# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading dunbrack-2191.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 53157 examples # computed average trans backbone unit before proline from 2010 examples # computed average cis backbone unit from 97 examples # trans (non-proline) backbone unit: # CA= -2.2087 1.0126 -0.0030 # O= -0.1499 2.2440 0.0016 # C= -0.6889 1.1368 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 -0.0000 0.0000 # cis backbone unit: # CA= -0.1436 2.4534 -0.0002 # O= -2.0284 0.9742 0.0015 # C= -0.8018 1.0771 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4668 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2100 1.0631 -0.0014 # O= -0.1236 2.2458 0.0075 # C= -0.6872 1.1517 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading dunbrack-2191.atoms have 2191 chains in training database # Count of chains,residues,atoms: 2191,500310,3902258 # 493341 residues have no bad marker # 3226 residues lack atoms needed to compute omega # 1453 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 4 # HAS_OXT 1167 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 3052 # HAS_UNKNOWN_ATOMS 9 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 979 # NON_PLANAR_PEPTIDE 888 # BAD_PEPTIDE 2680 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-2191.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0335/ # command:# Making conformation for sequence T0335 numbered 1 through 85 Created new target T0335 from T0335.a2m # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0335/ # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0335//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0335/manyalignments-good-all.under or /projects/compbio/experiments/protein-predict/casp7/T0335//projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0335/manyalignments-good-all.under.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0335/manyalignments-good-all.under # reading script from file /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0335/manyalignments-good-all.under # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xhdA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1xhdA expands to /projects/compbio/data/pdb/1xhd.pdb.gz 1xhdA:Skipped atom 2, because occupancy 0.31 <= existing 0.690 in 1xhdA Skipped atom 4, because occupancy 0.310 <= existing 0.690 in 1xhdA Skipped atom 6, because occupancy 0.310 <= existing 0.690 in 1xhdA Skipped atom 8, because occupancy 0.310 <= existing 0.690 in 1xhdA Skipped atom 10, because occupancy 0.310 <= existing 0.690 in 1xhdA Skipped atom 12, because occupancy 0.310 <= existing 0.690 in 1xhdA Skipped atom 14, because occupancy 0.460 <= existing 0.540 in 1xhdA Skipped atom 16, because occupancy 0.460 <= existing 0.540 in 1xhdA Skipped atom 18, because occupancy 0.460 <= existing 0.540 in 1xhdA Skipped atom 20, because occupancy 0.460 <= existing 0.540 in 1xhdA Skipped atom 22, because occupancy 0.460 <= existing 0.540 in 1xhdA Skipped atom 24, because occupancy 0.460 <= existing 0.540 in 1xhdA Skipped atom 26, because occupancy 0.460 <= existing 0.540 in 1xhdA Skipped atom 28, because occupancy 0.460 <= existing 0.540 in 1xhdA Skipped atom 30, because occupancy 0.300 <= existing 0.700 in 1xhdA Skipped atom 32, because occupancy 0.300 <= existing 0.700 in 1xhdA Skipped atom 34, because occupancy 0.300 <= existing 0.700 in 1xhdA Skipped atom 36, because occupancy 0.300 <= existing 0.700 in 1xhdA Skipped atom 38, because occupancy 0.300 <= existing 0.700 in 1xhdA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 118, because occupancy 0.460 <= existing 0.540 in 1xhdA Skipped atom 120, because occupancy 0.460 <= existing 0.540 in 1xhdA Skipped atom 122, because occupancy 0.460 <= existing 0.540 in 1xhdA Skipped atom 124, because occupancy 0.460 <= existing 0.540 in 1xhdA Skipped atom 126, because occupancy 0.460 <= existing 0.540 in 1xhdA Skipped atom 161, because occupancy 0.500 <= existing 0.500 in 1xhdA Skipped atom 163, because occupancy 0.500 <= existing 0.500 in 1xhdA Skipped atom 295, because occupancy 0.440 <= existing 0.560 in 1xhdA Skipped atom 297, because occupancy 0.440 <= existing 0.560 in 1xhdA Skipped atom 299, because occupancy 0.440 <= existing 0.560 in 1xhdA Skipped atom 301, because occupancy 0.440 <= existing 0.560 in 1xhdA Skipped atom 303, because occupancy 0.440 <= existing 0.560 in 1xhdA Skipped atom 759, because occupancy 0.450 <= existing 0.550 in 1xhdA Skipped atom 761, because occupancy 0.450 <= existing 0.550 in 1xhdA Skipped atom 763, because occupancy 0.450 <= existing 0.550 in 1xhdA Skipped atom 765, because occupancy 0.450 <= existing 0.550 in 1xhdA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 973, because occupancy 0.490 <= existing 0.510 in 1xhdA Skipped atom 975, because occupancy 0.490 <= existing 0.510 in 1xhdA Skipped atom 1164, because occupancy 0.470 <= existing 0.530 in 1xhdA Skipped atom 1166, because occupancy 0.470 <= existing 0.530 in 1xhdA Skipped atom 1168, because occupancy 0.470 <= existing 0.530 in 1xhdA Skipped atom 1170, because occupancy 0.470 <= existing 0.530 in 1xhdA Skipped atom 1172, because occupancy 0.470 <= existing 0.530 in 1xhdA Skipped atom 1206, because occupancy 0.420 <= existing 0.580 in 1xhdA Skipped atom 1208, because occupancy 0.420 <= existing 0.580 in 1xhdA Skipped atom 1210, because occupancy 0.420 <= existing 0.580 in 1xhdA Skipped atom 1212, because occupancy 0.420 <= existing 0.580 in 1xhdA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0335 read from 1xhdA/merged-good-all-a2m # 1xhdA read from 1xhdA/merged-good-all-a2m # adding 1xhdA to template set # found chain 1xhdA in template set T0335 22 :ITEEEKAEQQKLRQEYLKGFRSSMKN 1xhdA 143 :LTAEDRKDMERIRTQYVEKGQYYKSL # choosing archetypes in rotamer library Number of specific fragments extracted= 1 number of extra gaps= 0 total=1 Number of alignments=1 # 1xhdA read from 1xhdA/merged-good-all-a2m # found chain 1xhdA in template set T0335 22 :ITEEEKAEQQKLRQEYLKGFRSSMKN 1xhdA 143 :LTAEDRKDMERIRTQYVEKGQYYKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=2 Number of alignments=2 # 1xhdA read from 1xhdA/merged-good-all-a2m # found chain 1xhdA in template set T0335 22 :ITEEEKAEQQKLRQEYLKGFRSSMKN 1xhdA 143 :LTAEDRKDMERIRTQYVEKGQYYKSL Number of specific fragments extracted= 1 number of extra gaps= 0 total=3 Number of alignments=3 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2au5A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2au5A expands to /projects/compbio/data/pdb/2au5.pdb.gz 2au5A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 15, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 17, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 19, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 21, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 23, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 25, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 27, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 29, because occupancy 0.500 <= existing 0.500 in 2au5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 379, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 381, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 383, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 385, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 387, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 389, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 391, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 393, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 395, because occupancy 0.500 <= existing 0.500 in 2au5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 569, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 571, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 573, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 575, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 577, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 579, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 581, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 583, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 585, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 625, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 627, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 629, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 631, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 633, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 635, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 637, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 639, because occupancy 0.500 <= existing 0.500 in 2au5A Skipped atom 641, because occupancy 0.500 <= existing 0.500 in 2au5A Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0335 read from 2au5A/merged-good-all-a2m # 2au5A read from 2au5A/merged-good-all-a2m # adding 2au5A to template set # found chain 2au5A in template set Warning: unaligning (T0335)K50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2au5A)S132 T0335 3 :SNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFR 2au5A 82 :LKGELARLIRLYFALAKDNLTENQESLYVDLFDKFTFLLL T0335 43 :SSMKNTL 2au5A 124 :DEFIMYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=5 Number of alignments=4 # 2au5A read from 2au5A/merged-good-all-a2m # found chain 2au5A in template set Warning: unaligning (T0335)K50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2au5A)S132 Warning: unaligning (T0335)S51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2au5A)S132 T0335 3 :SNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFR 2au5A 82 :LKGELARLIRLYFALAKDNLTENQESLYVDLFDKFTFLLL T0335 43 :SSMKNTL 2au5A 124 :DEFIMYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=7 Number of alignments=5 # 2au5A read from 2au5A/merged-good-all-a2m # found chain 2au5A in template set Warning: unaligning (T0335)K50 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (2au5A)S132 Warning: unaligning (T0335)S51 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (2au5A)S132 T0335 4 :NAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFR 2au5A 83 :KGELARLIRLYFALAKDNLTENQESLYVDLFDKFTFLLL T0335 43 :SSMKNTL 2au5A 124 :DEFIMYL Number of specific fragments extracted= 2 number of extra gaps= 1 total=9 Number of alignments=6 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1t95A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1t95A expands to /projects/compbio/data/pdb/1t95.pdb.gz 1t95A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0335 read from 1t95A/merged-good-all-a2m # 1t95A read from 1t95A/merged-good-all-a2m # adding 1t95A to template set # found chain 1t95A in template set Warning: unaligning (T0335)I55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t95A)D119 Warning: unaligning (T0335)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t95A)D119 Warning: unaligning (T0335)E58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t95A)T122 Warning: unaligning (T0335)G59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t95A)T122 Warning: unaligning (T0335)N60 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t95A)N123 T0335 3 :SNAKIARI 1t95A 65 :SVDELRKI T0335 11 :NELAAKAKAG 1t95A 79 :FEIARKIILE T0335 21 :VITEEEKAEQ 1t95A 92 :QITAEQRREM T0335 31 :QKLRQEYLKGFRSS 1t95A 103 :EAKRKQIINFISRN T0335 54 :I 1t95A 117 :T T0335 57 :P 1t95A 120 :P T0335 61 :DV 1t95A 124 :AP T0335 63 :TPEKLKREQRNNKLHLEHH 1t95A 127 :PPSRIERALEEAKVHIDIF Number of specific fragments extracted= 8 number of extra gaps= 2 total=17 Number of alignments=7 # 1t95A read from 1t95A/merged-good-all-a2m # found chain 1t95A in template set Warning: unaligning (T0335)I55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t95A)D119 Warning: unaligning (T0335)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t95A)D119 Warning: unaligning (T0335)E58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t95A)T122 Warning: unaligning (T0335)G59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t95A)T122 Warning: unaligning (T0335)N60 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t95A)N123 T0335 3 :SNAKIARI 1t95A 65 :SVDELRKI T0335 11 :NELAAKAKAG 1t95A 79 :FEIARKIILE T0335 21 :VITEEEKAE 1t95A 92 :QITAEQRRE T0335 30 :QQKLRQEYLKGFRSS 1t95A 102 :LEAKRKQIINFISRN T0335 54 :I 1t95A 117 :T T0335 57 :P 1t95A 120 :P T0335 61 :DV 1t95A 124 :AP T0335 63 :TPEKLKREQRNNKLHLEHH 1t95A 127 :PPSRIERALEEAKVHIDIF Number of specific fragments extracted= 8 number of extra gaps= 2 total=25 Number of alignments=8 # 1t95A read from 1t95A/merged-good-all-a2m # found chain 1t95A in template set Warning: unaligning (T0335)I55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t95A)D119 Warning: unaligning (T0335)D56 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t95A)D119 Warning: unaligning (T0335)E58 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1t95A)T122 Warning: unaligning (T0335)G59 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t95A)T122 Warning: unaligning (T0335)N60 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1t95A)N123 T0335 3 :SNAKIARI 1t95A 65 :SVDELRKI T0335 11 :NELAAKAKAG 1t95A 79 :FEIARKIILE T0335 21 :VITEEEKAEQ 1t95A 92 :QITAEQRREM T0335 31 :QKLRQEYLKGFRSS 1t95A 103 :EAKRKQIINFISRN T0335 54 :I 1t95A 117 :T T0335 57 :P 1t95A 120 :P T0335 61 :DV 1t95A 124 :AP T0335 63 :TPEKLKREQRNNKLHLEHHH 1t95A 127 :PPSRIERALEEAKVHIDIFK Number of specific fragments extracted= 8 number of extra gaps= 2 total=33 Number of alignments=9 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2amyA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2amyA expands to /projects/compbio/data/pdb/2amy.pdb.gz 2amyA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 359, because occupancy 0.350 <= existing 0.650 in 2amyA Skipped atom 361, because occupancy 0.350 <= existing 0.650 in 2amyA Skipped atom 363, because occupancy 0.350 <= existing 0.650 in 2amyA Skipped atom 365, because occupancy 0.350 <= existing 0.650 in 2amyA Skipped atom 367, because occupancy 0.350 <= existing 0.650 in 2amyA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0335 read from 2amyA/merged-good-all-a2m # 2amyA read from 2amyA/merged-good-all-a2m # adding 2amyA to template set # found chain 2amyA in template set T0335 3 :SNAKIARINELAAKAKA 2amyA 92 :GEALIQDLINYCLSYIA T0335 20 :GVITEEEKAEQQKLRQE 2amyA 134 :RSCSQEERIEFYELDKK T0335 37 :YLKGFRSSMKNTLKSVKI 2amyA 153 :IRQKFVADLRKEFAGKGL Number of specific fragments extracted= 3 number of extra gaps= 0 total=36 Number of alignments=10 # 2amyA read from 2amyA/merged-good-all-a2m # found chain 2amyA in template set T0335 3 :SNAKIARINELAAKAKA 2amyA 92 :GEALIQDLINYCLSYIA T0335 20 :GVITEEEKAEQQKLRQE 2amyA 134 :RSCSQEERIEFYELDKK T0335 37 :YLKGFRSSMKNTLKSVKII 2amyA 153 :IRQKFVADLRKEFAGKGLT Number of specific fragments extracted= 3 number of extra gaps= 0 total=39 Number of alignments=11 # 2amyA read from 2amyA/merged-good-all-a2m # found chain 2amyA in template set T0335 3 :SNAKIARINELAAKAKAG 2amyA 92 :GEALIQDLINYCLSYIAK T0335 21 :VITEEEKAEQQKLRQE 2amyA 135 :SCSQEERIEFYELDKK T0335 37 :YLKGFRSSMKNTLKSVKIID 2amyA 153 :IRQKFVADLRKEFAGKGLTF Number of specific fragments extracted= 3 number of extra gaps= 0 total=42 Number of alignments=12 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1il1A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0335/1il1A/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0335/1il1A/merged-good-all-a2m.gz for input Trying 1il1A/merged-good-all-a2m Error: Couldn't open file 1il1A/merged-good-all-a2m or 1il1A/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1v3hA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0335 read from 1v3hA/merged-good-all-a2m # 1v3hA read from 1v3hA/merged-good-all-a2m # found chain 1v3hA in training set T0335 54 :IIDPEGNDVTPEKLKREQRN 1v3hA 22 :VVNVDNVFEDPDGLKEQLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=43 Number of alignments=13 # 1v3hA read from 1v3hA/merged-good-all-a2m # found chain 1v3hA in training set T0335 55 :IDPEGNDVTPEKLKREQRN 1v3hA 23 :VNVDNVFEDPDGLKEQLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=44 # 1v3hA read from 1v3hA/merged-good-all-a2m # found chain 1v3hA in training set T0335 54 :IIDPEGNDVTPEKLKREQR 1v3hA 22 :VVNVDNVFEDPDGLKEQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=45 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1aj4/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1aj4 expands to /projects/compbio/data/pdb/1aj4.pdb.gz 1aj4:Warning: there is no chain 1aj4 will retry with 1aj4A # T0335 read from 1aj4/merged-good-all-a2m # 1aj4 read from 1aj4/merged-good-all-a2m # adding 1aj4 to template set # found chain 1aj4 in template set T0335 16 :KAKAGVITEEEKA 1aj4 6 :KAAVEQLTEEQKN T0335 40 :GFRSSMKNTLKSVK 1aj4 19 :EFKAAFDIFVLGAE T0335 54 :IIDPE 1aj4 35 :SISTK T0335 59 :GNDVTPEKLKREQRNNK 1aj4 49 :GQNPTPEELQEMIDEVD Number of specific fragments extracted= 4 number of extra gaps= 0 total=49 Number of alignments=14 # 1aj4 read from 1aj4/merged-good-all-a2m # found chain 1aj4 in template set T0335 17 :AKAGVITEEEKA 1aj4 7 :AAVEQLTEEQKN T0335 40 :GFRSSMKNTLKSVK 1aj4 19 :EFKAAFDIFVLGAE T0335 54 :IIDPE 1aj4 35 :SISTK T0335 59 :GNDVTPEKLKREQRNNKL 1aj4 49 :GQNPTPEELQEMIDEVDE Number of specific fragments extracted= 4 number of extra gaps= 0 total=53 Number of alignments=15 # 1aj4 read from 1aj4/merged-good-all-a2m # found chain 1aj4 in template set T0335 17 :AKAGVITEEEKA 1aj4 7 :AAVEQLTEEQKN T0335 40 :GFRSSMKNTLKSVK 1aj4 19 :EFKAAFDIFVLGAE T0335 55 :IDPE 1aj4 36 :ISTK T0335 59 :GNDVTPEKLKREQRNN 1aj4 49 :GQNPTPEELQEMIDEV T0335 78 :LEHHH 1aj4 65 :DEDGS Number of specific fragments extracted= 5 number of extra gaps= 0 total=58 Number of alignments=16 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f47B/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1f47B expands to /projects/compbio/data/pdb/1f47.pdb.gz 1f47B:# T0335 read from 1f47B/merged-good-all-a2m # 1f47B read from 1f47B/merged-good-all-a2m # adding 1f47B to template set # found chain 1f47B in template set T0335 26 :EKA 1f47B 94 :ELQ T0335 33 :LRQEYLKGFR 1f47B 97 :LFKLMLQSAQ T0335 44 :SMKNTL 1f47B 107 :HIADEV T0335 51 :SVKIIDPEGNDVTPEKLKREQRNNKLHLE 1f47B 113 :GGVVLDDQRRMMTPQKLREYQDIIREVKD Number of specific fragments extracted= 4 number of extra gaps= 0 total=62 Number of alignments=17 # 1f47B read from 1f47B/merged-good-all-a2m # found chain 1f47B in template set T0335 33 :LRQEYLKGF 1f47B 97 :LFKLMLQSA T0335 43 :SSMKNTL 1f47B 106 :QHIADEV T0335 51 :SVKIIDPEGNDVTPEKLKREQRNNKL 1f47B 113 :GGVVLDDQRRMMTPQKLREYQDIIRE Number of specific fragments extracted= 3 number of extra gaps= 0 total=65 Number of alignments=18 # 1f47B read from 1f47B/merged-good-all-a2m # found chain 1f47B in template set T0335 32 :KLRQEYLKGFR 1f47B 96 :QLFKLMLQSAQ T0335 44 :SMKNTL 1f47B 107 :HIADEV T0335 51 :SVKIIDPEGNDVTPEKLKREQR 1f47B 113 :GGVVLDDQRRMMTPQKLREYQD Number of specific fragments extracted= 3 number of extra gaps= 0 total=68 Number of alignments=19 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fueA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2fueA expands to /projects/compbio/data/pdb/2fue.pdb.gz 2fueA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1384, because occupancy 0.500 <= existing 0.500 in 2fueA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1388, because occupancy 0.500 <= existing 0.500 in 2fueA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1390, because occupancy 0.500 <= existing 0.500 in 2fueA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1392, because occupancy 0.500 <= existing 0.500 in 2fueA Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Skipped atom 1394, because occupancy 0.500 <= existing 0.500 in 2fueA Skipped atom 1907, because occupancy 0.500 <= existing 0.500 in 2fueA Skipped atom 1909, because occupancy 0.500 <= existing 0.500 in 2fueA Skipped atom 1911, because occupancy 0.500 <= existing 0.500 in 2fueA Skipped atom 1913, because occupancy 0.500 <= existing 0.500 in 2fueA Skipped atom 1915, because occupancy 0.500 <= existing 0.500 in 2fueA Skipped atom 1917, because occupancy 0.500 <= existing 0.500 in 2fueA Skipped atom 1919, because occupancy 0.500 <= existing 0.500 in 2fueA Skipped atom 1921, because occupancy 0.500 <= existing 0.500 in 2fueA Skipped atom 1923, because occupancy 0.500 <= existing 0.500 in 2fueA Skipped atom 1925, because occupancy 0.500 <= existing 0.500 in 2fueA Skipped atom 1927, because occupancy 0.500 <= existing 0.500 in 2fueA # T0335 read from 2fueA/merged-good-all-a2m # 2fueA read from 2fueA/merged-good-all-a2m # adding 2fueA to template set # found chain 2fueA in template set T0335 2 :ISNAKIARINELAAKAKAG 2fueA 100 :LGEELLQDLINFCLSYMAL T0335 21 :VITEEEKAEQQKLRQE 2fueA 144 :SCTLEERIEFSELDKK T0335 37 :YLKGFRSSMKNTLKS 2fueA 162 :IREKFVEALKTEFAG Number of specific fragments extracted= 3 number of extra gaps= 0 total=71 Number of alignments=20 # 2fueA read from 2fueA/merged-good-all-a2m # found chain 2fueA in template set T0335 3 :SNAKIARINELAAKAKAG 2fueA 101 :GEELLQDLINFCLSYMAL T0335 21 :VITEEEKAEQQKLRQE 2fueA 144 :SCTLEERIEFSELDKK T0335 37 :YLKGFRSSMKNTLKS 2fueA 162 :IREKFVEALKTEFAG Number of specific fragments extracted= 3 number of extra gaps= 0 total=74 Number of alignments=21 # 2fueA read from 2fueA/merged-good-all-a2m # found chain 2fueA in template set T0335 3 :SNAKIARINELAAKAKAG 2fueA 101 :GEELLQDLINFCLSYMAL T0335 21 :VITEEEKAEQQKLRQE 2fueA 144 :SCTLEERIEFSELDKK T0335 37 :YLKGFRSSMKNTLKSVKII 2fueA 162 :IREKFVEALKTEFAGKGLR Number of specific fragments extracted= 3 number of extra gaps= 0 total=77 Number of alignments=22 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1lj9A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1lj9A expands to /projects/compbio/data/pdb/1lj9.pdb.gz 1lj9A:# T0335 read from 1lj9A/merged-good-all-a2m # 1lj9A read from 1lj9A/merged-good-all-a2m # adding 1lj9A to template set # found chain 1lj9A in template set T0335 5 :AKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKN 1lj9A 99 :PIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWEF Number of specific fragments extracted= 1 number of extra gaps= 0 total=78 Number of alignments=23 # 1lj9A read from 1lj9A/merged-good-all-a2m # found chain 1lj9A in template set T0335 5 :AKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKNTLK 1lj9A 99 :PIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWEFVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=79 Number of alignments=24 # 1lj9A read from 1lj9A/merged-good-all-a2m # found chain 1lj9A in template set T0335 5 :AKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKNTLK 1lj9A 99 :PIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWEFVKK Number of specific fragments extracted= 1 number of extra gaps= 0 total=80 Number of alignments=25 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1gzqA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1gzqA expands to /projects/compbio/data/pdb/1gzq.pdb.gz 1gzqA:# T0335 read from 1gzqA/merged-good-all-a2m # 1gzqA read from 1gzqA/merged-good-all-a2m # adding 1gzqA to template set # found chain 1gzqA in template set T0335 21 :VITEEEKAEQQKLRQEYLKGFRSSMKNTLKS 1gzqA 57 :NFSDKEVAELEEIFRVYIFGFAREVQDFAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=81 Number of alignments=26 # 1gzqA read from 1gzqA/merged-good-all-a2m # found chain 1gzqA in template set T0335 21 :VITEEEKAEQQKLRQEYLKGFRSSMKNTLKS 1gzqA 57 :NFSDKEVAELEEIFRVYIFGFAREVQDFAGD Number of specific fragments extracted= 1 number of extra gaps= 0 total=82 Number of alignments=27 # 1gzqA read from 1gzqA/merged-good-all-a2m # found chain 1gzqA in template set T0335 21 :VITEEEKAEQQKLRQEYLKGFRSSMKNTLKSV 1gzqA 57 :NFSDKEVAELEEIFRVYIFGFAREVQDFAGDF Number of specific fragments extracted= 1 number of extra gaps= 0 total=83 Number of alignments=28 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1ap4/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1ap4 expands to /projects/compbio/data/pdb/1ap4.pdb.gz 1ap4:Warning: there is no chain 1ap4 will retry with 1ap4A # T0335 read from 1ap4/merged-good-all-a2m # 1ap4 read from 1ap4/merged-good-all-a2m # adding 1ap4 to template set # found chain 1ap4 in template set T0335 6 :K 1ap4 5 :Y T0335 16 :KAKAGVITEEEKA 1ap4 6 :KAAVEQLTEEQKN T0335 40 :GFRSSMKNTLKSV 1ap4 19 :EFKAAFDIFVLGA T0335 58 :EGNDVTPEKLKREQRNNKLHLEH 1ap4 32 :EDGCISTKELGKVMRMLGQNPTP Number of specific fragments extracted= 4 number of extra gaps= 0 total=87 Number of alignments=29 # 1ap4 read from 1ap4/merged-good-all-a2m # found chain 1ap4 in template set T0335 3 :SNAKIARINE 1ap4 2 :DDIYKAAVEQ T0335 22 :ITEEEKA 1ap4 12 :LTEEQKN T0335 40 :GFRSSMKNTLKSV 1ap4 19 :EFKAAFDIFVLGA T0335 58 :EGNDVTPEKLKREQRNNKLHLE 1ap4 32 :EDGCISTKELGKVMRMLGQNPT Number of specific fragments extracted= 4 number of extra gaps= 0 total=91 Number of alignments=30 # 1ap4 read from 1ap4/merged-good-all-a2m # found chain 1ap4 in template set T0335 3 :SNAKIARI 1ap4 2 :DDIYKAAV T0335 20 :GVITEEEK 1ap4 10 :EQLTEEQK T0335 39 :KGFRSSMKNTLKSV 1ap4 18 :NEFKAAFDIFVLGA T0335 58 :EGNDVTPEKLKREQRNNKLHLEH 1ap4 32 :EDGCISTKELGKVMRMLGQNPTP Number of specific fragments extracted= 4 number of extra gaps= 0 total=95 Number of alignments=31 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1b5sA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1b5sA expands to /projects/compbio/data/pdb/1b5s.pdb.gz 1b5sA:# T0335 read from 1b5sA/merged-good-all-a2m # 1b5sA read from 1b5sA/merged-good-all-a2m # adding 1b5sA to template set # found chain 1b5sA in template set T0335 5 :AKIARINELAAKAKAGVITEEE 1b5sA 316 :ALAQEINELAEKARDGKLTPGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=96 Number of alignments=32 # 1b5sA read from 1b5sA/merged-good-all-a2m # found chain 1b5sA in template set T0335 5 :AKIARINELAAKAKAGVITEEE 1b5sA 316 :ALAQEINELAEKARDGKLTPGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=97 Number of alignments=33 # 1b5sA read from 1b5sA/merged-good-all-a2m # found chain 1b5sA in template set T0335 5 :AKIARINELAAKAKAGVITEEE 1b5sA 316 :ALAQEINELAEKARDGKLTPGE Number of specific fragments extracted= 1 number of extra gaps= 0 total=98 Number of alignments=34 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1qokA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0335/1qokA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0335/1qokA/merged-good-all-a2m.gz for input Trying 1qokA/merged-good-all-a2m Error: Couldn't open file 1qokA/merged-good-all-a2m or 1qokA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wmhA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0335 read from 1wmhA/merged-good-all-a2m # 1wmhA read from 1wmhA/merged-good-all-a2m # found chain 1wmhA in training set T0335 40 :GFRSSMKNTLK 1wmhA 40 :GLCNEVRDMCS T0335 51 :SVKIIDPEGNDV 1wmhA 58 :TMKWIDEEGDPC T0335 63 :TPEKLKREQRNNKLH 1wmhA 73 :SQLELEEAFRLYELN Number of specific fragments extracted= 3 number of extra gaps= 0 total=101 Number of alignments=35 # 1wmhA read from 1wmhA/merged-good-all-a2m # found chain 1wmhA in training set T0335 40 :GFRSSMKNTLK 1wmhA 40 :GLCNEVRDMCS T0335 51 :SVKIIDPEGNDV 1wmhA 58 :TMKWIDEEGDPC T0335 63 :TPEKLKREQRNNKLH 1wmhA 73 :SQLELEEAFRLYELN Number of specific fragments extracted= 3 number of extra gaps= 0 total=104 Number of alignments=36 # 1wmhA read from 1wmhA/merged-good-all-a2m # found chain 1wmhA in training set T0335 40 :GFRSSMKNTLK 1wmhA 40 :GLCNEVRDMCS T0335 51 :SVKIIDPEGNDV 1wmhA 58 :TMKWIDEEGDPC T0335 63 :TPEKLKREQR 1wmhA 73 :SQLELEEAFR Number of specific fragments extracted= 3 number of extra gaps= 0 total=107 Number of alignments=37 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1y96B/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1y96B expands to /projects/compbio/data/pdb/1y96.pdb.gz 1y96B:# T0335 read from 1y96B/merged-good-all-a2m # 1y96B read from 1y96B/merged-good-all-a2m # adding 1y96B to template set # found chain 1y96B in template set T0335 23 :TEEEKAE 1y96B 50 :SLESQEQ T0335 30 :QQKLRQEYLKGFRS 1y96B 59 :RAALRERYLRSLLA Number of specific fragments extracted= 2 number of extra gaps= 0 total=109 Number of alignments=38 # 1y96B read from 1y96B/merged-good-all-a2m # found chain 1y96B in template set T0335 23 :TEEEKAE 1y96B 50 :SLESQEQ T0335 30 :QQKLRQEYLKGFRS 1y96B 59 :RAALRERYLRSLLA Number of specific fragments extracted= 2 number of extra gaps= 0 total=111 Number of alignments=39 # 1y96B read from 1y96B/merged-good-all-a2m # found chain 1y96B in template set T0335 23 :TEEEKAE 1y96B 50 :SLESQEQ T0335 30 :QQKLRQEYLKGFR 1y96B 59 :RAALRERYLRSLL T0335 47 :NTL 1y96B 72 :AMV T0335 50 :KSVKIIDPEGNDV 1y96B 76 :HQVSFTLHEGVRV Number of specific fragments extracted= 4 number of extra gaps= 0 total=115 Number of alignments=40 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2fzfA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0335/2fzfA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0335/2fzfA/merged-good-all-a2m.gz for input Trying 2fzfA/merged-good-all-a2m Error: Couldn't open file 2fzfA/merged-good-all-a2m or 2fzfA/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wdpA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wdpA expands to /projects/compbio/data/pdb/1wdp.pdb.gz 1wdpA:Skipped atom 486, because occupancy 0.330 <= existing 0.670 in 1wdpA Skipped atom 488, because occupancy 0.330 <= existing 0.670 in 1wdpA Skipped atom 490, because occupancy 0.330 <= existing 0.670 in 1wdpA Skipped atom 492, because occupancy 0.330 <= existing 0.670 in 1wdpA Skipped atom 494, because occupancy 0.330 <= existing 0.670 in 1wdpA Skipped atom 582, because occupancy 0.500 <= existing 0.500 in 1wdpA Skipped atom 584, because occupancy 0.500 <= existing 0.500 in 1wdpA Skipped atom 1698, because occupancy 0.400 <= existing 0.610 in 1wdpA Skipped atom 1700, because occupancy 0.400 <= existing 0.610 in 1wdpA Skipped atom 1702, because occupancy 0.400 <= existing 0.610 in 1wdpA Skipped atom 1704, because occupancy 0.400 <= existing 0.610 in 1wdpA Skipped atom 1706, because occupancy 0.400 <= existing 0.610 in 1wdpA Skipped atom 1936, because occupancy 0.470 <= existing 0.530 in 1wdpA Skipped atom 1938, because occupancy 0.470 <= existing 0.530 in 1wdpA Skipped atom 1986, because occupancy 0.290 <= existing 0.700 in 1wdpA Skipped atom 1988, because occupancy 0.290 <= existing 0.700 in 1wdpA Skipped atom 2249, because occupancy 0.450 <= existing 0.550 in 1wdpA Skipped atom 2251, because occupancy 0.450 <= existing 0.550 in 1wdpA Skipped atom 2253, because occupancy 0.450 <= existing 0.550 in 1wdpA Skipped atom 2255, because occupancy 0.450 <= existing 0.550 in 1wdpA Skipped atom 2669, because occupancy 0.400 <= existing 0.600 in 1wdpA Skipped atom 2671, because occupancy 0.400 <= existing 0.600 in 1wdpA Skipped atom 2864, because occupancy 0.330 <= existing 0.670 in 1wdpA Skipped atom 2866, because occupancy 0.330 <= existing 0.670 in 1wdpA Skipped atom 3422, because occupancy 0.350 <= existing 0.640 in 1wdpA Skipped atom 3424, because occupancy 0.350 <= existing 0.640 in 1wdpA Skipped atom 3426, because occupancy 0.350 <= existing 0.640 in 1wdpA Skipped atom 3428, because occupancy 0.350 <= existing 0.640 in 1wdpA Skipped atom 3430, because occupancy 0.350 <= existing 0.640 in 1wdpA Skipped atom 3461, because occupancy 0.410 <= existing 0.590 in 1wdpA Skipped atom 3463, because occupancy 0.410 <= existing 0.590 in 1wdpA Skipped atom 3465, because occupancy 0.410 <= existing 0.590 in 1wdpA Skipped atom 3467, because occupancy 0.410 <= existing 0.590 in 1wdpA # T0335 read from 1wdpA/merged-good-all-a2m # 1wdpA read from 1wdpA/merged-good-all-a2m # adding 1wdpA to template set # found chain 1wdpA in template set Warning: unaligning (T0335)I55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wdpA)V23 Warning: unaligning (T0335)D61 because of BadResidue code BAD_PEPTIDE in next template residue (1wdpA)E30 Warning: unaligning (T0335)V62 because of BadResidue code BAD_PEPTIDE at template residue (1wdpA)E30 T0335 56 :DPEGN 1wdpA 24 :NVDNV T0335 63 :TPEKLKREQRN 1wdpA 31 :DPDGLKEQLLQ Number of specific fragments extracted= 2 number of extra gaps= 2 total=117 # 1wdpA read from 1wdpA/merged-good-all-a2m # found chain 1wdpA in template set Warning: unaligning (T0335)I55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wdpA)V23 Warning: unaligning (T0335)D61 because of BadResidue code BAD_PEPTIDE in next template residue (1wdpA)E30 Warning: unaligning (T0335)V62 because of BadResidue code BAD_PEPTIDE at template residue (1wdpA)E30 T0335 56 :DPEGN 1wdpA 24 :NVDNV T0335 63 :TPEKLKREQR 1wdpA 31 :DPDGLKEQLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=119 # 1wdpA read from 1wdpA/merged-good-all-a2m # found chain 1wdpA in template set Warning: unaligning (T0335)I54 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE in next template residue (1wdpA)V23 Warning: unaligning (T0335)I55 because of BadResidue code NON_PLANAR_PEPTIDE+BAD_PEPTIDE at template residue (1wdpA)V23 Warning: unaligning (T0335)D61 because of BadResidue code BAD_PEPTIDE in next template residue (1wdpA)E30 Warning: unaligning (T0335)V62 because of BadResidue code BAD_PEPTIDE at template residue (1wdpA)E30 T0335 56 :DPEGN 1wdpA 24 :NVDNV T0335 63 :TPEKLKREQR 1wdpA 31 :DPDGLKEQLL Number of specific fragments extracted= 2 number of extra gaps= 2 total=121 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1t3wA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1t3wA expands to /projects/compbio/data/pdb/1t3w.pdb.gz 1t3wA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # T0335 read from 1t3wA/merged-good-all-a2m # 1t3wA read from 1t3wA/merged-good-all-a2m # adding 1t3wA to template set # found chain 1t3wA in template set T0335 2 :ISNAKIARINELAAKAKAGVITEEEKAEQQKLRQE 1t3wA 543 :FDSLLELRQEELIARERTHGLSNEERLELWTLNQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=122 Number of alignments=41 # 1t3wA read from 1t3wA/merged-good-all-a2m # found chain 1t3wA in template set T0335 2 :ISNAKIARINELAAKAKAGVITEEEKAEQQKLRQE 1t3wA 543 :FDSLLELRQEELIARERTHGLSNEERLELWTLNQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=123 Number of alignments=42 # 1t3wA read from 1t3wA/merged-good-all-a2m # found chain 1t3wA in template set T0335 3 :SNAKIARINELAAKAKAGVITEEEKAEQQKLRQE 1t3wA 544 :DSLLELRQEELIARERTHGLSNEERLELWTLNQE Number of specific fragments extracted= 1 number of extra gaps= 0 total=124 Number of alignments=43 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1wdtA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1wdtA expands to /projects/compbio/data/pdb/1wdt.pdb.gz 1wdtA:# T0335 read from 1wdtA/merged-good-all-a2m # 1wdtA read from 1wdtA/merged-good-all-a2m # adding 1wdtA to template set # found chain 1wdtA in template set T0335 21 :VITEEEKAEQQKLRQEYLKGFR 1wdtA 192 :EVPPEERERVQRFRQEVLEAIV T0335 43 :SSMKNTLKS 1wdtA 217 :EGLLEKYLE T0335 59 :GNDVTPEKLKREQRN 1wdtA 226 :GEEVTGEALEKAFHE Number of specific fragments extracted= 3 number of extra gaps= 0 total=127 Number of alignments=44 # 1wdtA read from 1wdtA/merged-good-all-a2m # found chain 1wdtA in template set T0335 21 :VITEEEKAEQQKLRQEYLKGFRS 1wdtA 192 :EVPPEERERVQRFRQEVLEAIVE T0335 44 :SMKNTLKS 1wdtA 218 :GLLEKYLE T0335 59 :GNDVTPEKLKREQRN 1wdtA 226 :GEEVTGEALEKAFHE Number of specific fragments extracted= 3 number of extra gaps= 0 total=130 Number of alignments=45 # 1wdtA read from 1wdtA/merged-good-all-a2m # found chain 1wdtA in template set T0335 21 :VITEEEKAEQQKLRQEYLKGFRS 1wdtA 192 :EVPPEERERVQRFRQEVLEAIVE T0335 44 :SMKNTLKS 1wdtA 218 :GLLEKYLE T0335 59 :GNDVTPEKLKREQRN 1wdtA 226 :GEEVTGEALEKAFHE Number of specific fragments extracted= 3 number of extra gaps= 0 total=133 Number of alignments=46 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2aexA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2aexA expands to /projects/compbio/data/pdb/2aex.pdb.gz 2aexA:Skipped atom 178, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 180, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 182, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 184, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 186, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 188, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 190, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 192, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 194, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 196, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 198, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 402, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 404, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 406, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 408, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 410, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 412, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 414, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 416, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 418, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 681, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 683, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 685, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 687, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 689, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 691, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 969, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 971, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 973, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 975, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 977, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 979, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1121, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1123, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1125, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1127, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1129, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1131, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1133, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1135, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1137, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1139, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1141, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1205, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1207, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1209, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1211, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1213, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1215, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1217, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1219, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1373, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1375, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1377, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1379, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1381, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1383, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1385, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1387, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1389, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1514, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1516, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1518, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1520, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1522, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1524, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1526, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1528, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1530, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1823, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1825, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1827, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1829, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1831, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1833, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1835, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 1837, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2093, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2095, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2097, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2099, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2101, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2103, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2105, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2107, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2175, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2177, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2179, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2181, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2183, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2185, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2187, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2189, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2323, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2325, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2327, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2329, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2331, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2333, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2335, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2337, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2476, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2478, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2480, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2482, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2484, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2486, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2653, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2655, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2657, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2659, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2661, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2663, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2722, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2724, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2726, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2728, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2730, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2732, because occupancy 0.500 <= existing 0.500 in 2aexA Skipped atom 2734, because occupancy 0.500 <= existing 0.500 in 2aexA # T0335 read from 2aexA/merged-good-all-a2m # 2aexA read from 2aexA/merged-good-all-a2m # adding 2aexA to template set # found chain 2aexA in template set T0335 2 :ISNAKIARIN 2aexA 346 :SKEEVFRFVQ T0335 12 :ELAAKAKAGVITEEEKAEQQKLRQEYL 2aexA 367 :PLVKKHCDDSFTPQEKLWQQLRRGRYV Number of specific fragments extracted= 2 number of extra gaps= 0 total=135 Number of alignments=47 # 2aexA read from 2aexA/merged-good-all-a2m # found chain 2aexA in template set T0335 2 :ISNAKIARIN 2aexA 346 :SKEEVFRFVQ T0335 12 :ELAAKAKAGVITEEEKAEQQ 2aexA 367 :PLVKKHCDDSFTPQEKLWQQ Number of specific fragments extracted= 2 number of extra gaps= 0 total=137 Number of alignments=48 # 2aexA read from 2aexA/merged-good-all-a2m # found chain 2aexA in template set T0335 2 :ISNAKIARIN 2aexA 346 :SKEEVFRFVQ T0335 12 :ELAAKAKAGVITEEEKAEQQKLRQEYL 2aexA 367 :PLVKKHCDDSFTPQEKLWQQLRRGRYV Number of specific fragments extracted= 2 number of extra gaps= 0 total=139 Number of alignments=49 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1avsA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1avsA expands to /projects/compbio/data/pdb/1avs.pdb.gz 1avsA:# T0335 read from 1avsA/merged-good-all-a2m # 1avsA read from 1avsA/merged-good-all-a2m # adding 1avsA to template set # found chain 1avsA in template set Warning: unaligning (T0335)A28 because of BadResidue code BAD_PEPTIDE in next template residue (1avsA)E21 Warning: unaligning (T0335)E29 because of BadResidue code BAD_PEPTIDE at template residue (1avsA)E21 T0335 22 :ITEEEK 1avsA 14 :LSEEMI T0335 30 :QQKLRQEY 1avsA 22 :FKAAFDMF T0335 42 :RSSMKNTLKS 1avsA 39 :TKELGTVMRM T0335 58 :EGNDVTPEKLKREQRNN 1avsA 49 :LGQNPTKEELDAIIEEV Number of specific fragments extracted= 4 number of extra gaps= 1 total=143 Number of alignments=50 # 1avsA read from 1avsA/merged-good-all-a2m # found chain 1avsA in template set Warning: unaligning (T0335)A28 because of BadResidue code BAD_PEPTIDE in next template residue (1avsA)E21 Warning: unaligning (T0335)E29 because of BadResidue code BAD_PEPTIDE at template residue (1avsA)E21 T0335 21 :VITEEEK 1avsA 13 :FLSEEMI T0335 30 :QQKLRQEY 1avsA 22 :FKAAFDMF T0335 42 :RSSMKNTLKS 1avsA 39 :TKELGTVMRM T0335 58 :EGNDVTPEKLKREQRNNKL 1avsA 49 :LGQNPTKEELDAIIEEVDE Number of specific fragments extracted= 4 number of extra gaps= 1 total=147 Number of alignments=51 # 1avsA read from 1avsA/merged-good-all-a2m # found chain 1avsA in template set Warning: unaligning (T0335)A28 because of BadResidue code BAD_PEPTIDE in next template residue (1avsA)E21 Warning: unaligning (T0335)E29 because of BadResidue code BAD_PEPTIDE at template residue (1avsA)E21 T0335 19 :AGVITEEEK 1avsA 11 :RAFLSEEMI T0335 30 :QQKLRQEY 1avsA 22 :FKAAFDMF T0335 57 :PEGNDVTPEKLKREQRNNKLHLE 1avsA 32 :DGGGDISTKELGTVMRMLGQNPT Number of specific fragments extracted= 3 number of extra gaps= 1 total=150 Number of alignments=52 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1f46A/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments # T0335 read from 1f46A/merged-good-all-a2m # 1f46A read from 1f46A/merged-good-all-a2m # found chain 1f46A in training set T0335 28 :AEQQKLRQ 1f46A 96 :QLFKLMLQ T0335 37 :YLKGFRSSM 1f46A 104 :SAQHIADEV T0335 51 :SVKIIDPEGNDVTPEKLKREQRNNKLHLE 1f46A 113 :GGVVLDDQRRMMTPQKLREYQDIIREVKD Number of specific fragments extracted= 3 number of extra gaps= 0 total=153 Number of alignments=53 # 1f46A read from 1f46A/merged-good-all-a2m # found chain 1f46A in training set T0335 37 :YLKGFRSSMKNTLK 1f46A 97 :LFKLMLQSAQHIAD T0335 51 :SVKIIDPEGNDVTPEKLKREQRNNK 1f46A 113 :GGVVLDDQRRMMTPQKLREYQDIIR Number of specific fragments extracted= 2 number of extra gaps= 0 total=155 Number of alignments=54 # 1f46A read from 1f46A/merged-good-all-a2m # found chain 1f46A in training set T0335 33 :LRQEYLKGF 1f46A 97 :LFKLMLQSA T0335 43 :SSMKNTL 1f46A 106 :QHIADEV T0335 51 :SVKIIDPEGNDVTPEKLKREQR 1f46A 113 :GGVVLDDQRRMMTPQKLREYQD Number of specific fragments extracted= 3 number of extra gaps= 0 total=158 Number of alignments=55 # Reading fragments from alignment file # Attempting to read fragment alignments from file 2c5kT/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 2c5kT expands to /projects/compbio/data/pdb/2c5k.pdb.gz 2c5kT:Skipped atom 295, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 299, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 301, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 303, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 305, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 307, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 652, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 656, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 658, because occupancy 0.500 <= existing 0.500 in 2c5kT Skipped atom 660, because occupancy 0.500 <= existing 0.500 in 2c5kT # T0335 read from 2c5kT/merged-good-all-a2m # 2c5kT read from 2c5kT/merged-good-all-a2m # adding 2c5kT to template set # found chain 2c5kT in template set Warning: unaligning (T0335)T23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c5kT)D35 T0335 4 :NAKIARINELAAKAKAGVI 2c5kT 13 :KDTKEQLNRINNYITRHNT T0335 24 :EEEKAEQQKL 2c5kT 39 :EEIQDILKDV T0335 35 :QEYLKGFRSSMKNTLKS 2c5kT 49 :EETIVDLDRSIIVMKRD T0335 58 :EGNDV 2c5kT 66 :ENEDV T0335 65 :EKLKREQRNNKLHLE 2c5kT 71 :SGREAQVKNIKQQLD Number of specific fragments extracted= 5 number of extra gaps= 0 total=163 Number of alignments=56 # 2c5kT read from 2c5kT/merged-good-all-a2m # found chain 2c5kT in template set Warning: unaligning (T0335)T23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c5kT)D35 T0335 3 :SNAKIARINELAAKAKAGVI 2c5kT 12 :VKDTKEQLNRINNYITRHNT T0335 24 :EEEKAEQQKL 2c5kT 39 :EEIQDILKDV T0335 35 :QEYLKGFRSSMKNTLKS 2c5kT 49 :EETIVDLDRSIIVMKRD T0335 58 :EGNDV 2c5kT 66 :ENEDV T0335 65 :EKLKREQRNNK 2c5kT 71 :SGREAQVKNIK Number of specific fragments extracted= 5 number of extra gaps= 0 total=168 Number of alignments=57 # 2c5kT read from 2c5kT/merged-good-all-a2m # found chain 2c5kT in template set Warning: unaligning (T0335)T23 because of BadResidue code CHAIN_BREAK_BEFORE+BAD_PEPTIDE in next template residue (2c5kT)D35 T0335 4 :NAKIARINELAAKAKAGVI 2c5kT 13 :KDTKEQLNRINNYITRHNT T0335 24 :EEEKAEQQKL 2c5kT 39 :EEIQDILKDV T0335 35 :QEYLKGFRSSMKNTLK 2c5kT 49 :EETIVDLDRSIIVMKR T0335 57 :PEGNDVT 2c5kT 65 :DENEDVS T0335 64 :PEKLKREQRN 2c5kT 77 :VKNIKQQLDA Number of specific fragments extracted= 5 number of extra gaps= 0 total=173 Number of alignments=58 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1xupO/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0335/1xupO/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0335/1xupO/merged-good-all-a2m.gz for input Trying 1xupO/merged-good-all-a2m Error: Couldn't open file 1xupO/merged-good-all-a2m or 1xupO/merged-good-all-a2m.gz for input # Reading fragments from alignment file # Attempting to read fragment alignments from file 1byb/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments 1byb expands to /projects/compbio/data/pdb/1byb.pdb.gz 1byb:Warning: there is no chain 1byb will retry with 1bybA # T0335 read from 1byb/merged-good-all-a2m # 1byb read from 1byb/merged-good-all-a2m # adding 1byb to template set # found chain 1byb in template set T0335 54 :IIDPEGNDVTPEKLKREQRN 1byb 22 :VVNVDNVFEDPDGLKEQLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=174 Number of alignments=59 # 1byb read from 1byb/merged-good-all-a2m # found chain 1byb in template set T0335 55 :IDPEGNDVTPEKLKREQRN 1byb 23 :VNVDNVFEDPDGLKEQLLQ Number of specific fragments extracted= 1 number of extra gaps= 0 total=175 # 1byb read from 1byb/merged-good-all-a2m # found chain 1byb in template set T0335 54 :IIDPEGNDVTPEKLKREQR 1byb 22 :VVNVDNVFEDPDGLKEQLL Number of specific fragments extracted= 1 number of extra gaps= 0 total=176 # Reading fragments from alignment file # Attempting to read fragment alignments from file 1r2uA/merged-good-all-a2m with NO bystroff filtering # adding to alignment library if long or multiple fragments Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0335/1r2uA/merged-good-all-a2m or /projects/compbio/experiments/protein-predict/casp7/T0335/1r2uA/merged-good-all-a2m.gz for input Trying 1r2uA/merged-good-all-a2m Error: Couldn't open file 1r2uA/merged-good-all-a2m or 1r2uA/merged-good-all-a2m.gz for input # command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/casp7/T0335//projects/compbio/experiments/protein-predict/casp7/T0335/align.constraints_v3.costfcn or /projects/compbio/experiments/protein-predict/casp7/T0335//projects/compbio/experiments/protein-predict/casp7/T0335/align.constraints_v3.costfcn.gz for input Trying /projects/compbio/experiments/protein-predict/casp7/T0335/align.constraints_v3.costfcn # reading script from file /projects/compbio/experiments/protein-predict/casp7/T0335/align.constraints_v3.costfcn # future Constraint commands -> align # future HelixConstraint commands -> align # future StrandConstraint commands -> align # future SheetConstraint commands -> align # future Hbond commands -> align # future SSbond commands -> align # Constraint # added constraint: constraint((T0335)L38.CB, (T0335)L67.CB) [> 3.9178 = 6.5296 < 8.4885] w=1.0000 to align # Constraint # added constraint: constraint((T0335)K16.CB, (T0335)E26.CB) [> 4.3738 = 7.2896 < 9.4766] w=0.9324 to align # Constraint # added constraint: constraint((T0335)L13.CB, (T0335)E26.CB) [> 3.7689 = 6.2815 < 8.1660] w=0.9324 to align # Constraint # added constraint: constraint((T0335)F41.CB, (T0335)L67.CB) [> 3.4543 = 5.7572 < 7.4844] w=0.9164 to align # Constraint # added constraint: constraint((T0335)L13.CB, (T0335)I22.CB) [> 4.0743 = 6.7904 < 8.8276] w=0.9015 to align # Constraint # added constraint: constraint((T0335)L49.CB, (T0335)V62.CB) [> 3.4438 = 5.7397 < 7.4616] w=0.7369 to align # Constraint # added constraint: constraint((T0335)M45.CB, (T0335)V62.CB) [> 3.7042 = 6.1737 < 8.0258] w=0.7369 to align # Constraint # added constraint: constraint((T0335)F41.CB, (T0335)I54.CB) [> 2.9939 = 4.9898 < 6.4868] w=0.6947 to align # Constraint # added constraint: constraint((T0335)R42.CB, (T0335)I54.CB) [> 3.9169 = 6.5282 < 8.4866] w=0.6935 to align # Constraint # added constraint: constraint((T0335)K53.CB, (T0335)V62.CB) [> 4.2222 = 7.0370 < 9.1481] w=0.6907 to align # Constraint # added constraint: constraint((T0335)K6.CB, (T0335)L33.CB) [> 3.7419 = 6.2365 < 8.1075] w=0.6294 to align # Constraint # added constraint: constraint((T0335)R9.CB, (T0335)L33.CB) [> 3.9211 = 6.5351 < 8.4956] w=0.6294 to align # Constraint # added constraint: constraint((T0335)I10.CB, (T0335)L33.CB) [> 2.8211 = 4.7018 < 6.1123] w=0.6294 to align # Constraint # added constraint: constraint((T0335)L13.CB, (T0335)Q30.CB) [> 2.7487 = 4.5811 < 5.9554] w=0.6294 to align # Constraint # added constraint: constraint((T0335)T48.CB, (T0335)V62.CB) [> 2.9218 = 4.8696 < 6.3305] w=0.6216 to align # Constraint # added constraint: constraint((T0335)A17.CB, (T0335)Q30.CB) [> 3.9894 = 6.6491 < 8.6438] w=0.5985 to align # Constraint # added constraint: constraint((T0335)A14.CB, (T0335)Q30.CB) [> 4.2631 = 7.1052 < 9.2368] w=0.5985 to align # Constraint # added constraint: constraint((T0335)I10.CB, (T0335)R34.CB) [> 4.1391 = 6.8985 < 8.9681] w=0.5985 to align # Constraint # added constraint: constraint((T0335)K6.CB, (T0335)E36.CB) [> 4.2116 = 7.0194 < 9.1252] w=0.5985 to align # Constraint # added constraint: constraint((T0335)D56.CB, (T0335)K66.CB) [> 2.9507 = 4.9178 < 6.3932] w=0.5930 to align # Constraint # added constraint: constraint((T0335)T48.CB, (T0335)K66.CB) [> 3.9473 = 6.5788 < 8.5525] w=0.5907 to align # Constraint # added constraint: constraint((T0335)A17.CB, (T0335)M45.CB) [> 4.7169 = 7.8616 < 10.2201] w=0.5560 to align # Constraint # added constraint: constraint((T0335)A14.CB, (T0335)M45.CB) [> 4.3943 = 7.3238 < 9.5209] w=0.5560 to align # Constraint # added constraint: constraint((T0335)L13.CB, (T0335)L49.CB) [> 4.6454 = 7.7423 < 10.0650] w=0.5560 to align # Constraint # added constraint: constraint((T0335)L13.CB, (T0335)T48.CB) [> 3.5000 = 5.8334 < 7.5834] w=0.5560 to align # Constraint # added constraint: constraint((T0335)I10.CB, (T0335)L49.CB) [> 4.0064 = 6.6773 < 8.6805] w=0.5560 to align # Constraint # added constraint: constraint((T0335)R9.CB, (T0335)L49.CB) [> 4.6411 = 7.7352 < 10.0558] w=0.5560 to align # Constraint # added constraint: constraint((T0335)L38.CB, (T0335)I54.CB) [> 4.2011 = 7.0018 < 9.1023] w=0.4948 to align # Constraint # added constraint: constraint((T0335)M45.CB, (T0335)I54.CB) [> 4.2726 = 7.1209 < 9.2572] w=0.4897 to align # Constraint # added constraint: constraint((T0335)E26.CB, (T0335)G40.CA) [> 4.1513 = 6.9188 < 8.9944] w=0.4323 to align # Constraint # added constraint: constraint((T0335)I10.CB, (T0335)I54.CB) [> 4.5511 = 7.5851 < 9.8607] w=0.3915 to align # Constraint # added constraint: constraint((T0335)K6.CB, (T0335)V52.CB) [> 3.9709 = 6.6182 < 8.6037] w=0.3915 to align # Constraint # added constraint: constraint((T0335)R42.CB, (T0335)V52.CB) [> 4.1743 = 6.9572 < 9.0444] w=0.3906 to align # Constraint # added constraint: constraint((T0335)K6.CB, (T0335)Y37.CB) [> 4.5711 = 7.6184 < 9.9039] w=0.3262 to align # Constraint # added constraint: constraint((T0335)S51.CB, (T0335)N60.CB) [> 2.9941 = 4.9901 < 6.4871] w=0.3156 to align # Constraint # added constraint: constraint((T0335)A14.CB, (T0335)F41.CB) [> 4.7807 = 7.9678 < 10.3581] w=0.3092 to align # Constraint # added constraint: constraint((T0335)L38.CB, (T0335)K68.CB) [> 3.2863 = 5.4772 < 7.1204] w=0.3084 to align # Constraint # added constraint: constraint((T0335)L38.CB, (T0335)P64.CB) [> 3.1863 = 5.3104 < 6.9036] w=0.3084 to align # Constraint # added constraint: constraint((T0335)I7.CB, (T0335)L33.CB) [> 4.6490 = 7.7484 < 10.0729] w=0.3031 to align # Constraint # added constraint: constraint((T0335)Y37.CB, (T0335)L78.CB) [> 4.1024 = 6.8373 < 8.8884] w=0.2981 to align # Constraint # added constraint: constraint((T0335)S44.CB, (T0335)I54.CB) [> 3.2884 = 5.4807 < 7.1249] w=0.2981 to align # Constraint # added constraint: constraint((T0335)T48.CB, (T0335)T63.CB) [> 4.3948 = 7.3247 < 9.5222] w=0.2957 to align # Constraint # added constraint: constraint((T0335)V52.CB, (T0335)V62.CB) [> 4.3100 = 7.1833 < 9.3382] w=0.2957 to align # Constraint # added constraint: constraint((T0335)V52.CB, (T0335)T63.CB) [> 3.9014 = 6.5023 < 8.4529] w=0.2957 to align # Constraint # added constraint: constraint((T0335)I10.CB, (T0335)Y37.CB) [> 3.8771 = 6.4618 < 8.4004] w=0.2953 to align # Constraint # added constraint: constraint((T0335)I7.CB, (T0335)Y37.CB) [> 4.5545 = 7.5908 < 9.8680] w=0.2953 to align # Constraint # added constraint: constraint((T0335)I54.CB, (T0335)E70.CB) [> 3.0578 = 5.0964 < 6.6253] w=0.2924 to align # Constraint # added constraint: constraint((T0335)M45.CB, (T0335)I55.CB) [> 3.6107 = 6.0178 < 7.8231] w=0.1366 to align # Constraint # added constraint: constraint((T0335)I22.CB, (T0335)F41.CB) [> 4.6220 = 7.7033 < 10.0143] w=0.1366 to align # Constraint # added constraint: constraint((T0335)K46.CB, (T0335)L67.CB) [> 3.2074 = 5.3457 < 6.9495] w=0.1153 to align # Constraint # added constraint: constraint((T0335)R42.CB, (T0335)D56.CB) [> 2.7570 = 4.5950 < 5.9736] w=0.1031 to align # Constraint # added constraint: constraint((T0335)N11.CB, (T0335)I22.CB) [> 3.8720 = 6.4533 < 8.3892] w=0.0986 to align # Constraint # added constraint: constraint((T0335)E12.CB, (T0335)I22.CB) [> 3.4024 = 5.6707 < 7.3719] w=0.0986 to align # Constraint # added constraint: constraint((T0335)F41.CB, (T0335)V52.CB) [> 4.1272 = 6.8787 < 8.9423] w=0.0982 to align # Constraint # added constraint: constraint((T0335)R42.CB, (T0335)S51.CB) [> 4.7328 = 7.8880 < 10.2544] w=0.0982 to align # Constraint # added constraint: constraint((T0335)I7.CB, (T0335)L67.CB) [> 3.7931 = 6.3219 < 8.2185] w=0.0103 to align # Constraint # added constraint: constraint((T0335)I7.CB, (T0335)H77.CB) [> 3.9033 = 6.5055 < 8.4571] w=0.0103 to align # Constraint # added constraint: constraint((T0335)N11.CB, (T0335)E70.CB) [> 4.6740 = 7.7900 < 10.1270] w=0.0103 to align # Constraint # added constraint: constraint((T0335)N11.CB, (T0335)H77.CB) [> 4.7153 = 7.8588 < 10.2165] w=0.0103 to align # SetCost created cost = # ( 1.0000 * align ) # command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/constraints_v3/T0335/ # command:# reading script from file servers-clean.under # Prefix for input files set to /projects/compbio/experiments/protein-predict/casp7/T0335/decoys/ # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS4 # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS5 # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # naming current conformation BayesHH_TS1 # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 48 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # Found a chain break before 41 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS1 # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 39 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS3 # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS4 # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS5 # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL2 # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS1 # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS2 # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS3 # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 28 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # naming current conformation FUGMOD_TS5 # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL1 # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 Skipped atom 255, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 257, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 259, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 261, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 263, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL3 # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL5 # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # naming current conformation Frankenstein_TS1 # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # naming current conformation Frankenstein_TS2 # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # naming current conformation Frankenstein_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 39 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS3 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS4 # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # naming current conformation HHpred1_TS1 # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # naming current conformation LOOPP_TS2 # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 9 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server2_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Ma-OPUS-server2_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS1 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS3 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS4 # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS5 # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 33 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 11 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation PROTINFO-AB_TS5 # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # naming current conformation Pcons6_TS1 # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # naming current conformation Pcons6_TS3 # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # naming current conformation Pcons6_TS5 # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # naming current conformation Phyre-2_TS1 # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 62 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # naming current conformation Phyre-2_TS5 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS2 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS3 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 18 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS2 # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS4 # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS1 # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 58 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 39 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # naming current conformation SP4_TS3 # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS1 # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 27 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS4 # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 60 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 37 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 6 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 35 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS1 # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS4 # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS5 # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0335 can't currently be optimized by undertaker # naming current conformation shub_TS1 # command:Using radius: 8.0000 Using models AND alignments for constraints model score 2.2526 model score 2.0488 model score 2.1752 model score 1.9289 model score 2.0153 model score 2.0828 model score 2.0806 model score 2.0922 model score 1.6036 model score 2.0787 model score 1.2925 model score 2.0665 model score 0.7425 model score 1.7107 model score 0.5143 model score 1.7459 model score 1.7083 model score 0.7425 model score 0.5143 model score 0.5434 model score 0.6706 model score 0.4532 model score 1.7040 model score 1.1807 model score 1.0028 model score 1.8093 model score 1.8293 model score 1.2423 model score 1.3125 model score 2.7425 model score 1.7387 model score 1.9857 model score 1.1631 model score 1.5057 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.7272 model score 1.0289 model score 2.5325 model score 2.4379 model score 1.0142 model score 1.4554 model score 1.5285 model score 1.0695 model score 1.2867 model score 1.1338 model score 1.6802 model score 1.6321 model score 1.8078 model score 2.0122 model score 2.0886 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.6783 model score 1.9391 model score 1.6121 model score 1.9606 model score 1.9263 model score 2.0793 model score 1.1810 model score 1.4342 model score 1.8216 model score 2.1490 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.4659 model score 1.5702 model score 1.4414 model score 2.4767 model score 1.8791 model score 1.8957 model score 1.8703 model score 1.7743 model score 1.9807 model score 2.1314 model score 1.7493 model score 2.7437 model score 2.3564 model score 1.6073 model score 1.7040 model score 1.7040 model score 1.7040 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.6797 model score 1.7498 model score 1.4146 model score 1.7261 model score 1.8205 model score 1.7157 model score 2.2762 model score 2.0706 model score 1.7876 model score 1.8012 model score 1.4062 model score 1.8924 model score 1.6152 model score 2.4923 model score 1.8556 model score 1.0796 model score 1.3410 model score 1.1365 model score 0.9395 model score 1.1212 model score 1.9453 model score 1.8048 model score 1.4047 model score 1.2049 model score 2.0514 model score 1.5563 model score 0.8046 model score 0.8679 model score 0.9861 model score 1.0874 model score 0.7457 model score 1.2689 model score 0.9861 model score 1.8463 model score 0.8811 model score 1.5146 model score 0.5868 model score 1.2509 model score 0.6767 model score 1.8174 model score 0.7048 model score 1.1589 model score 1.3148 model score 1.1917 model score 1.3120 model score 1.3552 model score 0.9915 model score 1.2077 model score 0.7048 model score 0.7286 model score 2.2226 model score 2.4653 model score 1.5426 model score 1.2594 model score 1.2395 model score 1.1690 model score 1.4131 model score 1.2472 model score 1.2831 model score 1.4144 model score 0.8982 model score 1.4510 model score 0.8973 model score 1.5946 model score 1.1834 model score 1.2266 model score 1.4000 model score 0.6767 model score 0.8512 model score 0.7048 model score 0.8278 model score 0.5868 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.1811 model score 1.4666 model score 1.0280 model score 1.2773 model score 0.9141 model score 1.2395 model score 1.3706 model score 1.2069 model score 1.4285 model score 1.7280 model score 1.2395 model score 1.4491 model score 1.2037 model score 1.0371 model score 1.2881 model score 1.9848 model score 1.3426 model score 0.9980 model score 1.4611 model score 1.2751 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.3400 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 0.3655 model score 0.3803 model score 0.4021 model score 0.4941 model score 0.7012 model score 1.4311 model score 2.1156 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2771 model score 1.2903 model score 1.8105 model score 1.8361 model score 1.6600 model score 1.3178 model score 1.3434 model score 1.4216 model score 1.6380 model score 1.6026 model score 1.3640 model score 1.7822 model score 1.9576 model score 1.5584 model score 2.1732 model score 1.5584 model score 1.0197 model score 1.9453 model score 1.9488 model score 1.9678 model score 1.1335 model score 2.2296 model score 1.1066 model score 1.9941 USE_META, weight: 0.2858 cost: 2.2526 min: 0.3655 max: 2.7437 USE_META, weight: 0.3630 cost: 2.0488 min: 0.3655 max: 2.7437 USE_META, weight: 0.3152 cost: 2.1752 min: 0.3655 max: 2.7437 USE_META, weight: 0.4083 cost: 1.9289 min: 0.3655 max: 2.7437 USE_META, weight: 0.3757 cost: 2.0153 min: 0.3655 max: 2.7437 USE_META, weight: 0.3501 cost: 2.0828 min: 0.3655 max: 2.7437 USE_META, weight: 0.3509 cost: 2.0806 min: 0.3655 max: 2.7437 USE_META, weight: 0.3466 cost: 2.0922 min: 0.3655 max: 2.7437 USE_META, weight: 0.5314 cost: 1.6036 min: 0.3655 max: 2.7437 USE_META, weight: 0.3517 cost: 2.0787 min: 0.3655 max: 2.7437 USE_META, weight: 0.6492 cost: 1.2925 min: 0.3655 max: 2.7437 USE_META, weight: 0.3563 cost: 2.0665 min: 0.3655 max: 2.7437 USE_META, weight: 0.8573 cost: 0.7425 min: 0.3655 max: 2.7437 USE_META, weight: 0.4909 cost: 1.7107 min: 0.3655 max: 2.7437 USE_META, weight: 0.9437 cost: 0.5143 min: 0.3655 max: 2.7437 USE_META, weight: 0.4776 cost: 1.7459 min: 0.3655 max: 2.7437 USE_META, weight: 0.4919 cost: 1.7083 min: 0.3655 max: 2.7437 USE_META, weight: 0.8573 cost: 0.7425 min: 0.3655 max: 2.7437 USE_META, weight: 0.9437 cost: 0.5143 min: 0.3655 max: 2.7437 USE_META, weight: 0.9327 cost: 0.5434 min: 0.3655 max: 2.7437 USE_META, weight: 0.8845 cost: 0.6706 min: 0.3655 max: 2.7437 USE_META, weight: 0.9668 cost: 0.4532 min: 0.3655 max: 2.7437 USE_META, weight: 0.4935 cost: 1.7040 min: 0.3655 max: 2.7437 USE_META, weight: 0.6915 cost: 1.1807 min: 0.3655 max: 2.7437 USE_META, weight: 0.7588 cost: 1.0028 min: 0.3655 max: 2.7437 USE_META, weight: 0.4536 cost: 1.8093 min: 0.3655 max: 2.7437 USE_META, weight: 0.4461 cost: 1.8293 min: 0.3655 max: 2.7437 USE_META, weight: 0.6682 cost: 1.2423 min: 0.3655 max: 2.7437 USE_META, weight: 0.6416 cost: 1.3125 min: 0.3655 max: 2.7437 USE_META, weight: 0.1005 cost: 2.7425 min: 0.3655 max: 2.7437 USE_META, weight: 0.4803 cost: 1.7387 min: 0.3655 max: 2.7437 USE_META, weight: 0.3869 cost: 1.9857 min: 0.3655 max: 2.7437 USE_META, weight: 0.6982 cost: 1.1631 min: 0.3655 max: 2.7437 USE_META, weight: 0.5685 cost: 1.5057 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.4847 cost: 1.7272 min: 0.3655 max: 2.7437 USE_META, weight: 0.7489 cost: 1.0289 min: 0.3655 max: 2.7437 USE_META, weight: 0.1799 cost: 2.5325 min: 0.3655 max: 2.7437 USE_META, weight: 0.2157 cost: 2.4379 min: 0.3655 max: 2.7437 USE_META, weight: 0.7545 cost: 1.0142 min: 0.3655 max: 2.7437 USE_META, weight: 0.5875 cost: 1.4554 min: 0.3655 max: 2.7437 USE_META, weight: 0.5599 cost: 1.5285 min: 0.3655 max: 2.7437 USE_META, weight: 0.7336 cost: 1.0695 min: 0.3655 max: 2.7437 USE_META, weight: 0.6514 cost: 1.2867 min: 0.3655 max: 2.7437 USE_META, weight: 0.7093 cost: 1.1338 min: 0.3655 max: 2.7437 USE_META, weight: 0.5025 cost: 1.6802 min: 0.3655 max: 2.7437 USE_META, weight: 0.5207 cost: 1.6321 min: 0.3655 max: 2.7437 USE_META, weight: 0.4542 cost: 1.8078 min: 0.3655 max: 2.7437 USE_META, weight: 0.3768 cost: 2.0122 min: 0.3655 max: 2.7437 USE_META, weight: 0.3479 cost: 2.0886 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.5032 cost: 1.6783 min: 0.3655 max: 2.7437 USE_META, weight: 0.4045 cost: 1.9391 min: 0.3655 max: 2.7437 USE_META, weight: 0.5283 cost: 1.6121 min: 0.3655 max: 2.7437 USE_META, weight: 0.3964 cost: 1.9606 min: 0.3655 max: 2.7437 USE_META, weight: 0.4094 cost: 1.9263 min: 0.3655 max: 2.7437 USE_META, weight: 0.3514 cost: 2.0793 min: 0.3655 max: 2.7437 USE_META, weight: 0.6914 cost: 1.1810 min: 0.3655 max: 2.7437 USE_META, weight: 0.5956 cost: 1.4342 min: 0.3655 max: 2.7437 USE_META, weight: 0.4490 cost: 1.8216 min: 0.3655 max: 2.7437 USE_META, weight: 0.3251 cost: 2.1490 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.5836 cost: 1.4659 min: 0.3655 max: 2.7437 USE_META, weight: 0.5441 cost: 1.5702 min: 0.3655 max: 2.7437 USE_META, weight: 0.5929 cost: 1.4414 min: 0.3655 max: 2.7437 USE_META, weight: 0.2011 cost: 2.4767 min: 0.3655 max: 2.7437 USE_META, weight: 0.4272 cost: 1.8791 min: 0.3655 max: 2.7437 USE_META, weight: 0.4209 cost: 1.8957 min: 0.3655 max: 2.7437 USE_META, weight: 0.4305 cost: 1.8703 min: 0.3655 max: 2.7437 USE_META, weight: 0.4669 cost: 1.7743 min: 0.3655 max: 2.7437 USE_META, weight: 0.3888 cost: 1.9807 min: 0.3655 max: 2.7437 USE_META, weight: 0.3317 cost: 2.1314 min: 0.3655 max: 2.7437 USE_META, weight: 0.4763 cost: 1.7493 min: 0.3655 max: 2.7437 USE_META, weight: 0.1000 cost: 2.7437 min: 0.3655 max: 2.7437 USE_META, weight: 0.2466 cost: 2.3564 min: 0.3655 max: 2.7437 USE_META, weight: 0.5300 cost: 1.6073 min: 0.3655 max: 2.7437 USE_META, weight: 0.4935 cost: 1.7040 min: 0.3655 max: 2.7437 USE_META, weight: 0.4935 cost: 1.7040 min: 0.3655 max: 2.7437 USE_META, weight: 0.4935 cost: 1.7040 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.5026 cost: 1.6797 min: 0.3655 max: 2.7437 USE_META, weight: 0.4761 cost: 1.7498 min: 0.3655 max: 2.7437 USE_META, weight: 0.6030 cost: 1.4146 min: 0.3655 max: 2.7437 USE_META, weight: 0.4851 cost: 1.7261 min: 0.3655 max: 2.7437 USE_META, weight: 0.4494 cost: 1.8205 min: 0.3655 max: 2.7437 USE_META, weight: 0.4890 cost: 1.7157 min: 0.3655 max: 2.7437 USE_META, weight: 0.2769 cost: 2.2762 min: 0.3655 max: 2.7437 USE_META, weight: 0.3547 cost: 2.0706 min: 0.3655 max: 2.7437 USE_META, weight: 0.4618 cost: 1.7876 min: 0.3655 max: 2.7437 USE_META, weight: 0.4567 cost: 1.8012 min: 0.3655 max: 2.7437 USE_META, weight: 0.6061 cost: 1.4062 min: 0.3655 max: 2.7437 USE_META, weight: 0.4222 cost: 1.8924 min: 0.3655 max: 2.7437 USE_META, weight: 0.5271 cost: 1.6152 min: 0.3655 max: 2.7437 USE_META, weight: 0.1951 cost: 2.4923 min: 0.3655 max: 2.7437 USE_META, weight: 0.4361 cost: 1.8556 min: 0.3655 max: 2.7437 USE_META, weight: 0.7298 cost: 1.0796 min: 0.3655 max: 2.7437 USE_META, weight: 0.6308 cost: 1.3410 min: 0.3655 max: 2.7437 USE_META, weight: 0.7082 cost: 1.1365 min: 0.3655 max: 2.7437 USE_META, weight: 0.7828 cost: 0.9395 min: 0.3655 max: 2.7437 USE_META, weight: 0.7140 cost: 1.1212 min: 0.3655 max: 2.7437 USE_META, weight: 0.4021 cost: 1.9453 min: 0.3655 max: 2.7437 USE_META, weight: 0.4553 cost: 1.8048 min: 0.3655 max: 2.7437 USE_META, weight: 0.6067 cost: 1.4047 min: 0.3655 max: 2.7437 USE_META, weight: 0.6823 cost: 1.2049 min: 0.3655 max: 2.7437 USE_META, weight: 0.3620 cost: 2.0514 min: 0.3655 max: 2.7437 USE_META, weight: 0.5494 cost: 1.5563 min: 0.3655 max: 2.7437 USE_META, weight: 0.8338 cost: 0.8046 min: 0.3655 max: 2.7437 USE_META, weight: 0.8099 cost: 0.8679 min: 0.3655 max: 2.7437 USE_META, weight: 0.7652 cost: 0.9861 min: 0.3655 max: 2.7437 USE_META, weight: 0.7268 cost: 1.0874 min: 0.3655 max: 2.7437 USE_META, weight: 0.8561 cost: 0.7457 min: 0.3655 max: 2.7437 USE_META, weight: 0.6581 cost: 1.2689 min: 0.3655 max: 2.7437 USE_META, weight: 0.7652 cost: 0.9861 min: 0.3655 max: 2.7437 USE_META, weight: 0.4396 cost: 1.8463 min: 0.3655 max: 2.7437 USE_META, weight: 0.8049 cost: 0.8811 min: 0.3655 max: 2.7437 USE_META, weight: 0.5652 cost: 1.5146 min: 0.3655 max: 2.7437 USE_META, weight: 0.9163 cost: 0.5868 min: 0.3655 max: 2.7437 USE_META, weight: 0.6649 cost: 1.2509 min: 0.3655 max: 2.7437 USE_META, weight: 0.8822 cost: 0.6767 min: 0.3655 max: 2.7437 USE_META, weight: 0.4506 cost: 1.8174 min: 0.3655 max: 2.7437 USE_META, weight: 0.8716 cost: 0.7048 min: 0.3655 max: 2.7437 USE_META, weight: 0.6997 cost: 1.1589 min: 0.3655 max: 2.7437 USE_META, weight: 0.6408 cost: 1.3148 min: 0.3655 max: 2.7437 USE_META, weight: 0.6873 cost: 1.1917 min: 0.3655 max: 2.7437 USE_META, weight: 0.6418 cost: 1.3120 min: 0.3655 max: 2.7437 USE_META, weight: 0.6255 cost: 1.3552 min: 0.3655 max: 2.7437 USE_META, weight: 0.7631 cost: 0.9915 min: 0.3655 max: 2.7437 USE_META, weight: 0.6813 cost: 1.2077 min: 0.3655 max: 2.7437 USE_META, weight: 0.8716 cost: 0.7048 min: 0.3655 max: 2.7437 USE_META, weight: 0.8626 cost: 0.7286 min: 0.3655 max: 2.7437 USE_META, weight: 0.2972 cost: 2.2226 min: 0.3655 max: 2.7437 USE_META, weight: 0.2054 cost: 2.4653 min: 0.3655 max: 2.7437 USE_META, weight: 0.5545 cost: 1.5426 min: 0.3655 max: 2.7437 USE_META, weight: 0.6617 cost: 1.2594 min: 0.3655 max: 2.7437 USE_META, weight: 0.6692 cost: 1.2395 min: 0.3655 max: 2.7437 USE_META, weight: 0.6959 cost: 1.1690 min: 0.3655 max: 2.7437 USE_META, weight: 0.6036 cost: 1.4131 min: 0.3655 max: 2.7437 USE_META, weight: 0.6663 cost: 1.2472 min: 0.3655 max: 2.7437 USE_META, weight: 0.6528 cost: 1.2831 min: 0.3655 max: 2.7437 USE_META, weight: 0.6031 cost: 1.4144 min: 0.3655 max: 2.7437 USE_META, weight: 0.7984 cost: 0.8982 min: 0.3655 max: 2.7437 USE_META, weight: 0.5892 cost: 1.4510 min: 0.3655 max: 2.7437 USE_META, weight: 0.7988 cost: 0.8973 min: 0.3655 max: 2.7437 USE_META, weight: 0.5349 cost: 1.5946 min: 0.3655 max: 2.7437 USE_META, weight: 0.6905 cost: 1.1834 min: 0.3655 max: 2.7437 USE_META, weight: 0.6741 cost: 1.2266 min: 0.3655 max: 2.7437 USE_META, weight: 0.6085 cost: 1.4000 min: 0.3655 max: 2.7437 USE_META, weight: 0.8822 cost: 0.6767 min: 0.3655 max: 2.7437 USE_META, weight: 0.8162 cost: 0.8512 min: 0.3655 max: 2.7437 USE_META, weight: 0.8716 cost: 0.7048 min: 0.3655 max: 2.7437 USE_META, weight: 0.8250 cost: 0.8278 min: 0.3655 max: 2.7437 USE_META, weight: 0.9163 cost: 0.5868 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6914 cost: 1.1811 min: 0.3655 max: 2.7437 USE_META, weight: 0.5833 cost: 1.4666 min: 0.3655 max: 2.7437 USE_META, weight: 0.7493 cost: 1.0280 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2773 min: 0.3655 max: 2.7437 USE_META, weight: 0.7924 cost: 0.9141 min: 0.3655 max: 2.7437 USE_META, weight: 0.6692 cost: 1.2395 min: 0.3655 max: 2.7437 USE_META, weight: 0.6196 cost: 1.3706 min: 0.3655 max: 2.7437 USE_META, weight: 0.6816 cost: 1.2069 min: 0.3655 max: 2.7437 USE_META, weight: 0.5977 cost: 1.4285 min: 0.3655 max: 2.7437 USE_META, weight: 0.4844 cost: 1.7280 min: 0.3655 max: 2.7437 USE_META, weight: 0.6692 cost: 1.2395 min: 0.3655 max: 2.7437 USE_META, weight: 0.5899 cost: 1.4491 min: 0.3655 max: 2.7437 USE_META, weight: 0.6828 cost: 1.2037 min: 0.3655 max: 2.7437 USE_META, weight: 0.7459 cost: 1.0371 min: 0.3655 max: 2.7437 USE_META, weight: 0.6509 cost: 1.2881 min: 0.3655 max: 2.7437 USE_META, weight: 0.3872 cost: 1.9848 min: 0.3655 max: 2.7437 USE_META, weight: 0.6302 cost: 1.3426 min: 0.3655 max: 2.7437 USE_META, weight: 0.7607 cost: 0.9980 min: 0.3655 max: 2.7437 USE_META, weight: 0.5854 cost: 1.4611 min: 0.3655 max: 2.7437 USE_META, weight: 0.6558 cost: 1.2751 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6312 cost: 1.3400 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 1.0000 cost: 0.3655 min: 0.3655 max: 2.7437 USE_META, weight: 0.9944 cost: 0.3803 min: 0.3655 max: 2.7437 USE_META, weight: 0.9861 cost: 0.4021 min: 0.3655 max: 2.7437 USE_META, weight: 0.9513 cost: 0.4941 min: 0.3655 max: 2.7437 USE_META, weight: 0.8729 cost: 0.7012 min: 0.3655 max: 2.7437 USE_META, weight: 0.5967 cost: 1.4311 min: 0.3655 max: 2.7437 USE_META, weight: 0.3377 cost: 2.1156 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6550 cost: 1.2771 min: 0.3655 max: 2.7437 USE_META, weight: 0.6500 cost: 1.2903 min: 0.3655 max: 2.7437 USE_META, weight: 0.4532 cost: 1.8105 min: 0.3655 max: 2.7437 USE_META, weight: 0.4435 cost: 1.8361 min: 0.3655 max: 2.7437 USE_META, weight: 0.5101 cost: 1.6600 min: 0.3655 max: 2.7437 USE_META, weight: 0.6396 cost: 1.3178 min: 0.3655 max: 2.7437 USE_META, weight: 0.6299 cost: 1.3434 min: 0.3655 max: 2.7437 USE_META, weight: 0.6003 cost: 1.4216 min: 0.3655 max: 2.7437 USE_META, weight: 0.5184 cost: 1.6380 min: 0.3655 max: 2.7437 USE_META, weight: 0.5318 cost: 1.6026 min: 0.3655 max: 2.7437 USE_META, weight: 0.6222 cost: 1.3640 min: 0.3655 max: 2.7437 USE_META, weight: 0.4639 cost: 1.7822 min: 0.3655 max: 2.7437 USE_META, weight: 0.3975 cost: 1.9576 min: 0.3655 max: 2.7437 USE_META, weight: 0.5486 cost: 1.5584 min: 0.3655 max: 2.7437 USE_META, weight: 0.3159 cost: 2.1732 min: 0.3655 max: 2.7437 USE_META, weight: 0.5486 cost: 1.5584 min: 0.3655 max: 2.7437 USE_META, weight: 0.7524 cost: 1.0197 min: 0.3655 max: 2.7437 USE_META, weight: 0.4021 cost: 1.9453 min: 0.3655 max: 2.7437 USE_META, weight: 0.4008 cost: 1.9488 min: 0.3655 max: 2.7437 USE_META, weight: 0.3936 cost: 1.9678 min: 0.3655 max: 2.7437 USE_META, weight: 0.7094 cost: 1.1335 min: 0.3655 max: 2.7437 USE_META, weight: 0.2946 cost: 2.2296 min: 0.3655 max: 2.7437 USE_META, weight: 0.7195 cost: 1.1066 min: 0.3655 max: 2.7437 USE_META, weight: 0.3837 cost: 1.9941 min: 0.3655 max: 2.7437 USE_EVALUE, weight: 0.9611 eval: 4.1792 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9611 eval: 4.1792 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9611 eval: 4.1792 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9550 eval: 4.7641 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9550 eval: 4.7641 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9550 eval: 4.7641 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9641 eval: 3.9017 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9641 eval: 3.9017 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9641 eval: 3.9017 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 1.0000 eval: 0.4820 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 1.0000 eval: 0.4820 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 1.0000 eval: 0.4820 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9596 eval: 4.3300 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.4416 eval: 53.6000 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.4416 eval: 53.6000 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.4416 eval: 53.6000 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9649 eval: 3.8189 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9649 eval: 3.8189 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9649 eval: 3.8189 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.7980 eval: 19.7000 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.7980 eval: 19.7000 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.7980 eval: 19.7000 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9555 eval: 4.7139 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9555 eval: 4.7139 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9555 eval: 4.7139 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9510 eval: 5.1438 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9510 eval: 5.1438 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9510 eval: 5.1438 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9563 eval: 4.6407 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9563 eval: 4.6407 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9563 eval: 4.6407 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9800 eval: 2.3889 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9800 eval: 2.3889 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9800 eval: 2.3889 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9455 eval: 5.6707 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9455 eval: 5.6707 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9455 eval: 5.6707 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9694 eval: 3.3897 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9694 eval: 3.3897 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9694 eval: 3.3897 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9803 eval: 2.3554 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9803 eval: 2.3554 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9803 eval: 2.3554 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9539 eval: 4.8713 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9539 eval: 4.8713 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9539 eval: 4.8713 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9567 eval: 4.6013 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9567 eval: 4.6013 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9567 eval: 4.6013 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.5594 eval: 42.4000 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.5594 eval: 42.4000 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.5594 eval: 42.4000 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9528 eval: 4.9737 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9528 eval: 4.9737 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9528 eval: 4.9737 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.1000 eval: 86.1000 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.1000 eval: 86.1000 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.1000 eval: 86.1000 min: 0.4820 max: 86.1000 USE_EVALUE, weight: 0.9438 eval: 5.8310 min: 0.4820 max: 86.1000 Number of contacts in models: 248 Number of contacts in alignments: 59 NUMB_ALIGNS: 59 Adding 2422 constraints to all3.constraints Done adding distance constraints # command:Reading probabilities from probabilities.dat Reading constraints from ConstraintSet all3.constraints maxweight: 1.0000 Optimizing... Probability sum: -124.7572, CN propb: -124.7572 weights: 0.3127 constraints: 97 # command:Found ConstraintSet # PrintContacts align.constraints_meta03 Number of constraints in align3.constraints 97 # command:Found ConstraintSet # PrintContacts align_bonus.constraints_meta03 Number of constraints in align3.constraints.bonus 97 # command:Found ConstraintSet # PrintContacts rejected.constraints_meta03 Number of constraints in rejected3.constraints 2325 # command:Found ConstraintSet # PrintContacts rejected_bonus.constraints_meta03 Number of constraints in rejected3.constraints.bonus 2325 # command:Found ConstraintSet # PrintContacts non_contacts.constraints_meta03 Number of constraints in noncontact3.constraints 0 # command:Found ConstraintSet # PrintContacts non_contacts_bonus.constraints_meta03 Number of constraints in noncontact3.constraints.bonus 0 # command:Found ConstraintSet # PrintContacts all.constraints_meta03 Number of constraints in all3.constraints 2422 # command: