# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0335/ # command:# Making conformation for sequence T0335 numbered 1 through 85 Created new target T0335 from T0335.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0335/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0335//projects/compbio/experiments/protein-predict/casp7/T0335/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0335//projects/compbio/experiments/protein-predict/casp7/T0335/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0335/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0335/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0335)L38.CB, (T0335)L67.CB) [> 3.9178 = 6.5296 < 8.4885] w=1.0000 to align # Constraint # added constraint: constraint((T0335)K16.CB, (T0335)E26.CB) [> 4.3738 = 7.2896 < 9.4766] w=0.9324 to align # Constraint # added constraint: constraint((T0335)L13.CB, (T0335)E26.CB) [> 3.7689 = 6.2815 < 8.1660] w=0.9324 to align # Constraint # added constraint: constraint((T0335)F41.CB, (T0335)L67.CB) [> 3.4543 = 5.7572 < 7.4844] w=0.9164 to align # Constraint # added constraint: constraint((T0335)L13.CB, (T0335)I22.CB) [> 4.0743 = 6.7904 < 8.8276] w=0.9015 to align # Constraint # added constraint: constraint((T0335)L49.CB, (T0335)V62.CB) [> 3.4438 = 5.7397 < 7.4616] w=0.7369 to align # Constraint # added constraint: constraint((T0335)M45.CB, (T0335)V62.CB) [> 3.7042 = 6.1737 < 8.0258] w=0.7369 to align # Constraint # added constraint: constraint((T0335)F41.CB, (T0335)I54.CB) [> 2.9939 = 4.9898 < 6.4868] w=0.6947 to align # Constraint # added constraint: constraint((T0335)R42.CB, (T0335)I54.CB) [> 3.9169 = 6.5282 < 8.4866] w=0.6935 to align # Constraint # added constraint: constraint((T0335)K53.CB, (T0335)V62.CB) [> 4.2222 = 7.0370 < 9.1481] w=0.6907 to align # Constraint # added constraint: constraint((T0335)K6.CB, (T0335)L33.CB) [> 3.7419 = 6.2365 < 8.1075] w=0.6294 to align # Constraint # added constraint: constraint((T0335)R9.CB, (T0335)L33.CB) [> 3.9211 = 6.5351 < 8.4956] w=0.6294 to align # Constraint # added constraint: constraint((T0335)I10.CB, (T0335)L33.CB) [> 2.8211 = 4.7018 < 6.1123] w=0.6294 to align # Constraint # added constraint: constraint((T0335)L13.CB, (T0335)Q30.CB) [> 2.7487 = 4.5811 < 5.9554] w=0.6294 to align # Constraint # added constraint: constraint((T0335)T48.CB, (T0335)V62.CB) [> 2.9218 = 4.8696 < 6.3305] w=0.6216 to align # Constraint # added constraint: constraint((T0335)A17.CB, (T0335)Q30.CB) [> 3.9894 = 6.6491 < 8.6438] w=0.5985 to align # Constraint # added constraint: constraint((T0335)A14.CB, (T0335)Q30.CB) [> 4.2631 = 7.1052 < 9.2368] w=0.5985 to align # Constraint # added constraint: constraint((T0335)I10.CB, (T0335)R34.CB) [> 4.1391 = 6.8985 < 8.9681] w=0.5985 to align # Constraint # added constraint: constraint((T0335)K6.CB, (T0335)E36.CB) [> 4.2116 = 7.0194 < 9.1252] w=0.5985 to align # Constraint # added constraint: constraint((T0335)D56.CB, (T0335)K66.CB) [> 2.9507 = 4.9178 < 6.3932] w=0.5930 to align # Constraint # added constraint: constraint((T0335)T48.CB, (T0335)K66.CB) [> 3.9473 = 6.5788 < 8.5525] w=0.5907 to align # Constraint # added constraint: constraint((T0335)A17.CB, (T0335)M45.CB) [> 4.7169 = 7.8616 < 10.2201] w=0.5560 to align # Constraint # added constraint: constraint((T0335)A14.CB, (T0335)M45.CB) [> 4.3943 = 7.3238 < 9.5209] w=0.5560 to align # Constraint # added constraint: constraint((T0335)L13.CB, (T0335)L49.CB) [> 4.6454 = 7.7423 < 10.0650] w=0.5560 to align # Constraint # added constraint: constraint((T0335)L13.CB, (T0335)T48.CB) [> 3.5000 = 5.8334 < 7.5834] w=0.5560 to align # Constraint # added constraint: constraint((T0335)I10.CB, (T0335)L49.CB) [> 4.0064 = 6.6773 < 8.6805] w=0.5560 to align # Constraint # added constraint: constraint((T0335)R9.CB, (T0335)L49.CB) [> 4.6411 = 7.7352 < 10.0558] w=0.5560 to align # Constraint # added constraint: constraint((T0335)L38.CB, (T0335)I54.CB) [> 4.2011 = 7.0018 < 9.1023] w=0.4948 to align # Constraint # added constraint: constraint((T0335)M45.CB, (T0335)I54.CB) [> 4.2726 = 7.1209 < 9.2572] w=0.4897 to align # Constraint # added constraint: constraint((T0335)E26.CB, (T0335)G40.CA) [> 4.1513 = 6.9188 < 8.9944] w=0.4323 to align # Constraint # added constraint: constraint((T0335)I10.CB, (T0335)I54.CB) [> 4.5511 = 7.5851 < 9.8607] w=0.3915 to align # Constraint # added constraint: constraint((T0335)K6.CB, (T0335)V52.CB) [> 3.9709 = 6.6182 < 8.6037] w=0.3915 to align # Constraint # added constraint: constraint((T0335)R42.CB, (T0335)V52.CB) [> 4.1743 = 6.9572 < 9.0444] w=0.3906 to align # Constraint # added constraint: constraint((T0335)K6.CB, (T0335)Y37.CB) [> 4.5711 = 7.6184 < 9.9039] w=0.3262 to align # Constraint # added constraint: constraint((T0335)S51.CB, (T0335)N60.CB) [> 2.9941 = 4.9901 < 6.4871] w=0.3156 to align # Constraint # added constraint: constraint((T0335)A14.CB, (T0335)F41.CB) [> 4.7807 = 7.9678 < 10.3581] w=0.3092 to align # Constraint # added constraint: constraint((T0335)L38.CB, (T0335)K68.CB) [> 3.2863 = 5.4772 < 7.1204] w=0.3084 to align # Constraint # added constraint: constraint((T0335)L38.CB, (T0335)P64.CB) [> 3.1863 = 5.3104 < 6.9036] w=0.3084 to align # Constraint # added constraint: constraint((T0335)I7.CB, (T0335)L33.CB) [> 4.6490 = 7.7484 < 10.0729] w=0.3031 to align # Constraint # added constraint: constraint((T0335)Y37.CB, (T0335)L78.CB) [> 4.1024 = 6.8373 < 8.8884] w=0.2981 to align # Constraint # added constraint: constraint((T0335)S44.CB, (T0335)I54.CB) [> 3.2884 = 5.4807 < 7.1249] w=0.2981 to align # Constraint # added constraint: constraint((T0335)T48.CB, (T0335)T63.CB) [> 4.3948 = 7.3247 < 9.5222] w=0.2957 to align # Constraint # added constraint: constraint((T0335)V52.CB, (T0335)V62.CB) [> 4.3100 = 7.1833 < 9.3382] w=0.2957 to align # Constraint # added constraint: constraint((T0335)V52.CB, (T0335)T63.CB) [> 3.9014 = 6.5023 < 8.4529] w=0.2957 to align # Constraint # added constraint: constraint((T0335)I10.CB, (T0335)Y37.CB) [> 3.8771 = 6.4618 < 8.4004] w=0.2953 to align # Constraint # added constraint: constraint((T0335)I7.CB, (T0335)Y37.CB) [> 4.5545 = 7.5908 < 9.8680] w=0.2953 to align # Constraint # added constraint: constraint((T0335)I54.CB, (T0335)E70.CB) [> 3.0578 = 5.0964 < 6.6253] w=0.2924 to align # Constraint # added constraint: constraint((T0335)M45.CB, (T0335)I55.CB) [> 3.6107 = 6.0178 < 7.8231] w=0.1366 to align # Constraint # added constraint: constraint((T0335)I22.CB, (T0335)F41.CB) [> 4.6220 = 7.7033 < 10.0143] w=0.1366 to align # Constraint # added constraint: constraint((T0335)K46.CB, (T0335)L67.CB) [> 3.2074 = 5.3457 < 6.9495] w=0.1153 to align # Constraint # added constraint: constraint((T0335)R42.CB, (T0335)D56.CB) [> 2.7570 = 4.5950 < 5.9736] w=0.1031 to align # Constraint # added constraint: constraint((T0335)N11.CB, (T0335)I22.CB) [> 3.8720 = 6.4533 < 8.3892] w=0.0986 to align # Constraint # added constraint: constraint((T0335)E12.CB, (T0335)I22.CB) [> 3.4024 = 5.6707 < 7.3719] w=0.0986 to align # Constraint # added constraint: constraint((T0335)F41.CB, (T0335)V52.CB) [> 4.1272 = 6.8787 < 8.9423] w=0.0982 to align # Constraint # added constraint: constraint((T0335)R42.CB, (T0335)S51.CB) [> 4.7328 = 7.8880 < 10.2544] w=0.0982 to align # Constraint # added constraint: constraint((T0335)I7.CB, (T0335)L67.CB) [> 3.7931 = 6.3219 < 8.2185] w=0.0103 to align # Constraint # added constraint: constraint((T0335)I7.CB, (T0335)H77.CB) [> 3.9033 = 6.5055 < 8.4571] w=0.0103 to align # Constraint # added constraint: constraint((T0335)N11.CB, (T0335)E70.CB) [> 4.6740 = 7.7900 < 10.1270] w=0.0103 to align # Constraint # added constraint: constraint((T0335)N11.CB, (T0335)H77.CB) [> 4.7153 = 7.8588 < 10.2165] w=0.0103 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0335/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0335/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # Found a chain break before 41 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 39 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 28 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 Skipped atom 255, because occupancy 1 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 257, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 259, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 261, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 263, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 39 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 9 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 33 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 11 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 39 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 6 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 35 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Metaserver mode NUMB_ALIGNS: 248 model score 2.2526 model score 2.0488 model score 2.1752 model score 1.9289 model score 2.0153 model score 2.0828 model score 2.0806 model score 2.0922 model score 1.6036 model score 2.0787 model score 1.2925 model score 2.0665 model score 0.7425 model score 1.7107 model score 0.5143 model score 1.7459 model score 1.7083 model score 0.7425 model score 0.5143 model score 0.5434 model score 0.6706 model score 0.4532 model score 1.7040 model score 1.1807 model score 1.0028 model score 1.8093 model score 1.8293 model score 1.2423 model score 1.3125 model score 2.7425 model score 1.7387 model score 1.9857 model score 1.1631 model score 1.5057 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.7272 model score 1.0289 model score 2.5325 model score 2.4379 model score 1.0142 model score 1.4554 model score 1.5285 model score 1.0695 model score 1.2867 model score 1.1338 model score 1.6802 model score 1.6321 model score 1.8078 model score 2.0122 model score 2.0886 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.6783 model score 1.9391 model score 1.6121 model score 1.9606 model score 1.9263 model score 2.0793 model score 1.1810 model score 1.4342 model score 1.8216 model score 2.1490 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.4659 model score 1.5702 model score 1.4414 model score 2.4767 model score 1.8791 model score 1.8957 model score 1.8703 model score 1.7743 model score 1.9807 model score 2.1314 model score 1.7493 model score 2.7437 model score 2.3564 model score 1.6073 model score 1.7040 model score 1.7040 model score 1.7040 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.6797 model score 1.7498 model score 1.4146 model score 1.7261 model score 1.8205 model score 1.7157 model score 2.2762 model score 2.0706 model score 1.7876 model score 1.8012 model score 1.4062 model score 1.8924 model score 1.6152 model score 2.4923 model score 1.8556 model score 1.0796 model score 1.3410 model score 1.1365 model score 0.9395 model score 1.1212 model score 1.9453 model score 1.8048 model score 1.4047 model score 1.2049 model score 2.0514 model score 1.5563 model score 0.8046 model score 0.8679 model score 0.9861 model score 1.0874 model score 0.7457 model score 1.2689 model score 0.9861 model score 1.8463 model score 0.8811 model score 1.5146 model score 0.5868 model score 1.2509 model score 0.6767 model score 1.8174 model score 0.7048 model score 1.1589 model score 1.3148 model score 1.1917 model score 1.3120 model score 1.3552 model score 0.9915 model score 1.2077 model score 0.7048 model score 0.7286 model score 2.2226 model score 2.4653 model score 1.5426 model score 1.2594 model score 1.2395 model score 1.1690 model score 1.4131 model score 1.2472 model score 1.2831 model score 1.4144 model score 0.8982 model score 1.4510 model score 0.8973 model score 1.5946 model score 1.1834 model score 1.2266 model score 1.4000 model score 0.6767 model score 0.8512 model score 0.7048 model score 0.8278 model score 0.5868 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.1811 model score 1.4666 model score 1.0280 model score 1.2773 model score 0.9141 model score 1.2395 model score 1.3706 model score 1.2069 model score 1.4285 model score 1.7280 model score 1.2395 model score 1.4491 model score 1.2037 model score 1.0371 model score 1.2881 model score 1.9848 model score 1.3426 model score 0.9980 model score 1.4611 model score 1.2751 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.3400 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.3655 model score 0.3803 model score 0.4021 model score 0.4941 model score 0.7012 model score 1.4311 model score 2.1156 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2903 model score 1.8105 model score 1.8361 model score 1.6600 model score 1.3178 model score 1.3434 model score 1.4216 model score 1.6380 model score 1.6026 model score 1.3640 model score 1.7822 model score 1.9576 model score 1.5584 model score 2.1732 model score 1.5584 model score 1.0197 model score 1.9453 model score 1.9488 model score 1.9678 model score 1.1335 model score 2.2296 model score 1.1066 model score 1.9941 weight: 0.2858 eval: 2.2526 min: 0.3655 max: 2.7437 weight: 0.3630 eval: 2.0488 min: 0.3655 max: 2.7437 weight: 0.3152 eval: 2.1752 min: 0.3655 max: 2.7437 weight: 0.4083 eval: 1.9289 min: 0.3655 max: 2.7437 weight: 0.3757 eval: 2.0153 min: 0.3655 max: 2.7437 weight: 0.3501 eval: 2.0828 min: 0.3655 max: 2.7437 weight: 0.3509 eval: 2.0806 min: 0.3655 max: 2.7437 weight: 0.3466 eval: 2.0922 min: 0.3655 max: 2.7437 weight: 0.5314 eval: 1.6036 min: 0.3655 max: 2.7437 weight: 0.3517 eval: 2.0787 min: 0.3655 max: 2.7437 weight: 0.6492 eval: 1.2925 min: 0.3655 max: 2.7437 weight: 0.3563 eval: 2.0665 min: 0.3655 max: 2.7437 weight: 0.8573 eval: 0.7425 min: 0.3655 max: 2.7437 weight: 0.4909 eval: 1.7107 min: 0.3655 max: 2.7437 weight: 0.9437 eval: 0.5143 min: 0.3655 max: 2.7437 weight: 0.4776 eval: 1.7459 min: 0.3655 max: 2.7437 weight: 0.4919 eval: 1.7083 min: 0.3655 max: 2.7437 weight: 0.8573 eval: 0.7425 min: 0.3655 max: 2.7437 weight: 0.9437 eval: 0.5143 min: 0.3655 max: 2.7437 weight: 0.9327 eval: 0.5434 min: 0.3655 max: 2.7437 weight: 0.8845 eval: 0.6706 min: 0.3655 max: 2.7437 weight: 0.9668 eval: 0.4532 min: 0.3655 max: 2.7437 weight: 0.4935 eval: 1.7040 min: 0.3655 max: 2.7437 weight: 0.6915 eval: 1.1807 min: 0.3655 max: 2.7437 weight: 0.7588 eval: 1.0028 min: 0.3655 max: 2.7437 weight: 0.4536 eval: 1.8093 min: 0.3655 max: 2.7437 weight: 0.4461 eval: 1.8293 min: 0.3655 max: 2.7437 weight: 0.6682 eval: 1.2423 min: 0.3655 max: 2.7437 weight: 0.6416 eval: 1.3125 min: 0.3655 max: 2.7437 weight: 0.1005 eval: 2.7425 min: 0.3655 max: 2.7437 weight: 0.4803 eval: 1.7387 min: 0.3655 max: 2.7437 weight: 0.3869 eval: 1.9857 min: 0.3655 max: 2.7437 weight: 0.6982 eval: 1.1631 min: 0.3655 max: 2.7437 weight: 0.5685 eval: 1.5057 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.4847 eval: 1.7272 min: 0.3655 max: 2.7437 weight: 0.7489 eval: 1.0289 min: 0.3655 max: 2.7437 weight: 0.1799 eval: 2.5325 min: 0.3655 max: 2.7437 weight: 0.2157 eval: 2.4379 min: 0.3655 max: 2.7437 weight: 0.7545 eval: 1.0142 min: 0.3655 max: 2.7437 weight: 0.5875 eval: 1.4554 min: 0.3655 max: 2.7437 weight: 0.5599 eval: 1.5285 min: 0.3655 max: 2.7437 weight: 0.7336 eval: 1.0695 min: 0.3655 max: 2.7437 weight: 0.6514 eval: 1.2867 min: 0.3655 max: 2.7437 weight: 0.7093 eval: 1.1338 min: 0.3655 max: 2.7437 weight: 0.5025 eval: 1.6802 min: 0.3655 max: 2.7437 weight: 0.5207 eval: 1.6321 min: 0.3655 max: 2.7437 weight: 0.4542 eval: 1.8078 min: 0.3655 max: 2.7437 weight: 0.3768 eval: 2.0122 min: 0.3655 max: 2.7437 weight: 0.3479 eval: 2.0886 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.5032 eval: 1.6783 min: 0.3655 max: 2.7437 weight: 0.4045 eval: 1.9391 min: 0.3655 max: 2.7437 weight: 0.5283 eval: 1.6121 min: 0.3655 max: 2.7437 weight: 0.3964 eval: 1.9606 min: 0.3655 max: 2.7437 weight: 0.4094 eval: 1.9263 min: 0.3655 max: 2.7437 weight: 0.3514 eval: 2.0793 min: 0.3655 max: 2.7437 weight: 0.6914 eval: 1.1810 min: 0.3655 max: 2.7437 weight: 0.5956 eval: 1.4342 min: 0.3655 max: 2.7437 weight: 0.4490 eval: 1.8216 min: 0.3655 max: 2.7437 weight: 0.3251 eval: 2.1490 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.5836 eval: 1.4659 min: 0.3655 max: 2.7437 weight: 0.5441 eval: 1.5702 min: 0.3655 max: 2.7437 weight: 0.5929 eval: 1.4414 min: 0.3655 max: 2.7437 weight: 0.2011 eval: 2.4767 min: 0.3655 max: 2.7437 weight: 0.4272 eval: 1.8791 min: 0.3655 max: 2.7437 weight: 0.4209 eval: 1.8957 min: 0.3655 max: 2.7437 weight: 0.4305 eval: 1.8703 min: 0.3655 max: 2.7437 weight: 0.4669 eval: 1.7743 min: 0.3655 max: 2.7437 weight: 0.3888 eval: 1.9807 min: 0.3655 max: 2.7437 weight: 0.3317 eval: 2.1314 min: 0.3655 max: 2.7437 weight: 0.4763 eval: 1.7493 min: 0.3655 max: 2.7437 weight: 0.1000 eval: 2.7437 min: 0.3655 max: 2.7437 weight: 0.2466 eval: 2.3564 min: 0.3655 max: 2.7437 weight: 0.5300 eval: 1.6073 min: 0.3655 max: 2.7437 weight: 0.4935 eval: 1.7040 min: 0.3655 max: 2.7437 weight: 0.4935 eval: 1.7040 min: 0.3655 max: 2.7437 weight: 0.4935 eval: 1.7040 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.5026 eval: 1.6797 min: 0.3655 max: 2.7437 weight: 0.4761 eval: 1.7498 min: 0.3655 max: 2.7437 weight: 0.6030 eval: 1.4146 min: 0.3655 max: 2.7437 weight: 0.4851 eval: 1.7261 min: 0.3655 max: 2.7437 weight: 0.4494 eval: 1.8205 min: 0.3655 max: 2.7437 weight: 0.4890 eval: 1.7157 min: 0.3655 max: 2.7437 weight: 0.2769 eval: 2.2762 min: 0.3655 max: 2.7437 weight: 0.3547 eval: 2.0706 min: 0.3655 max: 2.7437 weight: 0.4618 eval: 1.7876 min: 0.3655 max: 2.7437 weight: 0.4567 eval: 1.8012 min: 0.3655 max: 2.7437 weight: 0.6061 eval: 1.4062 min: 0.3655 max: 2.7437 weight: 0.4222 eval: 1.8924 min: 0.3655 max: 2.7437 weight: 0.5271 eval: 1.6152 min: 0.3655 max: 2.7437 weight: 0.1951 eval: 2.4923 min: 0.3655 max: 2.7437 weight: 0.4361 eval: 1.8556 min: 0.3655 max: 2.7437 weight: 0.7298 eval: 1.0796 min: 0.3655 max: 2.7437 weight: 0.6308 eval: 1.3410 min: 0.3655 max: 2.7437 weight: 0.7082 eval: 1.1365 min: 0.3655 max: 2.7437 weight: 0.7828 eval: 0.9395 min: 0.3655 max: 2.7437 weight: 0.7140 eval: 1.1212 min: 0.3655 max: 2.7437 weight: 0.4021 eval: 1.9453 min: 0.3655 max: 2.7437 weight: 0.4553 eval: 1.8048 min: 0.3655 max: 2.7437 weight: 0.6067 eval: 1.4047 min: 0.3655 max: 2.7437 weight: 0.6823 eval: 1.2049 min: 0.3655 max: 2.7437 weight: 0.3620 eval: 2.0514 min: 0.3655 max: 2.7437 weight: 0.5494 eval: 1.5563 min: 0.3655 max: 2.7437 weight: 0.8338 eval: 0.8046 min: 0.3655 max: 2.7437 weight: 0.8099 eval: 0.8679 min: 0.3655 max: 2.7437 weight: 0.7652 eval: 0.9861 min: 0.3655 max: 2.7437 weight: 0.7268 eval: 1.0874 min: 0.3655 max: 2.7437 weight: 0.8561 eval: 0.7457 min: 0.3655 max: 2.7437 weight: 0.6581 eval: 1.2689 min: 0.3655 max: 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weight: 0.2054 eval: 2.4653 min: 0.3655 max: 2.7437 weight: 0.5545 eval: 1.5426 min: 0.3655 max: 2.7437 weight: 0.6617 eval: 1.2594 min: 0.3655 max: 2.7437 weight: 0.6692 eval: 1.2395 min: 0.3655 max: 2.7437 weight: 0.6959 eval: 1.1690 min: 0.3655 max: 2.7437 weight: 0.6036 eval: 1.4131 min: 0.3655 max: 2.7437 weight: 0.6663 eval: 1.2472 min: 0.3655 max: 2.7437 weight: 0.6528 eval: 1.2831 min: 0.3655 max: 2.7437 weight: 0.6031 eval: 1.4144 min: 0.3655 max: 2.7437 weight: 0.7984 eval: 0.8982 min: 0.3655 max: 2.7437 weight: 0.5892 eval: 1.4510 min: 0.3655 max: 2.7437 weight: 0.7988 eval: 0.8973 min: 0.3655 max: 2.7437 weight: 0.5349 eval: 1.5946 min: 0.3655 max: 2.7437 weight: 0.6905 eval: 1.1834 min: 0.3655 max: 2.7437 weight: 0.6741 eval: 1.2266 min: 0.3655 max: 2.7437 weight: 0.6085 eval: 1.4000 min: 0.3655 max: 2.7437 weight: 0.8822 eval: 0.6767 min: 0.3655 max: 2.7437 weight: 0.8162 eval: 0.8512 min: 0.3655 max: 2.7437 weight: 0.8716 eval: 0.7048 min: 0.3655 max: 2.7437 weight: 0.8250 eval: 0.8278 min: 0.3655 max: 2.7437 weight: 0.9163 eval: 0.5868 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6914 eval: 1.1811 min: 0.3655 max: 2.7437 weight: 0.5833 eval: 1.4666 min: 0.3655 max: 2.7437 weight: 0.7493 eval: 1.0280 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2773 min: 0.3655 max: 2.7437 weight: 0.7924 eval: 0.9141 min: 0.3655 max: 2.7437 weight: 0.6692 eval: 1.2395 min: 0.3655 max: 2.7437 weight: 0.6196 eval: 1.3706 min: 0.3655 max: 2.7437 weight: 0.6816 eval: 1.2069 min: 0.3655 max: 2.7437 weight: 0.5977 eval: 1.4285 min: 0.3655 max: 2.7437 weight: 0.4844 eval: 1.7280 min: 0.3655 max: 2.7437 weight: 0.6692 eval: 1.2395 min: 0.3655 max: 2.7437 weight: 0.5899 eval: 1.4491 min: 0.3655 max: 2.7437 weight: 0.6828 eval: 1.2037 min: 0.3655 max: 2.7437 weight: 0.7459 eval: 1.0371 min: 0.3655 max: 2.7437 weight: 0.6509 eval: 1.2881 min: 0.3655 max: 2.7437 weight: 0.3872 eval: 1.9848 min: 0.3655 max: 2.7437 weight: 0.6302 eval: 1.3426 min: 0.3655 max: 2.7437 weight: 0.7607 eval: 0.9980 min: 0.3655 max: 2.7437 weight: 0.5854 eval: 1.4611 min: 0.3655 max: 2.7437 weight: 0.6558 eval: 1.2751 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6312 eval: 1.3400 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 1.0000 eval: 0.3655 min: 0.3655 max: 2.7437 weight: 0.9944 eval: 0.3803 min: 0.3655 max: 2.7437 weight: 0.9861 eval: 0.4021 min: 0.3655 max: 2.7437 weight: 0.9513 eval: 0.4941 min: 0.3655 max: 2.7437 weight: 0.8729 eval: 0.7012 min: 0.3655 max: 2.7437 weight: 0.5967 eval: 1.4311 min: 0.3655 max: 2.7437 weight: 0.3377 eval: 2.1156 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6550 eval: 1.2771 min: 0.3655 max: 2.7437 weight: 0.6500 eval: 1.2903 min: 0.3655 max: 2.7437 weight: 0.4532 eval: 1.8105 min: 0.3655 max: 2.7437 weight: 0.4435 eval: 1.8361 min: 0.3655 max: 2.7437 weight: 0.5101 eval: 1.6600 min: 0.3655 max: 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Adding 2418 constraints to all2.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all2.constraints maxweight: 1.0000 Optimizing... Probability sum: -121.6773, CN propb: -121.6773 weights: 0.3146 constraints: 92 # command:Found ConstraintSet # PrintContacts align.constraints_meta02 Number of constraints in align2.constraints 92 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta02 Number of constraints in align2.constraints.bonus 92 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta02 Number of constraints in rejected2.constraints 2326 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta02 Number of constraints in rejected2.constraints.bonus 2326 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta02 Number of constraints in noncontact2.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta02 Number of constraints in noncontact2.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta02 Number of constraints in all2.constraints 2418 # command: