 0.000 apart, marking (T0338)H102.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)H102.CA only 0.000 apart, marking (T0338)H102.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)H102.CA only 0.000 apart, marking (T0338)H102.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)H102.CA only 0.000 apart, marking (T0338)H102.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)H102.CA only 0.000 apart, marking (T0338)H102.CA as missing
WARNING: atoms too close: (T0338)A101.CB and (T0338)H102.CB only 0.000 apart, marking (T0338)H102.CB as missing
WARNING: atoms too close: (T0338)V100.CB and (T0338)H102.CB only 0.000 apart, marking (T0338)H102.CB as missing
WARNING: atoms too close: (T0338)K99.CB and (T0338)H102.CB only 0.000 apart, marking (T0338)H102.CB as missing
WARNING: atoms too close: (T0338)I98.CB and (T0338)H102.CB only 0.000 apart, marking (T0338)H102.CB as missing
WARNING: atoms too close: (T0338)V97.CB and (T0338)H102.CB only 0.000 apart, marking (T0338)H102.CB as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)H102.CB only 0.000 apart, marking (T0338)H102.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)H102.CB only 0.000 apart, marking (T0338)H102.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)H102.CB only 0.000 apart, marking (T0338)H102.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)H102.CB only 0.000 apart, marking (T0338)H102.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)H102.CB only 0.000 apart, marking (T0338)H102.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)H102.CB only 0.000 apart, marking (T0338)H102.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)H102.CB only 0.000 apart, marking (T0338)H102.CB as missing
WARNING: atoms too close: (T0338)V100.CG1 and (T0338)H102.CG only 0.000 apart, marking (T0338)H102.CG as missing
WARNING: atoms too close: (T0338)K99.CG and (T0338)H102.CG only 0.000 apart, marking (T0338)H102.CG as missing
WARNING: atoms too close: (T0338)I98.CG1 and (T0338)H102.CG only 0.000 apart, marking (T0338)H102.CG as missing
WARNING: atoms too close: (T0338)V97.CG1 and (T0338)H102.CG only 0.000 apart, marking (T0338)H102.CG as missing
WARNING: atoms too close: (T0338)H96.CG and (T0338)H102.CG only 0.000 apart, marking (T0338)H102.CG as missing
WARNING: atoms too close: (T0338)E95.CG and (T0338)H102.CG only 0.000 apart, marking (T0338)H102.CG as missing
WARNING: atoms too close: (T0338)L94.CG and (T0338)H102.CG only 0.000 apart, marking (T0338)H102.CG as missing
WARNING: atoms too close: (T0338)K93.CG and (T0338)H102.CG only 0.000 apart, marking (T0338)H102.CG as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)H102.CG only 0.000 apart, marking (T0338)H102.CG as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)H102.CG only 0.000 apart, marking (T0338)H102.CG as missing
WARNING: atoms too close: (T0338)A101.O and (T0338)H102.O only 0.000 apart, marking (T0338)H102.O as missing
WARNING: atoms too close: (T0338)V100.O and (T0338)H102.O only 0.000 apart, marking (T0338)H102.O as missing
WARNING: atoms too close: (T0338)K99.O and (T0338)H102.O only 0.000 apart, marking (T0338)H102.O as missing
WARNING: atoms too close: (T0338)I98.O and (T0338)H102.O only 0.000 apart, marking (T0338)H102.O as missing
WARNING: atoms too close: (T0338)V97.O and (T0338)H102.O only 0.000 apart, marking (T0338)H102.O as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)H102.O only 0.000 apart, marking (T0338)H102.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)H102.O only 0.000 apart, marking (T0338)H102.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)H102.O only 0.000 apart, marking (T0338)H102.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)H102.O only 0.000 apart, marking (T0338)H102.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)H102.O only 0.000 apart, marking (T0338)H102.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)H102.O only 0.000 apart, marking (T0338)H102.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)H102.O only 0.000 apart, marking (T0338)H102.O as missing
WARNING: atoms too close: (T0338)A101.C and (T0338)H102.C only 0.000 apart, marking (T0338)H102.C as missing
WARNING: atoms too close: (T0338)V100.C and (T0338)H102.C only 0.000 apart, marking (T0338)H102.C as missing
WARNING: atoms too close: (T0338)K99.C and (T0338)H102.C only 0.000 apart, marking (T0338)H102.C as missing
WARNING: atoms too close: (T0338)I98.C and (T0338)H102.C only 0.000 apart, marking (T0338)H102.C as missing
WARNING: atoms too close: (T0338)V97.C and (T0338)H102.C only 0.000 apart, marking (T0338)H102.C as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)H102.C only 0.000 apart, marking (T0338)H102.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)H102.C only 0.000 apart, marking (T0338)H102.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)H102.C only 0.000 apart, marking (T0338)H102.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)H102.C only 0.000 apart, marking (T0338)H102.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)H102.C only 0.000 apart, marking (T0338)H102.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)H102.C only 0.000 apart, marking (T0338)H102.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)H102.C only 0.000 apart, marking (T0338)H102.C as missing
WARNING: atoms too close: (T0338)H102.N and (T0338)A103.N only 0.000 apart, marking (T0338)H102.N as missing
WARNING: atoms too close: (T0338)A101.N and (T0338)A103.N only 0.000 apart, marking (T0338)A101.N as missing
WARNING: atoms too close: (T0338)V100.N and (T0338)A103.N only 0.000 apart, marking (T0338)V100.N as missing
WARNING: atoms too close: (T0338)K99.N and (T0338)A103.N only 0.000 apart, marking (T0338)K99.N as missing
WARNING: atoms too close: (T0338)I98.N and (T0338)A103.N only 0.000 apart, marking (T0338)I98.N as missing
WARNING: atoms too close: (T0338)V97.N and (T0338)A103.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)A103.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)A103.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)A103.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)A103.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)A103.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)A103.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)A103.N only 0.000 apart, marking (T0338)A103.N as missing
WARNING: atoms too close: (T0338)H102.CA and (T0338)A103.CA only 0.000 apart, marking (T0338)A103.CA as missing
WARNING: atoms too close: (T0338)A101.CA and (T0338)A103.CA only 0.000 apart, marking (T0338)A103.CA as missing
WARNING: atoms too close: (T0338)V100.CA and (T0338)A103.CA only 0.000 apart, marking (T0338)A103.CA as missing
WARNING: atoms too close: (T0338)K99.CA and (T0338)A103.CA only 0.000 apart, marking (T0338)A103.CA as missing
WARNING: atoms too close: (T0338)I98.CA and (T0338)A103.CA only 0.000 apart, marking (T0338)A103.CA as missing
WARNING: atoms too close: (T0338)V97.CA and (T0338)A103.CA only 0.000 apart, marking (T0338)A103.CA as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)A103.CA only 0.000 apart, marking (T0338)A103.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)A103.CA only 0.000 apart, marking (T0338)A103.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)A103.CA only 0.000 apart, marking (T0338)A103.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)A103.CA only 0.000 apart, marking (T0338)A103.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)A103.CA only 0.000 apart, marking (T0338)A103.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)A103.CA only 0.000 apart, marking (T0338)A103.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)A103.CA only 0.000 apart, marking (T0338)A103.CA as missing
WARNING: atoms too close: (T0338)H102.CB and (T0338)A103.CB only 0.000 apart, marking (T0338)A103.CB as missing
WARNING: atoms too close: (T0338)A101.CB and (T0338)A103.CB only 0.000 apart, marking (T0338)A103.CB as missing
WARNING: atoms too close: (T0338)V100.CB and (T0338)A103.CB only 0.000 apart, marking (T0338)A103.CB as missing
WARNING: atoms too close: (T0338)K99.CB and (T0338)A103.CB only 0.000 apart, marking (T0338)A103.CB as missing
WARNING: atoms too close: (T0338)I98.CB and (T0338)A103.CB only 0.000 apart, marking (T0338)A103.CB as missing
WARNING: atoms too close: (T0338)V97.CB and (T0338)A103.CB only 0.000 apart, marking (T0338)A103.CB as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)A103.CB only 0.000 apart, marking (T0338)A103.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)A103.CB only 0.000 apart, marking (T0338)A103.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)A103.CB only 0.000 apart, marking (T0338)A103.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)A103.CB only 0.000 apart, marking (T0338)A103.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)A103.CB only 0.000 apart, marking (T0338)A103.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)A103.CB only 0.000 apart, marking (T0338)A103.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)A103.CB only 0.000 apart, marking (T0338)A103.CB as missing
WARNING: atoms too close: (T0338)H102.O and (T0338)A103.O only 0.000 apart, marking (T0338)A103.O as missing
WARNING: atoms too close: (T0338)A101.O and (T0338)A103.O only 0.000 apart, marking (T0338)A103.O as missing
WARNING: atoms too close: (T0338)V100.O and (T0338)A103.O only 0.000 apart, marking (T0338)A103.O as missing
WARNING: atoms too close: (T0338)K99.O and (T0338)A103.O only 0.000 apart, marking (T0338)A103.O as missing
WARNING: atoms too close: (T0338)I98.O and (T0338)A103.O only 0.000 apart, marking (T0338)A103.O as missing
WARNING: atoms too close: (T0338)V97.O and (T0338)A103.O only 0.000 apart, marking (T0338)A103.O as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)A103.O only 0.000 apart, marking (T0338)A103.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)A103.O only 0.000 apart, marking (T0338)A103.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)A103.O only 0.000 apart, marking (T0338)A103.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)A103.O only 0.000 apart, marking (T0338)A103.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)A103.O only 0.000 apart, marking (T0338)A103.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)A103.O only 0.000 apart, marking (T0338)A103.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)A103.O only 0.000 apart, marking (T0338)A103.O as missing
WARNING: atoms too close: (T0338)H102.C and (T0338)A103.C only 0.000 apart, marking (T0338)A103.C as missing
WARNING: atoms too close: (T0338)A101.C and (T0338)A103.C only 0.000 apart, marking (T0338)A103.C as missing
WARNING: atoms too close: (T0338)V100.C and (T0338)A103.C only 0.000 apart, marking (T0338)A103.C as missing
WARNING: atoms too close: (T0338)K99.C and (T0338)A103.C only 0.000 apart, marking (T0338)A103.C as missing
WARNING: atoms too close: (T0338)I98.C and (T0338)A103.C only 0.000 apart, marking (T0338)A103.C as missing
WARNING: atoms too close: (T0338)V97.C and (T0338)A103.C only 0.000 apart, marking (T0338)A103.C as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)A103.C only 0.000 apart, marking (T0338)A103.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)A103.C only 0.000 apart, marking (T0338)A103.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)A103.C only 0.000 apart, marking (T0338)A103.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)A103.C only 0.000 apart, marking (T0338)A103.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)A103.C only 0.000 apart, marking (T0338)A103.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)A103.C only 0.000 apart, marking (T0338)A103.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)A103.C only 0.000 apart, marking (T0338)A103.C as missing
WARNING: atoms too close: (T0338)A103.N and (T0338)C104.N only 0.000 apart, marking (T0338)A103.N as missing
WARNING: atoms too close: (T0338)H102.N and (T0338)C104.N only 0.000 apart, marking (T0338)H102.N as missing
WARNING: atoms too close: (T0338)A101.N and (T0338)C104.N only 0.000 apart, marking (T0338)A101.N as missing
WARNING: atoms too close: (T0338)V100.N and (T0338)C104.N only 0.000 apart, marking (T0338)V100.N as missing
WARNING: atoms too close: (T0338)K99.N and (T0338)C104.N only 0.000 apart, marking (T0338)K99.N as missing
WARNING: atoms too close: (T0338)I98.N and (T0338)C104.N only 0.000 apart, marking (T0338)I98.N as missing
WARNING: atoms too close: (T0338)V97.N and (T0338)C104.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)C104.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)C104.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)C104.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)C104.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)C104.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)C104.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)C104.N only 0.000 apart, marking (T0338)C104.N as missing
WARNING: atoms too close: (T0338)A103.CA and (T0338)C104.CA only 0.000 apart, marking (T0338)C104.CA as missing
WARNING: atoms too close: (T0338)H102.CA and (T0338)C104.CA only 0.000 apart, marking (T0338)C104.CA as missing
WARNING: atoms too close: (T0338)A101.CA and (T0338)C104.CA only 0.000 apart, marking (T0338)C104.CA as missing
WARNING: atoms too close: (T0338)V100.CA and (T0338)C104.CA only 0.000 apart, marking (T0338)C104.CA as missing
WARNING: atoms too close: (T0338)K99.CA and (T0338)C104.CA only 0.000 apart, marking (T0338)C104.CA as missing
WARNING: atoms too close: (T0338)I98.CA and (T0338)C104.CA only 0.000 apart, marking (T0338)C104.CA as missing
WARNING: atoms too close: (T0338)V97.CA and (T0338)C104.CA only 0.000 apart, marking (T0338)C104.CA as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)C104.CA only 0.000 apart, marking (T0338)C104.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)C104.CA only 0.000 apart, marking (T0338)C104.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)C104.CA only 0.000 apart, marking (T0338)C104.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)C104.CA only 0.000 apart, marking (T0338)C104.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)C104.CA only 0.000 apart, marking (T0338)C104.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)C104.CA only 0.000 apart, marking (T0338)C104.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)C104.CA only 0.000 apart, marking (T0338)C104.CA as missing
WARNING: atoms too close: (T0338)A103.CB and (T0338)C104.CB only 0.000 apart, marking (T0338)C104.CB as missing
WARNING: atoms too close: (T0338)H102.CB and (T0338)C104.CB only 0.000 apart, marking (T0338)C104.CB as missing
WARNING: atoms too close: (T0338)A101.CB and (T0338)C104.CB only 0.000 apart, marking (T0338)C104.CB as missing
WARNING: atoms too close: (T0338)V100.CB and (T0338)C104.CB only 0.000 apart, marking (T0338)C104.CB as missing
WARNING: atoms too close: (T0338)K99.CB and (T0338)C104.CB only 0.000 apart, marking (T0338)C104.CB as missing
WARNING: atoms too close: (T0338)I98.CB and (T0338)C104.CB only 0.000 apart, marking (T0338)C104.CB as missing
WARNING: atoms too close: (T0338)V97.CB and (T0338)C104.CB only 0.000 apart, marking (T0338)C104.CB as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)C104.CB only 0.000 apart, marking (T0338)C104.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)C104.CB only 0.000 apart, marking (T0338)C104.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)C104.CB only 0.000 apart, marking (T0338)C104.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)C104.CB only 0.000 apart, marking (T0338)C104.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)C104.CB only 0.000 apart, marking (T0338)C104.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)C104.CB only 0.000 apart, marking (T0338)C104.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)C104.CB only 0.000 apart, marking (T0338)C104.CB as missing
WARNING: atoms too close: (T0338)A103.O and (T0338)C104.O only 0.000 apart, marking (T0338)C104.O as missing
WARNING: atoms too close: (T0338)H102.O and (T0338)C104.O only 0.000 apart, marking (T0338)C104.O as missing
WARNING: atoms too close: (T0338)A101.O and (T0338)C104.O only 0.000 apart, marking (T0338)C104.O as missing
WARNING: atoms too close: (T0338)V100.O and (T0338)C104.O only 0.000 apart, marking (T0338)C104.O as missing
WARNING: atoms too close: (T0338)K99.O and (T0338)C104.O only 0.000 apart, marking (T0338)C104.O as missing
WARNING: atoms too close: (T0338)I98.O and (T0338)C104.O only 0.000 apart, marking (T0338)C104.O as missing
WARNING: atoms too close: (T0338)V97.O and (T0338)C104.O only 0.000 apart, marking (T0338)C104.O as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)C104.O only 0.000 apart, marking (T0338)C104.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)C104.O only 0.000 apart, marking (T0338)C104.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)C104.O only 0.000 apart, marking (T0338)C104.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)C104.O only 0.000 apart, marking (T0338)C104.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)C104.O only 0.000 apart, marking (T0338)C104.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)C104.O only 0.000 apart, marking (T0338)C104.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)C104.O only 0.000 apart, marking (T0338)C104.O as missing
WARNING: atoms too close: (T0338)A103.C and (T0338)C104.C only 0.000 apart, marking (T0338)C104.C as missing
WARNING: atoms too close: (T0338)H102.C and (T0338)C104.C only 0.000 apart, marking (T0338)C104.C as missing
WARNING: atoms too close: (T0338)A101.C and (T0338)C104.C only 0.000 apart, marking (T0338)C104.C as missing
WARNING: atoms too close: (T0338)V100.C and (T0338)C104.C only 0.000 apart, marking (T0338)C104.C as missing
WARNING: atoms too close: (T0338)K99.C and (T0338)C104.C only 0.000 apart, marking (T0338)C104.C as missing
WARNING: atoms too close: (T0338)I98.C and (T0338)C104.C only 0.000 apart, marking (T0338)C104.C as missing
WARNING: atoms too close: (T0338)V97.C and (T0338)C104.C only 0.000 apart, marking (T0338)C104.C as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)C104.C only 0.000 apart, marking (T0338)C104.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)C104.C only 0.000 apart, marking (T0338)C104.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)C104.C only 0.000 apart, marking (T0338)C104.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)C104.C only 0.000 apart, marking (T0338)C104.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)C104.C only 0.000 apart, marking (T0338)C104.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)C104.C only 0.000 apart, marking (T0338)C104.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)C104.C only 0.000 apart, marking (T0338)C104.C as missing
WARNING: atoms too close: (T0338)C104.N and (T0338)W200.N only 0.000 apart, marking (T0338)C104.N as missing
WARNING: atoms too close: (T0338)A103.N and (T0338)W200.N only 0.000 apart, marking (T0338)A103.N as missing
WARNING: atoms too close: (T0338)H102.N and (T0338)W200.N only 0.000 apart, marking (T0338)H102.N as missing
WARNING: atoms too close: (T0338)A101.N and (T0338)W200.N only 0.000 apart, marking (T0338)A101.N as missing
WARNING: atoms too close: (T0338)V100.N and (T0338)W200.N only 0.000 apart, marking (T0338)V100.N as missing
WARNING: atoms too close: (T0338)K99.N and (T0338)W200.N only 0.000 apart, marking (T0338)K99.N as missing
WARNING: atoms too close: (T0338)I98.N and (T0338)W200.N only 0.000 apart, marking (T0338)I98.N as missing
WARNING: atoms too close: (T0338)V97.N and (T0338)W200.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)W200.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)W200.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)W200.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)W200.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)W200.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)W200.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)W200.N only 0.000 apart, marking (T0338)W200.N as missing
WARNING: atoms too close: (T0338)C104.CA and (T0338)W200.CA only 0.000 apart, marking (T0338)W200.CA as missing
WARNING: atoms too close: (T0338)A103.CA and (T0338)W200.CA only 0.000 apart, marking (T0338)W200.CA as missing
WARNING: atoms too close: (T0338)H102.CA and (T0338)W200.CA only 0.000 apart, marking (T0338)W200.CA as missing
WARNING: atoms too close: (T0338)A101.CA and (T0338)W200.CA only 0.000 apart, marking (T0338)W200.CA as missing
WARNING: atoms too close: (T0338)V100.CA and (T0338)W200.CA only 0.000 apart, marking (T0338)W200.CA as missing
WARNING: atoms too close: (T0338)K99.CA and (T0338)W200.CA only 0.000 apart, marking (T0338)W200.CA as missing
WARNING: atoms too close: (T0338)I98.CA and (T0338)W200.CA only 0.000 apart, marking (T0338)W200.CA as missing
WARNING: atoms too close: (T0338)V97.CA and (T0338)W200.CA only 0.000 apart, marking (T0338)W200.CA as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)W200.CA only 0.000 apart, marking (T0338)W200.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)W200.CA only 0.000 apart, marking (T0338)W200.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)W200.CA only 0.000 apart, marking (T0338)W200.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)W200.CA only 0.000 apart, marking (T0338)W200.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)W200.CA only 0.000 apart, marking (T0338)W200.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)W200.CA only 0.000 apart, marking (T0338)W200.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)W200.CA only 0.000 apart, marking (T0338)W200.CA as missing
WARNING: atoms too close: (T0338)C104.CB and (T0338)W200.CB only 0.000 apart, marking (T0338)W200.CB as missing
WARNING: atoms too close: (T0338)A103.CB and (T0338)W200.CB only 0.000 apart, marking (T0338)W200.CB as missing
WARNING: atoms too close: (T0338)H102.CB and (T0338)W200.CB only 0.000 apart, marking (T0338)W200.CB as missing
WARNING: atoms too close: (T0338)A101.CB and (T0338)W200.CB only 0.000 apart, marking (T0338)W200.CB as missing
WARNING: atoms too close: (T0338)V100.CB and (T0338)W200.CB only 0.000 apart, marking (T0338)W200.CB as missing
WARNING: atoms too close: (T0338)K99.CB and (T0338)W200.CB only 0.000 apart, marking (T0338)W200.CB as missing
WARNING: atoms too close: (T0338)I98.CB and (T0338)W200.CB only 0.000 apart, marking (T0338)W200.CB as missing
WARNING: atoms too close: (T0338)V97.CB and (T0338)W200.CB only 0.000 apart, marking (T0338)W200.CB as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)W200.CB only 0.000 apart, marking (T0338)W200.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)W200.CB only 0.000 apart, marking (T0338)W200.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)W200.CB only 0.000 apart, marking (T0338)W200.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)W200.CB only 0.000 apart, marking (T0338)W200.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)W200.CB only 0.000 apart, marking (T0338)W200.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)W200.CB only 0.000 apart, marking (T0338)W200.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)W200.CB only 0.000 apart, marking (T0338)W200.CB as missing
WARNING: atoms too close: (T0338)H102.CG and (T0338)W200.CG only 0.000 apart, marking (T0338)W200.CG as missing
WARNING: atoms too close: (T0338)V100.CG1 and (T0338)W200.CG only 0.000 apart, marking (T0338)W200.CG as missing
WARNING: atoms too close: (T0338)K99.CG and (T0338)W200.CG only 0.000 apart, marking (T0338)W200.CG as missing
WARNING: atoms too close: (T0338)I98.CG1 and (T0338)W200.CG only 0.000 apart, marking (T0338)W200.CG as missing
WARNING: atoms too close: (T0338)V97.CG1 and (T0338)W200.CG only 0.000 apart, marking (T0338)W200.CG as missing
WARNING: atoms too close: (T0338)H96.CG and (T0338)W200.CG only 0.000 apart, marking (T0338)W200.CG as missing
WARNING: atoms too close: (T0338)E95.CG and (T0338)W200.CG only 0.000 apart, marking (T0338)W200.CG as missing
WARNING: atoms too close: (T0338)L94.CG and (T0338)W200.CG only 0.000 apart, marking (T0338)W200.CG as missing
WARNING: atoms too close: (T0338)K93.CG and (T0338)W200.CG only 0.000 apart, marking (T0338)W200.CG as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)W200.CG only 0.000 apart, marking (T0338)W200.CG as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)W200.CG only 0.000 apart, marking (T0338)W200.CG as missing
WARNING: atoms too close: (T0338)C104.O and (T0338)W200.O only 0.000 apart, marking (T0338)W200.O as missing
WARNING: atoms too close: (T0338)A103.O and (T0338)W200.O only 0.000 apart, marking (T0338)W200.O as missing
WARNING: atoms too close: (T0338)H102.O and (T0338)W200.O only 0.000 apart, marking (T0338)W200.O as missing
WARNING: atoms too close: (T0338)A101.O and (T0338)W200.O only 0.000 apart, marking (T0338)W200.O as missing
WARNING: atoms too close: (T0338)V100.O and (T0338)W200.O only 0.000 apart, marking (T0338)W200.O as missing
WARNING: atoms too close: (T0338)K99.O and (T0338)W200.O only 0.000 apart, marking (T0338)W200.O as missing
WARNING: atoms too close: (T0338)I98.O and (T0338)W200.O only 0.000 apart, marking (T0338)W200.O as missing
WARNING: atoms too close: (T0338)V97.O and (T0338)W200.O only 0.000 apart, marking (T0338)W200.O as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)W200.O only 0.000 apart, marking (T0338)W200.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)W200.O only 0.000 apart, marking (T0338)W200.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)W200.O only 0.000 apart, marking (T0338)W200.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)W200.O only 0.000 apart, marking (T0338)W200.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)W200.O only 0.000 apart, marking (T0338)W200.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)W200.O only 0.000 apart, marking (T0338)W200.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)W200.O only 0.000 apart, marking (T0338)W200.O as missing
WARNING: atoms too close: (T0338)C104.C and (T0338)W200.C only 0.000 apart, marking (T0338)W200.C as missing
WARNING: atoms too close: (T0338)A103.C and (T0338)W200.C only 0.000 apart, marking (T0338)W200.C as missing
WARNING: atoms too close: (T0338)H102.C and (T0338)W200.C only 0.000 apart, marking (T0338)W200.C as missing
WARNING: atoms too close: (T0338)A101.C and (T0338)W200.C only 0.000 apart, marking (T0338)W200.C as missing
WARNING: atoms too close: (T0338)V100.C and (T0338)W200.C only 0.000 apart, marking (T0338)W200.C as missing
WARNING: atoms too close: (T0338)K99.C and (T0338)W200.C only 0.000 apart, marking (T0338)W200.C as missing
WARNING: atoms too close: (T0338)I98.C and (T0338)W200.C only 0.000 apart, marking (T0338)W200.C as missing
WARNING: atoms too close: (T0338)V97.C and (T0338)W200.C only 0.000 apart, marking (T0338)W200.C as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)W200.C only 0.000 apart, marking (T0338)W200.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)W200.C only 0.000 apart, marking (T0338)W200.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)W200.C only 0.000 apart, marking (T0338)W200.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)W200.C only 0.000 apart, marking (T0338)W200.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)W200.C only 0.000 apart, marking (T0338)W200.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)W200.C only 0.000 apart, marking (T0338)W200.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)W200.C only 0.000 apart, marking (T0338)W200.C as missing
WARNING: atoms too close: (T0338)W200.N and (T0338)S201.N only 0.000 apart, marking (T0338)W200.N as missing
WARNING: atoms too close: (T0338)C104.N and (T0338)S201.N only 0.000 apart, marking (T0338)C104.N as missing
WARNING: atoms too close: (T0338)A103.N and (T0338)S201.N only 0.000 apart, marking (T0338)A103.N as missing
WARNING: atoms too close: (T0338)H102.N and (T0338)S201.N only 0.000 apart, marking (T0338)H102.N as missing
WARNING: atoms too close: (T0338)A101.N and (T0338)S201.N only 0.000 apart, marking (T0338)A101.N as missing
WARNING: atoms too close: (T0338)V100.N and (T0338)S201.N only 0.000 apart, marking (T0338)V100.N as missing
WARNING: atoms too close: (T0338)K99.N and (T0338)S201.N only 0.000 apart, marking (T0338)K99.N as missing
WARNING: atoms too close: (T0338)I98.N and (T0338)S201.N only 0.000 apart, marking (T0338)I98.N as missing
WARNING: atoms too close: (T0338)V97.N and (T0338)S201.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)S201.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)S201.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)S201.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)S201.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)S201.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)S201.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)S201.N only 0.000 apart, marking (T0338)S201.N as missing
WARNING: atoms too close: (T0338)W200.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)C104.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)A103.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)H102.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)A101.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)V100.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)K99.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)I98.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)V97.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)S201.CA only 0.000 apart, marking (T0338)S201.CA as missing
WARNING: atoms too close: (T0338)W200.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)C104.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)A103.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)H102.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)A101.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)V100.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)K99.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)I98.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)V97.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)S201.CB only 0.000 apart, marking (T0338)S201.CB as missing
WARNING: atoms too close: (T0338)W200.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)C104.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)A103.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)H102.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)A101.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)V100.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)K99.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)I98.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)V97.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)S201.O only 0.000 apart, marking (T0338)S201.O as missing
WARNING: atoms too close: (T0338)W200.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)C104.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)A103.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)H102.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)A101.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)V100.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)K99.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)I98.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)V97.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)S201.C only 0.000 apart, marking (T0338)S201.C as missing
WARNING: atoms too close: (T0338)S201.N and (T0338)N202.N only 0.000 apart, marking (T0338)S201.N as missing
WARNING: atoms too close: (T0338)W200.N and (T0338)N202.N only 0.000 apart, marking (T0338)W200.N as missing
WARNING: atoms too close: (T0338)C104.N and (T0338)N202.N only 0.000 apart, marking (T0338)C104.N as missing
WARNING: atoms too close: (T0338)A103.N and (T0338)N202.N only 0.000 apart, marking (T0338)A103.N as missing
WARNING: atoms too close: (T0338)H102.N and (T0338)N202.N only 0.000 apart, marking (T0338)H102.N as missing
WARNING: atoms too close: (T0338)A101.N and (T0338)N202.N only 0.000 apart, marking (T0338)A101.N as missing
WARNING: atoms too close: (T0338)V100.N and (T0338)N202.N only 0.000 apart, marking (T0338)V100.N as missing
WARNING: atoms too close: (T0338)K99.N and (T0338)N202.N only 0.000 apart, marking (T0338)K99.N as missing
WARNING: atoms too close: (T0338)I98.N and (T0338)N202.N only 0.000 apart, marking (T0338)I98.N as missing
WARNING: atoms too close: (T0338)V97.N and (T0338)N202.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)N202.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)N202.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)N202.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)N202.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)N202.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)N202.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)N202.N only 0.000 apart, marking (T0338)N202.N as missing
WARNING: atoms too close: (T0338)S201.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)W200.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)C104.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)A103.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)H102.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)A101.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)V100.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)K99.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)I98.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)V97.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)N202.CA only 0.000 apart, marking (T0338)N202.CA as missing
WARNING: atoms too close: (T0338)S201.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)W200.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)C104.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)A103.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)H102.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)A101.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)V100.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)K99.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)I98.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)V97.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)N202.CB only 0.000 apart, marking (T0338)N202.CB as missing
WARNING: atoms too close: (T0338)W200.CG and (T0338)N202.CG only 0.000 apart, marking (T0338)N202.CG as missing
WARNING: atoms too close: (T0338)H102.CG and (T0338)N202.CG only 0.000 apart, marking (T0338)N202.CG as missing
WARNING: atoms too close: (T0338)V100.CG1 and (T0338)N202.CG only 0.000 apart, marking (T0338)N202.CG as missing
WARNING: atoms too close: (T0338)K99.CG and (T0338)N202.CG only 0.000 apart, marking (T0338)N202.CG as missing
WARNING: atoms too close: (T0338)I98.CG1 and (T0338)N202.CG only 0.000 apart, marking (T0338)N202.CG as missing
WARNING: atoms too close: (T0338)V97.CG1 and (T0338)N202.CG only 0.000 apart, marking (T0338)N202.CG as missing
WARNING: atoms too close: (T0338)H96.CG and (T0338)N202.CG only 0.000 apart, marking (T0338)N202.CG as missing
WARNING: atoms too close: (T0338)E95.CG and (T0338)N202.CG only 0.000 apart, marking (T0338)N202.CG as missing
WARNING: atoms too close: (T0338)L94.CG and (T0338)N202.CG only 0.000 apart, marking (T0338)N202.CG as missing
WARNING: atoms too close: (T0338)K93.CG and (T0338)N202.CG only 0.000 apart, marking (T0338)N202.CG as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)N202.CG only 0.000 apart, marking (T0338)N202.CG as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)N202.CG only 0.000 apart, marking (T0338)N202.CG as missing
WARNING: atoms too close: (T0338)S201.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)W200.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)C104.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)A103.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)H102.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)A101.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)V100.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)K99.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)I98.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)V97.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)N202.O only 0.000 apart, marking (T0338)N202.O as missing
WARNING: atoms too close: (T0338)S201.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)W200.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)C104.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)A103.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)H102.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)A101.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)V100.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)K99.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)I98.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)V97.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)N202.C only 0.000 apart, marking (T0338)N202.C as missing
WARNING: atoms too close: (T0338)N202.N and (T0338)W203.N only 0.000 apart, marking (T0338)N202.N as missing
WARNING: atoms too close: (T0338)S201.N and (T0338)W203.N only 0.000 apart, marking (T0338)S201.N as missing
WARNING: atoms too close: (T0338)W200.N and (T0338)W203.N only 0.000 apart, marking (T0338)W200.N as missing
WARNING: atoms too close: (T0338)C104.N and (T0338)W203.N only 0.000 apart, marking (T0338)C104.N as missing
WARNING: atoms too close: (T0338)A103.N and (T0338)W203.N only 0.000 apart, marking (T0338)A103.N as missing
WARNING: atoms too close: (T0338)H102.N and (T0338)W203.N only 0.000 apart, marking (T0338)H102.N as missing
WARNING: atoms too close: (T0338)A101.N and (T0338)W203.N only 0.000 apart, marking (T0338)A101.N as missing
WARNING: atoms too close: (T0338)V100.N and (T0338)W203.N only 0.000 apart, marking (T0338)V100.N as missing
WARNING: atoms too close: (T0338)K99.N and (T0338)W203.N only 0.000 apart, marking (T0338)K99.N as missing
WARNING: atoms too close: (T0338)I98.N and (T0338)W203.N only 0.000 apart, marking (T0338)I98.N as missing
WARNING: atoms too close: (T0338)V97.N and (T0338)W203.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)W203.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)W203.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)W203.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)W203.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)W203.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)W203.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)W203.N only 0.000 apart, marking (T0338)W203.N as missing
WARNING: atoms too close: (T0338)N202.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)S201.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)W200.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)C104.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)A103.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)H102.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)A101.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)V100.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)K99.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)I98.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)V97.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)W203.CA only 0.000 apart, marking (T0338)W203.CA as missing
WARNING: atoms too close: (T0338)N202.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)S201.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)W200.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)C104.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)A103.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)H102.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)A101.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)V100.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)K99.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)I98.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)V97.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)W203.CB only 0.000 apart, marking (T0338)W203.CB as missing
WARNING: atoms too close: (T0338)N202.CG and (T0338)W203.CG only 0.000 apart, marking (T0338)W203.CG as missing
WARNING: atoms too close: (T0338)W200.CG and (T0338)W203.CG only 0.000 apart, marking (T0338)W203.CG as missing
WARNING: atoms too close: (T0338)H102.CG and (T0338)W203.CG only 0.000 apart, marking (T0338)W203.CG as missing
WARNING: atoms too close: (T0338)V100.CG1 and (T0338)W203.CG only 0.000 apart, marking (T0338)W203.CG as missing
WARNING: atoms too close: (T0338)K99.CG and (T0338)W203.CG only 0.000 apart, marking (T0338)W203.CG as missing
WARNING: atoms too close: (T0338)I98.CG1 and (T0338)W203.CG only 0.000 apart, marking (T0338)W203.CG as missing
WARNING: atoms too close: (T0338)V97.CG1 and (T0338)W203.CG only 0.000 apart, marking (T0338)W203.CG as missing
WARNING: atoms too close: (T0338)H96.CG and (T0338)W203.CG only 0.000 apart, marking (T0338)W203.CG as missing
WARNING: atoms too close: (T0338)E95.CG and (T0338)W203.CG only 0.000 apart, marking (T0338)W203.CG as missing
WARNING: atoms too close: (T0338)L94.CG and (T0338)W203.CG only 0.000 apart, marking (T0338)W203.CG as missing
WARNING: atoms too close: (T0338)K93.CG and (T0338)W203.CG only 0.000 apart, marking (T0338)W203.CG as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)W203.CG only 0.000 apart, marking (T0338)W203.CG as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)W203.CG only 0.000 apart, marking (T0338)W203.CG as missing
WARNING: atoms too close: (T0338)N202.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)S201.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)W200.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)C104.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)A103.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)H102.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)A101.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)V100.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)K99.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)I98.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)V97.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)W203.O only 0.000 apart, marking (T0338)W203.O as missing
WARNING: atoms too close: (T0338)N202.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)S201.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)W200.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)C104.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)A103.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)H102.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)A101.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)V100.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)K99.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)I98.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)V97.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)W203.C only 0.000 apart, marking (T0338)W203.C as missing
WARNING: atoms too close: (T0338)W203.N and (T0338)E204.N only 0.000 apart, marking (T0338)W203.N as missing
WARNING: atoms too close: (T0338)N202.N and (T0338)E204.N only 0.000 apart, marking (T0338)N202.N as missing
WARNING: atoms too close: (T0338)S201.N and (T0338)E204.N only 0.000 apart, marking (T0338)S201.N as missing
WARNING: atoms too close: (T0338)W200.N and (T0338)E204.N only 0.000 apart, marking (T0338)W200.N as missing
WARNING: atoms too close: (T0338)C104.N and (T0338)E204.N only 0.000 apart, marking (T0338)C104.N as missing
WARNING: atoms too close: (T0338)A103.N and (T0338)E204.N only 0.000 apart, marking (T0338)A103.N as missing
WARNING: atoms too close: (T0338)H102.N and (T0338)E204.N only 0.000 apart, marking (T0338)H102.N as missing
WARNING: atoms too close: (T0338)A101.N and (T0338)E204.N only 0.000 apart, marking (T0338)A101.N as missing
WARNING: atoms too close: (T0338)V100.N and (T0338)E204.N only 0.000 apart, marking (T0338)V100.N as missing
WARNING: atoms too close: (T0338)K99.N and (T0338)E204.N only 0.000 apart, marking (T0338)K99.N as missing
WARNING: atoms too close: (T0338)I98.N and (T0338)E204.N only 0.000 apart, marking (T0338)I98.N as missing
WARNING: atoms too close: (T0338)V97.N and (T0338)E204.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)E204.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)E204.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)E204.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)E204.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)E204.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)E204.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)E204.N only 0.000 apart, marking (T0338)E204.N as missing
WARNING: atoms too close: (T0338)W203.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)N202.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)S201.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)W200.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)C104.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)A103.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)H102.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)A101.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)V100.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)K99.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)I98.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)V97.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)E204.CA only 0.000 apart, marking (T0338)E204.CA as missing
WARNING: atoms too close: (T0338)W203.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)N202.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)S201.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)W200.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)C104.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)A103.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)H102.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)A101.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)V100.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)K99.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)I98.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)V97.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)E204.CB only 0.000 apart, marking (T0338)E204.CB as missing
WARNING: atoms too close: (T0338)W203.CG and (T0338)E204.CG only 0.000 apart, marking (T0338)E204.CG as missing
WARNING: atoms too close: (T0338)N202.CG and (T0338)E204.CG only 0.000 apart, marking (T0338)E204.CG as missing
WARNING: atoms too close: (T0338)W200.CG and (T0338)E204.CG only 0.000 apart, marking (T0338)E204.CG as missing
WARNING: atoms too close: (T0338)H102.CG and (T0338)E204.CG only 0.000 apart, marking (T0338)E204.CG as missing
WARNING: atoms too close: (T0338)V100.CG1 and (T0338)E204.CG only 0.000 apart, marking (T0338)E204.CG as missing
WARNING: atoms too close: (T0338)K99.CG and (T0338)E204.CG only 0.000 apart, marking (T0338)E204.CG as missing
WARNING: atoms too close: (T0338)I98.CG1 and (T0338)E204.CG only 0.000 apart, marking (T0338)E204.CG as missing
WARNING: atoms too close: (T0338)V97.CG1 and (T0338)E204.CG only 0.000 apart, marking (T0338)E204.CG as missing
WARNING: atoms too close: (T0338)H96.CG and (T0338)E204.CG only 0.000 apart, marking (T0338)E204.CG as missing
WARNING: atoms too close: (T0338)E95.CG and (T0338)E204.CG only 0.000 apart, marking (T0338)E204.CG as missing
WARNING: atoms too close: (T0338)L94.CG and (T0338)E204.CG only 0.000 apart, marking (T0338)E204.CG as missing
WARNING: atoms too close: (T0338)K93.CG and (T0338)E204.CG only 0.000 apart, marking (T0338)E204.CG as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)E204.CG only 0.000 apart, marking (T0338)E204.CG as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)E204.CG only 0.000 apart, marking (T0338)E204.CG as missing
WARNING: atoms too close: (T0338)W203.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)N202.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)S201.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)W200.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)C104.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)A103.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)H102.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)A101.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)V100.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)K99.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)I98.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)V97.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)E204.O only 0.000 apart, marking (T0338)E204.O as missing
WARNING: atoms too close: (T0338)W203.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)N202.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)S201.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)W200.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)C104.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)A103.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)H102.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)A101.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)V100.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)K99.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)I98.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)V97.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)E204.C only 0.000 apart, marking (T0338)E204.C as missing
WARNING: atoms too close: (T0338)E204.N and (T0338)I205.N only 0.000 apart, marking (T0338)E204.N as missing
WARNING: atoms too close: (T0338)W203.N and (T0338)I205.N only 0.000 apart, marking (T0338)W203.N as missing
WARNING: atoms too close: (T0338)N202.N and (T0338)I205.N only 0.000 apart, marking (T0338)N202.N as missing
WARNING: atoms too close: (T0338)S201.N and (T0338)I205.N only 0.000 apart, marking (T0338)S201.N as missing
WARNING: atoms too close: (T0338)W200.N and (T0338)I205.N only 0.000 apart, marking (T0338)W200.N as missing
WARNING: atoms too close: (T0338)C104.N and (T0338)I205.N only 0.000 apart, marking (T0338)C104.N as missing
WARNING: atoms too close: (T0338)A103.N and (T0338)I205.N only 0.000 apart, marking (T0338)A103.N as missing
WARNING: atoms too close: (T0338)H102.N and (T0338)I205.N only 0.000 apart, marking (T0338)H102.N as missing
WARNING: atoms too close: (T0338)A101.N and (T0338)I205.N only 0.000 apart, marking (T0338)A101.N as missing
WARNING: atoms too close: (T0338)V100.N and (T0338)I205.N only 0.000 apart, marking (T0338)V100.N as missing
WARNING: atoms too close: (T0338)K99.N and (T0338)I205.N only 0.000 apart, marking (T0338)K99.N as missing
WARNING: atoms too close: (T0338)I98.N and (T0338)I205.N only 0.000 apart, marking (T0338)I98.N as missing
WARNING: atoms too close: (T0338)V97.N and (T0338)I205.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)I205.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)I205.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)I205.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)I205.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)I205.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)I205.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)I205.N only 0.000 apart, marking (T0338)I205.N as missing
WARNING: atoms too close: (T0338)E204.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)W203.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)N202.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)S201.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)W200.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)C104.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)A103.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)H102.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)A101.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)V100.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)K99.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)I98.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)V97.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)I205.CA only 0.000 apart, marking (T0338)I205.CA as missing
WARNING: atoms too close: (T0338)E204.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)W203.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)N202.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)S201.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)W200.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)C104.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)A103.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)H102.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)A101.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)V100.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)K99.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)I98.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)V97.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)I205.CB only 0.000 apart, marking (T0338)I205.CB as missing
WARNING: atoms too close: (T0338)E204.CG and (T0338)I205.CG1 only 0.000 apart, marking (T0338)I205.CG1 as missing
WARNING: atoms too close: (T0338)W203.CG and (T0338)I205.CG1 only 0.000 apart, marking (T0338)I205.CG1 as missing
WARNING: atoms too close: (T0338)N202.CG and (T0338)I205.CG1 only 0.000 apart, marking (T0338)I205.CG1 as missing
WARNING: atoms too close: (T0338)W200.CG and (T0338)I205.CG1 only 0.000 apart, marking (T0338)I205.CG1 as missing
WARNING: atoms too close: (T0338)H102.CG and (T0338)I205.CG1 only 0.000 apart, marking (T0338)I205.CG1 as missing
WARNING: atoms too close: (T0338)V100.CG1 and (T0338)I205.CG1 only 0.000 apart, marking (T0338)I205.CG1 as missing
WARNING: atoms too close: (T0338)K99.CG and (T0338)I205.CG1 only 0.000 apart, marking (T0338)I205.CG1 as missing
WARNING: atoms too close: (T0338)I98.CG1 and (T0338)I205.CG1 only 0.000 apart, marking (T0338)I205.CG1 as missing
WARNING: atoms too close: (T0338)V97.CG1 and (T0338)I205.CG1 only 0.000 apart, marking (T0338)I205.CG1 as missing
WARNING: atoms too close: (T0338)H96.CG and (T0338)I205.CG1 only 0.000 apart, marking (T0338)I205.CG1 as missing
WARNING: atoms too close: (T0338)E95.CG and (T0338)I205.CG1 only 0.000 apart, marking (T0338)I205.CG1 as missing
WARNING: atoms too close: (T0338)L94.CG and (T0338)I205.CG1 only 0.000 apart, marking (T0338)I205.CG1 as missing
WARNING: atoms too close: (T0338)K93.CG and (T0338)I205.CG1 only 0.000 apart, marking (T0338)I205.CG1 as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)I205.CG1 only 0.000 apart, marking (T0338)I205.CG1 as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)I205.CG1 only 0.000 apart, marking (T0338)I205.CG1 as missing
WARNING: atoms too close: (T0338)E204.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)W203.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)N202.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)S201.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)W200.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)C104.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)A103.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)H102.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)A101.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)V100.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)K99.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)I98.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)V97.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)I205.O only 0.000 apart, marking (T0338)I205.O as missing
WARNING: atoms too close: (T0338)E204.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)W203.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)N202.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)S201.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)W200.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)C104.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)A103.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)H102.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)A101.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)V100.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)K99.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)I98.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)V97.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)I205.C only 0.000 apart, marking (T0338)I205.C as missing
WARNING: atoms too close: (T0338)I205.N and (T0338)P206.N only 0.000 apart, marking (T0338)I205.N as missing
WARNING: atoms too close: (T0338)E204.N and (T0338)P206.N only 0.000 apart, marking (T0338)E204.N as missing
WARNING: atoms too close: (T0338)W203.N and (T0338)P206.N only 0.000 apart, marking (T0338)W203.N as missing
WARNING: atoms too close: (T0338)N202.N and (T0338)P206.N only 0.000 apart, marking (T0338)N202.N as missing
WARNING: atoms too close: (T0338)S201.N and (T0338)P206.N only 0.000 apart, marking (T0338)S201.N as missing
WARNING: atoms too close: (T0338)W200.N and (T0338)P206.N only 0.000 apart, marking (T0338)W200.N as missing
WARNING: atoms too close: (T0338)C104.N and (T0338)P206.N only 0.000 apart, marking (T0338)C104.N as missing
WARNING: atoms too close: (T0338)A103.N and (T0338)P206.N only 0.000 apart, marking (T0338)A103.N as missing
WARNING: atoms too close: (T0338)H102.N and (T0338)P206.N only 0.000 apart, marking (T0338)H102.N as missing
WARNING: atoms too close: (T0338)A101.N and (T0338)P206.N only 0.000 apart, marking (T0338)A101.N as missing
WARNING: atoms too close: (T0338)V100.N and (T0338)P206.N only 0.000 apart, marking (T0338)V100.N as missing
WARNING: atoms too close: (T0338)K99.N and (T0338)P206.N only 0.000 apart, marking (T0338)K99.N as missing
WARNING: atoms too close: (T0338)I98.N and (T0338)P206.N only 0.000 apart, marking (T0338)I98.N as missing
WARNING: atoms too close: (T0338)V97.N and (T0338)P206.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)P206.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)P206.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)P206.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)P206.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)P206.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)P206.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)P206.N only 0.000 apart, marking (T0338)P206.N as missing
WARNING: atoms too close: (T0338)I205.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)E204.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)W203.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)N202.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)S201.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)W200.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)C104.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)A103.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)H102.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)A101.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)V100.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)K99.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)I98.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)V97.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)P206.CA only 0.000 apart, marking (T0338)P206.CA as missing
WARNING: atoms too close: (T0338)I205.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)E204.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)W203.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)N202.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)S201.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)W200.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)C104.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)A103.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)H102.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)A101.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)V100.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)K99.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)I98.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)V97.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)P206.CB only 0.000 apart, marking (T0338)P206.CB as missing
WARNING: atoms too close: (T0338)I205.CG1 and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)E204.CG and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)W203.CG and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)N202.CG and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)W200.CG and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)H102.CG and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)V100.CG1 and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)K99.CG and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)I98.CG1 and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)V97.CG1 and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)H96.CG and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)E95.CG and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)L94.CG and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)K93.CG and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)P206.CG only 0.000 apart, marking (T0338)P206.CG as missing
WARNING: atoms too close: (T0338)I205.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)E204.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)W203.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)N202.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)S201.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)W200.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)C104.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)A103.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)H102.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)A101.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)V100.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)K99.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)I98.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)V97.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)P206.O only 0.000 apart, marking (T0338)P206.O as missing
WARNING: atoms too close: (T0338)I205.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)E204.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)W203.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)N202.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)S201.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)W200.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)C104.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)A103.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)H102.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)A101.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)V100.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)K99.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)I98.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)V97.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)P206.C only 0.000 apart, marking (T0338)P206.C as missing
WARNING: atoms too close: (T0338)P206.N and (T0338)V207.N only 0.000 apart, marking (T0338)P206.N as missing
WARNING: atoms too close: (T0338)I205.N and (T0338)V207.N only 0.000 apart, marking (T0338)I205.N as missing
WARNING: atoms too close: (T0338)E204.N and (T0338)V207.N only 0.000 apart, marking (T0338)E204.N as missing
WARNING: atoms too close: (T0338)W203.N and (T0338)V207.N only 0.000 apart, marking (T0338)W203.N as missing
WARNING: atoms too close: (T0338)N202.N and (T0338)V207.N only 0.000 apart, marking (T0338)N202.N as missing
WARNING: atoms too close: (T0338)S201.N and (T0338)V207.N only 0.000 apart, marking (T0338)S201.N as missing
WARNING: atoms too close: (T0338)W200.N and (T0338)V207.N only 0.000 apart, marking (T0338)W200.N as missing
WARNING: atoms too close: (T0338)C104.N and (T0338)V207.N only 0.000 apart, marking (T0338)C104.N as missing
WARNING: atoms too close: (T0338)A103.N and (T0338)V207.N only 0.000 apart, marking (T0338)A103.N as missing
WARNING: atoms too close: (T0338)H102.N and (T0338)V207.N only 0.000 apart, marking (T0338)H102.N as missing
WARNING: atoms too close: (T0338)A101.N and (T0338)V207.N only 0.000 apart, marking (T0338)A101.N as missing
WARNING: atoms too close: (T0338)V100.N and (T0338)V207.N only 0.000 apart, marking (T0338)V100.N as missing
WARNING: atoms too close: (T0338)K99.N and (T0338)V207.N only 0.000 apart, marking (T0338)K99.N as missing
WARNING: atoms too close: (T0338)I98.N and (T0338)V207.N only 0.000 apart, marking (T0338)I98.N as missing
WARNING: atoms too close: (T0338)V97.N and (T0338)V207.N only 0.000 apart, marking (T0338)V97.N as missing
WARNING: atoms too close: (T0338)H96.N and (T0338)V207.N only 0.000 apart, marking (T0338)H96.N as missing
WARNING: atoms too close: (T0338)E95.N and (T0338)V207.N only 0.000 apart, marking (T0338)E95.N as missing
WARNING: atoms too close: (T0338)L94.N and (T0338)V207.N only 0.000 apart, marking (T0338)L94.N as missing
WARNING: atoms too close: (T0338)K93.N and (T0338)V207.N only 0.000 apart, marking (T0338)K93.N as missing
WARNING: atoms too close: (T0338)R92.N and (T0338)V207.N only 0.000 apart, marking (T0338)R92.N as missing
WARNING: atoms too close: (T0338)A91.N and (T0338)V207.N only 0.000 apart, marking (T0338)A91.N as missing
WARNING: atoms too close: (T0338)Q90.N and (T0338)V207.N only 0.000 apart, marking (T0338)V207.N as missing
WARNING: atoms too close: (T0338)P206.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)I205.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)E204.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)W203.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)N202.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)S201.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)W200.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)C104.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)A103.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)H102.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)A101.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)V100.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)K99.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)I98.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)V97.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)H96.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)E95.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)L94.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)K93.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)R92.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)A91.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)Q90.CA and (T0338)V207.CA only 0.000 apart, marking (T0338)V207.CA as missing
WARNING: atoms too close: (T0338)P206.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)I205.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)E204.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)W203.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)N202.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)S201.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)W200.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)C104.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)A103.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)H102.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)A101.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)V100.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)K99.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)I98.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)V97.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)H96.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)E95.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)L94.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)K93.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)R92.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)A91.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)Q90.CB and (T0338)V207.CB only 0.000 apart, marking (T0338)V207.CB as missing
WARNING: atoms too close: (T0338)P206.CG and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)I205.CG1 and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)E204.CG and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)W203.CG and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)N202.CG and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)W200.CG and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)H102.CG and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)V100.CG1 and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)K99.CG and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)I98.CG1 and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)V97.CG1 and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)H96.CG and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)E95.CG and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)L94.CG and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)K93.CG and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)R92.CG and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)Q90.CG and (T0338)V207.CG1 only 0.000 apart, marking (T0338)V207.CG1 as missing
WARNING: atoms too close: (T0338)P206.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)I205.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)E204.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)W203.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)N202.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)S201.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)W200.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)C104.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)A103.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)H102.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)A101.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)V100.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)K99.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)I98.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)V97.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)H96.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)E95.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)L94.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)K93.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)R92.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)A91.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)Q90.O and (T0338)V207.O only 0.000 apart, marking (T0338)V207.O as missing
WARNING: atoms too close: (T0338)P206.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)I205.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)E204.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)W203.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)N202.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)S201.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)W200.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)C104.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)A103.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)H102.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)A101.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)V100.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)K99.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)I98.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)V97.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)H96.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)E95.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)L94.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)K93.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)R92.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)A91.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
WARNING: atoms too close: (T0338)Q90.C and (T0338)V207.C only 0.000 apart, marking (T0338)V207.C as missing
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation panther2_TS1
# ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0338 can't currently be optimized by undertaker
# naming current conformation shub_TS1
# command:Using radius: 8.0000
Metaserver mode
NUMB_ALIGNS: 270
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model score -0.2592
model score -0.2977
model score -0.2936
model score -0.1967
model score -0.3442
model score -0.3506
model score -0.3438
model score -0.2842
model score -0.3537
model score -0.2866
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model score -0.2412
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model score -0.2389
model score -0.2606
model score -0.1101
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model score -0.0703
model score 1.3172
model score 1.5271
model score 1.4817
model score 1.4535
model score 1.3022
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model score -0.3277
model score -0.3316
model score -0.3215
model score -0.2409
model score -0.2104
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model score 0.0515
model score 0.1576
model score 0.7069
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model score -0.4308
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model score -0.4297
model score -0.3509
model score 1.2771
model score 1.2771
model score 1.2771
model score 1.2771
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model score -0.1884
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model score -0.2172
model score -0.1592
model score -0.2046
model score -0.2456
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model score -0.1592
model score -0.2104
model score 0.0515
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model score -0.2925
model score -0.1354
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model score -0.1331
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model score 1.2771
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model score 1.2771
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model score 2.4551
model score 2.1390
model score 2.2556
model score 2.4217
model score 2.2926
model score -0.3690
model score -0.1485
model score -0.1420
model score -0.1369
model score 2.3413
model score 1.2771
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model score 1.2771
model score 1.2771
model score 1.2771
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model score 0.1863
model score -0.1822
model score -0.1969
model score 0.2035
model score 0.0105
model score 1.5097
model score -0.2776
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model score -0.1097
model score -0.2567
model score -0.0824
model score -0.2511
model score -0.2544
model score -0.2410
model score 1.7481
model score -0.0856
model score 1.7131
model score 0.9633
model score 2.0461
model score -0.1391
model score -0.0386
model score 0.0535
model score -0.1530
model score -0.1396
model score 1.2771
model score -0.1766
model score -0.2514
model score -0.1102
model score -0.2191
model score 1.6646
model score -0.1817
model score -0.1970
model score -0.1102
model score -0.3976
model score 1.7322
model score -0.4364
model score -0.4980
model score -0.3837
model score -0.4205
model score -0.3387
model score -0.1391
model score 1.2761
model score 1.2799
model score 1.2770
model score 1.2798
model score 1.2791
model score -0.2819
model score -0.2860
model score -0.3281
model score -0.3561
model score -0.3768
model score -0.1662
model score -0.1481
model score -0.3841
model score -0.2073
model score -0.3319
model score -0.3926
model score -0.4217
model score -0.3084
model score -0.4328
model score -0.2749
model score -0.4275
model score 0.0696
model score 0.0262
model score 0.0696
model score 0.0960
model score 0.0567
model score -0.4168
model score -0.3741
model score -0.3944
model score -0.4092
model score -0.3322
model score -0.4341
model score -0.4112
model score -0.4231
model score -0.4420
model score -0.4388
model score -0.2303
model score -0.1648
model score -0.2863
model score -0.3064
model score 0.0204
model score -0.2845
model score -0.1932
model score -0.3337
model score -0.3516
model score 0.0016
model score -0.4092
model score -0.4455
model score -0.3944
model score -0.3996
model score -0.4168
model score -0.3139
model score -0.3294
model score -0.3291
model score -0.3075
model score -0.3090
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model score 1.2771
model score 1.2771
model score 1.2771
model score 1.2771
model score 1.2771
model score 1.2771
model score 1.2771
model score 1.2771
model score 1.2771
model score -0.1713
model score -0.4603
model score -0.5404
model score -0.3225
model score -0.1603
model score -0.2658
model score -0.2024
model score -0.2105
model score -0.3554
model score -0.2011
model score -0.2978
model score -0.1942
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model score -0.1935
model score -0.3085
model score -0.2340
model score -0.1834
model score -0.3632
model score -0.2018
model score -0.2881
model score 1.2771
model score 1.2771
model score 1.2771
model score 1.2771
model score 1.2771
model score -0.2244
model score 1.2771
model score 1.2771
model score 1.2771
model score 1.2771
model score 1.2771
model score -0.4059
model score -0.3909
model score -0.3962
model score -0.3688
model score -0.4269
model score -0.3292
model score -0.2718
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model score 1.2771
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model score 1.2771
model score 1.3812
model score 1.5027
model score 1.4275
model score 1.4190
model score 1.4491
model score 2.0665
model score 2.2644
model score 2.7680
model score 2.5606
model score -0.0842
model score -0.0343
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model score 0.2782
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model score -0.0853
model score -0.0851
model score -0.3130
model score -0.0764
model score -0.1928
model score -0.1641
model score -0.3432
model score -0.3220
weight: 0.9208 eval: -0.2492 min: -0.5404 max: 2.7680
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weight: 0.5056 eval: 1.2771 min: -0.5404 max: 2.7680
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weight: 0.9109 eval: -0.2130 min: -0.5404 max: 2.7680
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weight: 0.9555 eval: -0.3768 min: -0.5404 max: 2.7680
weight: 0.8982 eval: -0.1662 min: -0.5404 max: 2.7680
weight: 0.8933 eval: -0.1481 min: -0.5404 max: 2.7680
weight: 0.9575 eval: -0.3841 min: -0.5404 max: 2.7680
weight: 0.9094 eval: -0.2073 min: -0.5404 max: 2.7680
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weight: 1.0000 eval: -0.5404 min: -0.5404 max: 2.7680
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weight: 0.8966 eval: -0.1603 min: -0.5404 max: 2.7680
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weight: 0.9080 eval: -0.2024 min: -0.5404 max: 2.7680
weight: 0.9103 eval: -0.2105 min: -0.5404 max: 2.7680
weight: 0.9497 eval: -0.3554 min: -0.5404 max: 2.7680
weight: 0.9077 eval: -0.2011 min: -0.5404 max: 2.7680
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weight: 0.5056 eval: 1.2771 min: -0.5404 max: 2.7680
weight: 0.5056 eval: 1.2771 min: -0.5404 max: 2.7680
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weight: 0.5056 eval: 1.2771 min: -0.5404 max: 2.7680
weight: 0.5056 eval: 1.2771 min: -0.5404 max: 2.7680
weight: 0.5056 eval: 1.2771 min: -0.5404 max: 2.7680
weight: 0.5056 eval: 1.2771 min: -0.5404 max: 2.7680
weight: 0.5056 eval: 1.2771 min: -0.5404 max: 2.7680
weight: 0.5056 eval: 1.2771 min: -0.5404 max: 2.7680
weight: 0.5056 eval: 1.2771 min: -0.5404 max: 2.7680
weight: 0.5056 eval: 1.2771 min: -0.5404 max: 2.7680
weight: 0.5056 eval: 1.2771 min: -0.5404 max: 2.7680
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weight: 0.4647 eval: 1.4275 min: -0.5404 max: 2.7680
weight: 0.4670 eval: 1.4190 min: -0.5404 max: 2.7680
weight: 0.4588 eval: 1.4491 min: -0.5404 max: 2.7680
weight: 0.2909 eval: 2.0665 min: -0.5404 max: 2.7680
weight: 0.2370 eval: 2.2644 min: -0.5404 max: 2.7680
weight: 0.1000 eval: 2.7680 min: -0.5404 max: 2.7680
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weight: 0.8759 eval: -0.0842 min: -0.5404 max: 2.7680
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weight: 0.9273 eval: -0.2731 min: -0.5404 max: 2.7680
weight: 0.7773 eval: 0.2782 min: -0.5404 max: 2.7680
weight: 0.7817 eval: 0.2620 min: -0.5404 max: 2.7680
weight: 0.9308 eval: -0.2861 min: -0.5404 max: 2.7680
weight: 0.9750 eval: -0.4486 min: -0.5404 max: 2.7680
weight: 0.9238 eval: -0.2604 min: -0.5404 max: 2.7680
weight: 0.9096 eval: -0.2081 min: -0.5404 max: 2.7680
weight: 0.9447 eval: -0.3373 min: -0.5404 max: 2.7680
weight: 0.8762 eval: -0.0853 min: -0.5404 max: 2.7680
weight: 0.8761 eval: -0.0851 min: -0.5404 max: 2.7680
weight: 0.9381 eval: -0.3130 min: -0.5404 max: 2.7680
weight: 0.8738 eval: -0.0764 min: -0.5404 max: 2.7680
weight: 0.9054 eval: -0.1928 min: -0.5404 max: 2.7680
weight: 0.8976 eval: -0.1641 min: -0.5404 max: 2.7680
weight: 0.9463 eval: -0.3432 min: -0.5404 max: 2.7680
weight: 0.9406 eval: -0.3220 min: -0.5404 max: 2.7680
Adding 9357 constraints to all2.constraints
Done adding distance constraints
# command:Reading probabilities from probabilities.dat
Reading constraints from ConstraintSet all2.constraints
maxweight: 1.0000
Optimizing...
 Probability sum: -439.4094, CN propb: -439.4094 weights: 0.4188 constraints: 456
# command:Found ConstraintSet
# PrintContacts align.constraints_meta02
Number of constraints in align2.constraints 456
# command:Found ConstraintSet
# PrintContacts align_bonus.constraints_meta02
Number of constraints in align2.constraints.bonus 456
# command:Found ConstraintSet
# PrintContacts rejected.constraints_meta02
Number of constraints in rejected2.constraints 8901
# command:Found ConstraintSet
# PrintContacts rejected_bonus.constraints_meta02
Number of constraints in rejected2.constraints.bonus 8901
# command:Found ConstraintSet
# PrintContacts non_contacts.constraints_meta02
Number of constraints in noncontact2.constraints 0
# command:Found ConstraintSet
# PrintContacts non_contacts_bonus.constraints_meta02
Number of constraints in noncontact2.constraints.bonus 0
# command:Found ConstraintSet
# PrintContacts all.constraints_meta02
Number of constraints in all2.constraints 9357
# command: