# List of top-scoring protein chains for T0336.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qgrA 876 1.43e-39 1qgrA a.118.1.1 19119 1uklA 876 2.33e-39 a.118.1.1 99493 2bptA 861 2.72e-35 1m5nS 485 1.24e-30 a.118.1.1 78653 1qbkB 890 1.11e-27 1qbkB a.118.1.1 19127 1ibrB 462 2.01e-27 1qgrA a.118.1.1 19120 1gcjA 460 3.97e-25 1qgrA a.118.1.1 19125 1f59A 442 1.91e-24 1qgrA a.118.1.1 19123 1gw5B 591 2.62e-04 a.118.1.10 70630 1w63B 584 4.06e-03 i.23.1.1 109193 1u6gC 1230 1.44e-01 1vp2A 208 1.22e+00 1thg 544 1.75e+00 1thg c.69.1.17 34763 1b3uA 588 2.05e+00 1b3uA a.118.1.2 19135 1te4A 131 2.92e+00 a.118.1.16 106794 1rtwA 220 4.76e+00 a.132.1.3 97823 1azwA 313 4.85e+00 1qtrA c.69.1.7 34658 1vl0A 292 5.73e+00 c.2.1.2 108704 1vr9A 213 8.74e+00 1jeyB 565 1.16e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 2b5dX 528 1.57e+01 1ysxA 201 1.72e+01 1nkwH 174 1.82e+01 i.1.1.2 80593 1bkpA 278 1.82e+01 1bkpA d.117.1.1 41029 1b02A 279 1.86e+01 1bkpA d.117.1.1 41035 2f4nA 273 2.12e+01 1a5z 319 2.24e+01 1ceqA c.2.1.5,d.162.1.1 30181,42148 1ojnA 731 2.38e+01 a.102.3.2,b.24.1.1,b.30.5.2 93137,93138,93139 1lxkA 721 2.38e+01 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 1ojoA 731 2.38e+01 a.102.3.2,b.24.1.1,b.30.5.2 93140,93141,93142 1tu5A 746 2.42e+01 2d83A 363 2.49e+01 1bk5A 422 2.76e+01 1bk5A a.118.1.1 19130 1bk6A 422 2.77e+01 1bk5A a.118.1.1 19133 1twfB 1224 2.84e+01 1un0A 443 2.86e+01 a.118.1.1 99641 1ee4A 423 2.86e+01 1ee4A a.118.1.1 19128 1ee5A 424 2.86e+01 1ee4A a.118.1.1 19132 2c1tA 454 2.86e+01 1wz2A 967 2.88e+01 1cw4A 416 2.98e+01 1iso c.77.1.1 35068 1b6a 478 3.38e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1zakA 222 3.41e+01 1zin c.37.1.1,g.41.2.1 31913,45202 1qzyA 478 3.43e+01 a.4.5.25,d.127.1.1 96717,96718 1xqsA 280 3.66e+01 1wa5B 530 3.71e+01 1xqrA 296 3.78e+01 1ux6A 350 4.08e+01 b.29.1.16,g.75.1.1 100145,100146 1w19A 160 4.13e+01 1grp 416 4.56e+01 1iso c.77.1.1 35077 1hj6A 416 4.57e+01 1iso c.77.1.1 35070 2avsA 99 4.70e+01 6icd 416 4.71e+01 1iso c.77.1.1 35081 1chuA 540 4.80e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1f76A 336 4.83e+01 c.1.4.1 76160 1r6fA 310 4.84e+01 e.46.1.1 97149 1bl5 414 4.97e+01 1iso c.77.1.1 35083 1h7eA 245 4.97e+01 c.68.1.13 60717 1pb1A 416 4.99e+01 c.77.1.1 88014 1opoA 348 5.12e+01 b.121.4.7 87240 2avmA 99 5.13e+01 1vrbA 342 5.18e+01 1ialA 453 5.24e+01 1bk5A a.118.1.1 19116 1vorK 143 5.26e+01 1q1sC 466 5.28e+01 a.118.1.1 95606 1y2aC 428 5.29e+01 1pjmB 460 5.29e+01 a.118.1.1 94764 1qltA 560 5.30e+01 1qltA d.58.32.1,d.145.1.1 39457,41720 2c1mA 424 5.31e+01 1gro 416 5.34e+01 1iso c.77.1.1 35079 1wg8A 285 5.38e+01 2g8lA 299 5.46e+01 1xnfA 275 5.52e+01 1k0fA 277 5.68e+01 c.92.2.2 71974 1hvc 203 5.72e+01 1hvc b.50.1.1 26614 1fg6C 99 6.01e+01 1hvc b.50.1.1 59817 2f1vA 197 6.05e+01 1ide 416 6.05e+01 1iso c.77.1.1 35082 1y14A 187 6.11e+01 1a94A 99 6.22e+01 1fmb b.50.1.1 26599 1wi7A 68 6.23e+01 2aocA 99 6.28e+01 1k2bA 99 6.47e+01 b.50.1.1 72006 1ti6B 274 6.50e+01 b.3.5.1,d.58.1.5 106976,106977 1eguA 731 6.55e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 2b63D 221 6.55e+01 1ojmA 729 6.55e+01 a.102.3.2,b.24.1.1,b.30.5.2 93134,93135,93136 1dv1A 449 6.60e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1g6lA 203 6.75e+01 1hvc b.50.1.1,b.50.1.1 26559,26560 1lv1A 203 6.77e+01 b.50.1.1,b.50.1.1 74273,74274 1ebkC 99 6.78e+01 1hvc b.50.1.1 26610 1xnwA 530 6.78e+01 1cw7A 416 6.84e+01 1iso c.77.1.1 35087 2a7sA 548 6.86e+01 1s6gA 99 6.89e+01 b.50.1.1 105308 1ygrA 610 6.93e+01 1z5hA 780 6.95e+01 1dv2A 452 7.01e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1n2nA 419 7.08e+01 d.174.1.1 79855 1dwvA 420 7.10e+01 1nseA d.174.1.1 42501 2bhjA 422 7.10e+01 1df1A 423 7.11e+01 1nseA d.174.1.1 42499 1m8dA 434 7.14e+01 d.174.1.1 74581 1qomA 440 7.14e+01 1nseA d.174.1.1 42514 1jwjA 433 7.14e+01 d.174.1.1 67385 1r35A 433 7.15e+01 1x9fD 140 7.17e+01 2fe8A 315 7.30e+01 1q9pA 95 7.35e+01 b.50.1.1 96300 1u5kA 244 7.36e+01 1sduA 99 7.37e+01 b.50.1.1 105444 2ahoB 266 7.44e+01 1xo6A 530 7.47e+01 1f2hA 169 7.49e+01 1f3vA d.58.22.1 59612 1knrA 540 7.76e+01 a.7.3.1,c.3.1.4,d.168.1.1 72788,72789,72790 1lqtA 456 7.82e+01 c.3.1.1,c.4.1.1 74198,74199 1ioaA 240 7.86e+01 1led b.29.1.1 24168 1n7qA 721 7.93e+01 a.102.3.2,b.24.1.1,b.30.5.2 80265,80266,80267 1k78A 149 8.09e+01 a.4.1.5,a.4.1.5 68255,68256 1k7kA 221 8.38e+01 c.51.4.1 72104 1jcfA 344 8.42e+01 c.55.1.1,c.55.1.1 62878,62879 1n7nA 721 8.61e+01 a.102.3.2,b.24.1.1,b.30.5.2 80256,80257,80258 2f80A 99 8.70e+01 1n7oA 721 8.74e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1pr9A 244 8.78e+01 c.2.1.2 95060 1toaA 313 8.87e+01 1toaA c.92.2.2 35598 2fug4 409 8.89e+01 1bu8A 452 8.96e+01 1gpl b.12.1.2,c.69.1.19 23647,34795 2ctzA 421 8.97e+01